Citrus Sinensis ID: 019349

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKRA
Secondary Structure (PSIPRED)
cccccccccEEEEEEcccccEEEEEEccEEEEEEcccccEEEEEEcccEEEEEEcccccEEEEEEccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEccEEEEEEcccccEEEEEEcccccccEEEEcccccccEEEEEccccccEEEEEEccccccEEEEccccccEEEEEEcccccEEEEEEcccEEEEEEEcccccEEEEEccccccEEEEEEEEcccccccEEEEEEcccccEEEEccccccccccccccccEEEEEcccccEEEEEccccEEEEEEccccccccEEEEEEEccEEEEEEEEcccccEEEEEEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEcccccEEEEEccccEEEEEcccHHHHHcccccccEHHHHHHHccEEEEEcccccccccccEEEEEEcccccEEEEEEccccEEEEEEcccEEEEEEEcEEEEEEccccHHEEEEccccccccEEEEccccccEEEEEcccccccEEEEEEcccccccEEEcccccHHHHEEEcccccEEEEEccccEEEEEEEcccccEEEEEEcccccEEEEEEEEcccccccEEEEEEccccEEEEEEEcccccccccccccccHccccccHccccccHHHcccccccccccccccEEEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
msnqsssypvffvsfnqdnsgfalstkdgfkifdsstgrlcyeRAVGAFSIVEMLYSSSLLAivgageqpslsprrlclfnttTGTALRELNFLTSILAVRLNKKRLVIVLREktyiydantlaildtidtvpnlkglcafspslnacflavpasttkgSVLVYNVMELHshceidahqaPLAAIVLSSNGMYIATASEQGTIIRVFLVSEatksysfrrgtypstifslsfgqsmqFQDILVAtsssgslhvfspgfainqrrggrtssilgsilpesvnevldpadhhvlrnafpagvkRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKRA
Flexible Loop (DISEMBL)
msnqsssyPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGeqpslsprrLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREktyiydantlaILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKRA
Low Complexity Region (SEG)
MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKRA
Disordered region (IsUnstruct)
*******YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL****
Disordered Region (DISOPRED)
******S****FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS*********************PESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTK**
Disordered Region (DISEMBL)
MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKRA
Disordered Region (DISPRO)
*******YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA**********SI*GSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKR*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTKRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
Q5QA94	525	Autophagy-related protein	N/A	no	0.716	0.466	0.434	1e-54
Q0CW30	414	Autophagy-related protein	N/A	no	0.730	0.603	0.411	2e-53
Q5BH53	429	Autophagy-related protein	yes	no	0.681	0.543	0.433	9e-53
A2RAG5	415	Autophagy-related protein	yes	no	0.681	0.561	0.426	2e-52
Q2U6D5	413	Autophagy-related protein	yes	no	0.681	0.564	0.426	3e-52
A1DE24	429	Autophagy-related protein	N/A	no	0.681	0.543	0.426	4e-52
A1CBB8	417	Autophagy-related protein	N/A	no	0.681	0.558	0.426	6e-52
Q54NA2	372	Autophagy-related protein	yes	no	0.938	0.862	0.344	8e-52
Q6C044	400	Autophagy-related protein	yes	no	0.941	0.805	0.334	2e-51
A7KAM8	427	Autophagy-related protein	yes	no	0.681	0.545	0.412	3e-51

>sp|Q5QA94|ATG18_PICAN Autophagy-related protein 18 OS=Pichia angusta GN=ATG18 PE=3 SV=1

 Score =  213 bits (543), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 116/267 (43%), Positives = 166/267 (62%), Gaps = 22/267 (8%)

Query: 10  VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ 69
           + F +FNQD S  ++   +G+KI++      CY ++ G+  IVEML+SSSLLAIVG GEQ
Sbjct: 34  INFANFNQDFSCVSVGYSNGYKIYNCEPFGQCYSKSDGSIGIVEMLFSSSLLAIVGMGEQ 93

Query: 70  PSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTI 129
            SLSPRRL + NT   T + EL F  +ILAV+LN++RLV++L E  YIYD N + +L TI
Sbjct: 94  HSLSPRRLKIINTKRQTTICELTFPGAILAVKLNRERLVVLLEETIYIYDINNMRLLHTI 153

Query: 130 DTVPNLKGLCAFSPSLNACFLAVPA-------------------STTKGSVLVYNVMELH 170
           +T  N  GL A SPS    +LA P+                   +   G V++++   L 
Sbjct: 154 ETPSNPNGLIALSPSSENNYLAYPSPQKLAPNPQTEVTLHSNPQTVRNGDVIIFDAKTLQ 213

Query: 171 SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL 230
               I+AH+  LAAI LS +G+ +ATAS++GTIIRVF V+   K Y FRRGTYP+ I+SL
Sbjct: 214 PTSVIEAHRTSLAAIALSKDGLLLATASDKGTIIRVFSVATGIKLYQFRRGTYPTKIYSL 273

Query: 231 SFGQSMQFQDILVATSSSGSLHVFSPG 257
           +F    +F   ++A+S++ ++H+F  G
Sbjct: 274 AFSPDNRF---VIASSATETVHIFRLG 297

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.
Pichia angusta (taxid: 870730)

>sp|Q0CW30|ATG18_ASPTN Autophagy-related protein 18 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=atg18 PE=3 SV=1

 Score =  209 bits (533), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 116/282 (41%), Positives = 172/282 (60%), Gaps = 32/282 (11%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATSKGFRIFTTDPFAKSYETKEGNIAIIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI+T
Sbjct: 58  LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIET 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP----------------------ASTTKGSVLVYNVMEL 169
            PN   +CA SPS + C+LA P                       S T G VL+++ ++L
Sbjct: 118 SPNPNAICALSPSSDNCYLAYPLPQKAPPSSFNPPSHAPPGSTHVSPTTGEVLIFDALKL 177

Query: 170 HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 229
            +   I+AH++PLA I L+S+G  IATAS++GTIIRVF V +  K Y FRRG+ PS I+S
Sbjct: 178 EAINVIEAHRSPLACITLNSDGTLIATASDKGTIIRVFSVPDGHKLYQFRRGSIPSRIYS 237

Query: 230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSI 271
           +SF  +     +L  +SS+ ++H+F      + R G  +S++
Sbjct: 238 MSFNTT---STLLCVSSSTETIHLFKLSHQTSSREGSPSSAL 276

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

>sp|Q5BH53|ATG18_EMENI Autophagy-related protein 18 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=atg18 PE=3 SV=2

 Score =  207 bits (527), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 115/265 (43%), Positives = 164/265 (61%), Gaps = 32/265 (12%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATSKGFRIFTTDPFAKSYETKDGNIAIIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI+T
Sbjct: 58  LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIET 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP----------------------ASTTKGSVLVYNVMEL 169
            PN   LCA SPS   C+LA P                       S T G VL+++ ++L
Sbjct: 118 SPNPNALCALSPSSENCYLAYPLPQKAAPSSFNPPAHAPPGNTHVSPTSGEVLIFDTLKL 177

Query: 170 HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 229
            +   I+AH++PLA I L+S+G  IATAS++GTIIRVF V +  K Y FRRG+ PS IFS
Sbjct: 178 EAINVIEAHRSPLACITLNSDGTLIATASDKGTIIRVFSVPDGHKLYQFRRGSIPSRIFS 237

Query: 230 LSFGQSMQFQDILVATSSSGSLHVF 254
           +SF  +     +L  +SS+ ++H+F
Sbjct: 238 MSFNTT---STLLCVSSSTETIHLF 259

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|A2RAG5|ATG18_ASPNC Autophagy-related protein 18 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=atg18 PE=3 SV=1

 Score =  206 bits (525), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 113/265 (42%), Positives = 165/265 (62%), Gaps = 32/265 (12%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATSKGFRIFTTDPFAKSYETKEGNIAIIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI+T
Sbjct: 58  LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIET 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP----------------------ASTTKGSVLVYNVMEL 169
            PN   LCA SPS + C+LA P                       + T G VL+++ ++L
Sbjct: 118 SPNPNALCALSPSSDNCYLAYPLPQKAPPSTFQPPAHAPPGTTHVTPTSGEVLIFDTLKL 177

Query: 170 HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 229
            +   I+AH++PLA I L+S+G  IATAS++GTIIRVF V +  K Y FRRG+ PS I+S
Sbjct: 178 EAINVIEAHRSPLACITLNSDGTLIATASDKGTIIRVFSVPDGRKLYQFRRGSIPSRIYS 237

Query: 230 LSFGQSMQFQDILVATSSSGSLHVF 254
           +SF  +     +L  +SS+ ++H+F
Sbjct: 238 MSFNTT---STLLCVSSSTETIHLF 259

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

>sp|Q2U6D5|ATG18_ASPOR Autophagy-related protein 18 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=atg18 PE=3 SV=1

 Score =  205 bits (522), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 113/265 (42%), Positives = 165/265 (62%), Gaps = 32/265 (12%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATAKGFRIFTTDPFAKSYETKEGNIAIIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI+T
Sbjct: 58  LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIET 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP----------------------ASTTKGSVLVYNVMEL 169
            PN   +CA SPS + C+LA P                       S T G VL+++ ++L
Sbjct: 118 SPNPSAICALSPSSDNCYLAYPLPHKAPPTSFTPPSHAPPGNTHISPTSGEVLIFDTLKL 177

Query: 170 HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 229
            +   I+AH++PLA I L+S+G  IATAS++GTIIRVF V +  K Y FRRG+ PS I+S
Sbjct: 178 EAINVIEAHRSPLACITLNSDGTLIATASDKGTIIRVFSVPDGHKLYQFRRGSIPSRIYS 237

Query: 230 LSFGQSMQFQDILVATSSSGSLHVF 254
           +SF  +     +L  +SS+ ++H+F
Sbjct: 238 MSFNTT---STLLCVSSSTETIHLF 259

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|A1DE24|ATG18_NEOFI Autophagy-related protein 18 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=atg18 PE=3 SV=1

 Score =  205 bits (522), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 113/265 (42%), Positives = 164/265 (61%), Gaps = 32/265 (12%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATSKGFRIFTTDPFAKSYETKEGNIAIIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI T
Sbjct: 58  LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIQT 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP----------------------ASTTKGSVLVYNVMEL 169
            PN   +CA SPS + C+LA P                       S T G VL+++ ++L
Sbjct: 118 SPNPNAICALSPSSDNCYLAYPLPQKAPPSSFNPPSHTPPGSTHVSPTSGEVLIFDTLKL 177

Query: 170 HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 229
            +   I+AH++PLA I L+S+G  +ATAS++GTIIRVF V +  K Y FRRG+ PS IFS
Sbjct: 178 EAINVIEAHRSPLACITLNSDGTLLATASDKGTIIRVFSVPDGHKLYQFRRGSMPSRIFS 237

Query: 230 LSFGQSMQFQDILVATSSSGSLHVF 254
           +SF  +     +L  +SS+ ++H+F
Sbjct: 238 MSFNTT---STLLCVSSSTETIHLF 259

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|A1CBB8|ATG18_ASPCL Autophagy-related protein 18 OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) GN=atg18 PE=3 SV=1

 Score =  204 bits (520), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 113/265 (42%), Positives = 164/265 (61%), Gaps = 32/265 (12%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +I+EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATSKGFRIFTTDPFAKSYETKEGHIAIIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT   + + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TI T
Sbjct: 58  LSPRRLQITNTKRQSTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLYTIQT 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP----------------------ASTTKGSVLVYNVMEL 169
            PN   +CA SPS + C+LA P                       S T G VL+++ ++L
Sbjct: 118 SPNPNAICALSPSSDNCYLAYPLPQKAPPSSFTPPSHAPPGNTHVSPTSGEVLIFDSLKL 177

Query: 170 HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 229
            +   I+AH++PLA I L+S+G  +ATAS++GTIIRVF V +  K Y FRRG+ PS IFS
Sbjct: 178 EAINVIEAHRSPLACITLNSDGTLLATASDKGTIIRVFSVPDGHKLYQFRRGSMPSRIFS 237

Query: 230 LSFGQSMQFQDILVATSSSGSLHVF 254
           +SF  +     +L  +SS+ ++H+F
Sbjct: 238 MSFNTT---STLLCVSSSTETIHLF 259

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC 3887 / NRRL 1) (taxid: 344612)

>sp|Q54NA2|ATG18_DICDI Autophagy-related protein 18 OS=Dictyostelium discoideum GN=atg18 PE=3 SV=1

 Score =  204 bits (519), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 124/360 (34%), Positives = 208/360 (57%), Gaps = 39/360 (10%)

Query: 10  VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ 69
           + F++FNQD S  A+ T +G+KIF+S    L Y ++ G   +VEML+S+SL++IVG+G+ 
Sbjct: 11  ILFLNFNQDFSCIAVGTPEGYKIFNSDPYTLYYSQSNGGAGLVEMLFSTSLVSIVGSGDG 70

Query: 70  PSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTI 129
            + S RRL + N      + +LNF+T+IL+V++N+KR+V+++  K +IYD N + +L+T 
Sbjct: 71  -NTSQRRLLINNIKNNIPICDLNFVTAILSVKMNRKRIVVIMETKIHIYDINNMKLLETR 129

Query: 130 DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS 189
           +   N KGLCA SPS N  ++  PAS   G++LV +V+ L +   I AH++ ++A+ LS 
Sbjct: 130 EIASNPKGLCALSPS-NTNYIVYPASQNNGNILVMDVLTLETVNLIQAHKSQISALALSQ 188

Query: 190 NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG 249
           +G  +ATAS++GT+IRVF +  A KS SFRRG+ P+ I S++F    ++   L  +S +G
Sbjct: 189 DGTLLATASDKGTVIRVFALPYANKSLSFRRGSIPAIIHSMTFSLDGRY---LCVSSDTG 245

Query: 250 SLHVF-------------------SPGFAINQRRGGRTSSILGSILPESVNEVLDPADH- 289
           ++H+F                   SP   +     G  +S + S LPE +++V +P+   
Sbjct: 246 TIHIFKIDFSSSNSSSFHQAQPSSSPSGGMMGLNFGGLTSKMSSYLPEVISQVWEPSRDF 305

Query: 290 -HVLRNAFPAGV--------KRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLTK 340
            H+     P G+           +  V+T +  +++Y F  +        L +EF+LL +
Sbjct: 306 AHI---KIPPGIPSICALMQNNKTAMVLTADSLYMQYNF--DESVGGELKLAKEFSLLME 360

May be involved in cytoplasm to vacuole transport and autophagy.

Dictyostelium discoideum (taxid: 44689)

>sp|Q6C044|ATG18_YARLI Autophagy-related protein 18 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=ATG18 PE=3 SV=1

 Score =  203 bits (516), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/389 (33%), Positives = 206/389 (52%), Gaps = 67/389 (17%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FVSFNQD S  ++ T  G+KI++      C+ +A G   IVEML+ +SL+A+VG G+QP 
Sbjct: 7   FVSFNQDYSCVSVGTPQGYKIYNCDPFGKCFSKADGGMGIVEMLFCTSLIAVVGMGDQPQ 66

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
            SPRRL + NT   + + EL F T++L VRLN++RLV++L+++ YIYD + + ++ TI+T
Sbjct: 67  NSPRRLKIVNTKRQSTICELTFPTAVLGVRLNRQRLVVLLQDQIYIYDISNMKLVHTIET 126

Query: 132 VPNLKGLCAFSPSL--NACFL----AVPASTT---------------KGSVLVYNVMELH 170
            PN   +CA S S   N  +L      P+ST                KG V +++   L 
Sbjct: 127 SPNPGAVCALSASSSDNNNYLVYPFPAPSSTAFNPGENNINDSSPNRKGDVTIFDCNSLQ 186

Query: 171 SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL 230
               ++AH+ PLA + L+S+G  +ATAS++GTIIRVF V +A K Y FRRGTYP+ IFS+
Sbjct: 187 PVNVVEAHKTPLACLSLNSDGTLLATASDKGTIIRVFSVPKAQKLYEFRRGTYPAQIFSI 246

Query: 231 SFGQSMQFQDILVATSSSGSLHVF--------------------------SPGFAINQRR 264
           +F  +    +++  +S++ ++H+F                            G A   R+
Sbjct: 247 NFNLA---SNLMAVSSATETVHIFQLEAGVSSTPEVPQDTELAIPTRTPQQKGMASVFRK 303

Query: 265 GGRT-----SSILGSILPESVNEVLDPADH--HVLRNAFPAGVKRASVS--------VIT 309
             R+     +  +GS LP++   + +P      + + + P      SV+        V+T
Sbjct: 304 SSRSLGKGLAGAVGSYLPQTFTGMWEPLRDFAFIKQTSLPGTRSVVSVTSTNPPQVLVVT 363

Query: 310 YNGYFVEYIFSINNCCESTWTLDREFNLL 338
             GYF +Y   +    E    L R+++LL
Sbjct: 364 LEGYFYQYTLDLEKGGE--CDLIRQYSLL 390

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|A7KAM8|ATG18_PENCW Autophagy-related protein 18 OS=Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) GN=atg18 PE=3 SV=1

 Score =  202 bits (515), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 109/264 (41%), Positives = 163/264 (61%), Gaps = 31/264 (11%)

Query: 12  FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
           FV+FNQD S  A++T  GF+IF +      YE   G  +++EML+S+SL+A++       
Sbjct: 5   FVTFNQDYSYLAVATSKGFQIFTTEPFAKSYEAKEGNIAVIEMLFSTSLVALI------- 57

Query: 72  LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
           LSPRRL + NT     + EL F T++LAV+LN+KRLVIVL ++ Y+YD  T+ +L TIDT
Sbjct: 58  LSPRRLQIQNTKRQCTICELTFPTTVLAVKLNRKRLVIVLEDQIYLYDIQTMKLLSTIDT 117

Query: 132 VPNLKGLCAFSPSLNACFLAVP---------------------ASTTKGSVLVYNVMELH 170
            PN   +CA +PS   C++A P                      S T G VL+++ ++L 
Sbjct: 118 SPNPNAICALAPSSENCYMAYPLPQKAPAAASTPAHAPPGTTHVSPTTGDVLIFDAVKLE 177

Query: 171 SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL 230
           +   I+AH++PLA I L+S+G  +ATAS++GTIIR+F V +  K Y FRRG+ PS I+S+
Sbjct: 178 AINVIEAHRSPLALIALNSDGTLLATASDKGTIIRIFSVPDGHKLYQFRRGSMPSRIYSM 237

Query: 231 SFGQSMQFQDILVATSSSGSLHVF 254
           SF  +     +L  +SS+ ++H+F
Sbjct: 238 SFNTT---STLLCVSSSTETVHIF 258

Required for cytoplasm to vacuole transport (Cvt) vesicle formation, pexophagy and autophagy.

Penicillium chrysogenum (strain ATCC 28089 / DSM 1075 / Wisconsin 54-1255) (taxid: 500485)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
255586718	349	WD-repeat protein, putative [Ricinus com	0.877	0.859	0.827	1e-142
359484818	368	PREDICTED: autophagy-related protein 18-	0.985	0.915	0.717	1e-141
297743710	394	unnamed protein product [Vitis vinifera]	0.985	0.855	0.717	1e-141
356562531	368	PREDICTED: autophagy-related protein 18-	0.991	0.921	0.684	1e-139
356500701	368	PREDICTED: autophagy-related protein 18-	0.991	0.921	0.681	1e-137
357479935	372	Autophagy-related protein [Medicago trun	0.964	0.887	0.662	1e-134
224143877	297	predicted protein [Populus trichocarpa]	0.830	0.956	0.781	1e-124
30688712	312	autophagy-related protein 18b [Arabidops	0.833	0.913	0.711	1e-120
297798918	312	hypothetical protein ARALYDRAFT_913426 [	0.833	0.913	0.708	1e-120
449453940	316	PREDICTED: autophagy-related protein 18-	0.827	0.895	0.683	1e-116

>gi|255586718|ref|XP_002533983.1| WD-repeat protein, putative [Ricinus communis] gi|223526034|gb|EEF28403.1| WD-repeat protein, putative [Ricinus communis]

 Score =  509 bits (1312), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 249/301 (82%), Positives = 274/301 (91%), Gaps = 1/301 (0%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL 60
           MS+ SS+YP+   SFNQ+N+GFA+ST+DGFKI D +TGRLCYER VGAF IVEMLYSSSL
Sbjct: 1   MSSHSSNYPILSASFNQENTGFAVSTRDGFKILDPNTGRLCYERGVGAFIIVEMLYSSSL 60

Query: 61  LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDA 120
           LAIVGAGEQPSLSPRRLCLFNT+TGTALRELNFLTSILAVRLN+KRLV++L+EKT+IYD+
Sbjct: 61  LAIVGAGEQPSLSPRRLCLFNTSTGTALRELNFLTSILAVRLNRKRLVVLLQEKTFIYDS 120

Query: 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA 180
           NTLAILDTIDTVPN+KGLCAFSPSL+ CFLA+PASTTKGSVLVYNVMEL SHCEIDAH+A
Sbjct: 121 NTLAILDTIDTVPNVKGLCAFSPSLDGCFLALPASTTKGSVLVYNVMELQSHCEIDAHRA 180

Query: 181 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 240
           PLAA+ LSSNGMYIATASEQGTIIRV LV EATKSYSFRRGTYPSTIFSLSFG S Q  D
Sbjct: 181 PLAAVALSSNGMYIATASEQGTIIRVHLVQEATKSYSFRRGTYPSTIFSLSFGPSKQLPD 240

Query: 241 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 300
           ILVA+SSSGS+HVFS GF INQ R  R+SS LGSILP+SVN+ LDPA HHVL NA PAGV
Sbjct: 241 ILVASSSSGSVHVFSLGFTINQ-RSRRSSSFLGSILPDSVNDALDPAHHHVLHNAVPAGV 299

Query: 301 K 301
           K
Sbjct: 300 K 300

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484818|ref|XP_003633169.1| PREDICTED: autophagy-related protein 18-like [Vitis vinifera]

 Score =  508 bits (1307), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 259/361 (71%), Positives = 293/361 (81%), Gaps = 24/361 (6%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL 60
           M+N SSSYP+   SFNQD S FA+ T+DGFK+FDS TG L YERA+G F IVEML+SSSL
Sbjct: 1   MANHSSSYPILCASFNQDTSYFAIGTRDGFKVFDSETGTLRYERAIGGFIIVEMLFSSSL 60

Query: 61  LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDA 120
           LAIVGAGEQPSLSPRRLCLFNTTTG ALRELNFLTS+LA+RLN+KRLV+VL+EKTYIYD 
Sbjct: 61  LAIVGAGEQPSLSPRRLCLFNTTTGAALRELNFLTSVLAIRLNRKRLVVVLQEKTYIYDL 120

Query: 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA 180
           N+L+ILDTIDTVPN KGLCAFSPSL+ CFLA+PASTT+GSVLVYNVMELHSHCEIDAH++
Sbjct: 121 NSLSILDTIDTVPNSKGLCAFSPSLDGCFLALPASTTRGSVLVYNVMELHSHCEIDAHRS 180

Query: 181 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 240
           PLAAIV S NGMYIATASEQGTIIRV L+SEATKSYSFRRG YPSTIFSLSFG S QF D
Sbjct: 181 PLAAIVFSPNGMYIATASEQGTIIRVHLISEATKSYSFRRGAYPSTIFSLSFGPSTQFPD 240

Query: 241 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 300
           +LVATSSSGS+H FS G  +NQR   R+SS  GSI+P+SVN+VLDPA HHVL N  PAGV
Sbjct: 241 VLVATSSSGSVHAFSLGLGMNQRS-RRSSSFFGSIIPDSVNDVLDPA-HHVLHNVVPAGV 298

Query: 301 K----------------------RASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL 338
           K                      RA+VS+IT++G F EY   IN   ES+W L+R F+LL
Sbjct: 299 KSYAVIRKVDRVPGTSISESVAYRATVSIITHSGSFQEYTLIINQKNESSWRLERRFDLL 358

Query: 339 T 339
           T
Sbjct: 359 T 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743710|emb|CBI36593.3| unnamed protein product [Vitis vinifera]

 Score =  506 bits (1303), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 259/361 (71%), Positives = 293/361 (81%), Gaps = 24/361 (6%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL 60
           M+N SSSYP+   SFNQD S FA+ T+DGFK+FDS TG L YERA+G F IVEML+SSSL
Sbjct: 1   MANHSSSYPILCASFNQDTSYFAIGTRDGFKVFDSETGTLRYERAIGGFIIVEMLFSSSL 60

Query: 61  LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDA 120
           LAIVGAGEQPSLSPRRLCLFNTTTG ALRELNFLTS+LA+RLN+KRLV+VL+EKTYIYD 
Sbjct: 61  LAIVGAGEQPSLSPRRLCLFNTTTGAALRELNFLTSVLAIRLNRKRLVVVLQEKTYIYDL 120

Query: 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA 180
           N+L+ILDTIDTVPN KGLCAFSPSL+ CFLA+PASTT+GSVLVYNVMELHSHCEIDAH++
Sbjct: 121 NSLSILDTIDTVPNSKGLCAFSPSLDGCFLALPASTTRGSVLVYNVMELHSHCEIDAHRS 180

Query: 181 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 240
           PLAAIV S NGMYIATASEQGTIIRV L+SEATKSYSFRRG YPSTIFSLSFG S QF D
Sbjct: 181 PLAAIVFSPNGMYIATASEQGTIIRVHLISEATKSYSFRRGAYPSTIFSLSFGPSTQFPD 240

Query: 241 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 300
           +LVATSSSGS+H FS G  +NQR   R+SS  GSI+P+SVN+VLDPA HHVL N  PAGV
Sbjct: 241 VLVATSSSGSVHAFSLGLGMNQRS-RRSSSFFGSIIPDSVNDVLDPA-HHVLHNVVPAGV 298

Query: 301 K----------------------RASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL 338
           K                      RA+VS+IT++G F EY   IN   ES+W L+R F+LL
Sbjct: 299 KSYAVIRKVDRVPGTSISESVAYRATVSIITHSGSFQEYTLIINQKNESSWRLERRFDLL 358

Query: 339 T 339
           T
Sbjct: 359 T 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562531|ref|XP_003549523.1| PREDICTED: autophagy-related protein 18-like [Glycine max]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/361 (68%), Positives = 292/361 (80%), Gaps = 22/361 (6%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL 60
           M+N SSS  +   SFNQD+S FA+ T+DG +IFD++TGRLCYERAVGAF I EML+SSSL
Sbjct: 1   MANHSSSPSLLCASFNQDHSYFAVGTRDGVRIFDTNTGRLCYERAVGAFVIAEMLFSSSL 60

Query: 61  LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDA 120
           LAIVGAG+QPSLSPRRLCLFNTTTG ALRELNFLTSILAVR+N++RL+++L++K Y+Y+ 
Sbjct: 61  LAIVGAGDQPSLSPRRLCLFNTTTGAALRELNFLTSILAVRMNRQRLIVILQDKAYVYEI 120

Query: 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA 180
           N+L ILDTIDTVPN+KGLCAFSP L+AC+LA+PASTTKGS L+YNVM+ H HCEI+AH++
Sbjct: 121 NSLTILDTIDTVPNIKGLCAFSPCLDACYLALPASTTKGSALLYNVMDCHLHCEIEAHRS 180

Query: 181 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 240
           PLAA+VLSSNGMYIATASEQGTIIRV LVS+ATKSYSFRRGTYPSTIFSLSFG S Q  D
Sbjct: 181 PLAAMVLSSNGMYIATASEQGTIIRVHLVSDATKSYSFRRGTYPSTIFSLSFGPSKQLPD 240

Query: 241 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 300
           IL A+SSSGS+H+F+ GFA +  R  R+S  LGSI+P +VN+VLDPA HHVL NA  AGV
Sbjct: 241 ILAASSSSGSIHLFTLGFASHPSRSKRSSGFLGSIIPGAVNDVLDPAYHHVLHNAVSAGV 300

Query: 301 K----------------------RASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL 338
           K                      RA +SVITYNGYF EY  SI+   E +W+L REFNLL
Sbjct: 301 KSHAIIRKVENVTNSSSSELLACRAIMSVITYNGYFQEYNLSIDAQNELSWSLVREFNLL 360

Query: 339 T 339
           T
Sbjct: 361 T 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500701|ref|XP_003519170.1| PREDICTED: autophagy-related protein 18-like [Glycine max]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 246/361 (68%), Positives = 293/361 (81%), Gaps = 22/361 (6%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL 60
           M+NQSSS  +   SFNQD+S FA+ T+DG +IFD++TGRLCYERAVGAF I EML+SS+L
Sbjct: 1   MTNQSSSPSLLCASFNQDHSYFAVGTRDGVRIFDANTGRLCYERAVGAFVIAEMLFSSNL 60

Query: 61  LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDA 120
           LAIVGAG QPSLSPRRLCLFNTTTG ALRELNFLTSILAVR+N++RL+++L++K YIY+ 
Sbjct: 61  LAIVGAGHQPSLSPRRLCLFNTTTGAALRELNFLTSILAVRMNRQRLIVILQDKAYIYEI 120

Query: 121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA 180
           N+L ILDTIDTVPN+KGLCAFSPSL+AC+LA+PASTTKGS L+YNVME H HCEI+AH++
Sbjct: 121 NSLTILDTIDTVPNIKGLCAFSPSLDACYLALPASTTKGSALLYNVMECHLHCEIEAHRS 180

Query: 181 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD 240
           PLAA+VLSSNGMYIATASEQGTIIRV LVS+ATKSYSFRRGTYPSTIFS+SFG S +  D
Sbjct: 181 PLAAMVLSSNGMYIATASEQGTIIRVHLVSDATKSYSFRRGTYPSTIFSVSFGPSKRLPD 240

Query: 241 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV 300
           IL A+SSSGS+H+F+ GFA       R+S  LGSI+P++V++VLDPA HHVL NA PAGV
Sbjct: 241 ILAASSSSGSIHLFTLGFASRPSSSKRSSGFLGSIIPDAVHDVLDPAHHHVLHNAVPAGV 300

Query: 301 K----------------------RASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL 338
           K                      RA +SVITYNGYF EY  SI+   E +W+L R+FNLL
Sbjct: 301 KSYAVIRKVENVTNSSSSELLACRAIMSVITYNGYFQEYNLSIDAHNELSWSLGRQFNLL 360

Query: 339 T 339
           T
Sbjct: 361 T 361

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357479935|ref|XP_003610253.1| Autophagy-related protein [Medicago truncatula] gi|355511308|gb|AES92450.1| Autophagy-related protein [Medicago truncatula]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 234/353 (66%), Positives = 287/353 (81%), Gaps = 23/353 (6%)

Query: 9   PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGE 68
           P+   SFNQDNS FA+ TKDGFKIFD++TG+LCY+R VGAFSIVEML++SSLLAIVGAG+
Sbjct: 14  PILCASFNQDNSCFAIGTKDGFKIFDTNTGKLCYQRDVGAFSIVEMLFTSSLLAIVGAGD 73

Query: 69  QPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDT 128
           QPSLSPRRLCLFNTTTG  LRELNFLTSILA+R+N+KRL+++L++K Y+Y+ N+L+ILDT
Sbjct: 74  QPSLSPRRLCLFNTTTGAPLRELNFLTSILAIRMNRKRLIVILQDKAYVYEINSLSILDT 133

Query: 129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLS 188
            DTVPN+KGLCA SP L+AC++A+PASTTKGS L+YNVM+ + HCEI+AH++PLAA+V S
Sbjct: 134 FDTVPNIKGLCALSPCLDACYMALPASTTKGSALLYNVMDCNLHCEIEAHRSPLAAMVFS 193

Query: 189 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS 248
           SNGMYIATASEQGT++RV LVS+ATKSYSFRRG+Y STIFSLSFG S Q  DIL ATSSS
Sbjct: 194 SNGMYIATASEQGTLVRVHLVSDATKSYSFRRGSYSSTIFSLSFGPSKQLPDILAATSSS 253

Query: 249 GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVK------- 301
           GS+H+F+ GFA +  R  R+S  LGSI+P++VN+VLDPA HHVL NA PAGVK       
Sbjct: 254 GSIHLFTLGFA-SHPRSKRSSGFLGSIIPDAVNDVLDPAYHHVLHNAVPAGVKSSAVIRK 312

Query: 302 ---------------RASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLLT 339
                          RA++ VITYNGYF EY  SI+   + +W+L+RE NLLT
Sbjct: 313 VENVTDTSSSELLACRANMCVITYNGYFQEYNLSIDAHQKLSWSLERETNLLT 365

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143877|ref|XP_002325106.1| predicted protein [Populus trichocarpa] gi|222866540|gb|EEF03671.1| predicted protein [Populus trichocarpa]

 Score =  451 bits (1159), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 225/288 (78%), Positives = 251/288 (87%), Gaps = 4/288 (1%)

Query: 54  MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILA---VRLNKKRLVIV 110
           MLYSSSLLAIVG GEQPSLSPRRLCLFNTTTGTALRELNFLTS+LA   V ++  RLV+V
Sbjct: 1   MLYSSSLLAIVGGGEQPSLSPRRLCLFNTTTGTALRELNFLTSVLANYSVVVDHCRLVVV 60

Query: 111 LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH 170
           L+EKTYIYD NTLAILD IDTVPN+KGLCAFSPSL+ CFLA+P+STTKGSVLVYNVMELH
Sbjct: 61  LQEKTYIYDLNTLAILDAIDTVPNVKGLCAFSPSLDGCFLALPSSTTKGSVLVYNVMELH 120

Query: 171 SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL 230
           SHCEIDAH++PLAAIV+S NGMYIATASEQGTIIRV LVSEATKSYSFRRGTYPSTIFSL
Sbjct: 121 SHCEIDAHRSPLAAIVMSFNGMYIATASEQGTIIRVHLVSEATKSYSFRRGTYPSTIFSL 180

Query: 231 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH 290
           SFG S Q  +ILVA SSSGS+HVFS G AINQ RG R+SS LGS+LP+SVN+  DPA H 
Sbjct: 181 SFGPSTQLPEILVALSSSGSIHVFSLGLAINQ-RGRRSSSFLGSLLPDSVNDAFDPAHHR 239

Query: 291 VLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL 338
           VL+ A PAGVKRA++SVIT+NG+F+EY   +N   ES W L+ EFNLL
Sbjct: 240 VLQKAVPAGVKRATLSVITFNGHFLEYTVDVNTQNESKWRLESEFNLL 287

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30688712|ref|NP_194780.2| autophagy-related protein 18b [Arabidopsis thaliana] gi|23296501|gb|AAN13072.1| unknown protein [Arabidopsis thaliana] gi|332660374|gb|AEE85774.1| autophagy-related protein 18b [Arabidopsis thaliana]

 Score =  436 bits (1121), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 220/309 (71%), Positives = 246/309 (79%), Gaps = 24/309 (7%)

Query: 54  MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLRE 113
           MLYSS LLAIVGAGEQ SLSPRRLCLF TTTG  LRELNFLTSILAVR+NKKRLV+VL E
Sbjct: 1   MLYSSDLLAIVGAGEQASLSPRRLCLFKTTTGLPLRELNFLTSILAVRMNKKRLVVVLLE 60

Query: 114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC 173
           KT++YD NTL +LDTIDTVPN KGL AFSPSL  C+LAVPASTTKGSVLVYNVM+L SH 
Sbjct: 61  KTFVYDLNTLVMLDTIDTVPNPKGLSAFSPSLEGCYLAVPASTTKGSVLVYNVMDLQSHS 120

Query: 174 EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 233
           EIDAH++PLAAI LSSNGMYIAT SEQGT+IRV LVSEATKSYSFRRGTYPSTI+SLSFG
Sbjct: 121 EIDAHRSPLAAIALSSNGMYIATGSEQGTLIRVHLVSEATKSYSFRRGTYPSTIYSLSFG 180

Query: 234 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLR 293
            S Q  DIL+ATSSSGS+H FS   AINQ R  R++S LGS+LP+SV++ LDPA HHVL+
Sbjct: 181 PSTQLPDILIATSSSGSIHAFSLSLAINQ-RSKRSTSFLGSVLPDSVSDALDPAHHHVLQ 239

Query: 294 NAFPAGVK-----------------------RASVSVITYNGYFVEYIFSINNCCESTWT 330
           NA  +G++                       RA+VSVITYNGYF EY  SINN  ES WT
Sbjct: 240 NAVSSGIRSYAVVRKIDKLEGTSSPSHFTSLRATVSVITYNGYFQEYTLSINNKNESLWT 299

Query: 331 LDREFNLLT 339
           L+REFNL +
Sbjct: 300 LEREFNLFS 308

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297798918|ref|XP_002867343.1| hypothetical protein ARALYDRAFT_913426 [Arabidopsis lyrata subsp. lyrata] gi|297313179|gb|EFH43602.1| hypothetical protein ARALYDRAFT_913426 [Arabidopsis lyrata subsp. lyrata]

 Score =  436 bits (1120), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 219/309 (70%), Positives = 246/309 (79%), Gaps = 24/309 (7%)

Query: 54  MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLRE 113
           MLYSS LLAIVGAGEQ SLSPRRLCLF TTTG  LRELNFLTSILAVR+NKKRLV+VL E
Sbjct: 1   MLYSSDLLAIVGAGEQASLSPRRLCLFKTTTGLPLRELNFLTSILAVRMNKKRLVVVLLE 60

Query: 114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC 173
           KT++YD NTL +LDTIDTVPN KGL AFSPSL  C+LAVPAS TKGSVLVYNVM+L SH 
Sbjct: 61  KTFVYDLNTLVMLDTIDTVPNPKGLSAFSPSLEGCYLAVPASATKGSVLVYNVMDLQSHS 120

Query: 174 EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 233
           EIDAH++PLAAI LSSNGMYIATASEQGT+IRV LVSEATKSYSFRRGTYPSTI+SLSFG
Sbjct: 121 EIDAHRSPLAAIALSSNGMYIATASEQGTLIRVHLVSEATKSYSFRRGTYPSTIYSLSFG 180

Query: 234 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLR 293
            S Q  DIL+ATSSSGS+H FS   AINQ R  R++S LGS+LP+SV++ LDPA HHVL+
Sbjct: 181 PSTQLPDILIATSSSGSIHAFSLSLAINQ-RSKRSTSFLGSVLPDSVSDALDPAHHHVLQ 239

Query: 294 NAFPAGVK-----------------------RASVSVITYNGYFVEYIFSINNCCESTWT 330
           NA  +G++                       RA+VSVITYNGYF EY  SINN  ES WT
Sbjct: 240 NAVSSGIRSYAVVRKIDKLEGTSSPSQFTSLRATVSVITYNGYFQEYTLSINNKNESLWT 299

Query: 331 LDREFNLLT 339
           ++REFNL +
Sbjct: 300 MEREFNLFS 308

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453940|ref|XP_004144714.1| PREDICTED: autophagy-related protein 18-like [Cucumis sativus] gi|449506223|ref|XP_004162686.1| PREDICTED: autophagy-related protein 18-like [Cucumis sativus]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/310 (68%), Positives = 250/310 (80%), Gaps = 27/310 (8%)

Query: 54  MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLRE 113
           ML+SS+L+AIVGAGEQPSLSPRRLCLFNT +G ALRELNFLTSILAVR+N+KRLV++L++
Sbjct: 1   MLFSSNLVAIVGAGEQPSLSPRRLCLFNTMSGNALRELNFLTSILAVRMNRKRLVVLLQD 60

Query: 114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC 173
           KTYIYD N+L ILDTIDTVPN KG CAFSPSL+ CFLA+PAS TKGS+L+YNVMEL  HC
Sbjct: 61  KTYIYDINSLTILDTIDTVPNSKGTCAFSPSLDGCFLAIPASITKGSLLLYNVMELQLHC 120

Query: 174 EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 233
           EI+AH+APLA +VLSSNGMYIATASEQGT+IRV LVSEATKSYSFRRG+YPSTIFSLSFG
Sbjct: 121 EIEAHRAPLATMVLSSNGMYIATASEQGTMIRVHLVSEATKSYSFRRGSYPSTIFSLSFG 180

Query: 234 QSMQFQDILVATSSSGSLHVFSPGFAINQ--RRGGRTSSILGSILPESVNEVLDPADHHV 291
              Q  +ILVATSSSGS+HVF  GFAINQ  RR G     LGSI+P+S+++ LDPA HH+
Sbjct: 181 PCSQVPEILVATSSSGSVHVFPLGFAINQSSRRSG---GFLGSIMPDSISDALDPAHHHI 237

Query: 292 LRNAFPAGVK----------------------RASVSVITYNGYFVEYIFSINNCCESTW 329
           + NA PAG+K                      RA++++ITYNGYF EY  S+NN  E + 
Sbjct: 238 VHNAAPAGIKSYAVIRKVDRVSDPSTSEIVACRATLAIITYNGYFQEYTLSLNNHNEFSR 297

Query: 330 TLDREFNLLT 339
           +LDREFNL+T
Sbjct: 298 SLDREFNLMT 307

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2118801	312	ATG18B "AT4G30510" [Arabidopsi	0.733	0.804	0.765	3.9e-110
UNIPROTKB|Q6K9M2	374	OJ1249_F12.5 "Os02g0791800 pro	0.874	0.799	0.569	7.5e-89
SGD|S000001917	500	ATG18 "Phosphoinositide bindin	0.435	0.298	0.483	1.3e-56
UNIPROTKB|Q75F47	537	ATG18 "Autophagy-related prote	0.423	0.270	0.466	4.3e-55
UNIPROTKB|A8I0Q7	455	CHLREDRAFT_187711 "Predicted p	0.877	0.659	0.363	1.4e-52
UNIPROTKB|Q524W4	469	ATG18 "Autophagy-related prote	0.394	0.287	0.429	2.1e-49
DICTYBASE|DDB_G0285375	372	atg18 "autophagy protein 18" [	0.944	0.868	0.355	4.1e-49
CGD|CAL0005165	558	orf19.6064 [Candida albicans (	0.447	0.274	0.419	5.7e-49
UNIPROTKB|Q5ZHN3	436	WIPI2 "WD repeat domain phosph	0.716	0.561	0.393	7.5e-42
RGD|1359154	445	Wipi2 "WD repeat domain, phosp	0.716	0.550	0.389	9.5e-42

TAIR|locus:2118801 ATG18B "AT4G30510" [Arabidopsis thaliana (taxid:3702)]

 Score = 965 (344.8 bits), Expect = 3.9e-110, Sum P(2) = 3.9e-110
 Identities = 193/252 (76%), Positives = 217/252 (86%)

Query:    54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLRE 113
             MLYSS LLAIVGAGEQ SLSPRRLCLF TTTG  LRELNFLTSILAVR+NKKRLV+VL E
Sbjct:     1 MLYSSDLLAIVGAGEQASLSPRRLCLFKTTTGLPLRELNFLTSILAVRMNKKRLVVVLLE 60

Query:   114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC 173
             KT++YD NTL +LDTIDTVPN KGL AFSPSL  C+LAVPASTTKGSVLVYNVM+L SH 
Sbjct:    61 KTFVYDLNTLVMLDTIDTVPNPKGLSAFSPSLEGCYLAVPASTTKGSVLVYNVMDLQSHS 120

Query:   174 EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG 233
             EIDAH++PLAAI LSSNGMYIAT SEQGT+IRV LVSEATKSYSFRRGTYPSTI+SLSFG
Sbjct:   121 EIDAHRSPLAAIALSSNGMYIATGSEQGTLIRVHLVSEATKSYSFRRGTYPSTIYSLSFG 180

Query:   234 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLR 293
              S Q  DIL+ATSSSGS+H FS   AINQR   R++S LGS+LP+SV++ LDPA HHVL+
Sbjct:   181 PSTQLPDILIATSSSGSIHAFSLSLAINQR-SKRSTSFLGSVLPDSVSDALDPAHHHVLQ 239

Query:   294 NAFPAGVKRASV 305
             NA  +G++  +V
Sbjct:   240 NAVSSGIRSYAV 251

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IBA

GO:0008150 "biological_process" evidence=ND

GO:0016236 "macroautophagy" evidence=IBA

GO:0070772 "PAS complex" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q6K9M2 OJ1249_F12.5 "Os02g0791800 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 173/304 (56%), Positives = 230/304 (75%)

Query:     1 MSNQSSSYP---VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYS 57
             M++ SS  P   +   SFNQDNS F + TKDGF+IFD+ TG+L Y++ +G    +EM + 
Sbjct:     1 MASSSSPPPPPQIRCASFNQDNSLFYVGTKDGFRIFDAHTGKLHYQKNIGGIGNMEMYFR 60

Query:    58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYI 117
             +++LAIVG GEQP LSPR L L +T      ++LNF TS+LAVRL++ RLV+VL+++T+I
Sbjct:    61 TNILAIVGTGEQPVLSPRCLRLIDTVAAVTKKDLNFKTSVLAVRLSRTRLVVVLQDRTFI 120

Query:   118 YDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA 177
             YD N+  IL+ I+TVPN KGLCAF+P+  AC+LA+PAST+KGS LVY   E    C+IDA
Sbjct:   121 YDVNSTTILEEIETVPNTKGLCAFAPNSEACYLAIPASTSKGSALVYKASEPELICQIDA 180

Query:   178 HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ 237
             H++PLAA+  SSNG Y+ATAS +GTIIRVFLV++ATKS+SFRRGTYPSTI+SLSFG S  
Sbjct:   181 HESPLAAMAFSSNGTYLATASGKGTIIRVFLVAQATKSHSFRRGTYPSTIYSLSFGPSDD 240

Query:   238 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFP 297
               D+LVATSSSGSLH+F    A N+R   +TS +LGS++P ++   LDPA+HH++ N  P
Sbjct:   241 LPDVLVATSSSGSLHMFFLDAARNRRN--QTSKLLGSMIPGAITRALDPANHHIIHNVIP 298

Query:   298 AGVK 301
             AG+K
Sbjct:   299 AGIK 302

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0000421 "autophagic vacuole membrane" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

SGD|S000001917 ATG18 "Phosphoinositide binding protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 355 (130.0 bits), Expect = 1.3e-56, Sum P(3) = 1.3e-56
 Identities = 72/149 (48%), Positives = 103/149 (69%)

Query:     6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVG 65
             SS  + F++FNQ  +  +L T  GFKIF+       Y    G ++IVEML+S+SLLA+VG
Sbjct:     4 SSPTINFINFNQTGTCISLGTSKGFKIFNCEPFGKFYSEDSGGYAIVEMLFSTSLLALVG 63

Query:    66 AGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAI 125
              G+QP+LSPRRL + NT   + + E+ F TSIL+V++NK RLV++L+E+ YIYD NT+ +
Sbjct:    64 IGDQPALSPRRLRIINTKKHSIICEVTFPTSILSVKMNKSRLVVLLQEQIYIYDINTMRL 123

Query:   126 LDTIDTVPNLKGLCAFSPSLNACFLAVPA 154
             L TI+T PN +GL A SPS+   +L  P+
Sbjct:   124 LHTIETNPNPRGLMAMSPSVANSYLVYPS 152

GO:0045324 "late endosome to vacuole transport" evidence=IMP

GO:0006914 "autophagy" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IDA

GO:0006624 "vacuolar protein processing" evidence=IMP;IDA

GO:0043130 "ubiquitin binding" evidence=IDA

GO:0000407 "pre-autophagosomal structure" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IMP

GO:0070772 "PAS complex" evidence=IDA;IPI

GO:0030242 "peroxisome degradation" evidence=IMP

GO:0016236 "macroautophagy" evidence=IDA;IMP

GO:0005768 "endosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IEA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0032258 "CVT pathway" evidence=IMP;IDA

GO:0035091 "phosphatidylinositol binding" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q75F47 ATG18 "Autophagy-related protein 18" [Ashbya gossypii ATCC 10895 (taxid:284811)]

 Score = 328 (120.5 bits), Expect = 4.3e-55, Sum P(3) = 4.3e-55
 Identities = 69/148 (46%), Positives = 101/148 (68%)

Query:     9 PVF-FVSFNQDNSGFALSTKDGFKIFDSST-GRLCYERAVGAFSIVEMLYSSSLLAIVGA 66
             PV  F++FNQ  +  ++ T +G KIF+    GR  Y    G   IVEML+S+SLLA+VG 
Sbjct:     7 PVINFINFNQTGTCISMGTSEGLKIFNCDPFGRF-YSDEDGGCGIVEMLFSTSLLAVVGI 65

Query:    67 GEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAIL 126
             G+ PS+SPRRL + NT   + + E+ F T+ILAV++N+ RLV++L+E+ YIYD N++ +L
Sbjct:    66 GDNPSMSPRRLRILNTKRHSVICEVTFPTTILAVKMNRSRLVVLLQEQIYIYDINSMRLL 125

Query:   127 DTIDTVPNLKGLCAFSPSLNACFLAVPA 154
              TI+T  N +GL + SPSL   +LA P+
Sbjct:   126 YTIETSSNPRGLISMSPSLENNYLAYPS 153

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0000329 "fungal-type vacuole membrane" evidence=IBA

GO:0000421 "autophagic vacuole membrane" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|A8I0Q7 CHLREDRAFT_187711 "Predicted protein" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 517 (187.1 bits), Expect = 1.4e-52, Sum P(2) = 1.4e-52
 Identities = 113/311 (36%), Positives = 183/311 (58%)

Query:     4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAI 63
             Q S   V +V+FNQD +  A++++ G  +++  T +LC+  A+GA   VEML+ +SL+  
Sbjct:     7 QGSKSGVLYVTFNQDCTCVAIASQQGLHVYNVDTHKLCFRHAIGAVRAVEMLFCTSLIGF 66

Query:    64 VGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTL 123
             VGAGEQP+L+PR+L + NTT    ++EL + TS+LAVR+N++RLV+V   + ++Y    L
Sbjct:    67 VGAGEQPALTPRKLSVMNTTANRLIQELTYPTSVLAVRMNRQRLVVVTARRVHVYSMQNL 126

Query:   124 AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC--EIDAHQAP 181
               L  IDT  N +G CA +       LA+P+S T G+V +Y++ +   +   E  AHQ  
Sbjct:   127 TCLRVIDTEENARGCCALTCCHEPNLLALPSSATTGTVRIYDLAQEGGNVLSEAQAHQTS 186

Query:   182 LAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI 241
             +  +  S +G  +ATAS +GT+IRV  +  A +++SFRRGT  + I S++F        +
Sbjct:   187 VTTMAWSGDGGLLATASAKGTVIRVHRLPSAARAHSFRRGTLSAAINSMAFSPPGAPLQL 246

Query:   242 LVATSSSGSLHVFS------PGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNA 295
             L A SS G++HVF       PG  +  R     + +L +++  SV ++++PA  +V    
Sbjct:   247 LAAASSHGTVHVFRLEEPDPPG--VLPRPASAAAGLLTAVMRYSVGDMVEPA-RNVATIR 303

Query:   296 FPAGVKRASVS 306
              P  V  A+V+
Sbjct:   304 LPTSVGAATVA 314

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0000421 "autophagic vacuole membrane" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005829 "cytosol" evidence=IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

UNIPROTKB|Q524W4 ATG18 "Autophagy-related protein 18" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 293 (108.2 bits), Expect = 2.1e-49, Sum P(2) = 2.1e-49
 Identities = 61/142 (42%), Positives = 90/142 (63%)

Query:    12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS 71
             F++FNQD+   A+ T  GF+I+ +      +    G  SI+EML+S+SL+A++       
Sbjct:     8 FITFNQDHGCLAVGTSRGFRIYHTEPFSKIFSSEDGNVSIIEMLFSTSLVALI------- 60

Query:    72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDT 131
             LSPR L + NT  G+ + EL F +++LAVRLN+KRL +VL ++ Y+YD   +++L TI T
Sbjct:    61 LSPRHLIIQNTKRGSVICELTFPSAVLAVRLNRKRLAVVLEDEIYLYDIANMSLLFTIAT 120

Query:   132 VPNLKGLCAFSPSLNACFLAVP 153
              PN   +CA SPS   CFLA P
Sbjct:   121 SPNPSAICALSPSSENCFLAYP 142

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0285375 atg18 "autophagy protein 18" [Dictyostelium discoideum (taxid:44689)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 126/354 (35%), Positives = 205/354 (57%)

Query:    10 VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ 69
             + F++FNQD S  A+ T +G+KIF+S    L Y ++ G   +VEML+S+SL++IVG+G+ 
Sbjct:    11 ILFLNFNQDFSCIAVGTPEGYKIFNSDPYTLYYSQSNGGAGLVEMLFSTSLVSIVGSGDG 70

Query:    70 PSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTI 129
              + S RRL + N      + +LNF+T+IL+V++N+KR+V+++  K +IYD N + +L+T 
Sbjct:    71 -NTSQRRLLINNIKNNIPICDLNFVTAILSVKMNRKRIVVIMETKIHIYDINNMKLLETR 129

Query:   130 DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS 189
             +   N KGLCA SPS N  ++  PAS   G++LV +V+ L +   I AH++ ++A+ LS 
Sbjct:   130 EIASNPKGLCALSPS-NTNYIVYPASQNNGNILVMDVLTLETVNLIQAHKSQISALALSQ 188

Query:   190 NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF----QD----- 240
             +G  +ATAS++GT+IRVF +  A KS SFRRG+ P+ I S++F    ++     D     
Sbjct:   189 DGTLLATASDKGTVIRVFALPYANKSLSFRRGSIPAIIHSMTFSLDGRYLCVSSDTGTIH 248

Query:   241 ---ILVATSSSGSLHVFSP-----GFAINQRRGGRTSSILGSILPESVNEVLDPADHHVL 292
                I  ++S+S S H   P     G  +    GG TS  + S LPE +++V +P+     
Sbjct:   249 IFKIDFSSSNSSSFHQAQPSSSPSGGMMGLNFGGLTSK-MSSYLPEVISQVWEPS-RDFA 306

Query:   293 RNAFPAGV--------KRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL 338
                 P G+           +  V+T +  +++Y F  +        L +EF+LL
Sbjct:   307 HIKIPPGIPSICALMQNNKTAMVLTADSLYMQYNF--DESVGGELKLAKEFSLL 358

GO:0035091 "phosphatidylinositol binding" evidence=ISS

GO:0006914 "autophagy" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=ISS;IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IBA

GO:0034045 "pre-autophagosomal structure membrane" evidence=IEA;IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0000421 "autophagic vacuole membrane" evidence=IBA

GO:0000045 "autophagic vacuole assembly" evidence=IBA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0005773 "vacuole" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IEA

CGD|CAL0005165 orf19.6064 [Candida albicans (taxid:5476)]

 Score = 285 (105.4 bits), Expect = 5.7e-49, Sum P(3) = 5.7e-49
 Identities = 65/155 (41%), Positives = 95/155 (61%)

Query:     2 SNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSST--GRLCYERAVGAFSIVEMLYSSS 59
             +NQ  S  V ++SFNQD S   +  K+G+KIF+     GR    +   +  IVEMLY +S
Sbjct:    36 NNQQYSEIVNYISFNQDASCITIGLKNGYKIFNCQPNFGRSFQFKNDESTGIVEMLYCTS 95

Query:    60 LLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYD 119
             LLA V  GE+   SPR+L + NT T + + +L F ++IL V+L   RL++VL ++ Y+YD
Sbjct:    96 LLATVAQGEEIGSSPRKLKIINTKTKSTICDLIFPSTILQVKLTNTRLIVVLEDQIYLYD 155

Query:   120 ANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA 154
               T+ +L TI+T PNL GL A S   +  +LA P+
Sbjct:   156 ITTMKLLHTIETSPNLSGLSAISYDDSNSYLAYPS 190

GO:0005768 "endosome" evidence=IEA

GO:0000329 "fungal-type vacuole membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0000407 "pre-autophagosomal structure" evidence=IEA

GO:0070772 "PAS complex" evidence=IEA

GO:0032258 "CVT pathway" evidence=IEA

GO:0030242 "peroxisome degradation" evidence=IEA

GO:0045324 "late endosome to vacuole transport" evidence=IEA

GO:0034727 "piecemeal microautophagy of nucleus" evidence=IEA

GO:0006995 "cellular response to nitrogen starvation" evidence=IEA

GO:0006624 "vacuolar protein processing" evidence=IEA

GO:0016236 "macroautophagy" evidence=IEA

GO:0043130 "ubiquitin binding" evidence=IEA

GO:0035091 "phosphatidylinositol binding" evidence=IEA

UNIPROTKB|Q5ZHN3 WIPI2 "WD repeat domain phosphoinositide-interacting protein 2" [Gallus gallus (taxid:9031)]

 Score = 420 (152.9 bits), Expect = 7.5e-42, Sum P(2) = 7.5e-42
 Identities = 102/259 (39%), Positives = 154/259 (59%)

Query:     2 SNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFD-SSTGRL--CYERA-VGAFSIVEMLYS 57
             S  + S  + F +FNQDN+  A+ +K G+K F  SS  +L   YE        IVE L+S
Sbjct:     7 SGDAGSGHLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFS 66

Query:    58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYI 117
             SSL+AIV        +PR+L + +   GT +   ++  +ILAV+LN++RL++ L E  YI
Sbjct:    67 SSLVAIVSLK-----APRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYI 121

Query:   118 YDANTLAILDTI-DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID 176
             ++   + +L TI +T PN  GLCA S + + C+LA P S T G V V++ + L +   I 
Sbjct:   122 HNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIP 181

Query:   177 AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS-TIFSLSFGQS 235
             AH +PLAA+   ++G  +ATASE+GT+IRVF + E  K + FRRG     +I SL+F   
Sbjct:   182 AHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMD 241

Query:   236 MQFQDILVATSSSGSLHVF 254
               F   L A+S++ ++H+F
Sbjct:   242 GMF---LSASSNTETVHIF 257

GO:0000045 "autophagic vacuole assembly" evidence=ISS;IBA

GO:0000421 "autophagic vacuole membrane" evidence=IBA

GO:0005737 "cytoplasm" evidence=IBA

GO:0005829 "cytosol" evidence=ISS;IBA

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISS;IBA

GO:0034045 "pre-autophagosomal structure membrane" evidence=ISS;IBA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

RGD|1359154 Wipi2 "WD repeat domain, phosphoinositide interacting 2" [Rattus norvegicus (taxid:10116)]

 Score = 420 (152.9 bits), Expect = 9.5e-42, Sum P(2) = 9.5e-42
 Identities = 101/259 (38%), Positives = 155/259 (59%)

Query:     2 SNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFD-SSTGRL--CYERA-VGAFSIVEMLYS 57
             S ++ +  + F +FNQDN+  A+ +K G+K F  SS  +L   YE        IVE L+S
Sbjct:     7 SGEAGAGQLLFANFNQDNTSLAVGSKSGYKFFSLSSVDKLEQIYECTDTEDVCIVERLFS 66

Query:    58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYI 117
             SSL+AIV        +PR+L + +   GT +   ++  +ILAV+LN++RL++ L E  YI
Sbjct:    67 SSLVAIVSLK-----APRKLKVCHFKKGTEICNYSYSNTILAVKLNRQRLIVCLEESLYI 121

Query:   118 YDANTLAILDTI-DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID 176
             ++   + +L TI +T PN  GLCA S + + C+LA P S T G V V++ + L +   I 
Sbjct:   122 HNIRDMKVLHTIRETPPNPAGLCALSINNDNCYLAYPGSATIGEVQVFDTINLRAANMIP 181

Query:   177 AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS-TIFSLSFGQS 235
             AH +PLAA+   ++G  +ATASE+GT+IRVF + E  K + FRRG     +I SL+F   
Sbjct:   182 AHDSPLAALAFDASGTKLATASEKGTVIRVFSIPEGQKLFEFRRGVKRCVSICSLAFSMD 241

Query:   236 MQFQDILVATSSSGSLHVF 254
               F   L A+S++ ++H+F
Sbjct:   242 GMF---LSASSNTETVHIF 257

GO:0000045 "autophagic vacuole assembly" evidence=ISO;ISS;IBA

GO:0000421 "autophagic vacuole membrane" evidence=IBA

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO;IBA

GO:0005829 "cytosol" evidence=ISO;ISS;IBA

GO:0008150 "biological_process" evidence=ND

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISO;ISS;IBA

GO:0034045 "pre-autophagosomal structure membrane" evidence=ISO;ISS;IBA

GO:0043234 "protein complex" evidence=IEA;ISO

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISO;ISS;IBA

GO:0000046 "autophagic vacuole fusion" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

GO:0005776 "autophagic vacuole" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6C044	ATG18_YARLI	No assigned EC number	0.3341	0.9415	0.805	yes	no
Q54NA2	ATG18_DICDI	No assigned EC number	0.3444	0.9385	0.8629	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00017118001 SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (363 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	5e-08

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 43/256 (16%), Positives = 103/256 (40%), Gaps = 28/256 (10%)

Query: 9   PVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAG 67
           PV  V+ + D +  A  + D   +++D  TG            +  + +S     +  + 
Sbjct: 53  PVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS 112

Query: 68  EQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRL--NKKRLVIVLREKT-YIYDANTL 123
                  + + +++  TG  L  L      + +V    +   +    ++ T  ++D  T 
Sbjct: 113 RD-----KTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG 167

Query: 124 AILDTI----DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ 179
             + T+      V +     AFSP          +S++ G++ ++++        +  H+
Sbjct: 168 KCVATLTGHTGEVNS----VAFSPDGEKLL----SSSSDGTIKLWDLSTGKCLGTLRGHE 219

Query: 180 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ 239
             + ++  S +G  +A+ SE GT IRV+ +       +    T  +++ SL++    +  
Sbjct: 220 NGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSGHT--NSVTSLAWSPDGKR- 275

Query: 240 DILVATSSSGSLHVFS 255
             L + S+ G++ ++ 
Sbjct: 276 --LASGSADGTIRIWD 289

Length = 289

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
KOG2111	346	consensus Uncharacterized conserved protein, conta	100.0
KOG2110	391	consensus Uncharacterized conserved protein, conta	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.98
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.98
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	99.97
KOG0279	315	consensus G protein beta subunit-like protein [Sig	99.97
KOG0315	311	consensus G-protein beta subunit-like protein (con	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.97
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0286	343	consensus G-protein beta subunit [General function	99.97
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.96
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0263	707	consensus Transcription initiation factor TFIID, s	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0266	456	consensus WD40 repeat-containing protein [General	99.96
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.96
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.96
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.96
KOG0318	603	consensus WD40 repeat stress protein/actin interac	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.95
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.95
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0296	399	consensus Angio-associated migratory cell protein	99.94
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.94
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.94
PLN00181	793	protein SPA1-RELATED; Provisional	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.94
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.94
PTZ00420	568	coronin; Provisional	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.93
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.93
PTZ00421	493	coronin; Provisional	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.92
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0296	399	consensus Angio-associated migratory cell protein	99.92
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.92
KOG0645	312	consensus WD40 repeat protein [General function pr	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.92
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.92
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG0641	350	consensus WD40 repeat protein [General function pr	99.92
PTZ00420	568	coronin; Provisional	99.91
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.91
KOG0641	350	consensus WD40 repeat protein [General function pr	99.91
KOG1273	405	consensus WD40 repeat protein [General function pr	99.91
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.91
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.91
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.91
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.9
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.9
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.89
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.89
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.89
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.88
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.88
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.88
KOG0289	506	consensus mRNA splicing factor [General function p	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.87
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.87
KOG0643	327	consensus Translation initiation factor 3, subunit	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.86
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.86
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.86
KOG2048	691	consensus WD40 repeat protein [General function pr	99.86
KOG1274	933	consensus WD40 repeat protein [General function pr	99.86
KOG0639	705	consensus Transducin-like enhancer of split protei	99.86
KOG1539	910	consensus WD repeat protein [General function pred	99.86
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.86
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.86
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.85
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.85
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.85
KOG0646	476	consensus WD40 repeat protein [General function pr	99.84
KOG2055	514	consensus WD40 repeat protein [General function pr	99.84
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.84
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.84
KOG0267	825	consensus Microtubule severing protein katanin p80	99.83
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.83
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.82
KOG2048	691	consensus WD40 repeat protein [General function pr	99.82
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.82
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.82
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.81
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.81
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.81
KOG0639	705	consensus Transducin-like enhancer of split protei	99.81
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.8
KOG4328	498	consensus WD40 protein [Function unknown]	99.8
KOG1539	910	consensus WD repeat protein [General function pred	99.8
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.79
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.79
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.79
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.79
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.78
KOG0267	825	consensus Microtubule severing protein katanin p80	99.78
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.78
KOG4328	498	consensus WD40 protein [Function unknown]	99.77
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.77
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.77
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.76
KOG1188	376	consensus WD40 repeat protein [General function pr	99.75
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.75
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.73
KOG2096	420	consensus WD40 repeat protein [General function pr	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.72
PRK11028	330	6-phosphogluconolactonase; Provisional	99.71
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.71
COG2319	466	FOG: WD40 repeat [General function prediction only	99.69
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.69
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.69
KOG1963	792	consensus WD40 repeat protein [General function pr	99.69
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.69
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.69
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.69
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.68
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.67
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.66
KOG0649	325	consensus WD40 repeat protein [General function pr	99.65
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.65
KOG1188	376	consensus WD40 repeat protein [General function pr	99.64
KOG1273	405	consensus WD40 repeat protein [General function pr	99.64
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.64
KOG4227	609	consensus WD40 repeat protein [General function pr	99.63
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.63
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.62
KOG1963	792	consensus WD40 repeat protein [General function pr	99.62
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.6
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.6
COG2319	466	FOG: WD40 repeat [General function prediction only	99.6
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.59
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.57
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.56
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.56
KOG2321	703	consensus WD40 repeat protein [General function pr	99.56
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.56
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.55
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.54
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.54
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.54
KOG0649	325	consensus WD40 repeat protein [General function pr	99.53
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.51
PRK01742	429	tolB translocation protein TolB; Provisional	99.51
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.51
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.51
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.49
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.49
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.49
PRK01742	429	tolB translocation protein TolB; Provisional	99.49
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.47
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.46
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.46
KOG2139	445	consensus WD40 repeat protein [General function pr	99.45
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.42
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.42
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.42
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.41
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.41
PRK03629	429	tolB translocation protein TolB; Provisional	99.41
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.4
PRK03629	429	tolB translocation protein TolB; Provisional	99.4
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.39
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.38
KOG4547	541	consensus WD40 repeat-containing protein [General	99.38
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.37
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.36
KOG2139	445	consensus WD40 repeat protein [General function pr	99.34
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.34
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.33
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.33
PRK04922	433	tolB translocation protein TolB; Provisional	99.33
PRK04922	433	tolB translocation protein TolB; Provisional	99.32
KOG1310	758	consensus WD40 repeat protein [General function pr	99.32
KOG1310	758	consensus WD40 repeat protein [General function pr	99.32
KOG1334	559	consensus WD40 repeat protein [General function pr	99.32
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.31
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.31
PRK02889	427	tolB translocation protein TolB; Provisional	99.3
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.3
KOG2315	566	consensus Predicted translation initiation factor	99.3
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.3
KOG4227	609	consensus WD40 repeat protein [General function pr	99.29
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.28
PRK05137	435	tolB translocation protein TolB; Provisional	99.27
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.27
KOG2314	698	consensus Translation initiation factor 3, subunit	99.24
PRK05137	435	tolB translocation protein TolB; Provisional	99.24
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.24
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.23
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.22
PRK02889	427	tolB translocation protein TolB; Provisional	99.22
KOG4547	541	consensus WD40 repeat-containing protein [General	99.19
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.16
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.15
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.14
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.13
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	99.11
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.1
PRK04792	448	tolB translocation protein TolB; Provisional	99.1
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.09
PRK00178	430	tolB translocation protein TolB; Provisional	99.08
PRK00178	430	tolB translocation protein TolB; Provisional	99.06
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.06
KOG2321	703	consensus WD40 repeat protein [General function pr	99.06
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.02
PRK01029	428	tolB translocation protein TolB; Provisional	98.98
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.98
KOG2315	566	consensus Predicted translation initiation factor	98.96
PRK04792	448	tolB translocation protein TolB; Provisional	98.95
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.94
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	98.91
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.91
PRK01029	428	tolB translocation protein TolB; Provisional	98.9
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.89
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.88
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.87
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.85
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.85
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.84
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.84
COG4946	668	Uncharacterized protein related to the periplasmic	98.81
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.8
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.79
KOG1334	559	consensus WD40 repeat protein [General function pr	98.76
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.76
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.74
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.73
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.7
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.68
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.66
KOG2314	698	consensus Translation initiation factor 3, subunit	98.65
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.63
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.63
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.62
COG4946	668	Uncharacterized protein related to the periplasmic	98.58
PRK04043	419	tolB translocation protein TolB; Provisional	98.57
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.52
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.48
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.47
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.47
KOG2695	425	consensus WD40 repeat protein [General function pr	98.46
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.45
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.45
KOG2695	425	consensus WD40 repeat protein [General function pr	98.43
PRK04043	419	tolB translocation protein TolB; Provisional	98.43
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.41
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.41
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.4
KOG2041	1189	consensus WD40 repeat protein [General function pr	98.37
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.35
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.33
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.31
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.3
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.26
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.25
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.24
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.23
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.2
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	98.19
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.19
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.18
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.16
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.15
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.15
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	98.14
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.12
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.12
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.08
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.06
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.05
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.05
PRK02888	635	nitrous-oxide reductase; Validated	98.04
KOG2395	644	consensus Protein involved in vacuole import and d	98.02
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.01
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	98.01
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.96
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.94
PRK02888	635	nitrous-oxide reductase; Validated	97.91
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.91
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.88
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.86
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.81
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.8
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.78
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	97.74
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.72
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.71
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	97.62
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	97.59
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	97.58
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.52
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.48
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.4
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.38
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	97.35
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.26
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	97.25
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.2
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	97.19
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.16
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.13
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.08
KOG3621	726	consensus WD40 repeat-containing protein [General	97.07
COG3391	381	Uncharacterized conserved protein [Function unknow	97.04
COG3391	381	Uncharacterized conserved protein [Function unknow	97.02
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	97.01
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.91
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.9
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.72
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.68
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.65
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.63
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.59
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	96.59
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.57
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	96.48
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.46
KOG2395	644	consensus Protein involved in vacuole import and d	96.45
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.44
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.43
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.38
KOG1008	783	consensus Uncharacterized conserved protein, conta	96.37
KOG3621	726	consensus WD40 repeat-containing protein [General	96.33
PRK13616	591	lipoprotein LpqB; Provisional	96.3
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.22
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.04
PRK10115	686	protease 2; Provisional	96.0
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	95.96
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.96
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	95.87
KOG2444	238	consensus WD40 repeat protein [General function pr	95.75
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	95.6
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	95.57
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.41
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	95.33
COG5167	776	VID27 Protein involved in vacuole import and degra	95.25
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.92
KOG2444	238	consensus WD40 repeat protein [General function pr	94.87
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	94.79
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.75
PRK13616	591	lipoprotein LpqB; Provisional	94.56
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	94.38
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.19
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.13
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	93.82
PHA03098	534	kelch-like protein; Provisional	93.81
PHA02713	557	hypothetical protein; Provisional	93.78
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	93.19
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	93.02
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	92.95
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.82
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	92.71
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	92.6
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.56
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	92.45
PHA02713	557	hypothetical protein; Provisional	92.4
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	92.02
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	91.75
COG5276	370	Uncharacterized conserved protein [Function unknow	91.38
PF14727	418	PHTB1_N: PTHB1 N-terminus	90.84
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	90.51
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	90.49
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.48
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.38
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	90.37
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	90.25
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	89.87
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	89.68
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	89.43
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	89.13
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	88.81
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.77
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.72
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.67
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	88.44
PHA03098	534	kelch-like protein; Provisional	88.36
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	88.32
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	87.96
KOG2109	788	consensus WD40 repeat protein [General function pr	87.87
PRK13684	334	Ycf48-like protein; Provisional	87.64
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	86.96
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	86.95
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	86.81
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	86.23
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	86.15
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	85.47
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	85.4
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	85.24
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	84.41
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	84.03
KOG3611	737	consensus Semaphorins [Signal transduction mechani	83.99
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.19
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	82.58
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	81.8
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	81.39
PF14157	63	YmzC: YmzC-like protein; PDB: 3KVP_E.	81.28
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	80.85
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	80.49

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=1.7e-50  Score=334.58  Aligned_cols=316  Identities=31%  Similarity=0.508  Sum_probs=280.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      +....+++|++|..++++|.+.|+|||++++.+...+  ...+++.+++|++.+|+++++|||.+|.+..++|.|||...
T Consensus         5 ~~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k   84 (346)
T KOG2111|consen    5 EPKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK   84 (346)
T ss_pred             cCceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc
Confidence            4566779999999999999999999999999765433  33456889999999999999999999999999999999999


Q ss_pred             CcEEEEEecCCceEEEEEcCCeEEEEECCeEEEEECC-CCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEE
Q 019349           85 GTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDAN-TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLV  163 (342)
Q Consensus        85 ~~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~i  163 (342)
                      .+++.++.+.++|+++.+.+++++++..++|++|.+. +.+.++.+++..+|.++|++++..+..+||++|. .-|.|+|
T Consensus        85 ~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~-k~GqvQi  163 (346)
T KOG2111|consen   85 ERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGF-KTGQVQI  163 (346)
T ss_pred             CcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCC-ccceEEE
Confidence            9999999999999999999999999999999999998 7899999999999999999999999999999998 6799999


Q ss_pred             EEccCCce--eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349          164 YNVMELHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI  241 (342)
Q Consensus       164 wd~~~~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~  241 (342)
                      -|+...+.  ...+++|.+.|.||+++-+|.+|||||..||+|||||..+|+++.++++|..++.|++|+||||..   +
T Consensus       164 ~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s---~  240 (346)
T KOG2111|consen  164 VDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS---W  240 (346)
T ss_pred             EEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc---E
Confidence            99987665  477899999999999999999999999999999999999999999999999999999999999999   9


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccccccccccccee---eeccCCCccccEEEEEEeCCcEEEEE
Q 019349          242 LVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVL---RNAFPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       242 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                      ||++|+.||+|||.++.....+....+......++|.++...|+.....+.   ...++|+.+.+.++++|.||.++.+.
T Consensus       241 LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~  320 (346)
T KOG2111|consen  241 LAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFK  320 (346)
T ss_pred             EEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence            999999999999999876544432222222334788888888988765543   34567787779999999999999999


Q ss_pred             EecCCCCe
Q 019349          319 FSINNCCE  326 (342)
Q Consensus       319 ~~~~~~~~  326 (342)
                      ++++++++
T Consensus       321 f~~~~~g~  328 (346)
T KOG2111|consen  321 FDPKNGGE  328 (346)
T ss_pred             eccccccc
Confidence            99998776

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=100.00  E-value=8.8e-49  Score=330.21  Aligned_cols=325  Identities=41%  Similarity=0.644  Sum_probs=284.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      +.+..++.+.|++|...|.+|+.+|+++|++++....+....+++.+++|++++..+++++.+     ..+.+++.+.++
T Consensus         3 ~~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~-----qpr~Lkv~~~Kk   77 (391)
T KOG2110|consen    3 GKKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIK-----QPRKLKVVHFKK   77 (391)
T ss_pred             CCCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecC-----CCceEEEEEccc
Confidence            456788999999999999999999999999999877777777899999999999999999984     358999999999


Q ss_pred             CcEEEEEecCCceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCC-CCCceEEEEeeCCCccEEEEeCCCCccEEEE
Q 019349           85 GTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLNACFLAVPASTTKGSVLV  163 (342)
Q Consensus        85 ~~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~i  163 (342)
                      +..+.++.++.+|.++.+++++++++..+.|+|||++++++++++.+- +++.++++++++.++.++|++++...|.|.+
T Consensus        78 ~~~ICe~~fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l  157 (391)
T KOG2110|consen   78 KTTICEIFFPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVL  157 (391)
T ss_pred             CceEEEEecCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEE
Confidence            999999999999999999999999999999999999999999999765 7889999999999999999999888999999


Q ss_pred             EEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEE
Q 019349          164 YNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV  243 (342)
Q Consensus       164 wd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~  243 (342)
                      ||+.+.+++..+.+|++++-|++|+++|.+|||||+.|++||||++.+|+++++|++|.....|++++|+||++   +|+
T Consensus       158 ~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~---~L~  234 (391)
T KOG2110|consen  158 FDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQ---FLA  234 (391)
T ss_pred             EEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCC---eEE
Confidence            99999999999999999999999999999999999999999999999999999999999888899999999999   999


Q ss_pred             EEeCCCcEEEEecCCCCCCCCC--CCcc-------ccccccccccccccccccccceee--------eccCCC--ccccE
Q 019349          244 ATSSSGSLHVFSPGFAINQRRG--GRTS-------SILGSILPESVNEVLDPADHHVLR--------NAFPAG--VKRAS  304 (342)
Q Consensus       244 ~~s~dg~i~vwd~~~~~~~~~~--~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~--~~~~~  304 (342)
                      +.|+.+|||||.++.....+..  ....       ....+++|.++..+|+.....+-+        ..+.+.  .+.++
T Consensus       235 ~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~  314 (391)
T KOG2110|consen  235 ASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPR  314 (391)
T ss_pred             EecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCE
Confidence            9999999999999876532211  1111       122347788888888876533211        111112  34689


Q ss_pred             EEEEEeCCcEEEEEEecCCCCeeeeEEEeeeeccc
Q 019349          305 VSVITYNGYFVEYIFSINNCCESTWTLDREFNLLT  339 (342)
Q Consensus       305 l~~~~~dg~v~~~~~~~~~~~~~~~~~~~~~~~~~  339 (342)
                      +.+++.||.++.|.++++++++  |.+.++|.+..
T Consensus       315 v~vas~dG~~y~y~l~~~~gGe--c~lik~h~~~~  347 (391)
T KOG2110|consen  315 VLVASYDGHLYSYRLPPKEGGE--CALIKRHFLDG  347 (391)
T ss_pred             EEEEEcCCeEEEEEcCCCCCce--eEEEEeeccCC
Confidence            9999999999999999998876  99999998754

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-37  Score=262.62  Aligned_cols=278  Identities=17%  Similarity=0.207  Sum_probs=220.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE---EEEeeCCEEEEEEcC-----CCCeEEEEcCCCCCCCCCC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC---YERAVGAFSIVEMLY-----SSSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~---~~~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~d~   75 (342)
                      .|..-|.|++|+|||+.||+|+.+| +++||..+++.+   +..|...|..++|.+     .+..++..+       .|+
T Consensus       155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~s-------kDg  227 (480)
T KOG0271|consen  155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSS-------KDG  227 (480)
T ss_pred             CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceeccc-------CCC
Confidence            5677899999999999999999888 699999999765   334556666666543     234454443       599


Q ss_pred             eEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEe---------e
Q 019349           76 RLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFS---------P  143 (342)
Q Consensus        76 ~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~---------~  143 (342)
                      +++|||+..++++..+. +..+|+++.+..+.++..+  |++|++|+..++++.+.+..|.+-....+++         +
T Consensus       228 ~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf  307 (480)
T KOG0271|consen  228 SVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAF  307 (480)
T ss_pred             CEEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhcccc
Confidence            99999999999998876 4569999999988776655  8899999999999999998887755544444         1


Q ss_pred             CCC-------------------------ccEEEEeCCCCccEEEEEEccC-CceeEEEecccCCeeEEEECCCCCEEEEE
Q 019349          144 SLN-------------------------ACFLAVPASTTKGSVLVYNVME-LHSHCEIDAHQAPLAAIVLSSNGMYIATA  197 (342)
Q Consensus       144 ~~~-------------------------~~~l~~~~~~~~g~i~iwd~~~-~~~~~~~~~h~~~v~~i~~s~dg~~lat~  197 (342)
                      ++.                         +..|++++  .|+++.+|+-.. .+++..+.+|..-|+.+.||||++++|+|
T Consensus       308 ~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs--Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASa  385 (480)
T KOG0271|consen  308 DHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS--DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASA  385 (480)
T ss_pred             ccccccCCChHHHHHHHHHHHHHhhccCcceeEEec--CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEe
Confidence            111                         12477666  699999999754 45788889999999999999999999999


Q ss_pred             eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccc
Q 019349          198 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILP  277 (342)
Q Consensus       198 s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  277 (342)
                      |-|.. ||+||-++|+.+..|+.+  -+.|+.++|+.|.+   +|+++|.|.|++|||+++.+...-       +-++-.
T Consensus       386 SFDkS-VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsR---LlVS~SkDsTLKvw~V~tkKl~~D-------LpGh~D  452 (480)
T KOG0271|consen  386 SFDKS-VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSR---LLVSGSKDSTLKVWDVRTKKLKQD-------LPGHAD  452 (480)
T ss_pred             ecccc-eeeeeCCCcchhhhhhhc--cceeEEEEeccCcc---EEEEcCCCceEEEEEeeeeeeccc-------CCCCCc
Confidence            99987 599999999999999754  56799999999999   999999999999999998764221       222233


Q ss_pred             ccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349          278 ESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                      +.+..-|+|++              .++++++.|.-+++|.
T Consensus       453 EVf~vDwspDG--------------~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  453 EVFAVDWSPDG--------------QRVASGGKDKVLRLWR  479 (480)
T ss_pred             eEEEEEecCCC--------------ceeecCCCceEEEeec
Confidence            44455677765              7899999999999884

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.9e-37  Score=265.41  Aligned_cols=277  Identities=14%  Similarity=0.159  Sum_probs=226.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEE--EEEeeCCEEEEEEcCCCC--eEEEEcCCCCCCCCCCeEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLC--YERAVGAFSIVEMLYSSS--LLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~d~~i~   78 (342)
                      -..+.||..+.|+.|++.||+|+-+|. +||+..+...+  +..|...+..+.+.+..+  .++.++       .|++++
T Consensus       172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s-------~Dgtvk  244 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATAS-------ADGTVK  244 (459)
T ss_pred             ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeec-------cCCcee
Confidence            356789999999999999999999996 99998887554  444556677777777632  444444       599999


Q ss_pred             EEECCCCcEEEEEecC-CceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           79 LFNTTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        79 iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      +|++.+..++..++.+ ..|..++|+|++.++++   |.+-++||+++++.+...+.|  ..++..+++.+||.+++++|
T Consensus       245 lw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGH--s~~v~~iaf~~DGSL~~tGG  322 (459)
T KOG0272|consen  245 LWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGH--SKGVFSIAFQPDGSLAATGG  322 (459)
T ss_pred             eeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhccc--ccccceeEecCCCceeeccC
Confidence            9999998899888754 48999999999877766   889999999998766555544  45788888899999999888


Q ss_pred             CCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349          155 STTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  234 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~  234 (342)
                        .|..-+|||++++.++..+.+|..+|.+|+|+|+|..|||||.|++ +||||++....++.+..+  ...|..+.|+|
T Consensus       323 --lD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt-~kVWDLR~r~~ly~ipAH--~nlVS~Vk~~p  397 (459)
T KOG0272|consen  323 --LDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNT-CKVWDLRMRSELYTIPAH--SNLVSQVKYSP  397 (459)
T ss_pred             --ccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCc-EEEeeecccccceecccc--cchhhheEecc
Confidence              6899999999999999999999999999999999999999999998 599999999888888654  45699999999


Q ss_pred             -CCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCc
Q 019349          235 -SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY  313 (342)
Q Consensus       235 -d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  313 (342)
                       .|.   +|+++|.|++++||.-++..+.++       +.++-.+.+..-.              .+++..|++++.|.+
T Consensus       398 ~~g~---fL~TasyD~t~kiWs~~~~~~~ks-------LaGHe~kV~s~Di--------------s~d~~~i~t~s~DRT  453 (459)
T KOG0272|consen  398 QEGY---FLVTASYDNTVKIWSTRTWSPLKS-------LAGHEGKVISLDI--------------SPDSQAIATSSFDRT  453 (459)
T ss_pred             cCCe---EEEEcccCcceeeecCCCcccchh-------hcCCccceEEEEe--------------ccCCceEEEeccCce
Confidence             556   999999999999999877766553       3333333222222              334478999999999


Q ss_pred             EEEEE
Q 019349          314 FVEYI  318 (342)
Q Consensus       314 v~~~~  318 (342)
                      ++.|.
T Consensus       454 ~KLW~  458 (459)
T KOG0272|consen  454 IKLWR  458 (459)
T ss_pred             eeecc
Confidence            99994

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.4e-36  Score=257.23  Aligned_cols=281  Identities=12%  Similarity=0.107  Sum_probs=221.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      +.|.++|.|++|+|+|..||+|+.|. +|+||+++-...+.  .|.+-+.++++.+++..++..+       .|++|++|
T Consensus       112 ~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~-------~dg~I~lw  184 (480)
T KOG0271|consen  112 AGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGS-------KDGSIRLW  184 (480)
T ss_pred             CCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccc-------cCCeEEEe
Confidence            57899999999999999999998886 69999988766554  4556778888888888877654       59999999


Q ss_pred             ECCCCcEEEE-Ee-cCCceEEEEEcCC------e-EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349           81 NTTTGTALRE-LN-FLTSILAVRLNKK------R-LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        81 d~~~~~~~~~-~~-~~~~v~~i~~~~~------~-~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                      |.++|+++.. +. +...|.+++|.|-      + ++.++ ||.++|||+..++++..+..|.+  .+.|+.+.+++ ++
T Consensus       185 dpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~--~VTCvrwGG~g-li  261 (480)
T KOG0271|consen  185 DPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTA--SVTCVRWGGEG-LI  261 (480)
T ss_pred             cCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCcc--ceEEEEEcCCc-eE
Confidence            9999998864 33 4558999999663      2 22233 99999999999999999887766  57788887654 45


Q ss_pred             EEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEEC-----------CCC-------------------------CEE
Q 019349          151 AVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLS-----------SNG-------------------------MYI  194 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s-----------~dg-------------------------~~l  194 (342)
                      ++ |+ .|++|++|+...|.+.+.+++|...|+.|++|           |.|                         ..|
T Consensus       262 yS-gS-~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erl  339 (480)
T KOG0271|consen  262 YS-GS-QDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERL  339 (480)
T ss_pred             Ee-cC-CCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCccee
Confidence            54 44 79999999999999999999999999999987           223                         359


Q ss_pred             EEEeCCCcEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccc
Q 019349          195 ATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG  273 (342)
Q Consensus       195 at~s~dg~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  273 (342)
                      ++||+|.+++ +|+-...+ .+.++.  .|...|+.+.||||++   ++|++|-|.+|++||-++++-..+       +.
T Consensus       340 VSgsDd~tlf-lW~p~~~kkpi~rmt--gHq~lVn~V~fSPd~r---~IASaSFDkSVkLW~g~tGk~las-------fR  406 (480)
T KOG0271|consen  340 VSGSDDFTLF-LWNPFKSKKPITRMT--GHQALVNHVSFSPDGR---YIASASFDKSVKLWDGRTGKFLAS-------FR  406 (480)
T ss_pred             EEecCCceEE-Eecccccccchhhhh--chhhheeeEEECCCcc---EEEEeecccceeeeeCCCcchhhh-------hh
Confidence            9999999976 99976543 555543  3456799999999999   999999999999999887764332       22


Q ss_pred             ccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349          274 SILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                      ++........|+.+.              ..|+++|.|-++++|++..++
T Consensus       407 GHv~~VYqvawsaDs--------------RLlVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  407 GHVAAVYQVAWSADS--------------RLLVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             hccceeEEEEeccCc--------------cEEEEcCCCceEEEEEeeeee
Confidence            333444455676654              679999999999999987654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.2e-32  Score=226.12  Aligned_cols=280  Identities=13%  Similarity=0.148  Sum_probs=218.3

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      +..|...|+++.|++|.++|++++.||. .|||.-+..........  -+-..++.+++++++..|       -|+..-|
T Consensus        51 LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGG-------LdN~Csi  123 (343)
T KOG0286|consen   51 LKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGG-------LDNKCSI  123 (343)
T ss_pred             ecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecC-------cCceeEE
Confidence            4568889999999999999999999995 99998776554443333  344455666667766544       4899999


Q ss_pred             EECCCC--c----EEEEEe-cCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC-CccE
Q 019349           80 FNTTTG--T----ALRELN-FLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL-NACF  149 (342)
Q Consensus        80 wd~~~~--~----~~~~~~-~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  149 (342)
                      |++.+.  +    ...++. +.+.+.++.|-++..++.+  |.+..+||+++++.+..+..|..  .+.+++..| +.+.
T Consensus       124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~g--DV~slsl~p~~~nt  201 (343)
T KOG0286|consen  124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTG--DVMSLSLSPSDGNT  201 (343)
T ss_pred             EecccccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcc--cEEEEecCCCCCCe
Confidence            999854  2    122232 4557888888777666654  77999999999999999976655  466666666 7778


Q ss_pred             EEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349          150 LAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  229 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~  229 (342)
                      +++++  -|+..++||++.+.++++|.+|++.|++|+|.|+|.-++|||+|++ .|+||++..+.+..+........|++
T Consensus       202 FvSg~--cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~t-cRlyDlRaD~~~a~ys~~~~~~gitS  278 (343)
T KOG0286|consen  202 FVSGG--CDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDAT-CRLYDLRADQELAVYSHDSIICGITS  278 (343)
T ss_pred             EEecc--cccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCce-eEEEeecCCcEEeeeccCcccCCcee
Confidence            88888  4899999999999999999999999999999999999999999998 59999999999888865444566999


Q ss_pred             EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349          230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  309 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (342)
                      ++||..|+   +|.+|..|.++.+||.-..+...       .+.+              |.-.+.-+...|++-.+.++|
T Consensus       279 v~FS~SGR---lLfagy~d~~c~vWDtlk~e~vg-------~L~G--------------HeNRvScl~~s~DG~av~TgS  334 (343)
T KOG0286|consen  279 VAFSKSGR---LLFAGYDDFTCNVWDTLKGERVG-------VLAG--------------HENRVSCLGVSPDGMAVATGS  334 (343)
T ss_pred             EEEccccc---EEEeeecCCceeEeeccccceEE-------Eeec--------------cCCeeEEEEECCCCcEEEecc
Confidence            99999999   99999999999999965544311       1222              222223334456667899999


Q ss_pred             eCCcEEEEE
Q 019349          310 YNGYFVEYI  318 (342)
Q Consensus       310 ~dg~v~~~~  318 (342)
                      -|-++++|.
T Consensus       335 WDs~lriW~  343 (343)
T KOG0286|consen  335 WDSTLRIWA  343 (343)
T ss_pred             hhHheeecC
Confidence            999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-32  Score=222.62  Aligned_cols=286  Identities=13%  Similarity=0.092  Sum_probs=211.0

Q ss_pred             CCCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEeCCCC-----cE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCC
Q 019349            3 NQSSSYPVFFVSFNQDNS-GFALSTKDG-FKIFDSSTG-----RL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~-~la~g~~~g-~~v~d~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (342)
                      ...++..|..++..+.+. .|+.++.|. +.+|++...     ..  .+..|.+-+.-+.+.+++++.+.++       .
T Consensus        11 l~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~s-------w   83 (315)
T KOG0279|consen   11 LEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSAS-------W   83 (315)
T ss_pred             ecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEecc-------c
Confidence            357889999999999864 466666665 689987544     22  2444555666677777777776665       4


Q ss_pred             CCeEEEEECCCCcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC--c
Q 019349           74 PRRLCLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN--A  147 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~  147 (342)
                      |+++++||+.+++....+.. ...|.+++++++...+++   |++|++||+-.. +..++....+..=+.++.++|+  +
T Consensus        84 D~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~  162 (315)
T KOG0279|consen   84 DGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESN  162 (315)
T ss_pred             cceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCC
Confidence            99999999999988877754 458999999998665555   899999998654 3344433332333445555554  7


Q ss_pred             cEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE
Q 019349          148 CFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  227 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v  227 (342)
                      ..|+.++  .|++|++||+++.+...++.+|.+-++.+++||||.++++|+.||.+ .+||++.++.++.+.   +...|
T Consensus       163 p~Ivs~s--~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~-~LwdL~~~k~lysl~---a~~~v  236 (315)
T KOG0279|consen  163 PIIVSAS--WDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEA-MLWDLNEGKNLYSLE---AFDIV  236 (315)
T ss_pred             cEEEEcc--CCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceE-EEEEccCCceeEecc---CCCeE
Confidence            7888887  79999999999999999999999999999999999999999999986 699999999998884   34579


Q ss_pred             EEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccc-c-ccccccccccccccccccceeeeccCCCccccEE
Q 019349          228 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSS-I-LGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  305 (342)
Q Consensus       228 ~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      .+++|+|+..   +|+.+. +..|+|||++............. . ...-.|.-....|+.+              +..|
T Consensus       237 ~sl~fspnry---wL~~at-~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~d--------------G~tL  298 (315)
T KOG0279|consen  237 NSLCFSPNRY---WLCAAT-ATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSAD--------------GQTL  298 (315)
T ss_pred             eeEEecCCce---eEeecc-CCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCC--------------CcEE
Confidence            9999999986   666555 44699999988765432111000 0 0001122223445544              4899


Q ss_pred             EEEEeCCcEEEEEEe
Q 019349          306 SVITYNGYFVEYIFS  320 (342)
Q Consensus       306 ~~~~~dg~v~~~~~~  320 (342)
                      +++-.|+.|++|++.
T Consensus       299 f~g~td~~irv~qv~  313 (315)
T KOG0279|consen  299 FAGYTDNVIRVWQVA  313 (315)
T ss_pred             EeeecCCcEEEEEee
Confidence            999999999999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.3e-32  Score=238.78  Aligned_cols=276  Identities=16%  Similarity=0.207  Sum_probs=229.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcE-EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      .....|++++||.+|+.||+|+.+|. |+|+...... .+..|.+++..+.|...+++++..+.       |+++.+||.
T Consensus       233 ~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~v-------D~ttilwd~  305 (524)
T KOG0273|consen  233 PSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGV-------DGTTILWDA  305 (524)
T ss_pred             CccCCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccC-------CccEEEEec
Confidence            45678999999999999999999996 9999765432 35557788888888888888876654       999999999


Q ss_pred             CCCcEEEEEecCCce-EEEEEcCCe-EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349           83 TTGTALRELNFLTSI-LAVRLNKKR-LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        83 ~~~~~~~~~~~~~~v-~~i~~~~~~-~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      .+|+....+.+++.. .++.|-.+. ++..+ |+.|+++.+....++.++..|.+  .+.++-++|.+.+|++++  .|+
T Consensus       306 ~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g--~V~alk~n~tg~LLaS~S--dD~  381 (524)
T KOG0273|consen  306 HTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG--EVNALKWNPTGSLLASCS--DDG  381 (524)
T ss_pred             cCceEEEeeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccC--ceEEEEECCCCceEEEec--CCC
Confidence            999999999888755 888885554 44444 88999999998888989887655  578889999999999998  699


Q ss_pred             EEEEEEccCCceeEEEecccCCeeEEEECCCC---------CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEE
Q 019349          160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG---------MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL  230 (342)
Q Consensus       160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg---------~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l  230 (342)
                      +++||.+........+.+|...|..+.|+|+|         ..|++++.|++ +++||+..|.+++.|.++  ..+|+++
T Consensus       382 TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dst-V~lwdv~~gv~i~~f~kH--~~pVysv  458 (524)
T KOG0273|consen  382 TLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDST-VKLWDVESGVPIHTLMKH--QEPVYSV  458 (524)
T ss_pred             eeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCe-EEEEEccCCceeEeeccC--CCceEEE
Confidence            99999999988999999999999999999875         57999999997 599999999999999755  5679999


Q ss_pred             EEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe
Q 019349          231 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY  310 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (342)
                      +|||+++   +||+|+.||.|++|+++..+..+......        ..+...|+.++              ++|.++-+
T Consensus       459 afS~~g~---ylAsGs~dg~V~iws~~~~~l~~s~~~~~--------~Ifel~Wn~~G--------------~kl~~~~s  513 (524)
T KOG0273|consen  459 AFSPNGR---YLASGSLDGCVHIWSTKTGKLVKSYQGTG--------GIFELCWNAAG--------------DKLGACAS  513 (524)
T ss_pred             EecCCCc---EEEecCCCCeeEeccccchheeEeecCCC--------eEEEEEEcCCC--------------CEEEEEec
Confidence            9999999   99999999999999999887644311111        12445787766              78999999


Q ss_pred             CCcEEEEEE
Q 019349          311 NGYFVEYIF  319 (342)
Q Consensus       311 dg~v~~~~~  319 (342)
                      ||.+.+.++
T Consensus       514 d~~vcvldl  522 (524)
T KOG0273|consen  514 DGSVCVLDL  522 (524)
T ss_pred             CCCceEEEe
Confidence            999988776

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.7e-32  Score=219.41  Aligned_cols=243  Identities=13%  Similarity=0.197  Sum_probs=200.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCc----EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR----LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      -+++.|+.+..+||++.||+|+..-+|+||++++.    ..++.+.+.+..+.+..++..+...+       .|++++||
T Consensus        38 h~dsqVNrLeiTpdk~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgs-------eDgt~kIW  110 (311)
T KOG0315|consen   38 HPDSQVNRLEITPDKKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGS-------EDGTVKIW  110 (311)
T ss_pred             cCccceeeEEEcCCcchhhhccCCeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecC-------CCceEEEE
Confidence            45778999999999999999999999999998874    34666667888888888877776554       49999999


Q ss_pred             ECCCCcEEEEEecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           81 NTTTGTALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      |++...+.+.+++.++|.++.++|+.  ++++. ++.|++||+....+.+.+. ++....+..++..+++.+++.+.  .
T Consensus       111 dlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~li-Pe~~~~i~sl~v~~dgsml~a~n--n  187 (311)
T KOG0315|consen  111 DLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELI-PEDDTSIQSLTVMPDGSMLAAAN--N  187 (311)
T ss_pred             eccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccC-CCCCcceeeEEEcCCCcEEEEec--C
Confidence            99998888899999999999999875  33333 6799999998876665553 33345677888889999999887  5


Q ss_pred             ccEEEEEEccCC------ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC-eeEEEeccCcCceeEEEE
Q 019349          158 KGSVLVYNVMEL------HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-TKSYSFRRGTYPSTIFSL  230 (342)
Q Consensus       158 ~g~i~iwd~~~~------~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~-~~~~~~~~~~~~~~v~~l  230 (342)
                      .|...+|++.+.      +++..+++|.+-+..+.+|||+++|||+|.|.+ ++||++.+. +....+.  .+..-+...
T Consensus       188 kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdkt-v~iwn~~~~~kle~~l~--gh~rWvWdc  264 (311)
T KOG0315|consen  188 KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKT-VKIWNTDDFFKLELVLT--GHQRWVWDC  264 (311)
T ss_pred             CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCce-EEEEecCCceeeEEEee--cCCceEEee
Confidence            899999998654      356778899999999999999999999999988 589999877 2222332  334569999


Q ss_pred             EEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          231 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      +||.|++   ||++|+.|+++++|+++.+++.+
T Consensus       265 ~FS~dg~---YlvTassd~~~rlW~~~~~k~v~  294 (311)
T KOG0315|consen  265 AFSADGE---YLVTASSDHTARLWDLSAGKEVR  294 (311)
T ss_pred             eeccCcc---EEEecCCCCceeecccccCceee
Confidence            9999999   99999999999999999988755

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=7.4e-32  Score=245.74  Aligned_cols=298  Identities=12%  Similarity=0.163  Sum_probs=221.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC--cEEEEeCCCCcEEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKD--GFKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~--g~~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      ...+|..++||..|..||.|+.+  -+-||++++-..++..+.+  .+..++..++++.+++.+       .|++|+|||
T Consensus       306 s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~-------eDgKVKvWn  378 (893)
T KOG0291|consen  306 SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGA-------EDGKVKVWN  378 (893)
T ss_pred             ccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEecc-------CCCcEEEEe
Confidence            45789999999999999999887  3699999887777666544  444455555555655443       599999999


Q ss_pred             CCCCcEEEEEec-CCceEEEEEcCCeEEEE--E-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           82 TTTGTALRELNF-LTSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        82 ~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      ..+|-|+.++.. .+.|+.+.|+..+.++.  + ||+|+.||+...+..+++.. +.+....+++.+|.+..++.++. .
T Consensus       379 ~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~-P~p~QfscvavD~sGelV~AG~~-d  456 (893)
T KOG0291|consen  379 TQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTS-PEPIQFSCVAVDPSGELVCAGAQ-D  456 (893)
T ss_pred             ccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecC-CCceeeeEEEEcCCCCEEEeecc-c
Confidence            999999998864 56899999977654443  3 99999999999999999865 56677778888887777766664 4


Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecCC
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSM  236 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d~  236 (342)
                      .=.|.+|++++|+.+-.+.+|++||.+++|+|+|+.||++|.|.+ ||+||+-... ...+++   ....+..++|+|||
T Consensus       457 ~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkT-VRiW~if~s~~~vEtl~---i~sdvl~vsfrPdG  532 (893)
T KOG0291|consen  457 SFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKT-VRIWDIFSSSGTVETLE---IRSDVLAVSFRPDG  532 (893)
T ss_pred             eEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccce-EEEEEeeccCceeeeEe---eccceeEEEEcCCC
Confidence            567999999999999999999999999999999999999999988 5999996542 333442   23458999999999


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccc-cccccccccccccccceeeeccCCCccccEEEEEEeCCcEE
Q 019349          237 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS-ILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV  315 (342)
Q Consensus       237 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~  315 (342)
                      +   .||+++.||.|.+||++......+.+...-..++ ...+.+..--+..  ....+.+...++++.|++|+....|.
T Consensus       533 ~---elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~--~K~Ftti~ySaDG~~IlAgG~sn~iC  607 (893)
T KOG0291|consen  533 K---ELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAK--GKTFTTICYSADGKCILAGGESNSIC  607 (893)
T ss_pred             C---eEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhccc--CCceEEEEEcCCCCEEEecCCcccEE
Confidence            9   9999999999999999876654221111010111 0011110000000  01123445567789999999999999


Q ss_pred             EEEEec
Q 019349          316 EYIFSI  321 (342)
Q Consensus       316 ~~~~~~  321 (342)
                      +|++..
T Consensus       608 iY~v~~  613 (893)
T KOG0291|consen  608 IYDVPE  613 (893)
T ss_pred             EEECch
Confidence            998865

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=9.9e-33  Score=253.06  Aligned_cols=239  Identities=16%  Similarity=0.226  Sum_probs=203.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcE---------------------------------EEEEeeCCEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL---------------------------------CYERAVGAFSI   51 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~---------------------------------~~~~~~~~~~~   51 (342)
                      ....++|..|++|++.||+|..+. +++|.+.+.++                                 ....|.+++.-
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg  456 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG  456 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence            456799999999999999998887 69998774210                                 12234567777


Q ss_pred             EEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC-CceEEEEEcCCeEEEEE---CCeEEEEECCCCceee
Q 019349           52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTLAILD  127 (342)
Q Consensus        52 ~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~  127 (342)
                      +.+.++.++++.++.       |.++|+|.+.+..++-.+..+ .+|.++.|+|.+.+.++   |++.++|.....++++
T Consensus       457 ~sFsPd~rfLlScSE-------D~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlR  529 (707)
T KOG0263|consen  457 CSFSPDRRFLLSCSE-------DSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLR  529 (707)
T ss_pred             eeecccccceeeccC-------CcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchh
Confidence            888888888877764       899999999999988877654 49999999998777766   8899999999888888


Q ss_pred             EEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349          128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF  207 (342)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw  207 (342)
                      .+..|-+...  |+.++|+..++|+++  .|.+|++||+.+|..++.|.+|.++|.+++|||+|++||+|++||. |++|
T Consensus       530 ifaghlsDV~--cv~FHPNs~Y~aTGS--sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~-I~iW  604 (707)
T KOG0263|consen  530 IFAGHLSDVD--CVSFHPNSNYVATGS--SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGL-IKIW  604 (707)
T ss_pred             hhcccccccc--eEEECCcccccccCC--CCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCc-EEEE
Confidence            8877766544  556677788999987  6899999999999999999999999999999999999999999997 5899


Q ss_pred             EcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          208 LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       208 d~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      |+.+|..+.++..+  .+.|++|.||.||.   .||+|+.|++|++||+.....
T Consensus       605 Dl~~~~~v~~l~~H--t~ti~SlsFS~dg~---vLasgg~DnsV~lWD~~~~~~  653 (707)
T KOG0263|consen  605 DLANGSLVKQLKGH--TGTIYSLSFSRDGN---VLASGGADNSVRLWDLTKVIE  653 (707)
T ss_pred             EcCCCcchhhhhcc--cCceeEEEEecCCC---EEEecCCCCeEEEEEchhhcc
Confidence            99999999998755  66799999999999   999999999999999977654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=3.3e-33  Score=239.46  Aligned_cols=235  Identities=16%  Similarity=0.176  Sum_probs=205.5

Q ss_pred             CCCCCCeEEEEEcCC--CCEEEEEcCCc-EEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            4 QSSSYPVFFVSFNQD--NSGFALSTKDG-FKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d--~~~la~g~~~g-~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      .+|.+.|.++.|+|.  +..||+++.|| +++|++++...+  ++.|...+..+.+.+++.++++.+       .|.+-+
T Consensus       214 ~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~Tas-------fD~tWR  286 (459)
T KOG0272|consen  214 RGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTAS-------FDSTWR  286 (459)
T ss_pred             eccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCCceeeecc-------cccchh
Confidence            468889999999997  56799999888 599999886655  344556777888888888887776       499999


Q ss_pred             EEECCCCcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           79 LFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        79 iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      +||+.++..+...+. ...|.+++|++++-++++   |..-+|||+++++++-.+..|.  ..+..++++|+|..||+++
T Consensus       287 lWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~--k~I~~V~fsPNGy~lATgs  364 (459)
T KOG0272|consen  287 LWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHI--KEILSVAFSPNGYHLATGS  364 (459)
T ss_pred             hcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccc--cceeeEeECCCceEEeecC
Confidence            999999987765554 458999999999988877   6789999999999998887754  4688899999999999998


Q ss_pred             CCCccEEEEEEccCCceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe
Q 019349          155 STTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs  233 (342)
                        .|++++|||++..+++.++++|.+-|+.|.|+| .|.+|+|+|.|++ +++|...+.++++.+..  |..+|.++.++
T Consensus       365 --~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t-~kiWs~~~~~~~ksLaG--He~kV~s~Dis  439 (459)
T KOG0272|consen  365 --SDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNT-VKIWSTRTWSPLKSLAG--HEGKVISLDIS  439 (459)
T ss_pred             --CCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcc-eeeecCCCcccchhhcC--CccceEEEEec
Confidence              689999999999999999999999999999998 8899999999998 59999999999999864  46789999999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEe
Q 019349          234 QSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      +|+.   ++++++.|.++++|.
T Consensus       440 ~d~~---~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  440 PDSQ---AIATSSFDRTIKLWR  458 (459)
T ss_pred             cCCc---eEEEeccCceeeecc
Confidence            9999   999999999999995

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=9.3e-33  Score=235.81  Aligned_cols=278  Identities=12%  Similarity=0.149  Sum_probs=220.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC--cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      ..-+|..+.|.|+|+.|++|++.| +.+|+..+.  +.+...|...+..+.+.+++..++...       .++.|++|+.
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD-------~gG~iKyWqp  167 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGD-------KGGMIKYWQP  167 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcC-------CCceEEeccc
Confidence            456899999999999999999888 799998654  444555667777778877776654433       4899999997


Q ss_pred             CCCcEEEEEecC-CceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349           83 TTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (342)
Q Consensus        83 ~~~~~~~~~~~~-~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  158 (342)
                      .-........++ ..|++++|+++.  ++.++ |++|+|||+...+....+..|.  -.+.++.++|....+|++|  .|
T Consensus       168 nmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHg--wdVksvdWHP~kgLiasgs--kD  243 (464)
T KOG0284|consen  168 NMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHG--WDVKSVDWHPTKGLIASGS--KD  243 (464)
T ss_pred             chhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCC--CCcceeccCCccceeEEcc--CC
Confidence            654433333344 689999998753  44455 7899999999887777775443  3567888999888999888  57


Q ss_pred             cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCc
Q 019349          159 GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  238 (342)
Q Consensus       159 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (342)
                      ..|++||.+++.++.++.+|+..|..+.|+|++++|+|+|.|.. ++++|+++.+.+..++.+  ...|++++|+|-.. 
T Consensus       244 nlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~-~kv~DiR~mkEl~~~r~H--kkdv~~~~WhP~~~-  319 (464)
T KOG0284|consen  244 NLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQS-CKVFDIRTMKELFTYRGH--KKDVTSLTWHPLNE-  319 (464)
T ss_pred             ceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCce-EEEEehhHhHHHHHhhcc--hhhheeeccccccc-
Confidence            89999999999999999999999999999999999999999986 699999988888888643  55699999999887 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349          239 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       239 ~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                       ++|.+|+.||.|..|.+...++          +....+.+..++|+.+-|+          -+.-|++++-|.+++.|.
T Consensus       320 -~lftsgg~Dgsvvh~~v~~~~p----------~~~i~~AHd~~iwsl~~hP----------lGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  320 -SLFTSGGSDGSVVHWVVGLEEP----------LGEIPPAHDGEIWSLAYHP----------LGHILATGSNDRTVRFWT  378 (464)
T ss_pred             -cceeeccCCCceEEEecccccc----------ccCCCcccccceeeeeccc----------cceeEeecCCCcceeeec
Confidence             5999999999999999985554          2333444556778776643          335688888899999996


Q ss_pred             E
Q 019349          319 F  319 (342)
Q Consensus       319 ~  319 (342)
                      -
T Consensus       379 r  379 (464)
T KOG0284|consen  379 R  379 (464)
T ss_pred             c
Confidence            4

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.2e-30  Score=215.13  Aligned_cols=279  Identities=14%  Similarity=0.139  Sum_probs=214.1

Q ss_pred             CCCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc---EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            1 MSNQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR---LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         1 ~~~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      |..+.+++.|+.+.|+|+|.+||+|+.|- +.+|+.....   .....|.+.+.-+.+..+++.++.+|.       |++
T Consensus        41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gt-------Dk~  113 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGT-------DKT  113 (338)
T ss_pred             hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecC-------Cce
Confidence            45678999999999999999999987665 7999854331   223345566666677778888877775       999


Q ss_pred             EEEEECCCCcEEEEEecCCc-eEEEEEcCCe-EEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           77 LCLFNTTTGTALRELNFLTS-ILAVRLNKKR-LVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        77 i~iwd~~~~~~~~~~~~~~~-v~~i~~~~~~-~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      |+.||+++|+++..++.+.. |..+...+-+ .++++   |+++++||++....++++   .+...+.++.+..++..+.
T Consensus       114 v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~---~~kyqltAv~f~d~s~qv~  190 (338)
T KOG0265|consen  114 VRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTF---ENKYQLTAVGFKDTSDQVI  190 (338)
T ss_pred             EEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhcc---ccceeEEEEEeccccccee
Confidence            99999999999998876654 4555544333 33333   789999999988766655   3456688889888888888


Q ss_pred             EeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC----eeEEEeccCcCc--e
Q 019349          152 VPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA----TKSYSFRRGTYP--S  225 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~----~~~~~~~~~~~~--~  225 (342)
                      +++  -|+.|++||++..+...++.+|.++|+.|..+|+|.++.+-+-|.+ +|+||++.-    .++..+..+.+.  .
T Consensus       191 sgg--Idn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~t-vrvwd~rp~~p~~R~v~if~g~~hnfek  267 (338)
T KOG0265|consen  191 SGG--IDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNT-VRVWDVRPFAPSQRCVKIFQGHIHNFEK  267 (338)
T ss_pred             ecc--ccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccce-EEEEEecccCCCCceEEEeecchhhhhh
Confidence            888  6899999999999999999999999999999999999999999987 599999743    235666544432  2


Q ss_pred             eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEE
Q 019349          226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  305 (342)
Q Consensus       226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      +....+|+|+++   ++.+|+.|..+++||.....-           --.+|          +|...+..+.|.|..+-|
T Consensus       268 nlL~cswsp~~~---~i~ags~dr~vyvwd~~~r~~-----------lyklp----------Gh~gsvn~~~Fhp~e~ii  323 (338)
T KOG0265|consen  268 NLLKCSWSPNGT---KITAGSADRFVYVWDTTSRRI-----------LYKLP----------GHYGSVNEVDFHPTEPII  323 (338)
T ss_pred             hcceeeccCCCC---ccccccccceEEEeecccccE-----------EEEcC----------CcceeEEEeeecCCCcEE
Confidence            356789999999   999999999999999654321           11122          233344455566666889


Q ss_pred             EEEEeCCcEEE
Q 019349          306 SVITYNGYFVE  316 (342)
Q Consensus       306 ~~~~~dg~v~~  316 (342)
                      .++++|.+++.
T Consensus       324 ls~~sdk~i~l  334 (338)
T KOG0265|consen  324 LSCSSDKTIYL  334 (338)
T ss_pred             EEeccCceeEe
Confidence            99999998875

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.98  E-value=6.2e-29  Score=216.31  Aligned_cols=277  Identities=17%  Similarity=0.229  Sum_probs=211.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..+..+|.+++|+|++++|++++.++ +++|++.+++.....  +...+..+.+.++.+.+++++.       ++.|++|
T Consensus         6 ~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-------~~~i~i~   78 (289)
T cd00200           6 KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSS-------DKTIRLW   78 (289)
T ss_pred             cccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcC-------CCeEEEE
Confidence            46789999999999999999998766 699999887654433  3344545666666666666653       8999999


Q ss_pred             ECCCCcEEEEEecC-CceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           81 NTTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        81 d~~~~~~~~~~~~~-~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      |..+++.+..+..+ ..+.++.++++.  ++.+. ++.+++||+.+++....+..+.  ..+.++.+++++.++++++  
T Consensus        79 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~--  154 (289)
T cd00200          79 DLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHT--DWVNSVAFSPDGTFVASSS--  154 (289)
T ss_pred             EcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCC--CcEEEEEEcCcCCEEEEEc--
Confidence            99988777776644 489999998863  33334 7899999999888877776433  3567777777777777765  


Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  236 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (342)
                      .+|.|++||+++++.+..+..|..+|.+++|+|+++.|++++.||. +++||+++++.+..+..  +...+.+++|+|++
T Consensus       155 ~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~-i~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~  231 (289)
T cd00200         155 QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGT-IKLWDLSTGKCLGTLRG--HENGVNSVAFSPDG  231 (289)
T ss_pred             CCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCc-EEEEECCCCceecchhh--cCCceEEEEEcCCC
Confidence            5899999999999988899999999999999999999999999997 58999999888777643  24469999999998


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEE
Q 019349          237 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE  316 (342)
Q Consensus       237 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~  316 (342)
                      .   ++++++.||.|++|++..........       ..........|++              +++.|++++.||.+++
T Consensus       232 ~---~~~~~~~~~~i~i~~~~~~~~~~~~~-------~~~~~i~~~~~~~--------------~~~~l~~~~~d~~i~i  287 (289)
T cd00200         232 Y---LLASGSEDGTIRVWDLRTGECVQTLS-------GHTNSVTSLAWSP--------------DGKRLASGSADGTIRI  287 (289)
T ss_pred             c---EEEEEcCCCcEEEEEcCCceeEEEcc-------ccCCcEEEEEECC--------------CCCEEEEecCCCeEEe
Confidence            7   88888889999999998654322111       1111111123333              3478999999999999


Q ss_pred             EE
Q 019349          317 YI  318 (342)
Q Consensus       317 ~~  318 (342)
                      |+
T Consensus       288 w~  289 (289)
T cd00200         288 WD  289 (289)
T ss_pred             cC
Confidence            84

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.98  E-value=1e-29  Score=214.11  Aligned_cols=287  Identities=16%  Similarity=0.143  Sum_probs=221.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..|.+-|+|+++.|.+++|++|+.|+ ++|||+.++++......  ..+.-+.+..-.-+++.++       .|+.|+.|
T Consensus       148 ~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~g-------edk~VKCw  220 (460)
T KOG0285|consen  148 SGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAG-------EDKQVKCW  220 (460)
T ss_pred             hhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEec-------CCCeeEEE
Confidence            45677899999999999999999887 59999999988877643  4444455555556666655       48999999


Q ss_pred             ECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           81 NTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        81 d~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      |++..+.|+.+. +-+.|++++++|...++++   |.++++||+++...+..+..|.++..-+.+.  +-...+++++  
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~--~~dpqvit~S--  296 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ--PTDPQVITGS--  296 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEee--cCCCceEEec--
Confidence            999999988764 4468999999987655554   7799999999999999998887765443333  3233566666  


Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  236 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (342)
                      .|++|++||++.++...++..|+..|.+++.+|....+|++|.|.  |+-|++..|..+..+..  +.+.|++|+.+.|+
T Consensus       297 ~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn--ik~w~~p~g~f~~nlsg--h~~iintl~~nsD~  372 (460)
T KOG0285|consen  297 HDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN--IKQWKLPEGEFLQNLSG--HNAIINTLSVNSDG  372 (460)
T ss_pred             CCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc--ceeccCCccchhhcccc--ccceeeeeeeccCc
Confidence            699999999999999999999999999999999999999999995  68999999998888643  46779999999998


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEE
Q 019349          237 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE  316 (342)
Q Consensus       237 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~  316 (342)
                          ++++|+++|.+.+||-+.+..-++.+      .-..|...   -+    ...+++..|...+.+|+++..|.+|++
T Consensus       373 ----v~~~G~dng~~~fwdwksg~nyQ~~~------t~vqpGSl---~s----EagI~as~fDktg~rlit~eadKtIk~  435 (460)
T KOG0285|consen  373 ----VLVSGGDNGSIMFWDWKSGHNYQRGQ------TIVQPGSL---ES----EAGIFASCFDKTGSRLITGEADKTIKM  435 (460)
T ss_pred             ----eEEEcCCceEEEEEecCcCccccccc------ccccCCcc---cc----ccceeEEeecccCceEEeccCCcceEE
Confidence                69999999999999998765432100      01111111   00    011233344555689999999999999


Q ss_pred             EEEecC
Q 019349          317 YIFSIN  322 (342)
Q Consensus       317 ~~~~~~  322 (342)
                      |.-|..
T Consensus       436 ~keDe~  441 (460)
T KOG0285|consen  436 YKEDEH  441 (460)
T ss_pred             Eecccc
Confidence            987654

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.7e-28  Score=244.15  Aligned_cols=286  Identities=14%  Similarity=0.147  Sum_probs=201.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC----cE----EEEE-eeCCEEEEEEcCC-CCeEEEEcCCCCCCCCC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG----RL----CYER-AVGAFSIVEMLYS-SSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~----~~----~~~~-~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~d   74 (342)
                      +...|.+++|+|+|++||+|+.++ ++|||+...    ..    .... ....+..+.+... .+.++.++       .|
T Consensus       482 ~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~-------~D  554 (793)
T PLN00181        482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSN-------FE  554 (793)
T ss_pred             CCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEe-------CC
Confidence            677899999999999999998877 699997542    10    1111 1233444555433 34555444       48


Q ss_pred             CeEEEEECCCCcEEEEEe-cCCceEEEEEcC-C--eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEee-CCCcc
Q 019349           75 RRLCLFNTTTGTALRELN-FLTSILAVRLNK-K--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSP-SLNAC  148 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~-~--~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  148 (342)
                      ++|++||+.+++.+..+. +...|.+++|++ +  .++.++ |+.|++||+.+++.+..+..+   ..++++.+ .+++.
T Consensus       555 g~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~g~  631 (793)
T PLN00181        555 GVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK---ANICCVQFPSESGR  631 (793)
T ss_pred             CeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC---CCeEEEEEeCCCCC
Confidence            999999999998888775 455899999985 3  333444 889999999999888887643   23556655 35677


Q ss_pred             EEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC------eeEEEeccC
Q 019349          149 FLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA------TKSYSFRRG  221 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~------~~~~~~~~~  221 (342)
                      .+++++  .||.|++||+++.+ ++..+.+|...|+++.|. ++.+|+++|.|++ |++||+..+      +.+..+.. 
T Consensus       632 ~latgs--~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~-ikiWd~~~~~~~~~~~~l~~~~g-  706 (793)
T PLN00181        632 SLAFGS--ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNT-LKLWDLSMSISGINETPLHSFMG-  706 (793)
T ss_pred             EEEEEe--CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCE-EEEEeCCCCccccCCcceEEEcC-
Confidence            888887  68999999998765 567788999999999997 7889999999998 589999743      45666643 


Q ss_pred             cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCc-cccccccccccccccccccccceeeeccCCCc
Q 019349          222 TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRT-SSILGSILPESVNEVLDPADHHVLRNAFPAGV  300 (342)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (342)
                       +...+.+++|+|++.   +|++|+.|++|++|+.....+....... .....+.         ....+...+..+.+.+
T Consensus       707 -h~~~i~~v~~s~~~~---~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~---------~~~~~~~~V~~v~ws~  773 (793)
T PLN00181        707 -HTNVKNFVGLSVSDG---YIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGL---------EVDDASQFISSVCWRG  773 (793)
T ss_pred             -CCCCeeEEEEcCCCC---EEEEEeCCCEEEEEECCCCCceEEEecccCCccccc---------ccCCCCcEEEEEEEcC
Confidence             345588999999998   9999999999999997655432110000 0000000         0001111222333344


Q ss_pred             cccEEEEEEeCCcEEEEEE
Q 019349          301 KRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       301 ~~~~l~~~~~dg~v~~~~~  319 (342)
                      ++..|++++.||.|++|++
T Consensus       774 ~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        774 QSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             CCCeEEEecCCCcEEEEec
Confidence            4589999999999999986

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=7.5e-29  Score=230.88  Aligned_cols=279  Identities=16%  Similarity=0.232  Sum_probs=216.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc--EEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      +...|.++.|+++|+.|++++.++ +++|+....+  +....  +...+..+.+.+++.+++.++       .|.+|+||
T Consensus       158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s-------~D~tiriw  230 (456)
T KOG0266|consen  158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGS-------DDKTLRIW  230 (456)
T ss_pred             ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEec-------CCceEEEe
Confidence            367899999999999999987777 5999997666  44443  445666677777777665554       59999999


Q ss_pred             EC-CCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349           81 NT-TTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        81 d~-~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      |+ ..+.++.++. |...|.+++|+++...+++   |++|+|||+++++++..+..|..  .+.++++++++.++++++ 
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~--~is~~~f~~d~~~l~s~s-  307 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSD--GISGLAFSPDGNLLVSAS-  307 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCC--ceEEEEECCCCCEEEEcC-
Confidence            99 5557777775 5568999999998744433   88999999999999999987766  577778888899999886 


Q ss_pred             CCccEEEEEEccCCc--eeEEEecccCC--eeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc-eeEEEE
Q 019349          156 TTKGSVLVYNVMELH--SHCEIDAHQAP--LAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP-STIFSL  230 (342)
Q Consensus       156 ~~~g~i~iwd~~~~~--~~~~~~~h~~~--v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~-~~v~~l  230 (342)
                       .||.|++||+.++.  ++..+..+..+  ++++.|+|+|.+|++++.|++ +++||+..+..+..+..+... ..+.+.
T Consensus       308 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~-~~~w~l~~~~~~~~~~~~~~~~~~~~~~  385 (456)
T KOG0266|consen  308 -YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRT-LKLWDLRSGKSVGTYTGHSNLVRCIFSP  385 (456)
T ss_pred             -CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCe-EEEEEccCCcceeeecccCCcceeEecc
Confidence             59999999999998  56777777665  999999999999999999987 599999999988887654332 245666


Q ss_pred             EEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccc-ccccccccccccccceeeeccCCCccccEEEEEE
Q 019349          231 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSI-LPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  309 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (342)
                      .+++.++   ++.+|+.|+.|++|++.........       .++ .+......|++..              +.+++.+
T Consensus       386 ~~~~~~~---~i~sg~~d~~v~~~~~~s~~~~~~l-------~~h~~~~~~~~~~~~~~--------------~~~~s~s  441 (456)
T KOG0266|consen  386 TLSTGGK---LIYSGSEDGSVYVWDSSSGGILQRL-------EGHSKAAVSDLSSHPTE--------------NLIASSS  441 (456)
T ss_pred             cccCCCC---eEEEEeCCceEEEEeCCccchhhhh-------cCCCCCceeccccCCCc--------------CeeeecC
Confidence            6788999   9999999999999999876544321       112 2222334555544              6777777


Q ss_pred             --eCCcEEEEEEe
Q 019349          310 --YNGYFVEYIFS  320 (342)
Q Consensus       310 --~dg~v~~~~~~  320 (342)
                        .|+.+++|..+
T Consensus       442 ~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  442 FEGDGLIRLWKYD  454 (456)
T ss_pred             cCCCceEEEecCC
Confidence              68999999653

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=99.97  E-value=9.8e-30  Score=220.93  Aligned_cols=279  Identities=14%  Similarity=0.194  Sum_probs=218.1

Q ss_pred             CCCCeEEEEEcCCCC-EEEEEcCCc-EEEEeCCC--C----cEEEE------E----eeCCEEEEEEcCCCCeEEEEcCC
Q 019349            6 SSYPVFFVSFNQDNS-GFALSTKDG-FKIFDSST--G----RLCYE------R----AVGAFSIVEMLYSSSLLAIVGAG   67 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~-~la~g~~~g-~~v~d~~~--~----~~~~~------~----~~~~~~~~~~~~~~~~~~~~~~g   67 (342)
                      ++.+|.+.+|+|-.. .|++|+.+. .|+|++..  .    ++.+.      .    ....+..++|..+++.+++..  
T Consensus       177 ~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~--  254 (524)
T KOG0273|consen  177 HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGS--  254 (524)
T ss_pred             CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEee--
Confidence            788999999999776 788887775 59999863  1    11111      0    125677788888888888765  


Q ss_pred             CCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEee
Q 019349           68 EQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSP  143 (342)
Q Consensus        68 ~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  143 (342)
                           .++.+++|+.. |..+.++. +.++|.++.|++++.++++   |+++.+||..++...+.+..+..+.  ..+.+
T Consensus       255 -----~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~--lDVdW  326 (524)
T KOG0273|consen  255 -----EDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPA--LDVDW  326 (524)
T ss_pred             -----cCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCc--cceEE
Confidence                 48999999964 55565554 5679999999998755544   8999999999998888887766652  12222


Q ss_pred             CCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349          144 SLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       144 ~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~  223 (342)
                      -. ..-+++++  .||.|+|+.+....++.++.+|.++|++|.|+|.|.+|+|+|.|+++ |||..........++.+  
T Consensus       327 ~~-~~~F~ts~--td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~Tl-kiWs~~~~~~~~~l~~H--  400 (524)
T KOG0273|consen  327 QS-NDEFATSS--TDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTL-KIWSMGQSNSVHDLQAH--  400 (524)
T ss_pred             ec-CceEeecC--CCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCee-EeeecCCCcchhhhhhh--
Confidence            22 22566666  69999999999999999999999999999999999999999999985 99999888877777543  


Q ss_pred             ceeEEEEEEecCCC------cccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccC
Q 019349          224 PSTIFSLSFGQSMQ------FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFP  297 (342)
Q Consensus       224 ~~~v~~l~fs~d~~------~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (342)
                      ..+|+.+.|+|++.      .+..|++++.|++|++||+..+.+..                     .+..|...++.++
T Consensus       401 skei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~---------------------~f~kH~~pVysva  459 (524)
T KOG0273|consen  401 SKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIH---------------------TLMKHQEPVYSVA  459 (524)
T ss_pred             ccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeE---------------------eeccCCCceEEEE
Confidence            55699999998642      11389999999999999999876632                     2345666778888


Q ss_pred             CCccccEEEEEEeCCcEEEEEEec
Q 019349          298 AGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       298 ~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      |.+.+.++++|+.||.|++|+...
T Consensus       460 fS~~g~ylAsGs~dg~V~iws~~~  483 (524)
T KOG0273|consen  460 FSPNGRYLASGSLDGCVHIWSTKT  483 (524)
T ss_pred             ecCCCcEEEecCCCCeeEeccccc
Confidence            899899999999999999998654

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=99.97  E-value=7.8e-29  Score=202.53  Aligned_cols=237  Identities=14%  Similarity=0.166  Sum_probs=183.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..|...|..+..++||++.++++.|+ +|+||+.+++..  +..|...+..+++..+...+  +++     +.|++|++|
T Consensus        60 ~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qi--vSG-----SrDkTiklw  132 (315)
T KOG0279|consen   60 TGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQI--VSG-----SRDKTIKLW  132 (315)
T ss_pred             eccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCcee--ecC-----CCcceeeee
Confidence            45778899999999999999998887 599999998544  45555566666665554444  444     369999999


Q ss_pred             ECCCCcEEEEEe-c--CCceEEEEEcCC--eEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349           81 NTTTGTALRELN-F--LTSILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (342)
Q Consensus        81 d~~~~~~~~~~~-~--~~~v~~i~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  152 (342)
                      |...+ +..++. .  ..-|.++.|+|+  ..++++   |+++++||+++.+....+..+.+  .+..+..+|||..+++
T Consensus       133 nt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~--~v~t~~vSpDGslcas  209 (315)
T KOG0279|consen  133 NTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG--YVNTVTVSPDGSLCAS  209 (315)
T ss_pred             eeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc--cEEEEEECCCCCEEec
Confidence            98754 444443 2  447999999987  444444   89999999999888877766555  4556666788889998


Q ss_pred             eCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc-------Cce
Q 019349          153 PASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-------YPS  225 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~-------~~~  225 (342)
                      +|  .||.+.+||++.++.+.++. |..+|++++|+|+.-.|+.+-..+  |||||+.++..+.+++...       ...
T Consensus       210 Gg--kdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~~at~~s--IkIwdl~~~~~v~~l~~d~~g~s~~~~~~  284 (315)
T KOG0279|consen  210 GG--KDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLCAATATS--IKIWDLESKAVVEELKLDGIGPSSKAGDP  284 (315)
T ss_pred             CC--CCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEeeccCCc--eEEEeccchhhhhhccccccccccccCCc
Confidence            88  69999999999999987764 788999999999977777776543  6899999998887765321       122


Q ss_pred             eEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      ...+++|++||.   .|.+|-.|+.|++|.+..
T Consensus       285 ~clslaws~dG~---tLf~g~td~~irv~qv~~  314 (315)
T KOG0279|consen  285 ICLSLAWSADGQ---TLFAGYTDNVIRVWQVAK  314 (315)
T ss_pred             EEEEEEEcCCCc---EEEeeecCCcEEEEEeec
Confidence            367899999999   999999999999998753

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=99.97  E-value=8.3e-29  Score=199.36  Aligned_cols=267  Identities=12%  Similarity=0.128  Sum_probs=202.2

Q ss_pred             CEEEEEc-CCcEEEEeCCCCcEEEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc--EEEEEecC
Q 019349           20 SGFALST-KDGFKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT--ALRELNFL   94 (342)
Q Consensus        20 ~~la~g~-~~g~~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~--~~~~~~~~   94 (342)
                      -+|++++ +.++|+|...+|...+..+  ...+..+++.++...++.++        ...||+||+.++.  ++.+++.+
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~--------~qhvRlyD~~S~np~Pv~t~e~h   82 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG--------NQHVRLYDLNSNNPNPVATFEGH   82 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc--------CCeeEEEEccCCCCCceeEEecc
Confidence            3566654 5578999999998876654  36677788888887777665        4699999998765  57777765


Q ss_pred             -CceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc
Q 019349           95 -TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (342)
Q Consensus        95 -~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~  170 (342)
                       ..|.++.|..++....+   |++++|||++...+.+.++..   ..+..+.++|+..-|+++.  .+|.|++||+.+..
T Consensus        83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~d--qsg~irvWDl~~~~  157 (311)
T KOG0315|consen   83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGD--QSGNIRVWDLGENS  157 (311)
T ss_pred             CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeec--CCCcEEEEEccCCc
Confidence             68999999888766655   889999999998877777543   3455666677777888776  78999999999876


Q ss_pred             eeEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc----CcCceeEEEEEEecCCCcccEEEEE
Q 019349          171 SHCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR----GTYPSTIFSLSFGQSMQFQDILVAT  245 (342)
Q Consensus       171 ~~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~----~~~~~~v~~l~fs~d~~~~~~l~~~  245 (342)
                      +...+ +....+|.++...|||.+|+.+-..|+. .+|++.+++....+..    ..+...+..+.||||++   +||++
T Consensus       158 c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~c-yvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k---~lat~  233 (311)
T KOG0315|consen  158 CTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNC-YVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK---YLATC  233 (311)
T ss_pred             cccccCCCCCcceeeEEEcCCCcEEEEecCCccE-EEEEccCCCccccceEhhheecccceEEEEEECCCCc---EEEee
Confidence            65443 4556789999999999999999999997 5999987653322211    13455688999999999   99999


Q ss_pred             eCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349          246 SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       246 s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                      |.|.+++||+.+..-+.          ...+......+|+.+          |..++.+|+++++|+.+++|++...+
T Consensus       234 ssdktv~iwn~~~~~kl----------e~~l~gh~rWvWdc~----------FS~dg~YlvTassd~~~rlW~~~~~k  291 (311)
T KOG0315|consen  234 SSDKTVKIWNTDDFFKL----------ELVLTGHQRWVWDCA----------FSADGEYLVTASSDHTARLWDLSAGK  291 (311)
T ss_pred             cCCceEEEEecCCceee----------EEEeecCCceEEeee----------eccCccEEEecCCCCceeecccccCc
Confidence            99999999998876211          111112223456554          36677999999999999999876543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=9.6e-29  Score=197.55  Aligned_cols=275  Identities=14%  Similarity=0.175  Sum_probs=201.6

Q ss_pred             CCCCCeEEEEEcCCCCE-EEEEcCCcEEEEeCCCCcEEEEEeeCCEEE--EEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNSG-FALSTKDGFKIFDSSTGRLCYERAVGAFSI--VEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~-la~g~~~g~~v~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      -..++|+.+.||-||++ |++|++..+|+||+..+.++.+...++-.+  +...++...++.+|+       |+.+.+||
T Consensus        15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~Gg-------Dk~v~vwD   87 (307)
T KOG0316|consen   15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGG-------DKAVQVWD   87 (307)
T ss_pred             ccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCC-------CceEEEEE
Confidence            35678999999999998 556677789999999998876655544444  445555666666655       89999999


Q ss_pred             CCCCcEEEEEecC-CceEEEEEcCCeEEEEE---CCeEEEEECCCC--ceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349           82 TTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTL--AILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        82 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      ..+|+.++.+..+ ..|..+.|+.+.-++++   |.++++||.++.  ++++.+....  .++.++....  ..|+. |+
T Consensus        88 V~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~--D~V~Si~v~~--heIva-GS  162 (307)
T KOG0316|consen   88 VNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAK--DGVSSIDVAE--HEIVA-GS  162 (307)
T ss_pred             cccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhc--CceeEEEecc--cEEEe-ec
Confidence            9999999998754 59999999998877766   889999999764  5666665433  3455544432  24444 44


Q ss_pred             CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC
Q 019349          156 TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  235 (342)
Q Consensus       156 ~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d  235 (342)
                       .||+++.||++.+....-.-  ..||+|+.|++||+.++.++-|++ +|+.|-.+|+++..+..+....--...+|+..
T Consensus       163 -~DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~st-lrLlDk~tGklL~sYkGhkn~eykldc~l~qs  238 (307)
T KOG0316|consen  163 -VDGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDST-LRLLDKETGKLLKSYKGHKNMEYKLDCCLNQS  238 (307)
T ss_pred             -cCCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccce-eeecccchhHHHHHhcccccceeeeeeeeccc
Confidence             79999999999998665443  458999999999999999999987 59999999999988865543333455678887


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEE
Q 019349          236 MQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV  315 (342)
Q Consensus       236 ~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~  315 (342)
                      ..   .+++||+||.|++||+.......+....                    ..+.+..+.+.|....++++...+.+-
T Consensus       239 dt---hV~sgSEDG~Vy~wdLvd~~~~sk~~~~--------------------~~v~v~dl~~hp~~~~f~~A~~~~~~~  295 (307)
T KOG0316|consen  239 DT---HVFSGSEDGKVYFWDLVDETQISKLSVV--------------------STVIVTDLSCHPTMDDFITATGHGDLF  295 (307)
T ss_pred             ce---eEEeccCCceEEEEEeccceeeeeeccC--------------------CceeEEeeecccCccceeEecCCceec
Confidence            77   8999999999999999766532211100                    011223344455557777777766555


Q ss_pred             EEE
Q 019349          316 EYI  318 (342)
Q Consensus       316 ~~~  318 (342)
                      .+.
T Consensus       296 ~~~  298 (307)
T KOG0316|consen  296 WYQ  298 (307)
T ss_pred             eee
Confidence            443

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.9e-29  Score=212.77  Aligned_cols=277  Identities=13%  Similarity=0.135  Sum_probs=214.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..+..+|..+-|.|+-..++++++++ +++||..++++......  ..+..+.+...+.+++.++.       |=.+++|
T Consensus       105 ~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSs-------Dl~~~LW  177 (406)
T KOG0295|consen  105 AGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSS-------DLSAKLW  177 (406)
T ss_pred             hccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCC-------ccchhhe
Confidence            35677899999999999999998887 69999999988655444  34444555555666666654       5669999


Q ss_pred             ECCC-CcEEEEE-ecCCceEEEEEcCC--eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349           81 NTTT-GTALREL-NFLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        81 d~~~-~~~~~~~-~~~~~v~~i~~~~~--~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      |..+ .+++... .+...|.++++-|.  .++.++ |++|+.|++.++-+++++..+..  -+-.+.++.|+..+|+++ 
T Consensus       178 d~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~e--wvr~v~v~~DGti~As~s-  254 (406)
T KOG0295|consen  178 DFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSE--WVRMVRVNQDGTIIASCS-  254 (406)
T ss_pred             eHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchH--hEEEEEecCCeeEEEecC-
Confidence            9876 4444433 44557888888654  445555 89999999999999999977655  344566778888999888 


Q ss_pred             CCccEEEEEEccCCceeEEEecccCCeeEEEECCC---------------CCEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349          156 TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSN---------------GMYIATASEQGTIIRVFLVSEATKSYSFRR  220 (342)
Q Consensus       156 ~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~d---------------g~~lat~s~dg~~irlwd~~~~~~~~~~~~  220 (342)
                       .|.+|++|-+.++++...+..|+.+|.|++|-|.               |.++.++|.|++ ||+||+.+|.++.++..
T Consensus       255 -~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDkt-Ik~wdv~tg~cL~tL~g  332 (406)
T KOG0295|consen  255 -NDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKT-IKIWDVSTGMCLFTLVG  332 (406)
T ss_pred             -CCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccce-EEEEeccCCeEEEEEec
Confidence             6899999999999999999999999999999654               358999999997 69999999999999864


Q ss_pred             CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCc
Q 019349          221 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV  300 (342)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (342)
                      +  ..-|..++|+|-|+   ||+++.+|+++++||++.....+...-+..         |            +..+.|..
T Consensus       333 h--dnwVr~~af~p~Gk---yi~ScaDDktlrvwdl~~~~cmk~~~ah~h---------f------------vt~lDfh~  386 (406)
T KOG0295|consen  333 H--DNWVRGVAFSPGGK---YILSCADDKTLRVWDLKNLQCMKTLEAHEH---------F------------VTSLDFHK  386 (406)
T ss_pred             c--cceeeeeEEcCCCe---EEEEEecCCcEEEEEeccceeeeccCCCcc---------e------------eEEEecCC
Confidence            3  45699999999999   999999999999999998776543221111         1            11222233


Q ss_pred             cccEEEEEEeCCcEEEEE
Q 019349          301 KRASVSVITYNGYFVEYI  318 (342)
Q Consensus       301 ~~~~l~~~~~dg~v~~~~  318 (342)
                      ...++++|+-|-.+++|.
T Consensus       387 ~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  387 TAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             CCceEEeccccceeeeee
Confidence            346999999999999985

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.8e-28  Score=221.70  Aligned_cols=278  Identities=10%  Similarity=0.113  Sum_probs=224.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            8 YPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      ..|++.+|++.-..||+|-..|. .+|++....+++.+..+  .+..+.+...++.+++.+.      .-+.+-+|+.++
T Consensus       266 ~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~------klgQLlVweWqs  339 (893)
T KOG0291|consen  266 SKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS------KLGQLLVWEWQS  339 (893)
T ss_pred             cceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC------ccceEEEEEeec
Confidence            78999999999999999999885 89999999998887664  4555555555889988776      367999999998


Q ss_pred             CcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349           85 GTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (342)
Q Consensus        85 ~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~  160 (342)
                      ...+...+. -..+.+++.+||+..+++   |++|+|||..++-++.++..|..  ++.++.+...+..+.+++  -||+
T Consensus       340 EsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts--~Vt~v~f~~~g~~llssS--LDGt  415 (893)
T KOG0291|consen  340 ESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS--GVTAVQFTARGNVLLSSS--LDGT  415 (893)
T ss_pred             cceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC--ceEEEEEEecCCEEEEee--cCCe
Confidence            888777664 458999999999777666   88999999999999999976655  566677767777888877  6999


Q ss_pred             EEEEEccCCceeEEEeccc-CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcc
Q 019349          161 VLVYNVMELHSHCEIDAHQ-APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ  239 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~-~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~  239 (342)
                      |+.||+......+++.... -...|++..|.|..+..|+.|.--|.+|++++|+++..+..  |.++|.+++|+|++.  
T Consensus       416 VRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsG--HEgPVs~l~f~~~~~--  491 (893)
T KOG0291|consen  416 VRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSG--HEGPVSGLSFSPDGS--  491 (893)
T ss_pred             EEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcC--CCCcceeeEEccccC--
Confidence            9999999999999987643 35789999999999999999987789999999999988854  467899999999999  


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          240 DILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       240 ~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                       .|+++|.|.||++||+=......         ..+ +     +      +--+..+.|.|++..|++++.||.+.+|+.
T Consensus       492 -~LaS~SWDkTVRiW~if~s~~~v---------Etl-~-----i------~sdvl~vsfrPdG~elaVaTldgqItf~d~  549 (893)
T KOG0291|consen  492 -LLASGSWDKTVRIWDIFSSSGTV---------ETL-E-----I------RSDVLAVSFRPDGKELAVATLDGQITFFDI  549 (893)
T ss_pred             -eEEeccccceEEEEEeeccCcee---------eeE-e-----e------ccceeEEEEcCCCCeEEEEEecceEEEEEh
Confidence             99999999999999975332100         000 0     0      001234556777799999999999999976


Q ss_pred             ec
Q 019349          320 SI  321 (342)
Q Consensus       320 ~~  321 (342)
                      ..
T Consensus       550 ~~  551 (893)
T KOG0291|consen  550 KE  551 (893)
T ss_pred             hh
Confidence            43

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=3.6e-29  Score=211.18  Aligned_cols=238  Identities=16%  Similarity=0.189  Sum_probs=203.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC-cE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG-RL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .++...|..++|+..|++|++++.|- +++||.++. +.  ....+.+.+..+.+.+.+++++.++.       |++|+.
T Consensus       147 rGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~sr-------D~tik~  219 (406)
T KOG0295|consen  147 RGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSR-------DNTIKA  219 (406)
T ss_pred             hccccceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeeccc-------ccceeE
Confidence            46778899999999999999999887 799998774 22  23345678888999999988887765       999999


Q ss_pred             EECCCCcEEEEEecCC-ceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC----------
Q 019349           80 FNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL----------  145 (342)
Q Consensus        80 wd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----------  145 (342)
                      |+..+|.++.++..+. -|+.+..+.|+.++++   |.++++|-+.++++...+..|.++....++++..          
T Consensus       220 We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~  299 (406)
T KOG0295|consen  220 WECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATG  299 (406)
T ss_pred             EecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccC
Confidence            9999999999987654 7899999999998888   7799999999998777787788876666555421          


Q ss_pred             --C-ccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc
Q 019349          146 --N-ACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT  222 (342)
Q Consensus       146 --~-~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~  222 (342)
                        + +.+++.++  .|++|++||+.++.++.++.+|.+.|..++|+|.|+||+++.+|++ +|+||++++++++.+..  
T Consensus       300 ~~~~~~~l~s~S--rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDkt-lrvwdl~~~~cmk~~~a--  374 (406)
T KOG0295|consen  300 STNGGQVLGSGS--RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKT-LRVWDLKNLQCMKTLEA--  374 (406)
T ss_pred             CCCCccEEEeec--ccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCc-EEEEEeccceeeeccCC--
Confidence              1 24566555  6999999999999999999999999999999999999999999998 59999999999998864  


Q ss_pred             CceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349          223 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       223 ~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      ++.-++++.|+.+..   ++++|+-|.++++|..
T Consensus       375 h~hfvt~lDfh~~~p---~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  375 HEHFVTSLDFHKTAP---YVVTGSVDQTVKVWEC  405 (406)
T ss_pred             CcceeEEEecCCCCc---eEEeccccceeeeeec
Confidence            355699999999988   9999999999999974

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.97  E-value=8.7e-28  Score=211.41  Aligned_cols=283  Identities=16%  Similarity=0.171  Sum_probs=219.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE-----eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER-----AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      ...|..-|+|++|+|||+++|+.+.|+ +.+||-.+++.+...     |.+.+..+.|.+++..++++++       |.+
T Consensus       186 ~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa-------Dkt  258 (603)
T KOG0318|consen  186 FREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA-------DKT  258 (603)
T ss_pred             ccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC-------Cce
Confidence            345666799999999999999877776 799999999887654     4588999999999999999987       899


Q ss_pred             EEEEECCCCcEEEEEecCCc----eEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           77 LCLFNTTTGTALRELNFLTS----ILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        77 i~iwd~~~~~~~~~~~~~~~----v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      ++|||+.+++++.++.....    -.++-|.++.++..+ +|.|.+++..++..++.+..|.  ..+.+++.++++.+|.
T Consensus       259 ~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~  336 (603)
T KOG0318|consen  259 IKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIY  336 (603)
T ss_pred             EEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEE
Confidence            99999999999999887654    345566788877777 9999999999998888876654  4688888888898998


Q ss_pred             EeCCCCccEEEEEEccCCcee-----------EEEeccc-----------------------------------------
Q 019349          152 VPASTTKGSVLVYNVMELHSH-----------CEIDAHQ-----------------------------------------  179 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~~~~-----------~~~~~h~-----------------------------------------  179 (342)
                      +++  .||.|.-||..++..-           ..+..++                                         
T Consensus       337 Sgs--yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~  414 (603)
T KOG0318|consen  337 SGS--YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVL  414 (603)
T ss_pred             eec--cCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEc
Confidence            887  5899999998654311           1010000                                         


Q ss_pred             -----------------------------CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEE
Q 019349          180 -----------------------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL  230 (342)
Q Consensus       180 -----------------------------~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l  230 (342)
                                                   -...+++++|+++.+|.|++||. ++|+.+..++...+-....+.++|+++
T Consensus       415 ~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgk-vhvysl~g~~l~ee~~~~~h~a~iT~v  493 (603)
T KOG0318|consen  415 SDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGK-VHVYSLSGDELKEEAKLLEHRAAITDV  493 (603)
T ss_pred             CCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccce-EEEEEecCCcccceeeeecccCCceEE
Confidence                                         01346889999999999999998 589999876644433333457889999


Q ss_pred             EEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe
Q 019349          231 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY  310 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (342)
                      +||||+.   |||++...+.|-+||+...+....   .   ..-+........|+|..              ..+++||.
T Consensus       494 aySpd~~---yla~~Da~rkvv~yd~~s~~~~~~---~---w~FHtakI~~~aWsP~n--------------~~vATGSl  550 (603)
T KOG0318|consen  494 AYSPDGA---YLAAGDASRKVVLYDVASREVKTN---R---WAFHTAKINCVAWSPNN--------------KLVATGSL  550 (603)
T ss_pred             EECCCCc---EEEEeccCCcEEEEEcccCceecc---e---eeeeeeeEEEEEeCCCc--------------eEEEeccc
Confidence            9999999   999999999999999987665211   1   11112222234677766              78999999


Q ss_pred             CCcEEEEEEe
Q 019349          311 NGYFVEYIFS  320 (342)
Q Consensus       311 dg~v~~~~~~  320 (342)
                      |-.|++|+++
T Consensus       551 Dt~Viiysv~  560 (603)
T KOG0318|consen  551 DTNVIIYSVK  560 (603)
T ss_pred             cceEEEEEcc
Confidence            9999999875

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.97  E-value=2.9e-28  Score=197.51  Aligned_cols=259  Identities=15%  Similarity=0.176  Sum_probs=195.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE----eeCCEEEEEEcC-CCCeEEEEcCCCCCCCCCCeE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER----AVGAFSIVEMLY-SSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      +.+.++|.+++|+.+|+.|++|+.++ +++|+++..++..+.    +...+.-+.+.+ .++.++.+++       |++|
T Consensus        17 ~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~-------dk~i   89 (313)
T KOG1407|consen   17 QGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASG-------DKTI   89 (313)
T ss_pred             hhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecC-------CceE
Confidence            35677899999999999999998776 599999887655433    223344444443 4567777776       8999


Q ss_pred             EEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           78 CLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      ++||.++++++..+.....-.-+.++|+.-.++.   |+.|.+.|.++.+.....+...... -++.. .++..++++.|
T Consensus        90 r~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~n-e~~w~-~~nd~Fflt~G  167 (313)
T KOG1407|consen   90 RIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVN-EISWN-NSNDLFFLTNG  167 (313)
T ss_pred             EEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceee-eeeec-CCCCEEEEecC
Confidence            9999999999999987776666777776544433   7799999998877665554322211 22333 33444455554


Q ss_pred             CCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349          155 STTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  234 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~  234 (342)
                         .|+|.|......+++.++++|.....||.|+|+|+++|+||.|.. +-|||+...-++..+.+.  .-+|..|+||.
T Consensus       168 ---lG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl-vSLWD~~ELiC~R~isRl--dwpVRTlSFS~  241 (313)
T KOG1407|consen  168 ---LGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL-VSLWDVDELICERCISRL--DWPVRTLSFSH  241 (313)
T ss_pred             ---CceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce-eeccChhHhhhheeeccc--cCceEEEEecc
Confidence               599999999999999999999999999999999999999999975 689999988777777654  34599999999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccc
Q 019349          235 SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPAD  288 (342)
Q Consensus       235 d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (342)
                      ||+   +||++|+|..|-|=+++++...-..        ..-.+.+...|+|..
T Consensus       242 dg~---~lASaSEDh~IDIA~vetGd~~~eI--------~~~~~t~tVAWHPk~  284 (313)
T KOG1407|consen  242 DGR---MLASASEDHFIDIAEVETGDRVWEI--------PCEGPTFTVAWHPKR  284 (313)
T ss_pred             Ccc---eeeccCccceEEeEecccCCeEEEe--------eccCCceeEEecCCC
Confidence            999   9999999999999999888753210        112234566888865

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=1.6e-28  Score=219.95  Aligned_cols=243  Identities=14%  Similarity=0.215  Sum_probs=195.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEE--EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFS--IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .....|.++.|+|....+.++--+| +.|||.++..+..+.+...+.  ...+....+.+++.+       +|..|++++
T Consensus        11 ~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~Gs-------DD~~IrVfn   83 (794)
T KOG0276|consen   11 SRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGS-------DDMQIRVFN   83 (794)
T ss_pred             ccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEec-------CCceEEEEe
Confidence            4678999999999999988887666 799999998887666554333  344444445554443       599999999


Q ss_pred             CCCCcEEEEEec-CCceEEEEEcCCeEEEEE--C-CeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           82 TTTGTALRELNF-LTSILAVRLNKKRLVIVL--R-EKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        82 ~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~--d-~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      ..+++.+..++. +..|++|+.+|....+.+  | -.|++||.+.. .+.++++.|.+..-.+++.|. |...+|+++  
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPk-D~ntFaS~s--  160 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPK-DPNTFASAS--  160 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCC-Cccceeeee--
Confidence            999999999875 458999999998766654  4 49999999876 667788888775444455443 345667766  


Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeEEEECCCC--CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG--MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  234 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg--~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~  234 (342)
                      -|++|+||.+.+..+..++++|...|+||.|-+-|  .+|+||++|.+ +||||.++.+++.++..+  ..+|..+.|+|
T Consensus       161 LDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~t-iKvWDyQtk~CV~TLeGH--t~Nvs~v~fhp  237 (794)
T KOG0276|consen  161 LDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLT-IKVWDYQTKSCVQTLEGH--TNNVSFVFFHP  237 (794)
T ss_pred             ccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCce-EEEeecchHHHHHHhhcc--cccceEEEecC
Confidence            68999999999999999999999999999998755  69999999976 699999999999998654  44699999999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          235 SMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       235 d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      .-.   ++++||+|||++||.-.+-+.++
T Consensus       238 ~lp---iiisgsEDGTvriWhs~Ty~lE~  263 (794)
T KOG0276|consen  238 ELP---IIISGSEDGTVRIWNSKTYKLEK  263 (794)
T ss_pred             CCc---EEEEecCCccEEEecCcceehhh
Confidence            998   99999999999999987765443

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=99.97  E-value=2e-27  Score=195.42  Aligned_cols=243  Identities=8%  Similarity=0.028  Sum_probs=191.3

Q ss_pred             EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC-ceEEEEEcCCeEEEEE---CCeE
Q 019349           40 LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKT  115 (342)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~---d~~i  115 (342)
                      .+...|.+.+..+.|..+++.++..+.       |+++.|||.-+...+..++.+. -|...+++|...+++.   |+..
T Consensus        49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSq-------DGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~C  121 (343)
T KOG0286|consen   49 RTLKGHLNKIYAMDWSTDSRRIVSASQ-------DGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKC  121 (343)
T ss_pred             EEecccccceeeeEecCCcCeEEeecc-------CCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCcee
Confidence            345556678888888888888877764       9999999999888888888876 6899999998877766   8899


Q ss_pred             EEEECCCC------ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECC
Q 019349          116 YIYDANTL------AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS  189 (342)
Q Consensus       116 ~i~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~  189 (342)
                      .||++.+.      +..+.+..|..  .+.+..+-+|+ .|++++  .|.+.-+||+++++.+..|.+|.+.|.+++++|
T Consensus       122 siy~ls~~d~~g~~~v~r~l~gHtg--ylScC~f~dD~-~ilT~S--GD~TCalWDie~g~~~~~f~GH~gDV~slsl~p  196 (343)
T KOG0286|consen  122 SIYPLSTRDAEGNVRVSRELAGHTG--YLSCCRFLDDN-HILTGS--GDMTCALWDIETGQQTQVFHGHTGDVMSLSLSP  196 (343)
T ss_pred             EEEecccccccccceeeeeecCccc--eeEEEEEcCCC-ceEecC--CCceEEEEEcccceEEEEecCCcccEEEEecCC
Confidence            99999754      33445555544  34344443444 555655  489999999999999999999999999999999


Q ss_pred             -CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCc
Q 019349          190 -NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRT  268 (342)
Q Consensus       190 -dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~  268 (342)
                       +++.+++|+.|+.. +|||++.+.....|..+  ...|++++|.|+|.   -+++||+|++.++||++...+.....  
T Consensus       197 ~~~ntFvSg~cD~~a-klWD~R~~~c~qtF~gh--esDINsv~ffP~G~---afatGSDD~tcRlyDlRaD~~~a~ys--  268 (343)
T KOG0286|consen  197 SDGNTFVSGGCDKSA-KLWDVRSGQCVQTFEGH--ESDINSVRFFPSGD---AFATGSDDATCRLYDLRADQELAVYS--  268 (343)
T ss_pred             CCCCeEEecccccce-eeeeccCcceeEeeccc--ccccceEEEccCCC---eeeecCCCceeEEEeecCCcEEeeec--
Confidence             99999999999975 89999999999999643  56699999999998   89999999999999999876643211  


Q ss_pred             cccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          269 SSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                              +         +.....++.++|...+..|++|..|..+++|+.
T Consensus       269 --------~---------~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDt  302 (343)
T KOG0286|consen  269 --------H---------DSIICGITSVAFSKSGRLLFAGYDDFTCNVWDT  302 (343)
T ss_pred             --------c---------CcccCCceeEEEcccccEEEeeecCCceeEeec
Confidence                    1         111111233444555588999999999999974

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=3.3e-28  Score=221.68  Aligned_cols=281  Identities=14%  Similarity=0.137  Sum_probs=208.5

Q ss_pred             CCCeEEEEE-cCCCCEEEEEcCCc-EEEEeCCCCcE-EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            7 SYPVFFVSF-NQDNSGFALSTKDG-FKIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         7 ~~~V~~l~f-s~d~~~la~g~~~g-~~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      .++|..++| .|+.++||++++.+ +|+|++.+... ++..|...+..+....++.+++.++       .|+++++|.+.
T Consensus       323 ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~s-------KD~svilWr~~  395 (775)
T KOG0319|consen  323 NDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGS-------KDKSVILWRLN  395 (775)
T ss_pred             chhheeeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccCcEEEEec-------CCceEEEEEec
Confidence            457888877 47888999998876 79999877643 3444444444444223333444443       69999999874


Q ss_pred             CCcE----EEEE-ecCCceEEEEEcCC---eEEEEE-CCeEEEEECCCCce---eeEE----eCCCCCceEEEEeeCCCc
Q 019349           84 TGTA----LREL-NFLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAI---LDTI----DTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        84 ~~~~----~~~~-~~~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~~---~~~~----~~~~~~~~~~~~~~~~~~  147 (342)
                      ++..    +... .+.+.|.+++++..   .++.++ |.++++|++...+.   ...+    ....+...+.+++.+|+.
T Consensus       396 ~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd  475 (775)
T KOG0319|consen  396 NNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND  475 (775)
T ss_pred             CCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC
Confidence            4432    2222 24568888888653   444444 88999999976111   1111    222344567777888888


Q ss_pred             cEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE
Q 019349          148 CFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  227 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v  227 (342)
                      .++|+++  .|.+.+||++.......++.+|+..|.|+.|+|..+.|||+|.|++ ||||.+.+..++++|..+  .+.|
T Consensus       476 kLiAT~S--qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~T-vKIW~is~fSClkT~eGH--~~aV  550 (775)
T KOG0319|consen  476 KLIATGS--QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKT-VKIWSISTFSCLKTFEGH--TSAV  550 (775)
T ss_pred             ceEEecc--cccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCce-EEEEEeccceeeeeecCc--ccee
Confidence            8999988  7999999999999999999999999999999999999999999998 599999999999999643  5679


Q ss_pred             EEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEE
Q 019349          228 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSV  307 (342)
Q Consensus       228 ~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (342)
                      ..+.|-.+++   .|++++.||-|++|++++....++                     .+.|...++++...+..+.+++
T Consensus       551 lra~F~~~~~---qliS~~adGliKlWnikt~eC~~t---------------------lD~H~DrvWaL~~~~~~~~~~t  606 (775)
T KOG0319|consen  551 LRASFIRNGK---QLISAGADGLIKLWNIKTNECEMT---------------------LDAHNDRVWALSVSPLLDMFVT  606 (775)
T ss_pred             EeeeeeeCCc---EEEeccCCCcEEEEeccchhhhhh---------------------hhhccceeEEEeecCccceeEe
Confidence            9999999999   999999999999999998875442                     2333333444444677789999


Q ss_pred             EEeCCcEEEEEEecCC
Q 019349          308 ITYNGYFVEYIFSINN  323 (342)
Q Consensus       308 ~~~dg~v~~~~~~~~~  323 (342)
                      |+.||.+..|.=.+++
T Consensus       607 gg~Dg~i~~wkD~Te~  622 (775)
T KOG0319|consen  607 GGGDGRIIFWKDVTEE  622 (775)
T ss_pred             cCCCeEEEEeecCcHH
Confidence            9999999999754443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2.1e-27  Score=193.11  Aligned_cols=294  Identities=14%  Similarity=0.111  Sum_probs=219.6

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .+.|+.|++.+.||.+|.+|.+++.|.. .||-..+|+.+  |..|.+.+-++++..++..++..++       |+++++
T Consensus         6 l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSA-------D~t~kL   78 (327)
T KOG0643|consen    6 LQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSA-------DQTAKL   78 (327)
T ss_pred             cccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccc-------cceeEE
Confidence            4679999999999999999998888775 99988788776  5556677888888888888876654       999999


Q ss_pred             EECCCCcEEEEEecCCceEEEEEcCCeE--EEEEC------CeEEEEECCC-------CceeeEEeCCCCCceEEEEeeC
Q 019349           80 FNTTTGTALRELNFLTSILAVRLNKKRL--VIVLR------EKTYIYDANT-------LAILDTIDTVPNLKGLCAFSPS  144 (342)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~d------~~i~i~d~~~-------~~~~~~~~~~~~~~~~~~~~~~  144 (342)
                      ||.++|+++..++.+.+|+.+.|+.+..  ++++|      +.|.++|++.       ..++..+.++.  ..+...-+.
T Consensus        79 WDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~--skit~a~Wg  156 (327)
T KOG0643|consen   79 WDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPD--SKITSALWG  156 (327)
T ss_pred             EEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCc--cceeeeeec
Confidence            9999999999999999999999987643  33333      4789999973       34466666554  345555667


Q ss_pred             CCccEEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349          145 LNACFLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       145 ~~~~~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~  223 (342)
                      |-+.+|+++.  .+|.|.+||+++++ .+...+.|...|+.|+++||..+++|+|.|.+. ++||+.+-+.++++..   
T Consensus       157 ~l~~~ii~Gh--e~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dtta-kl~D~~tl~v~Kty~t---  230 (327)
T KOG0643|consen  157 PLGETIIAGH--EDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTA-KLVDVRTLEVLKTYTT---  230 (327)
T ss_pred             ccCCEEEEec--CCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccc-eeeeccceeeEEEeee---
Confidence            7777888877  69999999999985 456667899999999999999999999999885 8999999999998853   


Q ss_pred             ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccc-cccccccccceeeeccCCCccc
Q 019349          224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESV-NEVLDPADHHVLRNAFPAGVKR  302 (342)
Q Consensus       224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  302 (342)
                      ..+|++.+++|-..   +++.|+.-..   -|+.+...     +..++-+.+.-..+ .++-...+|.-..+.+++.|++
T Consensus       231 e~PvN~aaisP~~d---~VilgGGqeA---~dVTTT~~-----r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdG  299 (327)
T KOG0643|consen  231 ERPVNTAAISPLLD---HVILGGGQEA---MDVTTTST-----RAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDG  299 (327)
T ss_pred             cccccceecccccc---eEEecCCcee---eeeeeecc-----cccchhhhHHHHHHHHHhccccccccCcceeEECCCC
Confidence            45699999999877   5665553322   12222111     01111111111111 1222233444455678888888


Q ss_pred             cEEEEEEeCCcEEEEEEecC
Q 019349          303 ASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       303 ~~l~~~~~dg~v~~~~~~~~  322 (342)
                      ....+|++||.|++..++..
T Consensus       300 ksYsSGGEDG~VR~h~Fd~~  319 (327)
T KOG0643|consen  300 KSYSSGGEDGYVRLHHFDSN  319 (327)
T ss_pred             cccccCCCCceEEEEEeccc
Confidence            99999999999999988753

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.96  E-value=1.6e-29  Score=212.25  Aligned_cols=280  Identities=13%  Similarity=0.154  Sum_probs=203.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      ....|+|+.+..  ..+++|..| +++|||.++...++.+..+.-.+++..++.. + +++|     ++|.+|++||..+
T Consensus       196 ~skgVYClQYDD--~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~r-v-iisG-----SSDsTvrvWDv~t  266 (499)
T KOG0281|consen  196 NSKGVYCLQYDD--EKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDER-V-IVSG-----SSDSTVRVWDVNT  266 (499)
T ss_pred             cCCceEEEEecc--hhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccce-E-EEec-----CCCceEEEEeccC
Confidence            456799999863  347888765 5799998887665544443333444445544 3 3444     3699999999999


Q ss_pred             CcEEEEEec-CCceEEEEEcCCeEEEEE-CCeEEEEECCCCce---eeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349           85 GTALRELNF-LTSILAVRLNKKRLVIVL-REKTYIYDANTLAI---LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        85 ~~~~~~~~~-~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      |+++.++-+ ...|..+.|+...++.++ |.+|.+||+....-   .+.+..|...  +..+.++  ..++++++  .|.
T Consensus       267 ge~l~tlihHceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAa--VNvVdfd--~kyIVsAS--gDR  340 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA--VNVVDFD--DKYIVSAS--GDR  340 (499)
T ss_pred             CchhhHHhhhcceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhh--eeeeccc--cceEEEec--CCc
Confidence            999987654 568999999999888888 88999999977532   2233333333  3334443  34888887  589


Q ss_pred             EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcc
Q 019349          160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ  239 (342)
Q Consensus       160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~  239 (342)
                      +|++|++.+++.++++.+|...|.|+.+  .|+++++||.|.+ ||+||+..|.++..+..+  ..-|.++.|.  .+  
T Consensus       341 TikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDnt-IRlwdi~~G~cLRvLeGH--EeLvRciRFd--~k--  411 (499)
T KOG0281|consen  341 TIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEGH--EELVRCIRFD--NK--  411 (499)
T ss_pred             eEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCce-EEEEeccccHHHHHHhch--HHhhhheeec--Cc--
Confidence            9999999999999999999999999987  5799999999987 699999999998777533  4459999995  44  


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          240 DILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       240 ~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                       .+++|.-||+|+|||+.++..++.+            ...-|+-+...|.-.++.+.|.  .-+|++.+.|.+|-+|++
T Consensus       412 -rIVSGaYDGkikvWdl~aaldpra~------------~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdF  476 (499)
T KOG0281|consen  412 -RIVSGAYDGKIKVWDLQAALDPRAP------------ASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDF  476 (499)
T ss_pred             -eeeeccccceEEEEecccccCCccc------------ccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEc
Confidence             6999999999999999887665421            1111222222222222233332  258999999999999999


Q ss_pred             ecCCC
Q 019349          320 SINNC  324 (342)
Q Consensus       320 ~~~~~  324 (342)
                      ....+
T Consensus       477 l~~~~  481 (499)
T KOG0281|consen  477 LNGPP  481 (499)
T ss_pred             CCCCc
Confidence            75443

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.96  E-value=4.8e-29  Score=213.19  Aligned_cols=242  Identities=13%  Similarity=0.166  Sum_probs=199.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCC--cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG--RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .+.|+++|+++.|+++|.++++|+.+|. ++|+.+-.  +.....+...|..+++.+..+.++.++.       |++|+|
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~Sd-------Dg~iki  206 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSD-------DGTIKI  206 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecC-------CCeEEE
Confidence            4679999999999999999999999985 99987543  2223333355666666666677777765       999999


Q ss_pred             EECCCCcEEEEEecCC-ceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349           80 FNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        80 wd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      ||....+....+..++ .|+++.|+|..-.+++   |+.|++||.++++++.++..|.+  .+.++.+++++.+|++++ 
T Consensus       207 Wdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKn--tVl~~~f~~n~N~Llt~s-  283 (464)
T KOG0284|consen  207 WDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKN--TVLAVKFNPNGNWLLTGS-  283 (464)
T ss_pred             EeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccc--eEEEEEEcCCCCeeEEcc-
Confidence            9998888777776655 8999999997655544   78999999999999988866554  678888888899999998 


Q ss_pred             CCccEEEEEEccCCceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349          156 TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  234 (342)
Q Consensus       156 ~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~  234 (342)
                       .|..++++|+++.+.++++++|+..|+++.|+| ...+|.+|+.||.+ ..|.+...+.+.++.. .+...|++|+|+|
T Consensus       284 -kD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsv-vh~~v~~~~p~~~i~~-AHd~~iwsl~~hP  360 (464)
T KOG0284|consen  284 -KDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSV-VHWVVGLEEPLGEIPP-AHDGEIWSLAYHP  360 (464)
T ss_pred             -CCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCce-EEEeccccccccCCCc-ccccceeeeeccc
Confidence             689999999999999999999999999999999 56789999999996 5999986666666643 3456799999999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          235 SMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       235 d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      -|.   +||+|+.|.++++|.-..+-
T Consensus       361 lGh---il~tgsnd~t~rfw~r~rp~  383 (464)
T KOG0284|consen  361 LGH---ILATGSNDRTVRFWTRNRPG  383 (464)
T ss_pred             cce---eEeecCCCcceeeeccCCCC
Confidence            998   99999999999999865543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.1e-25  Score=187.33  Aligned_cols=244  Identities=11%  Similarity=0.161  Sum_probs=190.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .....|+++.|+++|.+|++++++ .+++||..+++........  ++..+.+.+..+.+...+..     .|.+||..+
T Consensus        12 ~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk-----~d~tIryLs   86 (311)
T KOG1446|consen   12 ETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTK-----EDDTIRYLS   86 (311)
T ss_pred             cCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCC-----CCCceEEEE
Confidence            346789999999999999887665 7899999999877665543  67778888888777766653     589999999


Q ss_pred             CCCCcEEEEEecC-CceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           82 TTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        82 ~~~~~~~~~~~~~-~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      +.+++.++-+..+ ..|.+++.+|..  ++.++ |++|++||++..+++.-+.....  .+++  ++|+|.++|++..  
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~--pi~A--fDp~GLifA~~~~--  160 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR--PIAA--FDPEGLIFALANG--  160 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC--ccee--ECCCCcEEEEecC--
Confidence            9999999988754 489999998753  33333 89999999998888777755433  3544  4566778887763  


Q ss_pred             ccEEEEEEccCC--ceeEEEe---cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCcee-EEEEE
Q 019349          158 KGSVLVYNVMEL--HSHCEID---AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST-IFSLS  231 (342)
Q Consensus       158 ~g~i~iwd~~~~--~~~~~~~---~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~-v~~l~  231 (342)
                      .+.|++||++..  .+..++.   +-....+.|.|||||++|+.+...+. +.+.|.-+|..+..+........ -.+.+
T Consensus       161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~-~~~lDAf~G~~~~tfs~~~~~~~~~~~a~  239 (311)
T KOG1446|consen  161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASF-IYLLDAFDGTVKSTFSGYPNAGNLPLSAT  239 (311)
T ss_pred             CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCc-EEEEEccCCcEeeeEeeccCCCCcceeEE
Confidence            458999999865  2455554   33667899999999999999988875 68999999998888865433322 24678


Q ss_pred             EecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          232 FGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      |+||++   ++++|+.||+|++|+++++.+..
T Consensus       240 ftPds~---Fvl~gs~dg~i~vw~~~tg~~v~  268 (311)
T KOG1446|consen  240 FTPDSK---FVLSGSDDGTIHVWNLETGKKVA  268 (311)
T ss_pred             ECCCCc---EEEEecCCCcEEEEEcCCCcEee
Confidence            999999   99999999999999998887654

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=7.4e-28  Score=202.90  Aligned_cols=239  Identities=12%  Similarity=0.177  Sum_probs=189.8

Q ss_pred             eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEE--E-CCeEEEEEC
Q 019349           45 AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIV--L-REKTYIYDA  120 (342)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~--~-d~~i~i~d~  120 (342)
                      |.+-+.++++.+...+++..+       .|++++|||+.+|+...++. +-..|..+++++.+.++.  + |+.|+.||+
T Consensus       150 HlgWVr~vavdP~n~wf~tgs-------~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDL  222 (460)
T KOG0285|consen  150 HLGWVRSVAVDPGNEWFATGS-------ADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDL  222 (460)
T ss_pred             ccceEEEEeeCCCceeEEecC-------CCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEec
Confidence            445667777777666665554       49999999999999999887 556899999988755444  3 789999999


Q ss_pred             CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349          121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ  200 (342)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d  200 (342)
                      +..+.++.+..|  -.++.+++.+|.-..|+++|  .|.+++|||+++...+..+.+|..+|..+.+.|-...++|||.|
T Consensus       223 e~nkvIR~YhGH--lS~V~~L~lhPTldvl~t~g--rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D  298 (460)
T KOG0285|consen  223 EYNKVIRHYHGH--LSGVYCLDLHPTLDVLVTGG--RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHD  298 (460)
T ss_pred             hhhhhHHHhccc--cceeEEEeccccceeEEecC--CcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCC
Confidence            999988887554  45788888888888999998  58999999999999999999999999999999988889999999


Q ss_pred             CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccc
Q 019349          201 GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESV  280 (342)
Q Consensus       201 g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  280 (342)
                      ++ ||+||++.|+-...+.  ++...|.+++.+|...   .+|++|.| .|+-|++..+.-...                
T Consensus       299 ~t-vrlWDl~agkt~~tlt--~hkksvral~lhP~e~---~fASas~d-nik~w~~p~g~f~~n----------------  355 (460)
T KOG0285|consen  299 ST-VRLWDLRAGKTMITLT--HHKKSVRALCLHPKEN---LFASASPD-NIKQWKLPEGEFLQN----------------  355 (460)
T ss_pred             ce-EEEeeeccCceeEeee--cccceeeEEecCCchh---hhhccCCc-cceeccCCccchhhc----------------
Confidence            98 5999999999888774  3355699999999997   78887776 689999876653221                


Q ss_pred             cccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349          281 NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                           ..++..+...+... .++++++|+.+|.+..|++....
T Consensus       356 -----lsgh~~iintl~~n-sD~v~~~G~dng~~~fwdwksg~  392 (460)
T KOG0285|consen  356 -----LSGHNAIINTLSVN-SDGVLVSGGDNGSIMFWDWKSGH  392 (460)
T ss_pred             -----cccccceeeeeeec-cCceEEEcCCceEEEEEecCcCc
Confidence                 12222222333222 23789999999999999987654

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=99.96  E-value=9.6e-28  Score=220.42  Aligned_cols=203  Identities=9%  Similarity=0.069  Sum_probs=168.4

Q ss_pred             ecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC
Q 019349           92 NFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME  168 (342)
Q Consensus        92 ~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~  168 (342)
                      .+.++|.+..|+|+..++.+   |.++++|.+.+...+-.+..|..|...  +.++|.|.++|+++  .|++.++|....
T Consensus       449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwd--V~F~P~GyYFatas--~D~tArLWs~d~  524 (707)
T KOG0263|consen  449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWD--VQFAPRGYYFATAS--HDQTARLWSTDH  524 (707)
T ss_pred             cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceee--EEecCCceEEEecC--CCceeeeeeccc
Confidence            34669999999998655544   789999999999888888877666444  44557789999997  689999999999


Q ss_pred             CceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC
Q 019349          169 LHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS  248 (342)
Q Consensus       169 ~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d  248 (342)
                      .++++.+.+|-+.|.|+.|+|+.+|+||||.|.+ +|+||+.+|..+..|..  |.++|.+|+|||+|+   +||+|++|
T Consensus       525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~t-VRlWDv~~G~~VRiF~G--H~~~V~al~~Sp~Gr---~LaSg~ed  598 (707)
T KOG0263|consen  525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRT-VRLWDVSTGNSVRIFTG--HKGPVTALAFSPCGR---YLASGDED  598 (707)
T ss_pred             CCchhhhcccccccceEEECCcccccccCCCCce-EEEEEcCCCcEEEEecC--CCCceEEEEEcCCCc---eEeecccC
Confidence            9999999999999999999999999999999987 59999999999988854  467899999999999   99999999


Q ss_pred             CcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCC
Q 019349          249 GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC  325 (342)
Q Consensus       249 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~  325 (342)
                      |.|++||+..++.......+                     +-.++.+.|..+++.|++++.|.+|++|++....+.
T Consensus       599 ~~I~iWDl~~~~~v~~l~~H---------------------t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~  654 (707)
T KOG0263|consen  599 GLIKIWDLANGSLVKQLKGH---------------------TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIEL  654 (707)
T ss_pred             CcEEEEEcCCCcchhhhhcc---------------------cCceeEEEEecCCCEEEecCCCCeEEEEEchhhccc
Confidence            99999999988765432211                     112234455667799999999999999998755443

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=9.7e-26  Score=183.77  Aligned_cols=282  Identities=10%  Similarity=0.147  Sum_probs=203.7

Q ss_pred             CCCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEeCCCCc---EEE---EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349            3 NQSSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSSTGR---LCY---ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d-~~~la~g~~~g-~~v~d~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (342)
                      .+.+.+.|..++|+|- |..||+++.+. +|+|+...+.   ...   ..+...+..+++.+.+++++.++       .|
T Consensus        10 ~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aS-------FD   82 (312)
T KOG0645|consen   10 LSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASAS-------FD   82 (312)
T ss_pred             ecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEee-------cc
Confidence            3567789999999998 88899887665 7999987532   221   22556788888888889887765       59


Q ss_pred             CeEEEEECCCC--cEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCC---ceeeEEeCCCCCceEEEEeeCC
Q 019349           75 RRLCLFNTTTG--TALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTL---AILDTIDTVPNLKGLCAFSPSL  145 (342)
Q Consensus        75 ~~i~iwd~~~~--~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~  145 (342)
                      .++.||.-..+  +++..++. .++|++++|++++.++|+   |+.|-||.+...   .+...++.|.+....+..  +|
T Consensus        83 ~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~W--HP  160 (312)
T KOG0645|consen   83 ATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIW--HP  160 (312)
T ss_pred             ceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEE--cC
Confidence            99999986644  46667764 459999999887666655   889999999743   455566666665555544  55


Q ss_pred             CccEEEEeCCCCccEEEEEEccC---CceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc
Q 019349          146 NACFLAVPASTTKGSVLVYNVME---LHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT  222 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~---~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~  222 (342)
                      ...+|++++  .|.+|++|+-..   -++++++.+|.+.|.+++|++.|..|+++++|++ ++||-..+.     + .+.
T Consensus       161 t~dlL~S~S--YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~t-v~Iw~~~~~-----~-~~~  231 (312)
T KOG0645|consen  161 TEDLLFSCS--YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGT-VSIWRLYTD-----L-SGM  231 (312)
T ss_pred             CcceeEEec--cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcc-eEeeeeccC-----c-chh
Confidence            555999988  589999998662   3578999999999999999999999999999998 589997632     2 123


Q ss_pred             CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccc
Q 019349          223 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKR  302 (342)
Q Consensus       223 ~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (342)
                      +..+++.++|. ++    .||+++.|+.|++|........+....-.+....+..+.-...|.|..             .
T Consensus       232 ~sr~~Y~v~W~-~~----~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~-------------~  293 (312)
T KOG0645|consen  232 HSRALYDVPWD-NG----VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKV-------------S  293 (312)
T ss_pred             cccceEeeeec-cc----ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCC-------------C
Confidence            44569999998 55    699999999999998663221111000000001111122234566632             2


Q ss_pred             cEEEEEEeCCcEEEEEEe
Q 019349          303 ASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       303 ~~l~~~~~dg~v~~~~~~  320 (342)
                      ++|++++.||.+++|.+.
T Consensus       294 ~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  294 NRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CceeecCCCceEEEEEec
Confidence            789999999999999873

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.96  E-value=1e-26  Score=216.59  Aligned_cols=242  Identities=16%  Similarity=0.172  Sum_probs=187.5

Q ss_pred             CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc--EEEEE-ecCCceEEEEEcCCeEEEEE---CCeEEEEEC
Q 019349           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT--ALREL-NFLTSILAVRLNKKRLVIVL---REKTYIYDA  120 (342)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~--~~~~~-~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~  120 (342)
                      ..+..+.+.++++.++..+       .++.+++|+..+.+  ...++ .+...|.+++|+++..++++   |.+++|||+
T Consensus       160 ~sv~~~~fs~~g~~l~~~~-------~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~  232 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRALAAAS-------SDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDL  232 (456)
T ss_pred             CceEEEEEcCCCCeEEEcc-------CCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeec
Confidence            5566677777777765554       48999999997776  44444 34558999999998755544   789999999


Q ss_pred             -CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC
Q 019349          121 -NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE  199 (342)
Q Consensus       121 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~  199 (342)
                       ..+..++++..|..  .+.+++++|++..+++++  .|++|+|||+++++++..+++|.++|++++|+++|++|++++.
T Consensus       233 ~~~~~~~~~l~gH~~--~v~~~~f~p~g~~i~Sgs--~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~  308 (456)
T KOG0266|consen  233 KDDGRNLKTLKGHST--YVTSVAFSPDGNLLVSGS--DDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY  308 (456)
T ss_pred             cCCCeEEEEecCCCC--ceEEEEecCCCCEEEEec--CCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC
Confidence             55588899987666  457777778887888777  6999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEEcCCCe--eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccc
Q 019349          200 QGTIIRVFLVSEAT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILP  277 (342)
Q Consensus       200 dg~~irlwd~~~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~  277 (342)
                      ||. |++||+.+++  ++..+........++++.|+|++.   +|++++.|+++++||+..............       
T Consensus       309 d~~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~---~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~-------  377 (456)
T KOG0266|consen  309 DGT-IRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGK---YLLSASLDRTLKLWDLRSGKSVGTYTGHSN-------  377 (456)
T ss_pred             Ccc-EEEEECCCCceeeeecccCCCCCCceeEEEECCCCc---EEEEecCCCeEEEEEccCCcceeeecccCC-------
Confidence            997 5899999998  456665443222689999999999   999999999999999998765442111111       


Q ss_pred             ccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          278 ESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      . ..+..++.          ..+.+..+++++.|+.|++|++..
T Consensus       378 ~-~~~~~~~~----------~~~~~~~i~sg~~d~~v~~~~~~s  410 (456)
T KOG0266|consen  378 L-VRCIFSPT----------LSTGGKLIYSGSEDGSVYVWDSSS  410 (456)
T ss_pred             c-ceeEeccc----------ccCCCCeEEEEeCCceEEEEeCCc
Confidence            0 01222221          133447899999999999998765

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=9.6e-27  Score=208.61  Aligned_cols=241  Identities=11%  Similarity=0.122  Sum_probs=193.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCC--EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      .+-||++..|-+.-+.+++|++|+ +||||.++++.+...+.++  +..+...+.--+++..+       +|-+|++||.
T Consensus        54 ~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsS-------DDm~iKlW~w  126 (794)
T KOG0276|consen   54 SEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSS-------DDMTIKLWDW  126 (794)
T ss_pred             cccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecC-------CccEEEEeec
Confidence            456899999999999999999998 6999999998776555444  44555555445555444       5999999999


Q ss_pred             CCC-cEEEEEec-CCceEEEEEcCC---eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           83 TTG-TALRELNF-LTSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        83 ~~~-~~~~~~~~-~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      +.+ .+.++++. ...|.+++|+|+   .++.++ |++|++|.+.+..+..+++.|......+.+-+.+|..+|++++  
T Consensus       127 e~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsga--  204 (794)
T KOG0276|consen  127 ENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGA--  204 (794)
T ss_pred             cCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecC--
Confidence            765 34455554 348999999875   455555 9999999999999999998877766666676777888999887  


Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  236 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (342)
                      .|.+|+|||.++..|++++++|.+.|+++.|+|.-..++|||+||++ |||+..+-++...+.-+  -..++|++-.+.+
T Consensus       205 DD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTv-riWhs~Ty~lE~tLn~g--leRvW~I~~~k~~  281 (794)
T KOG0276|consen  205 DDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTV-RIWNSKTYKLEKTLNYG--LERVWCIAAHKGD  281 (794)
T ss_pred             CCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccE-EEecCcceehhhhhhcC--CceEEEEeecCCC
Confidence            69999999999999999999999999999999999999999999995 99999988777766544  4569999988888


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCCCC
Q 019349          237 QFQDILVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       237 ~~~~~l~~~s~dg~i~vwd~~~~~~~  262 (342)
                      .   .++.|.+.|.|. ..+....+.
T Consensus       282 ~---~i~vG~Deg~i~-v~lgreeP~  303 (794)
T KOG0276|consen  282 G---KIAVGFDEGSVT-VKLGREEPA  303 (794)
T ss_pred             C---eEEEeccCCcEE-EEccCCCCc
Confidence            7   788888877764 455555443

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.96  E-value=1.2e-27  Score=210.07  Aligned_cols=291  Identities=13%  Similarity=0.100  Sum_probs=203.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC-------cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG-------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      .+...|.++++.|.|..|++|+-|. +++||.+..       +.+.--+.+.+..+.+...++-++++++       ...
T Consensus       165 hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg-------~aq  237 (641)
T KOG0772|consen  165 HGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG-------SAQ  237 (641)
T ss_pred             CCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec-------Ccc
Confidence            4556799999999999999998775 799998654       2222223477788888888888888877       457


Q ss_pred             EEEEECCCCcEEEEEec-------------CCceEEEEEcCC---eEEEEE-CCeEEEEECCCCcee-eEEeCC---CCC
Q 019349           77 LCLFNTTTGTALRELNF-------------LTSILAVRLNKK---RLVIVL-REKTYIYDANTLAIL-DTIDTV---PNL  135 (342)
Q Consensus        77 i~iwd~~~~~~~~~~~~-------------~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~~~-~~~~~~---~~~  135 (342)
                      .+|+|-...+.......             ...+++.+|+|.   .++.++ |++++|||+.+.+.. ..+.+.   ...
T Consensus       238 akl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~R  317 (641)
T KOG0772|consen  238 AKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKR  317 (641)
T ss_pred             eeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcc
Confidence            78888543333322221             225677788775   344455 899999999876433 333322   222


Q ss_pred             ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc--e-eEEEecccC--CeeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 019349          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH--S-HCEIDAHQA--PLAAIVLSSNGMYIATASEQGTIIRVFLVS  210 (342)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~--~-~~~~~~h~~--~v~~i~~s~dg~~lat~s~dg~~irlwd~~  210 (342)
                      ..+...++++++..+|++.  .||.|++|+..+..  + ...-.+|..  .|+||+||+||++|++-|.|+++ |+||++
T Consensus       318 v~~tsC~~nrdg~~iAagc--~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tL-KvWDLr  394 (641)
T KOG0772|consen  318 VPVTSCAWNRDGKLIAAGC--LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTL-KVWDLR  394 (641)
T ss_pred             cCceeeecCCCcchhhhcc--cCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCce-eeeecc
Confidence            3455667788888888766  69999999975432  2 233458887  99999999999999999999985 999998


Q ss_pred             CCee-EEEeccCcCceeEEEEEEecCCCcccEEEEEeC------CCcEEEEecCCCCCCCCCCCcccccccccccccccc
Q 019349          211 EATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEV  283 (342)
Q Consensus       211 ~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (342)
                      +.++ +..+..-...-.-+.++||||.+   +|++|+.      .|++.+||-.+-....+...+       -...+.++
T Consensus       395 q~kkpL~~~tgL~t~~~~tdc~FSPd~k---li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~-------~aSvv~~~  464 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPFPGTDCCFSPDDK---LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS-------TASVVRCL  464 (641)
T ss_pred             ccccchhhhcCCCccCCCCccccCCCce---EEEecccccCCCCCceEEEEeccceeeEEEecCC-------CceEEEEe
Confidence            7653 33332111222356789999999   8888865      367999997765543321111       11234678


Q ss_pred             ccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCCeeeeE
Q 019349          284 LDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWT  330 (342)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~  330 (342)
                      |+|.-              |+|+++++||.+++| +++.++++++|.
T Consensus       465 WhpkL--------------NQi~~gsgdG~~~vy-Ydp~~S~RGak~  496 (641)
T KOG0772|consen  465 WHPKL--------------NQIFAGSGDGTAHVY-YDPNESIRGAKL  496 (641)
T ss_pred             ecchh--------------hheeeecCCCceEEE-ECccccccchhh
Confidence            88854              899999999999999 899998888763

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.96  E-value=1.4e-26  Score=211.39  Aligned_cols=282  Identities=13%  Similarity=0.131  Sum_probs=225.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      ..|...|++++||.|...+++|..+.+++|+..+.+.+++...+-+-...+.+..+++++..       ..+.+.++|+.
T Consensus       370 ~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~-------k~Gel~vfdla  442 (888)
T KOG0306|consen  370 GGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGT-------KNGELQVFDLA  442 (888)
T ss_pred             ccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEec-------cCCceEEEEee
Confidence            46778899999999999999999999999999999999888777666667777766665543       48999999999


Q ss_pred             CCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCC-----CceeeEEeC-----CCCCceEEEEeeCCCccE
Q 019349           84 TGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANT-----LAILDTIDT-----VPNLKGLCAFSPSLNACF  149 (342)
Q Consensus        84 ~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~-----~~~~~~~~~-----~~~~~~~~~~~~~~~~~~  149 (342)
                      ....+.+++ |.+.|.+++..|++  ++.++ |++|++||+.-     +...+.+..     -.-+..+.|++.+||+.+
T Consensus       443 S~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~  522 (888)
T KOG0306|consen  443 SASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKL  522 (888)
T ss_pred             hhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcE
Confidence            888777765 56689999998774  44555 89999999842     111111111     111346889999999999


Q ss_pred             EEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349          150 LAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  229 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~  229 (342)
                      ||.+-  -|.+|+||-+.+.+...++.+|+-||.||.+|||+++++|||.|.+ +++|-+.-|.+-+.+-.+  ...|.+
T Consensus       523 LaVsL--LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKn-VKiWGLdFGDCHKS~fAH--dDSvm~  597 (888)
T KOG0306|consen  523 LAVSL--LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKN-VKIWGLDFGDCHKSFFAH--DDSVMS  597 (888)
T ss_pred             EEEEe--ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCc-eEEeccccchhhhhhhcc--cCceeE
Confidence            99887  5899999999999999999999999999999999999999999988 599999999988877543  556999


Q ss_pred             EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349          230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  309 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (342)
                      +.|-|+..   ++.+++.|+.|+-||-+.......           ++.+...+|-.+-          .+.+.+++++|
T Consensus       598 V~F~P~~~---~FFt~gKD~kvKqWDg~kFe~iq~-----------L~~H~~ev~cLav----------~~~G~~vvs~s  653 (888)
T KOG0306|consen  598 VQFLPKTH---LFFTCGKDGKVKQWDGEKFEEIQK-----------LDGHHSEVWCLAV----------SPNGSFVVSSS  653 (888)
T ss_pred             EEEcccce---eEEEecCcceEEeechhhhhhhee-----------eccchheeeeeEE----------cCCCCeEEecc
Confidence            99999988   899999999999999776655432           2333344554433          56668999999


Q ss_pred             eCCcEEEEEEec
Q 019349          310 YNGYFVEYIFSI  321 (342)
Q Consensus       310 ~dg~v~~~~~~~  321 (342)
                      .|..+++|..+.
T Consensus       654 hD~sIRlwE~td  665 (888)
T KOG0306|consen  654 HDKSIRLWERTD  665 (888)
T ss_pred             CCceeEeeeccC
Confidence            999999998654

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=99.96  E-value=2.3e-25  Score=196.24  Aligned_cols=286  Identities=15%  Similarity=0.207  Sum_probs=220.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE----eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER----AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      +.|..+++-..|+|.|-++|+|...| +||||....+.+...    -.+++.-+.|.+++..++.+|.|+..   -+.+.
T Consensus        56 tEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrer---fg~~F  132 (603)
T KOG0318|consen   56 TEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRER---FGHVF  132 (603)
T ss_pred             ccccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccc---eeEEE
Confidence            45778899999999999999998887 799998765433322    23788889999999999999887431   34566


Q ss_pred             EEECCCCcEEEEEecCC-ceEEEEEcCCe---EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           79 LFNTTTGTALRELNFLT-SILAVRLNKKR---LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        79 iwd~~~~~~~~~~~~~~-~v~~i~~~~~~---~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      +||  +|..+.++..++ .|.++.|-|.+   ++.++ |+.|.+|+=...+...+++.|.+  -+.++-++||+.++|++
T Consensus       133 ~~D--SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk--FV~~VRysPDG~~Fat~  208 (603)
T KOG0318|consen  133 LWD--SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSK--FVNCVRYSPDGSRFATA  208 (603)
T ss_pred             Eec--CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeeccccccc--ceeeEEECCCCCeEEEe
Confidence            676  667778887655 78888886654   33344 78999999776666666655544  67788888999999999


Q ss_pred             CCCCccEEEEEEccCCceeEEEe---cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc-eeEEE
Q 019349          154 ASTTKGSVLVYNVMELHSHCEID---AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP-STIFS  229 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~---~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~-~~v~~  229 (342)
                      |  .||+|.+||-.+++.+..+.   +|++.|.+++|+||++.++|+|.|.+ +||||+.+.+++.++..+..- .....
T Consensus       209 g--sDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt-~KIWdVs~~slv~t~~~~~~v~dqqvG  285 (603)
T KOG0318|consen  209 G--SDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKT-IKIWDVSTNSLVSTWPMGSTVEDQQVG  285 (603)
T ss_pred             c--CCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCce-EEEEEeeccceEEEeecCCchhceEEE
Confidence            9  58999999999999999998   89999999999999999999999987 699999999999998655331 12334


Q ss_pred             EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349          230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  309 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (342)
                      +-|- . .   .|++-|.+|+|.+++...++.++..                     .+|...++++...+++.+|++++
T Consensus       286 ~lWq-k-d---~lItVSl~G~in~ln~~d~~~~~~i---------------------~GHnK~ITaLtv~~d~~~i~Sgs  339 (603)
T KOG0318|consen  286 CLWQ-K-D---HLITVSLSGTINYLNPSDPSVLKVI---------------------SGHNKSITALTVSPDGKTIYSGS  339 (603)
T ss_pred             EEEe-C-C---eEEEEEcCcEEEEecccCCChhhee---------------------cccccceeEEEEcCCCCEEEeec
Confidence            4565 3 3   6999999999999999887754421                     12222233444456668999999


Q ss_pred             eCCcEEEEEEecCCCC
Q 019349          310 YNGYFVEYIFSINNCC  325 (342)
Q Consensus       310 ~dg~v~~~~~~~~~~~  325 (342)
                      .||.|..|+....+..
T Consensus       340 yDG~I~~W~~~~g~~~  355 (603)
T KOG0318|consen  340 YDGHINSWDSGSGTSD  355 (603)
T ss_pred             cCceEEEEecCCcccc
Confidence            9999999988765544

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.95  E-value=7e-28  Score=210.10  Aligned_cols=281  Identities=12%  Similarity=0.120  Sum_probs=212.7

Q ss_pred             CCCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEeCCC-CcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349            3 NQSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSST-GRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~-d~~~la~g~~~g-~~v~d~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      .+.|...|.++.|.| .+.+|++|+.|+ ++|||+-. ++++..  .|..++..+.+...+..++.++       .|+.|
T Consensus       210 ~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~s-------fD~~l  282 (503)
T KOG0282|consen  210 LSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSAS-------FDRFL  282 (503)
T ss_pred             ccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeee-------cceee
Confidence            467888999999999 778888888887 59999765 555544  3444555555555555555444       59999


Q ss_pred             EEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           78 CLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      ++||+++|+++..+.....+.++.++|+.  +++++  |++|+-||+++++.++++..+-.  .+..+.+-+++..++++
T Consensus       283 KlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg--~i~~i~F~~~g~rFiss  360 (503)
T KOG0282|consen  283 KLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLG--AILDITFVDEGRRFISS  360 (503)
T ss_pred             eeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhh--heeeeEEccCCceEeee
Confidence            99999999999999999999999998864  44444  89999999999999888865444  46667777888888888


Q ss_pred             CCCCccEEEEEEccCCceeEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee---EEEeccCcCceeEEE
Q 019349          154 ASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK---SYSFRRGTYPSTIFS  229 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~---~~~~~~~~~~~~v~~  229 (342)
                      +  .+++++||+.+.+-++..+. .+.....||..+|++.+++.-|.|..+ -+|.+...-.   .+.|.++.-.+--..
T Consensus       361 S--Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i-~ifs~~~~~r~nkkK~feGh~vaGys~~  437 (503)
T KOG0282|consen  361 S--DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYI-AIFSTVPPFRLNKKKRFEGHSVAGYSCQ  437 (503)
T ss_pred             c--cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceE-EEEecccccccCHhhhhcceeccCceee
Confidence            7  68999999998887665543 234567889999999999999999874 5888754322   233433332333567


Q ss_pred             EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349          230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  309 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (342)
                      +.|||||.   +|++|+.||.+.+||-++.+.....+       .+-..-+...|+|...             ..+++++
T Consensus       438 v~fSpDG~---~l~SGdsdG~v~~wdwkt~kl~~~lk-------ah~~~ci~v~wHP~e~-------------Skvat~~  494 (503)
T KOG0282|consen  438 VDFSPDGR---TLCSGDSDGKVNFWDWKTTKLVSKLK-------AHDQPCIGVDWHPVEP-------------SKVATCG  494 (503)
T ss_pred             EEEcCCCC---eEEeecCCccEEEeechhhhhhhccc-------cCCcceEEEEecCCCc-------------ceeEecc
Confidence            89999999   99999999999999998877654322       2212234567888652             6799999


Q ss_pred             eCCcEEEEE
Q 019349          310 YNGYFVEYI  318 (342)
Q Consensus       310 ~dg~v~~~~  318 (342)
                      -||.|++|+
T Consensus       495 w~G~Ikiwd  503 (503)
T KOG0282|consen  495 WDGLIKIWD  503 (503)
T ss_pred             cCceeEecC
Confidence            999999994

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.95  E-value=6.5e-25  Score=190.91  Aligned_cols=234  Identities=17%  Similarity=0.255  Sum_probs=187.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .+...+..+.|+|++++|++++.++ +++||+.+++......  ...+..+.+..+...++..+       .++.|++||
T Consensus        49 ~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-------~~~~i~~~~  121 (289)
T cd00200          49 GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS-------RDKTIKVWD  121 (289)
T ss_pred             cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCCCEEEEec-------CCCeEEEEE
Confidence            4567888999999999999888776 6999998865544433  33566666666544444433       378999999


Q ss_pred             CCCCcEEEEEe-cCCceEEEEEcCCe-EEE-EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           82 TTTGTALRELN-FLTSILAVRLNKKR-LVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        82 ~~~~~~~~~~~-~~~~v~~i~~~~~~-~~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      +.+++.+..+. +...+.++.++++. +++ +. ++.+++||+++++.+..+..+.  ..+.++.+++++..+++++  .
T Consensus       122 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~--~  197 (289)
T cd00200         122 VETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHT--GEVNSVAFSPDGEKLLSSS--S  197 (289)
T ss_pred             CCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCc--cccceEEECCCcCEEEEec--C
Confidence            99888887776 45589999999843 333 33 7899999999888887776443  3566777788887888877  4


Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCC
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (342)
                      +|.|++||+.+++.+..+..|..++.+++|+|++.++++++.||. +++||+.+++.+..+..  +...+.+++|+|++.
T Consensus       198 ~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-i~i~~~~~~~~~~~~~~--~~~~i~~~~~~~~~~  274 (289)
T cd00200         198 DGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGT-IRVWDLRTGECVQTLSG--HTNSVTSLAWSPDGK  274 (289)
T ss_pred             CCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCc-EEEEEcCCceeEEEccc--cCCcEEEEEECCCCC
Confidence            899999999999888888889999999999999999999988998 58999999888888763  345699999999988


Q ss_pred             cccEEEEEeCCCcEEEEe
Q 019349          238 FQDILVATSSSGSLHVFS  255 (342)
Q Consensus       238 ~~~~l~~~s~dg~i~vwd  255 (342)
                         +|++++.||.|++|+
T Consensus       275 ---~l~~~~~d~~i~iw~  289 (289)
T cd00200         275 ---RLASGSADGTIRIWD  289 (289)
T ss_pred             ---EEEEecCCCeEEecC
Confidence               999999999999996

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.6e-26  Score=196.84  Aligned_cols=283  Identities=14%  Similarity=0.136  Sum_probs=209.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCC---cEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG---RLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      +.+..+|..+.||++|++||+|+.|.. .+|.+...   ++..+  .+..++..+.|.++.++++.++.       +..+
T Consensus       221 ~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~-------~e~~  293 (519)
T KOG0293|consen  221 QDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF-------DEVL  293 (519)
T ss_pred             hhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc-------hHhe
Confidence            467889999999999999999998874 77875433   33333  34567888899999999988875       6779


Q ss_pred             EEEECCCCcEEEEEecC--CceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349           78 CLFNTTTGTALRELNFL--TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  152 (342)
                      .+||+.+|.....+...  ..+.+.+|.||.+-++.   |+++..||+.. ..+...+... ...+..++..+|+.++..
T Consensus       294 ~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr-~~~v~dlait~Dgk~vl~  371 (519)
T KOG0293|consen  294 SLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVR-DPKVHDLAITYDGKYVLL  371 (519)
T ss_pred             eeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccc-cceeEEEEEcCCCcEEEE
Confidence            99999999998887655  58899999998654433   88999999864 3343443222 235777888888888888


Q ss_pred             eCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349          153 PASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  232 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f  232 (342)
                      .+  .|..|++++.++......+.. ..+|+++++|.||+++++.=.+.. +++||++..+.+..+..+....-+..-+|
T Consensus       372 v~--~d~~i~l~~~e~~~dr~lise-~~~its~~iS~d~k~~LvnL~~qe-i~LWDl~e~~lv~kY~Ghkq~~fiIrSCF  447 (519)
T KOG0293|consen  372 VT--VDKKIRLYNREARVDRGLISE-EQPITSFSISKDGKLALVNLQDQE-IHLWDLEENKLVRKYFGHKQGHFIIRSCF  447 (519)
T ss_pred             Ee--cccceeeechhhhhhhccccc-cCceeEEEEcCCCcEEEEEcccCe-eEEeecchhhHHHHhhcccccceEEEecc
Confidence            77  689999999887665544443 578999999999999999888877 58999998777777654332223444567


Q ss_pred             ec-CCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeC
Q 019349          233 GQ-SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN  311 (342)
Q Consensus       233 s~-d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  311 (342)
                      -- +..   ++|+||+|+.|+||+...++....       +.++....-...|+|...             .+++++|.|
T Consensus       448 gg~~~~---fiaSGSED~kvyIWhr~sgkll~~-------LsGHs~~vNcVswNP~~p-------------~m~ASasDD  504 (519)
T KOG0293|consen  448 GGGNDK---FIASGSEDSKVYIWHRISGKLLAV-------LSGHSKTVNCVSWNPADP-------------EMFASASDD  504 (519)
T ss_pred             CCCCcc---eEEecCCCceEEEEEccCCceeEe-------ecCCcceeeEEecCCCCH-------------HHhhccCCC
Confidence            53 345   999999999999999888776442       222221112236888652             578999999


Q ss_pred             CcEEEEEEecC
Q 019349          312 GYFVEYIFSIN  322 (342)
Q Consensus       312 g~v~~~~~~~~  322 (342)
                      |+|+||..++.
T Consensus       505 gtIRIWg~~~~  515 (519)
T KOG0293|consen  505 GTIRIWGPSDN  515 (519)
T ss_pred             CeEEEecCCcc
Confidence            99999987654

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.95  E-value=2.8e-27  Score=198.86  Aligned_cols=235  Identities=11%  Similarity=0.207  Sum_probs=185.7

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      ..+|.+.|.|+.|..  +.+++|+.|. ++|||+++++.+...-.+..+++...++.++++.++-       |+++.+||
T Consensus       233 L~GHtGSVLCLqyd~--rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~ng~mvtcSk-------DrsiaVWd  303 (499)
T KOG0281|consen  233 LTGHTGSVLCLQYDE--RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSNGYMVTCSK-------DRSIAVWD  303 (499)
T ss_pred             hhcCCCcEEeeeccc--eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeCCEEEEecC-------CceeEEEe
Confidence            467899999999975  4788898776 6999999998876655555666777788888888874       99999999


Q ss_pred             CCCCcEEEE----EecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           82 TTTGTALRE----LNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        82 ~~~~~~~~~----~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      +.....+..    ..+...|..+.|+...++.|+ |.+|++|++.+...++++..|  ..++.|+...  +.++++++  
T Consensus       304 m~sps~it~rrVLvGHrAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gH--kRGIAClQYr--~rlvVSGS--  377 (499)
T KOG0281|consen  304 MASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGH--KRGIACLQYR--DRLVVSGS--  377 (499)
T ss_pred             ccCchHHHHHHHHhhhhhheeeeccccceEEEecCCceEEEEeccceeeehhhhcc--cccceehhcc--CeEEEecC--
Confidence            976653321    124568999999988888777 889999999999999998654  4578777765  34555544  


Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe-------ccCcCceeEEE
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF-------RRGTYPSTIFS  229 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~-------~~~~~~~~v~~  229 (342)
                      .|.+|++||+..|.+++.+++|+.-|.||.|+  .+.+++|+-||+ ||+||+..+......       ....+.+.|..
T Consensus       378 SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGk-ikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFr  454 (499)
T KOG0281|consen  378 SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGK-IKVWDLQAALDPRAPASTLCLRTLVEHSGRVFR  454 (499)
T ss_pred             CCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccccce-EEEEecccccCCcccccchHHHhhhhccceeEE
Confidence            68999999999999999999999999999995  578999999998 699999877532111       01123457999


Q ss_pred             EEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      +.|.  ..   .+++++.|.+|-|||...+.
T Consensus       455 LQFD--~f---qIvsssHddtILiWdFl~~~  480 (499)
T KOG0281|consen  455 LQFD--EF---QIISSSHDDTILIWDFLNGP  480 (499)
T ss_pred             Eeec--ce---EEEeccCCCeEEEEEcCCCC
Confidence            9885  44   79999999999999986654

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.95  E-value=6.9e-26  Score=206.60  Aligned_cols=289  Identities=13%  Similarity=0.150  Sum_probs=208.4

Q ss_pred             eEEE-EEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCC---CCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349           10 VFFV-SFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYS---SSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (342)
Q Consensus        10 V~~l-~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~d~~i~iwd~~~~   85 (342)
                      +..+ .....+..|++..+..+.+||.++.++......-.-.+.+|.+-   .+++++++.       ...+|+++..+.
T Consensus       284 ~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATN-------s~~lr~y~~~~~  356 (775)
T KOG0319|consen  284 IDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATN-------SPELRLYTLPTS  356 (775)
T ss_pred             hhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeC-------CCceEEEecCCC
Confidence            4444 34445666777778889999988887665443333333444443   378888875       689999999988


Q ss_pred             cEEEEEecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCC----ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349           86 TALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTL----AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (342)
Q Consensus        86 ~~~~~~~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  158 (342)
                      .+..-..|...|.++....++  ++.++ |+++++|.+++.    -++.....|.+..+.++++.. ...++++++  .|
T Consensus       357 ~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~-~asffvsvS--~D  433 (775)
T KOG0319|consen  357 YCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKL-GASFFVSVS--QD  433 (775)
T ss_pred             ceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeeccc-CccEEEEec--CC
Confidence            887444566688998844444  33444 899999988443    234445667776666666433 345677776  69


Q ss_pred             cEEEEEEccCCce-----e----EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349          159 GSVLVYNVMELHS-----H----CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  229 (342)
Q Consensus       159 g~i~iwd~~~~~~-----~----~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~  229 (342)
                      +++++|++...+.     +    .+..+|...|+|++++|+.+++||||.|.+. +||+++.+..+..+..|  ...|.+
T Consensus       434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkta-KiW~le~~~l~~vLsGH--~RGvw~  510 (775)
T KOG0319|consen  434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTA-KIWDLEQLRLLGVLSGH--TRGVWC  510 (775)
T ss_pred             ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccce-eeecccCceEEEEeeCC--ccceEE
Confidence            9999999976221     1    1234799999999999999999999999884 99999999999988644  345999


Q ss_pred             EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349          230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  309 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (342)
                      +.|+|..+   .+|++|.|.||+||.+.+.+..++                     .++|+-.+..+.|-..+.+|++++
T Consensus       511 V~Fs~~dq---~laT~SgD~TvKIW~is~fSClkT---------------------~eGH~~aVlra~F~~~~~qliS~~  566 (775)
T KOG0319|consen  511 VSFSKNDQ---LLATCSGDKTVKIWSISTFSCLKT---------------------FEGHTSAVLRASFIRNGKQLISAG  566 (775)
T ss_pred             EEeccccc---eeEeccCCceEEEEEeccceeeee---------------------ecCccceeEeeeeeeCCcEEEecc
Confidence            99999999   999999999999999988765443                     233343444455556678999999


Q ss_pred             eCCcEEEEEEecCCCC-------eeeeEEEeee
Q 019349          310 YNGYFVEYIFSINNCC-------ESTWTLDREF  335 (342)
Q Consensus       310 ~dg~v~~~~~~~~~~~-------~~~~~~~~~~  335 (342)
                      +||.+++|+++..+|.       +.+|.+...+
T Consensus       567 adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~  599 (775)
T KOG0319|consen  567 ADGLIKLWNIKTNECEMTLDAHNDRVWALSVSP  599 (775)
T ss_pred             CCCcEEEEeccchhhhhhhhhccceeEEEeecC
Confidence            9999999999877653       4455554443

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=1.8e-25  Score=208.43  Aligned_cols=275  Identities=15%  Similarity=0.177  Sum_probs=211.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE---EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE---RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      +...+.+..|.  ..++.+++.+. +++|+..++..+..   .|.+.+..+++....++++..+.       |.++++||
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~-------D~t~rvWd  277 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGST-------DKTERVWD  277 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEec-------CCcEEeEe
Confidence            46678888988  44577777766 58999999977655   45567777777665667666654       99999999


Q ss_pred             CCCCcEEEEEe-cCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349           82 TTTGTALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        82 ~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      ..+|+|+..+. +.+.|.++...+..++.++ |.+|++|++.+++.++.+..|..  .+.++..+  +.++++++  .||
T Consensus       278 ~~sg~C~~~l~gh~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~--~V~~v~~~--~~~lvsgs--~d~  351 (537)
T KOG0274|consen  278 CSTGECTHSLQGHTSSVRCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTG--PVNCVQLD--EPLLVSGS--YDG  351 (537)
T ss_pred             cCCCcEEEEecCCCceEEEEEccCceEeeccCCceEEEEeccCcceEEEeccccc--cEEEEEec--CCEEEEEe--cCc
Confidence            99999999988 4568888888887777755 99999999999999999876544  45566655  34777766  589


Q ss_pred             EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC-eeEEEeccCcCceeEEEEEEecCCCc
Q 019349          160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-TKSYSFRRGTYPSTIFSLSFGQSMQF  238 (342)
Q Consensus       160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (342)
                      +|++||..+++++.++.+|...|.++.+.+. ..+++||.|++ ||+||+.++ +++..+..  +.+-+.++.+  .++ 
T Consensus       352 ~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~-IkvWdl~~~~~c~~tl~~--h~~~v~~l~~--~~~-  424 (537)
T KOG0274|consen  352 TVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTT-IKVWDLRTKRKCIHTLQG--HTSLVSSLLL--RDN-  424 (537)
T ss_pred             eEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccc-eEeecCCchhhhhhhhcC--Cccccccccc--ccc-
Confidence            9999999999999999999999999988776 89999999987 699999999 88888753  3444655554  355 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349          239 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       239 ~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                        +|++++.|++|++||.+.....+..+.+          ....++          .+..+  ...+++.+.||.+++|+
T Consensus       425 --~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~----------~~~~v~----------~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  425 --FLVSSSADGTIKLWDAEEGECLRTLEGR----------HVGGVS----------ALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             --eeEeccccccEEEeecccCceeeeeccC----------CcccEE----------EeecC--cceEEEEecCCeeEEEe
Confidence              8999999999999999888765532211          000011          11111  36799999999999999


Q ss_pred             EecCCCCe
Q 019349          319 FSINNCCE  326 (342)
Q Consensus       319 ~~~~~~~~  326 (342)
                      +......+
T Consensus       481 l~~~~~~~  488 (537)
T KOG0274|consen  481 LRSGTLIR  488 (537)
T ss_pred             cccCchhh
Confidence            87766544

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=1.3e-26  Score=186.96  Aligned_cols=281  Identities=12%  Similarity=0.106  Sum_probs=208.5

Q ss_pred             CCCCCeEEEEEcC---CCCEEEEEcCCcE-EEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            5 SSSYPVFFVSFNQ---DNSGFALSTKDGF-KIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         5 ~~~~~V~~l~fs~---d~~~la~g~~~g~-~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      .+..||..++|||   +|-+|++++.|+- .+-+-++|..+  ++.|.+.+-...+.  .+-...+++     +.|=+-+
T Consensus        12 ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~--~na~~aasa-----aadftak   84 (334)
T KOG0278|consen   12 GHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLN--KNATRAASA-----AADFTAK   84 (334)
T ss_pred             CCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecC--chhhhhhhh-----cccchhh
Confidence            5778999999985   8888999999985 67777888665  44444444333332  222222222     2578899


Q ss_pred             EEECCCCcEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCc-eeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           79 LFNTTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        79 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      +||.-+|..+.++++..-|++++|+.+...+.+   +.-++|||++..+ ...++..+.....-+-++. .+. .+.++.
T Consensus        85 vw~a~tgdelhsf~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~-eD~-~iLSSa  162 (334)
T KOG0278|consen   85 VWDAVTGDELHSFEHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCH-EDK-CILSSA  162 (334)
T ss_pred             hhhhhhhhhhhhhhhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEec-cCc-eEEeec
Confidence            999999999999999999999999988655544   5578999998764 3455555554433333443 344 444444


Q ss_pred             CCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349          155 STTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  234 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~  234 (342)
                        .|++|++||.++++.++++.- ..+|+++.+++||++|.++...  -|++||..+-.+++.+.   -+++|.+.+++|
T Consensus       163 --dd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~gs--sV~Fwdaksf~~lKs~k---~P~nV~SASL~P  234 (334)
T KOG0278|consen  163 --DDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYGS--SVKFWDAKSFGLLKSYK---MPCNVESASLHP  234 (334)
T ss_pred             --cCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecCc--eeEEeccccccceeecc---CccccccccccC
Confidence              689999999999999988864 6789999999999998887543  36799999988888774   367899999999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcE
Q 019349          235 SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYF  314 (342)
Q Consensus       235 d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v  314 (342)
                      +..   ++++|++|..++.||..++.+...      +..++              +-.+..+.|.|++...++||.||+|
T Consensus       235 ~k~---~fVaGged~~~~kfDy~TgeEi~~------~nkgh--------------~gpVhcVrFSPdGE~yAsGSEDGTi  291 (334)
T KOG0278|consen  235 KKE---FFVAGGEDFKVYKFDYNTGEEIGS------YNKGH--------------FGPVHCVRFSPDGELYASGSEDGTI  291 (334)
T ss_pred             CCc---eEEecCcceEEEEEeccCCceeee------cccCC--------------CCceEEEEECCCCceeeccCCCceE
Confidence            998   999999999999999999887442      11111              1222344566777899999999999


Q ss_pred             EEEEEecCCCC
Q 019349          315 VEYIFSINNCC  325 (342)
Q Consensus       315 ~~~~~~~~~~~  325 (342)
                      ++|+..+.+.-
T Consensus       292 rlWQt~~~~~~  302 (334)
T KOG0278|consen  292 RLWQTTPGKTY  302 (334)
T ss_pred             EEEEecCCCch
Confidence            99999887643

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.1e-25  Score=204.43  Aligned_cols=241  Identities=15%  Similarity=0.153  Sum_probs=187.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCC--EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .|++||+.++|+|++.++++|++|. ++||+..+.+.++++-.+-  +..+.+.+.--.++.++       +|.+|+|||
T Consensus        49 eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSAS-------DDQTIrIWN  121 (1202)
T KOG0292|consen   49 EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSAS-------DDQTIRIWN  121 (1202)
T ss_pred             ccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccceeEEeeccCCCceEEEcc-------CCCeEEEEe
Confidence            5899999999999999999999987 6999999999888765443  33444444444444443       599999999


Q ss_pred             CCCCcEEEEEecC-CceEEEEEcCCe--EEEEE-CCeEEEEECCCCce---------------------------eeEEe
Q 019349           82 TTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAI---------------------------LDTID  130 (342)
Q Consensus        82 ~~~~~~~~~~~~~-~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~---------------------------~~~~~  130 (342)
                      ..+++++..++.+ ..|.+..|+|..  ++.++ |.+|++||+...+.                           +-..-
T Consensus       122 wqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~V  201 (1202)
T KOG0292|consen  122 WQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHV  201 (1202)
T ss_pred             ccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeee
Confidence            9999999998754 589999999843  33344 99999999963211                           00111


Q ss_pred             CCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc--eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349          131 TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH--SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL  208 (342)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd  208 (342)
                      ...+..++...+++|....+++++  .|..|++|.+...+  .+.+..+|.+.|+++-|+|.-+++++.|+|++ |||||
T Consensus       202 LEGHDRGVNwaAfhpTlpliVSG~--DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDks-irVwD  278 (1202)
T KOG0292|consen  202 LEGHDRGVNWAAFHPTLPLIVSGA--DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKS-IRVWD  278 (1202)
T ss_pred             ecccccccceEEecCCcceEEecC--CcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCcc-EEEEe
Confidence            123345667777888777887776  69999999987665  45677899999999999999999999999997 69999


Q ss_pred             cCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          209 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +...+.+.+|++.  ....+.++-+|..+    |.+++.|+-+-||.++...+
T Consensus       279 m~kRt~v~tfrre--ndRFW~laahP~lN----LfAAgHDsGm~VFkleRErp  325 (1202)
T KOG0292|consen  279 MTKRTSVQTFRRE--NDRFWILAAHPELN----LFAAGHDSGMIVFKLERERP  325 (1202)
T ss_pred             cccccceeeeecc--CCeEEEEEecCCcc----eeeeecCCceEEEEEcccCc
Confidence            9999999999765  45688999999998    55667777888998876543

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.8e-25  Score=207.44  Aligned_cols=244  Identities=14%  Similarity=0.188  Sum_probs=192.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ++....|..++|+|..-.+.++--.| +++||..=+.++  |..|.+++..+.+.+...++  ++||     +|-+|++|
T Consensus         6 EskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplF--VSGG-----DDykIkVW   78 (1202)
T KOG0292|consen    6 ESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLF--VSGG-----DDYKIKVW   78 (1202)
T ss_pred             hcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeE--EecC-----CccEEEEE
Confidence            34567899999999999999998777 599998777665  55677888877776554443  3333     58999999


Q ss_pred             ECCCCcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           81 NTTTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        81 d~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      +.++.+++.++.. -..|+.+.|++....+.+   |.+|+|||..+.+++..+..|.+  .+.|..++|....+++++  
T Consensus        79 nYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnH--YVMcAqFhptEDlIVSaS--  154 (1202)
T KOG0292|consen   79 NYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNH--YVMCAQFHPTEDLIVSAS--  154 (1202)
T ss_pred             ecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCce--EEEeeccCCccceEEEec--
Confidence            9999999988754 458999999999866654   66999999999999999987766  456666777666888887  


Q ss_pred             CccEEEEEEccCCc-----------------------------eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349          157 TKGSVLVYNVMELH-----------------------------SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF  207 (342)
Q Consensus       157 ~~g~i~iwd~~~~~-----------------------------~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw  207 (342)
                      -|.+|+|||+...+                             ..+.+++|...|+-++|+|.-.++++|++|.. ||+|
T Consensus       155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRq-VKlW  233 (1202)
T KOG0292|consen  155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQ-VKLW  233 (1202)
T ss_pred             ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcce-eeEE
Confidence            68999999973110                             11356799999999999999999999999975 6999


Q ss_pred             EcCCCee--EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCC
Q 019349          208 LVSEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR  264 (342)
Q Consensus       208 d~~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~  264 (342)
                      .+..-+.  +.+.+.  |..+|.++-|+|...   ++++.|+|++|+|||+........
T Consensus       234 rmnetKaWEvDtcrg--H~nnVssvlfhp~q~---lIlSnsEDksirVwDm~kRt~v~t  287 (1202)
T KOG0292|consen  234 RMNETKAWEVDTCRG--HYNNVSSVLFHPHQD---LILSNSEDKSIRVWDMTKRTSVQT  287 (1202)
T ss_pred             Eeccccceeehhhhc--ccCCcceEEecCccc---eeEecCCCccEEEEecccccceee
Confidence            9865432  233332  345699999999887   999999999999999987765543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=9.6e-27  Score=194.10  Aligned_cols=254  Identities=15%  Similarity=0.180  Sum_probs=198.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      +..+-+.|..|||||++|++|+-||+ .|||..+|++........                        .|+        
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA------------------------qd~--------  258 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA------------------------QDN--------  258 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh------------------------hcc--------
Confidence            45567889999999999999999997 999999887643322100                        011        


Q ss_pred             CCcEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349           84 TGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (342)
Q Consensus        84 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~  160 (342)
                            .+-...+|.++.|+++.-++++   ||+|++|.+.++++++.++. .+..++++++++.|+..+.+++  .|.+
T Consensus       259 ------fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdr-AHtkGvt~l~FSrD~SqiLS~s--fD~t  329 (508)
T KOG0275|consen  259 ------FMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDR-AHTKGVTCLSFSRDNSQILSAS--FDQT  329 (508)
T ss_pred             ------eeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhh-hhccCeeEEEEccCcchhhccc--ccce
Confidence                  0112357888899888777665   88999999999999988863 3456899999999999998888  5899


Q ss_pred             EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCccc
Q 019349          161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  240 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~  240 (342)
                      ++|.-+.+|+++..+.+|.+-|+...|++||+.++++|.||+ +|+|+.++++++.+|+......+|+++-.-|.+.  +
T Consensus       330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgt-vkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnp--e  406 (508)
T KOG0275|consen  330 VRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGT-VKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNP--E  406 (508)
T ss_pred             EEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCcc-EEEecCcchhhhhhccCCCCcccceeEEEcCCCC--c
Confidence            999999999999999999999999999999999999999998 5999999999999998766666788888888776  4


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCCCCCccccccc-c-ccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349          241 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS-I-LPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       241 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                      .++++...++|+|-++..... ++      +.++ . -++-+.+.-              .|++..+.++++|+.+|.|.
T Consensus       407 h~iVCNrsntv~imn~qGQvV-rs------fsSGkREgGdFi~~~l--------------SpkGewiYcigED~vlYCF~  465 (508)
T KOG0275|consen  407 HFIVCNRSNTVYIMNMQGQVV-RS------FSSGKREGGDFINAIL--------------SPKGEWIYCIGEDGVLYCFS  465 (508)
T ss_pred             eEEEEcCCCeEEEEeccceEE-ee------eccCCccCCceEEEEe--------------cCCCcEEEEEccCcEEEEEE
Confidence            899999999999999875432 11      0000 0 001112222              45568999999999999998


Q ss_pred             EecCC
Q 019349          319 FSINN  323 (342)
Q Consensus       319 ~~~~~  323 (342)
                      .-..+
T Consensus       466 ~~sG~  470 (508)
T KOG0275|consen  466 VLSGK  470 (508)
T ss_pred             eecCc
Confidence            76543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.4e-25  Score=178.19  Aligned_cols=237  Identities=15%  Similarity=0.123  Sum_probs=185.5

Q ss_pred             eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC-ceEEEEEcCCeEEEEE---CCeEEEEEC
Q 019349           45 AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDA  120 (342)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~---d~~i~i~d~  120 (342)
                      +.+.+..+.+.-++++.+.+|.       |++|++||...|.++.++..++ +|.+++.+.+.--+++   |..+.+||+
T Consensus        16 ~qgaV~avryN~dGnY~ltcGs-------drtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen   16 AQGAVRAVRYNVDGNYCLTCGS-------DRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             cccceEEEEEccCCCEEEEcCC-------CceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            4477788888888899888875       9999999999999999997655 8999988766544444   789999999


Q ss_pred             CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC--CceeEEEecccCCeeEEEECCCCCEEEEEe
Q 019349          121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME--LHSHCEIDAHQAPLAAIVLSSNGMYIATAS  198 (342)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~--~~~~~~~~~h~~~v~~i~~s~dg~~lat~s  198 (342)
                      ++++.++.+..|..  .+.++.++.+...+++++  -|.++++||-++  .++++.+......|.+|.++  +..|++||
T Consensus        89 ~TGkv~Rr~rgH~a--qVNtV~fNeesSVv~Sgs--fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLA--QVNTVRFNEESSVVASGS--FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             ccCeeeeecccccc--eeeEEEecCcceEEEecc--ccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence            99999999988766  455667777777777776  689999999865  46888888888999999985  57899999


Q ss_pred             CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccc
Q 019349          199 EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPE  278 (342)
Q Consensus       199 ~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  278 (342)
                      .||+ +|.||++.|+......    ..+|++++|++|++   .+++++.|+++++-|-++++..+.          +.+.
T Consensus       163 ~DGt-vRtydiR~G~l~sDy~----g~pit~vs~s~d~n---c~La~~l~stlrLlDk~tGklL~s----------YkGh  224 (307)
T KOG0316|consen  163 VDGT-VRTYDIRKGTLSSDYF----GHPITSVSFSKDGN---CSLASSLDSTLRLLDKETGKLLKS----------YKGH  224 (307)
T ss_pred             cCCc-EEEEEeecceeehhhc----CCcceeEEecCCCC---EEEEeeccceeeecccchhHHHHH----------hccc
Confidence            9999 4999999998765542    34699999999999   899999999999999877765332          2111


Q ss_pred             cccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          279 SVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      .-.         .....+.+......+++|++||.|+.|++-.
T Consensus       225 kn~---------eykldc~l~qsdthV~sgSEDG~Vy~wdLvd  258 (307)
T KOG0316|consen  225 KNM---------EYKLDCCLNQSDTHVFSGSEDGKVYFWDLVD  258 (307)
T ss_pred             ccc---------eeeeeeeecccceeEEeccCCceEEEEEecc
Confidence            100         0001112233336899999999999999854

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.3e-25  Score=207.90  Aligned_cols=240  Identities=13%  Similarity=0.164  Sum_probs=182.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCC-----------------------------c-EE------------
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG-----------------------------R-LC------------   41 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~-----------------------------~-~~------------   41 (342)
                      .+.+.|.++.||+||+|||+|++|++ |||.+...                             . .+            
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            68899999999999999999999996 99975440                             0 00            


Q ss_pred             ------------E------EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEc
Q 019349           42 ------------Y------ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLN  103 (342)
Q Consensus        42 ------------~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~  103 (342)
                                  +      ....+.-.++++.++.+.+++.+.      .|+|||||++...+|+..+.|...|++|+|+
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSS------MDKTVRLWh~~~~~CL~~F~HndfVTcVaFn  418 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSS------MDKTVRLWHPGRKECLKVFSHNDFVTCVAFN  418 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCCeeEecc------ccccEEeecCCCcceeeEEecCCeeEEEEec
Confidence                        0      000122234555566555555543      5999999999999999999999999999998


Q ss_pred             CC--eEEE-EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe---
Q 019349          104 KK--RLVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID---  176 (342)
Q Consensus       104 ~~--~~~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~---  176 (342)
                      |.  +.++ .+ |++++||++.+.+.+...+.+   .-+.++++.|+|.+.+.+.  .+|..++|+....+....+.   
T Consensus       419 PvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~---~lITAvcy~PdGk~avIGt--~~G~C~fY~t~~lk~~~~~~I~~  493 (712)
T KOG0283|consen  419 PVDDRYFISGSLDGKVRLWSISDKKVVDWNDLR---DLITAVCYSPDGKGAVIGT--FNGYCRFYDTEGLKLVSDFHIRL  493 (712)
T ss_pred             ccCCCcEeecccccceEEeecCcCeeEeehhhh---hhheeEEeccCCceEEEEE--eccEEEEEEccCCeEEEeeeEee
Confidence            73  3344 33 999999999988777655443   4577888888888888877  58999999998887665443   


Q ss_pred             ------cccCCeeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC
Q 019349          177 ------AHQAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG  249 (342)
Q Consensus       177 ------~h~~~v~~i~~s~dg-~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg  249 (342)
                            .|. .|+.+.|.|.. ..|+..|.|.+ |||+|.++.+++..|+.......-....|+.||+   +|+++++|.
T Consensus       494 ~~~Kk~~~~-rITG~Q~~p~~~~~vLVTSnDSr-IRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk---~IVs~seDs  568 (712)
T KOG0283|consen  494 HNKKKKQGK-RITGLQFFPGDPDEVLVTSNDSR-IRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGK---HIVSASEDS  568 (712)
T ss_pred             ccCccccCc-eeeeeEecCCCCCeEEEecCCCc-eEEEeccchhhhhhhcccccCCcceeeeEccCCC---EEEEeecCc
Confidence                  233 79999998743 34666677877 6999999888888886544333456789999999   999999999


Q ss_pred             cEEEEecCCCC
Q 019349          250 SLHVFSPGFAI  260 (342)
Q Consensus       250 ~i~vwd~~~~~  260 (342)
                      .|+||+++...
T Consensus       569 ~VYiW~~~~~~  579 (712)
T KOG0283|consen  569 WVYIWKNDSFN  579 (712)
T ss_pred             eEEEEeCCCCc
Confidence            99999985443

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.95  E-value=2.9e-25  Score=183.41  Aligned_cols=248  Identities=13%  Similarity=0.150  Sum_probs=186.0

Q ss_pred             EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC-cEEEEEe-cCCceEEEEEcCCeEEE--EE-CCeEE
Q 019349           42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-TALRELN-FLTSILAVRLNKKRLVI--VL-REKTY  116 (342)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~i~~~~~~~~~--~~-d~~i~  116 (342)
                      ...+.+.+..+.+.+++.+++..|       .|+.|.+|+.... +....++ +.+.|..+.+.++.-.+  ++ |.+++
T Consensus        43 l~gh~geI~~~~F~P~gs~~aSgG-------~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~  115 (338)
T KOG0265|consen   43 LPGHKGEIYTIKFHPDGSCFASGG-------SDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR  115 (338)
T ss_pred             cCCCcceEEEEEECCCCCeEeecC-------CcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence            444567777788888666665544       5999999996432 2333444 34589999998775444  33 88999


Q ss_pred             EEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEE
Q 019349          117 IYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIAT  196 (342)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat  196 (342)
                      .||.++++.++.++.+...  +.++.+..-+..++++++ .||++++||+++.+.+++++. +.+++++.|..++..+.+
T Consensus       116 ~wD~~tG~~~rk~k~h~~~--vNs~~p~rrg~~lv~Sgs-dD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~s  191 (338)
T KOG0265|consen  116 GWDAETGKRIRKHKGHTSF--VNSLDPSRRGPQLVCSGS-DDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVIS  191 (338)
T ss_pred             EEecccceeeehhccccce--eeecCccccCCeEEEecC-CCceEEEEeecccchhhcccc-ceeEEEEEecccccceee
Confidence            9999999999998877664  444556666777877777 699999999999888877753 567999999999999999


Q ss_pred             EeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCC-CCCcccccccc
Q 019349          197 ASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR-GGRTSSILGSI  275 (342)
Q Consensus       197 ~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~-~~~~~~~~~~~  275 (342)
                      |+-|+. |++||++....++.+..+  ..+|+.|..+|+|.   ++.+-+.|+++++||++.-.+..+ .....+..-.+
T Consensus       192 ggIdn~-ikvWd~r~~d~~~~lsGh--~DtIt~lsls~~gs---~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf  265 (338)
T KOG0265|consen  192 GGIDND-IKVWDLRKNDGLYTLSGH--ADTITGLSLSRYGS---FLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF  265 (338)
T ss_pred             ccccCc-eeeeccccCcceEEeecc--cCceeeEEeccCCC---ccccccccceEEEEEecccCCCCceEEEeecchhhh
Confidence            999987 699999999999988644  55799999999999   999999999999999986544332 11111111111


Q ss_pred             ccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          276 LPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      .-....+.|+|..              ..+-+++.|..+|+|+..
T Consensus       266 eknlL~cswsp~~--------------~~i~ags~dr~vyvwd~~  296 (338)
T KOG0265|consen  266 EKNLLKCSWSPNG--------------TKITAGSADRFVYVWDTT  296 (338)
T ss_pred             hhhcceeeccCCC--------------CccccccccceEEEeecc
Confidence            1122457788866              678889999999999754

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=5.3e-26  Score=194.90  Aligned_cols=235  Identities=14%  Similarity=0.174  Sum_probs=187.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      .+..++|+++.|.+++.++.+++.|+ .++||++..++..++..+  .+..+.+......  ++++     +.|++|++|
T Consensus       216 aGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~--vVsg-----s~DRtiK~W  288 (459)
T KOG0288|consen  216 AGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSR--VVSG-----SADRTIKLW  288 (459)
T ss_pred             hccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccc--eeec-----cccchhhhh
Confidence            35667899999999999876666655 799999998776554444  4444444333333  4454     369999999


Q ss_pred             ECCCCcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349           81 NTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      |+.+..|..++-..+.+.+|..++..++... |++|++||.++..+..++..+.   .+.++..+.++..+.+++  .|.
T Consensus       289 Dl~k~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg---~vtSl~ls~~g~~lLsss--RDd  363 (459)
T KOG0288|consen  289 DLQKAYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG---RVTSLDLSMDGLELLSSS--RDD  363 (459)
T ss_pred             hhhhhheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc---ceeeEeeccCCeEEeeec--CCC
Confidence            9999999999888888888888744333333 8899999999999888887654   477788888888888877  589


Q ss_pred             EEEEEEccCCceeEEEecc----cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC
Q 019349          160 SVLVYNVMELHSHCEIDAH----QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  235 (342)
Q Consensus       160 ~i~iwd~~~~~~~~~~~~h----~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d  235 (342)
                      ++.+.|+++.+...++.+.    ....+.+.|||++.|+|+||.||.+ +||++.++++...+.....++.|++++|+|.
T Consensus       364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv-~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~s  442 (459)
T KOG0288|consen  364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSV-YIWSVFTGKLEKVLSLSTSNAAITSLSWNPS  442 (459)
T ss_pred             ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcE-EEEEccCceEEEEeccCCCCcceEEEEEcCC
Confidence            9999999998877776532    2458899999999999999999995 7999999998888765544446999999999


Q ss_pred             CCcccEEEEEeCCCcEEEE
Q 019349          236 MQFQDILVATSSSGSLHVF  254 (342)
Q Consensus       236 ~~~~~~l~~~s~dg~i~vw  254 (342)
                      |.   .|++++.++.+.+|
T Consensus       443 G~---~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  443 GS---GLLSADKQKAVTLW  458 (459)
T ss_pred             Cc---hhhcccCCcceEec
Confidence            99   89999999999999

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.94  E-value=1.7e-24  Score=183.07  Aligned_cols=281  Identities=12%  Similarity=0.105  Sum_probs=211.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      ...|..+|++++.+|+.+++|+|+.|-. .+|++.++...++...+  .+..+.+.+++.++++.+       -++.|+|
T Consensus        60 F~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGd-------msG~v~v  132 (399)
T KOG0296|consen   60 FDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGD-------MSGKVLV  132 (399)
T ss_pred             hhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecC-------CCccEEE
Confidence            3568899999999999999999988876 99999999887776554  455555555666665554       4899999


Q ss_pred             EECCCCcEEEEEe-cCCceEEEEEcCCeEEE-EE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349           80 FNTTTGTALRELN-FLTSILAVRLNKKRLVI-VL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        80 wd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~-~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      |+..++.....+. .-..+.-+.|+|...++ +.  |+.+.+|.+.+....+.+..+..+  ..+=.+.|+++.++++. 
T Consensus       133 ~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~--ct~G~f~pdGKr~~tgy-  209 (399)
T KOG0296|consen  133 FKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP--CTCGEFIPDGKRILTGY-  209 (399)
T ss_pred             EEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCC--cccccccCCCceEEEEe-
Confidence            9999999888876 34578889999975444 33  899999999998777777765444  33334456688888776 


Q ss_pred             CCccEEEEEEccCCceeEEEec-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc-C-----cCce---
Q 019349          156 TTKGSVLVYNVMELHSHCEIDA-HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-G-----TYPS---  225 (342)
Q Consensus       156 ~~~g~i~iwd~~~~~~~~~~~~-h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~-~-----~~~~---  225 (342)
                       .||+|++||..+++++..+.. -..+..++.++.++..+.+|+.++.. ++-...+|+.+..... .     .+..   
T Consensus       210 -~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~-~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e  287 (399)
T KOG0296|consen  210 -DDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVA-CGVNNGSGKVVNCNNGTVPELKPSQEELDE  287 (399)
T ss_pred             -cCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccE-EEEccccceEEEecCCCCccccccchhhhh
Confidence             699999999999999988863 34568899999999999999999975 6888888888776652 1     1111   


Q ss_pred             eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEE
Q 019349          226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  305 (342)
Q Consensus       226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      .|-++.|+..-.   +.|+|+-||+|-|||+..........        +....+...|.+ .              .+|
T Consensus       288 sve~~~~ss~lp---L~A~G~vdG~i~iyD~a~~~~R~~c~--------he~~V~~l~w~~-t--------------~~l  341 (399)
T KOG0296|consen  288 SVESIPSSSKLP---LAACGSVDGTIAIYDLAASTLRHICE--------HEDGVTKLKWLN-T--------------DYL  341 (399)
T ss_pred             hhhhcccccccc---hhhcccccceEEEEecccchhheecc--------CCCceEEEEEcC-c--------------chh
Confidence            255566666667   89999999999999998765433211        111123446665 3              689


Q ss_pred             EEEEeCCcEEEEEEec
Q 019349          306 SVITYNGYFVEYIFSI  321 (342)
Q Consensus       306 ~~~~~dg~v~~~~~~~  321 (342)
                      +++|.||.|++|+...
T Consensus       342 ~t~c~~g~v~~wDaRt  357 (399)
T KOG0296|consen  342 LTACANGKVRQWDART  357 (399)
T ss_pred             eeeccCceEEeeeccc
Confidence            9999999999997544

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.94  E-value=5.4e-26  Score=183.35  Aligned_cols=197  Identities=17%  Similarity=0.260  Sum_probs=164.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCc---EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGR---LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      .+..-|.+++|+.|.++|++|+.+.+ ||||++.-+   ..+..+.+++..+.|+...+.++..+       .|++||+|
T Consensus        98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSa-------dd~tVRLW  170 (334)
T KOG0278|consen   98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSA-------DDKTVRLW  170 (334)
T ss_pred             hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeec-------cCCceEEE
Confidence            35567999999999999999988775 999987653   23555668888888888777766553       49999999


Q ss_pred             ECCCCcEEEEEecCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349           81 NTTTGTALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (342)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  158 (342)
                      |.++++.+.+++++++|.++.+++++.++..  .+.|.+||..+..+++.++.+.+   +.+.+.+|+...++++|  .|
T Consensus       171 D~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~n---V~SASL~P~k~~fVaGg--ed  245 (334)
T KOG0278|consen  171 DHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCN---VESASLHPKKEFFVAGG--ED  245 (334)
T ss_pred             EeccCcEEEEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccc---cccccccCCCceEEecC--cc
Confidence            9999999999999999999999887655543  66999999999999988876544   56666677776777666  79


Q ss_pred             cEEEEEEccCCceeEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee
Q 019349          159 GSVLVYNVMELHSHCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK  214 (342)
Q Consensus       159 g~i~iwd~~~~~~~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~  214 (342)
                      ..++.||..+++.+..+ ++|-+||.|+.|+|||...|+||+||+ ||||.+..++.
T Consensus       246 ~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT-irlWQt~~~~~  301 (334)
T KOG0278|consen  246 FKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT-IRLWQTTPGKT  301 (334)
T ss_pred             eEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCce-EEEEEecCCCc
Confidence            99999999999988775 899999999999999999999999998 58999976654

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.5e-25  Score=192.09  Aligned_cols=238  Identities=13%  Similarity=0.190  Sum_probs=178.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEc-CCcEEEEeCCCCcEEEEEee---CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALST-KDGFKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~-~~g~~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .++..+|..+.||||.++|++++ ++.+++||..+|........   -.+..++|.+++..+++ |+      .|+++..
T Consensus       266 vgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~-Gs------~dr~i~~  338 (519)
T KOG0293|consen  266 VGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVT-GS------PDRTIIM  338 (519)
T ss_pred             ecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEe-cC------CCCcEEE
Confidence            46788999999999999976554 45579999999976543322   34556677777766443 32      5899999


Q ss_pred             EECCCCcEEEEEec--CCceEEEEEcCCeEEE--E-ECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           80 FNTTTGTALRELNF--LTSILAVRLNKKRLVI--V-LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        80 wd~~~~~~~~~~~~--~~~v~~i~~~~~~~~~--~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      ||+... .+...+.  ...|.++++.+|+-.+  . .|..|++|+.++......+..   ...+..++.+.++.++.+.-
T Consensus       339 wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise---~~~its~~iS~d~k~~LvnL  414 (519)
T KOG0293|consen  339 WDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISE---EQPITSFSISKDGKLALVNL  414 (519)
T ss_pred             ecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccc---cCceeEEEEcCCCcEEEEEc
Confidence            998643 3443332  2368889987765333  2 388999999987644433332   23577788888888877766


Q ss_pred             CCCccEEEEEEccCCceeEEEecccCC--eeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEE
Q 019349          155 STTKGSVLVYNVMELHSHCEIDAHQAP--LAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  231 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~~~h~~~--v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~  231 (342)
                        .+..|++||++..+.++.+.+|+..  |-.-+|-. +..++|+||+|+. |++|+..+|+++.++..+  ...|++++
T Consensus       415 --~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~k-vyIWhr~sgkll~~LsGH--s~~vNcVs  489 (519)
T KOG0293|consen  415 --QDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSK-VYIWHRISGKLLAVLSGH--SKTVNCVS  489 (519)
T ss_pred             --ccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCce-EEEEEccCCceeEeecCC--cceeeEEe
Confidence              5789999999988888888898864  22224544 5589999999998 589999999999999654  45699999


Q ss_pred             EecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          232 FGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      |+|...  .++|++|+||+|+||.....
T Consensus       490 wNP~~p--~m~ASasDDgtIRIWg~~~~  515 (519)
T KOG0293|consen  490 WNPADP--EMFASASDDGTIRIWGPSDN  515 (519)
T ss_pred             cCCCCH--HHhhccCCCCeEEEecCCcc
Confidence            999886  49999999999999987655

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.94  E-value=1.2e-23  Score=209.46  Aligned_cols=234  Identities=18%  Similarity=0.202  Sum_probs=178.9

Q ss_pred             CCCeEEEEEcCC-CCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcC-CCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            7 SYPVFFVSFNQD-NSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLY-SSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         7 ~~~V~~l~fs~d-~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      ...|.+++|+|. +.+|++|+.++ +++||+.+++.+...  |.+.+..+.+.+ +++.++.++       .|++|++||
T Consensus       532 ~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs-------~Dg~v~iWd  604 (793)
T PLN00181        532 RSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGS-------DDGSVKLWS  604 (793)
T ss_pred             cCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEc-------CCCEEEEEE
Confidence            357889999874 67899888877 599999988766544  445666677764 345555554       489999999


Q ss_pred             CCCCcEEEEEecCCceEEEEEcC---CeEEEEE-CCeEEEEECCCCc-eeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           82 TTTGTALRELNFLTSILAVRLNK---KRLVIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~~---~~~~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      +.++..+..+.....+.++.|++   ..+++++ |+.|++||+++.+ .+..+..|..  .+.++.+. ++..+++++  
T Consensus       605 ~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~--~V~~v~f~-~~~~lvs~s--  679 (793)
T PLN00181        605 INQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSK--TVSYVRFV-DSSTLVSSS--  679 (793)
T ss_pred             CCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCC--CEEEEEEe-CCCEEEEEE--
Confidence            99999998888777899999853   2444444 8899999998765 3455544443  45555554 456787777  


Q ss_pred             CccEEEEEEccCC------ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc----------
Q 019349          157 TKGSVLVYNVMEL------HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR----------  220 (342)
Q Consensus       157 ~~g~i~iwd~~~~------~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~----------  220 (342)
                      .|++|++||+...      +++..+.+|...+++++|+|++.+||+|+.||++ ++|+......+..+..          
T Consensus       680 ~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v-~iw~~~~~~~~~s~~~~~~~~~~~~~  758 (793)
T PLN00181        680 TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEV-FVYHKAFPMPVLSYKFKTIDPVSGLE  758 (793)
T ss_pred             CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEE-EEEECCCCCceEEEecccCCcccccc
Confidence            6899999999743      5678899999999999999999999999999985 7999876654433211          


Q ss_pred             -CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349          221 -GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       221 -~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                       ..+...|.+++|+|++.   +|++|+.||+|+||++
T Consensus       759 ~~~~~~~V~~v~ws~~~~---~lva~~~dG~I~i~~~  792 (793)
T PLN00181        759 VDDASQFISSVCWRGQSS---TLVAANSTGNIKILEM  792 (793)
T ss_pred             cCCCCcEEEEEEEcCCCC---eEEEecCCCcEEEEec
Confidence             11223599999999999   9999999999999986

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=2.9e-24  Score=185.34  Aligned_cols=282  Identities=14%  Similarity=0.167  Sum_probs=210.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~   85 (342)
                      ...|.++...|....+++|+.| ...+||..+.+++....++...+....+......+..+     +.|..|++|.....
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~a-----Sad~~i~vws~~~~  293 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITA-----SADEIIRVWSVPLS  293 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeec-----CCcceEEeeccccc
Confidence            3578888888887788899888 68999999888776666666666665555544333333     25899999998766


Q ss_pred             cEEEEE-ecCCceEEEEEcCC--eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEE
Q 019349           86 TALREL-NFLTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (342)
Q Consensus        86 ~~~~~~-~~~~~v~~i~~~~~--~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i  161 (342)
                      .+.... .+..+|+.+..++.  +++.++ |+...+.|++++..+.......+.....+..++||+..++++.  .||.|
T Consensus       294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt--~d~~v  371 (506)
T KOG0289|consen  294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGT--PDGVV  371 (506)
T ss_pred             cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccC--CCceE
Confidence            555443 45668999888765  555555 7799999999998887765545556788888999998877766  69999


Q ss_pred             EEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349          162 LVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI  241 (342)
Q Consensus       162 ~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~  241 (342)
                      +|||+.++..+..|.+|.++|..|+|+.+|-+||++++|+. |++||++.-+..+++..... .++.++.|.+.|+   +
T Consensus       372 kiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~-V~lwDLRKl~n~kt~~l~~~-~~v~s~~fD~SGt---~  446 (506)
T KOG0289|consen  372 KIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGS-VKLWDLRKLKNFKTIQLDEK-KEVNSLSFDQSGT---Y  446 (506)
T ss_pred             EEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCe-EEEEEehhhcccceeecccc-ccceeEEEcCCCC---e
Confidence            99999999999999999999999999999999999999997 58999998887777754332 2599999999999   9


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          242 LVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       242 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                      |+.++.|=+|++++-.+..                   +.++-....+.-....+.|+....+++++|.|..+++|.+
T Consensus       447 L~~~g~~l~Vy~~~k~~k~-------------------W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  447 LGIAGSDLQVYICKKKTKS-------------------WTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             EEeecceeEEEEEeccccc-------------------ceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            9999877666666522211                   0001111111112234455655678999999999998865

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=7.7e-26  Score=193.92  Aligned_cols=277  Identities=12%  Similarity=0.129  Sum_probs=207.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcE--EEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--CYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      .-|.+.|..+.|-++...|++|+.|. +++|+....+.  .-.+  ..+++..+.+..+...+ ++++      .|+.++
T Consensus       172 d~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~-iAas------~d~~~r  244 (459)
T KOG0288|consen  172 DAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHV-IAAS------NDKNLR  244 (459)
T ss_pred             hccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceE-Eeec------CCCcee
Confidence            35778999999999988899887776 59999877652  2222  23456555555444444 3443      589999


Q ss_pred             EEECCCCcEEEEEec-CCceEEEEEcCCeE-EEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           79 LFNTTTGTALRELNF-LTSILAVRLNKKRL-VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        79 iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~-~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      +||+...+...++.. ...|+++.|..... ++..  |.+|++||+....+.+++-.......+++-      ...+++|
T Consensus       245 ~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~------~~~~~Sg  318 (459)
T KOG0288|consen  245 LWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS------ISDVISG  318 (459)
T ss_pred             eeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhheeccccccccccceEec------ceeeeec
Confidence            999999988877764 45899999877665 3333  789999999998777776443333334331      2455667


Q ss_pred             CCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC--ceeEEEEEE
Q 019349          155 STTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY--PSTIFSLSF  232 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~--~~~v~~l~f  232 (342)
                      . .|+.|+.||.++..+....+.|. .|+++..+++|..|.+++.|.+ ++++|+++.+....+.....  .+.++.+.|
T Consensus       319 H-~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdt-l~viDlRt~eI~~~~sA~g~k~asDwtrvvf  395 (459)
T KOG0288|consen  319 H-FDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDT-LKVIDLRTKEIRQTFSAEGFKCASDWTRVVF  395 (459)
T ss_pred             c-cccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCc-eeeeecccccEEEEeeccccccccccceeEE
Confidence            6 79999999999999999998876 8999999999999999999987 58999999887777754321  223888999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCC
Q 019349          233 GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG  312 (342)
Q Consensus       233 s~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  312 (342)
                      ||++.   |+|+||.||.|+||++.+++.++....+..     .+......|+|.+              ..+++++.++
T Consensus       396 Spd~~---YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s-----~~aI~s~~W~~sG--------------~~Llsadk~~  453 (459)
T KOG0288|consen  396 SPDGS---YVAAGSADGSVYIWSVFTGKLEKVLSLSTS-----NAAITSLSWNPSG--------------SGLLSADKQK  453 (459)
T ss_pred             CCCCc---eeeeccCCCcEEEEEccCceEEEEeccCCC-----CcceEEEEEcCCC--------------chhhcccCCc
Confidence            99999   999999999999999999876553221111     1134556888877              6799999999


Q ss_pred             cEEEEE
Q 019349          313 YFVEYI  318 (342)
Q Consensus       313 ~v~~~~  318 (342)
                      .+.+|.
T Consensus       454 ~v~lW~  459 (459)
T KOG0288|consen  454 AVTLWT  459 (459)
T ss_pred             ceEecC
Confidence            999883

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1.6e-24  Score=175.17  Aligned_cols=277  Identities=14%  Similarity=0.185  Sum_probs=187.8

Q ss_pred             CCeEEEEEcCC-CCEEEEEc--CCc------EEEEeCC-CCcEEE--EEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349            8 YPVFFVSFNQD-NSGFALST--KDG------FKIFDSS-TGRLCY--ERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         8 ~~V~~l~fs~d-~~~la~g~--~~g------~~v~d~~-~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (342)
                      -.=+++.|||= .++||++.  .-|      +.|-++. ...+..  ... .....-+.+..+...++++..|      |
T Consensus         9 f~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~G------D   82 (311)
T KOG0277|consen    9 FHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASG------D   82 (311)
T ss_pred             cccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEec------C
Confidence            34578999992 23344432  212      4555664 222221  111 2445556666665444444433      9


Q ss_pred             CeEEEEECCC-CcEEEEEe-cCCceEEEEEcCC---eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349           75 RRLCLFNTTT-GTALRELN-FLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        75 ~~i~iwd~~~-~~~~~~~~-~~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
                      ++++|||+.. ..++..++ +..+|.++.+++.   .++..+ |++|++|+...++.+.++..+........++|+- ..
T Consensus        83 GSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~-~n  161 (311)
T KOG0277|consen   83 GSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHI-PN  161 (311)
T ss_pred             ceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCC-CC
Confidence            9999999643 34666654 4458999999753   333334 9999999999999999987755543334444432 34


Q ss_pred             EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCC-eeEEEeccCcCcee
Q 019349          149 FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEA-TKSYSFRRGTYPST  226 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~-~~~~~~~~~~~~~~  226 (342)
                      .+++++  .||++++||++.......+++|...|.|+.|+. +.+.|+||+.|+. ||.||+++- ..+.++..  +.-.
T Consensus       162 lfas~S--gd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~-vr~wDir~~r~pl~eL~g--h~~A  236 (311)
T KOG0277|consen  162 LFASAS--GDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNL-VRGWDIRNLRTPLFELNG--HGLA  236 (311)
T ss_pred             eEEEcc--CCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCce-EEEEehhhccccceeecC--CceE
Confidence            666666  589999999987655556999999999999997 7789999999986 699999875 45666643  3456


Q ss_pred             EEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC-CCCCCCccccccccccccccccccccccceeeeccCCCccccEE
Q 019349          227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN-QRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  305 (342)
Q Consensus       227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      |..+.|||-..  ++||++|-|-|++|||.+.+.. ..+..+++.|.-+       .-|++-.             ..++
T Consensus       237 VRkvk~Sph~~--~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g-------~Dws~~~-------------~~~v  294 (311)
T KOG0277|consen  237 VRKVKFSPHHA--SLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCG-------LDWSLFD-------------PGQV  294 (311)
T ss_pred             EEEEecCcchh--hHhhhccccceEEecccccchhhhhhhhccceEEec-------ccccccc-------------Ccee
Confidence            99999999876  5999999999999999875542 2222333333221       2344421             2689


Q ss_pred             EEEEeCCcEEEEE
Q 019349          306 SVITYNGYFVEYI  318 (342)
Q Consensus       306 ~~~~~dg~v~~~~  318 (342)
                      +.++-|+.+++|+
T Consensus       295 As~gWDe~l~Vw~  307 (311)
T KOG0277|consen  295 ASTGWDELLYVWN  307 (311)
T ss_pred             eecccccceeeec
Confidence            9999999999996

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.94  E-value=6.1e-26  Score=198.07  Aligned_cols=262  Identities=10%  Similarity=0.054  Sum_probs=195.8

Q ss_pred             EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC-CcEEEEEecC-CceEEEEEcCCeE--EEEE-CCeEEEE
Q 019349           44 RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT-GTALRELNFL-TSILAVRLNKKRL--VIVL-REKTYIY  118 (342)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~-~~~~~~~~~~-~~v~~i~~~~~~~--~~~~-d~~i~i~  118 (342)
                      .|..++..+.+.+....|++.++      .|++|+|||+.. +++++++..+ .+|++++|+++..  +.++ |..+++|
T Consensus       212 gH~kgvsai~~fp~~~hLlLS~g------mD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  212 GHTKGVSAIQWFPKKGHLLLSGG------MDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW  285 (503)
T ss_pred             CCccccchhhhccceeeEEEecC------CCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence            34456666667665666666665      699999999876 8889888755 4899999988753  3344 9999999


Q ss_pred             ECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe
Q 019349          119 DANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS  198 (342)
Q Consensus       119 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s  198 (342)
                      |+++|+++..+....   ...++.+.|++..++.+|. .|+.|+.||+++++.++.+..|-++|+.|.|-++|++++++|
T Consensus       286 DtETG~~~~~f~~~~---~~~cvkf~pd~~n~fl~G~-sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  286 DTETGQVLSRFHLDK---VPTCVKFHPDNQNIFLVGG-SDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS  361 (503)
T ss_pred             ccccceEEEEEecCC---CceeeecCCCCCcEEEEec-CCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence            999999999987643   3556677777744444443 689999999999999999999999999999999999999999


Q ss_pred             CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccc-ccccc
Q 019349          199 EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSIL-GSILP  277 (342)
Q Consensus       199 ~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~-~~~~~  277 (342)
                      +|+++ |+|+.+.+-.+...... ......+|..+|++.   ++++-+.|+.|.+|.+...-+....++..++. .++  
T Consensus       362 Ddks~-riWe~~~~v~ik~i~~~-~~hsmP~~~~~P~~~---~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGy--  434 (503)
T KOG0282|consen  362 DDKSV-RIWENRIPVPIKNIADP-EMHTMPCLTLHPNGK---WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGY--  434 (503)
T ss_pred             cCccE-EEEEcCCCccchhhcch-hhccCcceecCCCCC---eehhhccCceEEEEecccccccCHhhhhcceeccCc--
Confidence            99985 79999988776554332 233477899999999   99999999999999976554433322222211 111  


Q ss_pred             ccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC------CCeeeeEEEeeeec
Q 019349          278 ESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN------CCESTWTLDREFNL  337 (342)
Q Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~------~~~~~~~~~~~~~~  337 (342)
                                     ...+.|.|++.+|++|.+||.+++|++.+-+      .-++.|..+-=|++
T Consensus       435 ---------------s~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~  485 (503)
T KOG0282|consen  435 ---------------SCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV  485 (503)
T ss_pred             ---------------eeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC
Confidence                           1234456777999999999999999987543      22345665555554

>PTZ00420 coronin; Provisional

Probab=99.94  E-value=1.8e-23  Score=195.77  Aligned_cols=223  Identities=11%  Similarity=0.059  Sum_probs=156.5

Q ss_pred             CCCeEEEEECCCCcEEEEEec-CCceEEEEEcCC---eEEEEE-CCeEEEEECCCCc--------eeeEEeCCCCCceEE
Q 019349           73 SPRRLCLFNTTTGTALRELNF-LTSILAVRLNKK---RLVIVL-REKTYIYDANTLA--------ILDTIDTVPNLKGLC  139 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~--------~~~~~~~~~~~~~~~  139 (342)
                      .++.|++|+..+...+..+.. ...|.+++|+|+   .++.++ |++|+|||+.++.        .+..+..|  ...+.
T Consensus        52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH--~~~V~  129 (568)
T PTZ00420         52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH--KKKIS  129 (568)
T ss_pred             ceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecC--CCcEE
Confidence            578999999887777777654 458999999975   333444 8899999997642        12234433  34577


Q ss_pred             EEeeCCCccEE-EEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349          140 AFSPSLNACFL-AVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF  218 (342)
Q Consensus       140 ~~~~~~~~~~l-~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~  218 (342)
                      +++++|++..+ ++++  .||+|+|||+++++.+..+. |...|.+++|+|+|++|++++.|++ |+|||+++++.+.++
T Consensus       130 sVaf~P~g~~iLaSgS--~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~D~~-IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSG--FDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCVGKH-MHIIDPRKQEIASSF  205 (568)
T ss_pred             EEEECCCCCeEEEEEe--CCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEecCCE-EEEEECCCCcEEEEE
Confidence            77788877655 5666  58999999999998777775 6678999999999999999999987 589999999998888


Q ss_pred             ccCcCc---eeEEEEEEecCCCcccEEEEEeCCC----cEEEEecCCCCCCCCCCCccccccccccccccccccccccce
Q 019349          219 RRGTYP---STIFSLSFGQSMQFQDILVATSSSG----SLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHV  291 (342)
Q Consensus       219 ~~~~~~---~~v~~l~fs~d~~~~~~l~~~s~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (342)
                      ..+...   ..+....|++++.   +|++++.|+    +|+|||++....+....   . +.. .+..+...|+++.   
T Consensus       206 ~gH~g~~~s~~v~~~~fs~d~~---~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~---~-ld~-~~~~L~p~~D~~t---  274 (568)
T PTZ00420        206 HIHDGGKNTKNIWIDGLGGDDN---YILSTGFSKNNMREMKLWDLKNTTSALVTM---S-IDN-ASAPLIPHYDEST---  274 (568)
T ss_pred             ecccCCceeEEEEeeeEcCCCC---EEEEEEcCCCCccEEEEEECCCCCCceEEE---E-ecC-CccceEEeeeCCC---
Confidence            644321   1134445778988   888888774    79999998643322100   0 000 0001111333322   


Q ss_pred             eeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          292 LRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       292 ~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                                +..+++|++|+.+++|++..+
T Consensus       275 ----------g~l~lsGkGD~tIr~~e~~~~  295 (568)
T PTZ00420        275 ----------GLIYLIGKGDGNCRYYQHSLG  295 (568)
T ss_pred             ----------CCEEEEEECCCeEEEEEccCC
Confidence                      256888999999999998654

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=5.5e-24  Score=192.23  Aligned_cols=273  Identities=12%  Similarity=0.099  Sum_probs=213.9

Q ss_pred             EEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEE--EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE
Q 019349           11 FFVSFNQDNSGFALSTKDGFKIFDSSTGRLCY--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (342)
Q Consensus        11 ~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~   88 (342)
                      +-+.|+ ..+.||+|....+.+|+-.+++...  ......+..+.+..++.++++...       ++.|.|||..+.+.+
T Consensus       181 nlldWs-s~n~laValg~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~-------~g~v~iwD~~~~k~~  252 (484)
T KOG0305|consen  181 NLLDWS-SANVLAVALGQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTS-------DGTVQIWDVKEQKKT  252 (484)
T ss_pred             hHhhcc-cCCeEEEEecceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeec-------CCeEEEEehhhcccc
Confidence            446788 4557999999999999998887543  333467888899999999987764       899999999998888


Q ss_pred             EEEec--CCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEE
Q 019349           89 RELNF--LTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN  165 (342)
Q Consensus        89 ~~~~~--~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd  165 (342)
                      ..+..  ...|-+++|+...+.... ++.|..+|++..+.... ....+...+|.+.+++++.++|++|  .|+.+.|||
T Consensus       253 ~~~~~~h~~rvg~laW~~~~lssGsr~~~I~~~dvR~~~~~~~-~~~~H~qeVCgLkws~d~~~lASGg--nDN~~~Iwd  329 (484)
T KOG0305|consen  253 RTLRGSHASRVGSLAWNSSVLSSGSRDGKILNHDVRISQHVVS-TLQGHRQEVCGLKWSPDGNQLASGG--NDNVVFIWD  329 (484)
T ss_pred             ccccCCcCceeEEEeccCceEEEecCCCcEEEEEEecchhhhh-hhhcccceeeeeEECCCCCeeccCC--CccceEecc
Confidence            88776  558999999976666666 88999999988765544 2344566899999999999999988  689999999


Q ss_pred             ccCCceeEEEecccCCeeEEEECC-CCCEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEE
Q 019349          166 VMELHSHCEIDAHQAPLAAIVLSS-NGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL  242 (342)
Q Consensus       166 ~~~~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l  242 (342)
                      ....+++..+..|..+|.+++|+| ....||+|+  .|+. |++||+.+|+.+.....+   ..|.+|.|++..+   -|
T Consensus       330 ~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~-i~fwn~~~g~~i~~vdtg---sQVcsL~Wsk~~k---Ei  402 (484)
T KOG0305|consen  330 GLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRC-IKFWNTNTGARIDSVDTG---SQVCSLIWSKKYK---EL  402 (484)
T ss_pred             CCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccE-EEEEEcCCCcEecccccC---CceeeEEEcCCCC---EE
Confidence            988889999999999999999999 678899975  5765 799999999998877543   4599999999986   45


Q ss_pred             EEE--eCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          243 VAT--SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       243 ~~~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      +++  ..++.|.||+..+.+....       +.++              ...+..++..|++..|++++.|.+++.|++-
T Consensus       403 ~sthG~s~n~i~lw~~ps~~~~~~-------l~gH--------------~~RVl~la~SPdg~~i~t~a~DETlrfw~~f  461 (484)
T KOG0305|consen  403 LSTHGYSENQITLWKYPSMKLVAE-------LLGH--------------TSRVLYLALSPDGETIVTGAADETLRFWNLF  461 (484)
T ss_pred             EEecCCCCCcEEEEeccccceeee-------ecCC--------------cceeEEEEECCCCCEEEEecccCcEEecccc
Confidence            444  3567899999887544221       1122              2222233334445899999999999999987


Q ss_pred             cC
Q 019349          321 IN  322 (342)
Q Consensus       321 ~~  322 (342)
                      ..
T Consensus       462 ~~  463 (484)
T KOG0305|consen  462 DE  463 (484)
T ss_pred             CC
Confidence            64

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=4.6e-24  Score=186.60  Aligned_cols=272  Identities=15%  Similarity=0.181  Sum_probs=193.5

Q ss_pred             CCCCeEEEEEcCCCCE-EEEEcCCcEEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            6 SSYPVFFVSFNQDNSG-FALSTKDGFKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~-la~g~~~g~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      ..++|.+++|||..-+ +|+.+.-.+.+|+..+....  +..-...+..+++..++..++...       ..+.|+++|.
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD-------~sG~V~vfD~   97 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGD-------ESGHVKVFDM   97 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccC-------CcCcEEEecc
Confidence            3468999999997755 88888889999998765332  333346677788887777765443       4799999997


Q ss_pred             CCCcEEEEEe-cCCceEEEEEcCCe--EEE-EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           83 TTGTALRELN-FLTSILAVRLNKKR--LVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        83 ~~~~~~~~~~-~~~~v~~i~~~~~~--~~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      ++...+..+. +..++..+.|+++.  +++ ++ |..+++||+.+...+..+..|.+  .+-+.+..|.+..++..|+ .
T Consensus        98 k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htD--YVR~g~~~~~~~hivvtGs-Y  174 (487)
T KOG0310|consen   98 KSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTD--YVRCGDISPANDHIVVTGS-Y  174 (487)
T ss_pred             ccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcc--eeEeeccccCCCeEEEecC-C
Confidence            6644444443 45688888887753  222 33 45899999999876556666555  4555566555444444444 6


Q ss_pred             ccEEEEEEccCC-ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecC
Q 019349          158 KGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQS  235 (342)
Q Consensus       158 ~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d  235 (342)
                      ||.|++||++.. ..+..+ .|..||..|.+-|.|..+|+|+  |..+|+||+.+|. .+..+..  |...|+||++..+
T Consensus       175 Dg~vrl~DtR~~~~~v~el-nhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll~~~~~--H~KtVTcL~l~s~  249 (487)
T KOG0310|consen  175 DGKVRLWDTRSLTSRVVEL-NHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLLTSMFN--HNKTVTCLRLASD  249 (487)
T ss_pred             CceEEEEEeccCCceeEEe-cCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceehhhhhc--ccceEEEEEeecC
Confidence            999999999887 455555 5899999999999999999998  4568999999654 4444432  4557999999999


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEE
Q 019349          236 MQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV  315 (342)
Q Consensus       236 ~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~  315 (342)
                      +.   .|++++-|+.|++||+..-+...                   -|...+   .+..++..+++..+++|-+||.+-
T Consensus       250 ~~---rLlS~sLD~~VKVfd~t~~Kvv~-------------------s~~~~~---pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  250 ST---RLLSGSLDRHVKVFDTTNYKVVH-------------------SWKYPG---PVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             Cc---eEeecccccceEEEEccceEEEE-------------------eeeccc---ceeeEEecCCCceEEEecccceee
Confidence            98   99999999999999976554322                   122221   111222344557899999999877


Q ss_pred             EE
Q 019349          316 EY  317 (342)
Q Consensus       316 ~~  317 (342)
                      +=
T Consensus       305 ~r  306 (487)
T KOG0310|consen  305 IR  306 (487)
T ss_pred             ee
Confidence            55

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.93  E-value=1.5e-23  Score=195.75  Aligned_cols=240  Identities=15%  Similarity=0.202  Sum_probs=192.7

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      ...|.+.|.+++|..-+..|++|+.| .++|||+.+++.......+.-.+..+... ....+ +|     +.|++|++||
T Consensus       245 l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~-~~~~~-sg-----s~D~tVkVW~  317 (537)
T KOG0274|consen  245 LVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTID-PFLLV-SG-----SRDNTVKVWD  317 (537)
T ss_pred             ccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEcc-CceEe-ec-----cCCceEEEEe
Confidence            45788999999999978889999855 58999999998877766444333333322 23322 32     2599999999


Q ss_pred             CCCCcEEEEEe-cCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349           82 TTTGTALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        82 ~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      +.++.++..+. +..+|+++..+.+.++..+ |++|++||..++++++++..|.+  .+.++...+. ..++.++  .|+
T Consensus       318 v~n~~~l~l~~~h~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~--~V~sl~~~~~-~~~~Sgs--~D~  392 (537)
T KOG0274|consen  318 VTNGACLNLLRGHTGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTG--RVYSLIVDSE-NRLLSGS--LDT  392 (537)
T ss_pred             ccCcceEEEeccccccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcc--eEEEEEecCc-ceEEeee--ecc
Confidence            99999999988 7789999999987777777 88999999999999999988655  4566655543 4666665  689


Q ss_pred             EEEEEEccCC-ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCc
Q 019349          160 SVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  238 (342)
Q Consensus       160 ~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (342)
                      +|++||+.+. +++.++.+|..-+..+.+  .+++|++++.||+ ||+||..+++++..+... +...|.++++.  .. 
T Consensus       393 ~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~-Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~-  465 (537)
T KOG0274|consen  393 TIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGT-IKLWDAEEGECLRTLEGR-HVGGVSALALG--KE-  465 (537)
T ss_pred             ceEeecCCchhhhhhhhcCCccccccccc--ccceeEecccccc-EEEeecccCceeeeeccC-CcccEEEeecC--cc-
Confidence            9999999999 999999999999877765  5689999999997 699999999999988643 34568888876  23 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          239 QDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       239 ~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                        .+++++.||++++||++.....+
T Consensus       466 --~il~s~~~~~~~l~dl~~~~~~~  488 (537)
T KOG0274|consen  466 --EILCSSDDGSVKLWDLRSGTLIR  488 (537)
T ss_pred             --eEEEEecCCeeEEEecccCchhh
Confidence              79999999999999999887644

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=1.2e-22  Score=189.27  Aligned_cols=240  Identities=12%  Similarity=0.069  Sum_probs=173.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEE---------------EEEeeCCEEEEEEcC-CCCeEEEEcCCCC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLC---------------YERAVGAFSIVEMLY-SSSLLAIVGAGEQ   69 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~---------------~~~~~~~~~~~~~~~-~~~~~~~~~~g~~   69 (342)
                      -..|+...+++|+..+++++.+.+ ..|+...+..+               +..|.+.+..+.+.+ +.+.++.++    
T Consensus        20 ~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS----   95 (493)
T PTZ00421         20 FLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTAS----   95 (493)
T ss_pred             eeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEe----
Confidence            345777778888777777777775 77875444222               233445677777776 556666555    


Q ss_pred             CCCCCCeEEEEECCCCc-------EEEEEe-cCCceEEEEEcCCe---EEEEE-CCeEEEEECCCCceeeEEeCCCCCce
Q 019349           70 PSLSPRRLCLFNTTTGT-------ALRELN-FLTSILAVRLNKKR---LVIVL-REKTYIYDANTLAILDTIDTVPNLKG  137 (342)
Q Consensus        70 ~~~~d~~i~iwd~~~~~-------~~~~~~-~~~~v~~i~~~~~~---~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  137 (342)
                         .|++|++||+.++.       ++..+. +...|.+++|+|+.   ++.++ |++|+|||+.+++.+..+..+..  .
T Consensus        96 ---~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~--~  170 (493)
T PTZ00421         96 ---EDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSD--Q  170 (493)
T ss_pred             ---CCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCC--c
Confidence               49999999997652       344444 44589999999852   33344 88999999999988877765544  5


Q ss_pred             EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCC-eeEEEECCCCCEEEEEe----CCCcEEEEEEcCCC
Q 019349          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAP-LAAIVLSSNGMYIATAS----EQGTIIRVFLVSEA  212 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~-v~~i~~s~dg~~lat~s----~dg~~irlwd~~~~  212 (342)
                      +.++++++++.+|++++  .||.|++||+++++.+..+.+|.+. +..+.|.+++..|++++    .|++ |++||+++.
T Consensus       171 V~sla~spdG~lLatgs--~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~-VklWDlr~~  247 (493)
T PTZ00421        171 ITSLEWNLDGSLLCTTS--KDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQ-IMLWDTRKM  247 (493)
T ss_pred             eEEEEEECCCCEEEEec--CCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCe-EEEEeCCCC
Confidence            77788888888999888  6899999999999999999999875 44678899888888765    3666 689999876


Q ss_pred             eeEEEeccCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCCCCC
Q 019349          213 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAIN  261 (342)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~~  261 (342)
                      ..............+....|++|+.   +|++++ .|++|++||+..+..
T Consensus       248 ~~p~~~~~~d~~~~~~~~~~d~d~~---~L~lggkgDg~Iriwdl~~~~~  294 (493)
T PTZ00421        248 ASPYSTVDLDQSSALFIPFFDEDTN---LLYIGSKGEGNIRCFELMNERL  294 (493)
T ss_pred             CCceeEeccCCCCceEEEEEcCCCC---EEEEEEeCCCeEEEEEeeCCce
Confidence            5332221111223356677899998   888877 599999999987653

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=8.7e-23  Score=190.11  Aligned_cols=203  Identities=10%  Similarity=0.068  Sum_probs=144.8

Q ss_pred             cCCceEEEEEcC-C--eEEEEE-CCeEEEEECCCCc-------eeeEEeCCCCCceEEEEeeCCCc-cEEEEeCCCCccE
Q 019349           93 FLTSILAVRLNK-K--RLVIVL-REKTYIYDANTLA-------ILDTIDTVPNLKGLCAFSPSLNA-CFLAVPASTTKGS  160 (342)
Q Consensus        93 ~~~~v~~i~~~~-~--~~~~~~-d~~i~i~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~g~  160 (342)
                      +.+.|.+++|+| +  .++.++ |++|++||+.+..       .+..+..|..  .+.+++++|++ .+|++++  .|++
T Consensus        74 H~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~--~V~~l~f~P~~~~iLaSgs--~Dgt  149 (493)
T PTZ00421         74 QEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK--KVGIVSFHPSAMNVLASAG--ADMV  149 (493)
T ss_pred             CCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC--cEEEEEeCcCCCCEEEEEe--CCCE
Confidence            456899999987 4  344444 8899999997642       3445554443  46666677654 5788777  6899


Q ss_pred             EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCccc
Q 019349          161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  240 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~  240 (342)
                      |+|||+.+++.+..+.+|...|.+++|+|+|++|++++.|++ |++||+++++.+.++..+. ...+..+.|.+++.   
T Consensus       150 VrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~-IrIwD~rsg~~v~tl~~H~-~~~~~~~~w~~~~~---  224 (493)
T PTZ00421        150 VNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKK-LNIIDPRDGTIVSSVEAHA-SAKSQRCLWAKRKD---  224 (493)
T ss_pred             EEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCE-EEEEECCCCcEEEEEecCC-CCcceEEEEcCCCC---
Confidence            999999999999999999999999999999999999999997 5999999999888875432 23345678888877   


Q ss_pred             EEEEEe----CCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE-eCCcEE
Q 019349          241 ILVATS----SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT-YNGYFV  315 (342)
Q Consensus       241 ~l~~~s----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~  315 (342)
                      .|++++    .|++|++||++....+.....    +. ..+......|+              ++.+.|++++ .||.|+
T Consensus       225 ~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~----~d-~~~~~~~~~~d--------------~d~~~L~lggkgDg~Ir  285 (493)
T PTZ00421        225 LIITLGCSKSQQRQIMLWDTRKMASPYSTVD----LD-QSSALFIPFFD--------------EDTNLLYIGSKGEGNIR  285 (493)
T ss_pred             eEEEEecCCCCCCeEEEEeCCCCCCceeEec----cC-CCCceEEEEEc--------------CCCCEEEEEEeCCCeEE
Confidence            666654    478999999986543221000    00 00000011233              3347788877 599999


Q ss_pred             EEEEecCC
Q 019349          316 EYIFSINN  323 (342)
Q Consensus       316 ~~~~~~~~  323 (342)
                      +|++..++
T Consensus       286 iwdl~~~~  293 (493)
T PTZ00421        286 CFELMNER  293 (493)
T ss_pred             EEEeeCCc
Confidence            99987543

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=3.7e-23  Score=180.93  Aligned_cols=235  Identities=15%  Similarity=0.220  Sum_probs=182.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      ...|+++.|-+||++||+|.+.| ++|||..+...  .+..+..++-.+.+.+..+.++..++      +|+.+++||+.
T Consensus        68 k~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~s------Dd~v~k~~d~s  141 (487)
T KOG0310|consen   68 KDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGS------DDKVVKYWDLS  141 (487)
T ss_pred             ccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecC------CCceEEEEEcC
Confidence            45799999999999999999999 49999665322  23445677777888777777766655      58999999999


Q ss_pred             CCcEEEEEe-cCCceEEEEEcCC--eEEEEE--CCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           84 TGTALRELN-FLTSILAVRLNKK--RLVIVL--REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        84 ~~~~~~~~~-~~~~v~~i~~~~~--~~~~~~--d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      +.....++. +...|++.++++.  ++++.+  |++|++||++.. ..+.++.. ..|  +-.+.+-|.+..+|++|.  
T Consensus       142 ~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh-g~p--Ve~vl~lpsgs~iasAgG--  216 (487)
T KOG0310|consen  142 TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH-GCP--VESVLALPSGSLIASAGG--  216 (487)
T ss_pred             CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC-CCc--eeeEEEcCCCCEEEEcCC--
Confidence            888654554 4458999999774  445444  999999999876 56666653 333  333333455679998873  


Q ss_pred             ccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349          158 KGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  236 (342)
Q Consensus       158 ~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (342)
                       ..|+|||+.+|. .+.....|...|+|+++..+++.|++||-|+.+ |+||+.+-+.++.+.   .+++|.+|+.+||+
T Consensus       217 -n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~V-KVfd~t~~Kvv~s~~---~~~pvLsiavs~dd  291 (487)
T KOG0310|consen  217 -NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHV-KVFDTTNYKVVHSWK---YPGPVLSIAVSPDD  291 (487)
T ss_pred             -CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccce-EEEEccceEEEEeee---cccceeeEEecCCC
Confidence             689999998655 444455599999999999999999999999984 999998888888874   46789999999999


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCC
Q 019349          237 QFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       237 ~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      +   .++.|-.+|.+.+=+....+
T Consensus       292 ~---t~viGmsnGlv~~rr~~~k~  312 (487)
T KOG0310|consen  292 Q---TVVIGMSNGLVSIRRREVKK  312 (487)
T ss_pred             c---eEEEecccceeeeehhhccc
Confidence            8   99999999998877544433

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.92  E-value=2.4e-24  Score=178.81  Aligned_cols=224  Identities=15%  Similarity=0.230  Sum_probs=172.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      ++|.+++++.+|||||.++|+|+.|. ++|.|++..  +....  +   .+|         ..++              .
T Consensus       109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildverm--laks~--~---~em---------~~~~--------------~  158 (430)
T KOG0640|consen  109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERM--LAKSK--P---KEM---------ISGD--------------T  158 (430)
T ss_pred             eecccceeeeeeCCCCcEEEccCCcceEEEeehhhh--hhhcc--h---hhh---------ccCC--------------c
Confidence            56888999999999999999999886 699997532  11000  0   011         1111              1


Q ss_pred             CCC-cEEEE-EecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           83 TTG-TALRE-LNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        83 ~~~-~~~~~-~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      ..+ -.+++ +.+..+|.++.|+|...++++   |++|++||+......+-++.......+.+++++|.|.+|+.+.  .
T Consensus       159 qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgT--d  236 (430)
T KOG0640|consen  159 QARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGT--D  236 (430)
T ss_pred             ccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEec--C
Confidence            111 22333 356679999999998766655   8999999997654333333334445677888888888998876  5


Q ss_pred             ccEEEEEEccCCceeEEE---ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349          158 KGSVLVYNVMELHSHCEI---DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  234 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~---~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~  234 (342)
                      ..++++||+.+.++...-   ..|++.|+++.+|+.|++.+|||.||. ||+||--+++++.++...+..++|.+..|+.
T Consensus       237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~-IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk  315 (430)
T KOG0640|consen  237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGA-IKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK  315 (430)
T ss_pred             CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCc-EEeeccccHHHHHHHHhhcCCceeeeEEEcc
Confidence            789999999999876443   479999999999999999999999997 6999999999999988777778899999999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          235 SMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       235 d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      +++   |+++.+.|.++++|++.++...+
T Consensus       316 n~k---yiLsSG~DS~vkLWEi~t~R~l~  341 (430)
T KOG0640|consen  316 NGK---YILSSGKDSTVKLWEISTGRMLK  341 (430)
T ss_pred             CCe---EEeecCCcceeeeeeecCCceEE
Confidence            999   99999999999999999887654

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=3e-23  Score=171.63  Aligned_cols=230  Identities=15%  Similarity=0.168  Sum_probs=178.6

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      +..++++|.+++|+.||+.+++|+-|+ +++||+.+++.. ...|.+++..+.|....++-.++.|     +.|++|+.|
T Consensus        68 ~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TG-----SWDKTlKfW  142 (347)
T KOG0647|consen   68 QQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTG-----SWDKTLKFW  142 (347)
T ss_pred             hhccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccceeEEEEecCCCcceeEec-----ccccceeec
Confidence            456889999999999999988876665 799999999654 5567788988888887776666666     479999999


Q ss_pred             ECCCCcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCcee-eEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349           81 NTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAIL-DTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (342)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  158 (342)
                      |.+...++.+++++..++++.+-..-++++. ++.|.+|+++++... +.++.+-+ -.+-+++...++...|.++  ..
T Consensus       143 D~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk-~Q~R~va~f~d~~~~alGs--iE  219 (347)
T KOG0647|consen  143 DTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLK-WQTRCVACFQDKDGFALGS--IE  219 (347)
T ss_pred             ccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCccc-ceeeEEEEEecCCceEeee--ec
Confidence            9999999999999999999999888777777 889999999776432 23322211 2233333333333445555  68


Q ss_pred             cEEEEEEccCC--ceeEEEecccC---------CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE
Q 019349          159 GSVLVYNVMEL--HSHCEIDAHQA---------PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  227 (342)
Q Consensus       159 g~i~iwd~~~~--~~~~~~~~h~~---------~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v  227 (342)
                      |.+.|..+..+  +.-.+|+.|..         +|++|+|+|.-..|+|++.||+. .+||-....++++...  ++.+|
T Consensus       220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf-~FWDkdar~kLk~s~~--~~qpI  296 (347)
T KOG0647|consen  220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTF-SFWDKDARTKLKTSET--HPQPI  296 (347)
T ss_pred             ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceE-EEecchhhhhhhccCc--CCCcc
Confidence            99999988776  44567788873         58999999999999999999985 6999988888877653  46679


Q ss_pred             EEEEEecCCCcccEEEEEe
Q 019349          228 FSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       228 ~~l~fs~d~~~~~~l~~~s  246 (342)
                      ++.+|+.+|.   ++|-+.
T Consensus       297 tcc~fn~~G~---ifaYA~  312 (347)
T KOG0647|consen  297 TCCSFNRNGS---IFAYAL  312 (347)
T ss_pred             ceeEecCCCC---EEEEEe
Confidence            9999999998   666543

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.92  E-value=7.6e-23  Score=173.16  Aligned_cols=278  Identities=13%  Similarity=0.104  Sum_probs=197.9

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .+.|...|.++.||.||.+||+|.-+| ++||...++......  ....+..+.|.+....+ ++|.      .|+.+-+
T Consensus       102 ltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~il-lAG~------~DGsvWm  174 (399)
T KOG0296|consen  102 LTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHIL-LAGS------TDGSVWM  174 (399)
T ss_pred             ecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEE-Eeec------CCCcEEE
Confidence            568899999999999999999998888 599999999766555  44667777777644444 4443      5999999


Q ss_pred             EECCCCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349           80 FNTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        80 wd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      |.+.++.....+. +..++.+=.|.|++  ++.+. |++|++||..+++++..+.... .....+++.+..+..+..+. 
T Consensus       175 w~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e-~~~~~~~~~~~~~~~~~~g~-  252 (399)
T KOG0296|consen  175 WQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAE-GLELPCISLNLAGSTLTKGN-  252 (399)
T ss_pred             EECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccc-cCcCCccccccccceeEecc-
Confidence            9998865444444 44577777777764  33333 8899999999999998885332 22233445555555555544 


Q ss_pred             CCccEEEEEEccCCceeEEEe--------cccCCeeEEEEC---CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc
Q 019349          156 TTKGSVLVYNVMELHSHCEID--------AHQAPLAAIVLS---SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP  224 (342)
Q Consensus       156 ~~~g~i~iwd~~~~~~~~~~~--------~h~~~v~~i~~s---~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~  224 (342)
                       .++.+.+-...+++.+....        .|...+.||.+.   ..-.+.|+|+-||++ -|||+...+..+.+.   ++
T Consensus       253 -~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i-~iyD~a~~~~R~~c~---he  327 (399)
T KOG0296|consen  253 -SEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTI-AIYDLAASTLRHICE---HE  327 (399)
T ss_pred             -CCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceE-EEEecccchhheecc---CC
Confidence             57778887777777665443        455555565554   455789999999996 599998776555442   34


Q ss_pred             eeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccE
Q 019349          225 STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRAS  304 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (342)
                      ..|..+-|-+ ..   +|++++.+|.|+.||.+++...-                     ...+|...+..++..++.+.
T Consensus       328 ~~V~~l~w~~-t~---~l~t~c~~g~v~~wDaRtG~l~~---------------------~y~GH~~~Il~f~ls~~~~~  382 (399)
T KOG0296|consen  328 DGVTKLKWLN-TD---YLLTACANGKVRQWDARTGQLKF---------------------TYTGHQMGILDFALSPQKRL  382 (399)
T ss_pred             CceEEEEEcC-cc---hheeeccCceEEeeeccccceEE---------------------EEecCchheeEEEEcCCCcE
Confidence            4599999988 44   89999999999999999876522                     11122222233334556689


Q ss_pred             EEEEEeCCcEEEEEE
Q 019349          305 VSVITYNGYFVEYIF  319 (342)
Q Consensus       305 l~~~~~dg~v~~~~~  319 (342)
                      ++++|.|+..++|..
T Consensus       383 vvT~s~D~~a~VF~v  397 (399)
T KOG0296|consen  383 VVTVSDDNTALVFEV  397 (399)
T ss_pred             EEEecCCCeEEEEec
Confidence            999999999999964

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=1.5e-22  Score=164.39  Aligned_cols=235  Identities=16%  Similarity=0.239  Sum_probs=191.9

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEE-cCCcEEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDN-SGFALS-TKDGFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~-~~la~g-~~~g~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      .++.+.|-.++|+|.. .+|+++ +++.+++||..+++.+..... +.--.+.+.++++++++.+.       |..|...
T Consensus        61 ~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~k-------dD~it~i  133 (313)
T KOG1407|consen   61 RGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNK-------DDRITFI  133 (313)
T ss_pred             cCCCcchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecC-------cccEEEE
Confidence            4567788889999855 456655 455689999999987765543 33345677788888877664       8899999


Q ss_pred             ECCCCcEEEEEecCCceEEEEEcCC-eEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           81 NTTTGTALRELNFLTSILAVRLNKK-RLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      |.++.+...+.++...+..+.|+.+ .+++..  -|.|.|......+.+.+++.|+  ....|+.++|+++++|+++  .
T Consensus       134 d~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~--snCicI~f~p~GryfA~Gs--A  209 (313)
T KOG1407|consen  134 DARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHP--SNCICIEFDPDGRYFATGS--A  209 (313)
T ss_pred             EecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCC--cceEEEEECCCCceEeecc--c
Confidence            9999999888888888888888543 344444  4799999999999999998765  5788999999999999988  6


Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCC
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (342)
                      |-.+.+||+...-+++.+..|.-||..|.||.||++||+||+|- .|-|=++++|..+.+++   ..++.+.++|+|...
T Consensus       210 DAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh-~IDIA~vetGd~~~eI~---~~~~t~tVAWHPk~~  285 (313)
T KOG1407|consen  210 DALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDH-FIDIAEVETGDRVWEIP---CEGPTFTVAWHPKRP  285 (313)
T ss_pred             cceeeccChhHhhhheeeccccCceEEEEeccCcceeeccCccc-eEEeEecccCCeEEEee---ccCCceeEEecCCCc
Confidence            89999999999999999999999999999999999999999996 47899999999999884   356689999999998


Q ss_pred             cccEEEEEeCC---------CcEEEEec
Q 019349          238 FQDILVATSSS---------GSLHVFSP  256 (342)
Q Consensus       238 ~~~~l~~~s~d---------g~i~vwd~  256 (342)
                         +||-+++|         |+|++|-+
T Consensus       286 ---LLAyA~ddk~~d~~reag~vKiFG~  310 (313)
T KOG1407|consen  286 ---LLAYACDDKDGDSNREAGTVKIFGL  310 (313)
T ss_pred             ---eeeEEecCCCCccccccceeEEecC
Confidence               88888765         45666654

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.6e-22  Score=161.48  Aligned_cols=232  Identities=14%  Similarity=0.137  Sum_probs=172.6

Q ss_pred             eeCCEEEEEEcCC-CCeEEEEcCCCCCCCCCCeEEEEECCCCcE---EEEE--ecCCceEEEEEcCCeEEEEE---CCeE
Q 019349           45 AVGAFSIVEMLYS-SSLLAIVGAGEQPSLSPRRLCLFNTTTGTA---LREL--NFLTSILAVRLNKKRLVIVL---REKT  115 (342)
Q Consensus        45 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~---~~~~--~~~~~v~~i~~~~~~~~~~~---d~~i  115 (342)
                      +.+.+-.+++.+. +..++.+|+       |+.|++|+...+..   ...+  .+...|++++++|.+.++++   |.++
T Consensus        13 h~~r~W~~awhp~~g~ilAscg~-------Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~   85 (312)
T KOG0645|consen   13 HKDRVWSVAWHPGKGVILASCGT-------DKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATV   85 (312)
T ss_pred             CCCcEEEEEeccCCceEEEeecC-------CceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceE
Confidence            3345666677665 445666654       99999999885332   2222  24458999999887665554   8999


Q ss_pred             EEEECCCC--ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC---ceeEEEecccCCeeEEEECCC
Q 019349          116 YIYDANTL--AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL---HSHCEIDAHQAPLAAIVLSSN  190 (342)
Q Consensus       116 ~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~---~~~~~~~~h~~~v~~i~~s~d  190 (342)
                      .||.-.++  +++..++.|.+.  +-++++++++.+||+++  .|..|-||.+...   ++...++.|...|..+.|+|.
T Consensus        86 ~Iw~k~~~efecv~~lEGHEnE--VK~Vaws~sG~~LATCS--RDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt  161 (312)
T KOG0645|consen   86 VIWKKEDGEFECVATLEGHENE--VKCVAWSASGNYLATCS--RDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT  161 (312)
T ss_pred             EEeecCCCceeEEeeeeccccc--eeEEEEcCCCCEEEEee--CCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence            99987654  677888887775  55666777788999999  5899999998744   467889999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEEcCC---CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 019349          191 GMYIATASEQGTIIRVFLVSE---ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGR  267 (342)
Q Consensus       191 g~~lat~s~dg~~irlwd~~~---~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~  267 (342)
                      ..+|+++|-|.+ ||+|+-..   -++..++..  +...|.+++|+|.|.   .|+++++|++|+||.....-+..    
T Consensus       162 ~dlL~S~SYDnT-Ik~~~~~~dddW~c~~tl~g--~~~TVW~~~F~~~G~---rl~s~sdD~tv~Iw~~~~~~~~~----  231 (312)
T KOG0645|consen  162 EDLLFSCSYDNT-IKVYRDEDDDDWECVQTLDG--HENTVWSLAFDNIGS---RLVSCSDDGTVSIWRLYTDLSGM----  231 (312)
T ss_pred             cceeEEeccCCe-EEEEeecCCCCeeEEEEecC--ccceEEEEEecCCCc---eEEEecCCcceEeeeeccCcchh----
Confidence            999999999998 69998762   246667643  344799999999998   99999999999999855322100    


Q ss_pred             ccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          268 TSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                             +..+.....|.                +..|+++++|+.|++|.-+
T Consensus       232 -------~sr~~Y~v~W~----------------~~~IaS~ggD~~i~lf~~s  261 (312)
T KOG0645|consen  232 -------HSRALYDVPWD----------------NGVIASGGGDDAIRLFKES  261 (312)
T ss_pred             -------cccceEeeeec----------------ccceEeccCCCEEEEEEec
Confidence                   00111112343                1579999999999999865

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=4.7e-23  Score=186.24  Aligned_cols=236  Identities=12%  Similarity=0.121  Sum_probs=187.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEee---CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      +..|+++.|+++|++||+|..+|. .|||....+.+.....   ..+..+++  + ..++..|.      .++.|..+|+
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW--~-~~~lssGs------r~~~I~~~dv  287 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAW--N-SSVLSSGS------RDGKILNHDV  287 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEec--c-CceEEEec------CCCcEEEEEE
Confidence            678999999999999999999985 9999887765544433   34444444  3 34444444      4899999999


Q ss_pred             CCCcEEEE-Ee-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           83 TTGTALRE-LN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        83 ~~~~~~~~-~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      +..+.... +. +...|..++|+++....++   |+.+.|||.........+..|.......+++|.. ...||++|...
T Consensus       288 R~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q-~~lLAsGGGs~  366 (484)
T KOG0305|consen  288 RISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQ-SGLLATGGGSA  366 (484)
T ss_pred             ecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCc-cCceEEcCCCc
Confidence            98876655 44 4569999999999888877   8899999998888888887777765566666654 45888888889


Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  235 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d  235 (342)
                      |++|++||..+++.+..+.. .+.|.+|.|++..+.|+++-  .++. |.||+..+.+++..+..  |...|..+++|||
T Consensus       367 D~~i~fwn~~~g~~i~~vdt-gsQVcsL~Wsk~~kEi~sthG~s~n~-i~lw~~ps~~~~~~l~g--H~~RVl~la~SPd  442 (484)
T KOG0305|consen  367 DRCIKFWNTNTGARIDSVDT-GSQVCSLIWSKKYKELLSTHGYSENQ-ITLWKYPSMKLVAELLG--HTSRVLYLALSPD  442 (484)
T ss_pred             ccEEEEEEcCCCcEeccccc-CCceeeEEEcCCCCEEEEecCCCCCc-EEEEeccccceeeeecC--CcceeEEEEECCC
Confidence            99999999999999887764 46799999999987777753  3444 57999999888888754  3566999999999


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCC
Q 019349          236 MQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       236 ~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      +.   .+++|+.|.++++|++-..
T Consensus       443 g~---~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  443 GE---TIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             CC---EEEEecccCcEEeccccCC
Confidence            99   9999999999999998664

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=3.6e-24  Score=181.03  Aligned_cols=278  Identities=12%  Similarity=0.122  Sum_probs=205.3

Q ss_pred             CCCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            3 NQSSSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~-~~la~g~~~g-~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      +..|...|.|++=+|.. ..+++|+-|| +++||+.+...+  +..|.+-+.-+.+..  ..++.+|.       |++|+
T Consensus        62 L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgd-------DKtvK  132 (433)
T KOG0268|consen   62 LDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGD-------DKTVK  132 (433)
T ss_pred             ccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecC-------Cccee
Confidence            45788899999999987 6789998888 699999886554  344445565555544  55666664       89999


Q ss_pred             EEECCCCcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc-EEEEeCCC
Q 019349           79 LFNTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC-FLAVPAST  156 (342)
Q Consensus        79 iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~  156 (342)
                      .|.+.- .++.++-..+.+.+|..+...-..++ ...|.|||.+...++.++.....  .+.++.++|... .|++++  
T Consensus       133 ~wk~~~-~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~D--ti~svkfNpvETsILas~~--  207 (433)
T KOG0268|consen  133 QWKIDG-PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGAD--SISSVKFNPVETSILASCA--  207 (433)
T ss_pred             eeeccC-CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCC--ceeEEecCCCcchheeeec--
Confidence            999765 57778877788888888776666666 55999999988888888876554  466666666544 555555  


Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee-EEEeccCcCceeEEEEEEecC
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-SYSFRRGTYPSTIFSLSFGQS  235 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~-~~~~~~~~~~~~v~~l~fs~d  235 (342)
                      .|+.|.+||+++..+++.+.- .-.-+.|+|+|++--+++|++|..+ ..+|++..+. +..+..  +...|.++.|||.
T Consensus       208 sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~ED~nl-Y~~DmR~l~~p~~v~~d--hvsAV~dVdfspt  283 (433)
T KOG0268|consen  208 SDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANEDHNL-YTYDMRNLSRPLNVHKD--HVSAVMDVDFSPT  283 (433)
T ss_pred             cCCceEEEecccCCccceeee-eccccceecCccccceeeccccccc-eehhhhhhcccchhhcc--cceeEEEeccCCC
Confidence            589999999999998766542 2345789999998889999999875 6999987653 333322  3456999999999


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEE
Q 019349          236 MQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV  315 (342)
Q Consensus       236 ~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~  315 (342)
                      |+   -+++||-|.+|+||.++......      -+...-....+...|+.+.              .+|++||.||.|+
T Consensus       284 G~---EfvsgsyDksIRIf~~~~~~SRd------iYhtkRMq~V~~Vk~S~Ds--------------kyi~SGSdd~nvR  340 (433)
T KOG0268|consen  284 GQ---EFVSGSYDKSIRIFPVNHGHSRD------IYHTKRMQHVFCVKYSMDS--------------KYIISGSDDGNVR  340 (433)
T ss_pred             cc---hhccccccceEEEeecCCCcchh------hhhHhhhheeeEEEEeccc--------------cEEEecCCCccee
Confidence            99   89999999999999987654211      1111122233444566654              8999999999999


Q ss_pred             EEEEec
Q 019349          316 EYIFSI  321 (342)
Q Consensus       316 ~~~~~~  321 (342)
                      +|.-..
T Consensus       341 lWka~A  346 (433)
T KOG0268|consen  341 LWKAKA  346 (433)
T ss_pred             eeecch
Confidence            997543

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.92  E-value=5.6e-23  Score=195.20  Aligned_cols=244  Identities=16%  Similarity=0.172  Sum_probs=193.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCC----------C--------c--EEEEEeeCCEEEEEEcCCCCeEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSST----------G--------R--LCYERAVGAFSIVEMLYSSSLLA   62 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~----------~--------~--~~~~~~~~~~~~~~~~~~~~~~~   62 (342)
                      ..|.+.|+|+.|+|||++||+|++|.+ .||....          |        +  .++..|...+.-+.|.++..+++
T Consensus        66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lv  145 (942)
T KOG0973|consen   66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLV  145 (942)
T ss_pred             ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEE
Confidence            368899999999999999999999996 9998762          0        1  12334556677777777777777


Q ss_pred             EEcCCCCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCC---
Q 019349           63 IVGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNL---  135 (342)
Q Consensus        63 ~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~---  135 (342)
                      .++.       |++|.|||.++.+.+..+. +.+.|.++.|+|-+.++|+   |++|+||++.+..+.+.+..+...   
T Consensus       146 S~s~-------DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~  218 (942)
T KOG0973|consen  146 SVSL-------DNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPL  218 (942)
T ss_pred             Eecc-------cceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCC
Confidence            7765       9999999999998888776 5569999999998877777   779999999888777777655442   


Q ss_pred             -ceEEEEeeCCCccEEEEeCCC--CccEEEEEEccCCceeEEEecccCCeeEEEECCC-----CC------------EEE
Q 019349          136 -KGLCAFSPSLNACFLAVPAST--TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSN-----GM------------YIA  195 (342)
Q Consensus       136 -~~~~~~~~~~~~~~l~~~~~~--~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~d-----g~------------~la  195 (342)
                       ....-++++|||.+|+++...  ...++.|.+-.+-+.-..|-+|..++.+++|+|.     ..            .+|
T Consensus       219 ~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~A  298 (942)
T KOG0973|consen  219 TTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAA  298 (942)
T ss_pred             cceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEE
Confidence             235578899999999987532  2357888888777777889999999999999862     11            689


Q ss_pred             EEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          196 TASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       196 t~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      +||.|+++ -||.....+++..... .....|.+|+|+|||.   .|.++|.||+|.++.++..
T Consensus       299 vgSqDrSl-SVW~T~~~RPl~vi~~-lf~~SI~DmsWspdG~---~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  299 VGSQDRSL-SVWNTALPRPLFVIHN-LFNKSIVDMSWSPDGF---SLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             EecCCccE-EEEecCCCCchhhhhh-hhcCceeeeeEcCCCC---eEEEEecCCeEEEEEcchH
Confidence            99999985 7999977776654421 2244699999999998   8999999999999998653

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.92  E-value=1e-22  Score=173.15  Aligned_cols=275  Identities=14%  Similarity=0.066  Sum_probs=184.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCC-cEEEEEeeCCEEEEEEcC-CCC-eEEEEcCCCCCCCCCCeEEEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG-RLCYERAVGAFSIVEMLY-SSS-LLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~-~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      ++.-|.++.-.  +..+.+|+-||. |+||.... ..+...+.+.+..+.+.. +.. ..++.++      .|+++++|.
T Consensus       104 hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas------~Dqtl~Lw~  175 (423)
T KOG0313|consen  104 HDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSAS------MDQTLRLWK  175 (423)
T ss_pred             chhhhhhhccc--CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEec------CCceEEEEE
Confidence            44445666555  678999998886 99997543 234455556666444432 222 2222222      599999999


Q ss_pred             CCCCcEEEEE-----ecCCceEEEEEcCCeEEEEE---CCeEEEEECCC-------------------------CceeeE
Q 019349           82 TTTGTALREL-----NFLTSILAVRLNKKRLVIVL---REKTYIYDANT-------------------------LAILDT  128 (342)
Q Consensus        82 ~~~~~~~~~~-----~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~-------------------------~~~~~~  128 (342)
                      ...++.....     .|...|-++...++...+++   |..++||+..+                         ..++-.
T Consensus       176 ~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vt  255 (423)
T KOG0313|consen  176 WNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVT  255 (423)
T ss_pred             ecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEE
Confidence            9877644321     34568999998877665554   99999999421                         112222


Q ss_pred             EeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349          129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL  208 (342)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd  208 (342)
                      +..|..  .+.++-+.+ ...+.+++  .|.+|+.||+.++..+.++.+ ..+++||.++|..++||+||.|.. |||||
T Consensus       256 l~GHt~--~Vs~V~w~d-~~v~yS~S--wDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~-irl~D  328 (423)
T KOG0313|consen  256 LEGHTE--PVSSVVWSD-ATVIYSVS--WDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRH-IRLWD  328 (423)
T ss_pred             eccccc--ceeeEEEcC-CCceEeec--ccceEEEEEeecccceeeeec-CcceeEeecccccceeeecCCCCc-eeecC
Confidence            333333  344444444 33444554  899999999999999888876 467999999999999999999975 79999


Q ss_pred             cCCCe--e-EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccccccc
Q 019349          209 VSEAT--K-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLD  285 (342)
Q Consensus       209 ~~~~~--~-~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (342)
                      .+++.  . ...|.  .|..-|.++.|+|.+.+  +|+++|.||++++||++..+.+..      -+.++-...+..-|.
T Consensus       329 PR~~~gs~v~~s~~--gH~nwVssvkwsp~~~~--~~~S~S~D~t~klWDvRS~k~ply------dI~~h~DKvl~vdW~  398 (423)
T KOG0313|consen  329 PRTGDGSVVSQSLI--GHKNWVSSVKWSPTNEF--QLVSGSYDNTVKLWDVRSTKAPLY------DIAGHNDKVLSVDWN  398 (423)
T ss_pred             CCCCCCceeEEeee--cchhhhhheecCCCCce--EEEEEecCCeEEEEEeccCCCcce------eeccCCceEEEEecc
Confidence            98764  2 23332  23456999999999884  999999999999999998763210      011111122222333


Q ss_pred             ccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          286 PADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      -               +..|++|+.|.++++|.-.
T Consensus       399 ~---------------~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  399 E---------------GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             C---------------CceEEeccCcceEEEeccc
Confidence            2               2579999999999999643

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.3e-22  Score=167.62  Aligned_cols=282  Identities=16%  Similarity=0.127  Sum_probs=185.7

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE------EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCC
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (342)
                      +-+|...|++++|+.||++||+.++|+ +|+|++..+...      ...+.++-..+.+.++..-+++.-.      ..+
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~------~g~  155 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVK------RGN  155 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEc------cCC
Confidence            346888999999999999999998887 599999876332      1122345566777777755443332      257


Q ss_pred             eEEEEECCCCcE---EE------EEec----CCceEEEEEcCC--eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEE
Q 019349           76 RLCLFNTTTGTA---LR------ELNF----LTSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC  139 (342)
Q Consensus        76 ~i~iwd~~~~~~---~~------~~~~----~~~v~~i~~~~~--~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (342)
                      ++++|.+.+.+.   ..      ...+    .-.+.++-....  .++.++ |.+|.+|++. |+.+..+++.......+
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~a  234 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDA  234 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeeccccccccce
Confidence            899998754321   10      0111    124444444443  445555 7799999999 89999987765555555


Q ss_pred             EEeeCCCccEEEEeCCCCccEEEEEEcc---CC-----ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 019349          140 AFSPSLNACFLAVPASTTKGSVLVYNVM---EL-----HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       140 ~~~~~~~~~~l~~~~~~~~g~i~iwd~~---~~-----~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~  211 (342)
                      +++  |+++++|++|.+  --|++|+.-   .|     ..+..+++|.+.|...+||++.+.++|.|.||+ +||||+.-
T Consensus       235 avS--P~GRFia~~gFT--pDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~-wriwdtdV  309 (420)
T KOG2096|consen  235 AVS--PDGRFIAVSGFT--PDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGK-WRIWDTDV  309 (420)
T ss_pred             eeC--CCCcEEEEecCC--CCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCc-EEEeeccc
Confidence            554  678899999964  569999862   22     346778999999999999999999999999998 69999852


Q ss_pred             C----e---eEEEeccC--cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccc
Q 019349          212 A----T---KSYSFRRG--TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNE  282 (342)
Q Consensus       212 ~----~---~~~~~~~~--~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (342)
                      .    +   .+++....  ...++-..|+++|+++   .|| .+...++++|..++++.....+.-      +.......
T Consensus       310 rY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~---~lA-~s~gs~l~~~~se~g~~~~~~e~~------h~~~Is~i  379 (420)
T KOG2096|consen  310 RYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD---SLA-VSFGSDLKVFASEDGKDYPELEDI------HSTTISSI  379 (420)
T ss_pred             eEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc---EEE-eecCCceEEEEcccCccchhHHHh------hcCceeeE
Confidence            2    2   22222111  1112344799999998   555 555668999999887654321110      00111122


Q ss_pred             cccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          283 VLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      .|++++              . .++.|+|..++++.=.+
T Consensus       380 s~~~~g--------------~-~~atcGdr~vrv~~ntp  403 (420)
T KOG2096|consen  380 SYSSDG--------------K-YIATCGDRYVRVIRNTP  403 (420)
T ss_pred             EecCCC--------------c-EEeeecceeeeeecCCC
Confidence            455544              4 44567788899886444

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=3e-21  Score=153.95  Aligned_cols=280  Identities=12%  Similarity=0.143  Sum_probs=202.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-cEEEEeC------CCC--------cEEEE---EeeCCEEEEEEcCCCCeEEEEcCC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDS------STG--------RLCYE---RAVGAFSIVEMLYSSSLLAIVGAG   67 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~------~~~--------~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g   67 (342)
                      ..+.|++++|.|.|.+-|+|++. .+||.-.      ..+        .++..   .+.+.+.+++|.+.+..+++.+  
T Consensus        31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs--  108 (350)
T KOG0641|consen   31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS--  108 (350)
T ss_pred             chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC--
Confidence            35679999999999999999875 4788732      111        12222   2347888999988888887665  


Q ss_pred             CCCCCCCCeEEEEECCCC--cEE---EEE-ecCCceEEEEEcCC----eEEEEE----CCeEEEEECCCCceeeEEeCCC
Q 019349           68 EQPSLSPRRLCLFNTTTG--TAL---REL-NFLTSILAVRLNKK----RLVIVL----REKTYIYDANTLAILDTIDTVP  133 (342)
Q Consensus        68 ~~~~~~d~~i~iwd~~~~--~~~---~~~-~~~~~v~~i~~~~~----~~~~~~----d~~i~i~d~~~~~~~~~~~~~~  133 (342)
                           +|++|++.-....  +..   .++ -+.+.|++++|-.+    ..++++    |.+|++-|...++.++.+..|.
T Consensus       109 -----ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sght  183 (350)
T KOG0641|consen  109 -----NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHT  183 (350)
T ss_pred             -----CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCc
Confidence                 4899998655432  222   122 24568999998432    333333    6689999999998888886655


Q ss_pred             CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec--c-----cCCeeEEEECCCCCEEEEEeCCCcEEEE
Q 019349          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA--H-----QAPLAAIVLSSNGMYIATASEQGTIIRV  206 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~--h-----~~~v~~i~~s~dg~~lat~s~dg~~irl  206 (342)
                      .. .+.-++++  +.++++++  +|.+|+.||++-..++.++..  |     .+.|.++++.|.|++|++|-.|... .+
T Consensus       184 gh-ilalyswn--~~m~~sgs--qdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc-~l  257 (350)
T KOG0641|consen  184 GH-ILALYSWN--GAMFASGS--QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSC-ML  257 (350)
T ss_pred             cc-EEEEEEec--CcEEEccC--CCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCce-EE
Confidence            42 22334454  44666554  799999999998888877642  2     3679999999999999999999886 59


Q ss_pred             EEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccc
Q 019349          207 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDP  286 (342)
Q Consensus       207 wd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (342)
                      +|++.+..+..|..  +.+.|.|+.|||...   ||+++|-|..|++-|+...-...   -+.-.++.+..+.+.+.|+|
T Consensus       258 ydirg~r~iq~f~p--hsadir~vrfsp~a~---yllt~syd~~ikltdlqgdla~e---l~~~vv~ehkdk~i~~rwh~  329 (350)
T KOG0641|consen  258 YDIRGGRMIQRFHP--HSADIRCVRFSPGAH---YLLTCSYDMKIKLTDLQGDLAHE---LPIMVVAEHKDKAIQCRWHP  329 (350)
T ss_pred             EEeeCCceeeeeCC--CccceeEEEeCCCce---EEEEecccceEEEeecccchhhc---CceEEEEeccCceEEEEecC
Confidence            99999999998854  467799999999998   99999999999999997653211   11112233444566789999


Q ss_pred             cccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          287 ADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      ..              -..++.+.|.++..|.++
T Consensus       330 ~d--------------~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  330 QD--------------FSFISSSADKTATLWALN  349 (350)
T ss_pred             cc--------------ceeeeccCcceEEEeccC
Confidence            76              357788889999999764

>PTZ00420 coronin; Provisional

Probab=99.91  E-value=1.3e-21  Score=183.36  Aligned_cols=225  Identities=11%  Similarity=0.098  Sum_probs=162.9

Q ss_pred             CCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEeCCCCcE----------EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCC
Q 019349            4 QSSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSSTGRL----------CYERAVGAFSIVEMLYSSSLLAIVGAGEQPS   71 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d-~~~la~g~~~g-~~v~d~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   71 (342)
                      ..|..+|.+++|+|+ +.+||+|+.|+ ++|||+.++..          .+..|...+..+.+.+....+++.++     
T Consensus        71 ~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS-----  145 (568)
T PTZ00420         71 KGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG-----  145 (568)
T ss_pred             cCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe-----
Confidence            467889999999997 78999999887 59999875421          22334567777888777665544433     


Q ss_pred             CCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEE---eeCC
Q 019349           72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAF---SPSL  145 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~---~~~~  145 (342)
                       .|++|++||+++++.+..+.++..|.++.|++++..+++   |+.|+|||+++++.+.++..|.......++   .+++
T Consensus       146 -~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~  224 (568)
T PTZ00420        146 -FDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG  224 (568)
T ss_pred             -CCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC
Confidence             489999999999998888877788999999887644433   789999999999998888877654333222   2346


Q ss_pred             CccEEEEeCCCC--ccEEEEEEccC-CceeEEEe--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349          146 NACFLAVPASTT--KGSVLVYNVME-LHSHCEID--AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR  220 (342)
Q Consensus       146 ~~~~l~~~~~~~--~g~i~iwd~~~-~~~~~~~~--~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~  220 (342)
                      ++.+++++|.+.  +++|+|||+++ .+++..+.  .+.+.+...-..++|.++++|+.|++ ||+|++..+. +..+..
T Consensus       225 d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~t-Ir~~e~~~~~-~~~l~~  302 (568)
T PTZ00420        225 DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGN-CRYYQHSLGS-IRKVNE  302 (568)
T ss_pred             CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCe-EEEEEccCCc-EEeecc
Confidence            777888877421  24899999985 45555543  33344444444567999999999997 6999998764 344433


Q ss_pred             CcCceeEEEEEEecCC
Q 019349          221 GTYPSTIFSLSFGQSM  236 (342)
Q Consensus       221 ~~~~~~v~~l~fs~d~  236 (342)
                      .....++.+++|.|..
T Consensus       303 ~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        303 YKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             cccCCCccceEEcccc
Confidence            3334568889999975

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=1.2e-21  Score=162.20  Aligned_cols=239  Identities=13%  Similarity=0.164  Sum_probs=175.0

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEeCCC-CcEEEE---EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349            4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSST-GRLCYE---RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         4 ~~~~~~V~~l~fs~-d~~~la~g~~~g-~~v~d~~~-~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      ++++..|.+|+||| ...+|++|+.|+ +|+|+++. +...-.   .+.+++..++|..+++.+++.+.       |+.+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~-------Dk~~   96 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGC-------DKQA   96 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeecc-------CCce
Confidence            46778899999999 455566888887 79999876 343321   24478888889888877766654       9999


Q ss_pred             EEEECCCCcEEEEEecCCceEEEEEcCCeE--EEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349           78 CLFNTTTGTALRELNFLTSILAVRLNKKRL--VIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  152 (342)
                      ++||+.+++....-.|..+|+.+.|-+...  .+++   |+++++||.+....+.+++.+.   .+.++..-..  +++.
T Consensus        97 k~wDL~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe---RvYa~Dv~~p--m~vV  171 (347)
T KOG0647|consen   97 KLWDLASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE---RVYAADVLYP--MAVV  171 (347)
T ss_pred             EEEEccCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc---eeeehhccCc--eeEE
Confidence            999999998777777888999999865433  3333   9999999999998888887643   3555544322  4444


Q ss_pred             eCCCCccEEEEEEccCCceeEEEecc----cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC--eeEEEeccCcC---
Q 019349          153 PASTTKGSVLVYNVMELHSHCEIDAH----QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA--TKSYSFRRGTY---  223 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~~~~~~~~h----~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~--~~~~~~~~~~~---  223 (342)
                      +.  .+..|.+|+++++...  ++.+    +-.++||+.-+|....|.||-.|++ -+..+..+  +.-..|+-|..   
T Consensus       172 at--a~r~i~vynL~n~~te--~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv-~iq~id~~~~~~nFtFkCHR~~~~  246 (347)
T KOG0647|consen  172 AT--AERHIAVYNLENPPTE--FKRIESPLKWQTRCVACFQDKDGFALGSIEGRV-AIQYIDDPNPKDNFTFKCHRSTNS  246 (347)
T ss_pred             Ee--cCCcEEEEEcCCCcch--hhhhcCcccceeeEEEEEecCCceEeeeecceE-EEEecCCCCccCceeEEEeccCCC
Confidence            43  3677999999876432  2223    3458899999998888999999986 58888776  33334432221   


Q ss_pred             ----ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349          224 ----PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       224 ----~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~  262 (342)
                          --.|++|+|+|...   .|++++.||++.+||-+...+.
T Consensus       247 ~~~~VYaVNsi~FhP~hg---tlvTaGsDGtf~FWDkdar~kL  286 (347)
T KOG0647|consen  247 VNDDVYAVNSIAFHPVHG---TLVTAGSDGTFSFWDKDARTKL  286 (347)
T ss_pred             CCCceEEecceEeecccc---eEEEecCCceEEEecchhhhhh
Confidence                12488999999887   9999999999999997655443

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=3e-21  Score=153.97  Aligned_cols=239  Identities=14%  Similarity=0.180  Sum_probs=181.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEE--eCCCC-----cEEEEEeeCCEEEEEEcCCC----CeEEEEcCCCCCCCC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIF--DSSTG-----RLCYERAVGAFSIVEMLYSS----SLLAIVGAGEQPSLS   73 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~--d~~~~-----~~~~~~~~~~~~~~~~~~~~----~~~~~~~~g~~~~~~   73 (342)
                      +.+.|+|.+|+|+|.+||+|++|. +++.  |.++.     .+.+..+.+.+.-++++-++    ..++..+.      -
T Consensus        88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~ga------g  161 (350)
T KOG0641|consen   88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGA------G  161 (350)
T ss_pred             cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCC------C
Confidence            567899999999999999999876 5554  44332     45677777888777776443    23444444      3


Q ss_pred             CCeEEEEECCCCcEEEEEec-CCceEEEE-EcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCC-----ceEEEEeeCC
Q 019349           74 PRRLCLFNTTTGTALRELNF-LTSILAVR-LNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL-----KGLCAFSPSL  145 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~-~~~v~~i~-~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~  145 (342)
                      |-+|.+-|..+|+....+.. .+.|.++- |+.--++..+ |.+|++||++-..+++.+....+.     ..+.+++.+|
T Consensus       162 dc~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp  241 (350)
T KOG0641|consen  162 DCKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP  241 (350)
T ss_pred             cceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC
Confidence            88899999999998887764 45777764 4443333333 789999999988888887544332     3467788888


Q ss_pred             CccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe---ccCc
Q 019349          146 NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF---RRGT  222 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~---~~~~  222 (342)
                      .+.+|+++-  .|....+||++.+.+++.+..|...|.|+.|||...+|+|+|-|.. ||+=|++ |.+.+++   .-+.
T Consensus       242 sgrll~sg~--~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~-ikltdlq-gdla~el~~~vv~e  317 (350)
T KOG0641|consen  242 SGRLLASGH--ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMK-IKLTDLQ-GDLAHELPIMVVAE  317 (350)
T ss_pred             Ccceeeecc--CCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccce-EEEeecc-cchhhcCceEEEEe
Confidence            898888765  6889999999999999999999999999999999999999999987 6999986 3332222   1223


Q ss_pred             CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          223 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       223 ~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +..++..+.|+|..-   -+++.|.|.++.+|-+.
T Consensus       318 hkdk~i~~rwh~~d~---sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  318 HKDKAIQCRWHPQDF---SFISSSADKTATLWALN  349 (350)
T ss_pred             ccCceEEEEecCccc---eeeeccCcceEEEeccC
Confidence            445577789999886   78899999999999764

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.2e-22  Score=165.31  Aligned_cols=280  Identities=13%  Similarity=0.155  Sum_probs=201.1

Q ss_pred             eEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349           10 VFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      -.|+.||+-|.+||+|+.+| +.+||..+...  .+..|..++..++|..++..+++.+.       |+.|++||+..|.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~-------D~si~lwDl~~gs   98 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSR-------DWSIKLWDLLKGS   98 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecC-------CceeEEEeccCCC
Confidence            67999999999999999998 69999998854  35567788999999999999988876       9999999999999


Q ss_pred             EEEEEecCCceEEEEEcCC--eEEEEE--CCeEEEEECCCCceeeEEeCCCCC-ceE--EEEeeCCCccEEEEeCCCCcc
Q 019349           87 ALRELNFLTSILAVRLNKK--RLVIVL--REKTYIYDANTLAILDTIDTVPNL-KGL--CAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        87 ~~~~~~~~~~v~~i~~~~~--~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      ++..+.++++|....++|.  ..++++  +..-.+-++.+++. ..+...... ...  ....+++.+.++.++.  ..|
T Consensus        99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGt--sKG  175 (405)
T KOG1273|consen   99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGT--SKG  175 (405)
T ss_pred             ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce-eeccCCCccccccccccccccCCCCEEEEec--Ccc
Confidence            9999999999999999874  344444  66677777766321 122111111 011  1113456677888877  589


Q ss_pred             EEEEEEccCCceeEEEeccc-CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe---------eEEEeccCcCceeEEE
Q 019349          160 SVLVYNVMELHSHCEIDAHQ-APLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT---------KSYSFRRGTYPSTIFS  229 (342)
Q Consensus       160 ~i~iwd~~~~~~~~~~~~h~-~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~---------~~~~~~~~~~~~~v~~  229 (342)
                      .+.++|..+.+++..++--. ..|..|.|+..|++|+..+.|. +||.++++.--         ..++++.-.......+
T Consensus       176 kllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDR-vIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~  254 (405)
T KOG1273|consen  176 KLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDR-VIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKK  254 (405)
T ss_pred             eEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCc-eEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhh
Confidence            99999999999998887655 7899999999999999999996 68999986211         1122222122334678


Q ss_pred             EEEecCCCcccEEEEEeCC-CcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEE
Q 019349          230 LSFGQSMQFQDILVATSSS-GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVI  308 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (342)
                      ++||.||.   |+++++.. ..++||.-..+...+......      -......-|+|-.              ..|++.
T Consensus       255 ccfs~dge---Yv~a~s~~aHaLYIWE~~~GsLVKILhG~k------gE~l~DV~whp~r--------------p~i~si  311 (405)
T KOG1273|consen  255 CCFSGDGE---YVCAGSARAHALYIWEKSIGSLVKILHGTK------GEELLDVNWHPVR--------------PIIASI  311 (405)
T ss_pred             eeecCCcc---EEEeccccceeEEEEecCCcceeeeecCCc------hhheeecccccce--------------eeeeec
Confidence            89999999   88887754 469999877665544211100      0112233588765              345555


Q ss_pred             EeCCcEEEEEEecCCC
Q 019349          309 TYNGYFVEYIFSINNC  324 (342)
Q Consensus       309 ~~dg~v~~~~~~~~~~  324 (342)
                       ..|.+++|.....+.
T Consensus       312 -~sg~v~iw~~~~~en  326 (405)
T KOG1273|consen  312 -ASGVVYIWAVVQVEN  326 (405)
T ss_pred             -cCCceEEEEeecccc
Confidence             889999998765443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.91  E-value=1.4e-22  Score=185.48  Aligned_cols=234  Identities=14%  Similarity=0.190  Sum_probs=198.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      ..+.+..|-|.++++++|...| +.+||+.+..++..  .|.+.+-.++..++...++++++       |++|++||.+-
T Consensus       413 ~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~sa-------DktVkfWdf~l  485 (888)
T KOG0306|consen  413 GYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSA-------DKTVKFWDFKL  485 (888)
T ss_pred             ccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecC-------CcEEEEEeEEE
Confidence            3688999999999999999998 79999988866533  45677888888888888888876       99999999641


Q ss_pred             -----CcE--------EEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349           85 -----GTA--------LRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        85 -----~~~--------~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
                           |..        ..+++++..|.++.++|+.-+++.   |++++||=+.+.+..-++-.|.-  .+.++..+||..
T Consensus       486 ~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkL--PV~smDIS~DSk  563 (888)
T KOG0306|consen  486 VVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKL--PVLSMDISPDSK  563 (888)
T ss_pred             EeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeeccccc--ceeEEeccCCcC
Confidence                 111        145567789999999988655443   99999999999988777765544  577888888899


Q ss_pred             EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEE
Q 019349          149 FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  228 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~  228 (342)
                      .+++++  .|.+|+||-+.=|.|-.++-+|.+.|.++.|-|+..++.|+|.|+. +|-||-..-+++..+..+  ..+|+
T Consensus       564 livTgS--ADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~k-vKqWDg~kFe~iq~L~~H--~~ev~  638 (888)
T KOG0306|consen  564 LIVTGS--ADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGK-VKQWDGEKFEEIQKLDGH--HSEVW  638 (888)
T ss_pred             eEEecc--CCCceEEeccccchhhhhhhcccCceeEEEEcccceeEEEecCcce-EEeechhhhhhheeeccc--hheee
Confidence            999988  6899999999999999999999999999999999999999999997 699999888888888654  56799


Q ss_pred             EEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          229 SLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      |++.+|+|.   +++++|.|.+|++|.-..
T Consensus       639 cLav~~~G~---~vvs~shD~sIRlwE~td  665 (888)
T KOG0306|consen  639 CLAVSPNGS---FVVSSSHDKSIRLWERTD  665 (888)
T ss_pred             eeEEcCCCC---eEEeccCCceeEeeeccC
Confidence            999999999   999999999999998654

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.91  E-value=6e-23  Score=185.20  Aligned_cols=233  Identities=10%  Similarity=0.173  Sum_probs=175.5

Q ss_pred             EEEEc-CCCCEEEEEcCCcE-EEEeCCCCcEEE--------EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349           12 FVSFN-QDNSGFALSTKDGF-KIFDSSTGRLCY--------ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus        12 ~l~fs-~d~~~la~g~~~g~-~v~d~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .+..+ |.+++|.+|+.||+ ++|+.....-..        +.|..-+.-+.....++.++.++       .|-+|++|+
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~S-------sDtTVK~W~  101 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISAS-------SDTTVKVWN  101 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEec-------CCceEEEee
Confidence            34444 45667999999985 999875432211        11111122222233445555554       489999999


Q ss_pred             CCCC--cEEEEEe-cCCceEEEEE-cCCeEEEEE---CCeEEEEECCCC--ceeeEEeC------C-CCCceEEEEeeCC
Q 019349           82 TTTG--TALRELN-FLTSILAVRL-NKKRLVIVL---REKTYIYDANTL--AILDTIDT------V-PNLKGLCAFSPSL  145 (342)
Q Consensus        82 ~~~~--~~~~~~~-~~~~v~~i~~-~~~~~~~~~---d~~i~i~d~~~~--~~~~~~~~------~-~~~~~~~~~~~~~  145 (342)
                      ...+  -++.++. |...|.+++. .++...+++   |+.|++||++++  +++.++..      . .....+.+++-++
T Consensus       102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~  181 (735)
T KOG0308|consen  102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ  181 (735)
T ss_pred             cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence            9776  3555554 4568999998 666666655   889999999987  34433321      1 2345688888888


Q ss_pred             CccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCce
Q 019349          146 NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  225 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~  225 (342)
                      .+..++.+|  ..+.+++||.++.+.+..+.+|...|.++..++||+.++++|.||+ ||+||+....++.++..+  ..
T Consensus       182 t~t~ivsGg--tek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgt-IrlWdLgqQrCl~T~~vH--~e  256 (735)
T KOG0308|consen  182 TGTIIVSGG--TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGT-IRLWDLGQQRCLATYIVH--KE  256 (735)
T ss_pred             cceEEEecC--cccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCce-EEeeeccccceeeeEEec--cC
Confidence            887777666  6899999999999999999999999999999999999999999997 699999999999998654  33


Q ss_pred             eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      .|+++.-+|+-.   .+.+|+.||.|..=|++.+
T Consensus       257 ~VWaL~~~~sf~---~vYsG~rd~~i~~Tdl~n~  287 (735)
T KOG0308|consen  257 GVWALQSSPSFT---HVYSGGRDGNIYRTDLRNP  287 (735)
T ss_pred             ceEEEeeCCCcc---eEEecCCCCcEEecccCCc
Confidence            499999999988   9999999999999999875

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.91  E-value=1.9e-21  Score=161.55  Aligned_cols=243  Identities=15%  Similarity=0.215  Sum_probs=176.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      .++...|.++.|+|.++.|++++.|| +++|+.....+..... +..+++.+.|....-+++|+      .|+.|+.+|+
T Consensus        10 npP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~~~~~~G~------~dg~vr~~Dl   82 (323)
T KOG1036|consen   10 NPPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADESTIVTGG------LDGQVRRYDL   82 (323)
T ss_pred             CCChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCCceEEEec------cCceEEEEEe
Confidence            35678899999999999999999988 6999998775543332 23334455555545555555      5999999999


Q ss_pred             CCCcEEEEEecCCceEEEEEcC--CeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349           83 TTGTALRELNFLTSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      .++....--.+...|++|...+  +.++.++ |++|++||.+.......+..   +..+.+++..++  .|+++.  .+.
T Consensus        83 n~~~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~---~kkVy~~~v~g~--~LvVg~--~~r  155 (323)
T KOG1036|consen   83 NTGNEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ---GKKVYCMDVSGN--RLVVGT--SDR  155 (323)
T ss_pred             cCCcceeeccCCCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc---CceEEEEeccCC--EEEEee--cCc
Confidence            9988777777888999999874  3344444 99999999987655555543   346778877655  555555  478


Q ss_pred             EEEEEEccCCceeEEE--ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC----eeEEEeccCcC-------cee
Q 019349          160 SVLVYNVMELHSHCEI--DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA----TKSYSFRRGTY-------PST  226 (342)
Q Consensus       160 ~i~iwd~~~~~~~~~~--~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~----~~~~~~~~~~~-------~~~  226 (342)
                      .|.+||+++.....+.  ..-+-.+.||++-|++.=.|.+|-||++ -+=.+...    .+.+.|+-|..       -.+
T Consensus       156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRV-avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yP  234 (323)
T KOG1036|consen  156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRV-AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYP  234 (323)
T ss_pred             eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceE-EEEccCCchHHhhhceeEEeeecccCCceEEEE
Confidence            8999999987644322  2345678999999988889999999985 34444333    23344543211       125


Q ss_pred             EEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCC
Q 019349          227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR  264 (342)
Q Consensus       227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~  264 (342)
                      |++|+|+|-..   .||+|+.||.|.+||+...+..+.
T Consensus       235 VNai~Fhp~~~---tfaTgGsDG~V~~Wd~~~rKrl~q  269 (323)
T KOG1036|consen  235 VNAIAFHPIHG---TFATGGSDGIVNIWDLFNRKRLKQ  269 (323)
T ss_pred             eceeEeccccc---eEEecCCCceEEEccCcchhhhhh
Confidence            99999999987   899999999999999987766543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.90  E-value=1.2e-21  Score=166.64  Aligned_cols=234  Identities=15%  Similarity=0.191  Sum_probs=176.3

Q ss_pred             CCCCCCeEEEEEcCCC---CEEEEEcCC-cEEEEeCCCCcEE------EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCC
Q 019349            4 QSSSYPVFFVSFNQDN---SGFALSTKD-GFKIFDSSTGRLC------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~---~~la~g~~~-g~~v~d~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (342)
                      ..+.++|.++++--..   ..|++++.| .+++|-++.++..      ...|...+..+....++..++..+       .
T Consensus       141 ~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS-------~  213 (423)
T KOG0313|consen  141 VGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGS-------W  213 (423)
T ss_pred             ecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeec-------c
Confidence            4678899977775322   247777666 4799988877432      225667777777777776665554       5


Q ss_pred             CCeEEEEECCCC-------------------------cEEEEEe-cCCceEEEEEcCCeEEE-EE-CCeEEEEECCCCce
Q 019349           74 PRRLCLFNTTTG-------------------------TALRELN-FLTSILAVRLNKKRLVI-VL-REKTYIYDANTLAI  125 (342)
Q Consensus        74 d~~i~iwd~~~~-------------------------~~~~~~~-~~~~v~~i~~~~~~~~~-~~-d~~i~i~d~~~~~~  125 (342)
                      |++|++|+..+.                         .++..+. |..+|.++.|.+...+. ++ |.+|+.||+.+++.
T Consensus       214 D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~  293 (423)
T KOG0313|consen  214 DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGL  293 (423)
T ss_pred             cceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcCCCceEeecccceEEEEEeecccc
Confidence            999999993211                         1222222 34578889887754433 44 99999999999988


Q ss_pred             eeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc---eeEEEecccCCeeEEEECCCC-CEEEEEeCCC
Q 019349          126 LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH---SHCEIDAHQAPLAAIVLSSNG-MYIATASEQG  201 (342)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~---~~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg  201 (342)
                      .-++.+   +..+.+++..|...+||+++  .|..|++||.+++.   ..+++.+|++.|.++.|+|.. .+|++||.|+
T Consensus       294 ~~~~~~---~ksl~~i~~~~~~~Ll~~gs--sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~  368 (423)
T KOG0313|consen  294 KSTLTT---NKSLNCISYSPLSKLLASGS--SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDN  368 (423)
T ss_pred             eeeeec---CcceeEeecccccceeeecC--CCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCC
Confidence            877754   34577888888888888777  58999999998764   457788999999999999954 6699999999


Q ss_pred             cEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349          202 TIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       202 ~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      + +|+||+++.+ .++.+.++  ..+|.++.|+..+    ++++|+.|++|+|+.-
T Consensus       369 t-~klWDvRS~k~plydI~~h--~DKvl~vdW~~~~----~IvSGGaD~~l~i~~~  417 (423)
T KOG0313|consen  369 T-VKLWDVRSTKAPLYDIAGH--NDKVLSVDWNEGG----LIVSGGADNKLRIFKG  417 (423)
T ss_pred             e-EEEEEeccCCCcceeeccC--CceEEEEeccCCc----eEEeccCcceEEEecc
Confidence            8 5999999887 88888654  6679999998654    7999999999999964

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.90  E-value=1.7e-22  Score=185.56  Aligned_cols=240  Identities=13%  Similarity=0.164  Sum_probs=171.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCc----EEEE-Eee--CCEEE--EEE-cCCCCeEEEEcCCCCCCCCCCe
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR----LCYE-RAV--GAFSI--VEM-LYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~----~~~~-~~~--~~~~~--~~~-~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      +...+.|+.+++-..+++++..-++||-+++..    +... ...  ....+  |.| ....+++++++.       .+.
T Consensus        39 k~~~nAIs~nr~~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~-------nG~  111 (839)
T KOG0269|consen   39 KAKANAISVNRDINQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCST-------NGV  111 (839)
T ss_pred             ccccceEeecCCcceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecC-------CCc
Confidence            346778899999999999988888999776541    1111 100  11111  222 234577888875       789


Q ss_pred             EEEEECCC---CcEEEEEe-cCCceEEEEEcC---CeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349           77 LCLFNTTT---GTALRELN-FLTSILAVRLNK---KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        77 i~iwd~~~---~~~~~~~~-~~~~v~~i~~~~---~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
                      |.+||+..   .+.+..+. +.-.+..+.|+.   +.++.++ |+.|++||++..+...++........-+.+++.++. 
T Consensus       112 i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~-  190 (839)
T KOG0269|consen  112 ISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGN-  190 (839)
T ss_pred             EEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCc-
Confidence            99999976   44444444 344889999865   3444444 899999999988777666553344445667776643 


Q ss_pred             EEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee--EEEeccCcCce
Q 019349          149 FLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRRGTYPS  225 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~--~~~~~~~~~~~  225 (342)
                      .+++..  ..|.+++||++... +...+.+|.++|.|+.|+|++.+|||||.|++ |||||+.+.+.  +.++.   ..+
T Consensus       191 ~F~s~~--dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~-vkiWd~t~~~~~~~~tIn---Tia  264 (839)
T KOG0269|consen  191 KFASIH--DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKM-VKIWDMTDSRAKPKHTIN---TIA  264 (839)
T ss_pred             eEEEec--CCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCcc-EEEEeccCCCccceeEEe---ecc
Confidence            444443  58999999998764 57788899999999999999999999999987 69999976543  33332   246


Q ss_pred             eEEEEEEecCCCcccEEEEEeC--CCcEEEEecCCCCCC
Q 019349          226 TIFSLSFGQSMQFQDILVATSS--SGSLHVFSPGFAINQ  262 (342)
Q Consensus       226 ~v~~l~fs~d~~~~~~l~~~s~--dg~i~vwd~~~~~~~  262 (342)
                      +|.++.|-|+..  +.||+++.  |-.|+|||++.+--+
T Consensus       265 pv~rVkWRP~~~--~hLAtcsmv~dtsV~VWDvrRPYIP  301 (839)
T KOG0269|consen  265 PVGRVKWRPARS--YHLATCSMVVDTSVHVWDVRRPYIP  301 (839)
T ss_pred             eeeeeeeccCcc--chhhhhhccccceEEEEeecccccc
Confidence            799999999987  47887765  567999999987654

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.90  E-value=9.8e-22  Score=178.58  Aligned_cols=271  Identities=10%  Similarity=0.167  Sum_probs=193.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEE----EEeeCCEEE-EEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY----ERAVGAFSI-VEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      ...|.+.|..+++.+.. ++++++.|+ +++|+-...+.+.    ..+.+-+.. ++.....+...++++      .|.+
T Consensus        10 l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~------~D~~   82 (745)
T KOG0301|consen   10 LEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGG------MDTT   82 (745)
T ss_pred             eccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeec------ccce
Confidence            34688889999988665 677777665 7999965443332    112222222 233332333344444      6999


Q ss_pred             EEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           77 LCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        77 i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      +.+|...+..++..+. |.+.|.++....+..++.+  |.++++|-...  +...++.  |...+.++..-|++ .++++
T Consensus        83 i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~~iSgSWD~TakvW~~~~--l~~~l~g--H~asVWAv~~l~e~-~~vTg  157 (745)
T KOG0301|consen   83 IIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGTLISGSWDSTAKVWRIGE--LVYSLQG--HTASVWAVASLPEN-TYVTG  157 (745)
T ss_pred             EEEEecCCCCchhhhhccccceeeeecCCcCceEecccccceEEecchh--hhcccCC--cchheeeeeecCCC-cEEec
Confidence            9999999999998875 5569999998777665544  99999998754  3334444  44467777777776 45555


Q ss_pred             CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs  233 (342)
                      +  .|.+|++|.-  ++.+++|.+|.+-|+.+++-+++ .+++++.||. ||+|++ +|+.+.++..  |...|++++..
T Consensus       158 s--aDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~-Ir~w~~-~ge~l~~~~g--htn~vYsis~~  228 (745)
T KOG0301|consen  158 S--ADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGS-IRLWDL-DGEVLLEMHG--HTNFVYSISMA  228 (745)
T ss_pred             c--CcceeeeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCce-EEEEec-cCceeeeeec--cceEEEEEEec
Confidence            5  6899999986  66889999999999999998875 5889999996 699999 7888888753  45679999966


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCc
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY  313 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  313 (342)
                      +++.   .++++++|++++||+...-..             .+.....++|+...           -.+.-|++||+||.
T Consensus       229 ~~~~---~Ivs~gEDrtlriW~~~e~~q-------------~I~lPttsiWsa~~-----------L~NgDIvvg~SDG~  281 (745)
T KOG0301|consen  229 LSDG---LIVSTGEDRTLRIWKKDECVQ-------------VITLPTTSIWSAKV-----------LLNGDIVVGGSDGR  281 (745)
T ss_pred             CCCC---eEEEecCCceEEEeecCceEE-------------EEecCccceEEEEE-----------eeCCCEEEeccCce
Confidence            6666   899999999999999762111             11112235777643           11246999999999


Q ss_pred             EEEEEEec
Q 019349          314 FVEYIFSI  321 (342)
Q Consensus       314 v~~~~~~~  321 (342)
                      ||+|..+.
T Consensus       282 VrVfT~~k  289 (745)
T KOG0301|consen  282 VRVFTVDK  289 (745)
T ss_pred             EEEEEecc
Confidence            99998763

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=5.2e-22  Score=160.74  Aligned_cols=237  Identities=13%  Similarity=0.173  Sum_probs=171.4

Q ss_pred             CCCCeEEEEEcCCCC-EEEEEcCCc-EEEEeCCCC-cE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            6 SSYPVFFVSFNQDNS-GFALSTKDG-FKIFDSSTG-RL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~-~la~g~~~g-~~v~d~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ....+..++|++... .+++++.|| +++||+... ..  .++.|...+..+.+....+...+.+.      .|++||+|
T Consensus        59 ~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsS------WD~TiKLW  132 (311)
T KOG0277|consen   59 TEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSS------WDGTIKLW  132 (311)
T ss_pred             cccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeec------cCCceEee
Confidence            346788999998664 455565565 799995432 22  24445567777777665555555553      69999999


Q ss_pred             ECCCCcEEEEEecC-CceEEEEEcCC---eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC-CccEEEEeC
Q 019349           81 NTTTGTALRELNFL-TSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL-NACFLAVPA  154 (342)
Q Consensus        81 d~~~~~~~~~~~~~-~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~  154 (342)
                      +...++.+.++..+ .-|....|+|.   .+..++ |+.+++||++.......+..|..  .+.+..++. +...+++++
T Consensus       133 ~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~--Eil~cdw~ky~~~vl~Tg~  210 (311)
T KOG0277|consen  133 DPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNS--EILCCDWSKYNHNVLATGG  210 (311)
T ss_pred             cCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccc--eeEeecccccCCcEEEecC
Confidence            99999989887654 47889999774   344444 88999999986533334666553  344444443 445777776


Q ss_pred             CCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349          155 STTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  232 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f  232 (342)
                        .|+.|++||+++.+ ++..+.+|.-+|..|+|||- ...||++|-|-+ +|+||...+.-..+-.. +|..-+..+.|
T Consensus       211 --vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT-~riw~~~~~ds~~e~~~-~HtEFv~g~Dw  286 (311)
T KOG0277|consen  211 --VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMT-VRIWDPERQDSAIETVD-HHTEFVCGLDW  286 (311)
T ss_pred             --CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccce-EEecccccchhhhhhhh-ccceEEecccc
Confidence              69999999998765 67888999999999999994 478999999987 59999985543322222 23445888999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEec
Q 019349          233 GQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       233 s~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      |+-..  .++|+++.|+.++||+-
T Consensus       287 s~~~~--~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  287 SLFDP--GQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccccC--ceeeecccccceeeecc
Confidence            98654  29999999999999983

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.89  E-value=3.5e-21  Score=159.96  Aligned_cols=227  Identities=16%  Similarity=0.184  Sum_probs=172.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      .+..++++++|.++.+ +++|+-+| ++++|++++... ...|..++.++...+..+.++..+       .|++|++||.
T Consensus        52 ~~~~plL~c~F~d~~~-~~~G~~dg~vr~~Dln~~~~~~igth~~~i~ci~~~~~~~~vIsgs-------WD~~ik~wD~  123 (323)
T KOG1036|consen   52 KHGAPLLDCAFADEST-IVTGGLDGQVRRYDLNTGNEDQIGTHDEGIRCIEYSYEVGCVISGS-------WDKTIKFWDP  123 (323)
T ss_pred             ecCCceeeeeccCCce-EEEeccCceEEEEEecCCcceeeccCCCceEEEEeeccCCeEEEcc-------cCccEEEEec
Confidence            4678999999998655 66666666 699999988543 334557777777766566654443       6999999999


Q ss_pred             CCCcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEE
Q 019349           83 TTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (342)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i  161 (342)
                      ++...+..+.....|.++....+.++++. +..+.+||+++.....+.....-...+-+++..|++.-.++++  .+|.|
T Consensus       124 R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sS--ieGRV  201 (323)
T KOG1036|consen  124 RNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSS--IEGRV  201 (323)
T ss_pred             cccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEe--ecceE
Confidence            98777888887889999999999999966 8899999999875544333222223344555555555555555  68999


Q ss_pred             EEEEccCC----ceeEEEeccc---------CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEE
Q 019349          162 LVYNVMEL----HSHCEIDAHQ---------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  228 (342)
Q Consensus       162 ~iwd~~~~----~~~~~~~~h~---------~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~  228 (342)
                      .+=.+...    +....|++|.         -||++|+|+|--..||||+.||.+ .+||+.+.+.+.++.+-  +..|.
T Consensus       202 avE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V-~~Wd~~~rKrl~q~~~~--~~SI~  278 (323)
T KOG1036|consen  202 AVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIV-NIWDLFNRKRLKQLAKY--ETSIS  278 (323)
T ss_pred             EEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceE-EEccCcchhhhhhccCC--CCceE
Confidence            98766554    3345677775         379999999998999999999965 69999999998888532  45699


Q ss_pred             EEEEecCCCcccEEEEEeC
Q 019349          229 SLSFGQSMQFQDILVATSS  247 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~s~  247 (342)
                      +++|+.||.   .||.++.
T Consensus       279 slsfs~dG~---~LAia~s  294 (323)
T KOG1036|consen  279 SLSFSMDGS---LLAIASS  294 (323)
T ss_pred             EEEeccCCC---eEEEEec
Confidence            999999999   9999875

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=7.8e-20  Score=161.61  Aligned_cols=237  Identities=14%  Similarity=0.112  Sum_probs=168.5

Q ss_pred             CCeEEEEEcCCCCEE-EEEcCCc-EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            8 YPVFFVSFNQDNSGF-ALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         8 ~~V~~l~fs~d~~~l-a~g~~~g-~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      ..+.+++|+|+++.+ +++..++ +++||..+++....... .....+.+.++.+.+++.+.      .++.|++||+++
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~------~~~~l~~~d~~~  104 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPELFALHPNGKILYIANE------DDNLVTVIDIET  104 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCccEEEECCCCCEEEEEcC------CCCeEEEEECCC
Confidence            346789999999976 4555554 79999998876654332 23445566666676665554      478999999999


Q ss_pred             CcEEEEEecCCceEEEEEcCCeEEEE--E-C-CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349           85 GTALRELNFLTSILAVRLNKKRLVIV--L-R-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (342)
Q Consensus        85 ~~~~~~~~~~~~v~~i~~~~~~~~~~--~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~  160 (342)
                      ++.+..+.....+.++.++++...++  . + ..+.+||..+++....+.....   ...+++++++..+++++. .+|.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~~~-~~~~  180 (300)
T TIGR03866       105 RKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR---PRFAEFTADGKELWVSSE-IGGT  180 (300)
T ss_pred             CeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC---ccEEEECCCCCEEEEEcC-CCCE
Confidence            88888777666678899988754333  3 3 3578889988877655543322   234566777777766553 5899


Q ss_pred             EEEEEccCCceeEEEeccc-----C--CeeEEEECCCCCEEEEE-eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349          161 VLVYNVMELHSHCEIDAHQ-----A--PLAAIVLSSNGMYIATA-SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  232 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~-----~--~v~~i~~s~dg~~lat~-s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f  232 (342)
                      |.+||+.+++.+..+..+.     .  ....++|+|+|++++.+ +.+++ +.+||+++++.+..+..+   ..+.+++|
T Consensus       181 v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~-i~v~d~~~~~~~~~~~~~---~~~~~~~~  256 (300)
T TIGR03866       181 VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANR-VAVVDAKTYEVLDYLLVG---QRVWQLAF  256 (300)
T ss_pred             EEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCe-EEEEECCCCcEEEEEEeC---CCcceEEE
Confidence            9999999988776664321     1  23468899999986554 44555 579999988877655322   34889999


Q ss_pred             ecCCCcccEEEEE-eCCCcEEEEecCCCCC
Q 019349          233 GQSMQFQDILVAT-SSSGSLHVFSPGFAIN  261 (342)
Q Consensus       233 s~d~~~~~~l~~~-s~dg~i~vwd~~~~~~  261 (342)
                      +|+++   +|+++ +.+|+|++||+++.+.
T Consensus       257 ~~~g~---~l~~~~~~~~~i~v~d~~~~~~  283 (300)
T TIGR03866       257 TPDEK---YLLTTNGVSNDVSVIDVAALKV  283 (300)
T ss_pred             CCCCC---EEEEEcCCCCeEEEEECCCCcE
Confidence            99999   88876 4689999999988764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.89  E-value=1.6e-20  Score=178.62  Aligned_cols=286  Identities=15%  Similarity=0.160  Sum_probs=208.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEc--CC-cEEEEeCCCCc------------E--EEEEeeCCEEEEEEcCCCCeEEEEcCCCC
Q 019349            7 SYPVFFVSFNQDNSGFALST--KD-GFKIFDSSTGR------------L--CYERAVGAFSIVEMLYSSSLLAIVGAGEQ   69 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~--~~-g~~v~d~~~~~------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   69 (342)
                      +..|.+++.+|||..+|+|+  .| ++++|+.+.--            .  ....|.+.+.++.|.+++.++|..+.   
T Consensus        13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD---   89 (942)
T KOG0973|consen   13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD---   89 (942)
T ss_pred             CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC---
Confidence            34699999999999999998  44 46899865431            1  12235578888999999999887664   


Q ss_pred             CCCCCCeEEEEECCC----------C--------cEEEEE-ecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceee
Q 019349           70 PSLSPRRLCLFNTTT----------G--------TALREL-NFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILD  127 (342)
Q Consensus        70 ~~~~d~~i~iwd~~~----------~--------~~~~~~-~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~  127 (342)
                          |+.|.||+...          |        +++..+ .+.+.|.+++|+|+..++++   |++|.|||..+.+.+.
T Consensus        90 ----D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~  165 (942)
T KOG0973|consen   90 ----DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLK  165 (942)
T ss_pred             ----cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeee
Confidence                89999999772          1        122223 24669999999998777666   9999999999998888


Q ss_pred             EEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEeccc------CCeeEEEECCCCCEEEEEeCC-
Q 019349          128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ------APLAAIVLSSNGMYIATASEQ-  200 (342)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~------~~v~~i~~s~dg~~lat~s~d-  200 (342)
                      .++.|..  .+-.++++|-|+++|+-+  .|++|+||++.+-...+.+.++-      .-+.-+.|||||++|++.-.= 
T Consensus       166 vl~~H~s--~VKGvs~DP~Gky~ASqs--dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n  241 (942)
T KOG0973|consen  166 VLRGHQS--LVKGVSWDPIGKYFASQS--DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVN  241 (942)
T ss_pred             eeecccc--cccceEECCccCeeeeec--CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhcc
Confidence            8887765  355677888899999998  69999999987766666665543      346789999999999997321 


Q ss_pred             --CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC------C--C-ccc-----EEEEEeCCCcEEEEecCCCCCCCC
Q 019349          201 --GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS------M--Q-FQD-----ILVATSSSGSLHVFSPGFAINQRR  264 (342)
Q Consensus       201 --g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d------~--~-~~~-----~l~~~s~dg~i~vwd~~~~~~~~~  264 (342)
                        +..+.|.+-.+.+.-..|-.|  .+++.+++|+|.      .  . .++     .+|+||.|++|.||....+++.-.
T Consensus       242 ~~~~~~~IieR~tWk~~~~LvGH--~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~v  319 (942)
T KOG0973|consen  242 GGKSTIAIIERGTWKVDKDLVGH--SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFV  319 (942)
T ss_pred             CCcceeEEEecCCceeeeeeecC--CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhh
Confidence              234567776666655666433  557999999982      1  1 001     689999999999999866655321


Q ss_pred             CCCcccccccccccc-ccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCCe
Q 019349          265 GGRTSSILGSILPES-VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCE  326 (342)
Q Consensus       265 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~~  326 (342)
                      .       -.+.... ....|+|++              -.|+++|.||+|..+.+.+++-++
T Consensus       320 i-------~~lf~~SI~DmsWspdG--------------~~LfacS~DGtV~~i~Fee~ElG~  361 (942)
T KOG0973|consen  320 I-------HNLFNKSIVDMSWSPDG--------------FSLFACSLDGTVALIHFEEKELGV  361 (942)
T ss_pred             h-------hhhhcCceeeeeEcCCC--------------CeEEEEecCCeEEEEEcchHHhCc
Confidence            0       0011112 234788877              679999999999999998776553

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.89  E-value=2.3e-19  Score=158.53  Aligned_cols=267  Identities=10%  Similarity=0.023  Sum_probs=177.5

Q ss_pred             CEEEEEcCCc-EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCce
Q 019349           20 SGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI   97 (342)
Q Consensus        20 ~~la~g~~~g-~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v   97 (342)
                      ..+++++.++ +++||+.+++....... .....+.+.++...+++++.      .++.|++||..+++.+..+.....+
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~~~~~~~~   75 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCAS------DSDTIQVIDLATGEVIGTLPSGPDP   75 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEeccCCCCc
Confidence            4577777666 69999998876554432 22344566666666655554      4789999999999888777655556


Q ss_pred             EEEEEcCCe--EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeE
Q 019349           98 LAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC  173 (342)
Q Consensus        98 ~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~  173 (342)
                      ..+.++++.  ++++.  ++.+++||+.+.+.+..+.....   ...++++|++..++++.. ....+.+||..+++.+.
T Consensus        76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~---~~~~~~~~dg~~l~~~~~-~~~~~~~~d~~~~~~~~  151 (300)
T TIGR03866        76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE---PEGMAVSPDGKIVVNTSE-TTNMAHFIDTKTYEIVD  151 (300)
T ss_pred             cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC---cceEEECCCCCEEEEEec-CCCeEEEEeCCCCeEEE
Confidence            778887764  33433  67999999998887777754322   344566778888887763 23467888998887765


Q ss_pred             EEecccCCeeEEEECCCCCEEEEEe-CCCcEEEEEEcCCCeeEEEeccCc---C--ceeEEEEEEecCCCcccEEEE-Ee
Q 019349          174 EIDAHQAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATKSYSFRRGT---Y--PSTIFSLSFGQSMQFQDILVA-TS  246 (342)
Q Consensus       174 ~~~~h~~~v~~i~~s~dg~~lat~s-~dg~~irlwd~~~~~~~~~~~~~~---~--~~~v~~l~fs~d~~~~~~l~~-~s  246 (342)
                      .+... ..+.+++|+|+|++|+.++ .+|. +++||+.+++.+..+....   .  ......++|+|+++   ++++ .+
T Consensus       152 ~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~-v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~---~~~~~~~  226 (300)
T TIGR03866       152 NVLVD-QRPRFAEFTADGKELWVSSEIGGT-VSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGK---TAFVALG  226 (300)
T ss_pred             EEEcC-CCccEEEECCCCCEEEEEcCCCCE-EEEEEcCcceeeeeeeecccccccccCCccceEECCCCC---EEEEEcC
Confidence            55433 3457899999999886554 5776 5899999998776653211   0  11245689999998   6544 45


Q ss_pred             CCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE-eCCcEEEEEEecCC
Q 019349          247 SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT-YNGYFVEYIFSINN  323 (342)
Q Consensus       247 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~~~~~~~~~  323 (342)
                      .+++|++||+++.+......     .+   .......|              .+++..|++++ .+|.|++|++...+
T Consensus       227 ~~~~i~v~d~~~~~~~~~~~-----~~---~~~~~~~~--------------~~~g~~l~~~~~~~~~i~v~d~~~~~  282 (300)
T TIGR03866       227 PANRVAVVDAKTYEVLDYLL-----VG---QRVWQLAF--------------TPDEKYLLTTNGVSNDVSVIDVAALK  282 (300)
T ss_pred             CCCeEEEEECCCCcEEEEEE-----eC---CCcceEEE--------------CCCCCEEEEEcCCCCeEEEEECCCCc
Confidence            67789999987654321100     00   00111233              34447788764 59999999877633

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=8e-21  Score=176.41  Aligned_cols=246  Identities=11%  Similarity=0.100  Sum_probs=177.4

Q ss_pred             EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC--------------------------------Cc-----
Q 019349           44 RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT--------------------------------GT-----   86 (342)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~--------------------------------~~-----   86 (342)
                      .+.+.|-.+.+.+++.++|.+|-       |+.|+||.+..                                ..     
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGe-------D~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGE-------DGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCC-------CceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            45677888888899999987764       99999999765                                00     


Q ss_pred             -----------------------EEEEE-ecCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEE
Q 019349           87 -----------------------ALREL-NFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCA  140 (342)
Q Consensus        87 -----------------------~~~~~-~~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  140 (342)
                                             ++..+ .|...|+++.|+++++++.+  |++|++|++....+++.|.   ++..+.|
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~---HndfVTc  414 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS---HNDFVTC  414 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe---cCCeeEE
Confidence                                   00000 01236899999998877766  9999999999999998884   3456777


Q ss_pred             EeeCC-CccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349          141 FSPSL-NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       141 ~~~~~-~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~  219 (342)
                      ++++| |..++++++  -||.|+||++...+.+.-...| .-|++++|.|||+..+.|+-+|.+ +++++...+....+.
T Consensus       415 VaFnPvDDryFiSGS--LD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C-~fY~t~~lk~~~~~~  490 (712)
T KOG0283|consen  415 VAFNPVDDRYFISGS--LDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYC-RFYDTEGLKLVSDFH  490 (712)
T ss_pred             EEecccCCCcEeecc--cccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEE-EEEEccCCeEEEeee
Confidence            77776 445666655  6999999999887765544444 779999999999999999999985 799998777655442


Q ss_pred             cCcC------ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceee
Q 019349          220 RGTY------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLR  293 (342)
Q Consensus       220 ~~~~------~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (342)
                      -..+      ..+|+.+.|.|...  +.++++++|..|+|||.++.....+.+.....     ..+....          
T Consensus       491 I~~~~~Kk~~~~rITG~Q~~p~~~--~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~-----~SQ~~As----------  553 (712)
T KOG0283|consen  491 IRLHNKKKKQGKRITGLQFFPGDP--DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNT-----SSQISAS----------  553 (712)
T ss_pred             EeeccCccccCceeeeeEecCCCC--CeEEEecCCCceEEEeccchhhhhhhcccccC-----Ccceeee----------
Confidence            1111      22699999998665  36999999999999999766544332111110     0011111          


Q ss_pred             eccCCCccccEEEEEEeCCcEEEEEEecCCC
Q 019349          294 NAFPAGVKRASVSVITYNGYFVEYIFSINNC  324 (342)
Q Consensus       294 ~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~  324 (342)
                          |..++++|+++|.|..||+|.++....
T Consensus       554 ----fs~Dgk~IVs~seDs~VYiW~~~~~~~  580 (712)
T KOG0283|consen  554 ----FSSDGKHIVSASEDSWVYIWKNDSFNS  580 (712)
T ss_pred             ----EccCCCEEEEeecCceEEEEeCCCCcc
Confidence                233558999999999999999866543

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=1.1e-20  Score=164.50  Aligned_cols=240  Identities=15%  Similarity=0.223  Sum_probs=182.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE-E---E----------------EeeCCEEEEEEcCCCCeEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC-Y---E----------------RAVGAFSIVEMLYSSSLLAI   63 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~-~---~----------------~~~~~~~~~~~~~~~~~~~~   63 (342)
                      .|.-+|.|++++||+++..+++.++ +.-|++.+++.. +   .                .|...+..+++..++.++++
T Consensus       140 ~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgkylat  219 (479)
T KOG0299|consen  140 KHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGKYLAT  219 (479)
T ss_pred             cccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCcEEEe
Confidence            4566899999999999999998887 477988777522 1   0                12234555666777777776


Q ss_pred             EcCCCCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEc--CCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEE
Q 019349           64 VGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLN--KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC  139 (342)
Q Consensus        64 ~~~g~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~--~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (342)
                      .+.       |+.|.|||..+.+.+..+. +...|.+++|.  ++.++.++ |..+++|++.....+.++-.|  +..+.
T Consensus       220 gg~-------d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGH--qd~v~  290 (479)
T KOG0299|consen  220 GGR-------DRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGH--QDGVL  290 (479)
T ss_pred             cCC-------CceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCC--cccee
Confidence            664       8999999999999998865 45689999984  45666666 999999999988777776544  44677


Q ss_pred             EEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       140 ~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~  219 (342)
                      ++....-++.+.+++  .|.++++|++.. +....+.+|.+.+-|++|-.+ ..++|||.+|. |.||++...+.+...+
T Consensus       291 ~IdaL~reR~vtVGg--rDrT~rlwKi~e-esqlifrg~~~sidcv~~In~-~HfvsGSdnG~-IaLWs~~KKkplf~~~  365 (479)
T KOG0299|consen  291 GIDALSRERCVTVGG--RDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGS-IALWSLLKKKPLFTSR  365 (479)
T ss_pred             eechhcccceEEecc--ccceeEEEeccc-cceeeeeCCCCCeeeEEEecc-cceeeccCCce-EEEeeecccCceeEee
Confidence            666655555555555  589999999943 334457789999999999765 67999999998 5799999998887765


Q ss_pred             cCcC--ce--------eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          220 RGTY--PS--------TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       220 ~~~~--~~--------~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      ..+.  +.        -|++|+..|...   ++|+||.+|.|++|.++.+..
T Consensus       366 ~AHgv~~~~~~~~~~~Witsla~i~~sd---L~asGS~~G~vrLW~i~~g~r  414 (479)
T KOG0299|consen  366 LAHGVIPELDPVNGNFWITSLAVIPGSD---LLASGSWSGCVRLWKIEDGLR  414 (479)
T ss_pred             ccccccCCccccccccceeeeEecccCc---eEEecCCCCceEEEEecCCcc
Confidence            3321  11        488999999887   999999999999999987743

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=3.8e-21  Score=167.41  Aligned_cols=237  Identities=15%  Similarity=0.239  Sum_probs=188.7

Q ss_pred             CCCeEEEEEcCCCC-EEEEEcCCcE-EEEeCCCCcEEE-----EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            7 SYPVFFVSFNQDNS-GFALSTKDGF-KIFDSSTGRLCY-----ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         7 ~~~V~~l~fs~d~~-~la~g~~~g~-~v~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      ..||.+.+|.|+|. .+++++-.-+ ..||+.+.++..     ......+...++.+.++++++.|.       .+.|.+
T Consensus       257 ~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~-------~G~I~l  329 (514)
T KOG2055|consen  257 KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN-------NGHIHL  329 (514)
T ss_pred             cCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc-------CceEEe
Confidence            46899999999999 6777776654 999998886542     222244556677889999998875       799999


Q ss_pred             EECCCCcEEEEEecCCceEEEEEcCCe-EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           80 FNTTTGTALRELNFLTSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      .-.++++.+.++..++.|.+++|+.+. .+++.  +|.|++||++...+++.+..... ..-..++++.++.++|+++  
T Consensus       330 LhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~-v~gts~~~S~ng~ylA~GS--  406 (514)
T KOG2055|consen  330 LHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGS-VHGTSLCISLNGSYLATGS--  406 (514)
T ss_pred             ehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCc-cceeeeeecCCCceEEecc--
Confidence            999999999999999999999997653 22333  88999999999999988865433 3445667777888999887  


Q ss_pred             CccEEEEEEcc------CCceeEEEecccCCeeEEEECCCCCEEEEEeC--CCcEEEEEEcCCCeeEEEeccCc-CceeE
Q 019349          157 TKGSVLVYNVM------ELHSHCEIDAHQAPLAAIVLSSNGMYIATASE--QGTIIRVFLVSEATKSYSFRRGT-YPSTI  227 (342)
Q Consensus       157 ~~g~i~iwd~~------~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~--dg~~irlwd~~~~~~~~~~~~~~-~~~~v  227 (342)
                      ..|.|.|||..      +.+++.++..-...|++|+|+||++.||.+|.  +.. +|+-.+.+......|+... .-+.|
T Consensus       407 ~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna-lrLVHvPS~TVFsNfP~~n~~vg~v  485 (514)
T KOG2055|consen  407 DSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA-LRLVHVPSCTVFSNFPTSNTKVGHV  485 (514)
T ss_pred             CcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc-eEEEeccceeeeccCCCCCCcccce
Confidence            68999999964      34567777667788999999999999999885  344 5899999888777775432 22459


Q ss_pred             EEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          228 FSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       228 ~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +||+|||.+.   +||.|..+|.|++|.+.
T Consensus       486 tc~aFSP~sG---~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  486 TCMAFSPNSG---YLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EEEEecCCCc---eEEeecCCCceeeEeec
Confidence            9999999998   99999999999999875

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.88  E-value=5.9e-21  Score=165.96  Aligned_cols=227  Identities=11%  Similarity=0.203  Sum_probs=153.4

Q ss_pred             CCCeEEEEECCCCcEEE----------EEe-cCCceEEEEEcCC---eEEEEE-CCeEEEEECCCCc-------eeeEEe
Q 019349           73 SPRRLCLFNTTTGTALR----------ELN-FLTSILAVRLNKK---RLVIVL-REKTYIYDANTLA-------ILDTID  130 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~----------~~~-~~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~-------~~~~~~  130 (342)
                      ..+.+.|||..+.....          .+. +...-.+++|++.   .++.++ |++|.+||+....       ....+.
T Consensus       145 ~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~  224 (422)
T KOG0264|consen  145 SSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFS  224 (422)
T ss_pred             CCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEee
Confidence            47899999986532211          222 2234667888764   233333 7799999996432       123344


Q ss_pred             CCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc--CCceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEE
Q 019349          131 TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM--ELHSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVF  207 (342)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~--~~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlw  207 (342)
                      .|.....-+++.+.. ...+++++  .|+.+.|||++  +.++....++|.++|+|++|+| ++..|||||.|+++ +||
T Consensus       225 ~h~~~VeDV~~h~~h-~~lF~sv~--dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV-~Lw  300 (422)
T KOG0264|consen  225 GHEDVVEDVAWHPLH-EDLFGSVG--DDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTV-ALW  300 (422)
T ss_pred             cCCcceehhhccccc-hhhheeec--CCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcE-EEe
Confidence            444444444555433 34566666  68999999999  5667778899999999999999 67889999999985 899


Q ss_pred             EcCCCe-eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCC----Cccc--c-cccccccc
Q 019349          208 LVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGG----RTSS--I-LGSILPES  279 (342)
Q Consensus       208 d~~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~----~~~~--~-~~~~~~~~  279 (342)
                      |+++.. +++.+..  +...|.+|.|||...  ..||+++.|+.+.|||+..-.+..+.+    .+-.  | .+++....
T Consensus       301 DlRnL~~~lh~~e~--H~dev~~V~WSPh~e--tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV  376 (422)
T KOG0264|consen  301 DLRNLNKPLHTFEG--HEDEVFQVEWSPHNE--TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKV  376 (422)
T ss_pred             echhcccCceeccC--CCcceEEEEeCCCCC--ceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCccccc
Confidence            999864 5666643  456799999999876  499999999999999997654332210    0001  0 12222222


Q ss_pred             ccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          280 VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      ..-.|+|...             -.|+++..|+.++||++.
T Consensus       377 ~DfsWnp~eP-------------W~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  377 SDFSWNPNEP-------------WTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ccccCCCCCC-------------eEEEEecCCceEEEeecc
Confidence            2234555442             368899999999999986

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.88  E-value=1.5e-21  Score=165.30  Aligned_cols=237  Identities=14%  Similarity=0.196  Sum_probs=176.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      ..+.+.|..|+++. +..+.+|.++.++.|-++.. ....... ..+.-++.....+.++++|         ..|.|||.
T Consensus       106 ~AH~G~V~Gi~v~~-~~~~tvgdDKtvK~wk~~~~-p~~tilg~s~~~gIdh~~~~~~FaTcG---------e~i~IWD~  174 (433)
T KOG0268|consen  106 KAHEGLVRGICVTQ-TSFFTVGDDKTVKQWKIDGP-PLHTILGKSVYLGIDHHRKNSVFATCG---------EQIDIWDE  174 (433)
T ss_pred             ecccCceeeEEecc-cceEEecCCcceeeeeccCC-cceeeeccccccccccccccccccccC---------ceeeeccc
Confidence            35778999999998 77788888889999987653 2222222 2222344444455565554         38999999


Q ss_pred             CCCcEEEEEecCC-ceEEEEEcCCe---EEEE-ECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           83 TTGTALRELNFLT-SILAVRLNKKR---LVIV-LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        83 ~~~~~~~~~~~~~-~v~~i~~~~~~---~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      ....++.++.... .|.++.++|..   +..+ +|+.|.+||++..++++.+......   ..++++|+. +.++++. .
T Consensus       175 ~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRT---N~IswnPea-fnF~~a~-E  249 (433)
T KOG0268|consen  175 QRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRT---NTICWNPEA-FNFVAAN-E  249 (433)
T ss_pred             ccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccc---cceecCccc-cceeecc-c
Confidence            9999999888654 79999999864   2233 3899999999999888777543332   245677744 4444444 7


Q ss_pred             ccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349          158 KGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  236 (342)
Q Consensus       158 ~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (342)
                      |..+..||++..+ ++....+|.++|..++|||.|+-+++||-|.+ ||||.++.+.--..+.. ..-..|.|+.||-|.
T Consensus       250 D~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDks-IRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Ds  327 (433)
T KOG0268|consen  250 DHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKS-IRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDS  327 (433)
T ss_pred             cccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccce-EEEeecCCCcchhhhhH-hhhheeeEEEEeccc
Confidence            9999999998765 67778899999999999999999999999987 69999987753221111 112359999999999


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCCC
Q 019349          237 QFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       237 ~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +   |+++||+|+.|++|.....+.
T Consensus       328 k---yi~SGSdd~nvRlWka~Asek  349 (433)
T KOG0268|consen  328 K---YIISGSDDGNVRLWKAKASEK  349 (433)
T ss_pred             c---EEEecCCCcceeeeecchhhh
Confidence            9   999999999999998766543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.88  E-value=2.7e-19  Score=149.34  Aligned_cols=241  Identities=10%  Similarity=0.089  Sum_probs=171.3

Q ss_pred             eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC-ceEEEEE-cCCeEEEE-E---CCeEEEEE
Q 019349           46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRL-NKKRLVIV-L---REKTYIYD  119 (342)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~i~~-~~~~~~~~-~---d~~i~i~d  119 (342)
                      .+.+..+++..++..++.++       .|.+++|||..+++++.++.... .+..++| +.+..++. +   |.+|+..+
T Consensus        14 ~~~i~sl~fs~~G~~litss-------~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs   86 (311)
T KOG1446|consen   14 NGKINSLDFSDDGLLLITSS-------EDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS   86 (311)
T ss_pred             CCceeEEEecCCCCEEEEec-------CCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence            45677778777777877765       38899999999999999987654 4544555 33333333 3   77999999


Q ss_pred             CCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC
Q 019349          120 ANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE  199 (342)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~  199 (342)
                      +.+.+.++-+..|.....-.+++|  -+..+.+++  .|++|++||++..++...+..-..  ..++|+|+|-.+|++..
T Consensus        87 l~dNkylRYF~GH~~~V~sL~~sP--~~d~FlS~S--~D~tvrLWDlR~~~cqg~l~~~~~--pi~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   87 LHDNKYLRYFPGHKKRVNSLSVSP--KDDTFLSSS--LDKTVRLWDLRVKKCQGLLNLSGR--PIAAFDPEGLIFALANG  160 (311)
T ss_pred             eecCceEEEcCCCCceEEEEEecC--CCCeEEecc--cCCeEEeeEecCCCCceEEecCCC--cceeECCCCcEEEEecC
Confidence            999999999988777544445554  444666666  689999999998888766654334  44899999999999987


Q ss_pred             CCcEEEEEEcCCC--eeEEEeccC-cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccc
Q 019349          200 QGTIIRVFLVSEA--TKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSIL  276 (342)
Q Consensus       200 dg~~irlwd~~~~--~~~~~~~~~-~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  276 (342)
                      .. .|+++|++.-  .+...|... ....+...|.|||||+   +|+.++..+.+++.|.-++....+.....  ...-+
T Consensus       161 ~~-~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK---~iLlsT~~s~~~~lDAf~G~~~~tfs~~~--~~~~~  234 (311)
T KOG1446|consen  161 SE-LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGK---SILLSTNASFIYLLDAFDGTVKSTFSGYP--NAGNL  234 (311)
T ss_pred             CC-eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCC---EEEEEeCCCcEEEEEccCCcEeeeEeecc--CCCCc
Confidence            76 5799999864  233444322 2345699999999999   99999999999999976665322100000  00001


Q ss_pred             cccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          277 PESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      |  ..+.              |.|+++.|++++.||++++|++..
T Consensus       235 ~--~~a~--------------ftPds~Fvl~gs~dg~i~vw~~~t  263 (311)
T KOG1446|consen  235 P--LSAT--------------FTPDSKFVLSGSDDGTIHVWNLET  263 (311)
T ss_pred             c--eeEE--------------ECCCCcEEEEecCCCcEEEEEcCC
Confidence            1  1223              345558999999999999999843

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.88  E-value=2.4e-20  Score=161.33  Aligned_cols=235  Identities=12%  Similarity=0.153  Sum_probs=177.4

Q ss_pred             CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC-ceEEEEEcCCeEEEEE---CCeEEEEECCC
Q 019349           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVIVL---REKTYIYDANT  122 (342)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~---d~~i~i~d~~~  122 (342)
                      .++..+...+..+..+ .||      .|.++.++|...++.+..++.+. .|+++.++++...+..   |..|+||....
T Consensus       220 pgi~ald~~~s~~~il-TGG------~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~  292 (506)
T KOG0289|consen  220 PGITALDIIPSSSKIL-TGG------EDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPL  292 (506)
T ss_pred             CCeeEEeecCCCCcce-ecC------CCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccc
Confidence            4556666666644443 444      48899999999988888887554 8999999998766554   77999999877


Q ss_pred             CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec--ccCCeeEEEECCCCCEEEEEeCC
Q 019349          123 LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA--HQAPLAAIVLSSNGMYIATASEQ  200 (342)
Q Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~--h~~~v~~i~~s~dg~~lat~s~d  200 (342)
                      .........|..  .+..++.+|.+.|+..++  .||+.-..|++++..+.....  ..-.+++.+|+|||..+++|..|
T Consensus       293 ~s~~~~~~~h~~--~V~~ls~h~tgeYllsAs--~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d  368 (506)
T KOG0289|consen  293 SSEPTSSRPHEE--PVTGLSLHPTGEYLLSAS--NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPD  368 (506)
T ss_pred             ccCccccccccc--cceeeeeccCCcEEEEec--CCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCC
Confidence            655555554444  466677777888999888  689999999999987755543  22358999999999999999999


Q ss_pred             CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccc
Q 019349          201 GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESV  280 (342)
Q Consensus       201 g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  280 (342)
                      |. +++||+.++..+..|..  |.++|..++|+.+|.   |||++++|+.|++||++..+..++..-...          
T Consensus       369 ~~-vkiwdlks~~~~a~Fpg--ht~~vk~i~FsENGY---~Lat~add~~V~lwDLRKl~n~kt~~l~~~----------  432 (506)
T KOG0289|consen  369 GV-VKIWDLKSQTNVAKFPG--HTGPVKAISFSENGY---WLATAADDGSVKLWDLRKLKNFKTIQLDEK----------  432 (506)
T ss_pred             ce-EEEEEcCCccccccCCC--CCCceeEEEeccCce---EEEEEecCCeEEEEEehhhcccceeecccc----------
Confidence            96 69999999999888864  577899999999999   999999999999999998776443111111          


Q ss_pred             cccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349          281 NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                                ..+..+.|.+-+.+|+.++.|=+||+|.
T Consensus       433 ----------~~v~s~~fD~SGt~L~~~g~~l~Vy~~~  460 (506)
T KOG0289|consen  433 ----------KEVNSLSFDQSGTYLGIAGSDLQVYICK  460 (506)
T ss_pred             ----------ccceeEEEcCCCCeEEeecceeEEEEEe
Confidence                      0112233344557898888887777765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=6.8e-20  Score=171.44  Aligned_cols=240  Identities=10%  Similarity=0.134  Sum_probs=183.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc-EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR-LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      .|...-+.|+|.|+|..|++++.++ +++|+..+.. .-......+..+..+...++.++..+.       +++|.++..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~-------~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSE-------QNTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeec-------cceEEEeeC
Confidence            3556788999999999998887777 6999876552 211122134445556666677766654       899999999


Q ss_pred             CCCcEEEEE-ecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349           83 TTGTALREL-NFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (342)
Q Consensus        83 ~~~~~~~~~-~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  158 (342)
                      ..++.-.-+ .+.-+++.++++.++  ++.++ |-.|++-++.+......+..+..  .+.+++++|++.+||+..  .|
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a--pVl~l~~~p~~~fLAvss--~d  159 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA--PVLQLSYDPKGNFLAVSS--CD  159 (933)
T ss_pred             CCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC--ceeeeeEcCCCCEEEEEe--cC
Confidence            877654322 344567777777664  44444 44899999998877777776655  477888899999999988  58


Q ss_pred             cEEEEEEccCCceeEEEec--------ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEE
Q 019349          159 GSVLVYNVMELHSHCEIDA--------HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL  230 (342)
Q Consensus       159 g~i~iwd~~~~~~~~~~~~--------h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l  230 (342)
                      |.|++||+.++....++.+        ....+..++|+|+|..||..+.|+. |++++..+.+....++.......+..+
T Consensus       160 G~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~-Vkvy~r~~we~~f~Lr~~~~ss~~~~~  238 (933)
T KOG1274|consen  160 GKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNT-VKVYSRKGWELQFKLRDKLSSSKFSDL  238 (933)
T ss_pred             ceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCe-EEEEccCCceeheeecccccccceEEE
Confidence            9999999999877665542        1356778999999888888888887 589999999999998776656669999


Q ss_pred             EEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          231 SFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      .|+|+|+   |||+++.||.|-|||+++.
T Consensus       239 ~wsPnG~---YiAAs~~~g~I~vWnv~t~  264 (933)
T KOG1274|consen  239 QWSPNGK---YIAASTLDGQILVWNVDTH  264 (933)
T ss_pred             EEcCCCc---EEeeeccCCcEEEEecccc
Confidence            9999999   9999999999999999973

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.87  E-value=4.6e-20  Score=152.48  Aligned_cols=200  Identities=14%  Similarity=0.158  Sum_probs=150.7

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEeCCCCc------EEE-------EE----eeCCEEEEEEcCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGR------LCY-------ER----AVGAFSIVEMLYSSSLLAIV   64 (342)
Q Consensus         4 ~~~~~~V~~l~fs~-d~~~la~g~~~g-~~v~d~~~~~------~~~-------~~----~~~~~~~~~~~~~~~~~~~~   64 (342)
                      .+|.+.|+++...+ .|+++++|..|| +.|||++...      ++.       ..    |.-.+..+.|.+-...+.+.
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            46888999999987 778899999888 5999987542      110       00    11123334444444555555


Q ss_pred             cCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC----eEEEEE--CCeEEEEECCCCceeeEEeCCCCCceE
Q 019349           65 GAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK----RLVIVL--REKTYIYDANTLAILDTIDTVPNLKGL  138 (342)
Q Consensus        65 ~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~----~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~  138 (342)
                      +.      .|.++++||..+-+..-.+++++.|.+-+++|-    -++.+.  +-+|++-|+.++..-+.+..|.  .++
T Consensus       120 sS------FDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr--~~v  191 (397)
T KOG4283|consen  120 SS------FDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHR--DGV  191 (397)
T ss_pred             cc------ccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecccc--Cce
Confidence            53      799999999999999999999999988877663    233333  5599999999999988887654  478


Q ss_pred             EEEeeCCCccEEEEeCCCCccEEEEEEccCC-ceeE--------------EEecccCCeeEEEECCCCCEEEEEeCCCcE
Q 019349          139 CAFSPSLNACFLAVPASTTKGSVLVYNVMEL-HSHC--------------EIDAHQAPLAAIVLSSNGMYIATASEQGTI  203 (342)
Q Consensus       139 ~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-~~~~--------------~~~~h~~~v~~i~~s~dg~~lat~s~dg~~  203 (342)
                      .++.++|...++.+.|+ .||.|++||++.. .+..              +-.+|.+.|+.++|+.||.++++++.|.+ 
T Consensus       192 laV~Wsp~~e~vLatgs-aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r-  269 (397)
T KOG4283|consen  192 LAVEWSPSSEWVLATGS-ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDR-  269 (397)
T ss_pred             EEEEeccCceeEEEecC-CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccc-
Confidence            88888887777666665 7999999999754 2222              23468889999999999999999999988 


Q ss_pred             EEEEEcCCCe
Q 019349          204 IRVFLVSEAT  213 (342)
Q Consensus       204 irlwd~~~~~  213 (342)
                      +|+|+..+|+
T Consensus       270 ~r~wn~~~G~  279 (397)
T KOG4283|consen  270 IRVWNMESGR  279 (397)
T ss_pred             eEEeecccCc
Confidence            5999998886

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.87  E-value=2.7e-20  Score=161.88  Aligned_cols=241  Identities=12%  Similarity=0.148  Sum_probs=164.6

Q ss_pred             CCCCCeEEEEEcCCCCEE-EEEcCCc-EEEEeCCCCc------------EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCC
Q 019349            5 SSSYPVFFVSFNQDNSGF-ALSTKDG-FKIFDSSTGR------------LCYERAVGAFSIVEMLYSSSLLAIVGAGEQP   70 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~l-a~g~~~g-~~v~d~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   70 (342)
                      .+++.|+.++.-|....+ |+++..+ +.|||.....            +....|.+.-..+.|.......++.++    
T Consensus       122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~----  197 (422)
T KOG0264|consen  122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGS----  197 (422)
T ss_pred             cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeecc----
Confidence            467889999999988665 5556555 7999965431            122233332222444444444444444    


Q ss_pred             CCCCCeEEEEECCCCcE-------EEEEe-cCCceEEEEEcCC---eEEEEE-CCeEEEEECCC--CceeeEEeCCCCCc
Q 019349           71 SLSPRRLCLFNTTTGTA-------LRELN-FLTSILAVRLNKK---RLVIVL-REKTYIYDANT--LAILDTIDTVPNLK  136 (342)
Q Consensus        71 ~~~d~~i~iwd~~~~~~-------~~~~~-~~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~--~~~~~~~~~~~~~~  136 (342)
                        .|.+|++||+.....       ...+. +...|.+++|++.   .+..++ |+.+.|||+++  .+..+....|..+ 
T Consensus       198 --~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~-  274 (422)
T KOG0264|consen  198 --DDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE-  274 (422)
T ss_pred             --CCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc-
Confidence              699999999864322       12222 3457888998653   344444 77999999995  4444555555554 


Q ss_pred             eEEEEeeCCC-ccEEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCe
Q 019349          137 GLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEAT  213 (342)
Q Consensus       137 ~~~~~~~~~~-~~~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~  213 (342)
                       +.+++++|- +..||+++  .|++|.+||+++.. ++.++.+|...|.+|.|||. ...||+++.|+++ .+||+..-.
T Consensus       275 -vn~~~fnp~~~~ilAT~S--~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl-~vWDls~ig  350 (422)
T KOG0264|consen  275 -VNCVAFNPFNEFILATGS--ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRL-NVWDLSRIG  350 (422)
T ss_pred             -eeEEEeCCCCCceEEecc--CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcE-EEEeccccc
Confidence             555555553 44566665  69999999999864 67899999999999999995 4789999999996 699996432


Q ss_pred             eEE------------EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          214 KSY------------SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       214 ~~~------------~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      ...            -|.-+.|.+.|..+.|+|+..-  .+++.++|+.++||+...
T Consensus       351 ~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW--~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  351 EEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPW--TIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccChhhhccCCcceeEEecCcccccccccCCCCCCe--EEEEecCCceEEEeeccc
Confidence            211            1333445677999999999973  677889999999999763

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.87  E-value=8.4e-20  Score=149.00  Aligned_cols=241  Identities=12%  Similarity=0.101  Sum_probs=179.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      .|.+.|.|+..+.+.++|++|+.|. +++||+++|+.+..... ..+..+.+.+.+++.+.+....-+  ....|.++|+
T Consensus        50 GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg--~~~~v~~fdi  127 (327)
T KOG0643|consen   50 GHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMG--YTCFVSVFDI  127 (327)
T ss_pred             CCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcC--cceEEEEEEc
Confidence            6788999999999999999998876 69999999999988765 567778898888888777642211  2567999998


Q ss_pred             C-------CCcEEEEEecC-CceEEEEEcCCeE-EEEE--CCeEEEEECCCCcee-eEEeCCCCCceEEEEeeCCCccEE
Q 019349           83 T-------TGTALRELNFL-TSILAVRLNKKRL-VIVL--REKTYIYDANTLAIL-DTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        83 ~-------~~~~~~~~~~~-~~v~~i~~~~~~~-~~~~--d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                      +       ..++...+..+ +.++.+-|.+-.- +++.  ++.|.+||.++++.+ ...+.|.  ..+..+.++++..++
T Consensus       128 ~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~--~~Ind~q~s~d~T~F  205 (327)
T KOG0643|consen  128 RDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHS--SKINDLQFSRDRTYF  205 (327)
T ss_pred             cCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhc--cccccccccCCcceE
Confidence            7       34456666544 4788888877543 3333  789999999998544 4434333  367888889999999


Q ss_pred             EEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe-CCCcEEEEEEcCCCee------------EEE
Q 019349          151 AVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATK------------SYS  217 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s-~dg~~irlwd~~~~~~------------~~~  217 (342)
                      ++++  .|.+-++||+.+.+.+.++.. ..||++.+++|.-.+++-|+ .+..-+.-=+.+.|+.            +..
T Consensus       206 iT~s--~Dttakl~D~~tl~v~Kty~t-e~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigr  282 (327)
T KOG0643|consen  206 ITGS--KDTTAKLVDVRTLEVLKTYTT-ERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGR  282 (327)
T ss_pred             Eecc--cCccceeeeccceeeEEEeee-cccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcc
Confidence            9887  689999999999999888864 67999999999766666554 4432222222233332            222


Q ss_pred             eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      .+  .|-++|++++|+|+|+   ..++|++||.|++.-.+
T Consensus       283 vk--GHFGPINsvAfhPdGk---sYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  283 VK--GHFGPINSVAFHPDGK---SYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             cc--ccccCcceeEECCCCc---ccccCCCCceEEEEEec
Confidence            22  2356799999999999   89999999999988654

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=3.2e-20  Score=161.90  Aligned_cols=270  Identities=11%  Similarity=0.152  Sum_probs=192.7

Q ss_pred             EEEEeCCCCcEEEEEeeCCEE---EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEE-EEecCCceEEEEEcCC
Q 019349           30 FKIFDSSTGRLCYERAVGAFS---IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR-ELNFLTSILAVRLNKK  105 (342)
Q Consensus        30 ~~v~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~i~~~~~  105 (342)
                      +.+||+.+|..+.....+...   ...+ -...+++...-      ....|.+|.+.+..... .+-.+++|.++.-++.
T Consensus        20 ~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~------~rp~l~vw~i~k~~~~~q~~v~Pg~v~al~s~n~   92 (476)
T KOG0646|consen   20 CIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQL------KRPLLHVWEILKKDQVVQYIVLPGPVHALASSNL   92 (476)
T ss_pred             eeEEecCCCceeEEecCcccccchhhhh-hchhheeeecc------cCccccccccCchhhhhhhcccccceeeeecCCC
Confidence            699999999766554433111   1111 12244444332      35689999987655544 5557889999999988


Q ss_pred             eEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc---------CCceeE
Q 019349          106 RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM---------ELHSHC  173 (342)
Q Consensus       106 ~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~---------~~~~~~  173 (342)
                      +.+++.   .+.+++|.+.+|.++..+..  +...+.++-++.|+.+++++|  .||.|.+|++.         +.++.+
T Consensus        93 G~~l~ag~i~g~lYlWelssG~LL~v~~a--HYQ~ITcL~fs~dgs~iiTgs--kDg~V~vW~l~~lv~a~~~~~~~p~~  168 (476)
T KOG0646|consen   93 GYFLLAGTISGNLYLWELSSGILLNVLSA--HYQSITCLKFSDDGSHIITGS--KDGAVLVWLLTDLVSADNDHSVKPLH  168 (476)
T ss_pred             ceEEEeecccCcEEEEEeccccHHHHHHh--hccceeEEEEeCCCcEEEecC--CCccEEEEEEEeecccccCCCcccee
Confidence            766654   68999999999999988854  455788889999999999998  79999999872         446788


Q ss_pred             EEecccCCeeEEEECCCC--CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcE
Q 019349          174 EIDAHQAPLAAIVLSSNG--MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL  251 (342)
Q Consensus       174 ~~~~h~~~v~~i~~s~dg--~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i  251 (342)
                      .+..|+-+|+.+...+.|  .+|+|+|.|.+ +|+||+..|.++.++.   .+..+.+++..|-++   .+.+|+++|.|
T Consensus       169 ~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t-~k~wdlS~g~LLlti~---fp~si~av~lDpae~---~~yiGt~~G~I  241 (476)
T KOG0646|consen  169 IFSDHTLSITDLQIGSGGTNARLYTASEDRT-IKLWDLSLGVLLLTIT---FPSSIKAVALDPAER---VVYIGTEEGKI  241 (476)
T ss_pred             eeccCcceeEEEEecCCCccceEEEecCCce-EEEEEeccceeeEEEe---cCCcceeEEEccccc---EEEecCCcceE
Confidence            899999999999887753  68999999987 6999999999988773   456799999999999   99999999999


Q ss_pred             EEEecCCCCCCCC--CCCccccccccccccccccccccccce--eeeccCCCccccEEEEEEeCCcEEEEEEecCCC
Q 019349          252 HVFSPGFAINQRR--GGRTSSILGSILPESVNEVLDPADHHV--LRNAFPAGVKRASVSVITYNGYFVEYIFSINNC  324 (342)
Q Consensus       252 ~vwd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~  324 (342)
                      .+.++........  ..+... .   ....+   -...+|.-  .++.++...++..|++|+.||.|.+|+.....+
T Consensus       242 ~~~~~~~~~~~~~~v~~k~~~-~---~~t~~---~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~  311 (476)
T KOG0646|consen  242 FQNLLFKLSGQSAGVNQKGRH-E---ENTQI---NVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC  311 (476)
T ss_pred             EeeehhcCCcccccccccccc-c---cccee---eeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH
Confidence            9999876542110  000000 0   00000   00011111  223334455678999999999999999876543

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.86  E-value=8.9e-22  Score=164.55  Aligned_cols=161  Identities=16%  Similarity=0.169  Sum_probs=138.6

Q ss_pred             CceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCC------CCCceEEEEeeCCCccEEEEeCCCCccEEEEEE
Q 019349           95 TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTV------PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN  165 (342)
Q Consensus        95 ~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd  165 (342)
                      +.+.+..|+|+..++++   ||-|.+||+-++++-+.++-.      .....+.|++++.|...+|+++  .||.|++|.
T Consensus       214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs--qDGkIKvWr  291 (508)
T KOG0275|consen  214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS--QDGKIKVWR  291 (508)
T ss_pred             cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccC--cCCcEEEEE
Confidence            46788899999877766   899999999998776555321      1234678889998888999877  799999999


Q ss_pred             ccCCceeEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEE
Q 019349          166 VMELHSHCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA  244 (342)
Q Consensus       166 ~~~~~~~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~  244 (342)
                      +++|.+++.|. +|...|+|+.||.|+..++++|.|.+ +|+.-+++|+++++|+.+  ..-|+...|++||.   .+++
T Consensus       292 i~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~t-vRiHGlKSGK~LKEfrGH--sSyvn~a~ft~dG~---~iis  365 (508)
T KOG0275|consen  292 IETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQT-VRIHGLKSGKCLKEFRGH--SSYVNEATFTDDGH---HIIS  365 (508)
T ss_pred             EecchHHHHhhhhhccCeeEEEEccCcchhhcccccce-EEEeccccchhHHHhcCc--cccccceEEcCCCC---eEEE
Confidence            99999999987 89999999999999999999999986 699999999999999754  55699999999999   9999


Q ss_pred             EeCCCcEEEEecCCCCCCC
Q 019349          245 TSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       245 ~s~dg~i~vwd~~~~~~~~  263 (342)
                      +|.||+|+||+.++.+...
T Consensus       366 aSsDgtvkvW~~KtteC~~  384 (508)
T KOG0275|consen  366 ASSDGTVKVWHGKTTECLS  384 (508)
T ss_pred             ecCCccEEEecCcchhhhh
Confidence            9999999999998876543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=4.7e-20  Score=165.26  Aligned_cols=290  Identities=14%  Similarity=0.115  Sum_probs=198.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCe--EEEEcCCC-----------
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSL--LAIVGAGE-----------   68 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~g~-----------   68 (342)
                      ..|.+.|+||+..|.|.+||+|+++| +|||.+.+|+.++.... +.|..+.|.+.++.  ++++-+..           
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivnp~~G~~  476 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECVLIVNPIFGDR  476 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCceEEeCccccch
Confidence            35788999999999999999999998 59999999998876554 56667777766542  22211110           


Q ss_pred             --------------CCCCCCCeEEEEECCCCc-----EEEEEecCCceEEEEEcCCeEEEEE------CCeEEEEECCCC
Q 019349           69 --------------QPSLSPRRLCLFNTTTGT-----ALRELNFLTSILAVRLNKKRLVIVL------REKTYIYDANTL  123 (342)
Q Consensus        69 --------------~~~~~d~~i~iwd~~~~~-----~~~~~~~~~~v~~i~~~~~~~~~~~------d~~i~i~d~~~~  123 (342)
                                    +....+..+..|.-...+     .-..+.+..+|+.+.|++++-++++      ...|.|+++...
T Consensus       477 ~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~  556 (733)
T KOG0650|consen  477 LEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR  556 (733)
T ss_pred             hhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccc
Confidence                          112345677888754211     1235677889999999987655554      248999999876


Q ss_pred             ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcE
Q 019349          124 AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTI  203 (342)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~  203 (342)
                      +.+.-+....  ..+.++.++|...+++++.   ...|+|||+.....+..+......|..++++|.|..|+.|+.|+++
T Consensus       557 ~sQ~PF~ksk--G~vq~v~FHPs~p~lfVaT---q~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~  631 (733)
T KOG0650|consen  557 KSQSPFRKSK--GLVQRVKFHPSKPYLFVAT---QRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKM  631 (733)
T ss_pred             cccCchhhcC--CceeEEEecCCCceEEEEe---ccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCee
Confidence            5554443222  2355666677666777664   5789999999887777777667789999999999999999999986


Q ss_pred             EEEEEcCCCeeEE-EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC--CCCCCccccccccc----
Q 019349          204 IRVFLVSEATKSY-SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ--RRGGRTSSILGSIL----  276 (342)
Q Consensus       204 irlwd~~~~~~~~-~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~--~~~~~~~~~~~~~~----  276 (342)
                      + .||+.-..+.+ +++  .|...+++++|++.-.   ++|+|+.||++.||--.--...  +..-.+-+.+.++.    
T Consensus       632 ~-WfDldlsskPyk~lr--~H~~avr~Va~H~ryP---Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~  705 (733)
T KOG0650|consen  632 C-WFDLDLSSKPYKTLR--LHEKAVRSVAFHKRYP---LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTND  705 (733)
T ss_pred             E-EEEcccCcchhHHhh--hhhhhhhhhhhccccc---eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecc
Confidence            4 88997664433 333  2355699999999988   9999999999999953211110  00000000011110    


Q ss_pred             cccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349          277 PESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                      -....+.|+|..              ..|++++.||++++|.
T Consensus       706 ~gVLd~~wHP~q--------------pWLfsAGAd~tirlfT  733 (733)
T KOG0650|consen  706 LGVLDTIWHPRQ--------------PWLFSAGADGTIRLFT  733 (733)
T ss_pred             cceEeecccCCC--------------ceEEecCCCceEEeeC
Confidence            011234566654              7899999999999983

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.86  E-value=2.4e-19  Score=149.98  Aligned_cols=239  Identities=14%  Similarity=0.118  Sum_probs=166.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-cEEEEeCCCC--------cE------EEEEe-eCCEEEEEEc-------CCCCeEEEEc
Q 019349            9 PVFFVSFNQDNSGFALSTKD-GFKIFDSSTG--------RL------CYERA-VGAFSIVEML-------YSSSLLAIVG   65 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~--------~~------~~~~~-~~~~~~~~~~-------~~~~~~~~~~   65 (342)
                      -...+.|+|||++|++-+++ ++++|++...        .+      .+... ...+....+-       ++.++++..+
T Consensus        51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ss  130 (406)
T KOG2919|consen   51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSS  130 (406)
T ss_pred             hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeecc
Confidence            35578999999998887765 5699986321        11      11111 1233333332       3445555554


Q ss_pred             CCCCCCCCCCeEEEEECCCCcEEEEEec---C---CceEEEEEcCCeEEE-EE-CCeEEEEEC-CCCceeeEEeCCCC--
Q 019349           66 AGEQPSLSPRRLCLFNTTTGTALRELNF---L---TSILAVRLNKKRLVI-VL-REKTYIYDA-NTLAILDTIDTVPN--  134 (342)
Q Consensus        66 ~g~~~~~~d~~i~iwd~~~~~~~~~~~~---~---~~v~~i~~~~~~~~~-~~-d~~i~i~d~-~~~~~~~~~~~~~~--  134 (342)
                             .++-|++||.-+|+...++..   .   ....+++|++++-.+ +. .+.|++||+ +.++......+..+  
T Consensus       131 -------r~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k  203 (406)
T KOG2919|consen  131 -------RDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGK  203 (406)
T ss_pred             -------ccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhccc
Confidence                   488999999999998877643   2   245789999986544 44 569999999 55543333322221  


Q ss_pred             ---CceEEEEeeCCCcc-EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 019349          135 ---LKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS  210 (342)
Q Consensus       135 ---~~~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~  210 (342)
                         ...+.+++++|... .+|.++  ....+-||.-..+.++..+-+|.+.|+.++|.+||+.|.+|+.....|-.||++
T Consensus       204 ~gq~giisc~a~sP~~~~~~a~gs--Y~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR  281 (406)
T KOG2919|consen  204 FGQKGIISCFAFSPMDSKTLAVGS--YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIR  281 (406)
T ss_pred             ccccceeeeeeccCCCCcceeeec--ccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeeh
Confidence               23455777777554 677776  467788888888889999999999999999999999999998755556799998


Q ss_pred             C-CeeEEEeccCcCce--eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          211 E-ATKSYSFRRGTYPS--TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       211 ~-~~~~~~~~~~~~~~--~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      . +..++++.++....  .|. ....|+++   +|++|+.||.|++||+++.-
T Consensus       282 ~~~~pv~~L~rhv~~TNQRI~-FDld~~~~---~LasG~tdG~V~vwdlk~~g  330 (406)
T KOG2919|consen  282 YSRDPVYALERHVGDTNQRIL-FDLDPKGE---ILASGDTDGSVRVWDLKDLG  330 (406)
T ss_pred             hccchhhhhhhhccCccceEE-EecCCCCc---eeeccCCCccEEEEecCCCC
Confidence            5 45677776654311  232 34468888   99999999999999998743

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=1.2e-18  Score=158.44  Aligned_cols=239  Identities=12%  Similarity=0.119  Sum_probs=184.5

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcE---E-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL---C-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      .+.+|.++||+.+.+.||+|-.+| +.+||+.+.-.   . +-...+.+..++|. .+..+..++.       ++.|.-|
T Consensus        24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~-------sg~i~Ew   95 (691)
T KOG2048|consen   24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGL-------SGSITEW   95 (691)
T ss_pred             eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecC-------CceEEEE
Confidence            357899999999999999997777 69999988732   1 22233567777776 4455555554       7999999


Q ss_pred             ECCCCcEEEEEecC-CceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           81 NTTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        81 d~~~~~~~~~~~~~-~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      |+.+++++..++.. +.|.+++.++..  +.+.. ||.++.++...++.............+.+++++|++..++.++  
T Consensus        96 Dl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs--  173 (691)
T KOG2048|consen   96 DLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS--  173 (691)
T ss_pred             ecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc--
Confidence            99999999888764 489999998754  44443 7788888888877665544434446788999999998888776  


Q ss_pred             CccEEEEEEccCCceeEEEe-----c---ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEE
Q 019349          157 TKGSVLVYNVMELHSHCEID-----A---HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  228 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~-----~---h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~  228 (342)
                      .||.|++||..++..++...     .   -.--|+++.|-.++ .||+|...|+ +++||...|.++..+..  +.+.|.
T Consensus       174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~-V~FWd~~~gTLiqS~~~--h~adVl  249 (691)
T KOG2048|consen  174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGT-VTFWDSIFGTLIQSHSC--HDADVL  249 (691)
T ss_pred             cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCce-EEEEcccCcchhhhhhh--hhccee
Confidence            68999999999988765221     1   22347888887664 6999999998 58999999999888764  366799


Q ss_pred             EEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          229 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +|+-++++.   ++.+++.|+.|--|...+...
T Consensus       250 ~Lav~~~~d---~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  250 ALAVADNED---RVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             EEEEcCCCC---eEEEccCCCceEEEEecCCcc
Confidence            999999987   999999999998888776643

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.86  E-value=3.5e-19  Score=166.71  Aligned_cols=242  Identities=10%  Similarity=0.118  Sum_probs=182.7

Q ss_pred             EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC-cEEEEEe-cCCceEEEEEcCCeEEEEE-CCeEEEEEC
Q 019349           44 RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-TALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDA  120 (342)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~-~~~~~~~-~~~~v~~i~~~~~~~~~~~-d~~i~i~d~  120 (342)
                      .|..+...+++.++++++.+++.       |+.|++|+.... +...++. ....|.+++....+++.++ +++|.+|.+
T Consensus        11 aht~G~t~i~~d~~gefi~tcgs-------dg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGS-------DGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecC-------CCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeC
Confidence            35566777888888898777764       899999997655 4444454 5668999999888888888 789999999


Q ss_pred             CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349          121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ  200 (342)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d  200 (342)
                      .+++.-.-+....-+  +-.++.++++.++|.++  .|-.|++-++........+.+|+.+|.++.|+|++++||+.+-|
T Consensus        84 ps~~~~~iL~Rftlp--~r~~~v~g~g~~iaags--dD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~d  159 (933)
T KOG1274|consen   84 PSGEEDTILARFTLP--IRDLAVSGSGKMIAAGS--DDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCD  159 (933)
T ss_pred             CCCCccceeeeeecc--ceEEEEecCCcEEEeec--CceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecC
Confidence            887543222221223  33445566778998887  58899999999998999999999999999999999999999999


Q ss_pred             CcEEEEEEcCCCeeEEEeccCc-----C-ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccc
Q 019349          201 GTIIRVFLVSEATKSYSFRRGT-----Y-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS  274 (342)
Q Consensus       201 g~~irlwd~~~~~~~~~~~~~~-----~-~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  274 (342)
                      |++ ++||+.++.+...+..-.     . ...+..++|+|++.   .||+.+.|++|++|+.+.-.+....      ...
T Consensus       160 G~v-~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g---~la~~~~d~~Vkvy~r~~we~~f~L------r~~  229 (933)
T KOG1274|consen  160 GKV-QIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGG---TLAVPPVDNTVKVYSRKGWELQFKL------RDK  229 (933)
T ss_pred             ceE-EEEEcccchhhhhcccCCccccccccceeeeeeecCCCC---eEEeeccCCeEEEEccCCceeheee------ccc
Confidence            985 899999998766653211     1 22367899999987   8999999999999998776553321      111


Q ss_pred             cccc-cccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          275 ILPE-SVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       275 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      .... .....|+|.+              .||++++.||.|-+|+++
T Consensus       230 ~~ss~~~~~~wsPnG--------------~YiAAs~~~g~I~vWnv~  262 (933)
T KOG1274|consen  230 LSSSKFSDLQWSPNG--------------KYIAASTLDGQILVWNVD  262 (933)
T ss_pred             ccccceEEEEEcCCC--------------cEEeeeccCCcEEEEecc
Confidence            1111 1234577755              899999999999999987

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.86  E-value=4.7e-20  Score=162.19  Aligned_cols=274  Identities=14%  Similarity=0.159  Sum_probs=195.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCC-cE-----EEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTG-RL-----CYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~-~~-----~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      .|..-|..+..|...+++.+|+..+++|||+... ..     +-.+. ..-+..+.++.+++.+ ++||      .-.++
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtL-ivGG------eastl  489 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTL-IVGG------EASTL  489 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceE-Eecc------cccee
Confidence            3566788999999999999999999999998543 11     11111 1233444555555555 4454      26799


Q ss_pred             EEEECCCCcEEEEEecCC---ceEEEEEcCCeEEE---EECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           78 CLFNTTTGTALRELNFLT---SILAVRLNKKRLVI---VLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~~~~---~v~~i~~~~~~~~~---~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      -|||+.........+.+.   ...+++.++|--+.   ++||.|.|||+.+..+++.++.+.+  +..|+..++++..|=
T Consensus       490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtD--GascIdis~dGtklW  567 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDISKDGTKLW  567 (705)
T ss_pred             eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCC--CceeEEecCCCceee
Confidence            999998766544444433   56677788875433   3399999999999999999987655  677777788888998


Q ss_pred             EeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEE
Q 019349          152 VPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  231 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~  231 (342)
                      ++|  -|.+|+.||++++..+.... ..+.|.++-++|.+.+||.|-+.+.+ .|-..... ..+.+  +.+..-|.++.
T Consensus       568 TGG--lDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~v-evlh~skp-~kyql--hlheScVLSlK  640 (705)
T KOG0639|consen  568 TGG--LDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNV-EVLHTSKP-EKYQL--HLHESCVLSLK  640 (705)
T ss_pred             cCC--Cccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcE-EEEecCCc-cceee--cccccEEEEEE
Confidence            888  68999999999987654322 35789999999999999999998864 45555433 22333  44566799999


Q ss_pred             EecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeC
Q 019349          232 FGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN  311 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  311 (342)
                      |.+.|+   ++++.+.|+-+..|....+...-+.++.+.        ...|-.              ..++.+|++|++|
T Consensus       641 Fa~cGk---wfvStGkDnlLnawrtPyGasiFqskE~Ss--------VlsCDI--------------S~ddkyIVTGSGd  695 (705)
T KOG0639|consen  641 FAYCGK---WFVSTGKDNLLNAWRTPYGASIFQSKESSS--------VLSCDI--------------SFDDKYIVTGSGD  695 (705)
T ss_pred             ecccCc---eeeecCchhhhhhccCccccceeeccccCc--------ceeeee--------------ccCceEEEecCCC
Confidence            999999   999999999999998766543221111111        111222              2234799999999


Q ss_pred             CcEEEEEE
Q 019349          312 GYFVEYIF  319 (342)
Q Consensus       312 g~v~~~~~  319 (342)
                      ....+|.+
T Consensus       696 kkATVYeV  703 (705)
T KOG0639|consen  696 KKATVYEV  703 (705)
T ss_pred             cceEEEEE
Confidence            99998876

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.86  E-value=2.6e-18  Score=159.37  Aligned_cols=281  Identities=12%  Similarity=0.167  Sum_probs=193.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      +.....|+++.=+|-=..+|+|..+| +.++|+..++.+.+...  +.+..+++..+++.+..++.      ..+.+.+|
T Consensus       199 ~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~------~~G~m~~w  272 (910)
T KOG1539|consen  199 QEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR------SNGDMAFW  272 (910)
T ss_pred             cccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc------CCceEEEE
Confidence            45568899999999999999999998 69999999988876544  77888888888888877766      47899999


Q ss_pred             ECCCCcEEEEEe--cCCceEEEEEcCCeEEEEE---CCeEEEEECC--CC--ceeeE-----------------------
Q 019349           81 NTTTGTALRELN--FLTSILAVRLNKKRLVIVL---REKTYIYDAN--TL--AILDT-----------------------  128 (342)
Q Consensus        81 d~~~~~~~~~~~--~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~--~~--~~~~~-----------------------  128 (342)
                      |+...+.+....  +.+.|....+-+...++.+   |+..++|-+.  ++  +.++.                       
T Consensus       273 DLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ils  352 (910)
T KOG1539|consen  273 DLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILS  352 (910)
T ss_pred             EcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEe
Confidence            998877665443  2234444444333332222   4433333221  11  11111                       


Q ss_pred             --------------------------------------------------------------------------------
Q 019349          129 --------------------------------------------------------------------------------  128 (342)
Q Consensus       129 --------------------------------------------------------------------------------  128 (342)
                                                                                                      
T Consensus       353 a~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~  432 (910)
T KOG1539|consen  353 AKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNK  432 (910)
T ss_pred             cccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCc
Confidence                                                                                            


Q ss_pred             ------EeCC---CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE---ecccCCeeEEEECCCCCEEEE
Q 019349          129 ------IDTV---PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI---DAHQAPLAAIVLSSNGMYIAT  196 (342)
Q Consensus       129 ------~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~---~~h~~~v~~i~~s~dg~~lat  196 (342)
                            ++..   .....+.+++.++.|++.+.+.  ..|.|-+|++++|-...++   ++|..+|+.++...-++.+++
T Consensus       433 ~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~--S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vs  510 (910)
T KOG1539|consen  433 TSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGY--SKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVS  510 (910)
T ss_pred             ccccEEecCccccccCcceEEEEEeccCceEEEec--cCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEE
Confidence                  0000   0001133444455555555444  5799999999999877777   689999999999999999999


Q ss_pred             EeCCCcEEEEEEcCCCeeEEEeccC---------------------------------------cCceeEEEEEEecCCC
Q 019349          197 ASEQGTIIRVFLVSEATKSYSFRRG---------------------------------------TYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       197 ~s~dg~~irlwd~~~~~~~~~~~~~---------------------------------------~~~~~v~~l~fs~d~~  237 (342)
                      ++.+|. +++||..++..+..++-+                                       .+..+|++++|||||+
T Consensus       511 a~~~Gi-lkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~Dgr  589 (910)
T KOG1539|consen  511 AGADGI-LKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGR  589 (910)
T ss_pred             ccCcce-EEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCc
Confidence            999996 689999887754443210                                       1345699999999999


Q ss_pred             cccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeC-CcEEE
Q 019349          238 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN-GYFVE  316 (342)
Q Consensus       238 ~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-g~v~~  316 (342)
                         +|++++.|++|++||+.+...          +..++-+      +|      ...+.+.|.+++|++.+.| .-||+
T Consensus       590 ---WlisasmD~tIr~wDlpt~~l----------ID~~~vd------~~------~~sls~SPngD~LAT~Hvd~~gIyl  644 (910)
T KOG1539|consen  590 ---WLISASMDSTIRTWDLPTGTL----------IDGLLVD------SP------CTSLSFSPNGDFLATVHVDQNGIYL  644 (910)
T ss_pred             ---EEEEeecCCcEEEEeccCcce----------eeeEecC------Cc------ceeeEECCCCCEEEEEEecCceEEE
Confidence               999999999999999987653          2222111      01      1233445666899999999 45888


Q ss_pred             EE
Q 019349          317 YI  318 (342)
Q Consensus       317 ~~  318 (342)
                      |.
T Consensus       645 Ws  646 (910)
T KOG1539|consen  645 WS  646 (910)
T ss_pred             EE
Confidence            85

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=8.5e-21  Score=171.43  Aligned_cols=232  Identities=12%  Similarity=0.135  Sum_probs=167.9

Q ss_pred             CCCeEEEEECCCCc------EEEEEecCC-ceEEEEE--cCCeEEEEE-CCeEEEEECCCC--ceeeEEeCCCCCceEEE
Q 019349           73 SPRRLCLFNTTTGT------ALRELNFLT-SILAVRL--NKKRLVIVL-REKTYIYDANTL--AILDTIDTVPNLKGLCA  140 (342)
Q Consensus        73 ~d~~i~iwd~~~~~------~~~~~~~~~-~v~~i~~--~~~~~~~~~-d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~  140 (342)
                      .|+.|++|+.....      .+.+++.+. -|.++.+  +.+.++.++ |-+|++|+....  -++.++.+|..  .+.|
T Consensus        45 RDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~D--YVkc  122 (735)
T KOG0308|consen   45 RDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKD--YVKC  122 (735)
T ss_pred             CCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccc--hhee
Confidence            59999999986533      244555443 4566554  344566666 789999999766  45666666655  4556


Q ss_pred             Eee-CCCccEEEEeCCCCccEEEEEEccCCc--ee--------EEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349          141 FSP-SLNACFLAVPASTTKGSVLVYNVMELH--SH--------CEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFL  208 (342)
Q Consensus       141 ~~~-~~~~~~l~~~~~~~~g~i~iwd~~~~~--~~--------~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd  208 (342)
                      +++ .++...+|++|  -|+.|.+||+.++.  .+        ..+. +|..+|.+++-++.|..+++|+..+. +|+||
T Consensus       123 la~~ak~~~lvaSgG--LD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~-lr~wD  199 (735)
T KOG0308|consen  123 LAYIAKNNELVASGG--LDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKD-LRLWD  199 (735)
T ss_pred             eeecccCceeEEecC--CCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccc-eEEec
Confidence            666 56667777777  68999999998762  22        2233 88999999999999999999999985 69999


Q ss_pred             cCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccc
Q 019349          209 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPAD  288 (342)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (342)
                      -++++++..++.  |...|..+..++||+   .++++|+||+|++||+.......+          +.-+ ...+|....
T Consensus       200 prt~~kimkLrG--HTdNVr~ll~~dDGt---~~ls~sSDgtIrlWdLgqQrCl~T----------~~vH-~e~VWaL~~  263 (735)
T KOG0308|consen  200 PRTCKKIMKLRG--HTDNVRVLLVNDDGT---RLLSASSDGTIRLWDLGQQRCLAT----------YIVH-KEGVWALQS  263 (735)
T ss_pred             cccccceeeeec--cccceEEEEEcCCCC---eEeecCCCceEEeeeccccceeee----------EEec-cCceEEEee
Confidence            999999999974  356799999999999   999999999999999987765332          2111 122565543


Q ss_pred             cceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCCeeeeEEEeeeec
Q 019349          289 HHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNL  337 (342)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~~~~~  337 (342)
                                .+.-.++.+|+.||.|+.=++...  .+....-.+++++
T Consensus       264 ----------~~sf~~vYsG~rd~~i~~Tdl~n~--~~~tlick~daPv  300 (735)
T KOG0308|consen  264 ----------SPSFTHVYSGGRDGNIYRTDLRNP--AKSTLICKEDAPV  300 (735)
T ss_pred             ----------CCCcceEEecCCCCcEEecccCCc--hhheEeecCCCch
Confidence                      223378999999999987766543  4434444555555

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.86  E-value=3.6e-19  Score=148.47  Aligned_cols=237  Identities=11%  Similarity=0.110  Sum_probs=172.2

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEE--EeeCCEEEEEEcCCCC--eEEEEcCCCCCCCCCCeE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYE--RAVGAFSIVEMLYSSS--LLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~g~~~~~~d~~i   77 (342)
                      -+.|.++|++++.+  +.++|+|+.| .++|||......+-.  .|.+.+..+.+.+...  .++.++       .|+.|
T Consensus        39 ~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~s-------dDG~i  109 (362)
T KOG0294|consen   39 FSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGS-------DDGHI  109 (362)
T ss_pred             ccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeec-------CCCcE
Confidence            45788999999975  6889998765 589999877644322  2446666666554433  333332       59999


Q ss_pred             EEEECCCCcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           78 CLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      .+|+...=+++.++.. .+.|+.++++|..-+..+   |+.++.||+-.++.-........+. .  +.++|.+.+++..
T Consensus       110 ~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at-~--v~w~~~Gd~F~v~  186 (362)
T KOG0294|consen  110 IIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKAT-L--VSWSPQGDHFVVS  186 (362)
T ss_pred             EEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcce-e--eEEcCCCCEEEEE
Confidence            9999988888887764 458999999997543332   8899999998887555544433322 2  4555667777776


Q ss_pred             CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE-
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF-  232 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f-  232 (342)
                      ++   ..|-||.+.+.+....+.- ...+.|+.|. ++..|++|++|+. |++||..++....+|..+  ..+|-++.+ 
T Consensus       187 ~~---~~i~i~q~d~A~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~-i~~~D~ds~~~~~~~~AH--~~RVK~i~~~  258 (362)
T KOG0294|consen  187 GR---NKIDIYQLDNASVFREIEN-PKRILCATFL-DGSELLVGGDNEW-ISLKDTDSDTPLTEFLAH--ENRVKDIASY  258 (362)
T ss_pred             ec---cEEEEEecccHhHhhhhhc-cccceeeeec-CCceEEEecCCce-EEEeccCCCccceeeecc--hhheeeeEEE
Confidence            63   5699999988776555443 2457777775 5678999999986 689999998888888643  667888874 


Q ss_pred             -ecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349          233 -GQSMQFQDILVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       233 -s~d~~~~~~l~~~s~dg~i~vwd~~~~~~~  262 (342)
                       .|++.   +|+++|+||.|+|||++...+.
T Consensus       259 ~~~~~~---~lvTaSSDG~I~vWd~~~~~k~  286 (362)
T KOG0294|consen  259 TNPEHE---YLVTASSDGFIKVWDIDMETKK  286 (362)
T ss_pred             ecCCce---EEEEeccCceEEEEEccccccC
Confidence             46677   9999999999999999877543

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.85  E-value=2.8e-19  Score=147.84  Aligned_cols=208  Identities=13%  Similarity=0.152  Sum_probs=148.4

Q ss_pred             EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc------------EEEEEecC----CceEEEEEcC-
Q 019349           42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT------------ALRELNFL----TSILAVRLNK-  104 (342)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~------------~~~~~~~~----~~v~~i~~~~-  104 (342)
                      ...|.+.+..+.+........+.|+      .|+.|.+||+++..            ++-..+++    -.|.++.|.| 
T Consensus        39 ~r~HgGsvNsL~id~tegrymlSGg------adgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~  112 (397)
T KOG4283|consen   39 VRPHGGSVNSLQIDLTEGRYMLSGG------ADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPI  112 (397)
T ss_pred             eccCCCccceeeeccccceEEeecC------CCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeee
Confidence            3445677777777666555556665      69999999997643            11111121    1567777755 


Q ss_pred             -CeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCC
Q 019349          105 -KRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAP  181 (342)
Q Consensus       105 -~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~  181 (342)
                       .+++..+  |.++++||.++.+....+..+.. ..-.+++|-.....|+.+|. .+-.|++.|+.+|...+++.+|.+.
T Consensus       113 DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~-VYshamSp~a~sHcLiA~gt-r~~~VrLCDi~SGs~sH~LsGHr~~  190 (397)
T KOG4283|consen  113 DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGK-VYSHAMSPMAMSHCLIAAGT-RDVQVRLCDIASGSFSHTLSGHRDG  190 (397)
T ss_pred             cCceeecccccceEEEeecccceeeEEeecCce-eehhhcChhhhcceEEEEec-CCCcEEEEeccCCcceeeeccccCc
Confidence             3555544  99999999999887777765432 12223443323233444443 5789999999999999999999999


Q ss_pred             eeEEEECCCCCE-EEEEeCCCcEEEEEEcCCC-eeEEEec------------cCcCceeEEEEEEecCCCcccEEEEEeC
Q 019349          182 LAAIVLSSNGMY-IATASEQGTIIRVFLVSEA-TKSYSFR------------RGTYPSTIFSLSFGQSMQFQDILVATSS  247 (342)
Q Consensus       182 v~~i~~s~dg~~-lat~s~dg~~irlwd~~~~-~~~~~~~------------~~~~~~~v~~l~fs~d~~~~~~l~~~s~  247 (342)
                      |.++.|+|...+ |||||.||+ ||+||++.. -++..+.            ...+.+++++++|+.|+.   +|++.+.
T Consensus       191 vlaV~Wsp~~e~vLatgsaDg~-irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~---~l~~~gt  266 (397)
T KOG4283|consen  191 VLAVEWSPSSEWVLATGSADGA-IRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR---YLASCGT  266 (397)
T ss_pred             eEEEEeccCceeEEEecCCCce-EEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccch---hhhhccC
Confidence            999999997765 899999998 599999754 2322222            223445799999999999   9999999


Q ss_pred             CCcEEEEecCCCCC
Q 019349          248 SGSLHVFSPGFAIN  261 (342)
Q Consensus       248 dg~i~vwd~~~~~~  261 (342)
                      |..+++|+...++.
T Consensus       267 d~r~r~wn~~~G~n  280 (397)
T KOG4283|consen  267 DDRIRVWNMESGRN  280 (397)
T ss_pred             ccceEEeecccCcc
Confidence            99999999987754

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=4.8e-20  Score=148.63  Aligned_cols=239  Identities=15%  Similarity=0.207  Sum_probs=170.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC---cEEEE--EeeCCEEEEEEcCC--CCeEEEEcCCCCCCCCCC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG---RLCYE--RAVGAFSIVEMLYS--SSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~---~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~   75 (342)
                      +.|+.-|..+..+=-|++||+++.|+ ++||...+.   +++.+  .|.+++--+.+++.  +++++.++       .|+
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScs-------YDg   80 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCS-------YDG   80 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEee-------cCc
Confidence            45666677777777889999887776 699987654   33333  45578888888874  46666665       499


Q ss_pred             eEEEEECCCCcEEEEEe---cCCceEEEEEcCC--eEEE--EE-CCeEEEEECCCC-c-eeeEEeCCCCCceEEEEeeCC
Q 019349           76 RLCLFNTTTGTALRELN---FLTSILAVRLNKK--RLVI--VL-REKTYIYDANTL-A-ILDTIDTVPNLKGLCAFSPSL  145 (342)
Q Consensus        76 ~i~iwd~~~~~~~~~~~---~~~~v~~i~~~~~--~~~~--~~-d~~i~i~d~~~~-~-~~~~~~~~~~~~~~~~~~~~~  145 (342)
                      +|+||.-.+|+-.....   +...|++|++.|.  ++++  ++ ||.|.|.++.+. . ....+ ...++.++.++++.|
T Consensus        81 kVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki-~~aH~~GvnsVswap  159 (299)
T KOG1332|consen   81 KVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKI-VFAHEIGVNSVSWAP  159 (299)
T ss_pred             eEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhh-hhccccccceeeecC
Confidence            99999998886544333   3568999999775  3333  33 999999988653 1 11122 123445565666554


Q ss_pred             C---c-----------cEEEEeCCCCccEEEEEEccCCc--eeEEEecccCCeeEEEECCCC----CEEEEEeCCCcEEE
Q 019349          146 N---A-----------CFLAVPASTTKGSVLVYNVMELH--SHCEIDAHQAPLAAIVLSSNG----MYIATASEQGTIIR  205 (342)
Q Consensus       146 ~---~-----------~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~dg----~~lat~s~dg~~ir  205 (342)
                      .   +           ..|+++|  .|..|+||+..+++  ...++.+|.+.|+.+++.|.-    .+||++|+||++| 
T Consensus       160 a~~~g~~~~~~~~~~~krlvSgG--cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~vi-  236 (299)
T KOG1332|consen  160 ASAPGSLVDQGPAAKVKRLVSGG--CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVI-  236 (299)
T ss_pred             cCCCccccccCcccccceeeccC--CccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEE-
Confidence            3   2           4588888  58999999988763  345689999999999999964    5799999999987 


Q ss_pred             EEEcCCCee--EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          206 VFLVSEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       206 lwd~~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      ||-......  ..++. +..+..++.++||+.|.   +|++++.|+.|.+|.-.
T Consensus       237 Iwt~~~e~e~wk~tll-~~f~~~~w~vSWS~sGn---~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  237 IWTKDEEYEPWKKTLL-EEFPDVVWRVSWSLSGN---ILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEEecCccCccccccc-ccCCcceEEEEEecccc---EEEEecCCcEEEEEEeC
Confidence            998763211  11111 12355699999999998   99999999999999643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.85  E-value=5.4e-18  Score=149.41  Aligned_cols=272  Identities=14%  Similarity=0.139  Sum_probs=194.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      .-|.|++|.++|. +++|..+| +.||+..+.+....  .|.+++..+.++.++..+-  |+      .|++|..|| ..
T Consensus       247 k~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS--Gg------KDRki~~Wd-~~  316 (626)
T KOG2106|consen  247 KFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS--GG------KDRKIILWD-DN  316 (626)
T ss_pred             eEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee--cC------ccceEEecc-cc
Confidence            6799999999998 55777777 59999876654433  5668888888887765543  44      699999999 44


Q ss_pred             CcEEEEEecC---CceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349           85 GTALRELNFL---TSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (342)
Q Consensus        85 ~~~~~~~~~~---~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~  160 (342)
                      -+.++.++.+   +.|+.|+-.+..+++.+ .+.|..=+++++-.+..+ .  +......++.+|....+++++  .|+.
T Consensus       317 y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~-g--h~delwgla~hps~~q~~T~g--qdk~  391 (626)
T KOG2106|consen  317 YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQ-G--HGDELWGLATHPSKNQLLTCG--QDKH  391 (626)
T ss_pred             ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEE-e--cccceeeEEcCCChhheeecc--Ccce
Confidence            4555555554   47888888776677766 567776677766333222 2  233678888888888999998  7999


Q ss_pred             EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCccc
Q 019349          161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  240 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~  240 (342)
                      +++|+  ..+++-+.. -..+..|+.|+|.| .||.|...|.-+ +.|.++...+..-   ...+++.+|+|+|+|.   
T Consensus       392 v~lW~--~~k~~wt~~-~~d~~~~~~fhpsg-~va~Gt~~G~w~-V~d~e~~~lv~~~---~d~~~ls~v~ysp~G~---  460 (626)
T KOG2106|consen  392 VRLWN--DHKLEWTKI-IEDPAECADFHPSG-VVAVGTATGRWF-VLDTETQDLVTIH---TDNEQLSVVRYSPDGA---  460 (626)
T ss_pred             EEEcc--CCceeEEEE-ecCceeEeeccCcc-eEEEeeccceEE-EEecccceeEEEE---ecCCceEEEEEcCCCC---
Confidence            99999  334443332 35788999999999 999999999865 9999885554433   2256799999999999   


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          241 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       241 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      +||.||.|+.|+||.+......-+  +-..+.++   ....--|+++.              ++|.+-+.|-.+-.|  .
T Consensus       461 ~lAvgs~d~~iyiy~Vs~~g~~y~--r~~k~~gs---~ithLDwS~Ds--------------~~~~~~S~d~eiLyW--~  519 (626)
T KOG2106|consen  461 FLAVGSHDNHIYIYRVSANGRKYS--RVGKCSGS---PITHLDWSSDS--------------QFLVSNSGDYEILYW--K  519 (626)
T ss_pred             EEEEecCCCeEEEEEECCCCcEEE--EeeeecCc---eeEEeeecCCC--------------ceEEeccCceEEEEE--c
Confidence            999999999999999987643211  11111111   11122455544              889999999888888  5


Q ss_pred             cCCCCe
Q 019349          321 INNCCE  326 (342)
Q Consensus       321 ~~~~~~  326 (342)
                      +.++.+
T Consensus       520 ~~~~~~  525 (626)
T KOG2106|consen  520 PSECKQ  525 (626)
T ss_pred             cccCcc
Confidence            555543

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.1e-19  Score=158.62  Aligned_cols=235  Identities=14%  Similarity=0.128  Sum_probs=170.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      +++|.+++-+|+|.+|+.|+..+ +.+|.+.+|.++...  |...+.++.+.-++..++..|       .|+.|.+|++.
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgs-------kDg~V~vW~l~  153 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGS-------KDGAVLVWLLT  153 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecC-------CCccEEEEEEE
Confidence            57899999999999999997776 799999999887544  445666666655555554433       69999999964


Q ss_pred             C---------CcEEEEEecCC-ceEEEEEcCC----eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349           84 T---------GTALRELNFLT-SILAVRLNKK----RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        84 ~---------~~~~~~~~~~~-~v~~i~~~~~----~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
                      .         -+++..+..+. +|+++.....    +++.++ |.++++||+..+.++.++..+   ..+.++..+|.++
T Consensus       154 ~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp---~si~av~lDpae~  230 (476)
T KOG0646|consen  154 DLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP---SSIKAVALDPAER  230 (476)
T ss_pred             eecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC---CcceeEEEccccc
Confidence            2         23444444333 8888887543    455555 889999999999999888653   3466667777777


Q ss_pred             EEEEeCCCCccEEEEEEccCC----------------ceeEEEecccC--CeeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 019349          149 FLAVPASTTKGSVLVYNVMEL----------------HSHCEIDAHQA--PLAAIVLSSNGMYIATASEQGTIIRVFLVS  210 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~----------------~~~~~~~~h~~--~v~~i~~s~dg~~lat~s~dg~~irlwd~~  210 (342)
                      .+.+++  .+|.|.+.++.+.                ..+..+.+|.+  +|+|++++-||++|++|+.||++ +|||+.
T Consensus       231 ~~yiGt--~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~V-cvWdi~  307 (476)
T KOG0646|consen  231 VVYIGT--EEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKV-CVWDIY  307 (476)
T ss_pred             EEEecC--CcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCE-EEEecc
Confidence            776665  6899999886432                23456778988  99999999999999999999985 799999


Q ss_pred             CCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          211 EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      +.+++.++..  ..++|+.+.+.|=.+.  .+..-...-.+-.|+++.
T Consensus       308 S~Q~iRtl~~--~kgpVtnL~i~~~~~~--~~l~~~~~ps~~~~~lkr  351 (476)
T KOG0646|consen  308 SKQCIRTLQT--SKGPVTNLQINPLERG--IILFEHKQPSLPNPHLKR  351 (476)
T ss_pred             hHHHHHHHhh--hccccceeEeeccccc--eecccccCccCCchHhhc
Confidence            9999887742  3567888888665430  222223333455555543

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.2e-18  Score=150.29  Aligned_cols=283  Identities=14%  Similarity=0.160  Sum_probs=193.0

Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC--cEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            2 SNQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         2 ~~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      ...+..++|+++.|+|....|.+++-++ +++|-++..  .++...+.  -++....+.+.+.-.++.++      ....
T Consensus       208 a~~ps~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~------rrky  281 (514)
T KOG2055|consen  208 AAHPSHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSG------RRKY  281 (514)
T ss_pred             cCCcCcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecc------cceE
Confidence            4556788999999999999877766655 799987543  33434333  45666677777664555554      3678


Q ss_pred             EEEEECCCCcEEEEEec----CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccE
Q 019349           77 LCLFNTTTGTALRELNF----LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (342)
Q Consensus        77 i~iwd~~~~~~~~~~~~----~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
                      +..||+.+.+...--..    ...+....++++..+++.   .|.|++....+++.+.++....   .+..+.++.++..
T Consensus       282 ~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG---~v~~~~fsSdsk~  358 (514)
T KOG2055|consen  282 LYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEG---VVSDFTFSSDSKE  358 (514)
T ss_pred             EEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeecc---EEeeEEEecCCcE
Confidence            99999988764432211    124555666666544444   6789999989998888886543   3556666677777


Q ss_pred             EEEeCCCCccEEEEEEccCCceeEEEecccC-CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC------eeEEEeccCc
Q 019349          150 LAVPASTTKGSVLVYNVMELHSHCEIDAHQA-PLAAIVLSSNGMYIATASEQGTIIRVFLVSEA------TKSYSFRRGT  222 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~-~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~------~~~~~~~~~~  222 (342)
                      |..++  .+|.|.+||++...+++.+....+ .=++++.|++|.+||+||..|- +.|||..+.      +++..+..  
T Consensus       359 l~~~~--~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~Gi-VNIYd~~s~~~s~~PkPik~~dN--  433 (514)
T KOG2055|consen  359 LLASG--GTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGI-VNIYDGNSCFASTNPKPIKTVDN--  433 (514)
T ss_pred             EEEEc--CCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcce-EEEeccchhhccCCCCchhhhhh--
Confidence            77777  479999999999998888763211 2367888999999999999984 699996542      23333321  


Q ss_pred             CceeEEEEEEecCCCcccEEEEEeC--CCcEEEEecCCCCCCCCCCCccccccccccccccccccccccce-eeeccCCC
Q 019349          223 YPSTIFSLSFGQSMQFQDILVATSS--SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHV-LRNAFPAG  299 (342)
Q Consensus       223 ~~~~v~~l~fs~d~~~~~~l~~~s~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  299 (342)
                      -...|++|.|+||.+   +||.+|.  ++.+++--+.....          +.         =|-+...++ .+..++|.
T Consensus       434 Ltt~Itsl~Fn~d~q---iLAiaS~~~knalrLVHvPS~TV----------Fs---------NfP~~n~~vg~vtc~aFS  491 (514)
T KOG2055|consen  434 LTTAITSLQFNHDAQ---ILAIASRVKKNALRLVHVPSCTV----------FS---------NFPTSNTKVGHVTCMAFS  491 (514)
T ss_pred             hheeeeeeeeCcchh---hhhhhhhccccceEEEeccceee----------ec---------cCCCCCCcccceEEEEec
Confidence            123599999999999   8988875  56677776543321          11         111111111 12345677


Q ss_pred             ccccEEEEEEeCCcEEEEEEe
Q 019349          300 VKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       300 ~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      |.+.++++|..+|.+.+|.+.
T Consensus       492 P~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  492 PNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             CCCceEEeecCCCceeeEeec
Confidence            877999999999999999874

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.2e-18  Score=145.43  Aligned_cols=216  Identities=11%  Similarity=0.140  Sum_probs=156.3

Q ss_pred             CCCeEEEEECCCCcEEEEE-ecCCceEEEEEcCCe----EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC
Q 019349           73 SPRRLCLFNTTTGTALREL-NFLTSILAVRLNKKR----LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN  146 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~-~~~~~v~~i~~~~~~----~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (342)
                      .|.+|+|||+++...+..+ .+.+.|+++.|.+..    ++.++ ||.|.+|+..+..++.+++.|...  +..++.+|.
T Consensus        61 sDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~--Vt~lsiHPS  138 (362)
T KOG0294|consen   61 SDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ--VTDLSIHPS  138 (362)
T ss_pred             CCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc--cceeEecCC
Confidence            6999999999998888765 456689999997754    55555 889999999999999999888775  556666666


Q ss_pred             ccEEEEeCCCCccEEEEEEccCCceeEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCce
Q 019349          147 ACFLAVPASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  225 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~  225 (342)
                      +.+-.+.|  .|+.+++||+.+++.-..+. .|..  +.|.|+|.|.+++.++.++  |-+|.+.+.....++.   .+.
T Consensus       139 ~KLALsVg--~D~~lr~WNLV~Gr~a~v~~L~~~a--t~v~w~~~Gd~F~v~~~~~--i~i~q~d~A~v~~~i~---~~~  209 (362)
T KOG0294|consen  139 GKLALSVG--GDQVLRTWNLVRGRVAFVLNLKNKA--TLVSWSPQGDHFVVSGRNK--IDIYQLDNASVFREIE---NPK  209 (362)
T ss_pred             CceEEEEc--CCceeeeehhhcCccceeeccCCcc--eeeEEcCCCCEEEEEeccE--EEEEecccHhHhhhhh---ccc
Confidence            66655666  58999999999887644443 2333  3499999999999999885  4699998876655543   234


Q ss_pred             eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEE
Q 019349          226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  305 (342)
Q Consensus       226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      ++.++-|-..+    .|++|.+|+.|.+||-+...+...          ++       .++.  ++.....-..+...+|
T Consensus       210 r~l~~~~l~~~----~L~vG~d~~~i~~~D~ds~~~~~~----------~~-------AH~~--RVK~i~~~~~~~~~~l  266 (362)
T KOG0294|consen  210 RILCATFLDGS----ELLVGGDNEWISLKDTDSDTPLTE----------FL-------AHEN--RVKDIASYTNPEHEYL  266 (362)
T ss_pred             cceeeeecCCc----eEEEecCCceEEEeccCCCcccee----------ee-------cchh--heeeeEEEecCCceEE
Confidence            57777775444    799999999999999876443211          11       1111  1111111123344799


Q ss_pred             EEEEeCCcEEEEEEecC
Q 019349          306 SVITYNGYFVEYIFSIN  322 (342)
Q Consensus       306 ~~~~~dg~v~~~~~~~~  322 (342)
                      +++|+||.|++|+++.+
T Consensus       267 vTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  267 VTASSDGFIKVWDIDME  283 (362)
T ss_pred             EEeccCceEEEEEcccc
Confidence            99999999999999887

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.5e-18  Score=144.97  Aligned_cols=286  Identities=10%  Similarity=0.147  Sum_probs=197.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..+...|..++-......+.+++.|- .+||.+++++.+  |..|.+.+..+.+..+..+++..+|       |.+-+||
T Consensus       145 ~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSG-------D~taHIW  217 (481)
T KOG0300|consen  145 EGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASG-------DETAHIW  217 (481)
T ss_pred             cccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccC-------CcchHHH
Confidence            35777888888877777777777765 599999999776  5556688888888887777777776       7888888


Q ss_pred             ECC------CC--------c--------------------------EEEEEe-cCCceEEEEE--cCCeEEEEE-CCeEE
Q 019349           81 NTT------TG--------T--------------------------ALRELN-FLTSILAVRL--NKKRLVIVL-REKTY  116 (342)
Q Consensus        81 d~~------~~--------~--------------------------~~~~~~-~~~~v~~i~~--~~~~~~~~~-d~~i~  116 (342)
                      ...      +.        +                          ++..+. +...|.+..|  ..+.++.++ |.+..
T Consensus       218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAn  297 (481)
T KOG0300|consen  218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTAN  297 (481)
T ss_pred             HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccce
Confidence            721      10        0                          001111 0112222233  234445555 89999


Q ss_pred             EEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECCCCCEEE
Q 019349          117 IYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNGMYIA  195 (342)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg~~la  195 (342)
                      +||++++.+++.+..|...-.-  .+.+|...++++++  .|-+.++||.+.. ..+..|++|...|+++.|..| ..++
T Consensus       298 lwDVEtge~v~~LtGHd~ELtH--cstHptQrLVvTsS--rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vV  372 (481)
T KOG0300|consen  298 LWDVETGEVVNILTGHDSELTH--CSTHPTQRLVVTSS--RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVV  372 (481)
T ss_pred             eeeeccCceeccccCcchhccc--cccCCcceEEEEec--cCceeEeccchhhcceeeeecccccceeEEEEecC-Ccee
Confidence            9999999999998877664333  44566666777766  5899999999743 457789999999999999886 4599


Q ss_pred             EEeCCCcEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccc
Q 019349          196 TASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS  274 (342)
Q Consensus       196 t~s~dg~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~  274 (342)
                      +||+|.+ ||+||+++.. .+.+++.   ..+++.++.+..+.   .+|.--++..|++||+......+-+. .+..  +
T Consensus       373 SgSDDrT-vKvWdLrNMRsplATIRt---dS~~NRvavs~g~~---iIAiPhDNRqvRlfDlnG~RlaRlPr-tsRq--g  442 (481)
T KOG0300|consen  373 SGSDDRT-VKVWDLRNMRSPLATIRT---DSPANRVAVSKGHP---IIAIPHDNRQVRLFDLNGNRLARLPR-TSRQ--G  442 (481)
T ss_pred             ecCCCce-EEEeeeccccCcceeeec---CCccceeEeecCCc---eEEeccCCceEEEEecCCCccccCCc-cccc--c
Confidence            9999987 6999998764 5666643   34588899998887   77777777889999998765433211 1100  0


Q ss_pred             cccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349          275 ILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                      +---...+.|..+-            ....|++++.|..+.-|.++...
T Consensus       443 HrRMV~c~AW~eeh------------p~cnLftcGFDR~v~gW~in~p~  479 (481)
T KOG0300|consen  443 HRRMVTCCAWLEEH------------PACNLFTCGFDRMVAGWKINTPT  479 (481)
T ss_pred             cceeeeeeeccccC------------cccccccccccceeeeeEecccC
Confidence            00000123454321            12679999999999999887643

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.83  E-value=8.2e-21  Score=173.34  Aligned_cols=211  Identities=14%  Similarity=0.217  Sum_probs=165.3

Q ss_pred             EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEec-CCceEEEEEcCCeEE
Q 019349           30 FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKRLV  108 (342)
Q Consensus        30 ~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~  108 (342)
                      +++|+....    ..|...+....+ ..+....+.||      .+..+-+|......++..+.. ..+|.++.|+....+
T Consensus        16 Lr~~~~~~~----~~hsaav~~lk~-~~s~r~~~~Gg------~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~L   84 (825)
T KOG0267|consen   16 LRVWDTREF----VAHSAAVGCLKI-RKSSRSLVTGG------EDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERL   84 (825)
T ss_pred             cccccchhh----hhhhhhhceeee-eccceeeccCC------CceeeccccccCCchhheeeccCCcceeeecCcchhh
Confidence            577775432    112223333444 23334444554      478888999988878877654 559999999887655


Q ss_pred             EEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEE
Q 019349          109 IVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAI  185 (342)
Q Consensus       109 ~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i  185 (342)
                      ++.   +++|++||++..+.++++..+..  .++.+.++|-+.+.|.++  .|..+.+||.+...+.+.+.+|...|.++
T Consensus        85 laagsasgtiK~wDleeAk~vrtLtgh~~--~~~sv~f~P~~~~~a~gS--tdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l  160 (825)
T KOG0267|consen   85 LAAGSASGTIKVWDLEEAKIVRTLTGHLL--NITSVDFHPYGEFFASGS--TDTDLKIWDIRKKGCSHTYKSHTRVVDVL  160 (825)
T ss_pred             hcccccCCceeeeehhhhhhhhhhhcccc--CcceeeeccceEEecccc--ccccceehhhhccCceeeecCCcceeEEE
Confidence            544   88999999999998888866544  456666777777876554  68999999999888999999999999999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          186 VLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       186 ~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +|+|+|+++++|++|.+ +++||...|+.+.+|..  +.+.+.++.|+|.+-   +|+.||.|++|++||+++...
T Consensus       161 ~lsP~Gr~v~~g~ed~t-vki~d~~agk~~~ef~~--~e~~v~sle~hp~e~---Lla~Gs~d~tv~f~dletfe~  230 (825)
T KOG0267|consen  161 RLSPDGRWVASGGEDNT-VKIWDLTAGKLSKEFKS--HEGKVQSLEFHPLEV---LLAPGSSDRTVRFWDLETFEV  230 (825)
T ss_pred             eecCCCceeeccCCcce-eeeeccccccccccccc--ccccccccccCchhh---hhccCCCCceeeeeccceeEE
Confidence            99999999999999986 69999999999999964  356789999999998   899999999999999996543

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.83  E-value=7.8e-19  Score=155.00  Aligned_cols=238  Identities=11%  Similarity=0.141  Sum_probs=168.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE-----------eeCCEE---EEEEcCCCCeEEEEcCCC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER-----------AVGAFS---IVEMLYSSSLLAIVGAGE   68 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~-----------~~~~~~---~~~~~~~~~~~~~~~~g~   68 (342)
                      +.....|++++|++.|..|++.+... .+|+|-+..++....           ..++++   +.+|.+...-.++..+  
T Consensus       211 P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s--  288 (641)
T KOG0772|consen  211 PCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCS--  288 (641)
T ss_pred             cccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEec--
Confidence            34456899999999998876665555 599997655443211           123333   3345554433333333  


Q ss_pred             CCCCCCCeEEEEECCCCc-EEEEEec------CCceEEEEEcCCeEEEEE---CCeEEEEECCCCce--eeEE-eCCCCC
Q 019349           69 QPSLSPRRLCLFNTTTGT-ALRELNF------LTSILAVRLNKKRLVIVL---REKTYIYDANTLAI--LDTI-DTVPNL  135 (342)
Q Consensus        69 ~~~~~d~~i~iwd~~~~~-~~~~~~~------~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~--~~~~-~~~~~~  135 (342)
                          .|++++|||+.+.+ ....+..      .-++..++|+++...+|.   ||.|.+|+..+...  ...+ +.|...
T Consensus       289 ----~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g  364 (641)
T KOG0772|consen  289 ----YDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG  364 (641)
T ss_pred             ----CCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC
Confidence                59999999986543 3333332      126789999998766654   99999999865422  2222 445555


Q ss_pred             ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc-eeEEEecc--cCCeeEEEECCCCCEEEEEeC------CCcEEEE
Q 019349          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH-SHCEIDAH--QAPLAAIVLSSNGMYIATASE------QGTIIRV  206 (342)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h--~~~v~~i~~s~dg~~lat~s~------dg~~irl  206 (342)
                      ..+.+++++.++++|++-|  .|+++++||+++.+ ++....+-  .-+-+.++|||+.++|+||..      .|++ .+
T Consensus       365 ~~Itsi~FS~dg~~LlSRg--~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L-~f  441 (641)
T KOG0772|consen  365 QDITSISFSYDGNYLLSRG--FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTL-FF  441 (641)
T ss_pred             CceeEEEeccccchhhhcc--CCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceE-EE
Confidence            6899999999999999888  68999999998765 45444332  235577889999999999864      3654 69


Q ss_pred             EEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          207 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       207 wd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      ||..+-+.++++.-  ..+.|..+.|+|.-+   .|.+|+.||++|||=
T Consensus       442 ~d~~t~d~v~ki~i--~~aSvv~~~WhpkLN---Qi~~gsgdG~~~vyY  485 (641)
T KOG0772|consen  442 FDRMTLDTVYKIDI--STASVVRCLWHPKLN---QIFAGSGDGTAHVYY  485 (641)
T ss_pred             EeccceeeEEEecC--CCceEEEEeecchhh---heeeecCCCceEEEE
Confidence            99999888888753  356688999999876   899999999999984

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.82  E-value=1.1e-18  Score=145.40  Aligned_cols=239  Identities=13%  Similarity=0.109  Sum_probs=187.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE----EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC----YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .|..+|+++.|+|....|++|+.|+ +++||.......    +-.+...+..+.+.+++.++++...       -.++++
T Consensus       170 DH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTd-------Hp~~rl  242 (430)
T KOG0640|consen  170 DHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTD-------HPTLRL  242 (430)
T ss_pred             hccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecC-------CCceeE
Confidence            4667899999999999999999887 699998654211    1123366778888888888876553       679999


Q ss_pred             EECCCCcEEEEEe----cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349           80 FNTTTGTALRELN----FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (342)
Q Consensus        80 wd~~~~~~~~~~~----~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  152 (342)
                      ||+.+-+|.....    +...|.++..++...+.++   ||.|++||--+.++++++........+|+.-+..++.++.+
T Consensus       243 Ydv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLs  322 (430)
T KOG0640|consen  243 YDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILS  322 (430)
T ss_pred             EeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEee
Confidence            9999998876553    3458999999887544433   99999999999999999876666677888888889999999


Q ss_pred             eCCCCccEEEEEEccCCceeEEEeccc-----CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE
Q 019349          153 PASTTKGSVLVYNVMELHSHCEIDAHQ-----APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  227 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~~~~~~~~h~-----~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v  227 (342)
                      +|  .|..|++|++.++.++..+.+..     .--+...|+....+++.-.+...-+.-||.+++..+..+..+ |.+.+
T Consensus       323 SG--~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slg-Hn~a~  399 (430)
T KOG0640|consen  323 SG--KDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLG-HNGAV  399 (430)
T ss_pred             cC--CcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccC-CCCCc
Confidence            98  68999999999999988876431     112334588888888876655444568999999877666555 45678


Q ss_pred             EEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349          228 FSLSFGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       228 ~~l~fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      ..+.-||.+.   -+.++|.|..+++|--
T Consensus       400 R~i~HSP~~p---~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  400 RWIVHSPVEP---AFMTCSDDFRARFWYR  425 (430)
T ss_pred             eEEEeCCCCC---ceeeecccceeeeeee
Confidence            9999999998   8999999999999963

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=3e-18  Score=146.11  Aligned_cols=181  Identities=11%  Similarity=0.167  Sum_probs=128.4

Q ss_pred             CCCeEEEEECCCC----------------cEEEEEec-CCceEEEEEcCC--eEEEEEC--CeEEEEECCCCce-eeEEe
Q 019349           73 SPRRLCLFNTTTG----------------TALRELNF-LTSILAVRLNKK--RLVIVLR--EKTYIYDANTLAI-LDTID  130 (342)
Q Consensus        73 ~d~~i~iwd~~~~----------------~~~~~~~~-~~~v~~i~~~~~--~~~~~~d--~~i~i~d~~~~~~-~~~~~  130 (342)
                      ..+.|+|||+...                +++.++.. ...=++++|+|-  +.++.+|  +.|++|...++.= +....
T Consensus       173 e~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~P  252 (440)
T KOG0302|consen  173 ENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRP  252 (440)
T ss_pred             ccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCcc
Confidence            4789999998532                22333332 224577888873  2233333  5899999877531 11111


Q ss_pred             CCCCCceEEEEeeCCCc-cEEEEeCCCCccEEEEEEccCCc---eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE
Q 019349          131 TVPNLKGLCAFSPSLNA-CFLAVPASTTKGSVLVYNVMELH---SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV  206 (342)
Q Consensus       131 ~~~~~~~~~~~~~~~~~-~~l~~~~~~~~g~i~iwd~~~~~---~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl  206 (342)
                      .-.+...+-.+.++|.. ..+|+++  -||+|+|||++.+.   ++ ..++|.+.|+.|.|+.+-.+||+|++||+ ++|
T Consensus       253 f~gH~~SVEDLqWSptE~~vfaScS--~DgsIrIWDiRs~~~~~~~-~~kAh~sDVNVISWnr~~~lLasG~DdGt-~~i  328 (440)
T KOG0302|consen  253 FTGHTKSVEDLQWSPTEDGVFASCS--CDGSIRIWDIRSGPKKAAV-STKAHNSDVNVISWNRREPLLASGGDDGT-LSI  328 (440)
T ss_pred             ccccccchhhhccCCccCceEEeee--cCceEEEEEecCCCcccee-EeeccCCceeeEEccCCcceeeecCCCce-EEE
Confidence            12233455566666643 3566666  58999999999883   33 34899999999999999889999999998 599


Q ss_pred             EEcCC---CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          207 FLVSE---ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       207 wd~~~---~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      ||+++   ++.+..|..  |.++|+++.|+|...  ..|++++.|+.|.|||+.....
T Consensus       329 wDLR~~~~~~pVA~fk~--Hk~pItsieW~p~e~--s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  329 WDLRQFKSGQPVATFKY--HKAPITSIEWHPHED--SVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             EEhhhccCCCcceeEEe--ccCCeeEEEeccccC--ceEEeccCCCcEEEEEeeccCC
Confidence            99975   567778864  467799999999765  3899999999999999976543

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.82  E-value=1e-17  Score=153.16  Aligned_cols=277  Identities=12%  Similarity=0.136  Sum_probs=190.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEE---EE--EeeCCEEEEEEcC-----------CCCeEEEEcCCCCCC
Q 019349            9 PVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLC---YE--RAVGAFSIVEMLY-----------SSSLLAIVGAGEQPS   71 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~---~~--~~~~~~~~~~~~~-----------~~~~~~~~~~g~~~~   71 (342)
                      .-.++.|++....|.+-.+| .+.|||+..-...   +.  .|...+--++..+           ....+.+++      
T Consensus       326 D~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCS------  399 (1080)
T KOG1408|consen  326 DAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCS------  399 (1080)
T ss_pred             ceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEec------
Confidence            34578999988888776554 6899998654221   11  1111111122111           112344555      


Q ss_pred             CCCCeEEEEECCCCc--EE-----EE-----E--------------------------ecCCceEEEEEcCCeEEEEE--
Q 019349           72 LSPRRLCLFNTTTGT--AL-----RE-----L--------------------------NFLTSILAVRLNKKRLVIVL--  111 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~--~~-----~~-----~--------------------------~~~~~v~~i~~~~~~~~~~~--  111 (342)
                       .|++|++||+..+.  .+     .+     +                          .....+++++++|++..+++  
T Consensus       400 -sD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD  478 (1080)
T KOG1408|consen  400 -SDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD  478 (1080)
T ss_pred             -CCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccC
Confidence             49999999987521  01     00     0                          00125789999999888877  


Q ss_pred             -CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC---CccEEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeE--
Q 019349          112 -REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL---NACFLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAA--  184 (342)
Q Consensus       112 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~--  184 (342)
                       .|.++||++...+....++.|..  .+.|+.++-   ...+||+++  .|.-|+|||+... .+++++.+|.+.|++  
T Consensus       479 r~GnlrVy~Lq~l~~~~~~eAHes--EilcLeyS~p~~~~kLLASas--rdRlIHV~Dv~rny~l~qtld~HSssITsvK  554 (1080)
T KOG1408|consen  479 RGGNLRVYDLQELEYTCFMEAHES--EILCLEYSFPVLTNKLLASAS--RDRLIHVYDVKRNYDLVQTLDGHSSSITSVK  554 (1080)
T ss_pred             ccCceEEEEehhhhhhhheecccc--eeEEEeecCchhhhHhhhhcc--CCceEEEEecccccchhhhhcccccceeEEE
Confidence             46999999999888777776655  456665542   346788777  5899999998543 345556666665555  


Q ss_pred             -----------------------------------------------EEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEE
Q 019349          185 -----------------------------------------------IVLSSNGMYIATASEQGTIIRVFLVSEATKSYS  217 (342)
Q Consensus       185 -----------------------------------------------i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~  217 (342)
                                                                     |++.|..+++++++.|.. |||||+.+|+..+.
T Consensus       555 Fa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn-irif~i~sgKq~k~  633 (1080)
T KOG1408|consen  555 FACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN-IRIFDIESGKQVKS  633 (1080)
T ss_pred             EeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc-eEEEeccccceeee
Confidence                                                           555666778888888876 69999999999999


Q ss_pred             eccCcC-ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeecc
Q 019349          218 FRRGTY-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAF  296 (342)
Q Consensus       218 ~~~~~~-~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (342)
                      |+.... .+...-+...|.+-   |||+.+.|.++.++|.-.++...+                     ..+|..+++.+
T Consensus       634 FKgs~~~eG~lIKv~lDPSgi---Y~atScsdktl~~~Df~sgEcvA~---------------------m~GHsE~VTG~  689 (1080)
T KOG1408|consen  634 FKGSRDHEGDLIKVILDPSGI---YLATSCSDKTLCFVDFVSGECVAQ---------------------MTGHSEAVTGV  689 (1080)
T ss_pred             ecccccCCCceEEEEECCCcc---EEEEeecCCceEEEEeccchhhhh---------------------hcCcchheeee
Confidence            975432 24566788999998   999999999999999877765332                     22334445555


Q ss_pred             CCCccccEEEEEEeCCcEEEEEEec
Q 019349          297 PAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       297 ~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      .|.++-+.|+++++||-|.+|.+..
T Consensus       690 kF~nDCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  690 KFLNDCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eecccchhheeecCCceEEEEECch
Confidence            6666778999999999999999853

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=3.7e-17  Score=148.73  Aligned_cols=242  Identities=15%  Similarity=0.158  Sum_probs=176.1

Q ss_pred             eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEE-EEec--CCceEEEEEcCC-eEEEEE-CCeEEEEEC
Q 019349           46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR-ELNF--LTSILAVRLNKK-RLVIVL-REKTYIYDA  120 (342)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~-~~~~--~~~v~~i~~~~~-~~~~~~-d~~i~i~d~  120 (342)
                      ..++..+++...++.+|+.-       .++.|.+|++..+=... .+..  ...|.+++|.+. +++.+. ++.|.-||+
T Consensus        25 Ps~I~slA~s~kS~~lAvsR-------t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl   97 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSR-------TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDL   97 (691)
T ss_pred             ccceEEEEEeccCCceeeec-------cCCcEEEEccCCCceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEec
Confidence            35666677777778877664       48999999998764332 2332  348999999854 455555 889999999


Q ss_pred             CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCcee--EEEecccCCeeEEEECCCCCEEEEEe
Q 019349          121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--CEIDAHQAPLAAIVLSSNGMYIATAS  198 (342)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~--~~~~~h~~~v~~i~~s~dg~~lat~s  198 (342)
                      .+++....++.  +...+.+++.+|.+..++.+.  .||.+..++...++..  ..+...++.|.+++|+|++..||+||
T Consensus        98 ~~lk~~~~~d~--~gg~IWsiai~p~~~~l~Igc--ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs  173 (691)
T KOG2048|consen   98 HTLKQKYNIDS--NGGAIWSIAINPENTILAIGC--DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS  173 (691)
T ss_pred             ccCceeEEecC--CCcceeEEEeCCccceEEeec--CCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence            99988877754  344688888888887887775  5897777777766543  34555678999999999999999999


Q ss_pred             CCCcEEEEEEcCCCeeEEEeccC-----c-CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccc
Q 019349          199 EQGTIIRVFLVSEATKSYSFRRG-----T-YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSIL  272 (342)
Q Consensus       199 ~dg~~irlwd~~~~~~~~~~~~~-----~-~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~  272 (342)
                      .||. ||+||+.+++.++....+     . .+.-|+++.|-.|+.    |++|.+.|+|++||...+...++        
T Consensus       174 ~Dg~-Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t----I~sgDS~G~V~FWd~~~gTLiqS--------  240 (691)
T KOG2048|consen  174 IDGV-IRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST----IASGDSAGTVTFWDSIFGTLIQS--------  240 (691)
T ss_pred             cCce-EEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc----EEEecCCceEEEEcccCcchhhh--------
Confidence            9995 799999999877632211     1 234489999988885    99999999999999877654331        


Q ss_pred             cccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCC
Q 019349          273 GSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC  324 (342)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~  324 (342)
                        +..           |..-+..++...+.+++++++.|+.+..|.....+.
T Consensus       241 --~~~-----------h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~  279 (691)
T KOG2048|consen  241 --HSC-----------HDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS  279 (691)
T ss_pred             --hhh-----------hhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc
Confidence              100           001112223344458999999999999999877654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.82  E-value=2.2e-18  Score=149.65  Aligned_cols=234  Identities=10%  Similarity=0.112  Sum_probs=156.3

Q ss_pred             CCCEEEEEcCCc-EEEEeCCCCc---EEEEE------------------eeCCEEEEEEcCCCC-eEEEEcCCCCCCCCC
Q 019349           18 DNSGFALSTKDG-FKIFDSSTGR---LCYER------------------AVGAFSIVEMLYSSS-LLAIVGAGEQPSLSP   74 (342)
Q Consensus        18 d~~~la~g~~~g-~~v~d~~~~~---~~~~~------------------~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~d   74 (342)
                      -|+++|+|+-+. +.|||++-..   ..+.+                  ..+.-++..+.++.. .-++++++     .|
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgs-----aD  265 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGS-----AD  265 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecC-----CC
Confidence            467999998876 6999975321   00110                  011111222333221 12344442     69


Q ss_pred             CeEEEEECCCCcEEEEEec-CCceEEEEEcCCe---EEEEE-CCeEEEEECCCCc-eeeEEeCCCCCceEEEEeeCCCcc
Q 019349           75 RRLCLFNTTTGTALRELNF-LTSILAVRLNKKR---LVIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~---~~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
                      ++|++||+.++++..++.+ ..+|.++.|++..   ++..+ |+++.++|.+... .-..+.....   +--+.+++...
T Consensus       266 ~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~---VEkv~w~~~se  342 (463)
T KOG0270|consen  266 KTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE---VEKVAWDPHSE  342 (463)
T ss_pred             ceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc---eEEEEecCCCc
Confidence            9999999999999999985 4599999998763   33333 8999999998532 2222322222   33344444444


Q ss_pred             EEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCcee
Q 019349          149 FLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST  226 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~  226 (342)
                      ..+.++. .||+|+-+|+++. +++.++++|.++|.+|++++. -.+|+|+|.|+. +++|++..-..-....+...-+.
T Consensus       343 ~~f~~~t-ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~-Vklw~~~~~~~~~v~~~~~~~~r  420 (463)
T KOG0270|consen  343 NSFFVST-DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKV-VKLWKFDVDSPKSVKEHSFKLGR  420 (463)
T ss_pred             eeEEEec-CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccce-EEEEeecCCCCcccccccccccc
Confidence            4444444 6999999999876 899999999999999999874 468999999986 59999864332111111112234


Q ss_pred             EEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      ..|.++.|+-.+  +||.|+..+.++|||+.+..+.+
T Consensus       421 l~c~~~~~~~a~--~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  421 LHCFALDPDVAF--TLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             eeecccCCCcce--EEEecCccceEEEeecccChhHH
Confidence            788899998875  88999999999999998776544

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.82  E-value=5.3e-18  Score=147.90  Aligned_cols=221  Identities=16%  Similarity=0.198  Sum_probs=162.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .|...|.+++.|+||++||+|..+- +.||++++.+.+..  .|-+.+..+++....+-+..++.       |++|++|+
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~-------Drsvkvw~  272 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASA-------DRSVKVWS  272 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeec-------CCceEEEe
Confidence            4667899999999999999998877 58999999865543  45566777777777776666654       99999999


Q ss_pred             CCCCcEEEE-EecCCceEEEEE-cCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           82 TTTGTALRE-LNFLTSILAVRL-NKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        82 ~~~~~~~~~-~~~~~~v~~i~~-~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      +.....+.+ +.++..|.+|.. +..+.+.+.  |.++++|++.....+ .+..+......++|-  .+ ..+++++  .
T Consensus       273 ~~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesql-ifrg~~~sidcv~~I--n~-~HfvsGS--d  346 (479)
T KOG0299|consen  273 IDQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQL-IFRGGEGSIDCVAFI--ND-EHFVSGS--D  346 (479)
T ss_pred             hhHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEecccccee-eeeCCCCCeeeEEEe--cc-cceeecc--C
Confidence            987766655 456778888876 445555554  889999999544222 233333222333332  22 3566666  6


Q ss_pred             ccEEEEEEccCCceeEEEe-ccc-----------CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC----eeEEEeccC
Q 019349          158 KGSVLVYNVMELHSHCEID-AHQ-----------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEA----TKSYSFRRG  221 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~-~h~-----------~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~----~~~~~~~~~  221 (342)
                      +|.|.+|++.+.+++.+.. +|.           ..|++++..|..+++|+||.+|. +|||-+.++    ++++.+.  
T Consensus       347 nG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~-vrLW~i~~g~r~i~~l~~ls--  423 (479)
T KOG0299|consen  347 NGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGC-VRLWKIEDGLRAINLLYSLS--  423 (479)
T ss_pred             CceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCc-eEEEEecCCccccceeeecc--
Confidence            9999999999988876653 232           27899999999999999999997 599999887    3445543  


Q ss_pred             cCceeEEEEEEecCCCcccEEEEE
Q 019349          222 TYPSTIFSLSFGQSMQFQDILVAT  245 (342)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~~~l~~~  245 (342)
                       -.+-|++|+|+++++   +|++|
T Consensus       424 -~~GfVNsl~f~~sgk---~ivag  443 (479)
T KOG0299|consen  424 -LVGFVNSLAFSNSGK---RIVAG  443 (479)
T ss_pred             -cccEEEEEEEccCCC---EEEEe
Confidence             245699999999998   77776

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.81  E-value=1.3e-18  Score=158.88  Aligned_cols=240  Identities=12%  Similarity=0.199  Sum_probs=176.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEE--EEeeCCEEEEEEcCCC-CeEEEEcCCCCCCCCCCeEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY--ERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      .+.-.+++++.+|+|++||+|.-.| +|||++...+...  +.|...+.+++..+.. ..-++++++     .|+-|+++
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASas-----rdRlIHV~  531 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASAS-----RDRLIHVY  531 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhcc-----CCceEEEE
Confidence            3445799999999999999998777 7999998876543  3444555555554432 111233332     58999999


Q ss_pred             ECCCCc-EEEEEec-CCceEEEEEcCCe----EEEEE-CCeEEEEECCC-CceeeEEeCCC---CCceEEEEeeCCCccE
Q 019349           81 NTTTGT-ALRELNF-LTSILAVRLNKKR----LVIVL-REKTYIYDANT-LAILDTIDTVP---NLKGLCAFSPSLNACF  149 (342)
Q Consensus        81 d~~~~~-~~~~~~~-~~~v~~i~~~~~~----~~~~~-d~~i~i~d~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~  149 (342)
                      |+...- .+.++.. .+.|+++.|-...    ++.++ |..|. |+... ......+..+.   ....+..+..+|...+
T Consensus       532 Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~  610 (1080)
T KOG1408|consen  532 DVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKL  610 (1080)
T ss_pred             ecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhh-eehhccccCceeccccccccccceEEEeeeCCCcce
Confidence            987653 4455654 5589999985432    33333 44444 44322 11111222222   1245778888888889


Q ss_pred             EEEeCCCCccEEEEEEccCCceeEEEec---ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCcee
Q 019349          150 LAVPASTTKGSVLVYNVMELHSHCEIDA---HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST  226 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~---h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~  226 (342)
                      +++++  +|..|+|||+.+++.++.|++   |++....+...|.|.||||.+.|.++ .++|..+|+++.++..+  ...
T Consensus       611 v~t~c--QDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl-~~~Df~sgEcvA~m~GH--sE~  685 (1080)
T KOG1408|consen  611 VVTVC--QDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTL-CFVDFVSGECVAQMTGH--SEA  685 (1080)
T ss_pred             EEEEe--cccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCce-EEEEeccchhhhhhcCc--chh
Confidence            99888  799999999999999999975   77788889999999999999999885 79999999999888543  445


Q ss_pred             EEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      |+.|.|.+|-+   .|++.+.||.|.||.+..
T Consensus       686 VTG~kF~nDCk---HlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  686 VTGVKFLNDCK---HLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eeeeeecccch---hheeecCCceEEEEECch
Confidence            99999999999   999999999999999754

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=4.6e-17  Score=135.55  Aligned_cols=241  Identities=20%  Similarity=0.266  Sum_probs=164.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc----EE--EEEeeCCEEEEEEcCCC--CeEEEEcCCCCCCCCCC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR----LC--YERAVGAFSIVEMLYSS--SLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~----~~--~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~d~   75 (342)
                      .+..-|.++.|++-|+.+|+++.|+ ++|||.....    ..  ...+.+.+-.+.+++..  +.+|.++       .|+
T Consensus        11 ~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS-------~Dr   83 (361)
T KOG2445|consen   11 GHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCS-------YDR   83 (361)
T ss_pred             CCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEe-------cCC
Confidence            4556699999999999999998776 7999964432    21  23355677777777764  5666666       499


Q ss_pred             eEEEEECCCC-------cEEE--EE-ecCCceEEEEEcCCe--EEEEE---CCeEEEEECCCCc------eeeEEe----
Q 019349           76 RLCLFNTTTG-------TALR--EL-NFLTSILAVRLNKKR--LVIVL---REKTYIYDANTLA------ILDTID----  130 (342)
Q Consensus        76 ~i~iwd~~~~-------~~~~--~~-~~~~~v~~i~~~~~~--~~~~~---d~~i~i~d~~~~~------~~~~~~----  130 (342)
                      ++.||.-...       +.+.  ++ .-.+.|++|+|.|.+  +.++.   ||.++||+.-+.-      ++++++    
T Consensus        84 tv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~  163 (361)
T KOG2445|consen   84 TVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVID  163 (361)
T ss_pred             ceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccC
Confidence            9999985211       1122  11 235689999998864  33333   9999999886542      333332    


Q ss_pred             CC-CCCceEEEEeeCCC---ccEEEEeCCC---CccEEEEEEccCCc----eeEEEecccCCeeEEEECCCC----CEEE
Q 019349          131 TV-PNLKGLCAFSPSLN---ACFLAVPAST---TKGSVLVYNVMELH----SHCEIDAHQAPLAAIVLSSNG----MYIA  195 (342)
Q Consensus       131 ~~-~~~~~~~~~~~~~~---~~~l~~~~~~---~~g~i~iwd~~~~~----~~~~~~~h~~~v~~i~~s~dg----~~la  195 (342)
                      .+ .+.....|+++++.   ..+||.+...   .-+.+.||......    .+..+..|..+|+.|+|.|+-    .+||
T Consensus       164 pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  164 PPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             CcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEE
Confidence            11 12233456666653   3466666421   12478999764432    456678999999999999963    5799


Q ss_pred             EEeCCCcEEEEEEcCCC--------------------eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          196 TASEQGTIIRVFLVSEA--------------------TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       196 t~s~dg~~irlwd~~~~--------------------~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      +|+.||  ||||.+...                    +++.++.  .|.++|..+.|+-.|.   .|++++.||.|++|.
T Consensus       244 vA~kDg--v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~--~H~~~VWrv~wNmtGt---iLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  244 VATKDG--VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELD--DHNGEVWRVRWNMTGT---ILSSTGDDGCVRLWK  316 (361)
T ss_pred             EeecCc--EEEEEEeeccchhhhhcccCCCCccccceEEeeecc--CCCCceEEEEEeeeee---EEeecCCCceeeehh
Confidence            999999  599998731                    1233332  3467899999999999   999999999999997


Q ss_pred             cCCC
Q 019349          256 PGFA  259 (342)
Q Consensus       256 ~~~~  259 (342)
                      ....
T Consensus       317 any~  320 (361)
T KOG2445|consen  317 ANYN  320 (361)
T ss_pred             hhhh
Confidence            6543

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.81  E-value=3e-17  Score=144.75  Aligned_cols=300  Identities=12%  Similarity=0.130  Sum_probs=199.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc---------EEEEeCCCCcEEEEEe--eCCEEEEEEcCC--CCeEEEEcCCCCCC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG---------FKIFDSSTGRLCYERA--VGAFSIVEMLYS--SSLLAIVGAGEQPS   71 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g---------~~v~d~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~~~~g~~~~   71 (342)
                      .|...|.|++.+||--.+++|-..+         +|+||..+-.-++...  ..++.++++...  ++.++.+..+    
T Consensus       102 GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s----  177 (626)
T KOG2106|consen  102 GHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDS----  177 (626)
T ss_pred             CCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeeeeeccccccceeeeecccCCCceEEEecCC----
Confidence            5778899999999988888663322         6999976654443332  356666666543  3566666553    


Q ss_pred             CCCCeEEEEECCCCcEEEEEecC-CceEEEEEcCC---eEEEEECCeEEEEECCCCceeeEE---eCCCCCceEEEEeeC
Q 019349           72 LSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKK---RLVIVLREKTYIYDANTLAILDTI---DTVPNLKGLCAFSPS  144 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~~~~~-~~v~~i~~~~~---~~~~~~d~~i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~  144 (342)
                       .+..+-+||...+......... ..|....|+|.   .++....+.+++|+.+.+.+.+..   +.+.. ..+.++++.
T Consensus       178 -~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ek-k~Vl~v~F~  255 (626)
T KOG2106|consen  178 -NPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREK-KFVLCVTFL  255 (626)
T ss_pred             -CccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccc-eEEEEEEEc
Confidence             5778999999988877766644 46677888774   333444779999999988666543   33333 677888888


Q ss_pred             CCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec-----
Q 019349          145 LNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR-----  219 (342)
Q Consensus       145 ~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~-----  219 (342)
                      +++..+ ++.  .+|.|.||+..+.+..+...+|.+.|.+++.-.+|.+| +|+.|..++ .||- .-+++.+..     
T Consensus       256 engdvi-TgD--S~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~-~Wd~-~y~k~r~~elPe~~  329 (626)
T KOG2106|consen  256 ENGDVI-TGD--SGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKII-LWDD-NYRKLRETELPEQF  329 (626)
T ss_pred             CCCCEE-eec--CCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEE-eccc-cccccccccCchhc
Confidence            887655 455  58999999998888777777999999999999998755 599998765 9983 222211110     


Q ss_pred             ----------------------------cC------cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC--C
Q 019349          220 ----------------------------RG------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ--R  263 (342)
Q Consensus       220 ----------------------------~~------~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~--~  263 (342)
                                                  .+      .+..+...++.+|+..   .|++++.|+.+++|+ + .+.+  +
T Consensus       330 G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~---q~~T~gqdk~v~lW~-~-~k~~wt~  404 (626)
T KOG2106|consen  330 GPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN---QLLTCGQDKHVRLWN-D-HKLEWTK  404 (626)
T ss_pred             CCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh---heeeccCcceEEEcc-C-CceeEEE
Confidence                                        00      1122467899999988   999999999999999 2 1111  0


Q ss_pred             CCCCccccccccccccc------cccccc---cc--------cceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          264 RGGRTSSILGSILPESV------NEVLDP---AD--------HHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       264 ~~~~~~~~~~~~~~~~~------~~~~~~---~~--------~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      ....+.. -..+.|..+      ...|-.   ..        .......+.+.|++..|++++.|+.||+|.++..
T Consensus       405 ~~~d~~~-~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~  479 (626)
T KOG2106|consen  405 IIEDPAE-CADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSAN  479 (626)
T ss_pred             EecCcee-EeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCC
Confidence            0011111 011111111      111111   11        0112345677888999999999999999998753

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.81  E-value=3.6e-19  Score=156.69  Aligned_cols=215  Identities=13%  Similarity=0.124  Sum_probs=156.6

Q ss_pred             CCeEEEEECCCC---cEEEEEec---CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349           74 PRRLCLFNTTTG---TALRELNF---LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS  144 (342)
Q Consensus        74 d~~i~iwd~~~~---~~~~~~~~---~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  144 (342)
                      .+-|+|||+...   .++..+..   ...|+++.+.++...+..   -.++.|||+......-..+.........+++.+
T Consensus       439 kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~s  518 (705)
T KOG0639|consen  439 KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAIS  518 (705)
T ss_pred             CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcC
Confidence            679999998643   23444332   457889998887644433   348999999876443333333333456678888


Q ss_pred             CCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc
Q 019349          145 LNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP  224 (342)
Q Consensus       145 ~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~  224 (342)
                      ||....+++.  .||.|.|||+.+...++.|++|.+.+.||.+++||..|-||+-|.+ +|-||++++..+.+.   ...
T Consensus       519 pDakvcFscc--sdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt-vRcWDlregrqlqqh---dF~  592 (705)
T KOG0639|consen  519 PDAKVCFSCC--SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT-VRCWDLREGRQLQQH---DFS  592 (705)
T ss_pred             Cccceeeeec--cCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc-eeehhhhhhhhhhhh---hhh
Confidence            8887776666  5899999999999999999999999999999999999999999998 599999999876543   334


Q ss_pred             eeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccE
Q 019349          225 STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRAS  304 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (342)
                      ..|.+|..+|.+.   +||+|-+++.+.|-....+.+-.-            ..+..|+-+          +.|..-+..
T Consensus       593 SQIfSLg~cP~~d---WlavGMens~vevlh~skp~kyql------------hlheScVLS----------lKFa~cGkw  647 (705)
T KOG0639|consen  593 SQIFSLGYCPTGD---WLAVGMENSNVEVLHTSKPEKYQL------------HLHESCVLS----------LKFAYCGKW  647 (705)
T ss_pred             hhheecccCCCcc---ceeeecccCcEEEEecCCccceee------------cccccEEEE----------EEecccCce
Confidence            5699999999998   999999999998887665543211            011112222          222333467


Q ss_pred             EEEEEeCCcEEEEEE
Q 019349          305 VSVITYNGYFVEYIF  319 (342)
Q Consensus       305 l~~~~~dg~v~~~~~  319 (342)
                      .++.+.|..+..|..
T Consensus       648 fvStGkDnlLnawrt  662 (705)
T KOG0639|consen  648 FVSTGKDNLLNAWRT  662 (705)
T ss_pred             eeecCchhhhhhccC
Confidence            777888888887764

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=1.9e-18  Score=139.53  Aligned_cols=240  Identities=11%  Similarity=0.122  Sum_probs=168.2

Q ss_pred             EEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc---EEEEEe-cCCceEEEEEcC-C-e--EEEEE-CCeEEEEECCC
Q 019349           52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT---ALRELN-FLTSILAVRLNK-K-R--LVIVL-REKTYIYDANT  122 (342)
Q Consensus        52 ~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~---~~~~~~-~~~~v~~i~~~~-~-~--~~~~~-d~~i~i~d~~~  122 (342)
                      +.+.+-+..+++++.       |++|+|+..+.+.   .+.++. +.++|..+.|.. . +  ++.++ |++|.||.-.+
T Consensus        17 a~lDyygkrlATcsS-------D~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~   89 (299)
T KOG1332|consen   17 AQLDYYGKRLATCSS-------DGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEEN   89 (299)
T ss_pred             hhhhhhcceeeeecC-------CccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCC
Confidence            445566788888875       9999999997654   345554 456999999843 2 3  33344 99999999988


Q ss_pred             Ccee--eEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC-c--eeEEEecccCCeeEEEECCC---C---
Q 019349          123 LAIL--DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-H--SHCEIDAHQAPLAAIVLSSN---G---  191 (342)
Q Consensus       123 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-~--~~~~~~~h~~~v~~i~~s~d---g---  191 (342)
                      ++-.  .....|......++++|+.-+..||+++  .||.|.|.+.++. .  ......+|.-.|+++++.|-   |   
T Consensus        90 g~w~k~~e~~~h~~SVNsV~wapheygl~Lacas--SDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   90 GRWTKAYEHAAHSASVNSVAWAPHEYGLLLACAS--SDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CchhhhhhhhhhcccceeecccccccceEEEEee--CCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            7432  3334445555667777877788888887  5899999988654 2  23345689999999999986   5   


Q ss_pred             --------CEEEEEeCCCcEEEEEEcCCCeeEE--EeccCcCceeEEEEEEecCC-CcccEEEEEeCCCcEEEEecCCCC
Q 019349          192 --------MYIATASEQGTIIRVFLVSEATKSY--SFRRGTYPSTIFSLSFGQSM-QFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       192 --------~~lat~s~dg~~irlwd~~~~~~~~--~~~~~~~~~~v~~l~fs~d~-~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                              +.|++|+.|.. ++||+..+++-+.  .++  .|..-|+.+||.|.- -.+.+||++|.||+|-||-.+...
T Consensus       168 ~~~~~~~~krlvSgGcDn~-VkiW~~~~~~w~~e~~l~--~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~  244 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNL-VKIWKFDSDSWKLERTLE--GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEY  244 (299)
T ss_pred             ccCcccccceeeccCCccc-eeeeecCCcchhhhhhhh--hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCcc
Confidence                    67999999986 6999998874222  232  234569999999974 112389999999999999877332


Q ss_pred             CCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          261 NQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      ++-    ....+..+........|++.+              +.|++.+.|..|.+|.-+.
T Consensus       245 e~w----k~tll~~f~~~~w~vSWS~sG--------------n~LaVs~GdNkvtlwke~~  287 (299)
T KOG1332|consen  245 EPW----KKTLLEEFPDVVWRVSWSLSG--------------NILAVSGGDNKVTLWKENV  287 (299)
T ss_pred             Ccc----cccccccCCcceEEEEEeccc--------------cEEEEecCCcEEEEEEeCC
Confidence            211    111122222233445666665              8899999999999996543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.80  E-value=1.2e-17  Score=145.68  Aligned_cols=257  Identities=13%  Similarity=0.085  Sum_probs=167.9

Q ss_pred             eeCCEEEEEEcCCCC-eEEEEcCCCCCCCCCCeEEEEECCCCcEE----EEE-ecCCceEEEEEcCC---eEEEEE-CCe
Q 019349           45 AVGAFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLCLFNTTTGTAL----REL-NFLTSILAVRLNKK---RLVIVL-REK  114 (342)
Q Consensus        45 ~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~i~iwd~~~~~~~----~~~-~~~~~v~~i~~~~~---~~~~~~-d~~  114 (342)
                      ..+.+..+.+.+..+ .++.+|.      ..++|-+||+.+.+..    .-+ .+..+|.++.|+|.   .++.++ ||+
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~Gd------K~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt  258 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGD------KGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT  258 (498)
T ss_pred             cccceEEEEecccCcceEEEEcc------CCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence            457788888888877 4555554      5799999999633321    112 23458999999874   445554 999


Q ss_pred             EEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce-eEEEecccCCeeEEEECCC-CC
Q 019349          115 TYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-HCEIDAHQAPLAAIVLSSN-GM  192 (342)
Q Consensus       115 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~-~~~~~~h~~~v~~i~~s~d-g~  192 (342)
                      |++-|++....-..+........++.+.++.+...+.+++  .=|...+||+++... ...+.-|+..|++|+++|- -.
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~--~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~  336 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGD--NVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPW  336 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEee--cccceEEEEeecCCccchhhhhhhcccceeecCCCCch
Confidence            9999998764322222222334455555555555555555  357899999998765 5667789999999999994 56


Q ss_pred             EEEEEeCCCcEEEEEEcCCCeeEEE--eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC---CCCCCCCCCC
Q 019349          193 YIATASEQGTIIRVFLVSEATKSYS--FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG---FAINQRRGGR  267 (342)
Q Consensus       193 ~lat~s~dg~~irlwd~~~~~~~~~--~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~---~~~~~~~~~~  267 (342)
                      +|||||.|++. +|||++.-....+  +..-.|...|.+..|||++.   .|++.+.|++|+|||..   ...++...-+
T Consensus       337 ~laT~s~D~T~-kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g---tl~TT~~D~~IRv~dss~~sa~~~p~~~I~  412 (498)
T KOG4328|consen  337 FLATASLDQTA-KIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG---TLLTTCQDNEIRVFDSSCISAKDEPLGTIP  412 (498)
T ss_pred             heeecccCcce-eeeehhhhcCCCCcceecccccceeeeeEEcCCCC---ceEeeccCCceEEeecccccccCCccceee
Confidence            79999999985 8999986433221  22223455699999999998   79999999999999984   2222221111


Q ss_pred             ccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCCeeeeEE
Q 019349          268 TSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTL  331 (342)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~~  331 (342)
                      +....+-++ ..+-.+|+|..              +.|+++-.-..|-+|+   .++++-+|.+
T Consensus       413 Hn~~t~Rwl-T~fKA~W~P~~--------------~li~vg~~~r~IDv~~---~~~~q~v~el  458 (498)
T KOG4328|consen  413 HNNRTGRWL-TPFKAAWDPDY--------------NLIVVGRYPRPIDVFD---GNGGQMVCEL  458 (498)
T ss_pred             ccCcccccc-cchhheeCCCc--------------cEEEEeccCcceeEEc---CCCCEEeeec
Confidence            111111122 23456888855              6677776666666663   3445444543

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.80  E-value=2.2e-16  Score=146.77  Aligned_cols=274  Identities=15%  Similarity=0.145  Sum_probs=189.2

Q ss_pred             EEEcCCCC--EEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349           13 VSFNQDNS--GFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (342)
Q Consensus        13 l~fs~d~~--~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~   90 (342)
                      .+|..-++  ++.++-++.+.+||.+...+++.....+-.+.++.....++..+.+        +.|.+|-  .|+.+..
T Consensus        39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~vs~~lp~~I~alas~~~~vy~A~g--------~~i~~~~--rgk~i~~  108 (910)
T KOG1539|consen   39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFVSKPLPDKITALASDKDYVYVASG--------NKIYAYA--RGKHIRH  108 (910)
T ss_pred             eeeeecCceEEEEEecCceEEEEeccceEEEEecCCCCCceEEEEecCceEEEecC--------cEEEEEE--ccceEEE
Confidence            44444444  3455667778999999988887765545555566555566555543        5676664  4544433


Q ss_pred             -Eec-CCceEEEEEcCCeEEEEE-CCeEEEEECCCCc-ee---eEEeCCCCCceEEEEee-CCCccEEEEeCCCCccEEE
Q 019349           91 -LNF-LTSILAVRLNKKRLVIVL-REKTYIYDANTLA-IL---DTIDTVPNLKGLCAFSP-SLNACFLAVPASTTKGSVL  162 (342)
Q Consensus        91 -~~~-~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~-~~---~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~g~i~  162 (342)
                       +.. ...|.-+..-++.++.+. ++.++||+..+++ .+   -.+....+ ..+.++.. +.--+.++.+.  .+|.++
T Consensus       109 ~~~~~~a~v~~l~~fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~-~~Ital~HP~TYLNKIvvGs--~~G~lq  185 (910)
T KOG1539|consen  109 TTLLHGAKVHLLLPFGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEG-DFITALLHPSTYLNKIVVGS--SQGRLQ  185 (910)
T ss_pred             EeccccceEEEEeeecceEEEEEccCcEEEEEeccccccccccceeeeccC-CceeeEecchhheeeEEEee--cCCcEE
Confidence             322 236777777777766666 8899999998741 11   11111112 22555443 22222344544  589999


Q ss_pred             EEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEE
Q 019349          163 VYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL  242 (342)
Q Consensus       163 iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l  242 (342)
                      +|++++++.+.+++++.+.|+++.=+|--..+|.|..+|++| +++++.++.+.+|+.  ..+.|++++|..||.  +.|
T Consensus       186 l~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~Vi-ifNlK~dkil~sFk~--d~g~VtslSFrtDG~--p~l  260 (910)
T KOG1539|consen  186 LWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVI-IFNLKFDKILMSFKQ--DWGRVTSLSFRTDGN--PLL  260 (910)
T ss_pred             EEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEE-EEEcccCcEEEEEEc--cccceeEEEeccCCC--eeE
Confidence            999999999999999999999999999889999999999975 999999999999963  247799999999998  588


Q ss_pred             EEEeCCCcEEEEecCCCCCCCCCC-CccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          243 VATSSSGSLHVFSPGFAINQRRGG-RTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       243 ~~~s~dg~i~vwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      |+|+..|.+-+||++..+...... .+   .++        +          ....|.+..+.+++.+.|..+++|-+|.
T Consensus       261 as~~~~G~m~~wDLe~kkl~~v~~nah---~~s--------v----------~~~~fl~~epVl~ta~~DnSlk~~vfD~  319 (910)
T KOG1539|consen  261 ASGRSNGDMAFWDLEKKKLINVTRNAH---YGS--------V----------TGATFLPGEPVLVTAGADNSLKVWVFDS  319 (910)
T ss_pred             EeccCCceEEEEEcCCCeeeeeeeccc---cCC--------c----------ccceecCCCceEeeccCCCceeEEEeeC
Confidence            888889999999998765432110 00   000        0          0111233346899999999999999996


Q ss_pred             CCCC
Q 019349          322 NNCC  325 (342)
Q Consensus       322 ~~~~  325 (342)
                      ..+.
T Consensus       320 ~dg~  323 (910)
T KOG1539|consen  320 GDGV  323 (910)
T ss_pred             CCCc
Confidence            5553

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.79  E-value=2.8e-18  Score=146.21  Aligned_cols=188  Identities=11%  Similarity=0.094  Sum_probs=131.0

Q ss_pred             CCeEEEEECCC----------------CceeeEEeCCCCCceEEEEeeCCCcc-EEEEeCCCCccEEEEEEccCCce---
Q 019349          112 REKTYIYDANT----------------LAILDTIDTVPNLKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHS---  171 (342)
Q Consensus       112 d~~i~i~d~~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~~---  171 (342)
                      .|.|+||++..                .+.+.++..|..  .-++++++|-.. .|+++.  -.+.|++|...++.=   
T Consensus       174 ~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~--EGy~LdWSp~~~g~LlsGD--c~~~I~lw~~~~g~W~vd  249 (440)
T KOG0302|consen  174 NGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG--EGYGLDWSPIKTGRLLSGD--CVKGIHLWEPSTGSWKVD  249 (440)
T ss_pred             cCcEEEEEchhhhhhhcCccccccccccCceEEecccCc--cceeeecccccccccccCc--cccceEeeeeccCceeec
Confidence            67999999953                123444444433  234555555211 345544  357799999888652   


Q ss_pred             eEEEecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc
Q 019349          172 HCEIDAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS  250 (342)
Q Consensus       172 ~~~~~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~  250 (342)
                      ...+.+|+..|..++|||. ...|||||.||+ |||||++.+.+...+....+.+.|+-|+|+.+..   +||+|++||+
T Consensus       250 ~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs-IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~---lLasG~DdGt  325 (440)
T KOG0302|consen  250 QRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS-IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREP---LLASGGDDGT  325 (440)
T ss_pred             CccccccccchhhhccCCccCceEEeeecCce-EEEEEecCCCccceeEeeccCCceeeEEccCCcc---eeeecCCCce
Confidence            2456689999999999994 578999999998 6999999985443333345566799999999988   9999999999


Q ss_pred             EEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCC
Q 019349          251 LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNC  324 (342)
Q Consensus       251 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~  324 (342)
                      ++|||++..+....    -..+..+..+.....|+|..             ...|++++.|.++.+|++..+..
T Consensus       326 ~~iwDLR~~~~~~p----VA~fk~Hk~pItsieW~p~e-------------~s~iaasg~D~QitiWDlsvE~D  382 (440)
T KOG0302|consen  326 LSIWDLRQFKSGQP----VATFKYHKAPITSIEWHPHE-------------DSVIAASGEDNQITIWDLSVEAD  382 (440)
T ss_pred             EEEEEhhhccCCCc----ceeEEeccCCeeEEEecccc-------------CceEEeccCCCcEEEEEeeccCC
Confidence            99999987654211    01111122233345677754             25789999999999999986654

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1.1e-18  Score=167.08  Aligned_cols=245  Identities=10%  Similarity=0.117  Sum_probs=182.8

Q ss_pred             CCCCCeEEEEEcCCCCE----EEEEcCCc-EEEEeCCCC------cE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCC
Q 019349            5 SSSYPVFFVSFNQDNSG----FALSTKDG-FKIFDSSTG------RL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPS   71 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~----la~g~~~g-~~v~d~~~~------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   71 (342)
                      +....-+.|+|.+.|..    ||.|.+|| +.+||....      .+  .+..|.+.+..+++......++ ++|+    
T Consensus        62 ~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlL-ASGa----  136 (1049)
T KOG0307|consen   62 QSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLL-ASGA----  136 (1049)
T ss_pred             cccccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCcee-eccC----
Confidence            44567889999998776    78888888 799997652      11  1344567777777665544333 3332    


Q ss_pred             CCCCeEEEEECCCCcEEEEE---ecCCceEEEEEcCCe--EEE-EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349           72 LSPRRLCLFNTTTGTALREL---NFLTSILAVRLNKKR--LVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS  144 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~~---~~~~~v~~i~~~~~~--~~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  144 (342)
                       +++.|.|||+.+-+.-...   ...+.|.+++|++..  ++. ++ ++++-|||++..+.+-.+..+.....+..+.++
T Consensus       137 -~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~Wh  215 (1049)
T KOG0307|consen  137 -DDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWH  215 (1049)
T ss_pred             -CCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeC
Confidence             5899999999875433332   346689999998863  222 22 679999999988777676655554445677788


Q ss_pred             CCcc--EEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349          145 LNAC--FLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSFRR  220 (342)
Q Consensus       145 ~~~~--~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~irlwd~~~~~~~~~~~~  220 (342)
                      |+..  .+++.+.+..-.|.+||++.. .+++.+++|...|.+|.|++.+ ++|+|++.|+++| +|+.++|+.+.++..
T Consensus       216 P~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii-~wN~~tgEvl~~~p~  294 (1049)
T KOG0307|consen  216 PDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRII-CWNPNTGEVLGELPA  294 (1049)
T ss_pred             CCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCee-EecCCCceEeeecCC
Confidence            7653  344444445578999999865 4677889999999999999966 8999999999976 999999999999965


Q ss_pred             CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          221 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      .  ..-+..+.|+|...  +.+++++-||.|.||.+....
T Consensus       295 ~--~nW~fdv~w~pr~P--~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  295 Q--GNWCFDVQWCPRNP--SVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             C--CcceeeeeecCCCc--chhhhheeccceeeeeeecCC
Confidence            3  34588999999887  489999999999999997655

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.79  E-value=2.7e-17  Score=148.68  Aligned_cols=280  Identities=13%  Similarity=0.115  Sum_probs=179.4

Q ss_pred             EEEEEcCCC---CEEEEEcCCc-EEEEeCCCCcEE--------EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349           11 FFVSFNQDN---SGFALSTKDG-FKIFDSSTGRLC--------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus        11 ~~l~fs~d~---~~la~g~~~g-~~v~d~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      .+..|++--   ..||++.++| +.+||.......        ...|...+--+.+.+....++.++|       |.+++
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasG-------DsT~r  125 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASG-------DSTIR  125 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccC-------Cceee
Confidence            667887633   3588999988 699997655322        1123344555566664445555555       89999


Q ss_pred             EEECCCCcEEEE---EecCCceEEEEEcCCeEEE---EE-CCeEEEEECCCCc--eeeE--------EeC---CCC----
Q 019349           79 LFNTTTGTALRE---LNFLTSILAVRLNKKRLVI---VL-REKTYIYDANTLA--ILDT--------IDT---VPN----  134 (342)
Q Consensus        79 iwd~~~~~~~~~---~~~~~~v~~i~~~~~~~~~---~~-d~~i~i~d~~~~~--~~~~--------~~~---~~~----  134 (342)
                      +||+++++++..   +.+...|.+++|.+....+   .+ |+.|.|||++-..  .+..        ..+   +..    
T Consensus       126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k  205 (720)
T KOG0321|consen  126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK  205 (720)
T ss_pred             eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence            999999988865   4566789999997754322   22 8999999995321  0000        011   100    


Q ss_pred             --------CceEEE---EeeCCCccEEEEeCCCCccEEEEEEccCCceeE--------EEecc---cCCeeEEEECCCCC
Q 019349          135 --------LKGLCA---FSPSLNACFLAVPASTTKGSVLVYNVMELHSHC--------EIDAH---QAPLAAIVLSSNGM  192 (342)
Q Consensus       135 --------~~~~~~---~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~--------~~~~h---~~~v~~i~~s~dg~  192 (342)
                              ...+..   +-...|...||++|. .|+.|+|||++......        .+.-|   .-.+.++.....|.
T Consensus       206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga-~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt  284 (720)
T KOG0321|consen  206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGA-ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGT  284 (720)
T ss_pred             cccccccccCceeeeeEEEEEeccceeeeccC-CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCC
Confidence                    011111   223346678999986 69999999998765322        12223   33688888888899


Q ss_pred             EEEEEeCCCcEEEEEEcCCCe--eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccc
Q 019349          193 YIATASEQGTIIRVFLVSEAT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSS  270 (342)
Q Consensus       193 ~lat~s~dg~~irlwd~~~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~  270 (342)
                      +|...+.|+++ ..|++.+-.  .+..+.......--..-..+||+.   +|++|+.|...++|.+.....+.      .
T Consensus       285 ~L~AsCtD~sI-y~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~---~l~SgSsd~~ayiw~vs~~e~~~------~  354 (720)
T KOG0321|consen  285 YLFASCTDNSI-YFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDC---SLLSGSSDEQAYIWVVSSPEAPP------A  354 (720)
T ss_pred             eEEEEecCCcE-EEEeccccCcCchhhccCcccceeeeeeecCCCCc---eEeccCCCcceeeeeecCccCCh------h
Confidence            98888889985 599997643  223332111111111224689999   99999999999999998876543      1


Q ss_pred             cccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          271 ILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      .+.++.-+.+...|.|...             ..+++++.|-.+++|++..
T Consensus       355 ~l~Ght~eVt~V~w~pS~~-------------t~v~TcSdD~~~kiW~l~~  392 (720)
T KOG0321|consen  355 LLLGHTREVTTVRWLPSAT-------------TPVATCSDDFRVKIWRLSN  392 (720)
T ss_pred             hhhCcceEEEEEeeccccC-------------CCceeeccCcceEEEeccC
Confidence            1223333344556777542             4588889999999999843

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.79  E-value=1.2e-17  Score=139.65  Aligned_cols=179  Identities=13%  Similarity=0.145  Sum_probs=134.7

Q ss_pred             CCCeEEEEECCCCcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEEC----CCCcee--------eEEeC---C-
Q 019349           73 SPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDA----NTLAIL--------DTIDT---V-  132 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~----~~~~~~--------~~~~~---~-  132 (342)
                      .|.+.+||.+++|.|+.++.. .+.|.+|+|++.++++..   |++..||..    +.++..        .+.+.   + 
T Consensus       168 ADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~  247 (481)
T KOG0300|consen  168 ADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHN  247 (481)
T ss_pred             cccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccc
Confidence            599999999999999999874 569999999998777655   789999972    111100        00000   0 


Q ss_pred             ----------------------CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCC
Q 019349          133 ----------------------PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSN  190 (342)
Q Consensus       133 ----------------------~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~d  190 (342)
                                            .+...+.+..+-..+..+++++  .|.+..+||+++++++..+.+|....+.++-+|.
T Consensus       248 ~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaS--WDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt  325 (481)
T KOG0300|consen  248 RDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTAS--WDRTANLWDVETGEVVNILTGHDSELTHCSTHPT  325 (481)
T ss_pred             cccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeee--ccccceeeeeccCceeccccCcchhccccccCCc
Confidence                                  0001122222323455666666  7899999999999999999999999999999999


Q ss_pred             CCEEEEEeCCCcEEEEEEcCCC-eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          191 GMYIATASEQGTIIRVFLVSEA-TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       191 g~~lat~s~dg~~irlwd~~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      -++++|+|.|.+ .|+||.+.. .-+..|+.  +...|+++.|.-|.+    +++||+|.+|+|||++...
T Consensus       326 QrLVvTsSrDtT-FRLWDFReaI~sV~VFQG--HtdtVTS~vF~~dd~----vVSgSDDrTvKvWdLrNMR  389 (481)
T KOG0300|consen  326 QRLVVTSSRDTT-FRLWDFREAIQSVAVFQG--HTDTVTSVVFNTDDR----VVSGSDDRTVKVWDLRNMR  389 (481)
T ss_pred             ceEEEEeccCce-eEeccchhhcceeeeecc--cccceeEEEEecCCc----eeecCCCceEEEeeecccc
Confidence            999999999976 699999853 33455653  355699999999886    9999999999999998654

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.78  E-value=1.5e-17  Score=146.30  Aligned_cols=240  Identities=17%  Similarity=0.211  Sum_probs=163.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc---EEEEeCC--CCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG---FKIFDSS--TGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g---~~v~d~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      ++..+.++.|+.... |++++..|   +++|.-+  ++++......  ....++.+..-+  +..+++|     ..+.|+
T Consensus        33 ~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S--~y~~sgG-----~~~~Vk  104 (673)
T KOG4378|consen   33 AEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQS--LYEISGG-----QSGCVK  104 (673)
T ss_pred             CCCcceeeeccccce-EEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcc--eeeeccC-----cCceee
Confidence            445599999998776 55444333   4788532  2222222111  111222222222  3445554     578999


Q ss_pred             EEECCCCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           79 LFNTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        79 iwd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      |||++...+...+. +.+.|+++..+...  ++.+. .|.|.|..+.++..-..+....+ ..+--+.+++..+++....
T Consensus       105 iwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sg-qsvRll~ys~skr~lL~~a  183 (673)
T KOG4378|consen  105 IWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSG-QSVRLLRYSPSKRFLLSIA  183 (673)
T ss_pred             ehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCC-CeEEEeecccccceeeEee
Confidence            99999766666654 45689999886544  43344 56999999998876666654323 2333344444444444333


Q ss_pred             CCCccEEEEEEccCCceeEEE-ecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349          155 STTKGSVLVYNVMELHSHCEI-DAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  232 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~-~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f  232 (342)
                      + .+|.|.+||+....++..+ +.|..|...|+|+|. ..+|++-+-|.++ .+||+...+....+.   ...+..+++|
T Consensus       184 s-d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki-~~yD~~s~~s~~~l~---y~~Plstvaf  258 (673)
T KOG4378|consen  184 S-DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKI-NIYDIRSQASTDRLT---YSHPLSTVAF  258 (673)
T ss_pred             c-cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceE-EEeecccccccceee---ecCCcceeee
Confidence            3 6999999999888777664 579999999999994 5678899999885 599998776666553   2456899999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349          233 GQSMQFQDILVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       233 s~d~~~~~~l~~~s~dg~i~vwd~~~~~~~  262 (342)
                      +++|.   +|++|+..|.|..||++..+.+
T Consensus       259 ~~~G~---~L~aG~s~G~~i~YD~R~~k~P  285 (673)
T KOG4378|consen  259 SECGT---YLCAGNSKGELIAYDMRSTKAP  285 (673)
T ss_pred             cCCce---EEEeecCCceEEEEecccCCCC
Confidence            99999   9999999999999999876543

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=7.4e-19  Score=160.72  Aligned_cols=226  Identities=13%  Similarity=0.132  Sum_probs=178.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      |...|.|+..-..++.+++|+++-. .+|.+....-  -+..|..+|..+.+.++...++..+       .+++|++||+
T Consensus        27 hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~Llaags-------asgtiK~wDl   99 (825)
T KOG0267|consen   27 HSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGS-------ASGTIKVWDL   99 (825)
T ss_pred             hhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccc-------cCCceeeeeh
Confidence            3456777777667788889988774 6898755422  2455667787777766555544333       5899999999


Q ss_pred             CCCcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349           83 TTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (342)
Q Consensus        83 ~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  158 (342)
                      +.++.++++.. ..++..+.|+|-.-+.++   |..+++||.+...+.+.+..+  ...+-++.+.|++.+++.++  .|
T Consensus       100 eeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~--~~vv~~l~lsP~Gr~v~~g~--ed  175 (825)
T KOG0267|consen  100 EEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSH--TRVVDVLRLSPDGRWVASGG--ED  175 (825)
T ss_pred             hhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCC--cceeEEEeecCCCceeeccC--Cc
Confidence            99998887764 458999999998766644   889999999988888888764  34555666778899999888  58


Q ss_pred             cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCc
Q 019349          159 GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  238 (342)
Q Consensus       159 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (342)
                      .+++|||+..++....|+.|+..+.++.|+|..-+|++||.|++ +++||+++-+.+.....  ....|.+++|+|+++ 
T Consensus       176 ~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t-v~f~dletfe~I~s~~~--~~~~v~~~~fn~~~~-  251 (825)
T KOG0267|consen  176 NTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT-VRFWDLETFEVISSGKP--ETDGVRSLAFNPDGK-  251 (825)
T ss_pred             ceeeeecccccccccccccccccccccccCchhhhhccCCCCce-eeeeccceeEEeeccCC--ccCCceeeeecCCce-
Confidence            99999999999999999999999999999999999999999987 59999998877766532  245699999999998 


Q ss_pred             ccEEEEEeCC
Q 019349          239 QDILVATSSS  248 (342)
Q Consensus       239 ~~~l~~~s~d  248 (342)
                        .+++|...
T Consensus       252 --~~~~G~q~  259 (825)
T KOG0267|consen  252 --IVLSGEQI  259 (825)
T ss_pred             --eeecCchh
Confidence              67666554

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.78  E-value=8.7e-17  Score=135.02  Aligned_cols=286  Identities=14%  Similarity=0.140  Sum_probs=190.7

Q ss_pred             CCCCCCCeEEEEEcC-----CCCEEEEEcCCcEEEEeCCCC---cEEEEE----eeCCEEEEEEcCCC---CeEEEEcCC
Q 019349            3 NQSSSYPVFFVSFNQ-----DNSGFALSTKDGFKIFDSSTG---RLCYER----AVGAFSIVEMLYSS---SLLAIVGAG   67 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~-----d~~~la~g~~~g~~v~d~~~~---~~~~~~----~~~~~~~~~~~~~~---~~~~~~~~g   67 (342)
                      ++++..+|..++|++     +-..+|+.+.+.+.+|++...   +++...    +......+++..+.   +.+..++| 
T Consensus        34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G-  112 (385)
T KOG1034|consen   34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG-  112 (385)
T ss_pred             hccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec-
Confidence            456788999999995     334567777778899986533   222221    12334455665543   44544554 


Q ss_pred             CCCCCCCCeEEEEECCCCcEEEEEec-CCceEEEEEcCCe--EEE-EE-CCeEEEEECCCCceeeEEeC-CCCCceEEEE
Q 019349           68 EQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKR--LVI-VL-REKTYIYDANTLAILDTIDT-VPNLKGLCAF  141 (342)
Q Consensus        68 ~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~~-~~-d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~  141 (342)
                           .-+.|+|.|+.++++...+.. ...|..|.++|..  +++ ++ |..|++||+++..++..+.. ..+...+.++
T Consensus       113 -----~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSv  187 (385)
T KOG1034|consen  113 -----YLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSV  187 (385)
T ss_pred             -----ceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEE
Confidence                 378999999999999887764 4589999998875  444 33 88999999999999888743 3345678889


Q ss_pred             eeCCCccEEEEeCCCCccEEEEEEccCCc------ee----------------E------EEecccCCeeEEEECCCCCE
Q 019349          142 SPSLNACFLAVPASTTKGSVLVYNVMELH------SH----------------C------EIDAHQAPLAAIVLSSNGMY  193 (342)
Q Consensus       142 ~~~~~~~~l~~~~~~~~g~i~iwd~~~~~------~~----------------~------~~~~h~~~v~~i~~s~dg~~  193 (342)
                      .+++++.+++++|  .|-++++|++...+      ..                .      +-.-|...|-|+.|-  |++
T Consensus       188 D~~~~gd~i~ScG--mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~  263 (385)
T KOG1034|consen  188 DFSLDGDRIASCG--MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDF  263 (385)
T ss_pred             EEcCCCCeeeccC--CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhh
Confidence            9999999999999  69999999997321      00                0      123477888888885  579


Q ss_pred             EEEEeCCCcEEEEEEc-CCCeeEEEeccC-----------cCceeEEEEEE--ecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          194 IATASEQGTIIRVFLV-SEATKSYSFRRG-----------TYPSTIFSLSF--GQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       194 lat~s~dg~~irlwd~-~~~~~~~~~~~~-----------~~~~~v~~l~f--s~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      +++=|-++.+ ..|-. +-++.+.+..+.           ...+.++-|.|  .|-++   +||.|...|.|.+||++..
T Consensus       264 ilSkscenaI-~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~---~la~gnq~g~v~vwdL~~~  339 (385)
T KOG1034|consen  264 ILSKSCENAI-VCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQK---MLALGNQSGKVYVWDLDNN  339 (385)
T ss_pred             eeecccCceE-EEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHH---HHhhccCCCcEEEEECCCC
Confidence            9998888875 58977 222222222111           11234555555  55567   9999999999999999987


Q ss_pred             CCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          260 INQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                      .++........    ....           ++.  ..+|..++..|+..|.||+|..|+.
T Consensus       340 ep~~~ttl~~s----~~~~-----------tVR--Q~sfS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  340 EPPKCTTLTHS----KSGS-----------TVR--QTSFSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             CCccCceEEec----cccc-----------eee--eeeecccCcEEEEEeCCCcEEEEEe
Confidence            76431110000    0000           011  1123445578999999999999975

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.77  E-value=6.8e-17  Score=140.97  Aligned_cols=241  Identities=13%  Similarity=0.154  Sum_probs=160.8

Q ss_pred             CCCCeEEEEEcCCCC--EEEEEcCCc-EEEEeCCCC------cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            6 SSYPVFFVSFNQDNS--GFALSTKDG-FKIFDSSTG------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~--~la~g~~~g-~~v~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      ++.+|++++|+|..+  .+|+|...| +-+||+.+.      -.++..+.+++..+.+.+...-.++.+.      .|++
T Consensus       185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssS------yDGt  258 (498)
T KOG4328|consen  185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSS------YDGT  258 (498)
T ss_pred             cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeec------cCce
Confidence            567899999999776  466676666 799999422      2344455566766666654433333332      4999


Q ss_pred             EEEEECCCCcEEEEEec--CC-ceEEEEEcCC-eEEEEEC--CeEEEEECCCCce-eeEEeCCCCCceEEEEeeCCCc-c
Q 019349           77 LCLFNTTTGTALRELNF--LT-SILAVRLNKK-RLVIVLR--EKTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNA-C  148 (342)
Q Consensus        77 i~iwd~~~~~~~~~~~~--~~-~v~~i~~~~~-~~~~~~d--~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~  148 (342)
                      |++-|++++..-..+..  .. -..++.++.+ ..++..+  |...+||++.++. ...+..+..  .++.++.+|.. .
T Consensus       259 iR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~k--KI~sv~~NP~~p~  336 (498)
T KOG4328|consen  259 IRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKK--KITSVALNPVCPW  336 (498)
T ss_pred             eeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhc--ccceeecCCCCch
Confidence            99999987653332322  11 3445555443 3344443  4789999987654 444444444  56667776644 4


Q ss_pred             EEEEeCCCCccEEEEEEccCCce----eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC----CCeeEEEecc
Q 019349          149 FLAVPASTTKGSVLVYNVMELHS----HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS----EATKSYSFRR  220 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~~----~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~----~~~~~~~~~~  220 (342)
                      ++|+++  .|++++|||+++...    +.....|...|++..|||+|-.|+|-+.|.+ |||||..    .-.....++.
T Consensus       337 ~laT~s--~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~-IRv~dss~~sa~~~p~~~I~H  413 (498)
T KOG4328|consen  337 FLATAS--LDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNE-IRVFDSSCISAKDEPLGTIPH  413 (498)
T ss_pred             heeecc--cCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCc-eEEeecccccccCCccceeec
Confidence            667776  699999999976432    3344579999999999998888999999987 6999983    2333333321


Q ss_pred             CcCc---eeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          221 GTYP---STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       221 ~~~~---~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      ....   -...-.+|.||..   ++++|-.-..|-|||-+.++
T Consensus       414 n~~t~RwlT~fKA~W~P~~~---li~vg~~~r~IDv~~~~~~q  453 (498)
T KOG4328|consen  414 NNRTGRWLTPFKAAWDPDYN---LIVVGRYPRPIDVFDGNGGQ  453 (498)
T ss_pred             cCcccccccchhheeCCCcc---EEEEeccCcceeEEcCCCCE
Confidence            1111   1245578999988   99999998999999976655

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.77  E-value=1.5e-18  Score=151.48  Aligned_cols=226  Identities=16%  Similarity=0.291  Sum_probs=185.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349            8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~   85 (342)
                      -.-+.+.++.+|++|+.|+.+| +--+|+.++++.++.+. ..+.-+.++++.+++|++        ..+.+.||| ..|
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVA--------QK~y~yvYD-~~G  200 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVA--------QKKYVYVYD-NNG  200 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhh--------hhceEEEec-CCC
Confidence            3457889999999999999988 68999999999888765 556677888888888765        468899999 468


Q ss_pred             cEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEE
Q 019349           86 TALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVL  162 (342)
Q Consensus        86 ~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~  162 (342)
                      ..+..+.....|..+.|-|.++++++   .|.++.-|+.+|+++..+.+....  +-.++.+|-+..+-++.  .+|+|.
T Consensus       201 tElHClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~--~~vm~qNP~NaVih~Gh--snGtVS  276 (545)
T KOG1272|consen  201 TELHCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR--TDVMKQNPYNAVIHLGH--SNGTVS  276 (545)
T ss_pred             cEEeehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCc--cchhhcCCccceEEEcC--CCceEE
Confidence            88888888889999999998877766   568999999999999998776553  44566777777776665  589999


Q ss_pred             EEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEE
Q 019349          163 VYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL  242 (342)
Q Consensus       163 iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l  242 (342)
                      +|.....+++..+..|.++|.+|++.++|+|+||++.|.. ++|||+++-..+.++..   +.+...++||..|    +|
T Consensus       277 lWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~-~kIWDlR~~~ql~t~~t---p~~a~~ls~Sqkg----lL  348 (545)
T KOG1272|consen  277 LWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRK-VKIWDLRNFYQLHTYRT---PHPASNLSLSQKG----LL  348 (545)
T ss_pred             ecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccc-eeEeeeccccccceeec---CCCcccccccccc----ce
Confidence            9999999999999999999999999999999999999987 59999998877776643   3446778999877    35


Q ss_pred             EEEeCCCcEEEEe
Q 019349          243 VATSSSGSLHVFS  255 (342)
Q Consensus       243 ~~~s~dg~i~vwd  255 (342)
                      |.+ ....|.||.
T Consensus       349 A~~-~G~~v~iw~  360 (545)
T KOG1272|consen  349 ALS-YGDHVQIWK  360 (545)
T ss_pred             eee-cCCeeeeeh
Confidence            544 445799995

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.77  E-value=1.3e-17  Score=153.77  Aligned_cols=197  Identities=9%  Similarity=0.150  Sum_probs=138.1

Q ss_pred             eEEEEEc---CCeEEEEE-CCeEEEEECCC---CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC
Q 019349           97 ILAVRLN---KKRLVIVL-REKTYIYDANT---LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL  169 (342)
Q Consensus        97 v~~i~~~---~~~~~~~~-d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~  169 (342)
                      +.++.|+   .+.++.+. .|.|.+||+..   .+++..+..|  ...+..+.+++-...++.+|+ +||+|++||++..
T Consensus        90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH--~Rs~~~ldfh~tep~iliSGS-QDg~vK~~DlR~~  166 (839)
T KOG0269|consen   90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEH--ERSANKLDFHSTEPNILISGS-QDGTVKCWDLRSK  166 (839)
T ss_pred             hhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhh--ccceeeeeeccCCccEEEecC-CCceEEEEeeecc
Confidence            4445554   34555555 78999999976   3444445443  335556666665555555665 7999999999999


Q ss_pred             ceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC
Q 019349          170 HSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS  248 (342)
Q Consensus       170 ~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d  248 (342)
                      +...++.+....|..|.|+| .+.+++++.+.|. +++||++.... ..++...|.++|.|+.|+|++.   +||+|+.|
T Consensus       167 ~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~-lqlWDlRqp~r-~~~k~~AH~GpV~c~nwhPnr~---~lATGGRD  241 (839)
T KOG0269|consen  167 KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGY-LQLWDLRQPDR-CEKKLTAHNGPVLCLNWHPNRE---WLATGGRD  241 (839)
T ss_pred             cccccccccchhhhceeeccCCCceEEEecCCce-EEEeeccCchh-HHHHhhcccCceEEEeecCCCc---eeeecCCC
Confidence            98888888888999999999 6788999998886 58999987543 2222335678899999999888   99999999


Q ss_pred             CcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe--CCcEEEEEEe
Q 019349          249 GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY--NGYFVEYIFS  320 (342)
Q Consensus       249 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--dg~v~~~~~~  320 (342)
                      +.|+|||+..+.....     ..+...-| .-...|-|+..             ..|+++++  |-.|++|++.
T Consensus       242 K~vkiWd~t~~~~~~~-----~tInTiap-v~rVkWRP~~~-------------~hLAtcsmv~dtsV~VWDvr  296 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPK-----HTINTIAP-VGRVKWRPARS-------------YHLATCSMVVDTSVHVWDVR  296 (839)
T ss_pred             ccEEEEeccCCCccce-----eEEeecce-eeeeeeccCcc-------------chhhhhhccccceEEEEeec
Confidence            9999999987553221     11111111 11235777652             34555554  7778999874

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.76  E-value=1.7e-16  Score=144.92  Aligned_cols=221  Identities=13%  Similarity=0.189  Sum_probs=160.3

Q ss_pred             EEEcC-CCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349           13 VSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (342)
Q Consensus        13 l~fs~-d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~   90 (342)
                      +++-+ |+-.|++|+.|+ +.+|.+.+...++.+..|.-.+++........ ++++     +.|.++++|-.  +++...
T Consensus        64 i~y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~~-~iSg-----SWD~TakvW~~--~~l~~~  135 (745)
T KOG0301|consen   64 ICYAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDGT-LISG-----SWDSTAKVWRI--GELVYS  135 (745)
T ss_pred             ceeccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcCc-eEec-----ccccceEEecc--hhhhcc
Confidence            55554 444578888777 48999988876665544333333332222222 4454     47999999975  445544


Q ss_pred             Ee-cCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc
Q 019349           91 LN-FLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM  167 (342)
Q Consensus        91 ~~-~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~  167 (342)
                      .. |+..|.++..-++..++.+  |.+|++|.-  +++++++..|.+.  +-.++.-++. .+++++  .||.|+.|++ 
T Consensus       136 l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~--~~~l~tf~gHtD~--VRgL~vl~~~-~flScs--NDg~Ir~w~~-  207 (745)
T KOG0301|consen  136 LQGHTASVWAVASLPENTYVTGSADKTIKLWKG--GTLLKTFSGHTDC--VRGLAVLDDS-HFLSCS--NDGSIRLWDL-  207 (745)
T ss_pred             cCCcchheeeeeecCCCcEEeccCcceeeeccC--Cchhhhhccchhh--eeeeEEecCC-CeEeec--CCceEEEEec-
Confidence            44 5568999888777666544  899999985  6778888776654  3334433333 455666  6999999999 


Q ss_pred             CCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCce-eEEEEEEecCCCcccEEEEEe
Q 019349          168 ELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS-TIFSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       168 ~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~-~v~~l~fs~d~~~~~~l~~~s  246 (342)
                      +++++....+|++-|.+++..+++..++++++|++ +|+|+..  ++...+.   +++ .|+++.+-++|.    +++|+
T Consensus       208 ~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrt-lriW~~~--e~~q~I~---lPttsiWsa~~L~NgD----Ivvg~  277 (745)
T KOG0301|consen  208 DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRT-LRIWKKD--ECVQVIT---LPTTSIWSAKVLLNGD----IVVGG  277 (745)
T ss_pred             cCceeeeeeccceEEEEEEecCCCCeEEEecCCce-EEEeecC--ceEEEEe---cCccceEEEEEeeCCC----EEEec
Confidence            78899999999999999998888899999999998 5999986  5555553   233 589999988997    99999


Q ss_pred             CCCcEEEEecCCC
Q 019349          247 SSGSLHVFSPGFA  259 (342)
Q Consensus       247 ~dg~i~vwd~~~~  259 (342)
                      +||.||||..+..
T Consensus       278 SDG~VrVfT~~k~  290 (745)
T KOG0301|consen  278 SDGRVRVFTVDKD  290 (745)
T ss_pred             cCceEEEEEeccc
Confidence            9999999987743

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=5.8e-18  Score=162.16  Aligned_cols=223  Identities=11%  Similarity=0.165  Sum_probs=154.5

Q ss_pred             CCCeEEEEECCC---CcEE---EE-EecCCceEEEEEcCCeE-EEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEE
Q 019349           73 SPRRLCLFNTTT---GTAL---RE-LNFLTSILAVRLNKKRL-VIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAF  141 (342)
Q Consensus        73 ~d~~i~iwd~~~---~~~~---~~-~~~~~~v~~i~~~~~~~-~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~  141 (342)
                      .||.|.+||...   +...   .+ -.+.+.|+++.|++..- ++++   ++.|.|||+.+.+.-........+..+.++
T Consensus        88 edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~l  167 (1049)
T KOG0307|consen   88 EDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCL  167 (1049)
T ss_pred             cCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEe
Confidence            699999999764   3222   22 24677999999988643 4444   779999999876544444333345678889


Q ss_pred             eeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccC--CeeEEEECCCC-CEEEEEeCCCc--EEEEEEcCCCe-eE
Q 019349          142 SPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA--PLAAIVLSSNG-MYIATASEQGT--IIRVFLVSEAT-KS  215 (342)
Q Consensus       142 ~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~--~v~~i~~s~dg-~~lat~s~dg~--~irlwd~~~~~-~~  215 (342)
                      +++-....+.++++ .+|.+.|||++..+++..+.-|..  .+..++|+|++ ..|+++++|..  +|++||++.-. .+
T Consensus       168 sWNrkvqhILAS~s-~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~  246 (1049)
T KOG0307|consen  168 SWNRKVSHILASGS-PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPL  246 (1049)
T ss_pred             ccchhhhHHhhccC-CCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCch
Confidence            98876555555554 689999999999888877765554  47889999976 56778877653  58899988643 34


Q ss_pred             EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeec
Q 019349          216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNA  295 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (342)
                      ++++ + |...|.+|.|++.+.  ++|++++.|+.|.+|+.++++..........+       .+..-|.|..       
T Consensus       247 k~~~-~-H~~GilslsWc~~D~--~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW-------~fdv~w~pr~-------  308 (1049)
T KOG0307|consen  247 KILE-G-HQRGILSLSWCPQDP--RLLLSSGKDNRIICWNPNTGEVLGELPAQGNW-------CFDVQWCPRN-------  308 (1049)
T ss_pred             hhhc-c-cccceeeeccCCCCc--hhhhcccCCCCeeEecCCCceEeeecCCCCcc-------eeeeeecCCC-------
Confidence            4443 2 344599999998773  29999999999999999886542211100000       1222344433       


Q ss_pred             cCCCccccEEEEEEeCCcEEEEEEe
Q 019349          296 FPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       296 ~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                          +  ..+.+.+.||.|.||.+-
T Consensus       309 ----P--~~~A~asfdgkI~I~sl~  327 (1049)
T KOG0307|consen  309 ----P--SVMAAASFDGKISIYSLQ  327 (1049)
T ss_pred             ----c--chhhhheeccceeeeeee
Confidence                1  368888889999999984

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=1.6e-16  Score=134.14  Aligned_cols=188  Identities=11%  Similarity=0.167  Sum_probs=136.9

Q ss_pred             CCCeEEEEECCCCcEEEEEecCC-ceEEEEE----cCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCC-ceEEEEeeCC
Q 019349           73 SPRRLCLFNTTTGTALRELNFLT-SILAVRL----NKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL-KGLCAFSPSL  145 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~-~v~~i~~----~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~  145 (342)
                      +.+.|+++|..+++.+..+..+. .+..+.|    +++.+..++ ||+|++||++.......+....++ ....+++.+-
T Consensus        48 Sngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nc  127 (376)
T KOG1188|consen   48 SNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNC  127 (376)
T ss_pred             cCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccC
Confidence            47899999999999988887543 5666666    355666666 999999999987655555444443 4556677655


Q ss_pred             CccEEEEeCC--CCccEEEEEEccCCce-eEE-EecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349          146 NACFLAVPAS--TTKGSVLVYNVMELHS-HCE-IDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRR  220 (342)
Q Consensus       146 ~~~~l~~~~~--~~~g~i~iwd~~~~~~-~~~-~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~  220 (342)
                      +...++++.-  ..+-.|.+||++..+. +.. ...|...|++++|.| +-++|+|||.|| ++.|||++....-..+..
T Consensus       128 k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDG-LvnlfD~~~d~EeDaL~~  206 (376)
T KOG1188|consen  128 KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDG-LVNLFDTKKDNEEDALLH  206 (376)
T ss_pred             cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccc-eEEeeecCCCcchhhHHH
Confidence            5666665531  1467899999998776 544 467999999999999 568999999999 578999976532211111


Q ss_pred             C-cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          221 G-TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       221 ~-~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      . .+.+.|.++.|..++.  ..|.+-+...+..+|+++.+++.-
T Consensus       207 viN~~sSI~~igw~~~~y--krI~clTH~Etf~~~ele~~~~~~  248 (376)
T KOG1188|consen  207 VINHGSSIHLIGWLSKKY--KRIMCLTHMETFAIYELEDGSEET  248 (376)
T ss_pred             hhcccceeeeeeeecCCc--ceEEEEEccCceeEEEccCCChhh
Confidence            0 1234599999998883  258888999999999999877543

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.75  E-value=1.7e-16  Score=139.88  Aligned_cols=267  Identities=11%  Similarity=0.082  Sum_probs=181.1

Q ss_pred             CEEEEEcCCcEEEEeCCCCcE--EEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc----EEEEE
Q 019349           20 SGFALSTKDGFKIFDSSTGRL--CYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT----ALREL   91 (342)
Q Consensus        20 ~~la~g~~~g~~v~d~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~----~~~~~   91 (342)
                      +++++++.|.+++||....+.  .+..+  .+++..+.|..... +.+.+.+     .|+.+++|.-. |+    ++...
T Consensus         4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~-----gdk~~~~~~K~-g~~~~Vp~~~k   76 (673)
T KOG4378|consen    4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMA-----GDKVMRIKEKD-GKTPEVPRVRK   76 (673)
T ss_pred             ceeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecC-----CceeEEEeccc-CCCCccceeec
Confidence            466777788899999865432  22222  24455555544433 5555443     48899999732 32    11111


Q ss_pred             ecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC
Q 019349           92 NFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME  168 (342)
Q Consensus        92 ~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~  168 (342)
                      .....-.|+......++.++   .+.|+|||++...+.+.+..|.  ..+.++.++-...+||...  ..|.|.|..+.+
T Consensus        77 ~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~--stvt~v~YN~~DeyiAsvs--~gGdiiih~~~t  152 (673)
T KOG4378|consen   77 LTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ--STVTYVDYNNTDEYIASVS--DGGDIIIHGTKT  152 (673)
T ss_pred             cccchHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCc--ceeEEEEecCCcceeEEec--cCCcEEEEeccc
Confidence            11123344444444444444   6799999999665566666554  5677888887788999887  579999999999


Q ss_pred             CceeEEEecc-cCCeeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe
Q 019349          169 LHSHCEIDAH-QAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       169 ~~~~~~~~~h-~~~v~~i~~s~dg~-~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s  246 (342)
                      +....+|... ...|.-+.|+|.-+ +|.++|.+|. +.+||+....++..+.. .|.++...++|+|.+..  +|++.+
T Consensus       153 ~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~-VtlwDv~g~sp~~~~~~-~HsAP~~gicfspsne~--l~vsVG  228 (673)
T KOG4378|consen  153 KQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGA-VTLWDVQGMSPIFHASE-AHSAPCRGICFSPSNEA--LLVSVG  228 (673)
T ss_pred             CccccceecCCCCeEEEeecccccceeeEeeccCCe-EEEEeccCCCcccchhh-hccCCcCcceecCCccc--eEEEec
Confidence            8877777644 44567999999665 5778888887 57999987777776643 45778889999998762  888899


Q ss_pred             CCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349          247 SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       247 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                      .|..|.+||+.......       .+..-         +|      ...++|++.+.+|++|++.|.++.|++...+
T Consensus       229 ~Dkki~~yD~~s~~s~~-------~l~y~---------~P------lstvaf~~~G~~L~aG~s~G~~i~YD~R~~k  283 (673)
T KOG4378|consen  229 YDKKINIYDIRSQASTD-------RLTYS---------HP------LSTVAFSECGTYLCAGNSKGELIAYDMRSTK  283 (673)
T ss_pred             ccceEEEeecccccccc-------eeeec---------CC------cceeeecCCceEEEeecCCceEEEEecccCC
Confidence            99999999988443211       11110         11      1355677778999999999999999986543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.73  E-value=5.5e-15  Score=135.10  Aligned_cols=117  Identities=17%  Similarity=0.291  Sum_probs=96.0

Q ss_pred             EEEEeeCCCccEEEEeCCC---CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee
Q 019349          138 LCAFSPSLNACFLAVPAST---TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK  214 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~---~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~  214 (342)
                      +.+++.+|++.++|++...   ....|++|+..+-..++.+++|.-.|+.|+|||||++|++.|.|.+ ..+|.......
T Consensus       528 v~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt-~sl~~~~~~~~  606 (764)
T KOG1063|consen  528 VYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRT-VSLYEVQEDIK  606 (764)
T ss_pred             EEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCce-EEeeeeecccc
Confidence            6788888889999987632   2357999999998888899999999999999999999999999987 58999855432


Q ss_pred             EEEec---cCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          215 SYSFR---RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       215 ~~~~~---~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                       .+++   ...|..-|.+..|+|++.   +||++|.|.+|+||.....
T Consensus       607 -~e~~fa~~k~HtRIIWdcsW~pde~---~FaTaSRDK~VkVW~~~~~  650 (764)
T KOG1063|consen  607 -DEFRFACLKAHTRIIWDCSWSPDEK---YFATASRDKKVKVWEEPDL  650 (764)
T ss_pred             -hhhhhccccccceEEEEcccCcccc---eeEEecCCceEEEEeccCc
Confidence             1221   123445599999999999   9999999999999998765

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=1.7e-15  Score=126.87  Aligned_cols=199  Identities=15%  Similarity=0.208  Sum_probs=141.6

Q ss_pred             EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc-----EEE-EEecCCceEEEEEcCCe--EEEEE--CC
Q 019349           44 RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT-----ALR-ELNFLTSILAVRLNKKR--LVIVL--RE  113 (342)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~-----~~~-~~~~~~~v~~i~~~~~~--~~~~~--d~  113 (342)
                      .|.+.+..+++..++..++++++       |++|++|+++.-.     +++ .++. ...+.+.|.||-  +++..  .+
T Consensus        84 gH~~~vt~~~FsSdGK~lat~~~-------Dr~Ir~w~~~DF~~~eHr~~R~nve~-dhpT~V~FapDc~s~vv~~~~g~  155 (420)
T KOG2096|consen   84 GHKKEVTDVAFSSDGKKLATISG-------DRSIRLWDVRDFENKEHRCIRQNVEY-DHPTRVVFAPDCKSVVVSVKRGN  155 (420)
T ss_pred             ccCCceeeeEEcCCCceeEEEeC-------CceEEEEecchhhhhhhhHhhccccC-CCceEEEECCCcceEEEEEccCC
Confidence            35567888888888899999987       9999999987532     111 1222 255778888874  33333  67


Q ss_pred             eEEEEECCC---CceeeEE---e---C-CCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCee
Q 019349          114 KTYIYDANT---LAILDTI---D---T-VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLA  183 (342)
Q Consensus       114 ~i~i~d~~~---~~~~~~~---~---~-~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~  183 (342)
                      ++++|.+..   |.....+   +   . ..+...+..+-..+++.+|++++  .|..|.+|+++ |+.+.++......-.
T Consensus       156 ~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas--~dt~i~lw~lk-Gq~L~~idtnq~~n~  232 (420)
T KOG2096|consen  156 KLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS--LDTKICLWDLK-GQLLQSIDTNQSSNY  232 (420)
T ss_pred             EEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEec--CCCcEEEEecC-Cceeeeecccccccc
Confidence            999998732   2221111   0   0 01123344555566778998888  57889999999 888888887777778


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEEcC---CCe-----eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          184 AIVLSSNGMYIATASEQGTIIRVFLVS---EAT-----KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       184 ~i~~s~dg~~lat~s~dg~~irlwd~~---~~~-----~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      ..++||+|++||+++---. +++|.+-   .|+     .+.++.  .|.+.|..++||++.+   .+++.|.||+++|||
T Consensus       233 ~aavSP~GRFia~~gFTpD-VkVwE~~f~kdG~fqev~rvf~Lk--GH~saV~~~aFsn~S~---r~vtvSkDG~wriwd  306 (420)
T KOG2096|consen  233 DAAVSPDGRFIAVSGFTPD-VKVWEPIFTKDGTFQEVKRVFSLK--GHQSAVLAAAFSNSST---RAVTVSKDGKWRIWD  306 (420)
T ss_pred             ceeeCCCCcEEEEecCCCC-ceEEEEEeccCcchhhhhhhheec--cchhheeeeeeCCCcc---eeEEEecCCcEEEee
Confidence            8899999999999987665 5899863   332     233343  3456699999999999   999999999999999


Q ss_pred             cCCC
Q 019349          256 PGFA  259 (342)
Q Consensus       256 ~~~~  259 (342)
                      .+-.
T Consensus       307 tdVr  310 (420)
T KOG2096|consen  307 TDVR  310 (420)
T ss_pred             ccce
Confidence            8654

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=2.4e-14  Score=128.76  Aligned_cols=273  Identities=12%  Similarity=0.076  Sum_probs=163.7

Q ss_pred             EEEcCCcEEEEeCCC-CcEE--EEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC-CCcE--EEEEecCC
Q 019349           23 ALSTKDGFKIFDSST-GRLC--YERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT-TGTA--LRELNFLT   95 (342)
Q Consensus        23 a~g~~~g~~v~d~~~-~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~-~~~~--~~~~~~~~   95 (342)
                      +.+.++++++|++.+ +++.  .... .+....+.+.++.+.+.+++.      .++.|.+|++. +++.  +.......
T Consensus         7 ~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~------~~~~i~~~~~~~~g~l~~~~~~~~~~   80 (330)
T PRK11028          7 ASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVR------PEFRVLSYRIADDGALTFAAESPLPG   80 (330)
T ss_pred             EcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEEC------CCCcEEEEEECCCCceEEeeeecCCC
Confidence            334556789999964 4432  2221 234445666777777766554      37889999986 3432  33344444


Q ss_pred             ceEEEEEcCCe--EEEEE--CCeEEEEECCC-CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc
Q 019349           96 SILAVRLNKKR--LVIVL--REKTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (342)
Q Consensus        96 ~v~~i~~~~~~--~~~~~--d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~  170 (342)
                      ....+.+++++  ++++.  ++.|.+|++.. +.................+..+|++.++++++. .++.|.+||+.+..
T Consensus        81 ~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~-~~~~v~v~d~~~~g  159 (330)
T PRK11028         81 SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCL-KEDRIRLFTLSDDG  159 (330)
T ss_pred             CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeC-CCCEEEEEEECCCC
Confidence            66788888764  55554  78999999964 322111211111112334456777878876665 57999999997633


Q ss_pred             eeE-------EEecccCCeeEEEECCCCCEEEEEeC-CCcEEEEEEcCC--Ce--eEEEeccCc----CceeEEEEEEec
Q 019349          171 SHC-------EIDAHQAPLAAIVLSSNGMYIATASE-QGTIIRVFLVSE--AT--KSYSFRRGT----YPSTIFSLSFGQ  234 (342)
Q Consensus       171 ~~~-------~~~~h~~~v~~i~~s~dg~~lat~s~-dg~~irlwd~~~--~~--~~~~~~~~~----~~~~v~~l~fs~  234 (342)
                      .+.       .+.. ......++|+|||++|+++.+ +++ |.+||+..  ++  .+.++....    .+.....+.|+|
T Consensus       160 ~l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~-v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p  237 (330)
T PRK11028        160 HLVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSS-VDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP  237 (330)
T ss_pred             cccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCE-EEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC
Confidence            221       1111 234678999999999988887 555 67999973  32  233332110    111234688999


Q ss_pred             CCCcccEEEEEe-CCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe-CC
Q 019349          235 SMQFQDILVATS-SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY-NG  312 (342)
Q Consensus       235 d~~~~~~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg  312 (342)
                      |++   +|+++. .+++|.+|+++......      ...+ ..+.    -+.|.       .+.+.+++++|++++. ++
T Consensus       238 dg~---~lyv~~~~~~~I~v~~i~~~~~~~------~~~~-~~~~----~~~p~-------~~~~~~dg~~l~va~~~~~  296 (330)
T PRK11028        238 DGR---HLYACDRTASLISVFSVSEDGSVL------SFEG-HQPT----ETQPR-------GFNIDHSGKYLIAAGQKSH  296 (330)
T ss_pred             CCC---EEEEecCCCCeEEEEEEeCCCCeE------EEeE-EEec----cccCC-------ceEECCCCCEEEEEEccCC
Confidence            999   888875 47899999996543211      0011 1000    01111       1233556688988886 99


Q ss_pred             cEEEEEEecCCCC
Q 019349          313 YFVEYIFSINNCC  325 (342)
Q Consensus       313 ~v~~~~~~~~~~~  325 (342)
                      .|.+|.++.+.+.
T Consensus       297 ~v~v~~~~~~~g~  309 (330)
T PRK11028        297 HISVYEIDGETGL  309 (330)
T ss_pred             cEEEEEEcCCCCc
Confidence            9999999865543

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.72  E-value=6.9e-16  Score=139.73  Aligned_cols=244  Identities=13%  Similarity=0.161  Sum_probs=159.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEE----EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLC----YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      -|...|..+.|-|...+|++++.| .+++||+.+.++.    +-.|.+.+..+++......++ +.||     .|+.|.|
T Consensus        98 aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF-~tGg-----RDg~ill  171 (720)
T KOG0321|consen   98 AHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVF-CTGG-----RDGEILL  171 (720)
T ss_pred             cccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcce-eecc-----CCCcEEE
Confidence            467889999999966678777665 4799999988664    334555666566555444443 3333     6999999


Q ss_pred             EECCCCcE---------EE-EEe----------------------cCCceEEEEEcCC-eEEEEE--CCeEEEEECCCCc
Q 019349           80 FNTTTGTA---------LR-ELN----------------------FLTSILAVRLNKK-RLVIVL--REKTYIYDANTLA  124 (342)
Q Consensus        80 wd~~~~~~---------~~-~~~----------------------~~~~v~~i~~~~~-~~~~~~--d~~i~i~d~~~~~  124 (342)
                      ||++-...         +. ..+                      ..+.|+.+.|..+ .++.++  |+.|++||++...
T Consensus       172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~  251 (720)
T KOG0321|consen  172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY  251 (720)
T ss_pred             EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence            99863220         00 000                      0123445555443 333344  8899999998643


Q ss_pred             eeeE------EeCCCC---CceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc--eeEEEecccC---CeeEEEECCC
Q 019349          125 ILDT------IDTVPN---LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH--SHCEIDAHQA---PLAAIVLSSN  190 (342)
Q Consensus       125 ~~~~------~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~~h~~---~v~~i~~s~d  190 (342)
                      ....      ...+.+   ..+++++..+..|.+|.+..  .|+.|..|++.+..  ++..+.+|..   .|.+ ..+||
T Consensus       252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsC--tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks-~lSpd  328 (720)
T KOG0321|consen  252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASC--TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKS-ELSPD  328 (720)
T ss_pred             cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEe--cCCcEEEEeccccCcCchhhccCcccceeeeee-ecCCC
Confidence            2211      112222   34677888777777877665  58999999997653  3444444322   1222 37899


Q ss_pred             CCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          191 GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       191 g~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +.+|++|+.|... .+|.+.+.+.-..+..+ +.-+|++++|.|....  -++++++|.+++||++..+-+
T Consensus       329 ~~~l~SgSsd~~a-yiw~vs~~e~~~~~l~G-ht~eVt~V~w~pS~~t--~v~TcSdD~~~kiW~l~~~l~  395 (720)
T KOG0321|consen  329 DCSLLSGSSDEQA-YIWVVSSPEAPPALLLG-HTREVTTVRWLPSATT--PVATCSDDFRVKIWRLSNGLE  395 (720)
T ss_pred             CceEeccCCCcce-eeeeecCccCChhhhhC-cceEEEEEeeccccCC--CceeeccCcceEEEeccCchh
Confidence            9999999999986 69999887654444444 3456999999775421  477889999999999966543

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.71  E-value=2.8e-14  Score=128.42  Aligned_cols=237  Identities=14%  Similarity=0.115  Sum_probs=150.6

Q ss_pred             CCeEEEEEcCCCCEEEEEcC--CcEEEEeCC-CCcEEEEEe---eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            8 YPVFFVSFNQDNSGFALSTK--DGFKIFDSS-TGRLCYERA---VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~--~g~~v~d~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .....++|+||+++|++++.  +++.+|+++ ++++.....   .+....+.+.++.+.+.++..      .++.|.+||
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~------~~~~v~v~~  108 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASY------NANCVSVSP  108 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEc------CCCeEEEEE
Confidence            45678999999999877643  457889886 444432211   123345667777777777664      478999999


Q ss_pred             CCC-C---cEEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEECCCCceee-----EEeCCCCCceEEEEeeCCCcc
Q 019349           82 TTT-G---TALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILD-----TIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        82 ~~~-~---~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~  148 (342)
                      +.+ +   +.+..+........+.++++.  ++++.  ++.|.+||+.+...+.     ...... ..+...+.++|++.
T Consensus       109 ~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~-g~~p~~~~~~pdg~  187 (330)
T PRK11028        109 LDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE-GAGPRHMVFHPNQQ  187 (330)
T ss_pred             ECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC-CCCCceEEECCCCC
Confidence            864 3   223333333356677788763  44444  6899999997643221     111111 12233456678888


Q ss_pred             EEEEeCCCCccEEEEEEccC--C--ceeEEEecc------cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe----e
Q 019349          149 FLAVPASTTKGSVLVYNVME--L--HSHCEIDAH------QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT----K  214 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~--~--~~~~~~~~h------~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~----~  214 (342)
                      +++++.. .+++|.+||+..  +  +.+..+..+      ......+.|+|||++|+++......|.+|++.+..    .
T Consensus       188 ~lyv~~~-~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~  266 (330)
T PRK11028        188 YAYCVNE-LNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSF  266 (330)
T ss_pred             EEEEEec-CCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEE
Confidence            8877664 489999999973  2  233444322      11234689999999999986644457899986432    2


Q ss_pred             EEEeccCcCceeEEEEEEecCCCcccEEEEEeC-CCcEEEEecCC
Q 019349          215 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGSLHVFSPGF  258 (342)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~-dg~i~vwd~~~  258 (342)
                      +.....+   .....++|+||++   +|+++.. +++|.+|+++.
T Consensus       267 ~~~~~~~---~~p~~~~~~~dg~---~l~va~~~~~~v~v~~~~~  305 (330)
T PRK11028        267 EGHQPTE---TQPRGFNIDHSGK---YLIAAGQKSHHISVYEIDG  305 (330)
T ss_pred             eEEEecc---ccCCceEECCCCC---EEEEEEccCCcEEEEEEcC
Confidence            2222211   1245789999999   7887765 89999999864

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=3.6e-15  Score=142.01  Aligned_cols=283  Identities=16%  Similarity=0.175  Sum_probs=180.3

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEee-----CCEEEEEEcCCC--CeEEEEcCCCCCCCCCCeEEEE
Q 019349            9 PVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAV-----GAFSIVEMLYSS--SLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      +-..+.|+|=..+++++.++ .++|||.+.++.+...+.     ..+..+.+...-  ..+++++       .|+.|+||
T Consensus      1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas-------~dGvIRIw 1138 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTAS-------SDGVIRIW 1138 (1387)
T ss_pred             CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeec-------cCceEEEe
Confidence            45678899988899988854 579999998887644332     234444444333  3333333       59999999


Q ss_pred             ECCC-----CcEEEEEec-----C---CceEEEEEcC--CeEEEEEC-CeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349           81 NTTT-----GTALRELNF-----L---TSILAVRLNK--KRLVIVLR-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPS  144 (342)
Q Consensus        81 d~~~-----~~~~~~~~~-----~---~~v~~i~~~~--~~~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  144 (342)
                      +-..     .+.+.....     +   +.-.-+.|..  ..+++.+| ..|+|||....+++..+....+ ..+.+++.+
T Consensus      1139 k~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~-t~vTaLS~~ 1217 (1387)
T KOG1517|consen 1139 KDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSS-TLVTALSAD 1217 (1387)
T ss_pred             cccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCC-ccceeeccc
Confidence            9532     233332221     0   0012233432  34444443 4899999999888888865433 456677765


Q ss_pred             CCccEEEEeCCCCccEEEEEEccCCc---eeEEEecccCC--eeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCeeEEE-
Q 019349          145 LNACFLAVPASTTKGSVLVYNVMELH---SHCEIDAHQAP--LAAIVLSSNGM-YIATASEQGTIIRVFLVSEATKSYS-  217 (342)
Q Consensus       145 ~~~~~l~~~~~~~~g~i~iwd~~~~~---~~~~~~~h~~~--v~~i~~s~dg~-~lat~s~dg~~irlwd~~~~~~~~~-  217 (342)
                      -....++.+|. .||.|++||.+...   .+...+.|...  |..+.+.+.|- .|++||.||. |++||++....... 
T Consensus      1218 ~~~gn~i~AGf-aDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~-I~~~DlR~~~~e~~~ 1295 (1387)
T KOG1517|consen 1218 LVHGNIIAAGF-ADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGD-IQLLDLRMSSKETFL 1295 (1387)
T ss_pred             ccCCceEEEee-cCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCe-EEEEecccCcccccc
Confidence            54433444555 69999999987654   46777889887  99999999775 4999999998 58999987422111 


Q ss_pred             -eccCcC-ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeec
Q 019349          218 -FRRGTY-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNA  295 (342)
Q Consensus       218 -~~~~~~-~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (342)
                       ...+.. .+.+++|..++...   .+|+|+. +.|+||++....... .+...++++    ......          ..
T Consensus      1296 ~iv~~~~yGs~lTal~VH~hap---iiAsGs~-q~ikIy~~~G~~l~~-~k~n~~F~~----q~~gs~----------sc 1356 (1387)
T KOG1517|consen 1296 TIVAHWEYGSALTALTVHEHAP---IIASGSA-QLIKIYSLSGEQLNI-IKYNPGFMG----QRIGSV----------SC 1356 (1387)
T ss_pred             eeeeccccCccceeeeeccCCC---eeeecCc-ceEEEEecChhhhcc-cccCccccc----CcCCCc----------ce
Confidence             111111 12489999999998   9999998 999999987654221 112223222    221111          12


Q ss_pred             cCCCccccEEEEEEeCCcEEEEEEe
Q 019349          296 FPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       296 ~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      ++|.|-.-.+++|..|.+|-+|.-.
T Consensus      1357 L~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1357 LAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred             eeecchhHhhhhccCCceEEEeecC
Confidence            2334443578888889999999653

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.69  E-value=4.2e-13  Score=122.71  Aligned_cols=243  Identities=16%  Similarity=0.243  Sum_probs=174.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCc-EEEEEee-C--CEEEEEE-cCCCCeEEEEcCCCCCCCCCCeE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGR-LCYERAV-G--AFSIVEM-LYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~-~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      ..+...|.++.|.+.+..++.++.+ .+.+|+..... ....... .  .+..... ..+....+....     ..++.+
T Consensus        62 ~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~d~~~  136 (466)
T COG2319          62 RGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASS-----SLDGTV  136 (466)
T ss_pred             eeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccC-----CCCccE
Confidence            3567889999999999998888755 47999988775 3333322 1  3444444 334442333322     148899


Q ss_pred             EEEECCC-CcEEEEEe-cCCceEEEEEcCCeE--EEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           78 CLFNTTT-GTALRELN-FLTSILAVRLNKKRL--VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        78 ~iwd~~~-~~~~~~~~-~~~~v~~i~~~~~~~--~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      .+||... ......+. +...|..+.++++..  +...  ++.+++|+...++.+..+..+..  .+.++.+.|++..++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~  214 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD--PVSSLAFSPDGGLLI  214 (466)
T ss_pred             EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCC--ceEEEEEcCCcceEE
Confidence            9999987 55555554 456888999988763  2232  67999999998777777765333  455666667776344


Q ss_pred             EeCCCCccEEEEEEccCCceeE-EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee-EEEeccCcCceeEEE
Q 019349          152 VPASTTKGSVLVYNVMELHSHC-EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-SYSFRRGTYPSTIFS  229 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~~~~~-~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~-~~~~~~~~~~~~v~~  229 (342)
                      .+.. .|+.|++||...+.... .+..|.... ...|+|++.++++++.|+. +++||+..... +..+ . .+...+.+
T Consensus       215 ~~~~-~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~-~-~~~~~v~~  289 (466)
T COG2319         215 ASGS-SDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGT-IRLWDLRSSSSLLRTL-S-GHSSSVLS  289 (466)
T ss_pred             EEec-CCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCc-EEEeeecCCCcEEEEE-e-cCCccEEE
Confidence            4422 68999999998887777 688888875 4489999999999999997 58999987665 4444 2 23456999


Q ss_pred             EEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +.|+|++.   .+++++.|+.+++|++.....
T Consensus       290 ~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~  318 (466)
T COG2319         290 VAFSPDGK---LLASGSSDGTVRLWDLETGKL  318 (466)
T ss_pred             EEECCCCC---EEEEeeCCCcEEEEEcCCCce
Confidence            99999887   788899999999998876654

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.69  E-value=4.5e-15  Score=122.94  Aligned_cols=232  Identities=13%  Similarity=0.190  Sum_probs=158.0

Q ss_pred             CCCCCCCeEEEEEcCCCC----EEEEEcCCcEEEEeCCC--CcEEEE----E-----eeCCEEEEEEcC-CCCeEEEEcC
Q 019349            3 NQSSSYPVFFVSFNQDNS----GFALSTKDGFKIFDSST--GRLCYE----R-----AVGAFSIVEMLY-SSSLLAIVGA   66 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~----~la~g~~~g~~v~d~~~--~~~~~~----~-----~~~~~~~~~~~~-~~~~~~~~~~   66 (342)
                      ...++.|++-+.|.|+..    .|.+.++|.+|+|.+..  .+....    .     ...++....|.. +++++.+.+-
T Consensus        92 ~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi  171 (364)
T KOG0290|consen   92 NFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI  171 (364)
T ss_pred             CCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence            347889999999999874    25556678899998763  322211    1     112333333322 3456655554


Q ss_pred             CCCCCCCCCeEEEEECCCCcE----EEEEecCCceEEEEEcCC---eEEEEE-CCeEEEEECCCCceeeEEeCCCC-Cce
Q 019349           67 GEQPSLSPRRLCLFNTTTGTA----LRELNFLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDTVPN-LKG  137 (342)
Q Consensus        67 g~~~~~~d~~i~iwd~~~~~~----~~~~~~~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~-~~~  137 (342)
                             |-+..|||++++..    .+-+.+..+|.+|+|.+.   .++.++ ||.+++||++...--..+-..+. ...
T Consensus       172 -------DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p  244 (364)
T KOG0290|consen  172 -------DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP  244 (364)
T ss_pred             -------cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc
Confidence                   89999999998733    344678889999999874   233333 99999999988643333322222 345


Q ss_pred             EEEEeeCC-CccEEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCee
Q 019349          138 LCAFSPSL-NACFLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATK  214 (342)
Q Consensus       138 ~~~~~~~~-~~~~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~  214 (342)
                      +.-+++++ |-.++|+-.. ....|.|.|++... ++..+.+|.+.|+.|+|.| ....|+||++|... -+||+.+.-.
T Consensus       245 LlRLswnkqDpnymATf~~-dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa-liWDl~q~~~  322 (364)
T KOG0290|consen  245 LLRLSWNKQDPNYMATFAM-DSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA-LIWDLQQMPR  322 (364)
T ss_pred             ceeeccCcCCchHHhhhhc-CCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceE-EEEecccccc
Confidence            66666654 3346666554 46789999998764 6788999999999999999 56789999999876 5999975422


Q ss_pred             ------EEEeccCcCceeEEEEEEecCCCcccEEEEEeCC
Q 019349          215 ------SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS  248 (342)
Q Consensus       215 ------~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d  248 (342)
                            +..+.   ..++|+.+.|++...  ++++.+...
T Consensus       323 ~~~~dPilay~---a~~EVNqi~Ws~~~~--Dwiai~~~k  357 (364)
T KOG0290|consen  323 ENGEDPILAYT---AGGEVNQIQWSSSQP--DWIAICFGK  357 (364)
T ss_pred             cCCCCchhhhh---ccceeeeeeecccCC--CEEEEEecC
Confidence                  11121   245799999997765  588877654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.69  E-value=1.6e-14  Score=125.93  Aligned_cols=277  Identities=12%  Similarity=0.122  Sum_probs=171.3

Q ss_pred             EEEEEcCCCCEEEEE-cCCc---E--EEEeCCCCcEEEEEee---CCE-EEEEEcC-------CCCeEEEEcCCCCCCCC
Q 019349           11 FFVSFNQDNSGFALS-TKDG---F--KIFDSSTGRLCYERAV---GAF-SIVEMLY-------SSSLLAIVGAGEQPSLS   73 (342)
Q Consensus        11 ~~l~fs~d~~~la~g-~~~g---~--~v~d~~~~~~~~~~~~---~~~-~~~~~~~-------~~~~~~~~~~g~~~~~~   73 (342)
                      -.+..-|+.++++++ .++.   +  .||+-.. .-.|..|.   ... .+++++.       .+|++|+...       
T Consensus       129 de~~V~psDnlIl~ar~eddvs~LEvYVyn~~e-~nlYvHHD~ilpafPLC~ewld~~~~~~~~gNyvAiGtm-------  200 (463)
T KOG0270|consen  129 DEEQVKPSDNLILCARNEDDVSYLEVYVYNEEE-ENLYVHHDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTM-------  200 (463)
T ss_pred             ccceeccCCcEEEEeeccCCceEEEEEEEcCCC-cceeEecceeccCcchhhhhhhcCCCCCCCcceEEEecc-------
Confidence            345566777777766 3443   3  4455332 22343332   111 2233332       2367776654       


Q ss_pred             CCeEEEEECCCCcEE---EEE-------------------ecCCceEEEEEcCCe-EEEEE---CCeEEEEECCCCceee
Q 019349           74 PRRLCLFNTTTGTAL---REL-------------------NFLTSILAVRLNKKR-LVIVL---REKTYIYDANTLAILD  127 (342)
Q Consensus        74 d~~i~iwd~~~~~~~---~~~-------------------~~~~~v~~i~~~~~~-~~~~~---d~~i~i~d~~~~~~~~  127 (342)
                      +..|.|||+.--..+   ..+                   .+...|..+.+++.. -++++   |.+|++||+.++++..
T Consensus       201 dp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~  280 (463)
T KOG0270|consen  201 DPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKPKS  280 (463)
T ss_pred             CceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCcce
Confidence            779999998521111   111                   022245667776642 23333   8899999999999988


Q ss_pred             EEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCcee-EEEecccCCeeEEEECCCC-CEEEEEeCCCcEEE
Q 019349          128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-CEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIR  205 (342)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~-~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~ir  205 (342)
                      ++..+..  .+.++.+++....+...|+ .|++|.+.|.+..... ..++ -.+.|..++|.|.. ..+..+..||+ +|
T Consensus       281 s~~~~~k--~Vq~l~wh~~~p~~LLsGs-~D~~V~l~D~R~~~~s~~~wk-~~g~VEkv~w~~~se~~f~~~tddG~-v~  355 (463)
T KOG0270|consen  281 SITHHGK--KVQTLEWHPYEPSVLLSGS-YDGTVALKDCRDPSNSGKEWK-FDGEVEKVAWDPHSENSFFVSTDDGT-VY  355 (463)
T ss_pred             ehhhcCC--ceeEEEecCCCceEEEecc-ccceEEeeeccCccccCceEE-eccceEEEEecCCCceeEEEecCCce-EE
Confidence            8874444  5666777665544444444 6999999999853322 2232 35679999999855 45666778887 58


Q ss_pred             EEEcCCC-eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccc
Q 019349          206 VFLVSEA-TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVL  284 (342)
Q Consensus       206 lwd~~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (342)
                      -+|+++. +++.++..  |..+|.+|++++...  ++|++++.|++|++|++....+.....+... ++-      .+.+
T Consensus       356 ~~D~R~~~~~vwt~~A--Hd~~ISgl~~n~~~p--~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~-~~r------l~c~  424 (463)
T KOG0270|consen  356 YFDIRNPGKPVWTLKA--HDDEISGLSVNIQTP--GLLSTASTDKVVKLWKFDVDSPKSVKEHSFK-LGR------LHCF  424 (463)
T ss_pred             eeecCCCCCceeEEEe--ccCCcceEEecCCCC--cceeeccccceEEEEeecCCCCccccccccc-ccc------eeec
Confidence            9999875 77887764  466799999998876  4999999999999999986654322111111 110      0111


Q ss_pred             cccccceeeeccCCCcc-ccEEEEEEeCCcEEEEEEecCC
Q 019349          285 DPADHHVLRNAFPAGVK-RASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       285 ~~~~~~~~~~~~~~~~~-~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                      .+            .++ .-.++.|+..+.+++|++-...
T Consensus       425 ~~------------~~~~a~~la~GG~k~~~~vwd~~~~~  452 (463)
T KOG0270|consen  425 AL------------DPDVAFTLAFGGEKAVLRVWDIFTNS  452 (463)
T ss_pred             cc------------CCCcceEEEecCccceEEEeecccCh
Confidence            11            111 1357778888889999876543

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=2.1e-14  Score=134.63  Aligned_cols=284  Identities=16%  Similarity=0.199  Sum_probs=181.6

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEee--CCEEEEEEcCCCC---eEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349           13 VSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV--GAFSIVEMLYSSS---LLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (342)
Q Consensus        13 l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~---~~~~~~~g~~~~~~d~~i~iwd~~~~~~   87 (342)
                      -.||+|++++.....+.+.||...++..+...+.  .++..+...++..   ++.+++       .+|+|++||...+..
T Consensus        22 avfSnD~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~s-------l~G~I~vwd~~~~~L   94 (792)
T KOG1963|consen   22 AVFSNDAKFLFLCTGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCS-------LDGTIRVWDWSDGEL   94 (792)
T ss_pred             cccccCCcEEEEeeCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEe-------cCccEEEecCCCcEE
Confidence            4799999999999999999999999977655443  3333344444432   334444       489999999999888


Q ss_pred             EEEEecCCceEEEEEc-----------------------------------------------------------C--Ce
Q 019349           88 LRELNFLTSILAVRLN-----------------------------------------------------------K--KR  106 (342)
Q Consensus        88 ~~~~~~~~~v~~i~~~-----------------------------------------------------------~--~~  106 (342)
                      +.++....++..+.+.                                                           +  ..
T Consensus        95 lkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge~  174 (792)
T KOG1963|consen   95 LKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGEF  174 (792)
T ss_pred             EEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCceE
Confidence            7766543322221110                                                           0  01


Q ss_pred             EEEEECCeEEEEECCCCceee--EEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC--C--ceeEEEecccC
Q 019349          107 LVIVLREKTYIYDANTLAILD--TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME--L--HSHCEIDAHQA  180 (342)
Q Consensus       107 ~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~--~--~~~~~~~~h~~  180 (342)
                      ..++.+..+++|+...+....  .-....+...+.+++.+|++.++|++.  .||.|.+|.--.  .  .....+.-|..
T Consensus       175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d--~dGrI~vw~d~~~~~~~~t~t~lHWH~~  252 (792)
T KOG1963|consen  175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGD--SDGRILVWRDFGSSDDSETCTLLHWHHD  252 (792)
T ss_pred             EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEec--cCCcEEEEeccccccccccceEEEeccc
Confidence            122234566777776543110  001112223356777888888999887  589999996322  2  23456778999


Q ss_pred             CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          181 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       181 ~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      +|++++|++||.+|.||+..|-++ +|.+.++++. -+++  -.++|..+.+|||+.   +.+...+|+.|++-......
T Consensus       253 ~V~~L~fS~~G~~LlSGG~E~VLv-~Wq~~T~~kq-fLPR--Lgs~I~~i~vS~ds~---~~sl~~~DNqI~li~~~dl~  325 (792)
T KOG1963|consen  253 EVNSLSFSSDGAYLLSGGREGVLV-LWQLETGKKQ-FLPR--LGSPILHIVVSPDSD---LYSLVLEDNQIHLIKASDLE  325 (792)
T ss_pred             ccceeEEecCCceEeecccceEEE-EEeecCCCcc-cccc--cCCeeEEEEEcCCCC---eEEEEecCceEEEEeccchh
Confidence            999999999999999999999765 9999998732 2222  246799999999998   89999999999999875443


Q ss_pred             CCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          261 NQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      ...+       +.++.|..-. .  .....-+...+...|..+.++-.+..|.|+.|++...
T Consensus       326 ~k~t-------Isgi~~~~~~-~--k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td  377 (792)
T KOG1963|consen  326 IKST-------ISGIKPPTPS-T--KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTD  377 (792)
T ss_pred             hhhh-------ccCccCCCcc-c--cccccccceeEEEcCCCCceeecCCCceEEEEecccc
Confidence            2211       2222211000 0  0000011122333455577888888899999987543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.69  E-value=4.2e-15  Score=135.44  Aligned_cols=268  Identities=13%  Similarity=0.134  Sum_probs=188.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      -|+.++|-|||+.|+.+.++.+-+||.+.|.++..  .|...+.++++..++..++..+       .|+.|.+|.-+ -+
T Consensus        14 ci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~-------aDK~VI~W~~k-lE   85 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGS-------ADKSVIIWTSK-LE   85 (1081)
T ss_pred             chheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCC-------CceeEEEeccc-cc
Confidence            68899999999999999989999999999977644  4556788888888887776443       59999999853 34


Q ss_pred             EEEEEecCCceEEEEEcCCeE--EEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEE
Q 019349           87 ALRELNFLTSILAVRLNKKRL--VIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVY  164 (342)
Q Consensus        87 ~~~~~~~~~~v~~i~~~~~~~--~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iw  164 (342)
                      -+..+.+...|.++.|+|-..  +.++-+..-+|........    .+.....+++.++..||++++.+-  .+|+|.|=
T Consensus        86 G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~----K~kss~R~~~CsWtnDGqylalG~--~nGTIsiR  159 (1081)
T KOG1538|consen   86 GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVS----KHKSSSRIICCSWTNDGQYLALGM--FNGTISIR  159 (1081)
T ss_pred             ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHH----hhhhheeEEEeeecCCCcEEEEec--cCceEEee
Confidence            556777888999999998643  3344556677876554322    222335678889999999999876  58999997


Q ss_pred             EccCCceeEEEe---cccCCeeEEEECCCC-----CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349          165 NVMELHSHCEID---AHQAPLAAIVLSSNG-----MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  236 (342)
Q Consensus       165 d~~~~~~~~~~~---~h~~~v~~i~~s~dg-----~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (342)
                      + .++++...+.   +..++|.+|+|+|..     ..++......+ +.++.+ +|+.+..-+.  -.-...|+.+-++|
T Consensus       160 N-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT-LSFy~L-sG~~Igk~r~--L~FdP~CisYf~NG  234 (1081)
T KOG1538|consen  160 N-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT-LSFYQL-SGKQIGKDRA--LNFDPCCISYFTNG  234 (1081)
T ss_pred             c-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce-eEEEEe-cceeeccccc--CCCCchhheeccCC
Confidence            6 3444444443   467899999999964     34566655554 334444 4555542211  11125788999999


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEE
Q 019349          237 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE  316 (342)
Q Consensus       237 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~  316 (342)
                      .   +++.|+.|+.+++|--+.- .          ++ .+.+.-..+|+.+-          .|.+.+++.||.||++-.
T Consensus       235 E---y~LiGGsdk~L~~fTR~Gv-r----------LG-Tvg~~D~WIWtV~~----------~PNsQ~v~~GCqDGTiAC  289 (1081)
T KOG1538|consen  235 E---YILLGGSDKQLSLFTRDGV-R----------LG-TVGEQDSWIWTVQA----------KPNSQYVVVGCQDGTIAC  289 (1081)
T ss_pred             c---EEEEccCCCceEEEeecCe-E----------Ee-eccccceeEEEEEE----------ccCCceEEEEEccCeeeh
Confidence            9   9999999999999963311 1          22 22222345676543          455579999999999999


Q ss_pred             EEEe
Q 019349          317 YIFS  320 (342)
Q Consensus       317 ~~~~  320 (342)
                      |++-
T Consensus       290 yNl~  293 (1081)
T KOG1538|consen  290 YNLI  293 (1081)
T ss_pred             hhhH
Confidence            9863

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.69  E-value=3.8e-14  Score=129.67  Aligned_cols=286  Identities=12%  Similarity=0.134  Sum_probs=179.2

Q ss_pred             CCCCCCCeEEEEEcCCCC---EEEEEcCCc-EEEEeCCCCc--EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            3 NQSSSYPVFFVSFNQDNS---GFALSTKDG-FKIFDSSTGR--LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~---~la~g~~~g-~~v~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      ...|..+|+|+.|-|+.+   ++++|+.|+ +++|.+....  .++..+.+...++++..........       ..|++
T Consensus        50 l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~~~~~~cv~a~~~~~~~~-------~ad~~  122 (764)
T KOG1063|consen   50 LDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGHCKECVCVVARSSVMTCK-------AADGT  122 (764)
T ss_pred             ccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEEEeecCcceeEEEEEeeeeEEEee-------ccCce
Confidence            357889999999999888   788888887 6999987332  2333333344444443222222221       25899


Q ss_pred             EEEEECCCCc--EEEEEecCC-ce--EEEEE--cCCeEEEEE---CCeEEEEECCCC--ceeeEEeCCCCCceEEEEeeC
Q 019349           77 LCLFNTTTGT--ALRELNFLT-SI--LAVRL--NKKRLVIVL---REKTYIYDANTL--AILDTIDTVPNLKGLCAFSPS  144 (342)
Q Consensus        77 i~iwd~~~~~--~~~~~~~~~-~v--~~i~~--~~~~~~~~~---d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~  144 (342)
                      +.+||.+..+  +...+.+.. .+  .+++.  +++.++++.   +..|.+|.-...  +.+.++..|.+-..-.+++..
T Consensus       123 v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~  202 (764)
T KOG1063|consen  123 VSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARL  202 (764)
T ss_pred             EEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhcc
Confidence            9999986555  223333322 22  22222  344455544   446777766544  445556666554333444433


Q ss_pred             C-CccEEEEeCCCCccEEEEEEccCCc---------------------eeE----------EEecccCCeeEEEECCCCC
Q 019349          145 L-NACFLAVPASTTKGSVLVYNVMELH---------------------SHC----------EIDAHQAPLAAIVLSSNGM  192 (342)
Q Consensus       145 ~-~~~~l~~~~~~~~g~i~iwd~~~~~---------------------~~~----------~~~~h~~~v~~i~~s~dg~  192 (342)
                      . +..+||+++  +|..|+||.+.-..                     ...          .+.+|++.|.++.|+|.+.
T Consensus       203 ~~~~~~laS~S--QD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~  280 (764)
T KOG1063|consen  203 GGDDLLLASSS--QDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGL  280 (764)
T ss_pred             CCCcEEEEecC--CceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchh
Confidence            3 244566555  89999999874221                     111          1238999999999999999


Q ss_pred             EEEEEeCCCcEEEEEEcCCC--eeEEEeccCcC---ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCC
Q 019349          193 YIATASEQGTIIRVFLVSEA--TKSYSFRRGTY---PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGR  267 (342)
Q Consensus       193 ~lat~s~dg~~irlwd~~~~--~~~~~~~~~~~---~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~  267 (342)
                      .|+++|.|.++| +|--.+.  --+...+-|..   ....++.-|+|++.   .+++-+..|-.|+|.-+....    -.
T Consensus       281 ~LLSASaDksmi-iW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~---~ii~~g~~Gg~hlWkt~d~~~----w~  352 (764)
T KOG1063|consen  281 DLLSASADKSMI-IWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSN---VIIAHGRTGGFHLWKTKDKTF----WT  352 (764)
T ss_pred             hheecccCcceE-EEecCCccceEEEEEEeecccccccceeeEEEcCCCC---EEEEecccCcEEEEeccCccc----ee
Confidence            999999999987 9976543  33333332221   22367888999998   899999999999998222110    01


Q ss_pred             ccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          268 TSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                      .....+++........|+|.+              .+|+++|.|-+-|+|.-
T Consensus       353 ~~~~iSGH~~~V~dv~W~psG--------------eflLsvs~DQTTRlFa~  390 (764)
T KOG1063|consen  353 QEPVISGHVDGVKDVDWDPSG--------------EFLLSVSLDQTTRLFAR  390 (764)
T ss_pred             eccccccccccceeeeecCCC--------------CEEEEeccccceeeecc
Confidence            112234444445566888877              78999999999988853

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.69  E-value=4.2e-16  Score=127.36  Aligned_cols=283  Identities=11%  Similarity=0.090  Sum_probs=168.3

Q ss_pred             CCCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            2 SNQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         2 ~~~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      +..++.+.|+++.|-.++. |.+|...|+ .+|++++.+-..... .+...+..+..-.+. .++..|     .|.++.+
T Consensus         9 vLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~d-~l~tqg-----Rd~~L~l   81 (323)
T KOG0322|consen    9 VLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPND-SLDTQG-----RDPLLIL   81 (323)
T ss_pred             Eeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCCc-chhhcC-----CCceEEE
Confidence            4557788899999998876 788998886 999998875443333 233333333332322 222333     4889999


Q ss_pred             EECCCCcEEEEEecCCceEEEEEcC-----C---e-EEEEE-C-C--eEEEEECCCCceeeEEeCCC--CCceEEEEee-
Q 019349           80 FNTTTGTALRELNFLTSILAVRLNK-----K---R-LVIVL-R-E--KTYIYDANTLAILDTIDTVP--NLKGLCAFSP-  143 (342)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~-----~---~-~~~~~-d-~--~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~-  143 (342)
                      |++.-+..+..-..  .+.++-|-+     +   . ..... + +  .+.+-|......+...+...  ....+.++.. 
T Consensus        82 w~ia~s~~i~i~Si--~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   82 WTIAYSAFISIHSI--VVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             EEccCcceEEEeee--eccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            99876544322110  111222211     1   0 01111 1 1  12222222221111111111  1112333331 


Q ss_pred             -CCCccEEEEeCCCCccEEEEEEccCCc----------eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC-
Q 019349          144 -SLNACFLAVPASTTKGSVLVYNVMELH----------SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-  211 (342)
Q Consensus       144 -~~~~~~l~~~~~~~~g~i~iwd~~~~~----------~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~-  211 (342)
                       ......++.+|. .+|.|.+||+.++.          .......|+.+|.++.|.+.-..=++|+.+..++ .|.+.. 
T Consensus       160 ~~c~s~~lllaGy-Esghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~-~~Sl~~s  237 (323)
T KOG0322|consen  160 HACGSTFLLLAGY-ESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLV-MYSLNHS  237 (323)
T ss_pred             ccccceEEEEEec-cCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccce-eeeeccc
Confidence             122346677787 79999999998873          3344557999999999987666667777777765 888753 


Q ss_pred             -CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccc
Q 019349          212 -ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH  290 (342)
Q Consensus       212 -~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (342)
                       +.+.........+..|..+.+.||++   .||+++.|+.|+||.-++..+....                     ..|+
T Consensus       238 ~gslq~~~e~~lknpGv~gvrIRpD~K---IlATAGWD~RiRVyswrtl~pLAVL---------------------kyHs  293 (323)
T KOG0322|consen  238 TGSLQIRKEITLKNPGVSGVRIRPDGK---ILATAGWDHRIRVYSWRTLNPLAVL---------------------KYHS  293 (323)
T ss_pred             cCcccccceEEecCCCccceEEccCCc---EEeecccCCcEEEEEeccCCchhhh---------------------hhhh
Confidence             32211100111122377889999999   9999999999999999887764421                     1223


Q ss_pred             eeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          291 VLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       291 ~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                      ..+..++|.++.+.++++|.|++|-.|.+
T Consensus       294 agvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  294 AGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cceeEEEeCCCCchhhhccCCceEEeeec
Confidence            33456667777789999999999999986

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.68  E-value=1.2e-14  Score=124.90  Aligned_cols=200  Identities=14%  Similarity=0.141  Sum_probs=139.5

Q ss_pred             cCCceEEEEEcCCe-EEEEE---CCeEEEEECCCC-------ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEE
Q 019349           93 FLTSILAVRLNKKR-LVIVL---REKTYIYDANTL-------AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (342)
Q Consensus        93 ~~~~v~~i~~~~~~-~~~~~---d~~i~i~d~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i  161 (342)
                      +..+|.+++|.|.. ..+|+   |.+|.||++...       +.+..+..|....++++..+... ..|+++|  .|.+|
T Consensus        80 Ht~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag--~Dn~v  156 (472)
T KOG0303|consen   80 HTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAG--SDNTV  156 (472)
T ss_pred             ccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhcc--CCceE
Confidence            35689999997743 33333   669999999654       23455666666667766666543 3666777  48999


Q ss_pred             EEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349          162 LVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI  241 (342)
Q Consensus       162 ~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~  241 (342)
                      .+||+.+++.+.++. |..-|.++.|+.||.+|+|.+.|.. |||||.++++.+.+-.. +..+.-..+-|-.++.   +
T Consensus       157 ~iWnv~tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKk-vRv~dpr~~~~v~e~~~-heG~k~~Raifl~~g~---i  230 (472)
T KOG0303|consen  157 SIWNVGTGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKK-VRVIDPRRGTVVSEGVA-HEGAKPARAIFLASGK---I  230 (472)
T ss_pred             EEEeccCCceeeecC-CCCeEEEEEeccCCceeeeecccce-eEEEcCCCCcEeeeccc-ccCCCcceeEEeccCc---e
Confidence            999999999888887 9999999999999999999999987 69999999999887643 3333445566777886   4


Q ss_pred             EEEEe---CCCcEEEEecCCCCCCCC---CCCccccccccccccccccccccccceeeeccCCCccccEEE-EEEeCCcE
Q 019349          242 LVATS---SSGSLHVFSPGFAINQRR---GGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVS-VITYNGYF  314 (342)
Q Consensus       242 l~~~s---~dg~i~vwd~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~v  314 (342)
                      +-+|-   ++..+-+||-+.-+++.-   ...+++.   .+|     .|+++.              +.|. +|=+||.|
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGv---l~P-----FyD~dt--------------~ivYl~GKGD~~I  288 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGV---LLP-----FYDPDT--------------SIVYLCGKGDSSI  288 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEeccCCce---EEe-----eecCCC--------------CEEEEEecCCcce
Confidence            44442   356799999776655421   1111111   112     344443              4444 44459999


Q ss_pred             EEEEEecCC
Q 019349          315 VEYIFSINN  323 (342)
Q Consensus       315 ~~~~~~~~~  323 (342)
                      +.|.+..+.
T Consensus       289 RYyEit~d~  297 (472)
T KOG0303|consen  289 RYFEITNEP  297 (472)
T ss_pred             EEEEecCCC
Confidence            999987655

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.67  E-value=7.8e-14  Score=116.51  Aligned_cols=259  Identities=15%  Similarity=0.190  Sum_probs=156.7

Q ss_pred             EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE----EEEEe-cCCceEEEEEc-CC-eEEE--EE-CCeEEEE
Q 019349           49 FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA----LRELN-FLTSILAVRLN-KK-RLVI--VL-REKTYIY  118 (342)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~----~~~~~-~~~~v~~i~~~-~~-~~~~--~~-d~~i~i~  118 (342)
                      +-.+.+.+.+..++.++.       |.+|+|||.+....    ....+ +.+.|..|.|. |. +.++  ++ |+++.||
T Consensus        16 ihdVs~D~~GRRmAtCSs-------Dq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW   88 (361)
T KOG2445|consen   16 IHDVSFDFYGRRMATCSS-------DQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW   88 (361)
T ss_pred             eeeeeecccCceeeeccC-------CCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence            455677888899998875       89999999754432    22333 45688888884 33 2333  34 9999999


Q ss_pred             ECCCC---------ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCcee------EEEe-------
Q 019349          119 DANTL---------AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH------CEID-------  176 (342)
Q Consensus       119 d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~------~~~~-------  176 (342)
                      .=...         ....++........-+.|+|..-+..||+++  .||.++||+....-.+      ..++       
T Consensus        89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~--aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAAS--ADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEec--cCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            76211         1122232222223345667766788899888  6999999997543222      1222       


Q ss_pred             cccCCeeEEEECCC---CCEEEEEeCC-----CcEEEEEEcCCCe----eEEEeccCcCceeEEEEEEecCC-CcccEEE
Q 019349          177 AHQAPLAAIVLSSN---GMYIATASEQ-----GTIIRVFLVSEAT----KSYSFRRGTYPSTIFSLSFGQSM-QFQDILV  243 (342)
Q Consensus       177 ~h~~~v~~i~~s~d---g~~lat~s~d-----g~~irlwd~~~~~----~~~~~~~~~~~~~v~~l~fs~d~-~~~~~l~  243 (342)
                      .|..+..|+.|+|.   ..+||.|+.+     +.+ +||....+.    .+.++.  .+..+|++++|.|+- +--.+||
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~-~Iye~~e~~rKw~kva~L~--d~~dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKV-KIYEYNENGRKWLKVAELP--DHTDPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccce-EEEEecCCcceeeeehhcC--CCCCcceeeeeccccCCceeeEE
Confidence            47788899999974   3679998876     344 588765432    344554  346679999999973 1113899


Q ss_pred             EEeCCCcEEEEecCCCCCCC-CCCCccc-cccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          244 ATSSSGSLHVFSPGFAINQR-RGGRTSS-ILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       244 ~~s~dg~i~vwd~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      +++.|| |+||.++....+- ..+.... .++. ++  +..+-..++|.-.+..+....-+..|.+.+.||.|+.|..+.
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~-l~--v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTD-LP--VEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccc-cc--eEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            999999 9999998532111 0000000 0000 00  011111222222222222233346788899999999998655


Q ss_pred             CC
Q 019349          322 NN  323 (342)
Q Consensus       322 ~~  323 (342)
                      .+
T Consensus       320 ~n  321 (361)
T KOG2445|consen  320 NN  321 (361)
T ss_pred             hh
Confidence            43

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.66  E-value=2.2e-14  Score=118.80  Aligned_cols=241  Identities=14%  Similarity=0.148  Sum_probs=163.3

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcCC--------cEEEEeCCCC---------cEEEE---EeeCCEEEEEEcCCCCeEE
Q 019349            4 QSSSYPVFFVSFNQDNS-GFALSTKD--------GFKIFDSSTG---------RLCYE---RAVGAFSIVEMLYSSSLLA   62 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~-~la~g~~~--------g~~v~d~~~~---------~~~~~---~~~~~~~~~~~~~~~~~~~   62 (342)
                      ..+.++|..++=+|-.. .|++...+        +.-||.+...         +.+-.   .+.+.+.++.|.+++..++
T Consensus        60 ~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~kla  139 (370)
T KOG1007|consen   60 FHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLA  139 (370)
T ss_pred             hcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeE
Confidence            34667888888888554 45655431        2468976432         11111   1236788999999888877


Q ss_pred             EEcCCCCCCCCCCeEEEEECCCCcE-EEEEec------CCceEEEEEcC--Ce--EEEEECCeEEEEECCCCceeeEEeC
Q 019349           63 IVGAGEQPSLSPRRLCLFNTTTGTA-LRELNF------LTSILAVRLNK--KR--LVIVLREKTYIYDANTLAILDTIDT  131 (342)
Q Consensus        63 ~~~~g~~~~~~d~~i~iwd~~~~~~-~~~~~~------~~~v~~i~~~~--~~--~~~~~d~~i~i~d~~~~~~~~~~~~  131 (342)
                      .+.        ++.|.+|++..+.. +..+..      .....+-+|+|  +.  +....|+++..||+++.+....++.
T Consensus       140 sm~--------dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~d  211 (370)
T KOG1007|consen  140 SMD--------DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIED  211 (370)
T ss_pred             Eec--------cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEeCCCcEEEEEccchhhhcchhh
Confidence            664        78999999987765 333321      22455566766  23  3334488999999999887777753


Q ss_pred             CCCCceEEEEeeCCCccE-EEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEE
Q 019349          132 VPNLKGLCAFSPSLNACF-LAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFL  208 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~-l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd  208 (342)
                       .+...+..+.++|+.++ |+++|  .||.|+|||.+..+ ++..+.+|...|.++.|+|. .++|+|||.|..++ +|.
T Consensus       212 -AHgq~vrdlDfNpnkq~~lvt~g--DdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~-Lsc  287 (370)
T KOG1007|consen  212 -AHGQRVRDLDFNPNKQHILVTCG--DDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVN-LSC  287 (370)
T ss_pred             -hhcceeeeccCCCCceEEEEEcC--CCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeE-EEe
Confidence             23345667778887655 55555  69999999998654 78999999999999999994 47889999998865 886


Q ss_pred             cCCCe---------------------eEEEecc------CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          209 VSEAT---------------------KSYSFRR------GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       209 ~~~~~---------------------~~~~~~~------~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      ..+-.                     +.+.++.      ..+...|++++||.-..-  ++|+-|-||.+-|=.+..
T Consensus       288 a~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPW--iFASLSYDGRviIs~V~r  362 (370)
T KOG1007|consen  288 ASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPW--IFASLSYDGRVIISSVPR  362 (370)
T ss_pred             ccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCe--eEEEeccCceEEeecCCh
Confidence            53211                     0001111      112345999999988772  566669999998876653

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=6.8e-14  Score=113.34  Aligned_cols=162  Identities=14%  Similarity=0.077  Sum_probs=116.3

Q ss_pred             EecCCceEEEEEcCCeEEEEECCeEEEEECCCC------ceeeEEeCCCC-----CceEEEEeeCCCccEEEEeCCCCcc
Q 019349           91 LNFLTSILAVRLNKKRLVIVLREKTYIYDANTL------AILDTIDTVPN-----LKGLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        91 ~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~------~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      -.+..+|+.++|+.+.++.+.||.|+=|..+..      +.+.+...+.+     ...+.++..+|...-++++|  .|+
T Consensus        59 qahdgpiy~~~f~d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag--GD~  136 (325)
T KOG0649|consen   59 QAHDGPIYYLAFHDDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG--GDG  136 (325)
T ss_pred             cccCCCeeeeeeehhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec--CCe
Confidence            345679999999999999999999999977532      11111111111     12355666666555666666  489


Q ss_pred             EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc--------eeEEEEE
Q 019349          160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP--------STIFSLS  231 (342)
Q Consensus       160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~--------~~v~~l~  231 (342)
                      .+.-||+++++..+++++|++-|.+++--.....+.||++||+ +|+||.++++.+..+..-.++        .-|-+++
T Consensus       137 ~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGt-vRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala  215 (325)
T KOG0649|consen  137 VIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGT-VRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA  215 (325)
T ss_pred             EEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCcc-EEEEeccccceeEEeccccChhhcCcccCceeEEEe
Confidence            9999999999999999999999999988455567999999998 599999999987766422111        1255555


Q ss_pred             EecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          232 FGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      -  +..   +|++|+. ..+.+|.++..+.
T Consensus       216 ~--~ed---WlvCGgG-p~lslwhLrsse~  239 (325)
T KOG0649|consen  216 V--NED---WLVCGGG-PKLSLWHLRSSES  239 (325)
T ss_pred             c--cCc---eEEecCC-CceeEEeccCCCc
Confidence            4  444   7877664 4789999876543

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.65  E-value=1.7e-14  Score=121.43  Aligned_cols=161  Identities=17%  Similarity=0.219  Sum_probs=124.0

Q ss_pred             CCceEEEEEcC-----CeEEE--EECCeEEEEECCC-C--ceeeEEeCCCCCc--eEEEEeeCCC--ccEEEEeCCCCcc
Q 019349           94 LTSILAVRLNK-----KRLVI--VLREKTYIYDANT-L--AILDTIDTVPNLK--GLCAFSPSLN--ACFLAVPASTTKG  159 (342)
Q Consensus        94 ~~~v~~i~~~~-----~~~~~--~~d~~i~i~d~~~-~--~~~~~~~~~~~~~--~~~~~~~~~~--~~~l~~~~~~~~g  159 (342)
                      ..+|.+++|+.     +..++  ++.+.+.+|.... +  +.++.+.....+.  ..++.+.+.+  ..++|.+|  .-|
T Consensus        38 ~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G--~~G  115 (385)
T KOG1034|consen   38 NKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGG--YLG  115 (385)
T ss_pred             CCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeec--cee
Confidence            34778888762     22333  3367899998853 3  4555554433333  3344444332  46888888  579


Q ss_pred             EEEEEEccCCceeEEEecccCCeeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCeeEEEecc-CcCceeEEEEEEecCCC
Q 019349          160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSFRR-GTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~irlwd~~~~~~~~~~~~-~~~~~~v~~l~fs~d~~  237 (342)
                      .|+|.|+.+++....+.+|...|+.|.|.|+. ++|++||.|.+ ||+|++++..++..|-. ..|..+|.++.|++++.
T Consensus       116 vIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~s-vRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd  194 (385)
T KOG1034|consen  116 VIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHS-VRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGD  194 (385)
T ss_pred             EEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCce-EEEEeccCCeEEEEecccccccCcEEEEEEcCCCC
Confidence            99999999999999999999999999999965 78999999976 69999999999988843 12456799999999999


Q ss_pred             cccEEEEEeCCCcEEEEecCCCC
Q 019349          238 FQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       238 ~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                         +|++++.|.++++|++..++
T Consensus       195 ---~i~ScGmDhslk~W~l~~~~  214 (385)
T KOG1034|consen  195 ---RIASCGMDHSLKLWRLNVKE  214 (385)
T ss_pred             ---eeeccCCcceEEEEecChhH
Confidence               99999999999999998554

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=1.1e-14  Score=123.17  Aligned_cols=185  Identities=15%  Similarity=0.185  Sum_probs=129.8

Q ss_pred             CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEE--Eeccc-CCeeEEEEC
Q 019349          112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE--IDAHQ-APLAAIVLS  188 (342)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~--~~~h~-~~v~~i~~s  188 (342)
                      .+.|++||..+++.+..+..++.....+.+........+.+++  .||+|++||++.......  +.+|. .+..|++.+
T Consensus        49 ngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~s--sDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~n  126 (376)
T KOG1188|consen   49 NGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCS--SDGTVRLWDIRSQAESARISWTQQSGTPFICLDLN  126 (376)
T ss_pred             CCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEec--cCCeEEEEEeecchhhhheeccCCCCCcceEeecc
Confidence            7899999999999999998776655555555422223455555  689999999998765443  44565 578888888


Q ss_pred             CCCCEEEEEeC----CCcEEEEEEcCCCee-EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          189 SNGMYIATASE----QGTIIRVFLVSEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       189 ~dg~~lat~s~----dg~~irlwd~~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      -.++.++.|.+    |-. +.+||++..+. +..+.. .|...|+++.|+|...  |+|++||.||-|.|||++...+..
T Consensus       127 ck~~ii~~GtE~~~s~A~-v~lwDvR~~qq~l~~~~e-SH~DDVT~lrFHP~~p--nlLlSGSvDGLvnlfD~~~d~EeD  202 (376)
T KOG1188|consen  127 CKKNIIACGTELTRSDAS-VVLWDVRSEQQLLRQLNE-SHNDDVTQLRFHPSDP--NLLLSGSVDGLVNLFDTKKDNEED  202 (376)
T ss_pred             CcCCeEEeccccccCceE-EEEEEeccccchhhhhhh-hccCcceeEEecCCCC--CeEEeecccceEEeeecCCCcchh
Confidence            78899998864    333 46999998776 555533 3455699999999987  699999999999999998774422


Q ss_pred             CCCCcccccccccc--ccc-cccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          264 RGGRTSSILGSILP--ESV-NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       264 ~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      .       +-....  ..+ .+-|..             ++-++|++.+..+.+.+|.+...
T Consensus       203 a-------L~~viN~~sSI~~igw~~-------------~~ykrI~clTH~Etf~~~ele~~  244 (376)
T KOG1188|consen  203 A-------LLHVINHGSSIHLIGWLS-------------KKYKRIMCLTHMETFAIYELEDG  244 (376)
T ss_pred             h-------HHHhhcccceeeeeeeec-------------CCcceEEEEEccCceeEEEccCC
Confidence            1       000000  000 011222             22257999999999999998643

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.64  E-value=6.5e-15  Score=123.30  Aligned_cols=162  Identities=19%  Similarity=0.206  Sum_probs=119.1

Q ss_pred             EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEE
Q 019349          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS  217 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~  217 (342)
                      ..++.+++.|.+||.+.  .+|.|.|||+.+...-+.+.+|..||.+++||+||++|+|+|.|.. |++||+..|.++++
T Consensus        26 a~~~~Fs~~G~~lAvGc--~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~s-i~lwDl~~gs~l~r  102 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGC--ANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWS-IKLWDLLKGSPLKR  102 (405)
T ss_pred             cceEEeccCcceeeeec--cCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCce-eEEEeccCCCceeE
Confidence            44556677788999887  6999999999999888889999999999999999999999999987 57999999999998


Q ss_pred             eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccC
Q 019349          218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFP  297 (342)
Q Consensus       218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (342)
                      ++   .+++|+.+.|+|...  |..++.-.+..-.+-++..++.        .    ++|..-..--+     .......
T Consensus       103 ir---f~spv~~~q~hp~k~--n~~va~~~~~sp~vi~~s~~~h--------~----~Lp~d~d~dln-----~sas~~~  160 (405)
T KOG1273|consen  103 IR---FDSPVWGAQWHPRKR--NKCVATIMEESPVVIDFSDPKH--------S----VLPKDDDGDLN-----SSASHGV  160 (405)
T ss_pred             EE---ccCccceeeeccccC--CeEEEEEecCCcEEEEecCCce--------e----eccCCCccccc-----ccccccc
Confidence            85   356799999999776  3555555555556666554322        1    11110000000     0001123


Q ss_pred             CCccccEEEEEEeCCcEEEEEEecCCC
Q 019349          298 AGVKRASVSVITYNGYFVEYIFSINNC  324 (342)
Q Consensus       298 ~~~~~~~l~~~~~dg~v~~~~~~~~~~  324 (342)
                      |.+++++|++|.+-|.+.+|+..+-++
T Consensus       161 fdr~g~yIitGtsKGkllv~~a~t~e~  187 (405)
T KOG1273|consen  161 FDRRGKYIITGTSKGKLLVYDAETLEC  187 (405)
T ss_pred             ccCCCCEEEEecCcceEEEEecchhee
Confidence            466779999999999999998876543

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.64  E-value=7.6e-15  Score=133.06  Aligned_cols=161  Identities=16%  Similarity=0.182  Sum_probs=124.8

Q ss_pred             CCceEEEEEcCCeEEEEE---CCeEEEEECCCC-cee-eEEeCCCCCceEEEEeeCC-CccEEEEeCCCCccEEEEEEcc
Q 019349           94 LTSILAVRLNKKRLVIVL---REKTYIYDANTL-AIL-DTIDTVPNLKGLCAFSPSL-NACFLAVPASTTKGSVLVYNVM  167 (342)
Q Consensus        94 ~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~-~~~-~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~g~i~iwd~~  167 (342)
                      ++...+++.+..+.++-.   .|.|-||+++.. ++- ..+..-.|...+..+.++| |...||+++  .||.|++|.+.
T Consensus       581 PgEsnGfcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~--ddg~i~lWr~~  658 (1012)
T KOG1445|consen  581 PGESNGFCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVAT--DDGQINLWRLT  658 (1012)
T ss_pred             CCccCceeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecc--cCceEEEEEec
Confidence            345556666666666543   679999999764 322 1233444556677888877 556788887  69999999985


Q ss_pred             CC-------ceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcc
Q 019349          168 EL-------HSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ  239 (342)
Q Consensus       168 ~~-------~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~  239 (342)
                      .+       .+...+.+|...|.++.|+| -.+.||+++.|-+ |++||+++++....+..+  ...|.+++|||||+  
T Consensus       659 a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~T-i~lWDl~~~~~~~~l~gH--tdqIf~~AWSpdGr--  733 (1012)
T KOG1445|consen  659 ANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDST-IELWDLANAKLYSRLVGH--TDQIFGIAWSPDGR--  733 (1012)
T ss_pred             cCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccce-eeeeehhhhhhhheeccC--cCceeEEEECCCCc--
Confidence            43       34567889999999999999 4578999999987 699999999988888654  45699999999999  


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCC
Q 019349          240 DILVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       240 ~~l~~~s~dg~i~vwd~~~~~~~  262 (342)
                       .+|+.+.||+|+||+-+....+
T Consensus       734 -~~AtVcKDg~~rVy~Prs~e~p  755 (1012)
T KOG1445|consen  734 -RIATVCKDGTLRVYEPRSREQP  755 (1012)
T ss_pred             -ceeeeecCceEEEeCCCCCCCc
Confidence             9999999999999998765543

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=6.8e-14  Score=120.35  Aligned_cols=298  Identities=10%  Similarity=0.060  Sum_probs=183.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC------c-EEEEEeeCCEEEEEEcCCC-CeEEEEcCCCCCCCCCC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG------R-LCYERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~------~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~   75 (342)
                      .|.+-|+++.|+.++++||+|+++. .++|+.+..      + +....+.+.-.+.++.++. +..++.|+      .++
T Consensus        54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~------~~~  127 (609)
T KOG4227|consen   54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGE------RWG  127 (609)
T ss_pred             hhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCC------Ccc
Confidence            4567799999999999999999987 599997532      1 1122222323334444443 44444444      689


Q ss_pred             eEEEEECCCCcEEEEEecCC---ceEEEEEcCC--eEEEEE-CCeEEEEECCCCce-eeEEeCCCCCceEEEEeeCCCc-
Q 019349           76 RLCLFNTTTGTALRELNFLT---SILAVRLNKK--RLVIVL-REKTYIYDANTLAI-LDTIDTVPNLKGLCAFSPSLNA-  147 (342)
Q Consensus        76 ~i~iwd~~~~~~~~~~~~~~---~v~~i~~~~~--~~~~~~-d~~i~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-  147 (342)
                      +|++.|+++.+.+..+.+..   .|+.+..+|.  .+++.+ ++.|.+||.+..+. ..-+-....+......-++|.. 
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence            99999999999888777654   8999888774  344444 78999999976542 1111111112233344445543 


Q ss_pred             cEEEEeCCCCccEEEEEEccCCce-eE------EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee-EEEec
Q 019349          148 CFLAVPASTTKGSVLVYNVMELHS-HC------EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-SYSFR  219 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~~~~-~~------~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~-~~~~~  219 (342)
                      .+|++..  ..|-+.+||.+..+. +.      .++.....-..+.|+|+|+.|.+--..---+ +||+.+..+ +..+.
T Consensus       208 ~Li~~~~--~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~-~~D~~S~R~~V~k~D  284 (609)
T KOG4227|consen  208 ALILVNS--ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPL-YFDFISQRCFVLKSD  284 (609)
T ss_pred             eeEEecc--ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCE-EeeeecccceeEecc
Confidence            3455555  467799999876542 21      1222122336678999999888754332223 788876443 22332


Q ss_pred             c---Cc-CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccc---ccccc-c--ccccccccc
Q 019349          220 R---GT-YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS---ILPES-V--NEVLDPADH  289 (342)
Q Consensus       220 ~---~~-~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~---~~~~~-~--~~~~~~~~~  289 (342)
                      .   +. ....+.+++|-.|-.    +++||.+-.|++|.+.......-..    .++-   ..|.. +  ..+.-..+|
T Consensus       285 ~N~~GY~N~~T~KS~~F~~D~~----v~tGSD~~~i~~WklP~~~ds~G~~----~IG~~~~~~~~~~~i~~~~~VLrGH  356 (609)
T KOG4227|consen  285 HNPNGYCNIKTIKSMTFIDDYT----VATGSDHWGIHIWKLPRANDSYGFT----QIGHDEEEMPSEIFIEKELTVLRGH  356 (609)
T ss_pred             CCCCcceeeeeeeeeeeeccee----eeccCcccceEEEecCCCccccCcc----ccCcchhhCchhheecceeEEEecc
Confidence            1   10 123478899987764    9999999999999987654321100    0110   01110 0  112233455


Q ss_pred             ceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          290 HVLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       290 ~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                      +-....+.|.+..+.|++.+-...+++|.-
T Consensus       357 RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  357 RSVPNQVRFSQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             cccccceeecCCcceEeccchhhheecccc
Confidence            556667788888788888888999999963

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=7.8e-14  Score=125.78  Aligned_cols=245  Identities=16%  Similarity=0.188  Sum_probs=168.9

Q ss_pred             EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC----eEEEEECCeE
Q 019349           40 LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK----RLVIVLREKT  115 (342)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~----~~~~~~d~~i  115 (342)
                      ++|..|.+.+..+...+.+.+++..+       .|++|+||.+.+|+|+..+.+.+.|.+|+|+|.    .++++.++.+
T Consensus       394 lvyrGHtg~Vr~iSvdp~G~wlasGs-------dDGtvriWEi~TgRcvr~~~~d~~I~~vaw~P~~~~~vLAvA~~~~~  466 (733)
T KOG0650|consen  394 LVYRGHTGLVRSISVDPSGEWLASGS-------DDGTVRIWEIATGRCVRTVQFDSEIRSVAWNPLSDLCVLAVAVGECV  466 (733)
T ss_pred             eeEeccCCeEEEEEecCCcceeeecC-------CCCcEEEEEeecceEEEEEeecceeEEEEecCCCCceeEEEEecCce
Confidence            34555666677777777666655433       599999999999999999999999999999875    2334445555


Q ss_pred             EEEECCCC---------ceeeEE-------------eC-------------CCCCceEEEEeeCCCccEEEEeCC-CCcc
Q 019349          116 YIYDANTL---------AILDTI-------------DT-------------VPNLKGLCAFSPSLNACFLAVPAS-TTKG  159 (342)
Q Consensus       116 ~i~d~~~~---------~~~~~~-------------~~-------------~~~~~~~~~~~~~~~~~~l~~~~~-~~~g  159 (342)
                      .|-+-.-|         .++...             ..             -.++..+..+.++..|.+|++... ....
T Consensus       467 ~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~  546 (733)
T KOG0650|consen  467 LIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNK  546 (733)
T ss_pred             EEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcc
Confidence            55443211         011000             00             011223446677778888887642 1346


Q ss_pred             EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcc
Q 019349          160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ  239 (342)
Q Consensus       160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~  239 (342)
                      .|.|+++...+....|.--.+.|.++.|+|.-.+|..++...  +|+||+.....++++..+  ...|.+|+.+|.|.  
T Consensus       547 ~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~--vRiYdL~kqelvKkL~tg--~kwiS~msihp~GD--  620 (733)
T KOG0650|consen  547 SVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRS--VRIYDLSKQELVKKLLTG--SKWISSMSIHPNGD--  620 (733)
T ss_pred             eEEEEecccccccCchhhcCCceeEEEecCCCceEEEEeccc--eEEEehhHHHHHHHHhcC--CeeeeeeeecCCCC--
Confidence            799999987776666655567799999999999999998763  589999887777666544  34589999999987  


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349          240 DILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       240 ~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                       -|+.++.|+.+..||++-...+-+.      +. +             |...+..+++.++-+.+++++.||.+++|-
T Consensus       621 -nli~gs~d~k~~WfDldlsskPyk~------lr-~-------------H~~avr~Va~H~ryPLfas~sdDgtv~Vfh  678 (733)
T KOG0650|consen  621 -NLILGSYDKKMCWFDLDLSSKPYKT------LR-L-------------HEKAVRSVAFHKRYPLFASGSDDGTVIVFH  678 (733)
T ss_pred             -eEEEecCCCeeEEEEcccCcchhHH------hh-h-------------hhhhhhhhhhccccceeeeecCCCcEEEEe
Confidence             7999999999999999876543210      00 0             111223445556667788888899999885

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=6.3e-14  Score=133.71  Aligned_cols=239  Identities=15%  Similarity=0.228  Sum_probs=160.4

Q ss_pred             CCCCeEEEEEcC--CCCEEEEEcCCcE-EEEeC-CCC----cEEEEE---e------eCCEEEEEEcCCCCeEEEEcCCC
Q 019349            6 SSYPVFFVSFNQ--DNSGFALSTKDGF-KIFDS-STG----RLCYER---A------VGAFSIVEMLYSSSLLAIVGAGE   68 (342)
Q Consensus         6 ~~~~V~~l~fs~--d~~~la~g~~~g~-~v~d~-~~~----~~~~~~---~------~~~~~~~~~~~~~~~~~~~~~g~   68 (342)
                      ....|+.+.+-.  |..+|.+|+.||+ |||+- .+.    +++-..   .      .+.-.+++|...+..+.+.|+  
T Consensus      1108 ~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-- 1185 (1387)
T KOG1517|consen 1108 PDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-- 1185 (1387)
T ss_pred             CCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC--
Confidence            456788888764  4456888988885 99963 222    222111   0      011245666666666655443  


Q ss_pred             CCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEc--CCeEEEEE--CCeEEEEECCCC---ceeeEEeCCCCCceEE
Q 019349           69 QPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLN--KKRLVIVL--REKTYIYDANTL---AILDTIDTVPNLKGLC  139 (342)
Q Consensus        69 ~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~--~~~~~~~~--d~~i~i~d~~~~---~~~~~~~~~~~~~~~~  139 (342)
                           -+.|+|||+.+.+....+...+  -|+++.-+  ...+++++  ||.+++||.+..   ..+...+.|.....++
T Consensus      1186 -----~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv 1260 (1387)
T KOG1517|consen 1186 -----VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIV 1260 (1387)
T ss_pred             -----eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccce
Confidence                 6899999999888888876654  45555432  22455555  999999999753   2445555555554566


Q ss_pred             EEeeCCCccE-EEEeCCCCccEEEEEEccCCce--eEEEeccc--C-CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe
Q 019349          140 AFSPSLNACF-LAVPASTTKGSVLVYNVMELHS--HCEIDAHQ--A-PLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  213 (342)
Q Consensus       140 ~~~~~~~~~~-l~~~~~~~~g~i~iwd~~~~~~--~~~~~~h~--~-~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~  213 (342)
                      -++..+++.. |++++  .+|.|++||++....  ..++..|.  + .++++..++....+|+|+. + .|+||++. |+
T Consensus      1261 ~~slq~~G~~elvSgs--~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q-~ikIy~~~-G~ 1335 (1387)
T KOG1517|consen 1261 HLSLQRQGLGELVSGS--QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-Q-LIKIYSLS-GE 1335 (1387)
T ss_pred             eEEeecCCCcceeeec--cCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-c-eEEEEecC-hh
Confidence            6665554433 65555  799999999987422  23333443  3 5999999999999999997 4 47999985 55


Q ss_pred             eEEEecc-----CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          214 KSYSFRR-----GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       214 ~~~~~~~-----~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      ++..++.     +.....+.||+|+|-.-   +||+|+.|.+|.||....+
T Consensus      1336 ~l~~~k~n~~F~~q~~gs~scL~FHP~~~---llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1336 QLNIIKYNPGFMGQRIGSVSCLAFHPHRL---LLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             hhcccccCcccccCcCCCcceeeecchhH---hhhhccCCceEEEeecCCc
Confidence            5554432     12234589999999988   8999999999999987654

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.1e-12  Score=123.19  Aligned_cols=288  Identities=14%  Similarity=0.152  Sum_probs=184.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEe-CC-CC-c---EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            9 PVFFVSFNQDNSGFALSTKDG-FKIFD-SS-TG-R---LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g-~~v~d-~~-~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .++|.+++|.++++|+|..+| +.+|. .. .. .   .++..|...+....+..++.++...|       ..+.+.+|.
T Consensus       207 ~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG-------~E~VLv~Wq  279 (792)
T KOG1963|consen  207 NITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGG-------REGVLVLWQ  279 (792)
T ss_pred             cceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecc-------cceEEEEEe
Confidence            478999999999999998888 78885 33 11 1   12344555677677766666654433       478999999


Q ss_pred             CCCCcEEEEEecCCceEEEEEcCCeEEEE---ECCeEEEEECCCCceeeEEeCCCCC--------c-eEEEEeeCCCccE
Q 019349           82 TTTGTALRELNFLTSILAVRLNKKRLVIV---LREKTYIYDANTLAILDTIDTVPNL--------K-GLCAFSPSLNACF  149 (342)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~  149 (342)
                      +.+++...--+..++|..+.++++.-..+   .|++|.+-...+.....++.....+        . -...++.+|.-..
T Consensus       280 ~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~  359 (792)
T KOG1963|consen  280 LETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS  359 (792)
T ss_pred             ecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence            99998544446678999999998854443   3999999988776555554322111        1 1234455554456


Q ss_pred             EEEeCCCCccEEEEEEccCCceeEEEe-----------cccCCeeEEEECCCCCEEEEEeC--------CCc-EEEEEEc
Q 019349          150 LAVPASTTKGSVLVYNVMELHSHCEID-----------AHQAPLAAIVLSSNGMYIATASE--------QGT-IIRVFLV  209 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~~~~~~~~-----------~h~~~v~~i~~s~dg~~lat~s~--------dg~-~irlwd~  209 (342)
                      ++..+  ..|.|++||+-+.+.+..+.           .+.-.+++++.+..|++++|.-.        ||. .+|+|-.
T Consensus       360 ~vln~--~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~  437 (792)
T KOG1963|consen  360 LVLNG--HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQY  437 (792)
T ss_pred             eeecC--CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEE
Confidence            77777  57999999998777665443           12345888999999999999732        332 2578876


Q ss_pred             CCCeeE----EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccc--cccccccccccc
Q 019349          210 SEATKS----YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSI--LGSILPESVNEV  283 (342)
Q Consensus       210 ~~~~~~----~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  283 (342)
                      .....-    .++...+..+.+..+.++|...  +..++++.||.++||-+...++..+....+.+  ++.|        
T Consensus       438 n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs--~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy--------  507 (792)
T KOG1963|consen  438 NPNSKTFILNTKINNPHGNAFVATIFLNPTRS--VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSY--------  507 (792)
T ss_pred             cCCcceeEEEEEEecCCCceeEEEEEecCccc--ceeEEeccCCeEEEEEEecccccCcCccceEEeeeecc--------
Confidence            544322    2222222233333333444333  37999999999999999776654432211111  1111        


Q ss_pred             ccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          284 LDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                           ++.......|..+ ..+++++.|+.|.+|+.+.
T Consensus       508 -----~k~~i~a~~fs~d-Gslla~s~~~~Itiwd~~~  539 (792)
T KOG1963|consen  508 -----HKTPITALCFSQD-GSLLAVSFDDTITIWDYDT  539 (792)
T ss_pred             -----ccCcccchhhcCC-CcEEEEecCCEEEEecCCC
Confidence                 1111122233333 4899999999999998765

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.60  E-value=1.2e-12  Score=111.97  Aligned_cols=215  Identities=13%  Similarity=0.127  Sum_probs=150.9

Q ss_pred             eEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           76 RLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        76 ~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      .-+++............ ....|..+-|+...++++.   .+.+++++++.+..+..+..+   ..+.++-.+-+  .|+
T Consensus        27 Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSSSLvaiV~~~qpr~Lkv~~~Kk~~~ICe~~fp---t~IL~VrmNr~--RLv  101 (391)
T KOG2110|consen   27 GYKIFSCSPFEKCFSKDTEGVSIVEMLFSSSLVAIVSIKQPRKLKVVHFKKKTTICEIFFP---TSILAVRMNRK--RLV  101 (391)
T ss_pred             ceeEEecCchHHhhcccCCCeEEEEeecccceeEEEecCCCceEEEEEcccCceEEEEecC---CceEEEEEccc--eEE
Confidence            34666654433221111 2235677778888888877   237999999888777776543   34666665433  444


Q ss_pred             EeCCCCccEEEEEEccCCceeEEEe---cccCCeeEEEECCCCCEEEEEeC--CCcEEEEEEcCCCeeEEEeccCcCcee
Q 019349          152 VPASTTKGSVLVYNVMELHSHCEID---AHQAPLAAIVLSSNGMYIATASE--QGTIIRVFLVSEATKSYSFRRGTYPST  226 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~~~~~~~~---~h~~~v~~i~~s~dg~~lat~s~--dg~~irlwd~~~~~~~~~~~~~~~~~~  226 (342)
                      ++-   .+.|.|||+++.+.+.++.   .|...+.++++++++.+||--+.  -|.+ .|||+.+-+.+..+.  .|.++
T Consensus       102 V~L---ee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV-~l~d~~nl~~v~~I~--aH~~~  175 (391)
T KOG2110|consen  102 VCL---EESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV-VLFDTINLQPVNTIN--AHKGP  175 (391)
T ss_pred             EEE---cccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE-EEEEcccceeeeEEE--ecCCc
Confidence            443   3559999999999888775   45666777777778889987542  3665 699999999888886  35678


Q ss_pred             EEEEEEecCCCcccEEEEEeCCCc-EEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEE
Q 019349          227 IFSLSFGQSMQFQDILVATSSSGS-LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  305 (342)
Q Consensus       227 v~~l~fs~d~~~~~~l~~~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      +-+|+|+|+|.   +||++|+.|| ||||.+..+.......      .+..+             ...+.++|.++...|
T Consensus       176 lAalafs~~G~---llATASeKGTVIRVf~v~~G~kl~eFR------RG~~~-------------~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  176 LAALAFSPDGT---LLATASEKGTVIRVFSVPEGQKLYEFR------RGTYP-------------VSIYSLSFSPDSQFL  233 (391)
T ss_pred             eeEEEECCCCC---EEEEeccCceEEEEEEcCCccEeeeee------CCcee-------------eEEEEEEECCCCCeE
Confidence            99999999999   9999999999 7999998776543211      11111             122344556666899


Q ss_pred             EEEEeCCcEEEEEEecCC
Q 019349          306 SVITYNGYFVEYIFSINN  323 (342)
Q Consensus       306 ~~~~~dg~v~~~~~~~~~  323 (342)
                      .+.|..++|++|.++...
T Consensus       234 ~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  234 AASSNTETVHIFKLEKVS  251 (391)
T ss_pred             EEecCCCeEEEEEecccc
Confidence            999999999999997654

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.60  E-value=8.3e-14  Score=124.17  Aligned_cols=262  Identities=14%  Similarity=0.134  Sum_probs=171.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEE-eCCCCcEE-EEEeeCCEE---EEEEc-----CCCCeEEEEcCCCCCCCC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIF-DSSTGRLC-YERAVGAFS---IVEML-----YSSSLLAIVGAGEQPSLS   73 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g~~v~-d~~~~~~~-~~~~~~~~~---~~~~~-----~~~~~~~~~~~g~~~~~~   73 (342)
                      +.+..-|.|+.|+.....+.+++++-+.+| |+.+.... ......-+.   ...-.     ..++.+++++       +
T Consensus        11 ~r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s-------~   83 (737)
T KOG1524|consen   11 NRNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICS-------N   83 (737)
T ss_pred             cccceeEEeecccccceEEEeccCceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEc-------C
Confidence            355667889999998888888888877554 55433211 111100011   00000     0123344554       4


Q ss_pred             CCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccE
Q 019349           74 PRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
                      |+++.+.+ +.++....+. +.+.+.+-.|++++..+.+   ||.|++|.-..+  +++. ...+...+.|+++.|+...
T Consensus        84 DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM--LRSt-l~Q~~~~v~c~~W~p~S~~  159 (737)
T KOG1524|consen   84 DGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM--LRST-VVQNEESIRCARWAPNSNS  159 (737)
T ss_pred             CceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch--HHHH-HhhcCceeEEEEECCCCCc
Confidence            88888876 4455444444 4457888899998654443   899999985432  2221 1123456888888888777


Q ss_pred             EEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349          150 LAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  229 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~  229 (342)
                      ++++.   .+.+.|=.+.....+..+++|.+-|.++.|++..+.+++|++|-+ .++||.. |+.++.-.  .+..+|++
T Consensus       160 vl~c~---g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~k-fKvWD~~-G~~Lf~S~--~~ey~ITS  232 (737)
T KOG1524|consen  160 IVFCQ---GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFR-FKIWDAQ-GANLFTSA--AEEYAITS  232 (737)
T ss_pred             eEEec---CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCcee-EEeeccc-CcccccCC--hhccceee
Confidence            77764   367888777777677789999999999999999999999999988 5999975 66655443  34556999


Q ss_pred             EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349          230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  309 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (342)
                      ++|+|| +   .++.+|. ++.+   ++.+   +        .+    ..+.-.|++++              .++..++
T Consensus       233 va~npd-~---~~~v~S~-nt~R---~~~p---~--------~G----SifnlsWS~DG--------------TQ~a~gt  275 (737)
T KOG1524|consen  233 VAFNPE-K---DYLLWSY-NTAR---FSSP---R--------VG----SIFNLSWSADG--------------TQATCGT  275 (737)
T ss_pred             eeeccc-c---ceeeeee-eeee---ecCC---C--------cc----ceEEEEEcCCC--------------ceeeccc
Confidence            999999 5   5666664 3555   2211   1        12    23455788877              7899999


Q ss_pred             eCCcEE-EEEEe
Q 019349          310 YNGYFV-EYIFS  320 (342)
Q Consensus       310 ~dg~v~-~~~~~  320 (342)
                      +.|.+. .|.++
T Consensus       276 ~~G~v~~A~~ie  287 (737)
T KOG1524|consen  276 STGQLIVAYAIE  287 (737)
T ss_pred             cCceEEEeeeeh
Confidence            999854 34443

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.60  E-value=5.9e-12  Score=115.13  Aligned_cols=236  Identities=16%  Similarity=0.238  Sum_probs=161.5

Q ss_pred             eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc-EEEEEec-CC-ceEEEEE-cCCeE--EEEE---CCeEE
Q 019349           46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT-ALRELNF-LT-SILAVRL-NKKRL--VIVL---REKTY  116 (342)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~-~~~~~~~-~~-~v~~i~~-~~~~~--~~~~---d~~i~  116 (342)
                      ...+..+.+......+...+       .++.+.+|+...+. .+..+.. .. .+..+.. .++..  +...   ++.++
T Consensus        65 ~~~i~~~~~~~~~~~~~~~~-------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  137 (466)
T COG2319          65 EDSITSIAFSPDGELLLSGS-------SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK  137 (466)
T ss_pred             cceEEEEEECCCCcEEEEec-------CCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence            34555555555555555554       38999999998886 5555554 22 5666665 44433  2221   67999


Q ss_pred             EEECCC-CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCC-EE
Q 019349          117 IYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGM-YI  194 (342)
Q Consensus       117 i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~-~l  194 (342)
                      +|++.. ......+..+..  .+.+++..+++..++.++. .++.+++|++..++.+..+..|...|.+++|+|++. .+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  214 (466)
T COG2319         138 LWDLSTPGKLIRTLEGHSE--SVTSLAFSPDGKLLASGSS-LDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLI  214 (466)
T ss_pred             EEEecCCCeEEEEEecCcc--cEEEEEECCCCCEEEecCC-CCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEE
Confidence            999988 666666666544  3446677777777777653 389999999999888899999999999999999998 66


Q ss_pred             EEEeCCCcEEEEEEcCCCeeEE-EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC-CCCCCCccccc
Q 019349          195 ATASEQGTIIRVFLVSEATKSY-SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN-QRRGGRTSSIL  272 (342)
Q Consensus       195 at~s~dg~~irlwd~~~~~~~~-~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~-~~~~~~~~~~~  272 (342)
                      ++++.|+.+ ++||...+..+. .+..+.  ... ...|+|++.   ++++++.|+.+++|++..... ...       +
T Consensus       215 ~~~~~d~~i-~~wd~~~~~~~~~~~~~~~--~~~-~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~-------~  280 (466)
T COG2319         215 ASGSSDGTI-RLWDLSTGKLLRSTLSGHS--DSV-VSSFSPDGS---LLASGSSDGTIRLWDLRSSSSLLRT-------L  280 (466)
T ss_pred             EEecCCCcE-EEEECCCCcEEeeecCCCC--cce-eEeECCCCC---EEEEecCCCcEEEeeecCCCcEEEE-------E
Confidence            666899985 799998787776 454332  222 228999997   899999999999999886553 110       0


Q ss_pred             cccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          273 GSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                      ...........|.              +....+++++.|+.+.+|++
T Consensus       281 ~~~~~~v~~~~~~--------------~~~~~~~~~~~d~~~~~~~~  313 (466)
T COG2319         281 SGHSSSVLSVAFS--------------PDGKLLASGSSDGTVRLWDL  313 (466)
T ss_pred             ecCCccEEEEEEC--------------CCCCEEEEeeCCCcEEEEEc
Confidence            0000011111233              33367888888988999944

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.59  E-value=6.8e-13  Score=110.07  Aligned_cols=176  Identities=9%  Similarity=0.211  Sum_probs=126.4

Q ss_pred             CeEEEEECCCCc---------EEEEEe--cCCceEEEEEcCCeEEEEE--CCeEEEEECCCCce-eeEEeCCCCC---ce
Q 019349           75 RRLCLFNTTTGT---------ALRELN--FLTSILAVRLNKKRLVIVL--REKTYIYDANTLAI-LDTIDTVPNL---KG  137 (342)
Q Consensus        75 ~~i~iwd~~~~~---------~~~~~~--~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~-~~~~~~~~~~---~~  137 (342)
                      ..+.||.+....         ++..+.  ..+.|.++.|.|+..-+++  |+.|.+|++..... +..+......   ..
T Consensus        93 ~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~dn~i~l~~l~ess~~vaev~ss~s~e~~~~  172 (370)
T KOG1007|consen   93 TGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMDDNNIVLWSLDESSKIVAEVLSSESAEMRHS  172 (370)
T ss_pred             eeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEeccCceEEEEcccCcchheeecccccccccce
Confidence            346799875432         222222  2347899999887654444  88999999987644 4444322211   12


Q ss_pred             E--EEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe-cccCCeeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCe
Q 019349          138 L--CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSEAT  213 (342)
Q Consensus       138 ~--~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~-~lat~s~dg~~irlwd~~~~~  213 (342)
                      .  -..+|+.++..+++.+   +++++.||+++.++...+. +|...|..+.|+|+-+ +||||++||. +|+||.+.-+
T Consensus       173 ftsg~WspHHdgnqv~tt~---d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgy-vriWD~R~tk  248 (370)
T KOG1007|consen  173 FTSGAWSPHHDGNQVATTS---DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGY-VRIWDTRKTK  248 (370)
T ss_pred             ecccccCCCCccceEEEeC---CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCcc-EEEEeccCCC
Confidence            2  2455666888888875   7999999999888776664 7999999999999764 5899999997 6999998654


Q ss_pred             -eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          214 -KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       214 -~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                       .+.++..  +..-|+++.|+|...  .++++++.|..|.+|....
T Consensus       249 ~pv~el~~--HsHWvW~VRfn~~hd--qLiLs~~SDs~V~Lsca~s  290 (370)
T KOG1007|consen  249 FPVQELPG--HSHWVWAVRFNPEHD--QLILSGGSDSAVNLSCASS  290 (370)
T ss_pred             ccccccCC--CceEEEEEEecCccc--eEEEecCCCceeEEEeccc
Confidence             4555543  355699999999754  2899999999999998654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.57  E-value=1.6e-12  Score=121.46  Aligned_cols=261  Identities=11%  Similarity=0.094  Sum_probs=160.4

Q ss_pred             EEEEeCCCC-cEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE--E-----EEEecCCceEEE
Q 019349           30 FKIFDSSTG-RLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA--L-----RELNFLTSILAV  100 (342)
Q Consensus        30 ~~v~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~--~-----~~~~~~~~v~~i  100 (342)
                      +.||++... ...+... ...+.++.+.+....++++|.      .+|.|.+||++.+..  .     ....+..++..+
T Consensus       224 ~~vW~~~~p~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~------y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~v  297 (555)
T KOG1587|consen  224 LLVWSLKNPNTPELVLESPSEVTCLKFCPFDPNLLAGGC------YNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAV  297 (555)
T ss_pred             EEEEecCCCCCceEEEecCCceeEEEeccCCcceEEeec------cCceEEEEEccCCCCCCCcccccccccCCcCeEEE
Confidence            578887654 2222222 245666666665555555554      589999999987654  2     223456688888


Q ss_pred             EEcCC----eEEEEE-CCeEEEEECCCCce-eeEE--eCC-------CCCceEEEEeeCCCccEEEEeCCCCccEEEEEE
Q 019349          101 RLNKK----RLVIVL-REKTYIYDANTLAI-LDTI--DTV-------PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN  165 (342)
Q Consensus       101 ~~~~~----~~~~~~-d~~i~i~d~~~~~~-~~~~--~~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd  165 (342)
                      .|..+    .++.++ ||.|..|+++.... ....  ...       ....+..++.+.+........|. ..|.|.--+
T Consensus       298 vW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT-e~G~v~~~~  376 (555)
T KOG1587|consen  298 VWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT-EEGKVYKGC  376 (555)
T ss_pred             EEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc-CCcEEEEEe
Confidence            87432    244444 99999998875432 1111  111       11234455555443322233333 578888744


Q ss_pred             ccCCc--------eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC-CCeeEEEeccCcCceeEEEEEEecCC
Q 019349          166 VMELH--------SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTYPSTIFSLSFGQSM  236 (342)
Q Consensus       166 ~~~~~--------~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~-~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (342)
                      ....+        ....+..|.++|+++.++|=+..+...+.|.+ +|||.-. ....+..+...  ...|++++|||-.
T Consensus       377 r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~-vriWs~~~~~~Pl~~~~~~--~~~v~~vaWSptr  453 (555)
T KOG1587|consen  377 RKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWT-VRIWSEDVIASPLLSLDSS--PDYVTDVAWSPTR  453 (555)
T ss_pred             ccCCcccccccccccccccccCcceEeeecCCCccceeeeeccce-eEeccccCCCCcchhhhhc--cceeeeeEEcCcC
Confidence            32221        23355678999999999997765554444777 5899987 55555555432  4459999999988


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEE
Q 019349          237 QFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVE  316 (342)
Q Consensus       237 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~  316 (342)
                      ..  .|+++..||.|.|||+......+...+.-.  ...+   ....|++.+              ..|++|...|.+++
T Consensus       454 pa--vF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l---~~~~~s~~g--------------~~lavGd~~G~~~~  512 (555)
T KOG1587|consen  454 PA--VFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPAL---TRVRWSPNG--------------KLLAVGDANGTTHI  512 (555)
T ss_pred             ce--EEEEEcCCCceehhhhhccccCCccccccc--cccc---ceeecCCCC--------------cEEEEecCCCcEEE
Confidence            62  889999999999999976654332111111  1111   122444433              67999999999999


Q ss_pred             EEEec
Q 019349          317 YIFSI  321 (342)
Q Consensus       317 ~~~~~  321 (342)
                      |.+.+
T Consensus       513 ~~l~~  517 (555)
T KOG1587|consen  513 LKLSE  517 (555)
T ss_pred             EEcCc
Confidence            99853

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.56  E-value=1.7e-13  Score=118.91  Aligned_cols=199  Identities=14%  Similarity=0.179  Sum_probs=138.7

Q ss_pred             EEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE-EEEecCCceEEEEEcCCeEEEEE--CCeEEEEECCCCcee
Q 019349           50 SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL-RELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAIL  126 (342)
Q Consensus        50 ~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~  126 (342)
                      .++++..++..+++.+.       |+++|+|+..+...+ .+..++.+|.++.|+++...+++  .+..+||+.+++-.+
T Consensus       148 k~vaf~~~gs~latgg~-------dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d~~~VW~~~~g~~~  220 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGT-------DGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGADSARVWSVNTGAAL  220 (398)
T ss_pred             eEEEEcCCCCEeeeccc-------cceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCCceEEEEeccCchh
Confidence            45566666666666654       999999996555544 45567789999999999866655  449999999998665


Q ss_pred             eEEeCCCCCc--eEEEEeeCC--CccEEEEeCCCCccEEEEEEccCCc-----eeEEEecccCCeeEEEECCCCCEEEEE
Q 019349          127 DTIDTVPNLK--GLCAFSPSL--NACFLAVPASTTKGSVLVYNVMELH-----SHCEIDAHQAPLAAIVLSSNGMYIATA  197 (342)
Q Consensus       127 ~~~~~~~~~~--~~~~~~~~~--~~~~l~~~~~~~~g~i~iwd~~~~~-----~~~~~~~h~~~v~~i~~s~dg~~lat~  197 (342)
                      ........+.  ..|-+..++  +..++|+.-. .-+.|+.||+..-+     +.+....-...|+++++|+||+++|.|
T Consensus       221 a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~-~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG  299 (398)
T KOG0771|consen  221 ARKTPFSKDEMFSSCRFSVDNAQETLRLAASQF-PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG  299 (398)
T ss_pred             hhcCCcccchhhhhceecccCCCceEEEEEecC-CCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence            5543222211  122233222  2234444333 45667777763221     111111223469999999999999999


Q ss_pred             eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          198 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       198 s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +.||.+ -+++..+.+.++-.+. .|..-|+.+.|+||.+   ++++.+.+.+++|..+...+.
T Consensus       300 T~dGsV-ai~~~~~lq~~~~vk~-aH~~~VT~ltF~Pdsr---~~~svSs~~~~~v~~l~vd~~  358 (398)
T KOG0771|consen  300 TMDGSV-AIYDAKSLQRLQYVKE-AHLGFVTGLTFSPDSR---YLASVSSDNEAAVTKLAVDKT  358 (398)
T ss_pred             ccCCcE-EEEEeceeeeeEeehh-hheeeeeeEEEcCCcC---cccccccCCceeEEEEeeccc
Confidence            999986 6999999888876654 4566799999999999   999999999999999877543

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.56  E-value=1.3e-14  Score=135.20  Aligned_cols=246  Identities=15%  Similarity=0.180  Sum_probs=173.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      .|-..|+|+.|...|.++.+|+++-+ +||..++..++.....+.-.+..+.-+.+.+.++++     +.|..|++|-+.
T Consensus       188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaa-----S~D~vIrvWrl~  262 (1113)
T KOG0644|consen  188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAA-----SNDKVIRVWRLP  262 (1113)
T ss_pred             hhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhc-----ccCceEEEEecC
Confidence            35567999999999999999999986 999998887776655444444555555555555555     368899999999


Q ss_pred             CCcEEEEEe-cCCceEEEEEcCCeEEEEECCeEEEEECC-CC-------------ceeeEEeCCCCC-------------
Q 019349           84 TGTALRELN-FLTSILAVRLNKKRLVIVLREKTYIYDAN-TL-------------AILDTIDTVPNL-------------  135 (342)
Q Consensus        84 ~~~~~~~~~-~~~~v~~i~~~~~~~~~~~d~~i~i~d~~-~~-------------~~~~~~~~~~~~-------------  135 (342)
                      .+.++..+. +.+.|++|+|+|-. ....||++++||.+ ..             .++..+....+.             
T Consensus       263 ~~~pvsvLrghtgavtaiafsP~~-sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~  341 (1113)
T KOG0644|consen  263 DGAPVSVLRGHTGAVTAIAFSPRA-SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEAR  341 (1113)
T ss_pred             CCchHHHHhccccceeeeccCccc-cCCCCCceEeccccccccccCCCCCCcccccceeeeeccccccccccccCCcccc
Confidence            999887764 56799999999875 11228899999987 11             111111000000             


Q ss_pred             -ceEEEEeeCCCccEEEE----------eCCCCccEEEEEEccCCceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcE
Q 019349          136 -KGLCAFSPSLNACFLAV----------PASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTI  203 (342)
Q Consensus       136 -~~~~~~~~~~~~~~l~~----------~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~  203 (342)
                       ...-++++..+...+++          ... .+-.+.+|++.++...+.+.+|...+..+.++| +-....+++.||..
T Consensus       342 n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar-~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst  420 (1113)
T KOG0644|consen  342 NHEFEQLAWRSNLLIFVTRSSDLSSIVVTAR-NDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGST  420 (1113)
T ss_pred             cchhhHhhhhccceEEEeccccccccceeee-eeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCce
Confidence             00001111111111111          111 356678899999999999999999999999999 44556789999997


Q ss_pred             EEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          204 IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       204 irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      | |||+..|.+++.+..+  ..++..-.||+||+   .++....-|.++|......+..+
T Consensus       421 ~-iwdi~eg~pik~y~~g--h~kl~d~kFSqdgt---s~~lsd~hgql~i~g~gqs~s~k  474 (1113)
T KOG0644|consen  421 I-IWDIWEGIPIKHYFIG--HGKLVDGKFSQDGT---SIALSDDHGQLYILGTGQSKSQK  474 (1113)
T ss_pred             E-eeecccCCcceeeecc--cceeeccccCCCCc---eEecCCCCCceEEeccCCCcccc
Confidence            6 9999999887776644  44577889999999   88888888999999876655443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.56  E-value=2e-12  Score=116.43  Aligned_cols=276  Identities=16%  Similarity=0.162  Sum_probs=179.8

Q ss_pred             CCCCeEEEEEcCCCCEE-EEEcCCc-EEEEeCCCCcEEEEEeeCC-EEEEEEcC-CCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            6 SSYPVFFVSFNQDNSGF-ALSTKDG-FKIFDSSTGRLCYERAVGA-FSIVEMLY-SSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~l-a~g~~~g-~~v~d~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .+..-+.|..+|||+|+ |+|.-+- +++||+.+..+.++.+... +.-+.++. +-...++.-       .|++|.+..
T Consensus        50 ~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~-------~DR~IefHa  122 (703)
T KOG2321|consen   50 MPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQ-------NDRTIEFHA  122 (703)
T ss_pred             CccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEee-------cCceeeehh
Confidence            34556789999999986 5665554 7999999988888876532 22222222 223333433       367766543


Q ss_pred             CCCCcEEEEEecCCceEEEEEc---CCeEEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349           82 TTTGTALRELNFLTSILAVRLN---KKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (342)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  158 (342)
                      . -| .-..+..|..-.+++.+   -+.+++++...|+-+|++.|+.+..+.+......+  +..++...+|++++  .+
T Consensus       123 k-~G-~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~--v~in~~hgLla~Gt--~~  196 (703)
T KOG2321|consen  123 K-YG-RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNV--VSINEEHGLLACGT--ED  196 (703)
T ss_pred             h-cC-eeeeeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccccccccee--eeecCccceEEecc--cC
Confidence            2 22 12233334444556554   34555555779999999999999888776554444  44455556777766  69


Q ss_pred             cEEEEEEccCCceeEEEec------ccC-----CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE
Q 019349          159 GSVLVYNVMELHSHCEIDA------HQA-----PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  227 (342)
Q Consensus       159 g~i~iwd~~~~~~~~~~~~------h~~-----~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v  227 (342)
                      |.|..||.+....+.++..      |..     .|+++.|+.||-.++.|..+|.+ .|+|+++.+++..- .+...-+|
T Consensus       197 g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v-~iyDLRa~~pl~~k-dh~~e~pi  274 (703)
T KOG2321|consen  197 GVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSV-LIYDLRASKPLLVK-DHGYELPI  274 (703)
T ss_pred             ceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcE-EEEEcccCCceeec-ccCCccce
Confidence            9999999988776655542      333     49999999999999999999986 59999998876543 34445578


Q ss_pred             EEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEE
Q 019349          228 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSV  307 (342)
Q Consensus       228 ~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (342)
                      ..+.|.+.+. ++.++ ..+...++|||-.+++...          .+-|..  .          ...+.+-+....+++
T Consensus       275 ~~l~~~~~~~-q~~v~-S~Dk~~~kiWd~~~Gk~~a----------siEpt~--~----------lND~C~~p~sGm~f~  330 (703)
T KOG2321|consen  275 KKLDWQDTDQ-QNKVV-SMDKRILKIWDECTGKPMA----------SIEPTS--D----------LNDFCFVPGSGMFFT  330 (703)
T ss_pred             eeecccccCC-CceEE-ecchHHhhhcccccCCcee----------eccccC--C----------cCceeeecCCceEEE
Confidence            9999977632 12343 3445679999988776522          121110  0          112222344578889


Q ss_pred             EEeCCcEEEEEEe
Q 019349          308 ITYNGYFVEYIFS  320 (342)
Q Consensus       308 ~~~dg~v~~~~~~  320 (342)
                      +-.++.+..|-+.
T Consensus       331 Ane~~~m~~yyiP  343 (703)
T KOG2321|consen  331 ANESSKMHTYYIP  343 (703)
T ss_pred             ecCCCcceeEEcc
Confidence            9999888888553

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.56  E-value=4.5e-14  Score=121.86  Aligned_cols=156  Identities=13%  Similarity=0.150  Sum_probs=108.0

Q ss_pred             eEEEEeeCCCcc-EEEEeCCCCccEEEEEEccCCc---------eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE
Q 019349          137 GLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELH---------SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV  206 (342)
Q Consensus       137 ~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~---------~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl  206 (342)
                      .+..+.+.++.. .+|++|  .|..|++|-+...+         .+..+..|...|++|.|+|+|+.||||+++|.+ -+
T Consensus        15 pv~s~dfq~n~~~~laT~G--~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v-~l   91 (434)
T KOG1009|consen   15 PVYSVDFQKNSLNKLATAG--GDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEV-FL   91 (434)
T ss_pred             ceEEEEeccCcccceeccc--CccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceE-EE
Confidence            344444444443 889988  58899999885432         234567899999999999999999999999986 59


Q ss_pred             EEcC--------C-----C--eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccc
Q 019349          207 FLVS--------E-----A--TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSI  271 (342)
Q Consensus       207 wd~~--------~-----~--~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~  271 (342)
                      |-..        +     .  -.+....++ +...|+.++|+||+.   ++++++.|+++++||+..+........+..+
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~---~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~y  167 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSN---FLVSGSVDNSVRLWDVHAGQLLAILDDHEHY  167 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCc---eeeeeeccceEEEEEeccceeEeeccccccc
Confidence            9765        2     1  011111122 456799999999999   9999999999999999988765543333333


Q ss_pred             ccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          272 LGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      ..       ...|+|..              .++++-+.|...+.+.+.
T Consensus       168 vq-------gvawDpl~--------------qyv~s~s~dr~~~~~~~~  195 (434)
T KOG1009|consen  168 VQ-------GVAWDPLN--------------QYVASKSSDRHPEGFSAK  195 (434)
T ss_pred             cc-------eeecchhh--------------hhhhhhccCcccceeeee
Confidence            22       23677755              455555555555555443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.55  E-value=1.4e-12  Score=112.44  Aligned_cols=222  Identities=11%  Similarity=0.127  Sum_probs=152.5

Q ss_pred             CCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEeCCCCc---------EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCC
Q 019349            5 SSSYPVFFVSFNQDNS-GFALSTKDG-FKIFDSSTGR---------LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~-~la~g~~~g-~~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (342)
                      .|.++|..++|+|-+. .+|+|++|. +.||.+...-         .....|...+..+.+.+....+++.++      .
T Consensus        79 GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag------~  152 (472)
T KOG0303|consen   79 GHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAG------S  152 (472)
T ss_pred             CccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhcc------C
Confidence            6788999999999665 478899987 6999875431         223445577888888877655555554      3


Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                      |++|.+||+.+|+.+.++.++.-|.++.|+.++-.+++   |.+|+|||.++++.+.+-..|......-++-. .++. +
T Consensus       153 Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl-~~g~-i  230 (472)
T KOG0303|consen  153 DNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL-ASGK-I  230 (472)
T ss_pred             CceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEe-ccCc-e
Confidence            99999999999999999999999999999988766655   88999999999998887755554433333322 2344 5


Q ss_pred             EEeCC--CCccEEEEEEccCCce---eEEEecccCCeeEEEECCCCCEEEEEeC-CCcEEEEEEcCCCee-EEEeccCcC
Q 019349          151 AVPAS--TTKGSVLVYNVMELHS---HCEIDAHQAPLAAIVLSSNGMYIATASE-QGTIIRVFLVSEATK-SYSFRRGTY  223 (342)
Q Consensus       151 ~~~~~--~~~g~i~iwd~~~~~~---~~~~~~h~~~v~~i~~s~dg~~lat~s~-dg~~irlwd~~~~~~-~~~~~~~~~  223 (342)
                      ++.|.  ..+.++-+||..+.+.   +..+.. .+.|.-=-|.+|.+.+.-++. |+. ||.|.+.+... ++-+..-..
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~-IRYyEit~d~P~~hyln~f~S  308 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSS-IRYFEITNEPPFVHYLNTFSS  308 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcc-eEEEEecCCCceeEEeccccc
Confidence            55552  2467899999766543   233332 344555557888888877775 554 79999976652 222211111


Q ss_pred             ceeEEEEEEecCC
Q 019349          224 PSTIFSLSFGQSM  236 (342)
Q Consensus       224 ~~~v~~l~fs~d~  236 (342)
                      ..+-..|.|-|..
T Consensus       309 ~epQRG~g~mPKR  321 (472)
T KOG0303|consen  309 KEPQRGMGFMPKR  321 (472)
T ss_pred             CCccccccccccc
Confidence            2234567777654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=1.7e-13  Score=122.94  Aligned_cols=242  Identities=12%  Similarity=0.108  Sum_probs=161.8

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCC--------cEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCC
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTG--------RLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPS   71 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~--------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   71 (342)
                      +.++.+-|+.++|.|-...|++++.+++ ++|+++..        +.+  +..|.+++.++.+..........|      
T Consensus       290 l~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg------  363 (577)
T KOG0642|consen  290 LRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG------  363 (577)
T ss_pred             eecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec------
Confidence            4567788999999999999999999996 99999322        223  334557777777766655554444      


Q ss_pred             CCCCeEEEEECCCCc---------EE-EEE-ecCCceEEEEEcC--CeEEEEE-CCeEEEEECCCCceeeEEeCCCCCce
Q 019349           72 LSPRRLCLFNTTTGT---------AL-REL-NFLTSILAVRLNK--KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKG  137 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~---------~~-~~~-~~~~~v~~i~~~~--~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  137 (342)
                       .|++|+.|++-...         .+ ..+ .+...|..++++.  ++++.++ |++++.|+...... .++........
T Consensus       364 -~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  364 -IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             -cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence             49999999654211         11 112 2345777888864  5666665 99999999876544 23322222222


Q ss_pred             EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec-------ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 019349          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA-------HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS  210 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~-------h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~  210 (342)
                      -..+........+.+++. ..+.-.++++.....+..+..       -...++-+...|.+....++-+|+. ||++|..
T Consensus       442 Plsvd~~ss~~a~~~~s~-~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~-Ir~~dn~  519 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASF-RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRS-IRFFDNK  519 (577)
T ss_pred             cceEeeccchhHhhhhhc-ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCc-eeccccc
Confidence            223333222212222221 234444455555544444432       1245788889999999999999987 6999999


Q ss_pred             CCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          211 EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      +++.+.....+  ...++++++.|++.   +|++++.|+.+++|.++..
T Consensus       520 ~~~~l~s~~a~--~~svtslai~~ng~---~l~s~s~d~sv~l~kld~k  563 (577)
T KOG0642|consen  520 TGKILHSMVAH--KDSVTSLAIDPNGP---YLMSGSHDGSVRLWKLDVK  563 (577)
T ss_pred             ccccchheeec--cceecceeecCCCc---eEEeecCCceeehhhccch
Confidence            99998887643  55699999999999   9999999999999998654

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.54  E-value=2.7e-13  Score=117.77  Aligned_cols=190  Identities=19%  Similarity=0.266  Sum_probs=139.5

Q ss_pred             EEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEE--EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349           11 FFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (342)
Q Consensus        11 ~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~   87 (342)
                      .+++|++||+.|++|..|| +|||+..+...+.  ..+.+.+..+.+.+++..++.+++       | ..+||+..+|-+
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~-------d-~~~VW~~~~g~~  219 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGA-------D-SARVWSVNTGAA  219 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecC-------C-ceEEEEeccCch
Confidence            6899999999999999998 5999976654332  234577888888889999999987       5 899999999977


Q ss_pred             EEEEec-C--CceEEEEEcCCe----EEEEE----CCeEEEEECCCC---ceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           88 LRELNF-L--TSILAVRLNKKR----LVIVL----REKTYIYDANTL---AILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        88 ~~~~~~-~--~~v~~i~~~~~~----~~~~~----d~~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      +..... .  .....+.|..+.    +.++.    .+.|+.|++...   ..++..+.-.....+.+++-++++.++|.+
T Consensus       220 ~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlG  299 (398)
T KOG0771|consen  220 LARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALG  299 (398)
T ss_pred             hhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEe
Confidence            766552 1  134555565443    33333    346666666321   111111111223468889999999999998


Q ss_pred             CCCCccEEEEEEccCCceeEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 019349          154 ASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~  211 (342)
                      +  .+|.|.|++..+.+.++..+ +|...|+.+.|+||.+++++-|.|.+ ++|..+.-
T Consensus       300 T--~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~-~~v~~l~v  355 (398)
T KOG0771|consen  300 T--MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNE-AAVTKLAV  355 (398)
T ss_pred             c--cCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCc-eeEEEEee
Confidence            8  68999999999998887664 79999999999999999999888876 46776643

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.54  E-value=1.9e-12  Score=120.92  Aligned_cols=237  Identities=12%  Similarity=0.091  Sum_probs=153.2

Q ss_pred             CCCCeEEEEEcCCC-CEEEEEcCCc-EEEEeCCCCcEE------EEEee--CCEEEEEEcCCCCe--EEEEcCCCCCCCC
Q 019349            6 SSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGRLC------YERAV--GAFSIVEMLYSSSL--LAIVGAGEQPSLS   73 (342)
Q Consensus         6 ~~~~V~~l~fs~d~-~~la~g~~~g-~~v~d~~~~~~~------~~~~~--~~~~~~~~~~~~~~--~~~~~~g~~~~~~   73 (342)
                      ...+|.|+.|+|.. .+||+|+.+| +-+||+..+...      ...+.  ..+..+.+..+...  ++.++       .
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s-------s  313 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS-------S  313 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEe-------c
Confidence            35689999999965 5677788888 799998776431      11122  33444444433322  33333       4


Q ss_pred             CCeEEEEECCCCcEEE------EEe-------cCCceEEEEE---cCCeEEEEE-CCeEEEEECCCCce--------eeE
Q 019349           74 PRRLCLFNTTTGTALR------ELN-------FLTSILAVRL---NKKRLVIVL-REKTYIYDANTLAI--------LDT  128 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~------~~~-------~~~~v~~i~~---~~~~~~~~~-d~~i~i~d~~~~~~--------~~~  128 (342)
                      |++|..|+++.-....      ...       ....++.++|   .++.+++.+ +|.|+--+-...+.        +..
T Consensus       314 DG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~  393 (555)
T KOG1587|consen  314 DGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHST  393 (555)
T ss_pred             CCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccccc
Confidence            8999999976432211      111       1125677777   456777777 56776633322211        222


Q ss_pred             EeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc-CCceeEEEecccCCeeEEEECCCC-CEEEEEeCCCcEEEE
Q 019349          129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM-ELHSHCEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIRV  206 (342)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~-~~~~~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~irl  206 (342)
                      +..+.  ..+.++..+|=...++.++  .|-+|+||... ...++..+..+...|++++|||-- ..+|++..||. +.+
T Consensus       394 ~~~h~--g~v~~v~~nPF~~k~fls~--gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~-l~i  468 (555)
T KOG1587|consen  394 FITHI--GPVYAVSRNPFYPKNFLSV--GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGN-LDI  468 (555)
T ss_pred             ccccC--cceEeeecCCCccceeeee--ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCc-eeh
Confidence            23333  3455666665444444444  27899999988 677888888888889999999965 57888888998 589


Q ss_pred             EEcCCCee--EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          207 FLVSEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       207 wd~~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      ||+.....  +.....+  ....+.+.|+++++   +|++|...|++++|++...
T Consensus       469 WDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~---~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  469 WDLLQDDEEPVLSQKVC--SPALTRVRWSPNGK---LLAVGDANGTTHILKLSES  518 (555)
T ss_pred             hhhhccccCCccccccc--ccccceeecCCCCc---EEEEecCCCcEEEEEcCch
Confidence            99975433  2222222  23467788999999   9999999999999999643

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.53  E-value=1.6e-11  Score=99.67  Aligned_cols=229  Identities=13%  Similarity=0.167  Sum_probs=152.7

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCc------EEEEE---------eeCCEEEEEEcCCCCeEEEEcCC
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR------LCYER---------AVGAFSIVEMLYSSSLLAIVGAG   67 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~------~~~~~---------~~~~~~~~~~~~~~~~~~~~~~g   67 (342)
                      .+.++.+|++++|.  ..+|.+|.+.-++=|......      .+.+.         +...+..+...+..+-+++++| 
T Consensus        58 eqahdgpiy~~~f~--d~~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgG-  134 (325)
T KOG0649|consen   58 EQAHDGPIYYLAFH--DDFLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGG-  134 (325)
T ss_pred             ccccCCCeeeeeee--hhheeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecC-
Confidence            46789999999999  345667776446777543221      11111         1234555566667778888876 


Q ss_pred             CCCCCCCCeEEEEECCCCcEEEEEecCC-ceEEEEE-cCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCc-------
Q 019349           68 EQPSLSPRRLCLFNTTTGTALRELNFLT-SILAVRL-NKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLK-------  136 (342)
Q Consensus        68 ~~~~~~d~~i~iwd~~~~~~~~~~~~~~-~v~~i~~-~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~-------  136 (342)
                            |+.+..||+++|+...+++.+. .|.++.. +.+..++..  ||++++||+++.+.+..+....++.       
T Consensus       135 ------D~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g  208 (325)
T KOG0649|consen  135 ------DGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWG  208 (325)
T ss_pred             ------CeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccC
Confidence                  8999999999999999887554 7777776 444444433  9999999999999988885544432       


Q ss_pred             -eEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349          137 -GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS  215 (342)
Q Consensus       137 -~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~  215 (342)
                       -+-|++-+  ...+++++   ...+.+|.+++.++...|+- ..++..+.|-.  ..++++++-. .+.-|.+ +|...
T Consensus       209 ~wigala~~--edWlvCGg---Gp~lslwhLrsse~t~vfpi-pa~v~~v~F~~--d~vl~~G~g~-~v~~~~l-~Gvl~  278 (325)
T KOG0649|consen  209 KWIGALAVN--EDWLVCGG---GPKLSLWHLRSSESTCVFPI-PARVHLVDFVD--DCVLIGGEGN-HVQSYTL-NGVLQ  278 (325)
T ss_pred             ceeEEEecc--CceEEecC---CCceeEEeccCCCceEEEec-ccceeEeeeec--ceEEEecccc-ceeeeee-ccEEE
Confidence             13455544  44888776   36799999999988777653 34577788854  4677777544 4678887 46554


Q ss_pred             EEeccCcCceeEEEEEEecC-CCcccEEEEEeCCCcEEEEe
Q 019349          216 YSFRRGTYPSTIFSLSFGQS-MQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d-~~~~~~l~~~s~dg~i~vwd  255 (342)
                      ...+.+.+  ..++..++.. -+   +|-.++..+.++|+.
T Consensus       279 a~ip~~s~--~c~s~s~~~~p~k---~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  279 ANIPVEST--ACYSASWQTSPIK---FISIAGFSNKLHILK  314 (325)
T ss_pred             EeccCCcc--ceeeecccCCceE---EEEecccceeeeeee
Confidence            44433322  2455555422 24   677778888888874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.51  E-value=1.6e-11  Score=119.24  Aligned_cols=245  Identities=11%  Similarity=0.112  Sum_probs=165.2

Q ss_pred             CCCCeEEEEEcCCC-CEEEEEcCCcE-EEEeCCCC---------cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349            6 SSYPVFFVSFNQDN-SGFALSTKDGF-KIFDSSTG---------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         6 ~~~~V~~l~fs~d~-~~la~g~~~g~-~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (342)
                      +...|..++.+++. .++++|++||. ++||+...         ++.+......+..+.+...++.+|+.+       .|
T Consensus      1047 hs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t-------~D 1119 (1431)
T KOG1240|consen 1047 HSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVST-------KD 1119 (1431)
T ss_pred             ccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEc-------CC
Confidence            44566678777766 89999999995 99997432         334555567888899999999998885       49


Q ss_pred             CeEEEEECCCC--c-----EEEEE--ecCCceEEEE-E---cCC-eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEE
Q 019349           75 RRLCLFNTTTG--T-----ALREL--NFLTSILAVR-L---NKK-RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC  139 (342)
Q Consensus        75 ~~i~iwd~~~~--~-----~~~~~--~~~~~v~~i~-~---~~~-~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (342)
                      |.|++.++...  +     +....  ...+.+.++. +   ... .++.++ -+.|..||++.......++.......+.
T Consensus      1120 G~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vT 1199 (1431)
T KOG1240|consen 1120 GSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVT 1199 (1431)
T ss_pred             CeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccccee
Confidence            99999998652  1     11111  1223444432 1   122 334444 4689999998776666665555555677


Q ss_pred             EEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe-cccCCeeEEEECC---CCCEEEEEeC-CCcEEEEEEcCCCee
Q 019349          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSS---NGMYIATASE-QGTIIRVFLVSEATK  214 (342)
Q Consensus       140 ~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~---dg~~lat~s~-dg~~irlwd~~~~~~  214 (342)
                      .++.+|.+++++.+.  ..|.+.+||++=+.++..+. .|..+|+.+...|   .....++++. -.+-+-+|++.+|..
T Consensus      1200 Si~idp~~~WlviGt--s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1200 SIVIDPWCNWLVIGT--SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred             EEEecCCceEEEEec--CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence            888888888998877  57999999999888887765 3457788887766   3356666655 333468999999876


Q ss_pred             EEEeccCc-----------C----ce--eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349          215 SYSFRRGT-----------Y----PS--TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       215 ~~~~~~~~-----------~----~~--~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~  262 (342)
                      -..+....           .    +.  .....++..-+.   ++.+|+.|..|+.||...+...
T Consensus      1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~---~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNG---FLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred             eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCc---eeeecCCccceeeccCCCcccc
Confidence            55553320           0    11  122233433344   8999999999999998876543

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=2.3e-12  Score=119.92  Aligned_cols=212  Identities=12%  Similarity=0.077  Sum_probs=136.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCC----cEEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe--E
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKD----GFKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR--L   77 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~----g~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~--i   77 (342)
                      .+...+.+.+|||||+.|+..+.+    .+.+||+.+++.. .....+......+.++++.++++..      .++.  |
T Consensus       201 ~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wSPDG~~La~~~~------~~g~~~I  274 (429)
T PRK01742        201 RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFSPDGSRLAFASS------KDGVLNI  274 (429)
T ss_pred             cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeECCCCCEEEEEEe------cCCcEEE
Confidence            456679999999999999876532    2789999887532 2212233345678888888887653      2444  5


Q ss_pred             EEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349           78 CLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  152 (342)
                      .+||+.+++..........+....|+++.  ++.++  ++...||++... .....+ .+..    ....++|++..+++
T Consensus       275 y~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~----~~~~~SpDG~~ia~  349 (429)
T PRK01742        275 YVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-GGRG----YSAQISADGKTLVM  349 (429)
T ss_pred             EEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-cCCC----CCccCCCCCCEEEE
Confidence            55677766644333334467788898875  34444  456677765432 122222 2211    23457788889988


Q ss_pred             eCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc--CCCeeEEEeccCcCceeEEEE
Q 019349          153 PASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV--SEATKSYSFRRGTYPSTIFSL  230 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~--~~~~~~~~~~~~~~~~~v~~l  230 (342)
                      .+.  ++ +.+||+.+++.......+  ....+.|+|||++|+.++.+|.. ++|++  .+|+.+.++..  +.+.+...
T Consensus       350 ~~~--~~-i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~-~~l~~~~~~G~~~~~l~~--~~g~~~~p  421 (429)
T PRK01742        350 ING--DN-VVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLG-KVLQLVSADGRFKARLPG--SDGQVKFP  421 (429)
T ss_pred             EcC--CC-EEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCc-eEEEEEECCCCceEEccC--CCCCCCCc
Confidence            763  44 666999888654322222  23567899999999999999874 67775  35777777743  24557788


Q ss_pred             EEecC
Q 019349          231 SFGQS  235 (342)
Q Consensus       231 ~fs~d  235 (342)
                      +|||-
T Consensus       422 ~wsp~  426 (429)
T PRK01742        422 AWSPY  426 (429)
T ss_pred             ccCCC
Confidence            99874

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.51  E-value=7.9e-13  Score=111.30  Aligned_cols=188  Identities=19%  Similarity=0.221  Sum_probs=133.0

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEeC-CCCcEE------EEEeeC---CEEEEEEcCCCC-eEEEEcCCCCCCCCCCeEE
Q 019349           10 VFFVSFNQDNSGFALSTKDGFKIFDS-STGRLC------YERAVG---AFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~~~g~~v~d~-~~~~~~------~~~~~~---~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~i~   78 (342)
                      -.|++|+|||.+|.+|....+|+||+ .+|+..      .....+   -+..+++.+... .+++.+-       -+.+-
T Consensus       161 AhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY-------~q~~g  233 (406)
T KOG2919|consen  161 AHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSY-------GQRVG  233 (406)
T ss_pred             heeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecc-------cceee
Confidence            45899999999999999999999998 566432      111122   233344444333 3444333       46777


Q ss_pred             EEECCCCcEEEEE-ecCCceEEEEEcCCe--EEEEE--CCeEEEEECCC-CceeeEEeCCCC-CceEEEEeeCCCccEEE
Q 019349           79 LFNTTTGTALREL-NFLTSILAVRLNKKR--LVIVL--REKTYIYDANT-LAILDTIDTVPN-LKGLCAFSPSLNACFLA  151 (342)
Q Consensus        79 iwd~~~~~~~~~~-~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~  151 (342)
                      |+....+.++..+ .+.+.|+.++|.+++  +++..  +.+|..||++. ..++..+..+.. ...-+-|...|++.+||
T Consensus       234 iy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~La  313 (406)
T KOG2919|consen  234 IYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILA  313 (406)
T ss_pred             eEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceee
Confidence            7776667766655 455689999997764  44444  78999999975 345555544333 23345567778888999


Q ss_pred             EeCCCCccEEEEEEccC-CceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 019349          152 VPASTTKGSVLVYNVME-LHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS  210 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~-~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~  210 (342)
                      +++  .+|.|++||++. +..+..+..|...++.++++|--..+||+|  |.  |+|-..
T Consensus       314 sG~--tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatss--Gq--r~f~~~  367 (406)
T KOG2919|consen  314 SGD--TDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSS--GQ--RIFKYP  367 (406)
T ss_pred             ccC--CCccEEEEecCCCCCcccccccccccccceecCcccceeeecc--Cc--eeecCC
Confidence            877  799999999998 667888889999999999999988999988  43  455443

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.51  E-value=1.7e-12  Score=115.97  Aligned_cols=183  Identities=14%  Similarity=0.174  Sum_probs=126.2

Q ss_pred             CCCeEEEEECCCCcEEEEEe-----cCCceEEEEEcC--CeEEEEE--CCeEEEEECCC--------------CceeeEE
Q 019349           73 SPRRLCLFNTTTGTALRELN-----FLTSILAVRLNK--KRLVIVL--REKTYIYDANT--------------LAILDTI  129 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~-----~~~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~--------------~~~~~~~  129 (342)
                      ..+.+.+.|....+...-+.     ....|+++.|-+  +.++++.  ++.+++||...              +......
T Consensus       193 ~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~  272 (636)
T KOG2394|consen  193 TTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL  272 (636)
T ss_pred             ccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence            35677777765422111111     135788888843  3444444  88999997631              1111111


Q ss_pred             ----eCCCCC--------ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEE
Q 019349          130 ----DTVPNL--------KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATA  197 (342)
Q Consensus       130 ----~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~  197 (342)
                          ....+|        ..+..++++||+++||+.+  .||.++|+|..+.+.+..++..-+...|++|||||++|+||
T Consensus       273 t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS--qDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyIvtG  350 (636)
T KOG2394|consen  273 TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVS--QDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYIVTG  350 (636)
T ss_pred             eeeccccCCccceeEeccccccceeEcCCCceEEEEe--cCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEEEec
Confidence                011122        2355677888999999999  79999999999988877777777889999999999999999


Q ss_pred             eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec-------------------------------CCC---------
Q 019349          198 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ-------------------------------SMQ---------  237 (342)
Q Consensus       198 s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~-------------------------------d~~---------  237 (342)
                      ++|. ++.||.+..++.+..=  +.|..-|..++|.|                               ++.         
T Consensus       351 GEDD-LVtVwSf~erRVVARG--qGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~  427 (636)
T KOG2394|consen  351 GEDD-LVTVWSFEERRVVARG--QGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSF  427 (636)
T ss_pred             CCcc-eEEEEEeccceEEEec--cccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCccccc
Confidence            9997 6789999998887753  33466688888872                               000         


Q ss_pred             -----cccEEEEEeCCCcEEEEecCCCC
Q 019349          238 -----FQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       238 -----~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                           ....|.+.+.|-.+.+||+....
T Consensus       428 ~~~~~v~YRfGSVGqDTqlcLWDlteD~  455 (636)
T KOG2394|consen  428 NRINSVTYRFGSVGQDTQLCLWDLTEDV  455 (636)
T ss_pred             ccccceEEEeecccccceEEEEecchhh
Confidence                 00267888899999999986543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.49  E-value=6.6e-12  Score=106.10  Aligned_cols=185  Identities=12%  Similarity=0.073  Sum_probs=121.5

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEE-eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349           12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (342)
Q Consensus        12 ~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~   90 (342)
                      -.+|||+|+++|+.+.--+.|-|.++.++..-. -...+..+.+..++-+++ ++.     +.+..|.+|++.+.+.-..
T Consensus        13 ~c~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~yieW~ads~~il-C~~-----yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHIL-CVA-----YKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhhheeeeccceeee-eee-----eccceEEEEEeecceeEEE
Confidence            468999999999998877777787776432100 013455566665554443 333     3678999999999988888


Q ss_pred             EecC-CceEEEEEcCCeE--EEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC---------
Q 019349           91 LNFL-TSILAVRLNKKRL--VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST---------  156 (342)
Q Consensus        91 ~~~~-~~v~~i~~~~~~~--~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------  156 (342)
                      ++.. ..+..++|+|++.  +..+  +-+|.+|.+.+.+.... +-+.  .++-.+++++++++.|...+.         
T Consensus        87 Ideg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK--~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~  163 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPK--TNVKGYAFHPDGQFCAILSRRDCKDYVQIS  163 (447)
T ss_pred             eccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccc--cCceeEEECCCCceeeeeecccHHHHHHHH
Confidence            8764 4889999999873  2233  66999999988654422 1111  233455666777776665421         


Q ss_pred             -------------------------CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349          157 -------------------------TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF  207 (342)
Q Consensus       157 -------------------------~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw  207 (342)
                                               .+..+.+||---...+... .-.-.+..++|+|.+++||.|+.|+. +|+-
T Consensus       164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aY-e~~lG~k~v~wsP~~qflavGsyD~~-lrvl  237 (447)
T KOG4497|consen  164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAY-ERGLGLKFVEWSPCNQFLAVGSYDQM-LRVL  237 (447)
T ss_pred             hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeee-eeccceeEEEeccccceEEeeccchh-hhhh
Confidence                                     3455677774322222111 12346889999999999999999986 4654

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.49  E-value=4.9e-12  Score=104.32  Aligned_cols=111  Identities=17%  Similarity=0.208  Sum_probs=87.5

Q ss_pred             eEEEEeeCCCccEEEEe-CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC---CcEEEEEEcCCC
Q 019349          137 GLCAFSPSLNACFLAVP-ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEA  212 (342)
Q Consensus       137 ~~~~~~~~~~~~~l~~~-~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d---g~~irlwd~~~~  212 (342)
                      .+..++++|++..+|+. |. .++.|.+||++ ++.+..+.  ..+++.|.|||+|++||+|+.+   |. +++||+++.
T Consensus        61 ~I~~~~WsP~g~~favi~g~-~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~-l~~wd~~~~  135 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGS-MPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGD-LEFWDVRKK  135 (194)
T ss_pred             ceEEEEECcCCCEEEEEEcc-CCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcE-EEEEECCCC
Confidence            37888888888776544 43 56799999996 66666664  5678999999999999999754   44 589999999


Q ss_pred             eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeC------CCcEEEEecCCC
Q 019349          213 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS------SGSLHVFSPGFA  259 (342)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~------dg~i~vwd~~~~  259 (342)
                      +.+.++..   . .+..++|+|||+   +|++++.      |+.++||+....
T Consensus       136 ~~i~~~~~---~-~~t~~~WsPdGr---~~~ta~t~~r~~~dng~~Iw~~~G~  181 (194)
T PF08662_consen  136 KKISTFEH---S-DATDVEWSPDGR---YLATATTSPRLRVDNGFKIWSFQGR  181 (194)
T ss_pred             EEeecccc---C-cEEEEEEcCCCC---EEEEEEeccceeccccEEEEEecCe
Confidence            88877642   2 378899999999   8888864      788999998643

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.49  E-value=6.1e-12  Score=108.89  Aligned_cols=245  Identities=13%  Similarity=0.129  Sum_probs=158.1

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCC--------C-----C---cE--EEEEeeCCEEEEEEcCCCCeEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSS--------T-----G---RL--CYERAVGAFSIVEMLYSSSLLAI   63 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~--------~-----~---~~--~~~~~~~~~~~~~~~~~~~~~~~   63 (342)
                      ++.|...|+++.|+|+|..||+|+++| +.+|-..        +     .   ..  ....+...+.-++|.++++++..
T Consensus        61 Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s  140 (434)
T KOG1009|consen   61 LSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS  140 (434)
T ss_pred             ccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeee
Confidence            567889999999999999999999998 4889644        2     1   00  11112244555566666777766


Q ss_pred             EcCCCCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEe-----C---
Q 019349           64 VGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTID-----T---  131 (342)
Q Consensus        64 ~~~g~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~-----~---  131 (342)
                      .+.       |+.+++||+..|+.+.... +...+..++|.+...++++   |...+.+.+...+.++...     .   
T Consensus       141 ~s~-------dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~  213 (434)
T KOG1009|consen  141 GSV-------DNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAF  213 (434)
T ss_pred             eec-------cceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeeccc
Confidence            655       8999999999999887765 4458899999887666554   5556666655433322221     0   


Q ss_pred             CCC-------------CceEEEEeeCCCccEEEEeCCC--Cc-----cEEEEEEccCC-ceeEEEecccCCeeEEEEC--
Q 019349          132 VPN-------------LKGLCAFSPSLNACFLAVPAST--TK-----GSVLVYNVMEL-HSHCEIDAHQAPLAAIVLS--  188 (342)
Q Consensus       132 ~~~-------------~~~~~~~~~~~~~~~l~~~~~~--~~-----g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s--  188 (342)
                      ...             +.-..-+++.|++.+++++..-  ..     ++..+++-... ++...+++...+...+.|+  
T Consensus       214 ~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pV  293 (434)
T KOG1009|consen  214 NEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPV  293 (434)
T ss_pred             CCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeee
Confidence            000             1111234556778787765410  11     22233433211 2344455555555555553  


Q ss_pred             ----------------CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEE
Q 019349          189 ----------------SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLH  252 (342)
Q Consensus       189 ----------------~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~  252 (342)
                                      |-+-.+|.|+.+. + .+||.++-+.+.... ..+-..|+.++|++||.   .|+..|.||...
T Consensus       294 y~elrp~~~~~~~~~lpyrlvfaiAt~~s-v-yvydtq~~~P~~~v~-nihy~~iTDiaws~dg~---~l~vSS~DGyCS  367 (434)
T KOG1009|consen  294 YYELRPLSSEKFLFVLPYRLVFAIATKNS-V-YVYDTQTLEPLAVVD-NIHYSAITDIAWSDDGS---VLLVSSTDGFCS  367 (434)
T ss_pred             EEEeccccccccccccccceEEEEeecce-E-EEeccccccceEEEe-eeeeeeecceeecCCCc---EEEEeccCCceE
Confidence                            3344578888774 4 699999988877664 34566799999999999   999999999988


Q ss_pred             EEecCCCC
Q 019349          253 VFSPGFAI  260 (342)
Q Consensus       253 vwd~~~~~  260 (342)
                      +--++..+
T Consensus       368 ~vtfe~~e  375 (434)
T KOG1009|consen  368 LVTFEPWE  375 (434)
T ss_pred             EEEEcchh
Confidence            87776544

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=6.3e-12  Score=116.96  Aligned_cols=213  Identities=11%  Similarity=0.045  Sum_probs=132.6

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEE--EE-C---CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVI--VL-R---EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~--~~-d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (342)
                      +..|.+||........-......+....|+|+...+  ++ +   ..|++||+.+++... +.....  .....+++||+
T Consensus       183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g--~~~~~~wSPDG  259 (429)
T PRK01742        183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRG--HNGAPAFSPDG  259 (429)
T ss_pred             eEEEEEECCCCCCceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCC--ccCceeECCCC
Confidence            578999998655432222334578999999886433  33 2   379999998875322 211111  12245777888


Q ss_pred             cEEEEeCCCCccEEEEE--EccCCceeEEEecccCCeeEEEECCCCCEEEEEe-CCCcEEEEEEcCCC-eeEEEeccCcC
Q 019349          148 CFLAVPASTTKGSVLVY--NVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEA-TKSYSFRRGTY  223 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iw--d~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s-~dg~~irlwd~~~~-~~~~~~~~~~~  223 (342)
                      ..|+++.. .+|.+.||  |+.+++ ...+..|...+....|+|||+.|+..+ .+|. .+||++... .....+ .+  
T Consensus       260 ~~La~~~~-~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~-~~I~~~~~~~~~~~~l-~~--  333 (429)
T PRK01742        260 SRLAFASS-KDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGS-PQVYRMSASGGGASLV-GG--  333 (429)
T ss_pred             CEEEEEEe-cCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECCCCCEEEEEECCCCC-ceEEEEECCCCCeEEe-cC--
Confidence            88887653 46665555  665554 455666777788999999999888766 4566 478887532 222222 11  


Q ss_pred             ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCcccc
Q 019349          224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRA  303 (342)
Q Consensus       224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (342)
                      ..  .+.+|+||++   +|+.++.++ +.+||+.++.....       ....  ......|+|++              .
T Consensus       334 ~~--~~~~~SpDG~---~ia~~~~~~-i~~~Dl~~g~~~~l-------t~~~--~~~~~~~sPdG--------------~  384 (429)
T PRK01742        334 RG--YSAQISADGK---TLVMINGDN-VVKQDLTSGSTEVL-------SSTF--LDESPSISPNG--------------I  384 (429)
T ss_pred             CC--CCccCCCCCC---EEEEEcCCC-EEEEECCCCCeEEe-------cCCC--CCCCceECCCC--------------C
Confidence            11  4578999999   888887765 55699877643210       0000  00112355544              7


Q ss_pred             EEEEEEeCCcEEEEEEecCCC
Q 019349          304 SVSVITYNGYFVEYIFSINNC  324 (342)
Q Consensus       304 ~l~~~~~dg~v~~~~~~~~~~  324 (342)
                      .|+.++.+|...+|.+....+
T Consensus       385 ~i~~~s~~g~~~~l~~~~~~G  405 (429)
T PRK01742        385 MIIYSSTQGLGKVLQLVSADG  405 (429)
T ss_pred             EEEEEEcCCCceEEEEEECCC
Confidence            899999999988887654333

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.47  E-value=2.4e-13  Score=119.29  Aligned_cols=193  Identities=11%  Similarity=0.118  Sum_probs=153.4

Q ss_pred             EEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcC--CeEEEEECCeEEEEECCCCceeeEE
Q 019349           52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVLREKTYIYDANTLAILDTI  129 (342)
Q Consensus        52 ~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~d~~i~i~d~~~~~~~~~~  129 (342)
                      +....++..+++.+       ..+.|-.+|..+++...++.....|.++.|-.  +.+++|..+.++|||- .|..++.+
T Consensus       135 ~~ytrnGrhlllgG-------rKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~-~GtElHCl  206 (545)
T KOG1272|consen  135 LDYTRNGRHLLLGG-------RKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDN-NGTELHCL  206 (545)
T ss_pred             eeecCCccEEEecC-------CccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecC-CCcEEeeh
Confidence            34445556665544       37899999999999999999989999999843  4555566789999995 45556666


Q ss_pred             eCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 019349          130 DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV  209 (342)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~  209 (342)
                      ..+..   +..+.+-|.-.+|++++  ..|.++--|+.+|+.+..+..-.+++..|+-+|-...+-+|...|++ -+|..
T Consensus       207 k~~~~---v~rLeFLPyHfLL~~~~--~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtV-SlWSP  280 (545)
T KOG1272|consen  207 KRHIR---VARLEFLPYHFLLVAAS--EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTV-SLWSP  280 (545)
T ss_pred             hhcCc---hhhhcccchhheeeecc--cCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceE-EecCC
Confidence            54333   33444455555666666  68999999999999999888888899999999988999999999985 79999


Q ss_pred             CCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          210 SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      ...+.+..+..  +.++|.+|++.++|.   |+|+++.|..++|||++...++.
T Consensus       281 ~skePLvKiLc--H~g~V~siAv~~~G~---YMaTtG~Dr~~kIWDlR~~~ql~  329 (545)
T KOG1272|consen  281 NSKEPLVKILC--HRGPVSSIAVDRGGR---YMATTGLDRKVKIWDLRNFYQLH  329 (545)
T ss_pred             CCcchHHHHHh--cCCCcceEEECCCCc---EEeecccccceeEeeeccccccc
Confidence            98888776653  467799999999999   99999999999999999877544

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.46  E-value=8.7e-12  Score=107.51  Aligned_cols=213  Identities=10%  Similarity=0.122  Sum_probs=144.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC-----cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCC--CeEEEE
Q 019349            9 PVFFVSFNQDNSGFALSTKDG-FKIFDSSTG-----RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP--RRLCLF   80 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d--~~i~iw   80 (342)
                      +|..++.. ||.++ ++.++| +++|....+     +++.-....++..+.-......++..||      ..  +.+++|
T Consensus       107 ~I~gl~~~-dg~Li-tc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GG------ke~~n~lkiw  178 (412)
T KOG3881|consen  107 SIKGLKLA-DGTLI-TCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGG------KENINELKIW  178 (412)
T ss_pred             cccchhhc-CCEEE-EEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCc------hhcccceeee
Confidence            34444332 55544 444455 799987733     3333333355555554444444444444      34  789999


Q ss_pred             ECCCCcEEEEEec----------CCceEEEEEcCC----eEEEEE-CCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeC
Q 019349           81 NTTTGTALRELNF----------LTSILAVRLNKK----RLVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPS  144 (342)
Q Consensus        81 d~~~~~~~~~~~~----------~~~v~~i~~~~~----~~~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~  144 (342)
                      |+.+.+++.+...          +--+.++.|-+.    .++.++ -+++++||.+.+ +++.++....++  +.++...
T Consensus       179 dle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~--is~~~l~  256 (412)
T KOG3881|consen  179 DLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP--ISSTGLT  256 (412)
T ss_pred             ecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCc--ceeeeec
Confidence            9999988876543          112456667443    333344 679999999865 577788776665  4445555


Q ss_pred             CCccEEEEeCCCCccEEEEEEccCCceeEE-EecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349          145 LNACFLAVPASTTKGSVLVYNVMELHSHCE-IDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       145 ~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~-~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~  223 (342)
                      |.+.++.++.  ..|.+..+|++.++.... +++-.+.|++|..+|.+.+||++|-|. .+||+|+++.++++...-   
T Consensus       257 p~gn~Iy~gn--~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDR-yvRIhD~ktrkll~kvYv---  330 (412)
T KOG3881|consen  257 PSGNFIYTGN--TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDR-YVRIHDIKTRKLLHKVYV---  330 (412)
T ss_pred             CCCcEEEEec--ccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccce-eEEEeecccchhhhhhhh---
Confidence            5666777776  579999999999987755 888999999999999999999999996 479999999777765533   


Q ss_pred             ceeEEEEEEecCCC
Q 019349          224 PSTIFSLSFGQSMQ  237 (342)
Q Consensus       224 ~~~v~~l~fs~d~~  237 (342)
                      ...++++-+.++-.
T Consensus       331 Ks~lt~il~~~~~n  344 (412)
T KOG3881|consen  331 KSRLTFILLRDDVN  344 (412)
T ss_pred             hccccEEEecCCcc
Confidence            23467777766543

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.46  E-value=5.8e-12  Score=104.73  Aligned_cols=224  Identities=8%  Similarity=0.113  Sum_probs=149.6

Q ss_pred             CCeEEEEEC--CCCcEEEEE--ecCCceEEEEEcCCeE-----EEE-ECCeEEEEECCC--Ccee--eEEe---CCCCCc
Q 019349           74 PRRLCLFNT--TTGTALREL--NFLTSILAVRLNKKRL-----VIV-LREKTYIYDANT--LAIL--DTID---TVPNLK  136 (342)
Q Consensus        74 d~~i~iwd~--~~~~~~~~~--~~~~~v~~i~~~~~~~-----~~~-~d~~i~i~d~~~--~~~~--~~~~---~~~~~~  136 (342)
                      .|+|.|..+  .+++.+..-  .++-+++.+.|.|+..     .++ +++.+++|.+..  .+..  ..+.   ......
T Consensus        72 ~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~a  151 (364)
T KOG0290|consen   72 NNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCA  151 (364)
T ss_pred             CCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCC
Confidence            467766554  455555444  4455889999987642     334 478999999873  2211  1121   222234


Q ss_pred             eEEEEeeCCC-ccEEEEeCCCCccEEEEEEccCCce---eEEEecccCCeeEEEECCCC-CEEEEEeCCCcEEEEEEcCC
Q 019349          137 GLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHS---HCEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       137 ~~~~~~~~~~-~~~l~~~~~~~~g~i~iwd~~~~~~---~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~irlwd~~~  211 (342)
                      .+.+|.++.- -.++.+++  -|-+-.|||++++..   ...+-+|..+|..|+|..++ +.+|+.|.||. +|+||++.
T Consensus       152 PlTSFDWne~dp~~igtSS--iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGS-vRmFDLR~  228 (364)
T KOG0290|consen  152 PLTSFDWNEVDPNLIGTSS--IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGS-VRMFDLRS  228 (364)
T ss_pred             cccccccccCCcceeEeec--ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCc-EEEEEecc
Confidence            5667776543 34565555  689999999998743   45577999999999999865 67999999998 59999998


Q ss_pred             CeeEEEeccCcC-ceeEEEEEEecCCCcccEEEEEeCCC-cEEEEecCCCCCC-CCCCCccccccccccccccccccccc
Q 019349          212 ATKSYSFRRGTY-PSTIFSLSFGQSMQFQDILVATSSSG-SLHVFSPGFAINQ-RRGGRTSSILGSILPESVNEVLDPAD  288 (342)
Q Consensus       212 ~~~~~~~~~~~~-~~~v~~l~fs~d~~~~~~l~~~s~dg-~i~vwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (342)
                      .+.-.-+..... ..+...++|++...  +++|+-..|. .|.|-|++.+..+ .+       +..+....-...|.|..
T Consensus       229 leHSTIIYE~p~~~~pLlRLswnkqDp--nymATf~~dS~~V~iLDiR~P~tpva~-------L~~H~a~VNgIaWaPhS  299 (364)
T KOG0290|consen  229 LEHSTIIYEDPSPSTPLLRLSWNKQDP--NYMATFAMDSNKVVILDIRVPCTPVAR-------LRNHQASVNGIAWAPHS  299 (364)
T ss_pred             cccceEEecCCCCCCcceeeccCcCCc--hHHhhhhcCCceEEEEEecCCCcceeh-------hhcCcccccceEecCCC
Confidence            754222222222 34588899998776  5888877665 5999999876432 22       22222222334677743


Q ss_pred             cceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          289 HHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                                   ...|.+++.|-++-+|++..-
T Consensus       300 -------------~~hictaGDD~qaliWDl~q~  320 (364)
T KOG0290|consen  300 -------------SSHICTAGDDCQALIWDLQQM  320 (364)
T ss_pred             -------------CceeeecCCcceEEEEecccc
Confidence                         268999999999999998643

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.45  E-value=6.8e-12  Score=107.23  Aligned_cols=195  Identities=12%  Similarity=0.167  Sum_probs=129.7

Q ss_pred             ceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc-EEEEeCCCCccEEEEEEccCC--
Q 019349           96 SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMEL--  169 (342)
Q Consensus        96 ~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~--  169 (342)
                      .++.++|++..+..+.   |+.|++||-++ +....++ +.....+.++++.|... -++.+.   .+.|-+|.....  
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lk-s~sQrnvtclawRPlsaselavgC---r~gIciW~~s~tln  174 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLK-SVSQRNVTCLAWRPLSASELAVGC---RAGICIWSDSRTLN  174 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceec-chhhcceeEEEeccCCcceeeeee---cceeEEEEcCcccc
Confidence            5778899887554433   88999999877 3333443 33445688888877543 444444   356999976321  


Q ss_pred             --c----------eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCC
Q 019349          170 --H----------SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       170 --~----------~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (342)
                        .          .+..-++| .+|++|+|++||..|+++|-+..-|+|||..+++.+.-...+  .+.+.-+.||||+.
T Consensus       175 ~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~g--lgg~slLkwSPdgd  251 (445)
T KOG2139|consen  175 ANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKG--LGGFSLLKWSPDGD  251 (445)
T ss_pred             cccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccC--CCceeeEEEcCCCC
Confidence              1          11222355 789999999999999999988777899999999876544332  34477899999998


Q ss_pred             cccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEE
Q 019349          238 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEY  317 (342)
Q Consensus       238 ~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~  317 (342)
                         +|.+++-|+..++|+........    ... +++  ......+|+|.+.+             .|++++..-.+|..
T Consensus       252 ---~lfaAt~davfrlw~e~q~wt~e----rw~-lgs--grvqtacWspcGsf-------------LLf~~sgsp~lysl  308 (445)
T KOG2139|consen  252 ---VLFAATCDAVFRLWQENQSWTKE----RWI-LGS--GRVQTACWSPCGSF-------------LLFACSGSPRLYSL  308 (445)
T ss_pred             ---EEEEecccceeeeehhcccceec----cee-ccC--CceeeeeecCCCCE-------------EEEEEcCCceEEEE
Confidence               99999999999999754432111    001 111  12235699998843             35555555555555


Q ss_pred             EEec
Q 019349          318 IFSI  321 (342)
Q Consensus       318 ~~~~  321 (342)
                      .++.
T Consensus       309 ~f~~  312 (445)
T KOG2139|consen  309 TFDG  312 (445)
T ss_pred             eecC
Confidence            5543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.42  E-value=2e-11  Score=111.90  Aligned_cols=234  Identities=16%  Similarity=0.170  Sum_probs=153.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCC-CcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSST-GRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      -.|...|+|++|+.||+.+|+|+.|. +.+|+..- |.+.|+ |...+.++.+.+-+..++.++-        +..-+|.
T Consensus        50 KgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYS-H~D~IQCMsFNP~~h~LasCsL--------sdFglWS  120 (1081)
T KOG1538|consen   50 KGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYS-HNDAIQCMSFNPITHQLASCSL--------SDFGLWS  120 (1081)
T ss_pred             ccccceEEEEEEccCCceeccCCCceeEEEecccccceeeec-cCCeeeEeecCchHHHhhhcch--------hhccccC
Confidence            46788999999999999999998776 59998653 344444 4455665555555566666654        4567887


Q ss_pred             CCCCcEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCC-CCCceEEEEeeCCCc-----cEEEE
Q 019349           82 TTTGTALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLNA-----CFLAV  152 (342)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-----~~l~~  152 (342)
                      .... .+........+.+.+|+.++.+++.   +|+|.|=+-. ++.-..++.+ .....+.+++++|..     ..+++
T Consensus       121 ~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV  198 (1081)
T KOG1538|consen  121 PEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAV  198 (1081)
T ss_pred             hhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEE
Confidence            6543 2333333457888899888766654   8898887643 3333334332 233456666666542     23333


Q ss_pred             eCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349          153 PASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  232 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f  232 (342)
                      ..  ...++..+.+. |+.+..-+.-.-...|+.+-++|.++..|+.|+. +++|- +.|-.+.++.  ....-|++++.
T Consensus       199 ~D--W~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~-L~~fT-R~GvrLGTvg--~~D~WIWtV~~  271 (1081)
T KOG1538|consen  199 AD--WGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQ-LSLFT-RDGVRLGTVG--EQDSWIWTVQA  271 (1081)
T ss_pred             Ee--ccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCc-eEEEe-ecCeEEeecc--ccceeEEEEEE
Confidence            33  33444444432 2222211122234578999999999999999986 46665 6777777663  23556999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          233 GQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       233 s~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      .|+++   ..+.|+.||||-.|++-.
T Consensus       272 ~PNsQ---~v~~GCqDGTiACyNl~f  294 (1081)
T KOG1538|consen  272 KPNSQ---YVVVGCQDGTIACYNLIF  294 (1081)
T ss_pred             ccCCc---eEEEEEccCeeehhhhHH
Confidence            99999   999999999999998743

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.42  E-value=4e-11  Score=101.01  Aligned_cols=201  Identities=14%  Similarity=0.094  Sum_probs=138.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCc---EE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            7 SYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGR---LC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..+|+|.+|++|++.+|++.+. .+.||......   ..  +..|...+..+++.+..+.+..++.       |+.-.+|
T Consensus        10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~-------drnayVw   82 (361)
T KOG1523|consen   10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH-------DRNAYVW   82 (361)
T ss_pred             cCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccC-------CCCcccc
Confidence            4789999999999999999776 57898765543   21  2234466677777777777777764       6666777


Q ss_pred             EC-CCCcEEEEEecCCceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349           81 NT-TTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        81 d~-~~~~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      .. ..++...++.                                 +..+     .....++.++|++..+|+++  ...
T Consensus        83 ~~~~~~~Wkptlv---------------------------------LlRi-----NrAAt~V~WsP~enkFAVgS--gar  122 (361)
T KOG1523|consen   83 TQPSGGTWKPTLV---------------------------------LLRI-----NRAATCVKWSPKENKFAVGS--GAR  122 (361)
T ss_pred             ccCCCCeecccee---------------------------------EEEe-----ccceeeEeecCcCceEEecc--Ccc
Confidence            65 2222111110                                 0011     22455667777777888776  467


Q ss_pred             EEEEEEccCCcee----EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC------------------CeeEEE
Q 019349          160 SVLVYNVMELHSH----CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE------------------ATKSYS  217 (342)
Q Consensus       160 ~i~iwd~~~~~~~----~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~------------------~~~~~~  217 (342)
                      .|.||-.+....-    +.-+.+.+.|++++|+|++-+||+||.|+.. |||...-                  |+++.+
T Consensus       123 ~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~-rVfSayIK~Vdekpap~pWgsk~PFG~lm~E  201 (361)
T KOG1523|consen  123 LISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKC-RVFSAYIKGVDEKPAPTPWGSKMPFGQLMSE  201 (361)
T ss_pred             EEEEEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcce-eEEEEeeeccccCCCCCCCccCCcHHHHHHh
Confidence            8888887654321    1223578899999999999999999999985 8987521                  112223


Q ss_pred             eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      +.  ...+-+..+.|+|+|.   .|+-.+.|.++.+=|...+.
T Consensus       202 ~~--~~ggwvh~v~fs~sG~---~lawv~Hds~v~~~da~~p~  239 (361)
T KOG1523|consen  202 AS--SSGGWVHGVLFSPSGN---RLAWVGHDSTVSFVDAAGPS  239 (361)
T ss_pred             hc--cCCCceeeeEeCCCCC---EeeEecCCCceEEeecCCCc
Confidence            31  1234589999999998   99999999999999987765

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.42  E-value=4.9e-11  Score=102.96  Aligned_cols=242  Identities=14%  Similarity=0.123  Sum_probs=158.5

Q ss_pred             CCCCeEEEEEcCCCCE-EEEEc--CCcEEEEeCCCCcEEEEE------eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            6 SSYPVFFVSFNQDNSG-FALST--KDGFKIFDSSTGRLCYER------AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~-la~g~--~~g~~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      ....|.+++|.-|++. +..+.  ++-+..+.+..+.+....      ..+.-.+..+......+.++-.       ++.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg~Litc~~-------sG~  126 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADGTLITCVS-------SGN  126 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCCEEEEEec-------CCc
Confidence            3456788888877753 33333  333555555444332221      1122233344444455555543       789


Q ss_pred             EEEEECCCCc----EEEEEecCCceEEEEEcCCe-EEEE-E--C--CeEEEEECCCCceeeEEeCCCCC-------ceEE
Q 019349           77 LCLFNTTTGT----ALRELNFLTSILAVRLNKKR-LVIV-L--R--EKTYIYDANTLAILDTIDTVPNL-------KGLC  139 (342)
Q Consensus        77 i~iwd~~~~~----~~~~~~~~~~v~~i~~~~~~-~~~~-~--d--~~i~i~d~~~~~~~~~~~~~~~~-------~~~~  139 (342)
                      +.+|..+.+.    .+..+.....+..+.-.+.. -+++ +  .  +.++|||++..+.+.+-...++.       .=+.
T Consensus       127 l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~t  206 (412)
T KOG3881|consen  127 LQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWIT  206 (412)
T ss_pred             EEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeec
Confidence            9999988443    33344444555555554432 2233 2  3  57899999887555443322221       1111


Q ss_pred             EEeeCCC--ccEEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE
Q 019349          140 AFSPSLN--ACFLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY  216 (342)
Q Consensus       140 ~~~~~~~--~~~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~  216 (342)
                      .+-+-+.  ...+|++.  .-++|++||.+.+ +++..+.--+.+|+++...|+|+++++|-.-|.+ ..||++.++.+.
T Consensus       207 di~Fl~g~~~~~fat~T--~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l-~~FD~r~~kl~g  283 (412)
T KOG3881|consen  207 DIRFLEGSPNYKFATIT--RYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQL-AKFDLRGGKLLG  283 (412)
T ss_pred             cceecCCCCCceEEEEe--cceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchh-heecccCceeec
Confidence            2222222  45667666  4699999999765 4788888888999999999999999999999985 799999999887


Q ss_pred             EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          217 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      ....+ ..+.|.++..+|..+   +||+++-|..|+|+|+++.+.
T Consensus       284 ~~~kg-~tGsirsih~hp~~~---~las~GLDRyvRIhD~ktrkl  324 (412)
T KOG3881|consen  284 CGLKG-ITGSIRSIHCHPTHP---VLASCGLDRYVRIHDIKTRKL  324 (412)
T ss_pred             cccCC-ccCCcceEEEcCCCc---eEEeeccceeEEEeecccchh
Confidence            74433 245699999999999   999999999999999998554

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.41  E-value=3.5e-12  Score=116.04  Aligned_cols=178  Identities=12%  Similarity=0.169  Sum_probs=127.9

Q ss_pred             CCeEEEEECCCC-cE----EEEEecCCceEEEEEcC---CeEEEEE-CCeEEEEECCCCce-------eeEEeCCCCCce
Q 019349           74 PRRLCLFNTTTG-TA----LRELNFLTSILAVRLNK---KRLVIVL-REKTYIYDANTLAI-------LDTIDTVPNLKG  137 (342)
Q Consensus        74 d~~i~iwd~~~~-~~----~~~~~~~~~v~~i~~~~---~~~~~~~-d~~i~i~d~~~~~~-------~~~~~~~~~~~~  137 (342)
                      -+.|-|+++... +.    +-.+.....|.++.|+|   .+++++. |+.|++|.+..+..       -..+..|  ...
T Consensus       602 gG~iai~el~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h--~eK  679 (1012)
T KOG1445|consen  602 GGVIAIYELNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIH--GEK  679 (1012)
T ss_pred             CceEEEEEcCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecc--cce
Confidence            478999998653 32    22333345789998865   5788888 78999999965322       2223332  346


Q ss_pred             EEEEeeCCCc-cEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee-E
Q 019349          138 LCAFSPSLNA-CFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-S  215 (342)
Q Consensus       138 ~~~~~~~~~~-~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~-~  215 (342)
                      ++.+-++|-. ..|++++  .|-+|++||+++++....+.+|.+.|..++|||||+.+||-+.||+ +|++.-++++. +
T Consensus       680 I~slRfHPLAadvLa~as--yd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~-~rVy~Prs~e~pv  756 (1012)
T KOG1445|consen  680 ITSLRFHPLAADVLAVAS--YDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT-LRVYEPRSREQPV  756 (1012)
T ss_pred             EEEEEecchhhhHhhhhh--ccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce-EEEeCCCCCCCcc
Confidence            7777777732 3566666  5899999999999998999999999999999999999999999998 59999988753 3


Q ss_pred             EEeccCcCceeEEEEEEecCCCcccEEEEEeCCC----cEEEEecCCCC
Q 019349          216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG----SLHVFSPGFAI  260 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg----~i~vwd~~~~~  260 (342)
                      ++= .+.....--.+.|--|++   ++++.+.|.    .|.+||..+-.
T Consensus       757 ~Eg-~gpvgtRgARi~wacdgr---~viv~Gfdk~SeRQv~~Y~Aq~l~  801 (1012)
T KOG1445|consen  757 YEG-KGPVGTRGARILWACDGR---IVIVVGFDKSSERQVQMYDAQTLD  801 (1012)
T ss_pred             ccC-CCCccCcceeEEEEecCc---EEEEecccccchhhhhhhhhhhcc
Confidence            322 121112233467888998   888877664    58888876543

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.41  E-value=1.5e-12  Score=106.75  Aligned_cols=135  Identities=16%  Similarity=0.218  Sum_probs=99.4

Q ss_pred             CCCCeEEEEECCCCcEEEEE-----------ecCCceEEEEEcCCeE--EE-EECCeEEEEECCC--CceeeEEeCCCCC
Q 019349           72 LSPRRLCLFNTTTGTALREL-----------NFLTSILAVRLNKKRL--VI-VLREKTYIYDANT--LAILDTIDTVPNL  135 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~~-----------~~~~~v~~i~~~~~~~--~~-~~d~~i~i~d~~~--~~~~~~~~~~~~~  135 (342)
                      +.++.+.+||+.++..+..+           .+..+|.++.+.+...  +. ..+..+..|++..  +.+.......-..
T Consensus       172 yEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lkn  251 (323)
T KOG0322|consen  172 YESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKN  251 (323)
T ss_pred             ccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecC
Confidence            46899999999987444332           2345777777754321  11 2256788888753  3322111111112


Q ss_pred             ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 019349          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV  209 (342)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~  209 (342)
                      -++..+..-||++.+|++|  .|+.|+||..++..++..++-|...|++++|+|+...+|.||.|++ |-+|++
T Consensus       252 pGv~gvrIRpD~KIlATAG--WD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~r-ISLWkL  322 (323)
T KOG0322|consen  252 PGVSGVRIRPDGKILATAG--WDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDAR-ISLWKL  322 (323)
T ss_pred             CCccceEEccCCcEEeecc--cCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCce-EEeeec
Confidence            3555667788999999999  7999999999999999999999999999999999999999999998 579986

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.41  E-value=2.4e-10  Score=106.31  Aligned_cols=214  Identities=15%  Similarity=0.059  Sum_probs=137.0

Q ss_pred             EEEEeCCCCcE-EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeE-
Q 019349           30 FKIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL-  107 (342)
Q Consensus        30 ~~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~-  107 (342)
                      +.++|.+.... ........+....+.++++.+++++...    .+..|.+||+.+++......++..+....|+|++. 
T Consensus       181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~----g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~  256 (429)
T PRK03629        181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSK  256 (429)
T ss_pred             EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecC----CCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCE
Confidence            56677765432 2222334566678888888888876321    24679999998887554444555566788988864 


Q ss_pred             -EEEE--CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEE--EEccCCceeEEEecccC
Q 019349          108 -VIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLV--YNVMELHSHCEIDAHQA  180 (342)
Q Consensus       108 -~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~i--wd~~~~~~~~~~~~h~~  180 (342)
                       ++..  ++  .|++||+.+++..+... .  ........++|++..|++.+. .+|..+|  +|+.+++. ..+..+..
T Consensus       257 La~~~~~~g~~~I~~~d~~tg~~~~lt~-~--~~~~~~~~wSPDG~~I~f~s~-~~g~~~Iy~~d~~~g~~-~~lt~~~~  331 (429)
T PRK03629        257 LAFALSKTGSLNLYVMDLASGQIRQVTD-G--RSNNTEPTWFPDSQNLAYTSD-QAGRPQVYKVNINGGAP-QRITWEGS  331 (429)
T ss_pred             EEEEEcCCCCcEEEEEECCCCCEEEccC-C--CCCcCceEECCCCCEEEEEeC-CCCCceEEEEECCCCCe-EEeecCCC
Confidence             3332  33  69999998876543322 2  223455677888888887663 3444444  46666543 34444444


Q ss_pred             CeeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc---EEEEe
Q 019349          181 PLAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS---LHVFS  255 (342)
Q Consensus       181 ~v~~i~~s~dg~~lat~s~dg--~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~---i~vwd  255 (342)
                      ......|+|||++|+..+.++  ..|.+||+.+++. ..+...   .......|+|||+   +|+.++.++.   +.+++
T Consensus       332 ~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~---~~~~~p~~SpDG~---~i~~~s~~~~~~~l~~~~  404 (429)
T PRK03629        332 QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT---FLDETPSIAPNGT---MVIYSSSQGMGSVLNLVS  404 (429)
T ss_pred             CccCEEECCCCCEEEEEEccCCCceEEEEECCCCCe-EEeCCC---CCCCCceECCCCC---EEEEEEcCCCceEEEEEE
Confidence            566789999999998876543  2356899988764 333322   1234578999999   8999988765   67777


Q ss_pred             cCCC
Q 019349          256 PGFA  259 (342)
Q Consensus       256 ~~~~  259 (342)
                      ++..
T Consensus       405 ~~G~  408 (429)
T PRK03629        405 TDGR  408 (429)
T ss_pred             CCCC
Confidence            7544

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.40  E-value=2e-11  Score=116.95  Aligned_cols=188  Identities=14%  Similarity=0.160  Sum_probs=129.7

Q ss_pred             CCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCce--EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccC
Q 019349          104 KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKG--LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA  180 (342)
Q Consensus       104 ~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~  180 (342)
                      ...+++.. ++.+-+||.........+........  .+..-.+++..+++++.  .-|.|.+|+....+.-..+.+|++
T Consensus        99 ~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gs--v~~~iivW~~~~dn~p~~l~GHeG  176 (967)
T KOG0974|consen   99 NKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGS--VFGEIIVWKPHEDNKPIRLKGHEG  176 (967)
T ss_pred             cceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEecc--ccccEEEEeccccCCcceecccCC
Confidence            33445544 88999999988777666543322111  11222345666777766  579999999874333336889999


Q ss_pred             CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          181 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       181 ~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      .|-++.++.||++++|.|+|.+ +|+|++.+.+....-- -.|.+.+..+.|.|+ +    +++++.|-+.++|+.+...
T Consensus       177 ~iF~i~~s~dg~~i~s~SdDRs-iRlW~i~s~~~~~~~~-fgHsaRvw~~~~~~n-~----i~t~gedctcrvW~~~~~~  249 (967)
T KOG0974|consen  177 SIFSIVTSLDGRYIASVSDDRS-IRLWPIDSREVLGCTG-FGHSARVWACCFLPN-R----IITVGEDCTCRVWGVNGTQ  249 (967)
T ss_pred             ceEEEEEccCCcEEEEEecCcc-eeeeecccccccCccc-ccccceeEEEEeccc-e----eEEeccceEEEEEecccce
Confidence            9999999999999999999987 6999999987654211 135778999999987 4    9999999999999655432


Q ss_pred             CCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          261 NQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      -.           .+....-..+|..+-          .+....+++++-||.+++|++.-
T Consensus       250 l~-----------~y~~h~g~~iw~~~~----------~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  250 LE-----------VYDEHSGKGIWKIAV----------PIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             eh-----------hhhhhhhcceeEEEE----------cCCceEEEeeccCcchhhhhhhc
Confidence            21           111111122443322          22335788999999999998753

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.40  E-value=9.4e-10  Score=102.30  Aligned_cols=177  Identities=12%  Similarity=0.017  Sum_probs=113.3

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEE--E----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIV--L----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~--~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (342)
                      ...|.+||........-......+....|+|++..++  +    +..+++|++.+++....... ..  ......++||+
T Consensus       178 ~~~l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~-~~--~~~~~~~SPDG  254 (429)
T PRK03629        178 PYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PR--HNGAPAFSPDG  254 (429)
T ss_pred             ceeEEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCC-CC--CcCCeEECCCC
Confidence            4579999987654433334455788999999864333  2    24799999988754322211 11  12345678888


Q ss_pred             cEEEEeCC-CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE--EcCCCeeEEEeccCcCc
Q 019349          148 CFLAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF--LVSEATKSYSFRRGTYP  224 (342)
Q Consensus       148 ~~l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw--d~~~~~~~~~~~~~~~~  224 (342)
                      ..|++... ..+..|.+||+.+++.. .+..+...+....|+|||+.|+..+.++...+||  |+.+++. ..+...  .
T Consensus       255 ~~La~~~~~~g~~~I~~~d~~tg~~~-~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~--~  330 (429)
T PRK03629        255 SKLAFALSKTGSLNLYVMDLASGQIR-QVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWE--G  330 (429)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCEE-EccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecC--C
Confidence            88887532 12236999999887654 3444455678899999999998888654223455  6666543 233211  2


Q ss_pred             eeEEEEEEecCCCcccEEEEEeCC---CcEEEEecCCCC
Q 019349          225 STIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAI  260 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd~~~~~  260 (342)
                      ......+|+||++   +|+..+.+   ..|.+||++++.
T Consensus       331 ~~~~~~~~SpDG~---~Ia~~~~~~g~~~I~~~dl~~g~  366 (429)
T PRK03629        331 SQNQDADVSSDGK---FMVMVSSNGGQQHIAKQDLATGG  366 (429)
T ss_pred             CCccCEEECCCCC---EEEEEEccCCCceEEEEECCCCC
Confidence            2345688999999   88776544   348888987664

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.39  E-value=6.9e-10  Score=100.57  Aligned_cols=238  Identities=12%  Similarity=0.137  Sum_probs=143.4

Q ss_pred             EEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCC-EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE
Q 019349           11 FFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (342)
Q Consensus        11 ~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~   88 (342)
                      ..+.|+|||+++.+++.++ +.++|+.+.+++.+...+. ...+.+..+++++++...      .++++.++|.++.+.+
T Consensus        40 ~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~------~~~~v~v~D~~tle~v  113 (369)
T PF02239_consen   40 AGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANY------EPGTVSVIDAETLEPV  113 (369)
T ss_dssp             EEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEE------ETTEEEEEETTT--EE
T ss_pred             eEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEec------CCCceeEeccccccce
Confidence            4578999999988777666 6999999999877765543 334677788888876654      5899999999999999


Q ss_pred             EEEecC--------CceEEEEEcCC--eEEEEE--CCeEEEEECCCCcee--eEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           89 RELNFL--------TSILAVRLNKK--RLVIVL--REKTYIYDANTLAIL--DTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        89 ~~~~~~--------~~v~~i~~~~~--~~~~~~--d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      ..+...        +.+.+|..++.  .+++..  .++|.+-|..+.+.+  ..+....   ......++|+++++..+.
T Consensus       114 ~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~---~~~D~~~dpdgry~~va~  190 (369)
T PF02239_consen  114 KTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGR---FPHDGGFDPDGRYFLVAA  190 (369)
T ss_dssp             EEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--T---TEEEEEE-TTSSEEEEEE
T ss_pred             eecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccc---cccccccCcccceeeecc
Confidence            887642        24566655443  344444  368888888776533  3333322   233455667777665543


Q ss_pred             CCCccEEEEEEccCCceeEEE-------------------------------------------------------eccc
Q 019349          155 STTKGSVLVYNVMELHSHCEI-------------------------------------------------------DAHQ  179 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~-------------------------------------------------------~~h~  179 (342)
                      . ..+.|-++|.++++.+..+                                                       +...
T Consensus       191 ~-~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G  269 (369)
T PF02239_consen  191 N-GSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG  269 (369)
T ss_dssp             G-GGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred             c-ccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence            3 4567777777665543322                                                       1111


Q ss_pred             CCeeEEEECCCCCEEEEE---eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeC-CC-cEEEE
Q 019349          180 APLAAIVLSSNGMYIATA---SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SG-SLHVF  254 (342)
Q Consensus       180 ~~v~~i~~s~dg~~lat~---s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~-dg-~i~vw  254 (342)
                      .+ .-+..+|++++|...   +.+...|.++|.++.+.+.++..+. ...+..+.|++||+   ++..+.. .+ .|.||
T Consensus       270 ~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~-~~~~~h~ef~~dG~---~v~vS~~~~~~~i~v~  344 (369)
T PF02239_consen  270 GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGP-GKRVVHMEFNPDGK---EVWVSVWDGNGAIVVY  344 (369)
T ss_dssp             SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHH-T--EEEEEE-TTSS---EEEEEEE--TTEEEEE
T ss_pred             Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccC-CCcEeccEECCCCC---EEEEEEecCCCEEEEE
Confidence            12 236679999999998   4443346899999998887775332 22378899999998   5554443 33 79999


Q ss_pred             ecCCCCCCC
Q 019349          255 SPGFAINQR  263 (342)
Q Consensus       255 d~~~~~~~~  263 (342)
                      |.++.+..+
T Consensus       345 D~~Tl~~~~  353 (369)
T PF02239_consen  345 DAKTLKEKK  353 (369)
T ss_dssp             ETTTTEEEE
T ss_pred             ECCCcEEEE
Confidence            998877544

...

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.38  E-value=1.8e-11  Score=109.49  Aligned_cols=199  Identities=15%  Similarity=0.124  Sum_probs=136.8

Q ss_pred             EEEEEcCCc-EEEEeCCCCcEEE--EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE-EecCCc
Q 019349           21 GFALSTKDG-FKIFDSSTGRLCY--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE-LNFLTS   96 (342)
Q Consensus        21 ~la~g~~~g-~~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~-~~~~~~   96 (342)
                      .|+.++.|| +.+-+ ..++...  +.|.+.+..-.|.+++..++.+|       .|+.|++|. ++|-...+ .+...+
T Consensus        77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~G-------EDG~iKiWS-rsGMLRStl~Q~~~~  147 (737)
T KOG1524|consen   77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAG-------EDGVIKIWS-RSGMLRSTVVQNEES  147 (737)
T ss_pred             eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeec-------CCceEEEEe-ccchHHHHHhhcCce
Confidence            456666666 55554 3344332  23444455555666666666655       499999997 34433222 345679


Q ss_pred             eEEEEEcCCe--EEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEE
Q 019349           97 ILAVRLNKKR--LVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE  174 (342)
Q Consensus        97 v~~i~~~~~~--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~  174 (342)
                      |++++|.|+.  ++.+..+.+.|=.+.-...+-..+.|  ..-+.++++++....++++|  .|-..+|||.. |..+.+
T Consensus       148 v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAH--DGiiL~~~W~~~s~lI~sgG--ED~kfKvWD~~-G~~Lf~  222 (737)
T KOG1524|consen  148 IRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAH--DGLVLSLSWSTQSNIIASGG--EDFRFKIWDAQ-GANLFT  222 (737)
T ss_pred             eEEEEECCCCCceEEecCCeEEEeecccccceeEEecc--CcEEEEeecCccccceeecC--CceeEEeeccc-Cccccc
Confidence            9999998864  44444778888777544333344444  44678899999988999988  68999999954 567777


Q ss_pred             EecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEE
Q 019349          175 IDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLH  252 (342)
Q Consensus       175 ~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~  252 (342)
                      -..|+.+|++++|+|| +.++.+|-. + .|            |. ....+.|..++||+||.   .+++|+..|.+-
T Consensus       223 S~~~ey~ITSva~npd-~~~~v~S~n-t-~R------------~~-~p~~GSifnlsWS~DGT---Q~a~gt~~G~v~  281 (737)
T KOG1524|consen  223 SAAEEYAITSVAFNPE-KDYLLWSYN-T-AR------------FS-SPRVGSIFNLSWSADGT---QATCGTSTGQLI  281 (737)
T ss_pred             CChhccceeeeeeccc-cceeeeeee-e-ee------------ec-CCCccceEEEEEcCCCc---eeeccccCceEE
Confidence            7889999999999999 777777754 3 35            11 12234599999999999   999999988753

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.38  E-value=4.8e-10  Score=101.64  Aligned_cols=188  Identities=14%  Similarity=0.124  Sum_probs=143.8

Q ss_pred             CCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEec----CCceEEEEEc--------------------CCeEEEEE--
Q 019349           58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF----LTSILAVRLN--------------------KKRLVIVL--  111 (342)
Q Consensus        58 ~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~----~~~v~~i~~~--------------------~~~~~~~~--  111 (342)
                      ..++|+..+       |+.+++||..+++.-.++..    .+...+..|.                    .+..+++.  
T Consensus         5 ~~~~A~~~~-------~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt   77 (541)
T KOG4547|consen    5 LDYFALSTG-------DGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT   77 (541)
T ss_pred             hheEeecCC-------CCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence            356677765       89999999999887766643    2233333321                    12223322  


Q ss_pred             -CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCC
Q 019349          112 -REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSN  190 (342)
Q Consensus       112 -d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~d  190 (342)
                       .+.|.+|++..++....+.+..++..+.++..+.+...|-+++  .|+.+-.|+......++.+++-...+.+++++||
T Consensus        78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~--ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D  155 (541)
T KOG4547|consen   78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVG--ADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPD  155 (541)
T ss_pred             CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecC--CceeEEEEecccceeeeeeccCCCccceEEEcCC
Confidence             6799999999999999998877777777777666655666666  6899999999999999999998899999999999


Q ss_pred             CCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC-----CCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          191 GMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS-----MQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       191 g~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d-----~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      |..|++||  ++ |++||+++++.+..|..  |.++|.+++|.-+     |.  .+|.+...+.-+.+|-++...+
T Consensus       156 ~~~l~~as--~~-ik~~~~~~kevv~~ftg--h~s~v~t~~f~~~~~g~~G~--~vLssa~~~r~i~~w~v~~~~k  224 (541)
T KOG4547|consen  156 GKILLTAS--RQ-IKVLDIETKEVVITFTG--HGSPVRTLSFTTLIDGIIGK--YVLSSAAAERGITVWVVEKEDK  224 (541)
T ss_pred             CCEEEecc--ce-EEEEEccCceEEEEecC--CCcceEEEEEEEeccccccc--eeeeccccccceeEEEEEcccc
Confidence            99999998  34 69999999999999964  4678999999877     55  2555556677789998776433

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.37  E-value=8.3e-12  Score=112.19  Aligned_cols=205  Identities=12%  Similarity=0.106  Sum_probs=133.8

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC------------cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCC
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG------------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ   69 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   69 (342)
                      ...|.+||.|++..+.+..+.+|+-|| ++.|++...            .-.+..+...+-.+.+....+.++.++    
T Consensus       340 fraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs----  415 (577)
T KOG0642|consen  340 FRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS----  415 (577)
T ss_pred             EecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeec----
Confidence            346889999999999999999998887 699965321            112333334444445544555666665    


Q ss_pred             CCCCCCeEEEEECCCCcEEEEEec---CCceEEEEEcCCeEEEE-ECCeEEEEECCCC---ceeeEEeCCC--CC---ce
Q 019349           70 PSLSPRRLCLFNTTTGTALRELNF---LTSILAVRLNKKRLVIV-LREKTYIYDANTL---AILDTIDTVP--NL---KG  137 (342)
Q Consensus        70 ~~~~d~~i~iwd~~~~~~~~~~~~---~~~v~~i~~~~~~~~~~-~d~~i~i~d~~~~---~~~~~~~~~~--~~---~~  137 (342)
                         .|+++++|+...... .++..   .+....+.+-....... .+.....+++.+.   +.+..+....  .+   ..
T Consensus       416 ---~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~  491 (577)
T KOG0642|consen  416 ---SDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQ  491 (577)
T ss_pred             ---CCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCc
Confidence               499999999876665 22221   22345555544432222 2334444444333   2222222111  11   11


Q ss_pred             EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEE
Q 019349          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS  217 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~  217 (342)
                      +.-+-.+|+..+.+.+.  .++.|+++|..+++.+....+|...++++++.|+|-+|++++.||. +++|.+....++.+
T Consensus       492 in~vVs~~~~~~~~~~h--ed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~s-v~l~kld~k~~~~e  568 (577)
T KOG0642|consen  492 INKVVSHPTADITFTAH--EDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGS-VRLWKLDVKTCVLE  568 (577)
T ss_pred             cceEEecCCCCeeEecc--cCCceecccccccccchheeeccceecceeecCCCceEEeecCCce-eehhhccchheeec
Confidence            22233345555665555  6999999999999999999999999999999999999999999998 58999977766554


Q ss_pred             e
Q 019349          218 F  218 (342)
Q Consensus       218 ~  218 (342)
                      .
T Consensus       569 s  569 (577)
T KOG0642|consen  569 S  569 (577)
T ss_pred             c
Confidence            4

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.36  E-value=6.3e-09  Score=92.59  Aligned_cols=235  Identities=11%  Similarity=0.046  Sum_probs=148.7

Q ss_pred             EcCCCCEEEEEcC-----------CcEEEEeCCCCcEEEEEeeCCE---------EEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349           15 FNQDNSGFALSTK-----------DGFKIFDSSTGRLCYERAVGAF---------SIVEMLYSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus        15 fs~d~~~la~g~~-----------~g~~v~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~g~~~~~~d   74 (342)
                      +||||+.|+++..           +.+.+||+.+.+.+.+...+.-         ..+.+.++++.+.+..-.     .+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~-----p~  127 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS-----PS  127 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCC-----CC
Confidence            9999999876654           4579999999988766553221         145566666666655431     37


Q ss_pred             CeEEEEECCCCcEEEEEecCCceEEEEEcCCe-EEEEECCeEEEEECCC-Ccee-eEEeC-CC--CCceEE-EEeeCCCc
Q 019349           75 RRLCLFNTTTGTALRELNFLTSILAVRLNKKR-LVIVLREKTYIYDANT-LAIL-DTIDT-VP--NLKGLC-AFSPSLNA  147 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~~d~~i~i~d~~~-~~~~-~~~~~-~~--~~~~~~-~~~~~~~~  147 (342)
                      +.|-+.|+.+++.+.++..+....-...+++. .+.+.|+......+.+ ++.. ..... +.  .+.... .+.+ .++
T Consensus       128 ~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~-~dg  206 (352)
T TIGR02658       128 PAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSN-KSG  206 (352)
T ss_pred             CEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEc-CCC
Confidence            89999999999999999877644444444443 3444577666555533 2211 11111 00  000000 1222 255


Q ss_pred             cEEEEeCCCCccEEEEEEccCC-----ceeEEEec-------ccCCeeEEEECCCCCEEEEEeCC---------CcEEEE
Q 019349          148 CFLAVPASTTKGSVLVYNVMEL-----HSHCEIDA-------HQAPLAAIVLSSNGMYIATASEQ---------GTIIRV  206 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~~-----~~~~~~~~-------h~~~v~~i~~s~dg~~lat~s~d---------g~~irl  206 (342)
                      .++..+.   .|+|.+.|+...     +....+..       ....+.-++++++|+.|..+...         ++-+-+
T Consensus       207 ~~~~vs~---eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~V  283 (352)
T TIGR02658       207 RLVWPTY---TGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFV  283 (352)
T ss_pred             cEEEEec---CCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEE
Confidence            5665543   499999996433     33333221       22334459999999988885311         123579


Q ss_pred             EEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCCCCCCC
Q 019349          207 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAINQR  263 (342)
Q Consensus       207 wd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~~~~  263 (342)
                      +|..+++.+..+..+   ..+..|+|+||++  .+|.+.. .++.|.++|+.+.+..+
T Consensus       284 iD~~t~kvi~~i~vG---~~~~~iavS~Dgk--p~lyvtn~~s~~VsViD~~t~k~i~  336 (352)
T TIGR02658       284 VDAKTGKRLRKIELG---HEIDSINVSQDAK--PLLYALSTGDKTLYIFDAETGKELS  336 (352)
T ss_pred             EECCCCeEEEEEeCC---CceeeEEECCCCC--eEEEEeCCCCCcEEEEECcCCeEEe
Confidence            999999999988654   3578999999997  3555555 57899999998887654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.34  E-value=1.6e-09  Score=92.94  Aligned_cols=285  Identities=14%  Similarity=0.160  Sum_probs=171.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CcEEEEeCCCC--cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            7 SYPVFFVSFNQDNSGFALSTK-DGFKIFDSSTG--RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~-~g~~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      +-.++.++|+|--..+|++.. |.+|+||-...  ..+.+.....+.++++.+.+...+.++.       ..-|.+|...
T Consensus        98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~pt~Lks~sQrnvtclawRPlsaselavgC-------r~gIciW~~s  170 (445)
T KOG2139|consen   98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRNVTCLAWRPLSASELAVGC-------RAGICIWSDS  170 (445)
T ss_pred             hcceeeEeechhhhhhhhhccCcEEEEeccCCCCCceecchhhcceeEEEeccCCcceeeeee-------cceeEEEEcC
Confidence            346789999996666777765 45799986553  2223333467888888887765554543       5689999864


Q ss_pred             CC----cEE--------EEEec--CCceEEEEEcCCeEEEEE----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC
Q 019349           84 TG----TAL--------RELNF--LTSILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL  145 (342)
Q Consensus        84 ~~----~~~--------~~~~~--~~~v~~i~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (342)
                      .-    +.+        ..++.  +.+|+++.++++...++.    +..|.|||..++..+.-..  ....++.-+-++|
T Consensus       171 ~tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~--~glgg~slLkwSP  248 (445)
T KOG2139|consen  171 RTLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIP--KGLGGFSLLKWSP  248 (445)
T ss_pred             cccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccc--cCCCceeeEEEcC
Confidence            21    111        11122  348999999999766654    6699999999886654432  2334566677888


Q ss_pred             CccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee-----------
Q 019349          146 NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-----------  214 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~-----------  214 (342)
                      |+.++.++.  -|+..++|+............-.+.|...+|+|+|++|+-++....  +++.+.-..+           
T Consensus       249 dgd~lfaAt--~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgsp--~lysl~f~~~~~~~~~~~~~k  324 (445)
T KOG2139|consen  249 DGDVLFAAT--CDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGSP--RLYSLTFDGEDSVFLRPQSIK  324 (445)
T ss_pred             CCCEEEEec--ccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCCc--eEEEEeecCCCccccCcccce
Confidence            888888877  5899999965543322222223458999999999998777665433  3555432111           


Q ss_pred             ----EEEec-----cCc--CceeEEEEEEecCCCcccEEEEEeCCCc--------EEEEecCCCCCCCCCCCcccccccc
Q 019349          215 ----SYSFR-----RGT--YPSTIFSLSFGQSMQFQDILVATSSSGS--------LHVFSPGFAINQRRGGRTSSILGSI  275 (342)
Q Consensus       215 ----~~~~~-----~~~--~~~~v~~l~fs~d~~~~~~l~~~s~dg~--------i~vwd~~~~~~~~~~~~~~~~~~~~  275 (342)
                          +..+.     .+.  -.+++.+|+|.|.|.   +||+.-..+.        |.+||.+......  -...++.++-
T Consensus       325 ~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGe---yLav~fKg~~~v~~~k~~i~~fdtr~sp~ve--ls~cg~i~ge  399 (445)
T KOG2139|consen  325 RVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGE---YLAVIFKGQSFVLLCKLHISRFDTRKSPPVE--LSYCGMIGGE  399 (445)
T ss_pred             eeeeeccchhhhhhcCcccccCccceeeECCCCC---EEEEEEcCCchhhhhhhhhhhhcccccCceE--EEecccccCC
Confidence                11111     010  023578999999999   9998765433        5666654322111  0001111111


Q ss_pred             ccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          276 LPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      .|..  ..++|          . ..++..|.++=+.|.+..|.++-+
T Consensus       400 ~P~~--IsF~p----------l-~n~g~lLsiaWsTGriq~ypl~f~  433 (445)
T KOG2139|consen  400 YPAY--ISFGP----------L-KNEGRLLSIAWSTGRIQRYPLTFQ  433 (445)
T ss_pred             CCce--EEeee----------c-ccCCcEEEEEeccCceEeeeeEEE
Confidence            1111  01111          1 133456666677999999998753

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.34  E-value=1.6e-10  Score=95.27  Aligned_cols=130  Identities=16%  Similarity=0.214  Sum_probs=88.6

Q ss_pred             cEEEEEEccC-CceeEEEec-ccCCeeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349          159 GSVLVYNVME-LHSHCEIDA-HQAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  234 (342)
Q Consensus       159 g~i~iwd~~~-~~~~~~~~~-h~~~v~~i~~s~dg~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~  234 (342)
                      |...+|.++. ..++..+.- ..++|.+++|+|+|+.+|...  .+.. +.+||++ ++.+..+..    ..+..+.|||
T Consensus        37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~-v~lyd~~-~~~i~~~~~----~~~n~i~wsP  110 (194)
T PF08662_consen   37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAK-VTLYDVK-GKKIFSFGT----QPRNTISWSP  110 (194)
T ss_pred             eeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcc-cEEEcCc-ccEeEeecC----CCceEEEECC
Confidence            4455665532 234444443 345799999999999876553  4555 6899996 777777742    3467899999


Q ss_pred             CCCcccEEEEEeCC---CcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe-
Q 019349          235 SMQFQDILVATSSS---GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY-  310 (342)
Q Consensus       235 d~~~~~~l~~~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-  310 (342)
                      +|+   +|++++.+   |.|.+||++..+.....+         .+......|+|++              .+++++.. 
T Consensus       111 ~G~---~l~~~g~~n~~G~l~~wd~~~~~~i~~~~---------~~~~t~~~WsPdG--------------r~~~ta~t~  164 (194)
T PF08662_consen  111 DGR---FLVLAGFGNLNGDLEFWDVRKKKKISTFE---------HSDATDVEWSPDG--------------RYLATATTS  164 (194)
T ss_pred             CCC---EEEEEEccCCCcEEEEEECCCCEEeeccc---------cCcEEEEEEcCCC--------------CEEEEEEec
Confidence            999   89988754   669999998655433211         1122345788877              66666654 


Q ss_pred             -----CCcEEEEEEe
Q 019349          311 -----NGYFVEYIFS  320 (342)
Q Consensus       311 -----dg~v~~~~~~  320 (342)
                           |..+++|++.
T Consensus       165 ~r~~~dng~~Iw~~~  179 (194)
T PF08662_consen  165 PRLRVDNGFKIWSFQ  179 (194)
T ss_pred             cceeccccEEEEEec
Confidence                 7888899874

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.33  E-value=4.8e-09  Score=95.11  Aligned_cols=186  Identities=13%  Similarity=0.114  Sum_probs=119.5

Q ss_pred             EEcC-CcEEEEeCCCCcEEEEEeeC-CE-EEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEE
Q 019349           24 LSTK-DGFKIFDSSTGRLCYERAVG-AF-SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAV  100 (342)
Q Consensus        24 ~g~~-~g~~v~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i  100 (342)
                      +-.+ +.+.|.|..+.+.+.....+ .. ..+.+..+++++.+.+.       |+.|.++|+.+++.+.++.......++
T Consensus        11 ~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r-------dg~vsviD~~~~~~v~~i~~G~~~~~i   83 (369)
T PF02239_consen   11 VERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR-------DGTVSVIDLATGKVVATIKVGGNPRGI   83 (369)
T ss_dssp             EEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET-------TSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred             EecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC-------CCeEEEEECCcccEEEEEecCCCcceE
Confidence            3443 44799999998887766543 33 23445566777777654       789999999999999999988889999


Q ss_pred             EEcCCe--EEEEE--CCeEEEEECCCCceeeEEeCCCCC-----ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce
Q 019349          101 RLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNL-----KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS  171 (342)
Q Consensus       101 ~~~~~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~  171 (342)
                      ++++++  ++++.  .+.+.++|.++.+.++.+.+...+     ..+.++-.++....++++-. ..+.|.+.|....+.
T Consensus        84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk-d~~~I~vVdy~d~~~  162 (369)
T PF02239_consen   84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLK-DTGEIWVVDYSDPKN  162 (369)
T ss_dssp             EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEET-TTTEEEEEETTTSSC
T ss_pred             EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEc-cCCeEEEEEeccccc
Confidence            998764  44443  789999999999999988664322     23455554555554444433 468899989877654


Q ss_pred             e--EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349          172 H--CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF  218 (342)
Q Consensus       172 ~--~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~  218 (342)
                      +  ..+. .........|+|+|++++.+......+-++|.++++.+..+
T Consensus       163 ~~~~~i~-~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i  210 (369)
T PF02239_consen  163 LKVTTIK-VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI  210 (369)
T ss_dssp             EEEEEEE---TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             cceeeec-ccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence            3  2333 34556778999999998776543334568999888776654

...

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.33  E-value=2.5e-10  Score=111.20  Aligned_cols=238  Identities=8%  Similarity=0.078  Sum_probs=139.4

Q ss_pred             CCCeEEEEECCCC-------cEEEEEe-cCCceEEEE--EcCCeEEEEE-CCeEEEEECCCC---ce----eeEEeCCCC
Q 019349           73 SPRRLCLFNTTTG-------TALRELN-FLTSILAVR--LNKKRLVIVL-REKTYIYDANTL---AI----LDTIDTVPN  134 (342)
Q Consensus        73 ~d~~i~iwd~~~~-------~~~~~~~-~~~~v~~i~--~~~~~~~~~~-d~~i~i~d~~~~---~~----~~~~~~~~~  134 (342)
                      .|++|++||.+.-       +...++. ..+.+..+.  .+.+.+++++ ||.|++.++.--   +.    .+....+ .
T Consensus      1069 ~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~-~ 1147 (1431)
T KOG1240|consen 1069 DDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLK-K 1147 (1431)
T ss_pred             CCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeeccccc-C
Confidence            5999999998642       1223333 234555444  4666777777 899999988641   11    1111111 1


Q ss_pred             CceEEE---EeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 019349          135 LKGLCA---FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID--AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV  209 (342)
Q Consensus       135 ~~~~~~---~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~--~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~  209 (342)
                      ...++.   +........++++.  ..+.|..||+++.....+++  ...+.|++++.+|.++++++|...|.++ +||+
T Consensus      1148 ~g~vv~m~a~~~~~~S~~lvy~T--~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~-lWDL 1224 (1431)
T KOG1240|consen 1148 DGVVVSMHAFTAIVQSHVLVYAT--DLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLV-LWDL 1224 (1431)
T ss_pred             CCceEEeecccccccceeEEEEE--eccceEEecchhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEE-EEEe
Confidence            112222   22222222566655  56889999998876655443  2346799999999999999999999864 9999


Q ss_pred             CCCeeEEEeccCcCceeEEEEEEecC---CCcccEEEEEe--CCCcEEEEecCCCCCCCCCCCc--cccccccccccccc
Q 019349          210 SEATKSYSFRRGTYPSTIFSLSFGQS---MQFQDILVATS--SSGSLHVFSPGFAINQRRGGRT--SSILGSILPESVNE  282 (342)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~l~fs~d---~~~~~~l~~~s--~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~  282 (342)
                      +-+.++..+..+. .+.+..|..+|-   +.   ..++++  ..+.|.+|++.++........+  ...+...+|.-  .
T Consensus      1225 RF~~~i~sw~~P~-~~~i~~v~~~~~~~~~S---~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~--~ 1298 (1431)
T KOG1240|consen 1225 RFRVPILSWEHPA-RAPIRHVWLCPTYPQES---VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSN--D 1298 (1431)
T ss_pred             ecCceeecccCcc-cCCcceEEeeccCCCCc---eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccc--c
Confidence            9999888875433 355666666543   33   455544  4778999999887432211000  00011111110  0


Q ss_pred             cccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          283 VLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      .-.|  +.+..-.+.+.-++..++++++|+.|+.|+....
T Consensus      1299 ~~kp--~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1299 ARKP--DSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred             CCCC--CcccceeeecccCCceeeecCCccceeeccCCCc
Confidence            0001  1111112222334568999999999999976543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.2e-09  Score=101.97  Aligned_cols=177  Identities=15%  Similarity=0.041  Sum_probs=112.2

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeE--EEEE----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL--VIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (342)
                      ..+|.+||........-......+.+..|+|+..  +.+.    ...|++||+.+++... +.....  ...+..++|++
T Consensus       183 ~~~l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g--~~~~~~~SpDG  259 (433)
T PRK04922        183 RYALQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRG--INGAPSFSPDG  259 (433)
T ss_pred             eEEEEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCC--CccCceECCCC
Confidence            3579999986544433334455788889988753  3333    2379999998875432 222111  22355677888


Q ss_pred             cEEEEeCC-CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC-Cc-EEEEEEcCCCeeEEEeccCcCc
Q 019349          148 CFLAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYP  224 (342)
Q Consensus       148 ~~l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d-g~-~irlwd~~~~~~~~~~~~~~~~  224 (342)
                      ..+++... +.+..|.+||+.+++. ..+..|.......+|+|||++|+..+.. |. -|.++|+.+++.. .+...  .
T Consensus       260 ~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~-~lt~~--g  335 (433)
T PRK04922        260 RRLALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE-RLTFQ--G  335 (433)
T ss_pred             CEEEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE-EeecC--C
Confidence            77765432 1234799999988764 3455565556788999999999988753 33 1345677666532 22211  1


Q ss_pred             eeEEEEEEecCCCcccEEEEEeCCC---cEEEEecCCCC
Q 019349          225 STIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGFAI  260 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~s~dg---~i~vwd~~~~~  260 (342)
                      ......+||||++   +|+..+.++   .|.+||+.++.
T Consensus       336 ~~~~~~~~SpDG~---~Ia~~~~~~~~~~I~v~d~~~g~  371 (433)
T PRK04922        336 NYNARASVSPDGK---KIAMVHGSGGQYRIAVMDLSTGS  371 (433)
T ss_pred             CCccCEEECCCCC---EEEEEECCCCceeEEEEECCCCC
Confidence            2244689999999   888765443   59999987654

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.32  E-value=2.1e-09  Score=100.27  Aligned_cols=214  Identities=14%  Similarity=0.072  Sum_probs=133.0

Q ss_pred             EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--
Q 019349           30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--  106 (342)
Q Consensus        30 ~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--  106 (342)
                      +.+||.+..... ...+...+....+.++++.+++++...    ....|.+||+.+++......++.......|+++.  
T Consensus       186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~----~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~SpDG~~  261 (433)
T PRK04922        186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFER----GRSAIYVQDLATGQRELVASFRGINGAPSFSPDGRR  261 (433)
T ss_pred             EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCC----CCcEEEEEECCCCCEEEeccCCCCccCceECCCCCE
Confidence            577887654322 222233455567778888888876421    2457999999888765443444555577888875  


Q ss_pred             EEEEE--CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE--EEEEEccCCceeEEEecccC
Q 019349          107 LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS--VLVYNVMELHSHCEIDAHQA  180 (342)
Q Consensus       107 ~~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~--i~iwd~~~~~~~~~~~~h~~  180 (342)
                      +++..  ++  .|++||+.+++.. .+..+..  .....+++|++..+++.+. .+|.  |.++|+.+++.. .+..+..
T Consensus       262 l~~~~s~~g~~~Iy~~d~~~g~~~-~lt~~~~--~~~~~~~spDG~~l~f~sd-~~g~~~iy~~dl~~g~~~-~lt~~g~  336 (433)
T PRK04922        262 LALTLSRDGNPEIYVMDLGSRQLT-RLTNHFG--IDTEPTWAPDGKSIYFTSD-RGGRPQIYRVAASGGSAE-RLTFQGN  336 (433)
T ss_pred             EEEEEeCCCCceEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEEC-CCCCceEEEEECCCCCeE-EeecCCC
Confidence            33332  33  7999999887643 3322211  2234567788888887653 3444  666677666533 2333334


Q ss_pred             CeeEEEECCCCCEEEEEeCCCc--EEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC---CcEEEEe
Q 019349          181 PLAAIVLSSNGMYIATASEQGT--IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFS  255 (342)
Q Consensus       181 ~v~~i~~s~dg~~lat~s~dg~--~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd  255 (342)
                      .....+|||||++|+..+.++.  -|.+||+.+++.. .+..+.   .....+|+||++   +|+..+.+   +.|++++
T Consensus       337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~---~~~~p~~spdG~---~i~~~s~~~g~~~L~~~~  409 (433)
T PRK04922        337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGS---LDESPSFAPNGS---MVLYATREGGRGVLAAVS  409 (433)
T ss_pred             CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCC---CCCCceECCCCC---EEEEEEecCCceEEEEEE
Confidence            4557899999999988765431  3579999887654 343221   234578999999   77777653   3577777


Q ss_pred             cCCC
Q 019349          256 PGFA  259 (342)
Q Consensus       256 ~~~~  259 (342)
                      ++..
T Consensus       410 ~~g~  413 (433)
T PRK04922        410 TDGR  413 (433)
T ss_pred             CCCC
Confidence            7543

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=8.2e-12  Score=111.96  Aligned_cols=139  Identities=14%  Similarity=0.178  Sum_probs=100.5

Q ss_pred             eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc
Q 019349          171 SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS  250 (342)
Q Consensus       171 ~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~  250 (342)
                      ....+.+|.+-|+|+.|+.||.+|++||+|-++| |||....+++..+..+ |.+.|.++.|-|-.. ..++++|+.|..
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~i-vWd~~~~KllhsI~Tg-HtaNIFsvKFvP~tn-nriv~sgAgDk~  118 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLI-VWDPFEYKLLHSISTG-HTANIFSVKFVPYTN-NRIVLSGAGDKL  118 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEE-eecchhcceeeeeecc-cccceeEEeeeccCC-CeEEEeccCcce
Confidence            3456789999999999999999999999998876 9999988998888765 567899999987421 128999999999


Q ss_pred             EEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccc-cEEEEEEeCCcEEEEEEecCC
Q 019349          251 LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKR-ASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       251 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~v~~~~~~~~~  323 (342)
                      |++||+...++..-   ..+      +.....+|.-...++.  .++..+.+ +.+.++++||.++-|++.+.+
T Consensus       119 i~lfdl~~~~~~~~---d~~------~~~~~~~~~cht~rVK--ria~~p~~PhtfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  119 IKLFDLDSSKEGGM---DHG------MEETTRCWSCHTDRVK--RIATAPNGPHTFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             EEEEeccccccccc---ccC------ccchhhhhhhhhhhhh--heecCCCCCceEEEecCCcceeeecccCCc
Confidence            99999986543110   000      1111234554333332  22222222 689999999999999987644

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=5.6e-11  Score=106.70  Aligned_cols=223  Identities=12%  Similarity=0.096  Sum_probs=144.8

Q ss_pred             cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEE--eeCCCccEEEEeCCCCccEEEEEEcc
Q 019349           93 FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAF--SPSLNACFLAVPASTTKGSVLVYNVM  167 (342)
Q Consensus        93 ~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~g~i~iwd~~  167 (342)
                      +.+=|.++.|+.++.++++   |-.+.|||.-..|+++.+.+.. ...+.++  -|..+...++++.  .|..|+++|+.
T Consensus        49 H~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgH-taNIFsvKFvP~tnnriv~sgA--gDk~i~lfdl~  125 (758)
T KOG1310|consen   49 HTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGH-TANIFSVKFVPYTNNRIVLSGA--GDKLIKLFDLD  125 (758)
T ss_pred             ccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccc-ccceeEEeeeccCCCeEEEecc--CcceEEEEecc
Confidence            3456899999988877766   4489999999889999987643 3345544  4444556666655  68999999997


Q ss_pred             CC----------ceeEEEecccCCeeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCee-------EEEecc-CcCceeEE
Q 019349          168 EL----------HSHCEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATK-------SYSFRR-GTYPSTIF  228 (342)
Q Consensus       168 ~~----------~~~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~irlwd~~~~~~-------~~~~~~-~~~~~~v~  228 (342)
                      ..          +....+..|...|..|+..|++ +.+-++|+||+ ||-+|++....       ...+.. ....-+..
T Consensus       126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGt-irQyDiREph~c~p~~~~~~~l~ny~~~lielk  204 (758)
T KOG1310|consen  126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGT-IRQYDIREPHVCNPDEDCPSILVNYNPQLIELK  204 (758)
T ss_pred             cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcc-eeeecccCCccCCccccccHHHHHhchhhheee
Confidence            42          2445567899999999999999 88999999998 59999986421       000000 00112478


Q ss_pred             EEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCC--------CCCccccccccccccccccccccc----cceeeecc
Q 019349          229 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR--------GGRTSSILGSILPESVNEVLDPAD----HHVLRNAF  296 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~  296 (342)
                      |+..+|...  ++||+|+.|--.++||.+.-.+.-.        +....+.+..+.|.+.   -++.+    -....+.+
T Consensus       205 ~ltisp~rp--~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---kn~~gn~~~~~~~~t~v  279 (758)
T KOG1310|consen  205 CLTISPSRP--YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---KNSQGNLDRYITCCTYV  279 (758)
T ss_pred             eeeecCCCC--ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---cCcccccccceeeeEEE
Confidence            899999887  4999999999999999654322110        0111112222333221   11111    11123566


Q ss_pred             CCCccccEEEEEEeCCcEEEEEEecCCC
Q 019349          297 PAGVKRASVSVITYNGYFVEYIFSINNC  324 (342)
Q Consensus       297 ~~~~~~~~l~~~~~dg~v~~~~~~~~~~  324 (342)
                      .|.|.+.-|++.=+--.||.|++...++
T Consensus       280 tfnpNGtElLvs~~gEhVYlfdvn~~~~  307 (758)
T KOG1310|consen  280 TFNPNGTELLVSWGGEHVYLFDVNEDKS  307 (758)
T ss_pred             EECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence            7777666665555555788888765543

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.32  E-value=6.5e-11  Score=104.85  Aligned_cols=285  Identities=13%  Similarity=0.078  Sum_probs=177.7

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee---CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      +..+.+-|+.|.|+..|+.|++|+++- +.+||+..++.......   ..+.-..+.+.+...-+++.+     .|+.++
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s-----~dgqvr  212 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSS-----RDGQVR  212 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceecc-----ccCcee
Confidence            457889999999999999999999886 59999988866554433   333334555554333333322     488888


Q ss_pred             EEEC-CCCcEEE---EEecCCceEEEEEcC---CeEEEEE-CCeEEEEECCCCceeeEEeCCC--C--CceEEEEeeCCC
Q 019349           79 LFNT-TTGTALR---ELNFLTSILAVRLNK---KRLVIVL-REKTYIYDANTLAILDTIDTVP--N--LKGLCAFSPSLN  146 (342)
Q Consensus        79 iwd~-~~~~~~~---~~~~~~~v~~i~~~~---~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~--~--~~~~~~~~~~~~  146 (342)
                      +=.+ .++.+..   ...+.++|..+++.|   ..++.++ |+.+.-+|++....-..+....  .  ...+..++.+|.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            7665 3444332   234566777777644   4555555 7788889998764333332211  1  246677777776


Q ss_pred             cc-EEEEeCCCCccEEEEEEccCCce------eEEEe------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC--
Q 019349          147 AC-FLAVPASTTKGSVLVYNVMELHS------HCEID------AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE--  211 (342)
Q Consensus       147 ~~-~l~~~~~~~~g~i~iwd~~~~~~------~~~~~------~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~--  211 (342)
                      +. .+|++|  .|..+++||.+....      +..+-      ...-.|+|++|+.++.-|.++-.|-. |.+|.-.-  
T Consensus       293 nt~~faVgG--~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~-IYLF~~~~~~  369 (559)
T KOG1334|consen  293 NTNEFAVGG--SDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDED-IYLFNKSMGD  369 (559)
T ss_pred             CccccccCC--hhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccc-eEEecccccc
Confidence            65 566666  689999999864321      22221      12246999999987776666666654 56884322  


Q ss_pred             C----------eeEEE-eccCcCceeEEEEEE-ecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccc
Q 019349          212 A----------TKSYS-FRRGTYPSTIFSLSF-GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPES  279 (342)
Q Consensus       212 ~----------~~~~~-~~~~~~~~~v~~l~f-s~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  279 (342)
                      |          ..++. ++.+.....|..+-| -|...   |+++||+=|.|.||+=.+.+..+-          +..+ 
T Consensus       370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsE---yVvSGSDCGhIFiW~K~t~eii~~----------MegD-  435 (559)
T KOG1334|consen  370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSE---YVVSGSDCGHIFIWDKKTGEIIRF----------MEGD-  435 (559)
T ss_pred             CCCCCCCcchhhccchhhcccccccccceeeeccCccc---eEEecCccceEEEEecchhHHHHH----------hhcc-
Confidence            2          11222 333323344777876 46666   999999999999999655543221          1111 


Q ss_pred             ccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          280 VNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                              .  ..+..+...|-.+.|++.+-|-.|+||.-
T Consensus       436 --------r--~VVNCLEpHP~~PvLAsSGid~DVKIWTP  465 (559)
T KOG1334|consen  436 --------R--HVVNCLEPHPHLPVLASSGIDHDVKIWTP  465 (559)
T ss_pred             --------c--ceEeccCCCCCCchhhccCCccceeeecC
Confidence                    1  11222222344567999999999999963

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.31  E-value=2.5e-08  Score=90.22  Aligned_cols=238  Identities=14%  Similarity=0.180  Sum_probs=147.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-----cEEEEeCCC--CcEEE--EEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            8 YPVFFVSFNQDNSGFALSTKD-----GFKIFDSST--GRLCY--ERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~-----g~~v~d~~~--~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      .....++++|++++|.+..+.     ++..|.++.  +++..  ...  ...-..+.+..+..+++++.-      ..+.
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany------~~g~  110 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANY------GGGS  110 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEET------TTTE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEc------cCCe
Confidence            345678999999999887653     366776654  44432  222  233345677777788877764      4789


Q ss_pred             EEEEECCC-CcEEEE---Eec-----------CCceEEEEEcCCe--EEEEE--CCeEEEEECCCCc--e--eeEEeCCC
Q 019349           77 LCLFNTTT-GTALRE---LNF-----------LTSILAVRLNKKR--LVIVL--REKTYIYDANTLA--I--LDTIDTVP  133 (342)
Q Consensus        77 i~iwd~~~-~~~~~~---~~~-----------~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~--~--~~~~~~~~  133 (342)
                      |.++++.. |.....   +.+           .....++.++|+.  ++++.  .+.|++|++....  +  ...+..+.
T Consensus       111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~  190 (345)
T PF10282_consen  111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP  190 (345)
T ss_dssp             EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST
T ss_pred             EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc
Confidence            99999976 333222   211           2356788898873  44444  5699999997654  3  23333322


Q ss_pred             CCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc--CCc--eeEEEecc------cCCeeEEEECCCCCEEEEEeCCCcE
Q 019349          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM--ELH--SHCEIDAH------QAPLAAIVLSSNGMYIATASEQGTI  203 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~--~~~--~~~~~~~h------~~~v~~i~~s~dg~~lat~s~dg~~  203 (342)
                       ..+-.-+.++|++.++.+... .+++|.++++.  +++  .+..+...      ......|+++|||++|.++......
T Consensus       191 -G~GPRh~~f~pdg~~~Yv~~e-~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~s  268 (345)
T PF10282_consen  191 -GSGPRHLAFSPDGKYAYVVNE-LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNS  268 (345)
T ss_dssp             -TSSEEEEEE-TTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTE
T ss_pred             -CCCCcEEEEcCCcCEEEEecC-CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCE
Confidence             234445566677777766654 68999999988  432  22333211      1257889999999998887765555


Q ss_pred             EEEEEcC--CCe--eEEEeccCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCC
Q 019349          204 IRVFLVS--EAT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGF  258 (342)
Q Consensus       204 irlwd~~--~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~  258 (342)
                      |-+|++.  +|+  .+..+..+  ....+.++|+|+++   +|+++. .+++|.+|+++.
T Consensus       269 I~vf~~d~~~g~l~~~~~~~~~--G~~Pr~~~~s~~g~---~l~Va~~~s~~v~vf~~d~  323 (345)
T PF10282_consen  269 ISVFDLDPATGTLTLVQTVPTG--GKFPRHFAFSPDGR---YLYVANQDSNTVSVFDIDP  323 (345)
T ss_dssp             EEEEEECTTTTTEEEEEEEEES--SSSEEEEEE-TTSS---EEEEEETTTTEEEEEEEET
T ss_pred             EEEEEEecCCCceEEEEEEeCC--CCCccEEEEeCCCC---EEEEEecCCCeEEEEEEeC
Confidence            6799993  343  33333321  22368899999999   888776 567899998853

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.31  E-value=1.7e-11  Score=109.62  Aligned_cols=155  Identities=14%  Similarity=0.201  Sum_probs=99.9

Q ss_pred             CCeEEEEECCCCceeeEE--eCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC--------------c-----
Q 019349          112 REKTYIYDANTLAILDTI--DTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL--------------H-----  170 (342)
Q Consensus       112 d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~--------------~-----  170 (342)
                      .+.+.+.|....+..+.+  ....+...+.++.+-+....++.... .+|.+.+||....              .     
T Consensus       194 tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~-~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~  272 (636)
T KOG2394|consen  194 TGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAH-ASGNLYLYDKEIVCGATAPSYQALKDGDQFAIL  272 (636)
T ss_pred             cCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEE-ecCceEEeeccccccCCCCcccccCCCCeeEEe
Confidence            677777776442211111  12223345566665443322322333 4788888875211              0     


Q ss_pred             ---------eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349          171 ---------SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI  241 (342)
Q Consensus       171 ---------~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~  241 (342)
                               ++..+.--+..|+..+|||||++||+-|.||. +||||..+.+++..++.  .-+-..|++||||++   |
T Consensus       273 t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGf-LRvF~fdt~eLlg~mkS--YFGGLLCvcWSPDGK---y  346 (636)
T KOG2394|consen  273 TSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGF-LRIFDFDTQELLGVMKS--YFGGLLCVCWSPDGK---Y  346 (636)
T ss_pred             eeeccccCCccceeEeccccccceeEcCCCceEEEEecCce-EEEeeccHHHHHHHHHh--hccceEEEEEcCCcc---E
Confidence                     11112222357889999999999999999997 59999988776654431  234589999999999   9


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCCCCCcccccc
Q 019349          242 LVATSSSGSLHVFSPGFAINQRRGGRTSSILG  273 (342)
Q Consensus       242 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  273 (342)
                      |++|++|.-|.||.+...+...+.+.+.+++.
T Consensus       347 IvtGGEDDLVtVwSf~erRVVARGqGHkSWVs  378 (636)
T KOG2394|consen  347 IVTGGEDDLVTVWSFEERRVVARGQGHKSWVS  378 (636)
T ss_pred             EEecCCcceEEEEEeccceEEEecccccccee
Confidence            99999999999999987766555444444443

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=2.3e-09  Score=99.78  Aligned_cols=175  Identities=17%  Similarity=0.074  Sum_probs=109.0

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeE--EEEE--C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL--VIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (342)
                      ...|.+||...............+.+.+|+|++.  +..+  +  ..|++||+.+++... +....  ....+..++||+
T Consensus       175 ~~~L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~--g~~~~~~~SPDG  251 (427)
T PRK02889        175 RYQLQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFK--GSNSAPAWSPDG  251 (427)
T ss_pred             ccEEEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCC--CCccceEECCCC
Confidence            3568888874433333334456788899998763  3333  2  369999998886543 22111  123456778888


Q ss_pred             cEEEEeCCCCccEEEEEE--ccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC-CcEEEEEEc--CCCeeEEEeccCc
Q 019349          148 CFLAVPASTTKGSVLVYN--VMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ-GTIIRVFLV--SEATKSYSFRRGT  222 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd--~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d-g~~irlwd~--~~~~~~~~~~~~~  222 (342)
                      ..|++... .+|...||.  +..+. ...+..|........|+|||+.|+..+.. |. ..+|.+  .+++. ..+... 
T Consensus       252 ~~la~~~~-~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~-~~Iy~~~~~~g~~-~~lt~~-  326 (427)
T PRK02889        252 RTLAVALS-RDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGA-PQIYRMPASGGAA-QRVTFT-  326 (427)
T ss_pred             CEEEEEEc-cCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCC-cEEEEEECCCCce-EEEecC-
Confidence            88876543 466656654  44443 44555566566778999999999877754 44 356655  44432 222111 


Q ss_pred             CceeEEEEEEecCCCcccEEEEEeCCC---cEEEEecCCCC
Q 019349          223 YPSTIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGFAI  260 (342)
Q Consensus       223 ~~~~v~~l~fs~d~~~~~~l~~~s~dg---~i~vwd~~~~~  260 (342)
                       .......+|||||+   +|+..+.++   .|.+||+.++.
T Consensus       327 -g~~~~~~~~SpDG~---~Ia~~s~~~g~~~I~v~d~~~g~  363 (427)
T PRK02889        327 -GSYNTSPRISPDGK---LLAYISRVGGAFKLYVQDLATGQ  363 (427)
T ss_pred             -CCCcCceEECCCCC---EEEEEEccCCcEEEEEEECCCCC
Confidence             11234578999999   888777654   59999987764

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.30  E-value=4.9e-09  Score=88.56  Aligned_cols=154  Identities=12%  Similarity=0.178  Sum_probs=117.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCC-CcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSST-GRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      ..+|.++.+.+|  .|++..++.+.||...+ -++++..+.  .+-+..++.+..+..+++--|    ...+.|+|-|+.
T Consensus        94 ~~~I~~V~l~r~--riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg----~k~GqvQi~dL~  167 (346)
T KOG2111|consen   94 NSEIKAVKLRRD--RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG----FKTGQVQIVDLA  167 (346)
T ss_pred             ccceeeEEEcCC--eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC----CccceEEEEEhh
Confidence            457788888765  58888999999999763 355444332  234455566655544444322    357999999987


Q ss_pred             CCcE---EEEEecCCceEEEEEcCCeEEEEE---CC-eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           84 TGTA---LRELNFLTSILAVRLNKKRLVIVL---RE-KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        84 ~~~~---~~~~~~~~~v~~i~~~~~~~~~~~---d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      ..+.   ..-..|.+.|.+++++.++..+|+   .| -|+|||..++.++.+++.......+++++++|+..+||+++  
T Consensus       168 ~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsS--  245 (346)
T KOG2111|consen  168 STKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSS--  245 (346)
T ss_pred             hcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEc--
Confidence            6554   444457789999999999888877   34 68999999999999999888888999999999999999988  


Q ss_pred             CccEEEEEEccC
Q 019349          157 TKGSVLVYNVME  168 (342)
Q Consensus       157 ~~g~i~iwd~~~  168 (342)
                      ..|+++|+.++.
T Consensus       246 dKgTlHiF~l~~  257 (346)
T KOG2111|consen  246 DKGTLHIFSLRD  257 (346)
T ss_pred             CCCeEEEEEeec
Confidence            689999998864

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.30  E-value=7.2e-09  Score=93.63  Aligned_cols=276  Identities=13%  Similarity=0.151  Sum_probs=161.4

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEE-----cCCCCCCCCCCeEEEEEC
Q 019349            8 YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIV-----GAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~~~~~~d~~i~iwd~   82 (342)
                      -+.+..+++++|+++|.+.++-++|++..++..+.+........+.+.+-.+++.+-     -...++  ..-.+++|+.
T Consensus        35 ~~~~v~~~S~~G~lfA~~~~~~v~i~~~~~~~~~lt~~~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~--~~pn~~v~~v  112 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSDNQVVKVFEIATLKVVLCVELKKTYDLLFSPKGNYLLTWEPWAIYGPKNA--SNPNVLVYNV  112 (566)
T ss_pred             CcceeEEEcCCCcEEEEEcCCeEEEEEccCCcEEEEeccceeeeeeecccccccccccccccccCCCC--CCCceeeeee
Confidence            347888999999999999999999999888865544433333334444444444311     111111  1245789999


Q ss_pred             CCCcEEEEEecCC-ceEEEEEcCCeEEEEE--CCeEEEEECCCCcee-eEEeCCCCCceEEEEeeCCCccEEEEe--CCC
Q 019349           83 TTGTALRELNFLT-SILAVRLNKKRLVIVL--REKTYIYDANTLAIL-DTIDTVPNLKGLCAFSPSLNACFLAVP--AST  156 (342)
Q Consensus        83 ~~~~~~~~~~~~~-~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~  156 (342)
                      +++.....+.... .-....|+.+..+.+-  .+.+++|++.+.+.+ +.+.  ........+++.|....+|+=  +..
T Consensus       113 et~~~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~--~~~i~~f~lSpgp~~~~vAvyvPe~k  190 (566)
T KOG2315|consen  113 ETGVQRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLS--VSGITMLSLSPGPEPPFVAVYVPEKK  190 (566)
T ss_pred             ccceehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeee--ccceeeEEecCCCCCceEEEEccCCC
Confidence            9966665555433 2256777777665554  788999988764322 2221  112233334443333333321  000


Q ss_pred             -CccEEEEE---------------------------------------------------------EccCCceeEEEecc
Q 019349          157 -TKGSVLVY---------------------------------------------------------NVMELHSHCEIDAH  178 (342)
Q Consensus       157 -~~g~i~iw---------------------------------------------------------d~~~~~~~~~~~~h  178 (342)
                       .-+.|+||                                                         ++....+...+ .-
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L-~k  269 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPL-LK  269 (566)
T ss_pred             CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEec-CC
Confidence             11223332                                                         22211111111 12


Q ss_pred             cCCeeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC---CcEEE
Q 019349          179 QAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHV  253 (342)
Q Consensus       179 ~~~v~~i~~s~dg~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d---g~i~v  253 (342)
                      .+||.++.|+|+|+.++..-  .=.+ +-+||++ +..+..|..+    +=+++-|+|.|+   +|+.++-+   |.|-|
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAk-vtifnlr-~~~v~df~eg----pRN~~~fnp~g~---ii~lAGFGNL~G~mEv  340 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAK-VTIFNLR-GKPVFDFPEG----PRNTAFFNPHGN---IILLAGFGNLPGDMEV  340 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccce-EEEEcCC-CCEeEeCCCC----CccceEECCCCC---EEEEeecCCCCCceEE
Confidence            68999999999998776653  2233 4689985 7888888544    346788999998   88887765   78999


Q ss_pred             EecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe------CCcEEEEEEe
Q 019349          254 FSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY------NGYFVEYIFS  320 (342)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------dg~v~~~~~~  320 (342)
                      ||+...+...+.         .-+....+-|+|++              .++++++.      |..++||.++
T Consensus       341 wDv~n~K~i~~~---------~a~~tt~~eW~PdG--------------e~flTATTaPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  341 WDVPNRKLIAKF---------KAANTTVFEWSPDG--------------EYFLTATTAPRLRVDNGIKIWHYT  390 (566)
T ss_pred             Eeccchhhcccc---------ccCCceEEEEcCCC--------------cEEEEEeccccEEecCCeEEEEec
Confidence            999875542211         11233456888887              44444432      6667777764

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.30  E-value=4.4e-10  Score=95.73  Aligned_cols=240  Identities=13%  Similarity=0.221  Sum_probs=142.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEeCCC---CcEE----EEEee------------CCEEEEEEcCCCCe-EEEEcC
Q 019349            8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSST---GRLC----YERAV------------GAFSIVEMLYSSSL-LAIVGA   66 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~---~~~~----~~~~~------------~~~~~~~~~~~~~~-~~~~~~   66 (342)
                      .-|.++.|+..|.+||+|..+| +.+|.-+.   ++..    +..|.            ..+..+.++...+. ..++++
T Consensus        26 diis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlst  105 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLST  105 (433)
T ss_pred             cceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEec
Confidence            4588999999999999999988 56664222   2111    11111            13334555555443 234444


Q ss_pred             CCCCCCCCCeEEEEECCCCcE-E--------------EEEe----------------------cCCceEEEEEcCCeEE-
Q 019349           67 GEQPSLSPRRLCLFNTTTGTA-L--------------RELN----------------------FLTSILAVRLNKKRLV-  108 (342)
Q Consensus        67 g~~~~~~d~~i~iwd~~~~~~-~--------------~~~~----------------------~~~~v~~i~~~~~~~~-  108 (342)
                            .|++|++|.+..... .              .+++                      ++-.|.+|.++.|.-. 
T Consensus       106 ------NdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~  179 (433)
T KOG1354|consen  106 ------NDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETF  179 (433)
T ss_pred             ------CCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceE
Confidence                  599999999753211 0              0000                      0114677777766533 


Q ss_pred             EEECC-eEEEEECCCC-ceeeEEeCCCCC-----ceEEEEeeCCCc-cEEEEeCCCCccEEEEEEccCCce----eEEEe
Q 019349          109 IVLRE-KTYIYDANTL-AILDTIDTVPNL-----KGLCAFSPSLNA-CFLAVPASTTKGSVLVYNVMELHS----HCEID  176 (342)
Q Consensus       109 ~~~d~-~i~i~d~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~-~~l~~~~~~~~g~i~iwd~~~~~~----~~~~~  176 (342)
                      +..|+ +|.+|+++-. +....++..+..     .-+.+.-++|.. ..+++++  ..|+|++.|++....    ...+.
T Consensus       180 lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSS--SKGtIrLcDmR~~aLCd~hsKlfE  257 (433)
T KOG1354|consen  180 LSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSS--SKGTIRLCDMRQSALCDAHSKLFE  257 (433)
T ss_pred             eeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEec--CCCcEEEeechhhhhhcchhhhhc
Confidence            33344 9999999632 333333322221     112333344432 3556666  479999999984421    11111


Q ss_pred             ------------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC-CCeeEEEeccCcC----------cee---EEEE
Q 019349          177 ------------AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTY----------PST---IFSL  230 (342)
Q Consensus       177 ------------~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~-~~~~~~~~~~~~~----------~~~---v~~l  230 (342)
                                  +--+.|..+.|+++|+++++-+-- + +++||+. ..+.+..++-+..          ...   -..+
T Consensus       258 epedp~~rsffseiIsSISDvKFs~sGryilsRDyl-t-vk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec  335 (433)
T KOG1354|consen  258 EPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-T-VKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC  335 (433)
T ss_pred             cccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-e-eEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence                        112458889999999999987643 4 6999994 4555555432211          001   2457


Q ss_pred             EEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          231 SFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      +|+-++.   ++++||-.+-+++|++..+.
T Consensus       336 ~~sg~~~---~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  336 SWSGNDS---YVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             EEcCCcc---eEecccccceEEEecCCCCc
Confidence            8999998   99999999999999976554

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.29  E-value=4.5e-10  Score=97.18  Aligned_cols=163  Identities=9%  Similarity=0.118  Sum_probs=123.5

Q ss_pred             cCCceEEEEEcCCeEEEEE---CCeEEEEECCC------CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEE
Q 019349           93 FLTSILAVRLNKKRLVIVL---REKTYIYDANT------LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLV  163 (342)
Q Consensus        93 ~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~i  163 (342)
                      +.+-|.++.|+.+...+++   |..+++|++..      .+++.. ..+++...+.++.++..+.++.+++  .+|+|..
T Consensus        55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-~~~~H~SNIF~L~F~~~N~~~~SG~--~~~~VI~  131 (609)
T KOG4227|consen   55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGV-MEHPHRSNIFSLEFDLENRFLYSGE--RWGTVIK  131 (609)
T ss_pred             hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCcee-ccCccccceEEEEEccCCeeEecCC--CcceeEe
Confidence            3456888999887776666   45899999953      345543 3455667899999988777777776  6899999


Q ss_pred             EEccCCceeEEEec--ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecCCCccc
Q 019349          164 YNVMELHSHCEIDA--HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQD  240 (342)
Q Consensus       164 wd~~~~~~~~~~~~--h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~~  240 (342)
                      .|+++.+.+..+..  ..+.|..+..+|-.+.|++.+.++.+ .+||.+..+ .+..+-....+...+++-|+|...  .
T Consensus       132 HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V-~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P--~  208 (609)
T KOG4227|consen  132 HDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLV-SFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP--A  208 (609)
T ss_pred             eecccceeeeeecccCcccceeecccCCCCceEEEEecCceE-EEEeccCCCCCCceeeecCCCccceeeeecCCCc--e
Confidence            99999887766642  23489999999999999999999975 699998765 322222222344578899999876  3


Q ss_pred             EEEEEeCCCcEEEEecCCCCC
Q 019349          241 ILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       241 ~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +|++.+..+-+-+||++.+..
T Consensus       209 Li~~~~~~~G~~~~D~R~~~~  229 (609)
T KOG4227|consen  209 LILVNSETGGPNVFDRRMQAR  229 (609)
T ss_pred             eEEeccccCCCCceeeccccc
Confidence            889999999999999987653

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.28  E-value=1.2e-10  Score=98.30  Aligned_cols=157  Identities=10%  Similarity=0.097  Sum_probs=118.9

Q ss_pred             ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc---eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH---SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~---~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~  212 (342)
                      ..+.+.++++|+..+|.+-  ....|.||.....+   ..++++.|...|+.|+|+|..+.|+|++.|..- .||....+
T Consensus        11 ~pitchAwn~drt~iAv~~--~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drna-yVw~~~~~   87 (361)
T KOG1523|consen   11 EPITCHAWNSDRTQIAVSP--NNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNA-YVWTQPSG   87 (361)
T ss_pred             CceeeeeecCCCceEEecc--CCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCc-cccccCCC
Confidence            4578889999999999887  57789999987654   678899999999999999999999999999885 69998443


Q ss_pred             -ee--EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccc-----cccccc
Q 019349          213 -TK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPE-----SVNEVL  284 (342)
Q Consensus       213 -~~--~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~  284 (342)
                       +-  .-.+.+  .....+++.|+|.+.   .||+||.-..|.||-++....        .++..+...     .....|
T Consensus        88 ~~WkptlvLlR--iNrAAt~V~WsP~en---kFAVgSgar~isVcy~E~ENd--------WWVsKhikkPirStv~sldW  154 (361)
T KOG1523|consen   88 GTWKPTLVLLR--INRAATCVKWSPKEN---KFAVGSGARLISVCYYEQEND--------WWVSKHIKKPIRSTVTSLDW  154 (361)
T ss_pred             CeeccceeEEE--eccceeeEeecCcCc---eEEeccCccEEEEEEEecccc--------eehhhhhCCccccceeeeec
Confidence             32  112222  133488999999998   999999999999998876543        222222221     234578


Q ss_pred             cccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          285 DPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      +|..              -.|++||.||+.|+|....+
T Consensus       155 hpnn--------------VLlaaGs~D~k~rVfSayIK  178 (361)
T KOG1523|consen  155 HPNN--------------VLLAAGSTDGKCRVFSAYIK  178 (361)
T ss_pred             cCCc--------------ceecccccCcceeEEEEeee
Confidence            8754              46888888999999986543

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=9e-09  Score=96.15  Aligned_cols=176  Identities=14%  Similarity=0.125  Sum_probs=113.6

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEE--EEE----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLV--IVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~--~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (342)
                      ...|.+||........-......+....|+|++..  .++    +..|++||+.+++.. .+.....  ...+..++|++
T Consensus       181 ~~~l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g--~~~~~~~SPDG  257 (435)
T PRK05137        181 IKRLAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG--MTFAPRFSPDG  257 (435)
T ss_pred             ceEEEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC--cccCcEECCCC
Confidence            35799999865544333344558899999988543  333    348999999887543 2322222  33456677888


Q ss_pred             cEEEEeCC-CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC-Cc-EEEEEEcCCCeeEEEeccCcCc
Q 019349          148 CFLAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYP  224 (342)
Q Consensus       148 ~~l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d-g~-~irlwd~~~~~~~~~~~~~~~~  224 (342)
                      ..|++... +....|.+||+.+++. ..+..+........|+|||+.|+..+.. |. -|.++|+..++. ..+..+  .
T Consensus       258 ~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~--~  333 (435)
T PRK05137        258 RKVVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFG--G  333 (435)
T ss_pred             CEEEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecC--C
Confidence            87765532 1234588889887754 4455566667789999999999988743 21 246788766543 333222  2


Q ss_pred             eeEEEEEEecCCCcccEEEEEeCC---CcEEEEecCCC
Q 019349          225 STIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFA  259 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd~~~~  259 (342)
                      ..+...+|+||++   +|+..+.+   ..|.+||++..
T Consensus       334 ~~~~~~~~SpdG~---~ia~~~~~~~~~~i~~~d~~~~  368 (435)
T PRK05137        334 GRYSTPVWSPRGD---LIAFTKQGGGQFSIGVMKPDGS  368 (435)
T ss_pred             CcccCeEECCCCC---EEEEEEcCCCceEEEEEECCCC
Confidence            3356688999999   88877653   35788887543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.27  E-value=4e-09  Score=96.73  Aligned_cols=259  Identities=14%  Similarity=0.100  Sum_probs=144.6

Q ss_pred             CCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCc
Q 019349           18 DNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTS   96 (342)
Q Consensus        18 d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~   96 (342)
                      ++..+++++.++ +..+|.++|+++.................+.+.+..       .++.|..||.++|+.+.+.....+
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~-------~~g~l~a~d~~tG~~~W~~~~~~~  176 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPLVANGLVVVRT-------NDGRLTALDAATGERLWTYSRVTP  176 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCEEECCEEEEEC-------CCCeEEEEEcCCCceeeEEccCCC
Confidence            344555665554 577777777766554332211111111223333333       378999999999998888765443


Q ss_pred             eEE------EEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCC--c---eEEEEeeCC--CccEEEEeCCCCccEEE
Q 019349           97 ILA------VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL--K---GLCAFSPSL--NACFLAVPASTTKGSVL  162 (342)
Q Consensus        97 v~~------i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~--~---~~~~~~~~~--~~~~l~~~~~~~~g~i~  162 (342)
                      ...      .....+.+++.. ++.+..+|..+++.+.+.......  .   ....+...|  .+..+.+.+  .+|.+.
T Consensus       177 ~~~~~~~~sp~~~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~--~~g~l~  254 (377)
T TIGR03300       177 ALTLRGSASPVIADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVS--YQGRVA  254 (377)
T ss_pred             ceeecCCCCCEEECCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEE--cCCEEE
Confidence            211      122234444444 679999999999877654321110  0   000000001  122444444  478999


Q ss_pred             EEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEE
Q 019349          163 VYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL  242 (342)
Q Consensus       163 iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l  242 (342)
                      .||..+++.+-.... .. .....  .++..|..++.||.+ ..+|..+|+.+.+...-. .....+...  .+.   .|
T Consensus       255 a~d~~tG~~~W~~~~-~~-~~~p~--~~~~~vyv~~~~G~l-~~~d~~tG~~~W~~~~~~-~~~~ssp~i--~g~---~l  323 (377)
T TIGR03300       255 ALDLRSGRVLWKRDA-SS-YQGPA--VDDNRLYVTDADGVV-VALDRRSGSELWKNDELK-YRQLTAPAV--VGG---YL  323 (377)
T ss_pred             EEECCCCcEEEeecc-CC-ccCce--EeCCEEEEECCCCeE-EEEECCCCcEEEcccccc-CCccccCEE--ECC---EE
Confidence            999999987655442 11 11222  246778888889985 699999998876653211 111222222  244   78


Q ss_pred             EEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349          243 VATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       243 ~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                      ++++.+|.|+++|.++++..-+.+        ....   .++..          +.. -++.|++++.||.|+.|.
T Consensus       324 ~~~~~~G~l~~~d~~tG~~~~~~~--------~~~~---~~~~s----------p~~-~~~~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       324 VVGDFEGYLHWLSREDGSFVARLK--------TDGS---GIASP----------PVV-VGDGLLVQTRDGDLYAFR  377 (377)
T ss_pred             EEEeCCCEEEEEECCCCCEEEEEE--------cCCC---ccccC----------CEE-ECCEEEEEeCCceEEEeC
Confidence            999999999999987765422100        0000   01111          001 126799999999999873

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.24  E-value=6.3e-09  Score=93.93  Aligned_cols=238  Identities=12%  Similarity=0.181  Sum_probs=145.0

Q ss_pred             EEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCC----CCCCeEEEEECCCCc
Q 019349           11 FFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS----LSPRRLCLFNTTTGT   86 (342)
Q Consensus        11 ~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~----~~d~~i~iwd~~~~~   86 (342)
                      +.+.|||-|+||++=...|+.+|--.+...+.......+..+.+.+..+++++-+......    .....++|||+.+|.
T Consensus       214 tyv~wSP~GTYL~t~Hk~GI~lWGG~~f~r~~RF~Hp~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~  293 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQGIALWGGESFDRIQRFYHPGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGL  293 (698)
T ss_pred             eeEEecCCceEEEEEeccceeeecCccHHHHHhccCCCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccc
Confidence            5789999999999999999999987776554444446788889988889988776532221    133789999999999


Q ss_pred             EEEEEecC---CceEE-EEEcCCeEEE--EECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC----
Q 019349           87 ALRELNFL---TSILA-VRLNKKRLVI--VLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST----  156 (342)
Q Consensus        87 ~~~~~~~~---~~v~~-i~~~~~~~~~--~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  156 (342)
                      ....+...   ..+.. +.|+.+.-++  ...+.|.||+..+..++..-  .-+..++-.++++|.+..||+=.-.    
T Consensus       294 lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisIyEtpsf~lld~K--slki~gIr~FswsP~~~llAYwtpe~~~~  371 (698)
T KOG2314|consen  294 LKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISIYETPSFMLLDKK--SLKISGIRDFSWSPTSNLLAYWTPETNNI  371 (698)
T ss_pred             hhcceeccCCCccccceEEeccCCceeEEeccceEEEEecCceeeeccc--ccCCccccCcccCCCcceEEEEcccccCC
Confidence            88877652   12222 3455443333  34788999988764333211  1123345555555555555432100    


Q ss_pred             ----------Ccc-----------------------------------------EEEEEEccCCc-eeEEEecccCCeeE
Q 019349          157 ----------TKG-----------------------------------------SVLVYNVMELH-SHCEIDAHQAPLAA  184 (342)
Q Consensus       157 ----------~~g-----------------------------------------~i~iwd~~~~~-~~~~~~~h~~~v~~  184 (342)
                                ...                                         .+.|+.++... ++..+ .-...|..
T Consensus       372 parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~v-elke~vi~  450 (698)
T KOG2314|consen  372 PARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVV-ELKESVIA  450 (698)
T ss_pred             cceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceee-ecchheee
Confidence                      000                                         11112111111 11111 12345777


Q ss_pred             EEECCCCCEEEEEeCC--CcEEEEEEcCC-C---eeEEEeccCcCceeEEEEEEecCCCcccEEEEEe---CCCcEEEEe
Q 019349          185 IVLSSNGMYIATASEQ--GTIIRVFLVSE-A---TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS---SSGSLHVFS  255 (342)
Q Consensus       185 i~~s~dg~~lat~s~d--g~~irlwd~~~-~---~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s---~dg~i~vwd  255 (342)
                      .+|-|.|+.+++-+..  ...++++-+++ .   .++.++..    ...+.+.|+|.|+   +++++.   ..|.+.++|
T Consensus       451 FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~---fvvva~l~s~~g~l~F~D  523 (698)
T KOG2314|consen  451 FAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGR---FVVVAALVSRRGDLEFYD  523 (698)
T ss_pred             eeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCc---EEEEEEecccccceEEEe
Confidence            8899999988776532  23357887763 2   23333322    2367899999999   777764   468899999


Q ss_pred             cCC
Q 019349          256 PGF  258 (342)
Q Consensus       256 ~~~  258 (342)
                      ...
T Consensus       524 ~~~  526 (698)
T KOG2314|consen  524 TDY  526 (698)
T ss_pred             cch
Confidence            875

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=9.9e-09  Score=95.85  Aligned_cols=216  Identities=14%  Similarity=0.092  Sum_probs=137.0

Q ss_pred             EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeE-
Q 019349           30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL-  107 (342)
Q Consensus        30 ~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~-  107 (342)
                      +.++|.+..... ...+...+....+.++++.+++++...    .+..|.+||+.+++...-..++..+....|+|++. 
T Consensus       184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~----g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYAN----GRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecC----CCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence            566676554332 233345677778888999888886421    25789999999887654344555677888988763 


Q ss_pred             -EEEE--CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC-CCccEEEEEEccCCceeEEEecccCC
Q 019349          108 -VIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAP  181 (342)
Q Consensus       108 -~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~  181 (342)
                       ++..  ++  .|++||+.+++.. .+..+..  ......++||+..+++.+. .....|.+||+..++. ..+..+...
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~--~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~  335 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPA--IDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGR  335 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceE-EccCCCC--ccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCc
Confidence             3333  33  6888899877543 3322222  2334566778888877652 1124688888776544 344444555


Q ss_pred             eeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC------CcEEE
Q 019349          182 LAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS------GSLHV  253 (342)
Q Consensus       182 v~~i~~s~dg~~lat~s~dg--~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d------g~i~v  253 (342)
                      +....|+|||++|+..+.++  .-|.+||+..+.. ..+..+   ..+...+|+||++   +|+..+.+      ..+++
T Consensus       336 ~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~-~~lt~~---~~~~~p~~spDG~---~i~~~~~~~~~~~~~~L~~  408 (435)
T PRK05137        336 YSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE-RILTSG---FLVEGPTWAPNGR---VIMFFRQTPGSGGAPKLYT  408 (435)
T ss_pred             ccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce-EeccCC---CCCCCCeECCCCC---EEEEEEccCCCCCcceEEE
Confidence            67789999999999876543  2356888765442 333222   2356789999999   77766543      25777


Q ss_pred             EecCCCC
Q 019349          254 FSPGFAI  260 (342)
Q Consensus       254 wd~~~~~  260 (342)
                      +|++...
T Consensus       409 ~dl~g~~  415 (435)
T PRK05137        409 VDLTGRN  415 (435)
T ss_pred             EECCCCc
Confidence            7776543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.24  E-value=1.2e-07  Score=85.71  Aligned_cols=273  Identities=14%  Similarity=0.111  Sum_probs=159.0

Q ss_pred             CcEEEEeC--CCCcEEEEE---eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC--c--EEEEEe-cCCce
Q 019349           28 DGFKIFDS--STGRLCYER---AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG--T--ALRELN-FLTSI   97 (342)
Q Consensus        28 ~g~~v~d~--~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~--~--~~~~~~-~~~~v   97 (342)
                      +++.+|++  +++++....   ....-..+.+.++.+.+..+....   ...+.|..|++...  +  .+.+.. .....
T Consensus        13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~---~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p   89 (345)
T PF10282_consen   13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGS---GDSGGVSSYRIDPDTGTLTLLNSVPSGGSSP   89 (345)
T ss_dssp             TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTS---STTTEEEEEEEETTTTEEEEEEEEEESSSCE
T ss_pred             CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccc---cCCCCEEEEEECCCcceeEEeeeeccCCCCc
Confidence            46777665  666554322   223444566666777766665421   13678888887653  3  233343 33456


Q ss_pred             EEEEEcCC--eEEEEE--CCeEEEEECCC-CceeeE---EeC--------CCCCceEEEEeeCCCccEEEEeCCCCccEE
Q 019349           98 LAVRLNKK--RLVIVL--REKTYIYDANT-LAILDT---IDT--------VPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (342)
Q Consensus        98 ~~i~~~~~--~~~~~~--d~~i~i~d~~~-~~~~~~---~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i  161 (342)
                      ..++++++  .++++.  ++.+.++++.. +.+...   +..        .......-++..+|++++++++.. ....|
T Consensus        90 ~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-G~D~v  168 (345)
T PF10282_consen   90 CHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-GADRV  168 (345)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-TTTEE
T ss_pred             EEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-CCCEE
Confidence            67888665  455555  78999999976 433322   110        011223456677888888887765 45689


Q ss_pred             EEEEccCCc--e--eEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC--CCee--EEEec---cCcCc-eeEE
Q 019349          162 LVYNVMELH--S--HCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS--EATK--SYSFR---RGTYP-STIF  228 (342)
Q Consensus       162 ~iwd~~~~~--~--~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~--~~~~--~~~~~---~~~~~-~~v~  228 (342)
                      .+|++....  .  ...+. ......+.++|+|||+++....+....|.++++.  +++.  +..+.   .+... ....
T Consensus       169 ~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  248 (345)
T PF10282_consen  169 YVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPA  248 (345)
T ss_dssp             EEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEE
T ss_pred             EEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCce
Confidence            999997654  2  22332 2345678999999999998887766656799987  4432  22221   11111 1367


Q ss_pred             EEEEecCCCcccEEEEEe-CCCcEEEEecCCCC-CCCCCCCccccccccccccccccccccccceeeeccCCCccccEEE
Q 019349          229 SLSFGQSMQFQDILVATS-SSGSLHVFSPGFAI-NQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVS  306 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  306 (342)
                      .|+++||++   +|.++. ..++|.+|+++... ....       +..        +.. .+....  .+.+.+++++|+
T Consensus       249 ~i~ispdg~---~lyvsnr~~~sI~vf~~d~~~g~l~~-------~~~--------~~~-~G~~Pr--~~~~s~~g~~l~  307 (345)
T PF10282_consen  249 EIAISPDGR---FLYVSNRGSNSISVFDLDPATGTLTL-------VQT--------VPT-GGKFPR--HFAFSPDGRYLY  307 (345)
T ss_dssp             EEEE-TTSS---EEEEEECTTTEEEEEEECTTTTTEEE-------EEE--------EEE-SSSSEE--EEEE-TTSSEEE
T ss_pred             eEEEecCCC---EEEEEeccCCEEEEEEEecCCCceEE-------EEE--------EeC-CCCCcc--EEEEeCCCCEEE
Confidence            899999999   666654 57789999995321 1110       000        000 010011  223356668899


Q ss_pred             EEEe-CCcEEEEEEecCCCC
Q 019349          307 VITY-NGYFVEYIFSINNCC  325 (342)
Q Consensus       307 ~~~~-dg~v~~~~~~~~~~~  325 (342)
                      +++. ++.|.+|+++++.+.
T Consensus       308 Va~~~s~~v~vf~~d~~tG~  327 (345)
T PF10282_consen  308 VANQDSNTVSVFDIDPDTGK  327 (345)
T ss_dssp             EEETTTTEEEEEEEETTTTE
T ss_pred             EEecCCCeEEEEEEeCCCCc
Confidence            8885 678999999987765

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.23  E-value=5e-10  Score=107.50  Aligned_cols=235  Identities=15%  Similarity=0.129  Sum_probs=162.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEE--------Ee--------eCCEEEEEE--------------
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE--------RA--------VGAFSIVEM--------------   54 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~--------~~--------~~~~~~~~~--------------   54 (342)
                      ++-.++++.++-.  .+|.+|..--+.+||+..+.++..        .|        .+...+...              
T Consensus         5 s~~~~l~~~~~~~--~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~l~~~~~v~~~~~~~v~~~~~~~~~   82 (967)
T KOG0974|consen    5 SSLGPLNLPQLVS--DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVKLLSGKIVTCAKSDEVYVKEASNQI   82 (967)
T ss_pred             cccccccchhhcc--ceeeecCCCceEEeeCCchhHhhhhhhhcccccccccccceeccceEEEEEeecceeecchhhhh
Confidence            4445667777766  788888877899999887743211        11        000000000              


Q ss_pred             -------------cCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCce-----EEEEEcCCeEEEEE---CC
Q 019349           55 -------------LYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI-----LAVRLNKKRLVIVL---RE  113 (342)
Q Consensus        55 -------------~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v-----~~i~~~~~~~~~~~---d~  113 (342)
                                   .+....+++..       .++.+-+||.+.+.....+..+...     .-+-.+.+.+.+++   -+
T Consensus        83 ~~~~s~wi~g~~l~~e~k~i~l~~-------~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~  155 (967)
T KOG0974|consen   83 IERFSDWIFGAKLFEENKKIALVT-------SRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFG  155 (967)
T ss_pred             hhhccccccccchhhhcceEEEEE-------cCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccc
Confidence                         01112334444       3788999998888777776655422     22233566666655   68


Q ss_pred             eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeE-EEecccCCeeEEEECCCCC
Q 019349          114 KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC-EIDAHQAPLAAIVLSSNGM  192 (342)
Q Consensus       114 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~-~~~~h~~~v~~i~~s~dg~  192 (342)
                      .|.+|+..-...-..+.  .+...++.+..+-++.++++.+  .|.++++|++.+.+... +.-+|...|..+.|.|+  
T Consensus       156 ~iivW~~~~dn~p~~l~--GHeG~iF~i~~s~dg~~i~s~S--dDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--  229 (967)
T KOG0974|consen  156 EIIVWKPHEDNKPIRLK--GHEGSIFSIVTSLDGRYIASVS--DDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--  229 (967)
T ss_pred             cEEEEeccccCCcceec--ccCCceEEEEEccCCcEEEEEe--cCcceeeeecccccccCcccccccceeEEEEeccc--
Confidence            99999986222111223  3344678888888999999998  69999999999988765 55689999999999998  


Q ss_pred             EEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          193 YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       193 ~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      +++|+++|.+. |+|+.. ++.+..+.. +....+..++..++..   .+.+++.|+++++|++....
T Consensus       230 ~i~t~gedctc-rvW~~~-~~~l~~y~~-h~g~~iw~~~~~~~~~---~~vT~g~Ds~lk~~~l~~r~  291 (967)
T KOG0974|consen  230 RIITVGEDCTC-RVWGVN-GTQLEVYDE-HSGKGIWKIAVPIGVI---IKVTGGNDSTLKLWDLNGRG  291 (967)
T ss_pred             eeEEeccceEE-EEEecc-cceehhhhh-hhhcceeEEEEcCCce---EEEeeccCcchhhhhhhccc
Confidence            99999999985 999764 555556643 3344599999999988   99999999999999986543

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.22  E-value=2.8e-08  Score=91.17  Aligned_cols=258  Identities=14%  Similarity=0.116  Sum_probs=151.2

Q ss_pred             CCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCce
Q 019349           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI   97 (342)
Q Consensus        19 ~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v   97 (342)
                      +..+.+++.++ +.-+|..+|+++.....+...........+.+. ++.      .++.+..+|..+|+.+.+......+
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~-v~~------~~g~l~ald~~tG~~~W~~~~~~~~  137 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGADGGLVF-VGT------EKGEVIALDAEDGKELWRAKLSSEV  137 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEEcCCEEE-EEc------CCCEEEEEECCCCcEeeeeccCcee
Confidence            45677777665 688999999887665433211111122334444 333      3789999999999999888766654


Q ss_pred             EEE-EEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceE---EEEeeCCCccEEEEeCCCCccEEEEEEccCCcee
Q 019349           98 LAV-RLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL---CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH  172 (342)
Q Consensus        98 ~~i-~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~  172 (342)
                      .+. ....+.+++.. ++.++.||..+++.+.+..........   ...... ++ .++++.  .+|.+..+|.++++.+
T Consensus       138 ~~~p~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~-~~-~v~~~~--~~g~v~ald~~tG~~~  213 (377)
T TIGR03300       138 LSPPLVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA-DG-GVLVGF--AGGKLVALDLQTGQPL  213 (377)
T ss_pred             ecCCEEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE-CC-EEEEEC--CCCEEEEEEccCCCEe
Confidence            332 22345555544 789999999999888776543321110   000011 12 344444  4789999999998865


Q ss_pred             EEEeccc----C---CeeEEEECC--CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEE
Q 019349          173 CEIDAHQ----A---PLAAIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV  243 (342)
Q Consensus       173 ~~~~~h~----~---~v~~i~~s~--dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~  243 (342)
                      -......    .   .+..+.-+|  .+..+..++.+|.+ ..||..+|+.+.......    ....+.  ++.   .+.
T Consensus       214 W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l-~a~d~~tG~~~W~~~~~~----~~~p~~--~~~---~vy  283 (377)
T TIGR03300       214 WEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRV-AALDLRSGRVLWKRDASS----YQGPAV--DDN---RLY  283 (377)
T ss_pred             eeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEE-EEEECCCCcEEEeeccCC----ccCceE--eCC---EEE
Confidence            4332110    0   000111111  34577888888875 699999999877664211    122222  344   688


Q ss_pred             EEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          244 ATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       244 ~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                      +++.+|.++.+|..+++..-+..   . +    +..  ..-+|            ...++.|++++.||.++.++.
T Consensus       284 v~~~~G~l~~~d~~tG~~~W~~~---~-~----~~~--~~ssp------------~i~g~~l~~~~~~G~l~~~d~  337 (377)
T TIGR03300       284 VTDADGVVVALDRRSGSELWKND---E-L----KYR--QLTAP------------AVVGGYLVVGDFEGYLHWLSR  337 (377)
T ss_pred             EECCCCeEEEEECCCCcEEEccc---c-c----cCC--ccccC------------EEECCEEEEEeCCCEEEEEEC
Confidence            88999999999998765421100   0 0    000  00011            012368999999999888753

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.22  E-value=2.3e-08  Score=93.08  Aligned_cols=212  Identities=15%  Similarity=0.084  Sum_probs=126.0

Q ss_pred             EEEEeCCCCcE-EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--
Q 019349           30 FKIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--  106 (342)
Q Consensus        30 ~~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--  106 (342)
                      +.++|.+.... ........+....+.++++.+++++...    ....|.+||+.+++.......+..+....|+|+.  
T Consensus       178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~----~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  253 (427)
T PRK02889        178 LQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFES----KKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRT  253 (427)
T ss_pred             EEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            45556543321 1222334555667888888888876421    2356999999988765444455566778899885  


Q ss_pred             EEEEE--CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEc--cCCceeEEEecccC
Q 019349          107 LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV--MELHSHCEIDAHQA  180 (342)
Q Consensus       107 ~~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~--~~~~~~~~~~~h~~  180 (342)
                      +++..  ++  .|+++|+..+. ...+..+..  .....+++||+..+++.+. ..|...||.+  .+++. ..+..+..
T Consensus       254 la~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~--~~~~~~wSpDG~~l~f~s~-~~g~~~Iy~~~~~~g~~-~~lt~~g~  328 (427)
T PRK02889        254 LAVALSRDGNSQIYTVNADGSG-LRRLTQSSG--IDTEPFFSPDGRSIYFTSD-RGGAPQIYRMPASGGAA-QRVTFTGS  328 (427)
T ss_pred             EEEEEccCCCceEEEEECCCCC-cEECCCCCC--CCcCeEEcCCCCEEEEEec-CCCCcEEEEEECCCCce-EEEecCCC
Confidence            33333  44  45556665544 333322221  2234467788888887653 3466666654  44432 22222223


Q ss_pred             CeeEEEECCCCCEEEEEeCCCc--EEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC-c--EEEEe
Q 019349          181 PLAAIVLSSNGMYIATASEQGT--IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG-S--LHVFS  255 (342)
Q Consensus       181 ~v~~i~~s~dg~~lat~s~dg~--~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg-~--i~vwd  255 (342)
                      .....+|||||++|+..+.++.  .|.+||+.+++.. .+..+   ......+|+||++   +|+.++.++ .  +++.+
T Consensus       329 ~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~---~~~~~p~~spdg~---~l~~~~~~~g~~~l~~~~  401 (427)
T PRK02889        329 YNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDT---TRDESPSFAPNGR---YILYATQQGGRSVLAAVS  401 (427)
T ss_pred             CcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCC---CCccCceECCCCC---EEEEEEecCCCEEEEEEE
Confidence            3446789999999998876542  3579999887643 33222   1235679999999   777776544 3  55555


Q ss_pred             cC
Q 019349          256 PG  257 (342)
Q Consensus       256 ~~  257 (342)
                      +.
T Consensus       402 ~~  403 (427)
T PRK02889        402 SD  403 (427)
T ss_pred             CC
Confidence            53

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.19  E-value=1.6e-08  Score=91.93  Aligned_cols=184  Identities=17%  Similarity=0.226  Sum_probs=131.2

Q ss_pred             cCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee-----CCEEEEEEc----C---------------CCCeEEEEcCCCCC
Q 019349           16 NQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-----GAFSIVEML----Y---------------SSSLLAIVGAGEQP   70 (342)
Q Consensus        16 s~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~-----~~~~~~~~~----~---------------~~~~~~~~~~g~~~   70 (342)
                      .|-..++|..+.+| +|+||...+++..+...     +....+.|.    .               ....+++.|.    
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt----   77 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT----   77 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec----
Confidence            45667899888888 59999988876544321     222222221    0               1112334444    


Q ss_pred             CCCCCeEEEEECCCCcEEEEEe---cCCceEEEEEcCCeEE--EEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349           71 SLSPRRLCLFNTTTGTALRELN---FLTSILAVRLNKKRLV--IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS  144 (342)
Q Consensus        71 ~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~i~~~~~~~~--~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  144 (342)
                        ..+.|.+++...|+....+.   +.+.|.++..+.+.-.  .+. |.++..|++...+.++.+.....  ....+++.
T Consensus        78 --~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~--~~~sl~is  153 (541)
T KOG4547|consen   78 --PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP--LVSSLCIS  153 (541)
T ss_pred             --CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCC--ccceEEEc
Confidence              37899999999998877775   4568888887665332  233 77999999999988888765433  45566777


Q ss_pred             CCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCC-----CCEEEEEeCCCcEEEEEEcCC
Q 019349          145 LNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSN-----GMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       145 ~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~d-----g~~lat~s~dg~~irlwd~~~  211 (342)
                      ||+..+++++    ++|++||+++.+.+.+|.+|.++|+++.|-.+     |.++.++..-.+.|-+|-+..
T Consensus       154 ~D~~~l~~as----~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  154 PDGKILLTAS----RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCCEEEecc----ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            8888988876    67999999999999999999999999999877     777777654445566887754

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.16  E-value=1.2e-10  Score=109.17  Aligned_cols=236  Identities=11%  Similarity=0.067  Sum_probs=146.6

Q ss_pred             CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC-CceEEEEEcCCeEEEEE---CCeEEEEECCCC
Q 019349           48 AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTL  123 (342)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~  123 (342)
                      .+.++.+...+.+++..+       +|..++||...++.++.+...+ +.|++++.+.+.+++++   |..|++|-+.++
T Consensus       192 aVyca~fDrtg~~Iitgs-------dd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~  264 (1113)
T KOG0644|consen  192 AVYCAIFDRTGRYIITGS-------DDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG  264 (1113)
T ss_pred             heeeeeeccccceEeecC-------ccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCC
Confidence            355555555555554443       5999999999999999888654 48999999888777655   678999999999


Q ss_pred             ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE----ec-ccCCeeE--------------
Q 019349          124 AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI----DA-HQAPLAA--------------  184 (342)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~----~~-h~~~v~~--------------  184 (342)
                      .++..+..|..  .+.+++++|-.    +.+  .||++++||.+ ..+....    +. -..-+.+              
T Consensus       265 ~pvsvLrghtg--avtaiafsP~~----sss--~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  265 APVSVLRGHTG--AVTAIAFSPRA----SSS--DDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             chHHHHhcccc--ceeeeccCccc----cCC--CCCceEecccc-ccccccCCCCCCcccccceeeeecccccccccccc
Confidence            98888877665  45666666532    233  69999999986 1110000    00 0111222              


Q ss_pred             ------------EEECCCCCEEEEEe-----------CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349          185 ------------IVLSSNGMYIATAS-----------EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI  241 (342)
Q Consensus       185 ------------i~~s~dg~~lat~s-----------~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~  241 (342)
                                  +++...+-.+++.+           .+-. +.+|++.+|++++.+..  +...++.|.++|-+.  ..
T Consensus       336 ~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~-~~vwnl~~g~l~H~l~g--hsd~~yvLd~Hpfn~--ri  410 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHR-LCVWNLYTGQLLHNLMG--HSDEVYVLDVHPFNP--RI  410 (1113)
T ss_pred             CCcccccchhhHhhhhccceEEEeccccccccceeeeeeeE-eeeeecccchhhhhhcc--cccceeeeeecCCCc--Hh
Confidence                        22222222222222           2222 46788888877766543  345688899999776  25


Q ss_pred             EEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          242 LVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       242 l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      ..+++.||...|||+-.+.+.+.....       ....+.+-+++              ++..++..-.-|.++|+....
T Consensus       411 ~msag~dgst~iwdi~eg~pik~y~~g-------h~kl~d~kFSq--------------dgts~~lsd~hgql~i~g~gq  469 (1113)
T KOG0644|consen  411 AMSAGYDGSTIIWDIWEGIPIKHYFIG-------HGKLVDGKFSQ--------------DGTSIALSDDHGQLYILGTGQ  469 (1113)
T ss_pred             hhhccCCCceEeeecccCCcceeeecc-------cceeeccccCC--------------CCceEecCCCCCceEEeccCC
Confidence            557789999999999887765532100       11122233333              335566566667777776655


Q ss_pred             CCCC
Q 019349          322 NNCC  325 (342)
Q Consensus       322 ~~~~  325 (342)
                      .+++
T Consensus       470 s~s~  473 (1113)
T KOG0644|consen  470 SKSQ  473 (1113)
T ss_pred             Cccc
Confidence            4443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.15  E-value=3.4e-08  Score=91.82  Aligned_cols=176  Identities=14%  Similarity=0.054  Sum_probs=112.2

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEE--E--C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIV--L--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~--~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (342)
                      ...|.++|...+....-......+....|+++...++  .  +  ..|++||+.+++..... ....  ...+.+++|++
T Consensus       169 ~~~l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~-~~~~--~~~~~~~spDg  245 (417)
T TIGR02800       169 RYELQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVA-SFPG--MNGAPAFSPDG  245 (417)
T ss_pred             cceEEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEee-cCCC--CccceEECCCC
Confidence            4568888876444333333444688888988764433  2  2  47999999887543322 2221  23345667788


Q ss_pred             cEEEEeCC-CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC-c-EEEEEEcCCCeeEEEeccCcCc
Q 019349          148 CFLAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG-T-IIRVFLVSEATKSYSFRRGTYP  224 (342)
Q Consensus       148 ~~l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg-~-~irlwd~~~~~~~~~~~~~~~~  224 (342)
                      ..|++... +.+..|.+||+.+++. ..+..|........|+|||++|+..+..+ . -|.++|+.+++.. .+...  .
T Consensus       246 ~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~--~  321 (417)
T TIGR02800       246 SKLAVSLSKDGNPDIYVMDLDGKQL-TRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFR--G  321 (417)
T ss_pred             CEEEEEECCCCCccEEEEECCCCCE-EECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--C
Confidence            77765432 1234688999887654 34444555556789999999998777543 2 2457788766542 33211  2


Q ss_pred             eeEEEEEEecCCCcccEEEEEeCCC---cEEEEecCCC
Q 019349          225 STIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGFA  259 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~s~dg---~i~vwd~~~~  259 (342)
                      ......+|+||++   +|+.++.++   .|.+||+...
T Consensus       322 ~~~~~~~~spdg~---~i~~~~~~~~~~~i~~~d~~~~  356 (417)
T TIGR02800       322 GYNASPSWSPDGD---LIAFVHREGGGFNIAVMDLDGG  356 (417)
T ss_pred             CCccCeEECCCCC---EEEEEEccCCceEEEEEeCCCC
Confidence            3356789999999   888888776   7888888764

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.14  E-value=2.2e-07  Score=95.00  Aligned_cols=236  Identities=13%  Similarity=0.082  Sum_probs=140.6

Q ss_pred             EEEEEcCCCCEEEEE-cCCc-EEEEeCCCCcEEEEEee-C---------------CEEEEEEcCCCCeEEEEcCCCCCCC
Q 019349           11 FFVSFNQDNSGFALS-TKDG-FKIFDSSTGRLCYERAV-G---------------AFSIVEMLYSSSLLAIVGAGEQPSL   72 (342)
Q Consensus        11 ~~l~fs~d~~~la~g-~~~g-~~v~d~~~~~~~~~~~~-~---------------~~~~~~~~~~~~~~~~~~~g~~~~~   72 (342)
                      ..+++++++..|.++ +.+. +++||.+.. .+..... +               .-.-+.+..+.+.+.++..      
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt------  643 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADT------  643 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeC------
Confidence            467898865544444 4444 789997643 3322111 1               0112333334455555443      


Q ss_pred             CCCeEEEEECCCCcEEEEEec------------------CCceEEEEEcC-C-eEEEEE--CCeEEEEECCCCceeeEEe
Q 019349           73 SPRRLCLFNTTTGTALRELNF------------------LTSILAVRLNK-K-RLVIVL--REKTYIYDANTLAILDTID  130 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~------------------~~~v~~i~~~~-~-~~~~~~--d~~i~i~d~~~~~~~~~~~  130 (342)
                      ..+.|+.+|..++.. .++..                  -....++++++ + .++++.  +++|++||..++... .+.
T Consensus       644 ~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~  721 (1057)
T PLN02919        644 ENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFS  721 (1057)
T ss_pred             CCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEe
Confidence            357899999877543 22211                  01235788887 3 444544  569999999876432 221


Q ss_pred             CCC-------------CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec--------------------
Q 019349          131 TVP-------------NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA--------------------  177 (342)
Q Consensus       131 ~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~--------------------  177 (342)
                      ...             .......++.++++..|.++.. .++.|++||+.++.......+                    
T Consensus       722 G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs-~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~  800 (1057)
T PLN02919        722 GDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADS-ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSE  800 (1057)
T ss_pred             cCCccccCCCCccccccccCccEEEEeCCCCEEEEEEC-CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhh
Confidence            100             0011234556666665555554 578999999987653211100                    


Q ss_pred             -ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc-----------CceeEEEEEEecCCCcccEEEEE
Q 019349          178 -HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-----------YPSTIFSLSFGQSMQFQDILVAT  245 (342)
Q Consensus       178 -h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~-----------~~~~v~~l~fs~d~~~~~~l~~~  245 (342)
                       .-.....|+++++|+.+++-+.+++ |++||..++........+.           .-.....|+++++|+   ++++-
T Consensus       801 ~~l~~P~Gvavd~dG~LYVADs~N~r-IrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~---lyVaD  876 (1057)
T PLN02919        801 VLLQHPLGVLCAKDGQIYVADSYNHK-IKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR---LFVAD  876 (1057)
T ss_pred             hhccCCceeeEeCCCcEEEEECCCCE-EEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC---EEEEE
Confidence             0112468999999998888877776 6999998876543221110           011367899999998   88888


Q ss_pred             eCCCcEEEEecCCCC
Q 019349          246 SSSGSLHVFSPGFAI  260 (342)
Q Consensus       246 s~dg~i~vwd~~~~~  260 (342)
                      +.+++|++||+++..
T Consensus       877 t~Nn~Irvid~~~~~  891 (1057)
T PLN02919        877 TNNSLIRYLDLNKGE  891 (1057)
T ss_pred             CCCCEEEEEECCCCc
Confidence            999999999998764

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.13  E-value=2e-09  Score=91.31  Aligned_cols=187  Identities=16%  Similarity=0.189  Sum_probs=132.1

Q ss_pred             EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEECCCCcee
Q 019349           51 IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAIL  126 (342)
Q Consensus        51 ~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~  126 (342)
                      ...+.+.+++++.++.        -.+.|=|..+-+...-+..-..|.-|.|..+.  ++.+.  ++.|.+|++...+-.
T Consensus        13 ~c~fSp~g~yiAs~~~--------yrlviRd~~tlq~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSR--------YRLVIRDSETLQLHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             ceeECCCCCeeeeeee--------eEEEEeccchhhHHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence            3567788889888764        36777776665544333333456666665543  22222  779999999887766


Q ss_pred             eEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC-------
Q 019349          127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE-------  199 (342)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~-------  199 (342)
                      .+++.  .+.++.+.+++|+++.+...+. -+-.|.+|.+.+.+.. .++-.+..+..++|+|||++.|.++.       
T Consensus        85 ckIde--g~agls~~~WSPdgrhiL~tse-F~lriTVWSL~t~~~~-~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv  160 (447)
T KOG4497|consen   85 CKIDE--GQAGLSSISWSPDGRHILLTSE-FDLRITVWSLNTQKGY-LLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYV  160 (447)
T ss_pred             EEecc--CCCcceeeeECCCcceEeeeec-ceeEEEEEEeccceeE-EecccccCceeEEECCCCceeeeeecccHHHHH
Confidence            66653  4567889999999977666554 6889999999886654 33434556788999999999988865       


Q ss_pred             ----------------------------CCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcE
Q 019349          200 ----------------------------QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL  251 (342)
Q Consensus       200 ----------------------------dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i  251 (342)
                                                  ||..+-+||.--..++..+.++   -.+..++|+|.++   +|++|+.|+.+
T Consensus       161 ~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~---lG~k~v~wsP~~q---flavGsyD~~l  234 (447)
T KOG4497|consen  161 QISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERG---LGLKFVEWSPCNQ---FLAVGSYDQML  234 (447)
T ss_pred             HHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeec---cceeEEEeccccc---eEEeeccchhh
Confidence                                        4556677876544454444332   2378899999999   99999999988


Q ss_pred             EEEe
Q 019349          252 HVFS  255 (342)
Q Consensus       252 ~vwd  255 (342)
                      +|-+
T Consensus       235 rvln  238 (447)
T KOG4497|consen  235 RVLN  238 (447)
T ss_pred             hhhc
Confidence            8765

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=99.11  E-value=1.7e-07  Score=80.11  Aligned_cols=211  Identities=17%  Similarity=0.179  Sum_probs=134.2

Q ss_pred             EEEEeCCCCcEEEEEeeCC-E--EEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEE-EEEcCC
Q 019349           30 FKIFDSSTGRLCYERAVGA-F--SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILA-VRLNKK  105 (342)
Q Consensus        30 ~~v~d~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~-i~~~~~  105 (342)
                      +..||..+|+.+....... .  .........+.+.+.+.       ++.|..||..+|+.+.+...+..+.. .....+
T Consensus         5 l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~   77 (238)
T PF13360_consen    5 LSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASG-------DGNLYALDAKTGKVLWRFDLPGPISGAPVVDGG   77 (238)
T ss_dssp             EEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEET-------TSEEEEEETTTSEEEEEEECSSCGGSGEEEETT
T ss_pred             EEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcC-------CCEEEEEECCCCCEEEEeeccccccceeeeccc
Confidence            5788888888776654311 1  11112224445544433       78999999999999999887654322 355677


Q ss_pred             eEEEEE-CCeEEEEECCCCceeeEE-eCCCCCc---eEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccC
Q 019349          106 RLVIVL-REKTYIYDANTLAILDTI-DTVPNLK---GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA  180 (342)
Q Consensus       106 ~~~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~  180 (342)
                      .+++.. ++.++.+|..+++.+... .......   ........  +..++++.  .+|.|..+|+++|+.+-....+..
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVD--GDRLYVGT--SSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEE--TTEEEEEE--TCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccccccccCceEe--cCEEEEEe--ccCcEEEEecCCCcEEEEeecCCC
Confidence            777776 789999999999998884 4331111   11122222  23444444  368999999999998877765442


Q ss_pred             C----------eeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc
Q 019349          181 P----------LAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS  250 (342)
Q Consensus       181 ~----------v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~  250 (342)
                      +          +..-.+..++ .+..++.+|.++.+ |+.+++.+.+..  . . .+..+ ...++.   .|++++.++.
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~--~-~-~~~~~-~~~~~~---~l~~~~~~~~  223 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP--I-S-GIYSL-PSVDGG---TLYVTSSDGR  223 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC--S-S--ECEC-EECCCT---EEEEEETTTE
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec--C-C-CccCC-ceeeCC---EEEEEeCCCE
Confidence            2          1222233345 77777778876666 999999765432  1 1 12221 345565   7888889999


Q ss_pred             EEEEecCCCCC
Q 019349          251 LHVFSPGFAIN  261 (342)
Q Consensus       251 i~vwd~~~~~~  261 (342)
                      |..||+++++.
T Consensus       224 l~~~d~~tG~~  234 (238)
T PF13360_consen  224 LYALDLKTGKV  234 (238)
T ss_dssp             EEEEETTTTEE
T ss_pred             EEEEECCCCCE
Confidence            99999988753

...

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.10  E-value=1.5e-09  Score=109.47  Aligned_cols=168  Identities=12%  Similarity=0.160  Sum_probs=120.2

Q ss_pred             CCCeEEEEECCCCcEEEEEecC--CceEEEEEcCCe--EEE-EECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349           73 SPRRLCLFNTTTGTALRELNFL--TSILAVRLNKKR--LVI-VLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~--~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (342)
                      .|+.+++|....++.+..+...  ..|..+.|+.++  +-+ ..||.+.+|... .+.....+.|.  .+...+.+-+  
T Consensus      2228 ~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchn--k~~~Df~Fi~-- 2302 (2439)
T KOG1064|consen 2228 QDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHN--KALSDFRFIG-- 2302 (2439)
T ss_pred             CCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC-CcceeccccCC--ccccceeeee--
Confidence            4999999999999988877643  467777776543  333 338999999987 44444444332  2333333322  


Q ss_pred             cEEEEeCCC-CccEEEEEEccCCc---eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349          148 CFLAVPAST-TKGSVLVYNVMELH---SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       148 ~~l~~~~~~-~~g~i~iwd~~~~~---~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~  223 (342)
                      ..++++|.. .++.+.+||..-..   .+.  .+|.+.++++++-|.-++|+|||.+|.+ ++||++..++++.++.   
T Consensus      2303 s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v-~l~D~rqrql~h~~~~--- 2376 (2439)
T KOG1064|consen 2303 SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEV-CLFDIRQRQLRHTFQA--- 2376 (2439)
T ss_pred             hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcE-EEeehHHHHHHHHhhh---
Confidence            355555532 46789999964322   333  7899999999999999999999999985 7999998887766632   


Q ss_pred             ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                              +. ...   +|++|+..|.|+||++......+
T Consensus      2377 --------~~-~~~---~f~~~ss~g~ikIw~~s~~~ll~ 2404 (2439)
T KOG1064|consen 2377 --------LD-TRE---YFVTGSSEGNIKIWRLSEFGLLH 2404 (2439)
T ss_pred             --------hh-hhh---eeeccCcccceEEEEccccchhh
Confidence                    33 334   89999999999999998775433

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.10  E-value=2.7e-08  Score=93.06  Aligned_cols=216  Identities=10%  Similarity=0.052  Sum_probs=127.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-Cc---EEEEeCCCCcEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTK-DG---FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~-~g---~~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ....+.+.+|||||+.|+..+. ++   +.+||+.+++...-.. .+......+.++++.++++....    ....|.++
T Consensus       216 ~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~----g~~~Iy~~  291 (448)
T PRK04792        216 SPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKD----GQPEIYVV  291 (448)
T ss_pred             CCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCC----CCeEEEEE
Confidence            3456788999999999876543 32   5777888876432221 22233457788888887764320    12358888


Q ss_pred             ECCCCcEEEEEecCCceEEEEEcCCe--EEEEEC----CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           81 NTTTGTALRELNFLTSILAVRLNKKR--LVIVLR----EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      |+.+++...-...........|+++.  ++..++    ..|+++|+.+++..+ +......  ....+++|++..+++.+
T Consensus       292 dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~--~~~~~~SpDG~~l~~~~  368 (448)
T PRK04792        292 DIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQ--NLGGSITPDGRSMIMVN  368 (448)
T ss_pred             ECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCC--CcCeeECCCCCEEEEEE
Confidence            99887654332333345667888774  444442    368888888776432 2211111  12235567777888765


Q ss_pred             CCCcc--EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC-c-EEEEEEcCCCeeEEEeccCcCceeEEEE
Q 019349          155 STTKG--SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG-T-IIRVFLVSEATKSYSFRRGTYPSTIFSL  230 (342)
Q Consensus       155 ~~~~g--~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg-~-~irlwd~~~~~~~~~~~~~~~~~~v~~l  230 (342)
                      . .++  .|.++|+.+++.. .+.... ......|+|||++|+..+.++ . .+.+++. +|.....+..+  .+.+...
T Consensus       369 ~-~~g~~~I~~~dl~~g~~~-~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~--~g~~~~p  442 (448)
T PRK04792        369 R-TNGKFNIARQDLETGAMQ-VLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAG--QGEVKSP  442 (448)
T ss_pred             e-cCCceEEEEEECCCCCeE-EccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCC--CCCcCCC
Confidence            4 344  4566788777643 232221 122447999999988876543 2 2456676 56555555322  3346677


Q ss_pred             EEec
Q 019349          231 SFGQ  234 (342)
Q Consensus       231 ~fs~  234 (342)
                      +|+|
T Consensus       443 ~Wsp  446 (448)
T PRK04792        443 AWSP  446 (448)
T ss_pred             ccCC
Confidence            8876

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.09  E-value=1.2e-06  Score=75.68  Aligned_cols=244  Identities=13%  Similarity=0.136  Sum_probs=147.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC----cEEEEeCC--CCcEEEEEe----eCCEEEEEEcCCCCeEEEEcCCCCCCCCCC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKD----GFKIFDSS--TGRLCYERA----VGAFSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~----g~~v~d~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (342)
                      ..+.++.|+|+|++++|.++-..    ++--|.++  +|++.+-.+    ..+-..+++..+..+++.+.-      ..+
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY------~~g  111 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANY------HSG  111 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEc------cCc
Confidence            34567899999999999877543    35555554  476654322    233356777777778776664      468


Q ss_pred             eEEEEECCC-CcE---EEEEecCCc----------eEEEEEcCCeEEEEE----CCeEEEEECCCCceeeEEeCC-CCCc
Q 019349           76 RLCLFNTTT-GTA---LRELNFLTS----------ILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDTV-PNLK  136 (342)
Q Consensus        76 ~i~iwd~~~-~~~---~~~~~~~~~----------v~~i~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~-~~~~  136 (342)
                      .|.++-++. |..   +..+.+...          +....+.|++.+++.    .++|.+|++.++++...-... ....
T Consensus       112 ~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~  191 (346)
T COG2706         112 SVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGA  191 (346)
T ss_pred             eEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCC
Confidence            899998865 332   233343333          677778887644433    579999999987654322111 1112


Q ss_pred             eEEEEeeCCCccEEEEeCCCCccEEEEEEccCC-c---eeEEE---ec---ccCCeeEEEECCCCCEEEEEeCCCcEEEE
Q 019349          137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-H---SHCEI---DA---HQAPLAAIVLSSNGMYIATASEQGTIIRV  206 (342)
Q Consensus       137 ~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-~---~~~~~---~~---h~~~v~~i~~s~dg~~lat~s~dg~~irl  206 (342)
                      +---+.++|++++..+..- -+++|.+|..... .   .++++   +.   -......|.+++||++|.++-.--..|-+
T Consensus       192 GPRHi~FHpn~k~aY~v~E-L~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         192 GPRHIVFHPNGKYAYLVNE-LNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CcceEEEcCCCcEEEEEec-cCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            2223344555555444433 5899999998763 2   22222   21   13456789999999999987543334567


Q ss_pred             EEcCCC-eeEEEeccCcCce-eEEEEEEecCCCcccEEEEEeCC-CcEEEEecCCC
Q 019349          207 FLVSEA-TKSYSFRRGTYPS-TIFSLSFGQSMQFQDILVATSSS-GSLHVFSPGFA  259 (342)
Q Consensus       207 wd~~~~-~~~~~~~~~~~~~-~v~~l~fs~d~~~~~~l~~~s~d-g~i~vwd~~~~  259 (342)
                      |.+... .++.........+ .-+...|+|+++   +|+++..+ .+|.+|.++..
T Consensus       271 f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~---~Liaa~q~sd~i~vf~~d~~  323 (346)
T COG2706         271 FSVDPDGGKLELVGITPTEGQFPRDFNINPSGR---FLIAANQKSDNITVFERDKE  323 (346)
T ss_pred             EEEcCCCCEEEEEEEeccCCcCCccceeCCCCC---EEEEEccCCCcEEEEEEcCC
Confidence            776532 2222221111111 256788999999   78777765 46999988654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.08  E-value=7.5e-08  Score=89.91  Aligned_cols=217  Identities=13%  Similarity=0.071  Sum_probs=128.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-Cc---EEEEeCCCCcEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTK-DG---FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~-~g---~~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .+...+.+.+|+|||+.|+..+. ++   +.+||+.+++...-.. .+......+.++++.+++.....    .+..|.+
T Consensus       196 ~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~----g~~~Iy~  271 (430)
T PRK00178        196 QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKD----GNPEIYV  271 (430)
T ss_pred             cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccC----CCceEEE
Confidence            34567889999999999876543 22   5778998885432222 22333467778888887654310    1347899


Q ss_pred             EECCCCcEEEEEecCCceEEEEEcCCe--EEEEEC----CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVLR----EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~d----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      ||+.+++...-...........|+++.  ++..++    ..|+++++.+++..+ +......  .....++|++..+++.
T Consensus       272 ~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~-lt~~~~~--~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        272 MDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER-VTFVGNY--NARPRLSADGKTLVMV  348 (430)
T ss_pred             EECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE-eecCCCC--ccceEECCCCCEEEEE
Confidence            999887654322233345556787763  444442    268888988776432 2221111  1223456777788877


Q ss_pred             CCCCcc--EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349          154 ASTTKG--SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFS  229 (342)
Q Consensus       154 ~~~~~g--~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg--~~irlwd~~~~~~~~~~~~~~~~~~v~~  229 (342)
                      .. .++  .|.+||+.+++.. .+.. ........|+|||++|+..+.++  ..+.++++. |.....+..  ..+.+..
T Consensus       349 ~~-~~~~~~l~~~dl~tg~~~-~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~-g~~~~~l~~--~~g~~~~  422 (430)
T PRK00178        349 HR-QDGNFHVAAQDLQRGSVR-ILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN-GRVRLPLPT--AQGEVRE  422 (430)
T ss_pred             Ec-cCCceEEEEEECCCCCEE-EccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEECcC--CCCCcCC
Confidence            53 233  5888999887643 2321 22223568999999998877653  224566764 443334432  2334666


Q ss_pred             EEEec
Q 019349          230 LSFGQ  234 (342)
Q Consensus       230 l~fs~  234 (342)
                      .+|+|
T Consensus       423 p~ws~  427 (430)
T PRK00178        423 PSWSP  427 (430)
T ss_pred             CccCC
Confidence            67776

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.06  E-value=3.2e-07  Score=85.67  Aligned_cols=175  Identities=14%  Similarity=0.038  Sum_probs=109.7

Q ss_pred             eEEEEECCCCcEEEEEecCCceEEEEEcCCeE--EEEE--C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccE
Q 019349           76 RLCLFNTTTGTALRELNFLTSILAVRLNKKRL--VIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (342)
Q Consensus        76 ~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
                      .|.++|...+....-......+....|+|++.  +...  +  ..|++||+.+++... +.....  ......++|++..
T Consensus       180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g--~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEG--LNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCC--CcCCeEECCCCCE
Confidence            58888887655433334556788889988753  3333  2  379999998875432 221111  1234567788888


Q ss_pred             EEEeCC-CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC-Cc-EEEEEEcCCCeeEEEeccCcCcee
Q 019349          150 LAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYPST  226 (342)
Q Consensus       150 l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d-g~-~irlwd~~~~~~~~~~~~~~~~~~  226 (342)
                      |++... +.+..|.+||+.+++.. .+..+........|+|||+.|+..+.. |. -|.++|+.+++.. .+...  ...
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~-~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~--~~~  332 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLS-RVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFV--GNY  332 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeE-EcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecC--CCC
Confidence            875432 12336888999887643 455555566778999999998877653 22 2456788777642 22111  112


Q ss_pred             EEEEEEecCCCcccEEEEEeCC-C--cEEEEecCCCC
Q 019349          227 IFSLSFGQSMQFQDILVATSSS-G--SLHVFSPGFAI  260 (342)
Q Consensus       227 v~~l~fs~d~~~~~~l~~~s~d-g--~i~vwd~~~~~  260 (342)
                      ....+|+||++   +|+..+.+ +  .|.+||++++.
T Consensus       333 ~~~~~~Spdg~---~i~~~~~~~~~~~l~~~dl~tg~  366 (430)
T PRK00178        333 NARPRLSADGK---TLVMVHRQDGNFHVAAQDLQRGS  366 (430)
T ss_pred             ccceEECCCCC---EEEEEEccCCceEEEEEECCCCC
Confidence            33568999999   78777653 3  47888887654

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.06  E-value=1.4e-07  Score=87.63  Aligned_cols=212  Identities=15%  Similarity=0.095  Sum_probs=130.1

Q ss_pred             EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--
Q 019349           30 FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--  106 (342)
Q Consensus        30 ~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--  106 (342)
                      +.++|.+..... .......+....+.++++.++++....    ....|.+||+.+++......+...+..+.|+++.  
T Consensus       172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~----~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFES----GKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCC----CCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            456666543222 221222344556778888888776421    1368999999988765544455566678888875  


Q ss_pred             EEEEE--C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC-CCccEEEEEEccCCceeEEEecccCC
Q 019349          107 LVIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAP  181 (342)
Q Consensus       107 ~~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~  181 (342)
                      +++..  +  ..|++||+.+++.. .+..+..  ......+++++..|++.+. .....|.++|+.+++. ..+..+...
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~-~l~~~~~--~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~  323 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLT-RLTNGPG--IDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGY  323 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEE-ECCCCCC--CCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCC
Confidence            44333  2  36999999877543 2222221  1123345677777776542 1123688888877654 344445566


Q ss_pred             eeEEEECCCCCEEEEEeCCC---cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc---EEEEe
Q 019349          182 LAAIVLSSNGMYIATASEQG---TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS---LHVFS  255 (342)
Q Consensus       182 v~~i~~s~dg~~lat~s~dg---~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~---i~vwd  255 (342)
                      +....|+|||++|+.++.++   . |.+||+.++.. ..+...   ......+|+||++   +|+..+.++.   +++.+
T Consensus       324 ~~~~~~spdg~~i~~~~~~~~~~~-i~~~d~~~~~~-~~l~~~---~~~~~p~~spdg~---~l~~~~~~~~~~~l~~~~  395 (417)
T TIGR02800       324 NASPSWSPDGDLIAFVHREGGGFN-IAVMDLDGGGE-RVLTDT---GLDESPSFAPNGR---MILYATTRGGRGVLGLVS  395 (417)
T ss_pred             ccCeEECCCCCEEEEEEccCCceE-EEEEeCCCCCe-EEccCC---CCCCCceECCCCC---EEEEEEeCCCcEEEEEEE
Confidence            77889999999999988775   4 46889887653 222211   1234568999998   7887776653   45555


Q ss_pred             cC
Q 019349          256 PG  257 (342)
Q Consensus       256 ~~  257 (342)
                      ..
T Consensus       396 ~~  397 (417)
T TIGR02800       396 TD  397 (417)
T ss_pred             CC
Confidence            43

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.06  E-value=9.8e-09  Score=93.04  Aligned_cols=177  Identities=14%  Similarity=0.175  Sum_probs=135.2

Q ss_pred             CCeEEEEECCCCcEEEEEecC-CceEEEEEcCCe-EEEEE--CCeEEEEECCCCceeeEEeCCCC----C-----ceEEE
Q 019349           74 PRRLCLFNTTTGTALRELNFL-TSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPN----L-----KGLCA  140 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~-~~~~~--d~~i~i~d~~~~~~~~~~~~~~~----~-----~~~~~  140 (342)
                      ...|.-.|+.+|+.+.-+... +.+..+..++.+ ++.++  ++.|..||-++...+..+....+    +     ..+.+
T Consensus       154 g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTa  233 (703)
T KOG2321|consen  154 GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTA  233 (703)
T ss_pred             CcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceE
Confidence            357888899999988887766 478888888754 44443  78999999998877766644332    1     23778


Q ss_pred             EeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE-ecccCCeeEEEECCCC--CEEEEEeCCCcEEEEEEcCCCeeEEE
Q 019349          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI-DAHQAPLAAIVLSSNG--MYIATASEQGTIIRVFLVSEATKSYS  217 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~-~~h~~~v~~i~~s~dg--~~lat~s~dg~~irlwd~~~~~~~~~  217 (342)
                      +.+..++..++++.  ..|.|.|||+++.+++..- ....-||..+.|.+.+  +.|+|.  |..++||||-.+|+....
T Consensus       234 l~F~d~gL~~aVGt--s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~--Dk~~~kiWd~~~Gk~~as  309 (703)
T KOG2321|consen  234 LKFRDDGLHVAVGT--STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM--DKRILKIWDECTGKPMAS  309 (703)
T ss_pred             EEecCCceeEEeec--cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec--chHHhhhcccccCCceee
Confidence            89988888998887  5899999999998876432 2344689999998763  455554  556789999999998877


Q ss_pred             eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      +...   ..++.+++-|++.   ++.++-+++.++.|=+..--
T Consensus       310 iEpt---~~lND~C~~p~sG---m~f~Ane~~~m~~yyiP~LG  346 (703)
T KOG2321|consen  310 IEPT---SDLNDFCFVPGSG---MFFTANESSKMHTYYIPSLG  346 (703)
T ss_pred             cccc---CCcCceeeecCCc---eEEEecCCCcceeEEccccC
Confidence            6432   3488999999988   99999999999988776543

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.02  E-value=2e-06  Score=76.78  Aligned_cols=256  Identities=12%  Similarity=0.078  Sum_probs=146.6

Q ss_pred             CcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCC---CCCCCeEEEEECCCCcEEEEEecCCceE------
Q 019349           28 DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQP---SLSPRRLCLFNTTTGTALRELNFLTSIL------   98 (342)
Q Consensus        28 ~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~d~~i~iwd~~~~~~~~~~~~~~~v~------   98 (342)
                      +.+.+.|.++++++-....+......+.++.+.+.++......   .-.+..|.+||..+.+.+.++..+....      
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~  106 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTY  106 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCc
Confidence            4578999999887765544333222366777777666541000   0136889999999999999998654422      


Q ss_pred             --EEEEcCCe--EEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC-Cc
Q 019349           99 --AVRLNKKR--LVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME-LH  170 (342)
Q Consensus        99 --~i~~~~~~--~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~-~~  170 (342)
                        .+.+++++  ++++.   ++.+-+.|+.+++.+.++..+. ...++.  .+++. +++.+.   ||......+.. ++
T Consensus       107 ~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~--t~e~~-~~~~~~---Dg~~~~v~~d~~g~  179 (352)
T TIGR02658       107 PWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFP--TANDT-FFMHCR---DGSLAKVGYGTKGN  179 (352)
T ss_pred             cceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEE--ecCCc-cEEEee---cCceEEEEecCCCc
Confidence              66777764  44444   6799999999999999998743 222222  22222 222222   34443332221 11


Q ss_pred             -eeEE---Eec-----ccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCC-----CeeEEEecc-----CcCceeEEEE
Q 019349          171 -SHCE---IDA-----HQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSE-----ATKSYSFRR-----GTYPSTIFSL  230 (342)
Q Consensus       171 -~~~~---~~~-----h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~-----~~~~~~~~~-----~~~~~~v~~l  230 (342)
                       ...+   +..     ...|    .|++ ||+++....+ |++ .+.|+..     .+.+..+..     +..+..+.-+
T Consensus       180 ~~~~~~~vf~~~~~~v~~rP----~~~~~dg~~~~vs~e-G~V-~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~i  253 (352)
T TIGR02658       180 PKIKPTEVFHPEDEYLINHP----AYSNKSGRLVWPTYT-GKI-FQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQV  253 (352)
T ss_pred             eEEeeeeeecCCccccccCC----ceEcCCCcEEEEecC-CeE-EEEecCCCcceecceeeeccccccccccCCCcceeE
Confidence             1111   111     1223    4556 8888877776 875 7999533     222222211     1123334559


Q ss_pred             EEecCCCcccEEEEEe----------CCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCc
Q 019349          231 SFGQSMQFQDILVATS----------SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV  300 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (342)
                      +++|+++   .|.+..          ..+.|.++|.++.+...+          +.-.  ...|          .+.+.+
T Consensus       254 a~~~dg~---~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~----------i~vG--~~~~----------~iavS~  308 (352)
T TIGR02658       254 AYHRARD---RIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRK----------IELG--HEID----------SINVSQ  308 (352)
T ss_pred             EEcCCCC---EEEEEecCCccccccCCCCEEEEEECCCCeEEEE----------EeCC--Ccee----------eEEECC
Confidence            9999998   777643          125799999887765331          1000  0122          223345


Q ss_pred             ccc-EEEEEE-eCCcEEEEEEec
Q 019349          301 KRA-SVSVIT-YNGYFVEYIFSI  321 (342)
Q Consensus       301 ~~~-~l~~~~-~dg~v~~~~~~~  321 (342)
                      +++ .|++.+ .++.|.+++...
T Consensus       309 Dgkp~lyvtn~~s~~VsViD~~t  331 (352)
T TIGR02658       309 DAKPLLYALSTGDKTLYIFDAET  331 (352)
T ss_pred             CCCeEEEEeCCCCCcEEEEECcC
Confidence            556 788777 578899887543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.98  E-value=3.2e-07  Score=85.23  Aligned_cols=178  Identities=8%  Similarity=-0.001  Sum_probs=103.8

Q ss_pred             CeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEE--EE--C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC
Q 019349           75 RRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVI--VL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN  146 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~--~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (342)
                      ..|.+.|...+....-......+..=.|+|++  +.+  .+  +  ..|++.++.+++..+..... .  ......++||
T Consensus       165 ~~l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~-g--~~~~p~wSPD  241 (428)
T PRK01029        165 GELWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQ-G--NQLMPTFSPR  241 (428)
T ss_pred             ceEEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCC-C--CccceEECCC
Confidence            46778887655443222223455666888883  322  33  2  37899999877543322221 1  2234567788


Q ss_pred             ccEEEEeCCC---CccEEEEEEccCC---ceeEEEecccCCeeEEEECCCCCEEEEEeC-CCcEEEEEE--cCC-CeeEE
Q 019349          147 ACFLAVPAST---TKGSVLVYNVMEL---HSHCEIDAHQAPLAAIVLSSNGMYIATASE-QGTIIRVFL--VSE-ATKSY  216 (342)
Q Consensus       147 ~~~l~~~~~~---~~g~i~iwd~~~~---~~~~~~~~h~~~v~~i~~s~dg~~lat~s~-dg~~irlwd--~~~-~~~~~  216 (342)
                      +..|++....   .+..+.+|++..+   +.......+.......+|||||+.|+..+. +|. .++|.  +.. +....
T Consensus       242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~-~~ly~~~~~~~g~~~~  320 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGR-PRIYIMQIDPEGQSPR  320 (428)
T ss_pred             CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCC-ceEEEEECcccccceE
Confidence            8888876521   1334555777653   333333233334567899999999887764 554 35664  332 22233


Q ss_pred             EeccCcCceeEEEEEEecCCCcccEEEEEeCC---CcEEEEecCCCCC
Q 019349          217 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAIN  261 (342)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd~~~~~~  261 (342)
                      .+...  ...+...+||||++   +|+..+.+   ..|++||+++++.
T Consensus       321 ~lt~~--~~~~~~p~wSPDG~---~Laf~~~~~g~~~I~v~dl~~g~~  363 (428)
T PRK01029        321 LLTKK--YRNSSCPAWSPDGK---KIAFCSVIKGVRQICVYDLATGRD  363 (428)
T ss_pred             EeccC--CCCccceeECCCCC---EEEEEEcCCCCcEEEEEECCCCCe
Confidence            33221  23456789999999   88876553   3699999987654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.98  E-value=4.1e-07  Score=81.68  Aligned_cols=245  Identities=12%  Similarity=0.107  Sum_probs=151.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCC--------CCCCCCeE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ--------PSLSPRRL   77 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--------~~~~d~~i   77 (342)
                      ..-++..++|||.|++|+.....++.+|....+..+.......+..+.+.+..+++.+-.....        |...++.+
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~~V~~~~g~~~~~l~~~~~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~  110 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAAGVECWGGPSKAKLVRFRHPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNV  110 (561)
T ss_pred             cCcchhheeecCcchheehhhccceEEccccchhheeeeecCCceecccCcccceeeeeccCCccChhhccCCccccCce
Confidence            3457889999999999999999999999988776555555566777777777777765443211        12345689


Q ss_pred             EEEECCCCcEEEEEecCC-c--eE-EEEEcCCeEEE--EECCeEEEEECCCCcee-eEEeCCCCCceEEEEeeCCC--cc
Q 019349           78 CLFNTTTGTALRELNFLT-S--IL-AVRLNKKRLVI--VLREKTYIYDANTLAIL-DTIDTVPNLKGLCAFSPSLN--AC  148 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~~~~-~--v~-~i~~~~~~~~~--~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~  148 (342)
                      .+||..+|..+..+.... +  .. -+.|+-+..++  ...+.++|+++ ++..- ..+.. -.+.++..++.+|.  ..
T Consensus       111 ~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv~~sl~i~e~-t~n~~~~p~~~-lr~~gi~dFsisP~~n~~  188 (561)
T COG5354         111 FVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVVGSSLYIHEI-TDNIEEHPFKN-LRPVGILDFSISPEGNHD  188 (561)
T ss_pred             eEEeccCceeEeeccccCCcccccceeeeeecchhhhhhccCeEEEEec-CCccccCchhh-ccccceeeEEecCCCCCc
Confidence            999999999998876543 2  22 23444443333  34789999997 33211 11111 11345555555543  33


Q ss_pred             EEEEeC---CCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC-----------CCcEEEEEEcCCCee
Q 019349          149 FLAVPA---STTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE-----------QGTIIRVFLVSEATK  214 (342)
Q Consensus       149 ~l~~~~---~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~-----------dg~~irlwd~~~~~~  214 (342)
                      .||+=.   ....+++++|.+..+..+.+-.-.+..=..+.|.+.|++|+.--.           ..+ +.|++++....
T Consensus       189 ~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesn-Lyl~~~~e~~i  267 (561)
T COG5354         189 ELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESN-LYLLRITERSI  267 (561)
T ss_pred             eEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccce-EEEEeeccccc
Confidence            344311   115789999999876655432222222245778888887664211           112 35666653222


Q ss_pred             EEEeccCcCceeEEEEEEecCCCcccEEEEEe--CCCcEEEEecCCC
Q 019349          215 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATS--SSGSLHVFSPGFA  259 (342)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s--~dg~i~vwd~~~~  259 (342)
                      ..+.   ...++|...+|+|.++   .+++.+  .+-++.++|++.+
T Consensus       268 ~V~~---~~~~pVhdf~W~p~S~---~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         268 PVEK---DLKDPVHDFTWEPLSS---RFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             ceec---cccccceeeeecccCC---ceeEEecccccceeecccccc
Confidence            1111   1245699999999987   666655  6778999998875

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=98.96  E-value=8.7e-07  Score=80.49  Aligned_cols=232  Identities=11%  Similarity=0.173  Sum_probs=146.8

Q ss_pred             EEEEEcCCCCEEEEEcCCcEEEEeCCCCcEE-EEEeeCCEEEEEEcCCC--CeEEEEcCCCCCCCCCCeEEEEECCCCc-
Q 019349           11 FFVSFNQDNSGFALSTKDGFKIFDSSTGRLC-YERAVGAFSIVEMLYSS--SLLAIVGAGEQPSLSPRRLCLFNTTTGT-   86 (342)
Q Consensus        11 ~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~~d~~i~iwd~~~~~-   86 (342)
                      .+.+|++|..+.|=-..+.+.+|++...+.. ..++..++....+.+.+  ..+++-.-+..+  ....|+||...-.. 
T Consensus       129 W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kG--aPa~vri~~~~~~~~  206 (566)
T KOG2315|consen  129 WVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKKG--APASVRIYKYPEEGQ  206 (566)
T ss_pred             cccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCCC--CCcEEEEeccccccc
Confidence            5889999988654444566899998876443 33455666666665553  345443332222  47889999875221 


Q ss_pred             --EEEEEe-cCCceEEEEEcCC---eEEEEE------------CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349           87 --ALRELN-FLTSILAVRLNKK---RLVIVL------------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        87 --~~~~~~-~~~~v~~i~~~~~---~~~~~~------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
                        .+..-. +...-..+.|++.   .+++++            +.++++++++.....-.+.. .  ..+.++.+++++.
T Consensus       207 ~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~--GPVhdv~W~~s~~  283 (566)
T KOG2315|consen  207 HQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-E--GPVHDVTWSPSGR  283 (566)
T ss_pred             cchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-C--CCceEEEECCCCC
Confidence              111111 1223334556543   233332            24788888874443333321 2  2356666666664


Q ss_pred             EE-EEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC---CcEEEEEEcCCCeeEEEeccCcCc
Q 019349          149 FL-AVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEATKSYSFRRGTYP  224 (342)
Q Consensus       149 ~l-~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d---g~~irlwd~~~~~~~~~~~~~~~~  224 (342)
                      -+ ++-|. .--.+.|+|++. .++..+  ..++=+++-|+|.|++|+.|+-+   |. |-+||+.+.+++..+...   
T Consensus       284 EF~VvyGf-MPAkvtifnlr~-~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~-mEvwDv~n~K~i~~~~a~---  355 (566)
T KOG2315|consen  284 EFAVVYGF-MPAKVTIFNLRG-KPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGD-MEVWDVPNRKLIAKFKAA---  355 (566)
T ss_pred             EEEEEEec-ccceEEEEcCCC-CEeEeC--CCCCccceEECCCCCEEEEeecCCCCCc-eEEEeccchhhccccccC---
Confidence            33 33454 567899999874 455554  35677899999999999999865   66 479999998888877532   


Q ss_pred             eeEEEEEEecCCCcccEEEEEeC------CCcEEEEecCCC
Q 019349          225 STIFSLSFGQSMQFQDILVATSS------SGSLHVFSPGFA  259 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~s~------dg~i~vwd~~~~  259 (342)
                       .-+-..|+|||+   +|++++.      |+.++||+....
T Consensus       356 -~tt~~eW~PdGe---~flTATTaPRlrvdNg~KiwhytG~  392 (566)
T KOG2315|consen  356 -NTTVFEWSPDGE---YFLTATTAPRLRVDNGIKIWHYTGS  392 (566)
T ss_pred             -CceEEEEcCCCc---EEEEEeccccEEecCCeEEEEecCc
Confidence             234468999999   7877764      789999998654

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.95  E-value=8.8e-07  Score=82.94  Aligned_cols=212  Identities=13%  Similarity=0.001  Sum_probs=122.2

Q ss_pred             EEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--E
Q 019349           31 KIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--L  107 (342)
Q Consensus        31 ~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~  107 (342)
                      .++|.+..... .......+....+.++++.+++++...    ....|.+||+.+++.......+.......|+|+.  +
T Consensus       201 ~i~d~dG~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~----g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~L  276 (448)
T PRK04792        201 MIADYDGYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFEN----RKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKL  276 (448)
T ss_pred             EEEeCCCCCceEeecCCCcccCceECCCCCEEEEEEecC----CCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEE
Confidence            44465444221 222223455567888888888876421    1347999999888754333334444567888875  3


Q ss_pred             EEEE--CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc--cEEEEEEccCCceeEEEecccCC
Q 019349          108 VIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK--GSVLVYNVMELHSHCEIDAHQAP  181 (342)
Q Consensus       108 ~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--g~i~iwd~~~~~~~~~~~~h~~~  181 (342)
                      +++.  ++  .|+++|+.+++.. .+..+..  .....+++||+..+++.+. .+  ..|.++|+.+++... +..+...
T Consensus       277 a~~~~~~g~~~Iy~~dl~tg~~~-~lt~~~~--~~~~p~wSpDG~~I~f~s~-~~g~~~Iy~~dl~~g~~~~-Lt~~g~~  351 (448)
T PRK04792        277 ALVLSKDGQPEIYVVDIATKALT-RITRHRA--IDTEPSWHPDGKSLIFTSE-RGGKPQIYRVNLASGKVSR-LTFEGEQ  351 (448)
T ss_pred             EEEEeCCCCeEEEEEECCCCCeE-ECccCCC--CccceEECCCCCEEEEEEC-CCCCceEEEEECCCCCEEE-EecCCCC
Confidence            3333  44  5888899877543 3322211  2234456778888876653 23  356667777766432 2222222


Q ss_pred             eeEEEECCCCCEEEEEeCCCcE--EEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC-Cc--EEEEec
Q 019349          182 LAAIVLSSNGMYIATASEQGTI--IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-GS--LHVFSP  256 (342)
Q Consensus       182 v~~i~~s~dg~~lat~s~dg~~--irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d-g~--i~vwd~  256 (342)
                      ....+|+|||++|+..+.++..  |.++|+.+++. ..+....   .....+|+||++   +|+..+.+ +.  ++++++
T Consensus       352 ~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~~---~d~~ps~spdG~---~I~~~~~~~g~~~l~~~~~  424 (448)
T PRK04792        352 NLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM-QVLTSTR---LDESPSVAPNGT---MVIYSTTYQGKQVLAAVSI  424 (448)
T ss_pred             CcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe-EEccCCC---CCCCceECCCCC---EEEEEEecCCceEEEEEEC
Confidence            3456899999999887664322  23568777754 2332211   112347999998   77666543 33  667776


Q ss_pred             CC
Q 019349          257 GF  258 (342)
Q Consensus       257 ~~  258 (342)
                      +.
T Consensus       425 ~G  426 (448)
T PRK04792        425 DG  426 (448)
T ss_pred             CC
Confidence            43

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.94  E-value=4.4e-08  Score=85.33  Aligned_cols=101  Identities=18%  Similarity=0.127  Sum_probs=79.7

Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  236 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (342)
                      ....+.+|....+ +...+-+|-+-+..|+++||+++|+|+..|.. ||+-.....-.+..|--| |..-|..++.-++.
T Consensus       130 D~~~~di~s~~~~-~~~~~lGhvSml~dVavS~D~~~IitaDRDEk-IRvs~ypa~f~IesfclG-H~eFVS~isl~~~~  206 (390)
T KOG3914|consen  130 DVYSFDILSADSG-RCEPILGHVSMLLDVAVSPDDQFIITADRDEK-IRVSRYPATFVIESFCLG-HKEFVSTISLTDNY  206 (390)
T ss_pred             Cceeeeeeccccc-CcchhhhhhhhhheeeecCCCCEEEEecCCce-EEEEecCcccchhhhccc-cHhheeeeeeccCc
Confidence            3556666666553 33456689999999999999999999999987 688777766666666554 34559999998765


Q ss_pred             CcccEEEEEeCCCcEEEEecCCCCCCCC
Q 019349          237 QFQDILVATSSSGSLHVFSPGFAINQRR  264 (342)
Q Consensus       237 ~~~~~l~~~s~dg~i~vwd~~~~~~~~~  264 (342)
                          .|+++|.|++|++||+..++.+..
T Consensus       207 ----~LlS~sGD~tlr~Wd~~sgk~L~t  230 (390)
T KOG3914|consen  207 ----LLLSGSGDKTLRLWDITSGKLLDT  230 (390)
T ss_pred             ----eeeecCCCCcEEEEecccCCcccc
Confidence                599999999999999999987653

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.91  E-value=4.5e-08  Score=83.74  Aligned_cols=245  Identities=13%  Similarity=0.124  Sum_probs=145.6

Q ss_pred             CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE-----EEEEe-------------cCCceEEEEEcCC---
Q 019349           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA-----LRELN-------------FLTSILAVRLNKK---  105 (342)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~-----~~~~~-------------~~~~v~~i~~~~~---  105 (342)
                      .-+..+.+.+.++++++...       +|.|.++.-.....     ..+++             ....|..|.|.++   
T Consensus        26 diis~vef~~~Ge~LatGdk-------gGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~   98 (433)
T KOG1354|consen   26 DIISAVEFDHYGERLATGDK-------GGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNL   98 (433)
T ss_pred             cceeeEEeecccceEeecCC-------CCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCc
Confidence            45667888888899887655       57777776432211     11111             1235677777543   


Q ss_pred             -eEEEEE-CCeEEEEECCCCceee---------------EEe-------------------CCCCCceEEEEeeCCCccE
Q 019349          106 -RLVIVL-REKTYIYDANTLAILD---------------TID-------------------TVPNLKGLCAFSPSLNACF  149 (342)
Q Consensus       106 -~~~~~~-d~~i~i~d~~~~~~~~---------------~~~-------------------~~~~~~~~~~~~~~~~~~~  149 (342)
                       .+++.+ |.+|++|.+.......               .++                   ...+..-+.+++.+.|...
T Consensus        99 a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et  178 (433)
T KOG1354|consen   99 AEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKET  178 (433)
T ss_pred             cEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccce
Confidence             344444 8899999985421110               110                   0111223456777777777


Q ss_pred             EEEeCCCCccEEEEEEccCCce---eEEEecc-----cCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCe------e
Q 019349          150 LAVPASTTKGSVLVYNVMELHS---HCEIDAH-----QAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEAT------K  214 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~~~---~~~~~~h-----~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~------~  214 (342)
                      +.++.   |=.|.+|+++-...   +.-++.|     ..-|++..|+|. -++++-.|..|+ ||+-|++...      +
T Consensus       179 ~lSAD---dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGt-IrLcDmR~~aLCd~hsK  254 (433)
T KOG1354|consen  179 FLSAD---DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGT-IRLCDMRQSALCDAHSK  254 (433)
T ss_pred             Eeecc---ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCc-EEEeechhhhhhcchhh
Confidence            76653   78899999864332   2223333     345889999994 477888888998 6999998432      1


Q ss_pred             EEEecc-CcC-------ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC-CCCCCccccccc-----c----c
Q 019349          215 SYSFRR-GTY-------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ-RRGGRTSSILGS-----I----L  276 (342)
Q Consensus       215 ~~~~~~-~~~-------~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~-~~~~~~~~~~~~-----~----~  276 (342)
                      +.+.+. +..       -+.|..+.|+++|+   ++++-. --+|++||+.....+ .+.+.+. ++..     +    .
T Consensus       255 lfEepedp~~rsffseiIsSISDvKFs~sGr---yilsRD-yltvk~wD~nme~~pv~t~~vh~-~lr~kLc~lYEnD~I  329 (433)
T KOG1354|consen  255 LFEEPEDPSSRSFFSEIISSISDVKFSHSGR---YILSRD-YLTVKLWDLNMEAKPVETYPVHE-YLRSKLCSLYENDAI  329 (433)
T ss_pred             hhccccCCcchhhHHHHhhhhhceEEccCCc---EEEEec-cceeEEEeccccCCcceEEeehH-hHHHHHHHHhhccch
Confidence            222111 100       12378899999998   776433 369999999655433 2211111 1111     1    1


Q ss_pred             cccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          277 PESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      -+.|.|.|+-..              .++++|+.+..+++|+++.
T Consensus       330 fdKFec~~sg~~--------------~~v~TGsy~n~frvf~~~~  360 (433)
T KOG1354|consen  330 FDKFECSWSGND--------------SYVMTGSYNNVFRVFNLAR  360 (433)
T ss_pred             hheeEEEEcCCc--------------ceEecccccceEEEecCCC
Confidence            133456665544              7899999999999998543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.91  E-value=4.7e-09  Score=62.42  Aligned_cols=39  Identities=28%  Similarity=0.458  Sum_probs=35.9

Q ss_pred             CceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349          169 LHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL  208 (342)
Q Consensus       169 ~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd  208 (342)
                      ++++.++.+|.++|++|+|+|++++|++++.|++ |++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~-i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGT-IRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSE-EEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCE-EEEEC
Confidence            3578899999999999999999999999999997 58997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.90  E-value=9.4e-07  Score=82.14  Aligned_cols=198  Identities=14%  Similarity=0.055  Sum_probs=117.7

Q ss_pred             EEEcCCCCe--EEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEEC--C--eEEE--EECC
Q 019349           52 VEMLYSSSL--LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVLR--E--KTYI--YDAN  121 (342)
Q Consensus        52 ~~~~~~~~~--~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~d--~--~i~i--~d~~  121 (342)
                      -.|.++++.  +++++...    ....|.+.++.+++...-..++.......|+||+  ++...+  +  .+++  |++.
T Consensus       190 P~wSPDG~~~~~~y~S~~~----g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~  265 (428)
T PRK01029        190 PTWMHIGSGFPYLYVSYKL----GVPKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLE  265 (428)
T ss_pred             ceEccCCCceEEEEEEccC----CCceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecc
Confidence            356677655  33355321    1356888899888765544556666677888885  333332  2  3444  6765


Q ss_pred             CC--ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEE--EccC-CceeEEEecccCCeeEEEECCCCCEEEE
Q 019349          122 TL--AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVY--NVME-LHSHCEIDAHQAPLAAIVLSSNGMYIAT  196 (342)
Q Consensus       122 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iw--d~~~-~~~~~~~~~h~~~v~~i~~s~dg~~lat  196 (342)
                      .+  .....+.... .......+++||+..|++.+. .+|...+|  ++.. +.....+..+...+....|||||++|+.
T Consensus       266 ~g~~g~~~~lt~~~-~~~~~~p~wSPDG~~Laf~s~-~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf  343 (428)
T PRK01029        266 TGAIGKPRRLLNEA-FGTQGNPSFSPDGTRLVFVSN-KDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAF  343 (428)
T ss_pred             cCCCCcceEeecCC-CCCcCCeEECCCCCEEEEEEC-CCCCceEEEEECcccccceEEeccCCCCccceeECCCCCEEEE
Confidence            42  1222222111 111234567888888887653 35655555  4432 2334445555566788899999999987


Q ss_pred             EeCCC--cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeC---CCcEEEEecCCCCC
Q 019349          197 ASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS---SGSLHVFSPGFAIN  261 (342)
Q Consensus       197 ~s~dg--~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~---dg~i~vwd~~~~~~  261 (342)
                      .+.++  .-|.+||+.+++.. .+..+  ...+....|+||++   +|+..+.   ...|+++|++..+.
T Consensus       344 ~~~~~g~~~I~v~dl~~g~~~-~Lt~~--~~~~~~p~wSpDG~---~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        344 CSVIKGVRQICVYDLATGRDY-QLTTS--PENKESPSWAIDSL---HLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             EEcCCCCcEEEEEECCCCCeE-EccCC--CCCccceEECCCCC---EEEEEECCCCCceEEEEECCCCCE
Confidence            76542  23579999888653 33222  23466789999998   7765443   24588888876543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.89  E-value=1.4e-06  Score=80.34  Aligned_cols=222  Identities=9%  Similarity=0.070  Sum_probs=130.3

Q ss_pred             CCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCE-EEE----------EEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAF-SIV----------EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus        19 ~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~-~~~----------~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      +..+.+++.++ +.-+|..+|+++.+...... ...          ......+.+. ++.      .++.+..+|.++|+
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~-v~~------~~g~l~ald~~tG~  141 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVY-IGS------EKGQVYALNAEDGE  141 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEE-EEc------CCCEEEEEECCCCC
Confidence            44566666655 57889999988766543220 000          0111223333 333      37899999999999


Q ss_pred             EEEEEecCCceEE-EEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCc---eEEEEeeCCCccEEEEeCCCCccEE
Q 019349           87 ALRELNFLTSILA-VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLK---GLCAFSPSLNACFLAVPASTTKGSV  161 (342)
Q Consensus        87 ~~~~~~~~~~v~~-i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~g~i  161 (342)
                      .+.+.+....+.+ ..+..+.+++.. ++.++-+|..+++.+..........   ....-... ++ .++.+.  .+|.+
T Consensus       142 ~~W~~~~~~~~~ssP~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~-~~-~v~~~~--~~g~v  217 (394)
T PRK11138        142 VAWQTKVAGEALSRPVVSDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA-FG-GAIVGG--DNGRV  217 (394)
T ss_pred             CcccccCCCceecCCEEECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE-CC-EEEEEc--CCCEE
Confidence            9988877665433 223445555554 7799999999999888775432110   00000001 12 333444  47889


Q ss_pred             EEEEccCCceeEEEeccc----C---CeeEEEECC--CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349          162 LVYNVMELHSHCEIDAHQ----A---PLAAIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  232 (342)
Q Consensus       162 ~iwd~~~~~~~~~~~~h~----~---~v~~i~~s~--dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f  232 (342)
                      ..+|..+++.+-..+...    .   ....+.-+|  .+..+..++.+|.+ ..+|..+|+.+.+...+.    ...+..
T Consensus       218 ~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l-~ald~~tG~~~W~~~~~~----~~~~~~  292 (394)
T PRK11138        218 SAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNL-VALDLRSGQIVWKREYGS----VNDFAV  292 (394)
T ss_pred             EEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeE-EEEECCCCCEEEeecCCC----ccCcEE
Confidence            999998887654432110    0   011111222  24567777788875 689999999876653221    112222


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          233 GQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       233 s~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                        ++.   .|..++.+|.++.+|.++++.
T Consensus       293 --~~~---~vy~~~~~g~l~ald~~tG~~  316 (394)
T PRK11138        293 --DGG---RIYLVDQNDRVYALDTRGGVE  316 (394)
T ss_pred             --ECC---EEEEEcCCCeEEEEECCCCcE
Confidence              344   688888999999999887653

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.88  E-value=3.8e-06  Score=71.64  Aligned_cols=211  Identities=14%  Similarity=0.105  Sum_probs=127.8

Q ss_pred             CCeEEEEECCCCcEEEEEecCC---ceEE-EEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349           74 PRRLCLFNTTTGTALRELNFLT---SILA-VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~---~v~~-i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
                      +++|..||..+|+.+.+.....   .... .......++++. ++.++.||..+++.+..+..........  ....+  
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~--   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--VVDGG--   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--EEETT--
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee--eeccc--
Confidence            6799999999999999987632   2222 233666777775 7899999999999998887633322221  22222  


Q ss_pred             EEEEeCCCCccEEEEEEccCCceeEEE-ecccC---CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc
Q 019349          149 FLAVPASTTKGSVLVYNVMELHSHCEI-DAHQA---PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP  224 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~-~~h~~---~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~  224 (342)
                      .+++..  .++.|..+|..+++.+... .....   .........++..++.+..+|.+ ..+|.++|+.+.+.......
T Consensus        78 ~v~v~~--~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l-~~~d~~tG~~~w~~~~~~~~  154 (238)
T PF13360_consen   78 RVYVGT--SDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKL-VALDPKTGKLLWKYPVGEPR  154 (238)
T ss_dssp             EEEEEE--TTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEE-EEEETTTTEEEEEEESSTT-
T ss_pred             cccccc--ceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcE-EEEecCCCcEEEEeecCCCC
Confidence            333333  3679999999999988763 32211   11222233347888888888875 69999999998877543211


Q ss_pred             --eeE-------EEEEEecCCCcccEEEEEeCCCc-EEEEecCCCCCCCCCCCccccccccccccccccccccccceeee
Q 019349          225 --STI-------FSLSFGQSMQFQDILVATSSSGS-LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRN  294 (342)
Q Consensus       225 --~~v-------~~l~fs~d~~~~~~l~~~s~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (342)
                        ..+       ..+.+. ++    .+..++.++. +.+ |+++++.                     +|.......  .
T Consensus       155 ~~~~~~~~~~~~~~~~~~-~~----~v~~~~~~g~~~~~-d~~tg~~---------------------~w~~~~~~~--~  205 (238)
T PF13360_consen  155 GSSPISSFSDINGSPVIS-DG----RVYVSSGDGRVVAV-DLATGEK---------------------LWSKPISGI--Y  205 (238)
T ss_dssp             SS--EEEETTEEEEEECC-TT----EEEEECCTSSEEEE-ETTTTEE---------------------EEEECSS-E--C
T ss_pred             CCcceeeecccccceEEE-CC----EEEEEcCCCeEEEE-ECCCCCE---------------------EEEecCCCc--c
Confidence              111       223333 33    4666777775 555 8887653                     121110000  0


Q ss_pred             ccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          295 AFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       295 ~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      . .....++.|++.+.||.++.|++..
T Consensus       206 ~-~~~~~~~~l~~~~~~~~l~~~d~~t  231 (238)
T PF13360_consen  206 S-LPSVDGGTLYVTSSDGRLYALDLKT  231 (238)
T ss_dssp             E-CEECCCTEEEEEETTTEEEEEETTT
T ss_pred             C-CceeeCCEEEEEeCCCEEEEEECCC
Confidence            0 0122347888888999999886543

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.87  E-value=1.3e-06  Score=80.54  Aligned_cols=259  Identities=11%  Similarity=0.062  Sum_probs=145.7

Q ss_pred             CCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCce
Q 019349           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI   97 (342)
Q Consensus        19 ~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v   97 (342)
                      +..+.+++.++ +.-+|.++|+++.+...............+.+.+ ..      .++.|..+|.++|+.+.+.....+.
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~~~v~v-~~------~~g~l~ald~~tG~~~W~~~~~~~~  192 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVVSDGLVLV-HT------SNGMLQALNESDGAVKWTVNLDVPS  192 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEEECCEEEE-EC------CCCEEEEEEccCCCEeeeecCCCCc
Confidence            44566676665 6889999998876654332111111111233333 33      3789999999999999887654221


Q ss_pred             E------EEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCC--c---eEEEEeeCC--CccEEEEeCCCCccEEEE
Q 019349           98 L------AVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNL--K---GLCAFSPSL--NACFLAVPASTTKGSVLV  163 (342)
Q Consensus        98 ~------~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~--~---~~~~~~~~~--~~~~l~~~~~~~~g~i~i  163 (342)
                      .      +-....+.+++.. ++.+..+|..+++.+.+.......  .   ....+...|  .+..+...+  .+|.+..
T Consensus       193 ~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~--~~g~l~a  270 (394)
T PRK11138        193 LTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA--YNGNLVA  270 (394)
T ss_pred             ccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE--cCCeEEE
Confidence            1      1112234445544 778999999998877655321110  0   000000111  112344444  4789999


Q ss_pred             EEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEE
Q 019349          164 YNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV  243 (342)
Q Consensus       164 wd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~  243 (342)
                      +|..+++.+-..+.  .....+..  ++..|..++.+|.+ ..+|..+|+.+.+..... .....+.... ++    +|.
T Consensus       271 ld~~tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l-~ald~~tG~~~W~~~~~~-~~~~~sp~v~-~g----~l~  339 (394)
T PRK11138        271 LDLRSGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRV-YALDTRGGVELWSQSDLL-HRLLTAPVLY-NG----YLV  339 (394)
T ss_pred             EECCCCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeE-EEEECCCCcEEEcccccC-CCcccCCEEE-CC----EEE
Confidence            99999987644321  11112222  45677778888885 699999998776543211 1112222222 34    688


Q ss_pred             EEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          244 ATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       244 ~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                      .++.+|.|++.|.++++..-+.+.        .+.   .+++.          + ...+++|++++.||.++.+.+
T Consensus       340 v~~~~G~l~~ld~~tG~~~~~~~~--------~~~---~~~s~----------P-~~~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        340 VGDSEGYLHWINREDGRFVAQQKV--------DSS---GFLSE----------P-VVADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEeCCCEEEEEECCCCCEEEEEEc--------CCC---cceeC----------C-EEECCEEEEEeCCceEEEEeC
Confidence            899999999999887654221000        000   01111          0 012368999999999988753

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.85  E-value=1.6e-05  Score=69.02  Aligned_cols=220  Identities=14%  Similarity=0.149  Sum_probs=142.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-c-EEEEeCCC-CcEEE----EEeeC----------CEEEEEEcCCCCeEEEEcCCC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKD-G-FKIFDSST-GRLCY----ERAVG----------AFSIVEMLYSSSLLAIVGAGE   68 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~-g-~~v~d~~~-~~~~~----~~~~~----------~~~~~~~~~~~~~~~~~~~g~   68 (342)
                      ...+-..++++++|++|+++.-. | +.++-++. |.+..    ..+.+          +.-...+.++.++++++.-| 
T Consensus        87 ~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG-  165 (346)
T COG2706          87 PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLG-  165 (346)
T ss_pred             CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecC-
Confidence            33444899999999999887543 3 68998754 43211    11111          13345667778888888765 


Q ss_pred             CCCCCCCeEEEEECCCCcEEEE----EecCCceEEEEEcCCeEEE--EE--CCeEEEEECCCC-ceeeEEe---CC----
Q 019349           69 QPSLSPRRLCLFNTTTGTALRE----LNFLTSILAVRLNKKRLVI--VL--REKTYIYDANTL-AILDTID---TV----  132 (342)
Q Consensus        69 ~~~~~d~~i~iwd~~~~~~~~~----~~~~~~v~~i~~~~~~~~~--~~--d~~i~i~d~~~~-~~~~~~~---~~----  132 (342)
                           -.+|.++++..|+....    +......+-|.|+|++.++  ..  +++|.+|..... ..+..++   +-    
T Consensus       166 -----~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF  240 (346)
T COG2706         166 -----TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDF  240 (346)
T ss_pred             -----CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCcccc
Confidence                 56889999987764322    2223467889999986444  33  889999998763 2333332   21    


Q ss_pred             CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC--c--eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349          133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL--H--SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL  208 (342)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~--~--~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd  208 (342)
                      .......++..++++++|.++.+ ....|.++.+...  +  .+.....+...-+...|+++|++|+.+.+++..|.+|.
T Consensus       241 ~g~~~~aaIhis~dGrFLYasNR-g~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~  319 (346)
T COG2706         241 TGTNWAAAIHISPDGRFLYASNR-GHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFE  319 (346)
T ss_pred             CCCCceeEEEECCCCCEEEEecC-CCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEE
Confidence            22345678888999999999887 4668999887543  2  22233345566788999999999999999887778886


Q ss_pred             cC--CCeeEEEeccCcCceeEEEEEEe
Q 019349          209 VS--EATKSYSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       209 ~~--~~~~~~~~~~~~~~~~v~~l~fs  233 (342)
                      ..  +|++-...... ...+..||.|.
T Consensus       320 ~d~~TG~L~~~~~~~-~~p~Pvcv~f~  345 (346)
T COG2706         320 RDKETGRLTLLGRYA-VVPEPVCVKFL  345 (346)
T ss_pred             EcCCCceEEeccccc-CCCCcEEEEEc
Confidence            64  55543322211 12234567664

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.85  E-value=1.1e-06  Score=72.91  Aligned_cols=216  Identities=14%  Similarity=0.097  Sum_probs=127.3

Q ss_pred             EEEEcC-----CCCEEEEEcCCc-EEEEeCCCCcEEEE---EeeCCEEEEEEcCCCC-eEEEEcCCCCCCCCCCeEEEEE
Q 019349           12 FVSFNQ-----DNSGFALSTKDG-FKIFDSSTGRLCYE---RAVGAFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus        12 ~l~fs~-----d~~~la~g~~~g-~~v~d~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .+.|.|     ...+||.|+..| +.+|.+.+.+....   .+..++.++.-..+.. .+.+++       .|+++++.+
T Consensus        72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~s-------ndht~k~~~  144 (344)
T KOG4532|consen   72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIAS-------NDHTGKTMV  144 (344)
T ss_pred             cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeecc-------CCcceeEEE
Confidence            445555     334688887776 79999886643322   2223444333222222 233343       488888888


Q ss_pred             CCCCcEEEEEecC-CceEEEEEcCCeEEEEE---CCeEEEEECCCC--ceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349           82 TTTGTALRELNFL-TSILAVRLNKKRLVIVL---REKTYIYDANTL--AILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        82 ~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      +.-+........+ -.+.++..+++.-..+.   ...|..|.+.+.  ..++ +...+....-.+.+++.+...+|++. 
T Consensus       145 ~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~-~~~a~t~D~gF~~S~s~~~~~FAv~~-  222 (344)
T KOG4532|consen  145 VSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN-IYEAPTSDHGFYNSFSENDLQFAVVF-  222 (344)
T ss_pred             EecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeee-eEecccCCCceeeeeccCcceEEEEe-
Confidence            7644332222222 23667777776544433   358999998653  2333 22223334456677777777888877 


Q ss_pred             CCccEEEEEEccCCcee-----EEEecccCCeeEEEECCCCCE-EEEEeCCCcEEEEEEcCCCeeEEEeccCc------C
Q 019349          156 TTKGSVLVYNVMELHSH-----CEIDAHQAPLAAIVLSSNGMY-IATASEQGTIIRVFLVSEATKSYSFRRGT------Y  223 (342)
Q Consensus       156 ~~~g~i~iwd~~~~~~~-----~~~~~h~~~v~~i~~s~dg~~-lat~s~dg~~irlwd~~~~~~~~~~~~~~------~  223 (342)
                       +||++.|||++.....     .+-+.|.+.+..+.|++-|.+ |+--++--..+.+-|++++.....+....      .
T Consensus       223 -Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~  301 (344)
T KOG4532|consen  223 -QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHN  301 (344)
T ss_pred             -cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCcccccccc
Confidence             7999999999865422     223468999999999986642 22223322235799999987554442211      1


Q ss_pred             ceeEEEEEEecCCC
Q 019349          224 PSTIFSLSFGQSMQ  237 (342)
Q Consensus       224 ~~~v~~l~fs~d~~  237 (342)
                      ...|..-.|+.++.
T Consensus       302 tq~ifgt~f~~~n~  315 (344)
T KOG4532|consen  302 TQHIFGTNFNNENE  315 (344)
T ss_pred             ccccccccccCCCc
Confidence            12377777877776

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.84  E-value=5.6e-06  Score=83.49  Aligned_cols=279  Identities=14%  Similarity=0.135  Sum_probs=165.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEE----eCCCCcEEEE-EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIF----DSSTGRLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~----d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      ...+.|.++.|-+|...|+++..+| +.++    +..+...... .-..++...+|.++...++++++       ++++.
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT~-------~~~l~  145 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVTG-------EGNLL  145 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEeC-------CCEEE
Confidence            3457899999999999999998888 4566    5555444332 23478999999999999999987       57777


Q ss_pred             EEECCCCcEEEEEecCC------ceEEEEEcCCeEEE-EECCeEEEEECCCCcee--eEEeCCCCCceEEEEeeCCCccE
Q 019349           79 LFNTTTGTALRELNFLT------SILAVRLNKKRLVI-VLREKTYIYDANTLAIL--DTIDTVPNLKGLCAFSPSLNACF  149 (342)
Q Consensus        79 iwd~~~~~~~~~~~~~~------~v~~i~~~~~~~~~-~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
                      +.. ++-..+.+.....      .-.++-|.++.... .+.++-.--.+.+....  ..-... ...+.+.+++-+||.+
T Consensus       146 ~mt-~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~y  223 (928)
T PF04762_consen  146 LMT-RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEY  223 (928)
T ss_pred             EEe-ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcE
Confidence            664 5566666554322      12222222211000 00111000000111100  000001 2235678899999999


Q ss_pred             EEEeCC--CC--ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC--CCcEEEEEEcCCCeeEEEeccC--
Q 019349          150 LAVPAS--TT--KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE--QGTIIRVFLVSEATKSYSFRRG--  221 (342)
Q Consensus       150 l~~~~~--~~--~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~--dg~~irlwd~~~~~~~~~~~~~--  221 (342)
                      +|+..-  ..  -..++||+-+ |+...+-+.-.+-=.+++|-|.|++||+.-.  +...|-+|- ++|..-.+|.-.  
T Consensus       224 FAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~  301 (928)
T PF04762_consen  224 FAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFD  301 (928)
T ss_pred             EEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCC
Confidence            997752  11  3689999955 5543333322222346899999999999865  222342444 577665555432  


Q ss_pred             cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccc--cc---cccccccccccceeeecc
Q 019349          222 TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSIL--PE---SVNEVLDPADHHVLRNAF  296 (342)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~~~~~  296 (342)
                      .....|..|+|++|+.   .||.--.|. |++|-...-.         .|+...+  +.   .....|+|...       
T Consensus       302 ~~~~~v~~l~Wn~ds~---iLAv~~~~~-vqLWt~~NYH---------WYLKqei~~~~~~~~~~~~Wdpe~p-------  361 (928)
T PF04762_consen  302 PEEEKVIELAWNSDSE---ILAVWLEDR-VQLWTRSNYH---------WYLKQEIRFSSSESVNFVKWDPEKP-------  361 (928)
T ss_pred             CCCceeeEEEECCCCC---EEEEEecCC-ceEEEeeCCE---------EEEEEEEEccCCCCCCceEECCCCC-------
Confidence            2345699999999999   899877654 9999765421         1111111  00   11256888652       


Q ss_pred             CCCccccEEEEEEeCCcEEEEEEe
Q 019349          297 PAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       297 ~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                            .+|.+++.+|.+..+++.
T Consensus       362 ------~~L~v~t~~g~~~~~~~~  379 (928)
T PF04762_consen  362 ------LRLHVLTSNGQYEIYDFA  379 (928)
T ss_pred             ------CEEEEEecCCcEEEEEEE
Confidence                  578888888888777664

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.84  E-value=7e-08  Score=90.06  Aligned_cols=299  Identities=10%  Similarity=0.047  Sum_probs=176.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCC----cEEEEEeeCCEEEEEEcCCC-CeEEEEcCCCCCCCCCCeEEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTG----RLCYERAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~----~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      .++++..++.+|.|+-+|.++..|+.+-|++..    +.+.....-.++-+.|...+ ....+++.      ...+-.+|
T Consensus        23 v~~~~~a~si~p~grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVst------s~qkaiiw   96 (1081)
T KOG0309|consen   23 VDGGFNAVSINPSGRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVST------SNQKAIIW   96 (1081)
T ss_pred             ecCcccceeeccccchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEec------Ccchhhhh
Confidence            346788899999999999999999888887543    33443333445556665544 33455555      36677899


Q ss_pred             ECCC--CcEEEEEe--cCCceEEEEEcCCeE---EEEE-CCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           81 NTTT--GTALRELN--FLTSILAVRLNKKRL---VIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        81 d~~~--~~~~~~~~--~~~~v~~i~~~~~~~---~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      ++..  .+.+..+-  +...|+++.|+++..   ..++ |-.+..||+++. ..+.....-.+....+.+... +...+|
T Consensus        97 nlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk-~p~vla  175 (1081)
T KOG0309|consen   97 NLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYK-DPNVLA  175 (1081)
T ss_pred             hhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeeccc-Ccchhh
Confidence            9753  34454443  344899999987653   3333 779999999886 344444333333333344332 233555


Q ss_pred             EeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349          152 VPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  229 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~  229 (342)
                      ..   ....|++||++.+ .++..+++|...|+.++|+. .-..+.+++.||+ ++.||........+... ....+|..
T Consensus       176 ss---hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~t-vkfw~y~kSt~e~~~~v-tt~~piw~  250 (1081)
T KOG0309|consen  176 SS---HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGT-VKFWDYSKSTTESKRTV-TTNFPIWR  250 (1081)
T ss_pred             hc---cCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCc-eeeecccccccccceec-cccCccee
Confidence            43   3467999999876 47789999999999999986 3456889999998 58999875543322211 12334666


Q ss_pred             EEEecCCCcccEEEEE-eCCCcEEEEecCCCCCCC---CCCCccccccccccccccccccccccceeeeccCCCccccEE
Q 019349          230 LSFGQSMQFQDILVAT-SSSGSLHVFSPGFAINQR---RGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  305 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~-s~dg~i~vwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      -.|-|=+.+  +..-- -.++.+.+++.+....+.   ...++-.-+.++......=+|--...    .....+.++-+|
T Consensus       251 ~r~~Pfg~g--~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e----~~~d~d~rdfQL  324 (1081)
T KOG0309|consen  251 GRYLPFGEG--YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKE----CDGDYDSRDFQL  324 (1081)
T ss_pred             ccccccCce--eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccc----ccCCCCccceeE
Confidence            667775542  33222 223356666655432210   00111111112211111223332110    000112335689


Q ss_pred             EEEEeCCcEEEEEEecC
Q 019349          306 SVITYNGYFVEYIFSIN  322 (342)
Q Consensus       306 ~~~~~dg~v~~~~~~~~  322 (342)
                      ++-|.|..++.|.++.+
T Consensus       325 VTWSkD~~lrlWpI~~~  341 (1081)
T KOG0309|consen  325 VTWSKDQTLRLWPIDSQ  341 (1081)
T ss_pred             EEeecCCceEeeeccHH
Confidence            99999999999998754

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.81  E-value=5.8e-06  Score=73.97  Aligned_cols=206  Identities=15%  Similarity=0.126  Sum_probs=134.3

Q ss_pred             EcCCCCEEEEEcCCcEEEEeCCCCcEEE-EEe--------eCC----EEEEE--EcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349           15 FNQDNSGFALSTKDGFKIFDSSTGRLCY-ERA--------VGA----FSIVE--MLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus        15 fs~d~~~la~g~~~g~~v~d~~~~~~~~-~~~--------~~~----~~~~~--~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .|.||+.++-.....+-+||.++.++.. +..        ...    ...++  ...+++.+++++.|        +.-|
T Consensus       274 ~nsDGkrIvFq~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSRG--------kaFi  345 (668)
T COG4946         274 ANSDGKRIVFQNAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSRG--------KAFI  345 (668)
T ss_pred             cCCCCcEEEEecCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEecC--------cEEE
Confidence            3679999988777778999988764321 110        000    00111  12356788888864        5555


Q ss_pred             EECCCCcEEEEEecCCceEEEE--EcCCeEEEEE-CC-eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349           80 FNTTTGTALRELNFLTSILAVR--LNKKRLVIVL-RE-KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~--~~~~~~~~~~-d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      .+.-.+- ...+..+..|+-..  ..++..+++. |+ .+-|||..+++..+..   .+-..+.++..++++..++.+. 
T Consensus       346 ~~~~~~~-~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e---~~lg~I~av~vs~dGK~~vvaN-  420 (668)
T COG4946         346 MRPWDGY-SIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE---KDLGNIEAVKVSPDGKKVVVAN-  420 (668)
T ss_pred             ECCCCCe-eEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee---CCccceEEEEEcCCCcEEEEEc-
Confidence            5433332 23333444454443  3556667766 55 9999999887644332   2234577888889999888877 


Q ss_pred             CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCc---EEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349          156 TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT---IIRVFLVSEATKSYSFRRGTYPSTIFSLSF  232 (342)
Q Consensus       156 ~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~---~irlwd~~~~~~~~~~~~~~~~~~v~~l~f  232 (342)
                       ....+.+.|+.++.....-+...+-|+..+|+|+++++|-+--+|-   -|+++|+..++....-..   .+.=.+-||
T Consensus       421 -dr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaF  496 (668)
T COG4946         421 -DRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAF  496 (668)
T ss_pred             -CceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---cccccCccc
Confidence             5788999999999765544556778999999999999999977763   378999987765432211   122344578


Q ss_pred             ecCCC
Q 019349          233 GQSMQ  237 (342)
Q Consensus       233 s~d~~  237 (342)
                      .||++
T Consensus       497 D~d~r  501 (668)
T COG4946         497 DPDGR  501 (668)
T ss_pred             CCCCc
Confidence            88887

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.80  E-value=1.9e-08  Score=90.98  Aligned_cols=177  Identities=15%  Similarity=0.201  Sum_probs=121.5

Q ss_pred             CCCeEEEEECCC-------CcEEEEEe-cCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCC---CCceEEE
Q 019349           73 SPRRLCLFNTTT-------GTALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVP---NLKGLCA  140 (342)
Q Consensus        73 ~d~~i~iwd~~~-------~~~~~~~~-~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~  140 (342)
                      .|++|++|.++.       ..|..+++ +..+|.++.|-.+...+++ |+-|.+||---++++..+...+   ....+.+
T Consensus       755 kDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikc  834 (1034)
T KOG4190|consen  755 KDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKC  834 (1034)
T ss_pred             CCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeeccCcceeecccccchhHhhhcCcccCCCceeEe
Confidence            699999999863       12334443 3458999999887766666 9999999987777665543222   1122333


Q ss_pred             EeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe-----cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID-----AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS  215 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-----~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~  215 (342)
                      +- +-+...+ .++.....+|+++|.+..+-+..++     +....+.++++.+.|+++|.|=..|.+ -+.|.++|+.+
T Consensus       835 l~-nv~~~il-iAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci-~~LDaR~G~vI  911 (1034)
T KOG4190|consen  835 LE-NVDRHIL-IAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCI-AILDARNGKVI  911 (1034)
T ss_pred             cc-cCcchhe-eeeccchhhheeeecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcE-EEEecCCCcee
Confidence            32 2223233 3332367899999999887655544     445668999999999999999889985 59999999998


Q ss_pred             EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEE-EecCC
Q 019349          216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHV-FSPGF  258 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~v-wd~~~  258 (342)
                      ..++.-  .+....++- |..+   .|+....|.++.| |-.-.
T Consensus       912 Nswrpm--ecdllqlaa-psdq---~L~~saldHslaVnWhald  949 (1034)
T KOG4190|consen  912 NSWRPM--ECDLLQLAA-PSDQ---ALAQSALDHSLAVNWHALD  949 (1034)
T ss_pred             ccCCcc--cchhhhhcC-chhH---HHHhhcccceeEeeehhcC
Confidence            887532  233444443 5555   7888888999988 86433

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.79  E-value=4.8e-08  Score=98.96  Aligned_cols=187  Identities=9%  Similarity=0.069  Sum_probs=134.0

Q ss_pred             CceEEEEEcCCeEEEE---ECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce
Q 019349           95 TSILAVRLNKKRLVIV---LREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS  171 (342)
Q Consensus        95 ~~v~~i~~~~~~~~~~---~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~  171 (342)
                      ..|+.+.-+|......   .|+.+++|....++.+..+++..+ ..+..+.++.+|.....+.  .||.+-+|... .++
T Consensus      2209 ~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~-s~vtr~~f~~qGnk~~i~d--~dg~l~l~q~~-pk~ 2284 (2439)
T KOG1064|consen 2209 ENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGN-SRVTRSRFNHQGNKFGIVD--GDGDLSLWQAS-PKP 2284 (2439)
T ss_pred             CceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCc-chhhhhhhcccCCceeeec--cCCceeecccC-Ccc
Confidence            4667776666543332   289999999999988888877655 4555555555555555555  58999999987 677


Q ss_pred             eEEEecccCCeeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC
Q 019349          172 HCEIDAHQAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG  249 (342)
Q Consensus       172 ~~~~~~h~~~v~~i~~s~dg~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg  249 (342)
                      ....+.|....+..+|-.  ..+++++  .|+.-+.+||..-.....-+. ..|.+.++++++-|..+   +|++|+.+|
T Consensus      2285 ~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~q---llisggr~G 2358 (2439)
T KOG1064|consen 2285 YTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQ---LLISGGRKG 2358 (2439)
T ss_pred             eeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcce---EEEecCCcC
Confidence            888899999999999975  6777774  344446899975322111111 23455689999999999   999999999


Q ss_pred             cEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          250 SLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       250 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      .|++||++..+....           .     ..|+ ..              .+++++++.|.++||+++..
T Consensus      2359 ~v~l~D~rqrql~h~-----------~-----~~~~-~~--------------~~f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2359 EVCLFDIRQRQLRHT-----------F-----QALD-TR--------------EYFVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred             cEEEeehHHHHHHHH-----------h-----hhhh-hh--------------heeeccCcccceEEEEcccc
Confidence            999999987654221           0     1233 22              68999999999999998754

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=98.76  E-value=2.4e-07  Score=82.66  Aligned_cols=252  Identities=12%  Similarity=0.097  Sum_probs=148.8

Q ss_pred             eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEec--CCceEEEEE---cCCeEEEEE--CCeEEE
Q 019349           45 AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF--LTSILAVRL---NKKRLVIVL--REKTYI  117 (342)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~i~~---~~~~~~~~~--d~~i~i  117 (342)
                      |.+-+..+.+...+..++..+       .|.+|.+||..++.....+.-  ...|....|   +.+..++..  |+++++
T Consensus       141 H~GcVntV~FN~~Gd~l~SgS-------DD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~  213 (559)
T KOG1334|consen  141 HKGCVNTVHFNQRGDVLASGS-------DDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV  213 (559)
T ss_pred             CCCccceeeecccCceeeccC-------ccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence            334455555555555554333       599999999999888776642  335544444   334444433  888888


Q ss_pred             EECC-CCcee--eEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE---ecccC---CeeEEEEC
Q 019349          118 YDAN-TLAIL--DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI---DAHQA---PLAAIVLS  188 (342)
Q Consensus       118 ~d~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~---~~h~~---~v~~i~~s  188 (342)
                      =.+- ++.+.  ..+..|.++....++-+.... -+.++|  .|+.+.-+|+++..+...+   +.+..   ....|+..
T Consensus       214 s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~g--eD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~  290 (559)
T KOG1334|consen  214 SEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCG--EDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVD  290 (559)
T ss_pred             eeeccccceecceecccccCccceeeecCCCCC-cccccc--cccceeeeeeccCCccceeeeeccCCccceeeeeEecC
Confidence            7663 33332  223444555555566554333 344555  6899999999877654333   34444   57889999


Q ss_pred             CCCC-EEEEEeCCCcEEEEEEcCCCeeE------EEeccC----cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          189 SNGM-YIATASEQGTIIRVFLVSEATKS------YSFRRG----TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       189 ~dg~-~lat~s~dg~~irlwd~~~~~~~------~~~~~~----~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      |-.. .+|+|+.|. ..|++|.+.-.+.      ..|-..    ..+..|++++|+.++.   -|+++..|-.|++|.-.
T Consensus       291 P~nt~~faVgG~dq-f~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~s---ElLaSYnDe~IYLF~~~  366 (559)
T KOG1334|consen  291 PRNTNEFAVGGSDQ-FARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGS---ELLASYNDEDIYLFNKS  366 (559)
T ss_pred             CCCccccccCChhh-hhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCcc---ceeeeecccceEEeccc
Confidence            9654 899999996 4699998754322      222211    2234599999998887   57777788899999533


Q ss_pred             CCCC--CCCCCCcccccccccccccccccccccccee--eecc-CCCccccEEEEEEeCCcEEEEEEe
Q 019349          258 FAIN--QRRGGRTSSILGSILPESVNEVLDPADHHVL--RNAF-PAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       258 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      ...-  +-....    ...+.+.    +  ..+|+-.  +.-+ =|||+.+++++||.=|.|.+|+-.
T Consensus       367 ~~~G~~p~~~s~----~~~~~k~----v--YKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~  424 (559)
T KOG1334|consen  367 MGDGSEPDPSSP----REQYVKR----V--YKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKK  424 (559)
T ss_pred             cccCCCCCCCcc----hhhccch----h--hcccccccccceeeeccCccceEEecCccceEEEEecc
Confidence            2211  110000    0011111    0  0111111  0111 146777999999999999999643

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.76  E-value=5.9e-07  Score=76.99  Aligned_cols=193  Identities=14%  Similarity=0.191  Sum_probs=115.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcE-EEEeCC----CCc--EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGF-KIFDSS----TGR--LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      +.++++++++++...|++|-++|- .=|.+.    ...  ..+..+...+..+-+......++..+-       |..+ .
T Consensus        68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~-------dk~~-~  139 (404)
T KOG1409|consen   68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK-------DKQF-A  139 (404)
T ss_pred             CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc-------ccce-E
Confidence            568899999999999999988873 444332    111  122223333333333333344433332       4443 4


Q ss_pred             EE-CCCCcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEEC--CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349           80 FN-TTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDA--NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        80 wd-~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      |- .+.+..+..+.+.....+..+.-....+.. .+.|.+-.+  ....++.++..+  ...+.++++++....|.++. 
T Consensus       140 ~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h--~~~~~~l~Wd~~~~~LfSg~-  216 (404)
T KOG1409|consen  140 WHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGH--TGEVTCLKWDPGQRLLFSGA-  216 (404)
T ss_pred             EEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCc--ccceEEEEEcCCCcEEEecc-
Confidence            44 345555544433222222111111111111 344444433  233455555443  44688899998877777766 


Q ss_pred             CCccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349          156 TTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       156 ~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~  212 (342)
                       .|..|.+||+.-.+ ....+.+|...|..+..-+--+.|.++++||.+ -+|+.+..
T Consensus       217 -~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i-~~w~mn~~  272 (404)
T KOG1409|consen  217 -SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGI-VVWNMNVK  272 (404)
T ss_pred             -ccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeE-EEEeccce
Confidence             58899999986554 345677899999999998888999999999975 69998654

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.74  E-value=5.2e-07  Score=76.43  Aligned_cols=282  Identities=12%  Similarity=0.160  Sum_probs=153.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc---E--E--EEEee------------CCEEEEEEcCCC--CeEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR---L--C--YERAV------------GAFSIVEMLYSS--SLLAI   63 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~---~--~--~~~~~------------~~~~~~~~~~~~--~~~~~   63 (342)
                      ....|+++.|...|.+|++|...| +.+|.-+...   .  .  ++.+.            ..+..+.|....  +.+++
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            446799999999999999999877 5777543322   0  0  11110            123344554443  23334


Q ss_pred             EcCCCCCCCCCCeEEEEECCCCc--EEEEEec--------CCceEEE------EEcCCeEEEEE-CCeEEEEECCCCcee
Q 019349           64 VGAGEQPSLSPRRLCLFNTTTGT--ALRELNF--------LTSILAV------RLNKKRLVIVL-REKTYIYDANTLAIL  126 (342)
Q Consensus        64 ~~~g~~~~~~d~~i~iwd~~~~~--~~~~~~~--------~~~v~~i------~~~~~~~~~~~-d~~i~i~d~~~~~~~  126 (342)
                      + +      .|++|++|.+....  .+.+-..        .+++++.      .++....+++. ..+            
T Consensus       105 s-t------NdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~r------------  165 (460)
T COG5170         105 S-T------NDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCR------------  165 (460)
T ss_pred             e-c------CCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccce------------
Confidence            4 3      49999999986542  2221111        1111111      01111111111 111            


Q ss_pred             eEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce---eEEEeccc-----CCeeEEEECCCC-CEEEEE
Q 019349          127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---HCEIDAHQ-----APLAAIVLSSNG-MYIATA  197 (342)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~---~~~~~~h~-----~~v~~i~~s~dg-~~lat~  197 (342)
                        +....++.-+.+++.+.|...+.++.   +=.|.+|++.-...   +.-++.|.     .-|++..|+|.. +.+.-.
T Consensus       166 --vyaNaH~yhiNSiS~NsD~et~lSaD---dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYS  240 (460)
T COG5170         166 --VYANAHPYHINSISFNSDKETLLSAD---DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYS  240 (460)
T ss_pred             --eccccceeEeeeeeecCchheeeecc---ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEe
Confidence              11123344566777777777777654   67899999865432   23344443     458889999954 556667


Q ss_pred             eCCCcEEEEEEcCCCe------eEEEec-cCcC-------ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          198 SEQGTIIRVFLVSEAT------KSYSFR-RGTY-------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       198 s~dg~~irlwd~~~~~------~~~~~~-~~~~-------~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      +..|+ |++-|++...      .+.+.. .+..       ...|..+.|+++|+   ++++- +-.+|+|||++..+.+-
T Consensus       241 sSkG~-Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngr---yIlsR-dyltvkiwDvnm~k~pi  315 (460)
T COG5170         241 SSKGE-IKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGR---YILSR-DYLTVKIWDVNMAKNPI  315 (460)
T ss_pred             cCCCc-EEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCc---EEEEe-ccceEEEEecccccCCc
Confidence            77887 6899998432      111111 1110       12378899999998   66644 45699999998776543


Q ss_pred             C-CCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          264 R-GGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       264 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      . .......+. -+.+    +..-+- -...+.+.|..++..+++|+....+-+|..+..
T Consensus       316 kTi~~h~~l~~-~l~d----~YEnDa-ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ss  369 (460)
T COG5170         316 KTIPMHCDLMD-ELND----VYENDA-IFDKFEISFSGDDKHVLSGSYSNNFGIYPTDSS  369 (460)
T ss_pred             eeechHHHHHH-HHHh----hhhccc-eeeeEEEEecCCcccccccccccceeeeccccC
Confidence            1 111111000 0000    111000 011134455666688888888888888875443

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.73  E-value=4e-07  Score=75.23  Aligned_cols=96  Identities=17%  Similarity=0.200  Sum_probs=71.7

Q ss_pred             CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce-eEEEecccCCeeEEEECC-
Q 019349          112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-HCEIDAHQAPLAAIVLSS-  189 (342)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~-~~~~~~h~~~v~~i~~s~-  189 (342)
                      -+..++|+++..+.+..-  ......+.+++.+|..+.+.++|. .+|.+.+||.++... +..+++|+.+|+.|-|+| 
T Consensus       158 ~d~~~a~~~~p~~t~~~~--~~~~~~v~~l~~hp~qq~~v~cgt-~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk  234 (319)
T KOG4714|consen  158 QDNFYANTLDPIKTLIPS--KKALDAVTALCSHPAQQHLVCCGT-DDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPK  234 (319)
T ss_pred             ccceeeeccccccccccc--ccccccchhhhCCcccccEEEEec-CCCeEEEEEcccccchHHHHHHhhhhhhheeccCC
Confidence            456777887654332111  112234777888887777777776 799999999998753 456789999999999999 


Q ss_pred             CCCEEEEEeCCCcEEEEEEcCC
Q 019349          190 NGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       190 dg~~lat~s~dg~~irlwd~~~  211 (342)
                      ++..|.|+++||.++ -||..+
T Consensus       235 ~p~~Lft~sedGslw-~wdas~  255 (319)
T KOG4714|consen  235 NPEHLFTCSEDGSLW-HWDAST  255 (319)
T ss_pred             CchheeEecCCCcEE-EEcCCC
Confidence            678999999999976 688754

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.70  E-value=3.4e-05  Score=79.28  Aligned_cols=234  Identities=14%  Similarity=0.088  Sum_probs=126.8

Q ss_pred             CCCeEEEEECCCCcEEEEEecC---------------CceEEEEEcCC--eEEEEE--CCeEEEEECCCCceeeEEeCCC
Q 019349           73 SPRRLCLFNTTTGTALRELNFL---------------TSILAVRLNKK--RLVIVL--REKTYIYDANTLAILDTIDTVP  133 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~---------------~~v~~i~~~~~--~~~~~~--d~~i~i~d~~~~~~~~~~~~~~  133 (342)
                      ..+.|+++|.. ++.+..+...               ....+++++++  .++++.  .+.|+++|+.++. +.++....
T Consensus       588 ~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~-V~tlag~G  665 (1057)
T PLN02919        588 NHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET-VRTLAGNG  665 (1057)
T ss_pred             CCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE-EEEEeccC
Confidence            47889999975 4444333221               12467788654  355554  3589999987754 33331100


Q ss_pred             --------C-------CceEEEEeeCC-CccEEEEeCCCCccEEEEEEccCCceeEEEec---------------ccCCe
Q 019349          134 --------N-------LKGLCAFSPSL-NACFLAVPASTTKGSVLVYNVMELHSHCEIDA---------------HQAPL  182 (342)
Q Consensus       134 --------~-------~~~~~~~~~~~-~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~---------------h~~~v  182 (342)
                              .       -.....++.++ ++...++..  .++.|++||..++... .+.+               .-...
T Consensus       666 ~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~--~~~~I~v~d~~~g~v~-~~~G~G~~~~~~g~~~~~~~~~~P  742 (1057)
T PLN02919        666 TKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA--GQHQIWEYNISDGVTR-VFSGDGYERNLNGSSGTSTSFAQP  742 (1057)
T ss_pred             cccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC--CCCeEEEEECCCCeEE-EEecCCccccCCCCccccccccCc
Confidence                    0       00112344555 333333333  4789999998776432 2211               11235


Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe-----------ccCcC--------ceeEEEEEEecCCCcccEEE
Q 019349          183 AAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF-----------RRGTY--------PSTIFSLSFGQSMQFQDILV  243 (342)
Q Consensus       183 ~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~-----------~~~~~--------~~~v~~l~fs~d~~~~~~l~  243 (342)
                      +.|+++|+|++|..+..+...|++||+.++......           .-+..        -....+++|++++.   +++
T Consensus       743 ~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~---LYV  819 (1057)
T PLN02919        743 SGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQ---IYV  819 (1057)
T ss_pred             cEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCc---EEE
Confidence            679999999866555544334799999876532110           00000        01246899999998   888


Q ss_pred             EEeCCCcEEEEecCCCCCCCCCCC-ccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          244 ATSSSGSLHVFSPGFAINQRRGGR-TSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       244 ~~s~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      +-+.+++|++||.++......... ..++..+.  ......-.|.       .+++.++++.+++-+.++.|++|++...
T Consensus       820 ADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~--~~~a~l~~P~-------GIavd~dG~lyVaDt~Nn~Irvid~~~~  890 (1057)
T PLN02919        820 ADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGK--ALKAQLSEPA-------GLALGENGRLFVADTNNSLIRYLDLNKG  890 (1057)
T ss_pred             EECCCCEEEEEECCCCeEEEEeccCCcCCCCCc--ccccccCCce-------EEEEeCCCCEEEEECCCCEEEEEECCCC
Confidence            889999999999876542110000 00000000  0000011111       1233445566666677899999987654


Q ss_pred             C
Q 019349          323 N  323 (342)
Q Consensus       323 ~  323 (342)
                      +
T Consensus       891 ~  891 (1057)
T PLN02919        891 E  891 (1057)
T ss_pred             c
Confidence            3

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.68  E-value=0.00014  Score=62.54  Aligned_cols=214  Identities=14%  Similarity=0.095  Sum_probs=127.6

Q ss_pred             EEEEcC-CCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEE
Q 019349           12 FVSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR   89 (342)
Q Consensus        12 ~l~fs~-d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~   89 (342)
                      +..|.+ ++.++.+....+ +..|+..+++........... +.+....+.+.++..        +.+.++|..+++...
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~~~G-~~~~~~~g~l~v~~~--------~~~~~~d~~~g~~~~   74 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPGPNG-MAFDRPDGRLYVADS--------GGIAVVDPDTGKVTV   74 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSSEEE-EEEECTTSEEEEEET--------TCEEEEETTTTEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCCCce-EEEEccCCEEEEEEc--------CceEEEecCCCcEEE
Confidence            578998 666666665554 688898888665433223333 333323355544443        456667998886544


Q ss_pred             EEec------CCceEEEEEcCCeEEEEEC-----------CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349           90 ELNF------LTSILAVRLNKKRLVIVLR-----------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (342)
Q Consensus        90 ~~~~------~~~v~~i~~~~~~~~~~~d-----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  152 (342)
                      ....      .....++++.+++.+.+++           +.++.++.. ++.......-   .....+++++++..|.+
T Consensus        75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~---~~pNGi~~s~dg~~lyv  150 (246)
T PF08450_consen   75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGL---GFPNGIAFSPDGKTLYV  150 (246)
T ss_dssp             EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEE---SSEEEEEEETTSSEEEE
T ss_pred             EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCc---ccccceEECCcchheee
Confidence            3332      1267889999887655541           346667766 4433222221   12335566677777665


Q ss_pred             eCCCCccEEEEEEccCCce----eEEE---ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCce
Q 019349          153 PASTTKGSVLVYNVMELHS----HCEI---DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  225 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~~----~~~~---~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~  225 (342)
                      +.. ..+.|..+++.....    ...+   ..-.+..-.+++..+|++.++....+. |.++|.. |+.+..+....  .
T Consensus       151 ~ds-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~-I~~~~p~-G~~~~~i~~p~--~  225 (246)
T PF08450_consen  151 ADS-FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGR-IVVFDPD-GKLLREIELPV--P  225 (246)
T ss_dssp             EET-TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTE-EEEEETT-SCEEEEEE-SS--S
T ss_pred             ccc-ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCE-EEEECCC-ccEEEEEcCCC--C
Confidence            554 578899999863321    1222   222224788999999998887766676 5689986 98888776442  3


Q ss_pred             eEEEEEEe-cCCCcccEEEEEe
Q 019349          226 TIFSLSFG-QSMQFQDILVATS  246 (342)
Q Consensus       226 ~v~~l~fs-~d~~~~~~l~~~s  246 (342)
                      .+++++|. ++.+   .|...+
T Consensus       226 ~~t~~~fgg~~~~---~L~vTt  244 (246)
T PF08450_consen  226 RPTNCAFGGPDGK---TLYVTT  244 (246)
T ss_dssp             SEEEEEEESTTSS---EEEEEE
T ss_pred             CEEEEEEECCCCC---EEEEEe
Confidence            58999995 5655   555544

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.66  E-value=3.3e-05  Score=78.05  Aligned_cols=300  Identities=13%  Similarity=0.136  Sum_probs=157.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCC-CCCCCCeEE-----
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ-PSLSPRRLC-----   78 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~d~~i~-----   78 (342)
                      .+..|.+++||||+..|+..+.++ +.+-+ .++..+.+....     .-.+..+..+.+|-|++ +++.-..-|     
T Consensus       119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt-~~fd~i~E~~l~-----~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~  192 (928)
T PF04762_consen  119 VDSGILAASWSPDEELLALVTGEGNLLLMT-RDFDPISEVPLD-----SDDFGESKHVSVGWGKKETQFHGSAGKAAARQ  192 (928)
T ss_pred             EcCcEEEEEECCCcCEEEEEeCCCEEEEEe-ccceEEEEeecC-----ccccCCCceeeeccCcccCccCcchhhhhhhh
Confidence            467899999999999998887665 33332 333333332211     11112223344444432 111100000     


Q ss_pred             EEECCCC-cEEEEEecCCceEEEEEcCCeEEEE--E-----C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349           79 LFNTTTG-TALRELNFLTSILAVRLNKKRLVIV--L-----R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        79 iwd~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~--~-----d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
                      +=|.... .....+.....-..|+|-+|+-+++  +     +  ..++||+-+ |.+...-+.  -..---++++.|.|.
T Consensus       193 ~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~--v~gLe~~l~WrPsG~  269 (928)
T PF04762_consen  193 LRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEP--VDGLEGALSWRPSGN  269 (928)
T ss_pred             ccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEecccc--CCCccCCccCCCCCC
Confidence            0000000 0001111223445677777654332  2     2  478999965 544433221  111233678888899


Q ss_pred             EEEEeCCC-CccEEEEEEccCCceeEEE----ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe--eEEEeccC
Q 019349          149 FLAVPAST-TKGSVLVYNVMELHSHCEI----DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT--KSYSFRRG  221 (342)
Q Consensus       149 ~l~~~~~~-~~g~i~iwd~~~~~~~~~~----~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~--~~~~~~~~  221 (342)
                      +||++-+. ....|.+|+ ++|-.-..|    ......|..+.|++|+..||.--.|.  |++|-..+..  +.+++.-.
T Consensus       270 lIA~~q~~~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~--vqLWt~~NYHWYLKqei~~~  346 (928)
T PF04762_consen  270 LIASSQRLPDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR--VQLWTRSNYHWYLKQEIRFS  346 (928)
T ss_pred             EEEEEEEcCCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC--ceEEEeeCCEEEEEEEEEcc
Confidence            99987532 124466666 334322222    23456899999999999999988775  6899988764  23333321


Q ss_pred             cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCC--CCCccccc--------------cccccccc-cccc
Q 019349          222 TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR--GGRTSSIL--------------GSILPESV-NEVL  284 (342)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~--~~~~~~~~--------------~~~~~~~~-~~~~  284 (342)
                       ....+..+.|+|...  ..|...+.+|.+..++..-......  .....+..              ....|+.. ....
T Consensus       347 -~~~~~~~~~Wdpe~p--~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l  423 (928)
T PF04762_consen  347 -SSESVNFVKWDPEKP--LRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYEL  423 (928)
T ss_pred             -CCCCCCceEECCCCC--CEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEE
Confidence             122344589999876  2788888878887666533211110  00011111              01122211 0000


Q ss_pred             cccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349          285 DPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                      .   ....+..++|.+....+++...||.+.+|.++...
T Consensus       424 ~---~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~  459 (928)
T PF04762_consen  424 E---LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKN  459 (928)
T ss_pred             c---CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCC
Confidence            0   01123455666666679999999999999976544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=5.9e-06  Score=75.21  Aligned_cols=235  Identities=15%  Similarity=0.194  Sum_probs=133.5

Q ss_pred             CCeEEEEEcCCCCEEEEEc----------C--CcEEEEeCCCCcEEEEEee-----CCEEEEEEcCCCCeEEEEcCCCCC
Q 019349            8 YPVFFVSFNQDNSGFALST----------K--DGFKIFDSSTGRLCYERAV-----GAFSIVEMLYSSSLLAIVGAGEQP   70 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~----------~--~g~~v~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~   70 (342)
                      ..|..+.|||..+||++=+          .  +.++|||+.+|.+......     ..-.+..|.++..++|-..+    
T Consensus       250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~----  325 (698)
T KOG2314|consen  250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG----  325 (698)
T ss_pred             CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc----
Confidence            4688999999999998743          1  2379999999977654432     23456788889999887765    


Q ss_pred             CCCCCeEEEEECCCCcEEEEEec-CCceEEEEEcCCeEEEEE-------------------CCeE---EEEECCC-----
Q 019349           71 SLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL-------------------REKT---YIYDANT-----  122 (342)
Q Consensus        71 ~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~-------------------d~~i---~i~d~~~-----  122 (342)
                          +.|.|++..+-..+..-.. .+.|++..|+|...++|.                   ...|   .++++.+     
T Consensus       326 ----~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhW  401 (698)
T KOG2314|consen  326 ----NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHW  401 (698)
T ss_pred             ----ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEe
Confidence                5777777654222211111 123444444443333221                   0011   1121111     


Q ss_pred             ---Ccee---------------------eEEeCC-------CCCceEEEEeeCCCccEEE-EeCCCCccEEEEEEccC-C
Q 019349          123 ---LAIL---------------------DTIDTV-------PNLKGLCAFSPSLNACFLA-VPASTTKGSVLVYNVME-L  169 (342)
Q Consensus       123 ---~~~~---------------------~~~~~~-------~~~~~~~~~~~~~~~~~l~-~~~~~~~g~i~iwd~~~-~  169 (342)
                         +..+                     ..+...       .-...+.++++.|.+..++ ..|.+...++.+|-+++ .
T Consensus       402 Qk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~  481 (698)
T KOG2314|consen  402 QKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI  481 (698)
T ss_pred             ccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC
Confidence               1000                     000000       0012356777777665544 33444567899998873 2


Q ss_pred             c---eeEEEecccCCeeEEEECCCCCEEEEEe---CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEE
Q 019349          170 H---SHCEIDAHQAPLAAIVLSSNGMYIATAS---EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV  243 (342)
Q Consensus       170 ~---~~~~~~~h~~~v~~i~~s~dg~~lat~s---~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~  243 (342)
                      .   .+..+.  +...+.+.|+|.|++++.+.   ..|. +..+|+.-.... ... .......+.+.|.|.|+   |++
T Consensus       482 ~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~-l~F~D~~~a~~k-~~~-~~eh~~at~veWDPtGR---Yvv  553 (698)
T KOG2314|consen  482 KKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGD-LEFYDTDYADLK-DTA-SPEHFAATEVEWDPTGR---YVV  553 (698)
T ss_pred             Cchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccc-eEEEecchhhhh-hcc-CccccccccceECCCCC---EEE
Confidence            2   233333  34568899999999998875   3465 468888632211 111 11111256788999999   999


Q ss_pred             EEeC------CCcEEEEecCC
Q 019349          244 ATSS------SGSLHVFSPGF  258 (342)
Q Consensus       244 ~~s~------dg~i~vwd~~~  258 (342)
                      +++.      |.--+||++..
T Consensus       554 T~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  554 TSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             EeeehhhhccccceEEEEeec
Confidence            8876      44567787654

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.63  E-value=2.7e-05  Score=70.27  Aligned_cols=233  Identities=12%  Similarity=0.155  Sum_probs=144.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC----------------CcEEEEeCCCCcEEEEEeeCCE-----EEEEEcCCCCeEEEEc
Q 019349            7 SYPVFFVSFNQDNSGFALSTK----------------DGFKIFDSSTGRLCYERAVGAF-----SIVEMLYSSSLLAIVG   65 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~----------------~g~~v~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~   65 (342)
                      -..|..+.|+|.+++|.+=+.                +...+||+.++.+++.......     ..+.+..+.++.+-+.
T Consensus        71 ~~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv  150 (561)
T COG5354          71 HPDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV  150 (561)
T ss_pred             cCCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc
Confidence            356889999999999987432                2357999999998877654222     2566666777776554


Q ss_pred             CCCCCCCCCCeEEEEECCCCcEE-EEE-ec-CCceEEEEEcCC----eEEEEE------CCeEEEEECCCCceeeEEeCC
Q 019349           66 AGEQPSLSPRRLCLFNTTTGTAL-REL-NF-LTSILAVRLNKK----RLVIVL------REKTYIYDANTLAILDTIDTV  132 (342)
Q Consensus        66 ~g~~~~~~d~~i~iwd~~~~~~~-~~~-~~-~~~v~~i~~~~~----~~~~~~------d~~i~i~d~~~~~~~~~~~~~  132 (342)
                      +        ..++++++ ++... ..+ .. ...|....++|.    .++...      ..++++|.+...+.+.+....
T Consensus       151 ~--------~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lf  221 (561)
T COG5354         151 G--------SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLF  221 (561)
T ss_pred             c--------CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeE
Confidence            3        58999997 33211 111 11 245677777665    222222      458999999766554432111


Q ss_pred             CCCceEEEEeeCCCccEEEEeC-------CC--CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe--CCC
Q 019349          133 PNLKGLCAFSPSLNACFLAVPA-------ST--TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS--EQG  201 (342)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~-------~~--~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s--~dg  201 (342)
                      .  ..-|.+.+.+.+.+|++--       ..  ....+.|+++.... +.....-.++|...+|+|.++.+++.+  .+.
T Consensus       222 k--~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa  298 (561)
T COG5354         222 K--VSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLKDPVHDFTWEPLSSRFAVISGYMPA  298 (561)
T ss_pred             e--ecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccc-cceeccccccceeeeecccCCceeEEeccccc
Confidence            0  1123344444444433210       00  13568888887433 222335688999999999998887766  444


Q ss_pred             cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC---CcEEEEecCCCC
Q 019349          202 TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAI  260 (342)
Q Consensus       202 ~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd~~~~~  260 (342)
                      . +.++|++.. ...-+..+    .=+.+.|||.++   +++.++-|   |.|-+||.....
T Consensus       299 ~-~s~~~lr~N-l~~~~Pe~----~rNT~~fsp~~r---~il~agF~nl~gni~i~~~~~rf  351 (561)
T COG5354         299 S-VSVFDLRGN-LRFYFPEQ----KRNTIFFSPHER---YILFAGFDNLQGNIEIFDPAGRF  351 (561)
T ss_pred             c-eeecccccc-eEEecCCc----ccccccccCccc---EEEEecCCccccceEEeccCCce
Confidence            4 568999754 54444322    234578999999   88887766   579999976543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.63  E-value=1.5e-05  Score=66.40  Aligned_cols=184  Identities=13%  Similarity=-0.005  Sum_probs=119.3

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCce------EEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC
Q 019349           73 SPRRLCLFNTTTGTALRELNFLTSI------LAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL  145 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~~v------~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (342)
                      ..+...+|...+.+....+ .....      +..+-..-.+.+++ |.++++.+++-+..-...  +........++.++
T Consensus        92 ~~g~fd~~~~~tn~~h~~~-cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~--h~~~~~~ns~~~sn  168 (344)
T KOG4532|consen   92 ASGQFDLFACNTNDGHLYQ-CDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV--HNQNLTQNSLHYSN  168 (344)
T ss_pred             ccceeeeecccCcccceee-ecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee--eccccceeeeEEcC
Confidence            4789999998876543222 22222      23333444566666 788888888654222222  11112355667778


Q ss_pred             CccEEEEeCCCCccEEEEEEccCC-ce-eEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe---c
Q 019349          146 NACFLAVPASTTKGSVLVYNVMEL-HS-HCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF---R  219 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~~-~~-~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~---~  219 (342)
                      ++.++++.|  ....|..|.+... +. +... ..-++.=-+..|+.....+|+++.||++ -|||++.......+   .
T Consensus       169 d~~~~~~Vg--ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~-~I~DVR~~~tpm~~~sst  245 (344)
T KOG4532|consen  169 DPSWGSSVG--DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTC-AIYDVRNMATPMAEISST  245 (344)
T ss_pred             CCceEEEec--CCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcE-EEEEecccccchhhhccc
Confidence            888999998  4688999988543 22 2212 2233445678899999999999999996 69999876433322   2


Q ss_pred             cCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          220 RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      +.++.+.+..+.|++-|. .++|.-.-.-+.+++-|+++.....
T Consensus       246 rp~hnGa~R~c~Fsl~g~-lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  246 RPHHNGAFRVCRFSLYGL-LDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             CCCCCCceEEEEecCCCc-ceEEEEecCcceEEEEEcccCceee
Confidence            233556799999998664 2467766667889999999876543

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.62  E-value=6.9e-06  Score=69.19  Aligned_cols=142  Identities=11%  Similarity=0.098  Sum_probs=91.9

Q ss_pred             CCeEEEEECCCCceeeEEeCCC----CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC--ceeEEEecccCCeeEE
Q 019349          112 REKTYIYDANTLAILDTIDTVP----NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL--HSHCEIDAHQAPLAAI  185 (342)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~--~~~~~~~~h~~~v~~i  185 (342)
                      .+.|.+|...-......++.-.    ......++.+++-+.-+++..  .+|.+.+-+....  +.++.+++|.-+....
T Consensus        94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~--s~G~~~~v~~t~~~le~vq~wk~He~E~Wta  171 (339)
T KOG0280|consen   94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSD--SRGSISGVYETEMVLEKVQTWKVHEFEAWTA  171 (339)
T ss_pred             cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEc--CCCcEEEEecceeeeeecccccccceeeeee
Confidence            6778877664322222221110    011133455555555666665  4788886554443  3455889999999999


Q ss_pred             EECC-CCCEEEEEeCCCcEEEEEEcC-CCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          186 VLSS-NGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       186 ~~s~-dg~~lat~s~dg~~irlwd~~-~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      .|+. +-+.+.|||+||.+ .-||++ .++.+..- ...+...|.++.=+|...  .++++|+-|-.|++||.+.-
T Consensus       172 ~f~~~~pnlvytGgDD~~l-~~~D~R~p~~~i~~n-~kvH~~GV~SI~ss~~~~--~~I~TGsYDe~i~~~DtRnm  243 (339)
T KOG0280|consen  172 KFSDKEPNLVYTGGDDGSL-SCWDIRIPKTFIWHN-SKVHTSGVVSIYSSPPKP--TYIATGSYDECIRVLDTRNM  243 (339)
T ss_pred             ecccCCCceEEecCCCceE-EEEEecCCcceeeec-ceeeecceEEEecCCCCC--ceEEEeccccceeeeehhcc
Confidence            9986 44789999999985 799999 34443321 112344588887776543  29999999999999998854

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.58  E-value=5.2e-05  Score=68.03  Aligned_cols=116  Identities=17%  Similarity=0.226  Sum_probs=87.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc--EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG--FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g--~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .+.+.|+...+..+++-++.|..+|  +-|||..+++.. .+...+.+..+....++.+++++-.       ...|-+.|
T Consensus       357 ~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNd-------r~el~vid  429 (668)
T COG4946         357 GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVAND-------RFELWVID  429 (668)
T ss_pred             CCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcC-------ceEEEEEE
Confidence            4567799999999999999999887  699999999854 4445578888888888877766542       55677778


Q ss_pred             CCCCcEEEE-EecCCceEEEEEcCCeEEEEE-------CCeEEEEECCCCceee
Q 019349           82 TTTGTALRE-LNFLTSILAVRLNKKRLVIVL-------REKTYIYDANTLAILD  127 (342)
Q Consensus        82 ~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~  127 (342)
                      +.+|....- .....-|+.+.|+++...+|-       ...|++||+.+++...
T Consensus       430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~  483 (668)
T COG4946         430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYD  483 (668)
T ss_pred             ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEE
Confidence            888875432 223456899999999777765       3589999998876553

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.57  E-value=5.5e-05  Score=70.08  Aligned_cols=191  Identities=14%  Similarity=0.103  Sum_probs=115.6

Q ss_pred             CeEEEEEcCCCCE-EEE-EcCCc---EEEEeCCCCcEEEEE-eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            9 PVFFVSFNQDNSG-FAL-STKDG---FKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         9 ~V~~l~fs~d~~~-la~-g~~~g---~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      .+..-+|+|||+. ++. ...++   +.++|+.+++...-. ..+......+.++++.+++....    ..+..|.++|+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~----~g~~~Iy~~dl  264 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAP----KGQPDIYLYDT  264 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEcc----CCCcEEEEEEC
Confidence            6778999999985 554 33322   577799888543322 22334456788888887766542    12567888898


Q ss_pred             CCCcEEEEEecCCceEEEEEcCCe--EEEEECC----eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           83 TTGTALRELNFLTSILAVRLNKKR--LVIVLRE----KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      .+++...-...+.......|+|++  ++..++.    .|+++|+.+++..+.... ...    ...++|++..+++....
T Consensus       265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~----~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN----NSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc----CceECCCCCEEEEEEcC
Confidence            877643322223223345687765  5555533    799999987765332211 111    12567888888877642


Q ss_pred             Cc-------cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCc--EEEEEEcC
Q 019349          157 TK-------GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT--IIRVFLVS  210 (342)
Q Consensus       157 ~~-------g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~--~irlwd~~  210 (342)
                      .+       ..|.+.|+.+++. ..+... .......|+|||++|+..+.++.  .+.+.++.
T Consensus       340 ~~~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~  400 (419)
T PRK04043        340 TNNEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN  400 (419)
T ss_pred             CCcccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence            11       3788889887764 334332 22335789999999887765432  23455653

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.52  E-value=1.4e-06  Score=83.51  Aligned_cols=195  Identities=17%  Similarity=0.187  Sum_probs=129.7

Q ss_pred             EEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecc
Q 019349          100 VRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAH  178 (342)
Q Consensus       100 i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h  178 (342)
                      +...++.++.+. .+.+..+|+++.+..+.......  ++..+..+  ++++.++.  +.|+|.+-|.++.+.++++.+|
T Consensus       143 ~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~--~v~imR~N--nr~lf~G~--t~G~V~LrD~~s~~~iht~~aH  216 (1118)
T KOG1275|consen  143 LHMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSAS--GVTIMRYN--NRNLFCGD--TRGTVFLRDPNSFETIHTFDAH  216 (1118)
T ss_pred             hccCCcceeecchhhheeeeecccceeeeeeeccCC--ceEEEEec--CcEEEeec--ccceEEeecCCcCceeeeeecc
Confidence            334666666666 77888999998877766544332  34455543  44665554  7899999999999999999999


Q ss_pred             cCCeeEEEECCCCCEEEEEeCCCc--------EEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc
Q 019349          179 QAPLAAIVLSSNGMYIATASEQGT--------IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS  250 (342)
Q Consensus       179 ~~~v~~i~~s~dg~~lat~s~dg~--------~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~  250 (342)
                      .+.|..+..  .|++|+|+|-.++        .++|||++..+.+..+.-...+   .-+.|+|.-.  ..++++|..|.
T Consensus       217 s~siSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P---~flrf~Psl~--t~~~V~S~sGq  289 (1118)
T KOG1275|consen  217 SGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP---QFLRFHPSLT--TRLAVTSQSGQ  289 (1118)
T ss_pred             ccceeeeec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc---hhhhhccccc--ceEEEEecccc
Confidence            999976655  6899999987543        3689999988766554322222   3467888754  38999999999


Q ss_pred             EEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCC
Q 019349          251 LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCC  325 (342)
Q Consensus       251 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~  325 (342)
                      .++-|..+-.++.-        +.       .+.+|.+.-..  .+.+.+.++.++.+-.+|.|..|. +.+.++
T Consensus       290 ~q~vd~~~lsNP~~--------~~-------~~v~p~~s~i~--~fDiSsn~~alafgd~~g~v~~wa-~~~~P~  346 (1118)
T KOG1275|consen  290 FQFVDTATLSNPPA--------GV-------KMVNPNGSGIS--AFDISSNGDALAFGDHEGHVNLWA-DRPQPQ  346 (1118)
T ss_pred             eeeccccccCCCcc--------ce-------eEEccCCCcce--eEEecCCCceEEEecccCcEeeec-CCCCCc
Confidence            99999544333220        00       01112111111  111133347899999999999998 444443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.48  E-value=6.2e-07  Score=53.09  Aligned_cols=39  Identities=26%  Similarity=0.399  Sum_probs=32.9

Q ss_pred             CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          212 ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      |+++..+..  +...|.+|+|+|++.   +|++++.|++|++||
T Consensus         1 g~~~~~~~~--h~~~i~~i~~~~~~~---~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRG--HSSSINSIAWSPDGN---FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEES--SSSSEEEEEEETTSS---EEEEEETTSEEEEEE
T ss_pred             CeEEEEEcC--CCCcEEEEEEecccc---cceeeCCCCEEEEEC
Confidence            355667754  356799999999998   999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.47  E-value=2.8e-05  Score=73.00  Aligned_cols=223  Identities=11%  Similarity=0.121  Sum_probs=135.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCc-----------------EEEEEeeCCEEEEEEcCCCCeEEEEcCC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGR-----------------LCYERAVGAFSIVEMLYSSSLLAIVGAG   67 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~g   67 (342)
                      ......|++|+....++|+|+.+|+ +|-.+.+..                 ...+.|.+.+..+.|.-..+.+-. +. 
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTt-SD-   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTT-SD-   90 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccc-cC-
Confidence            3456889999999999999999996 887654331                 112334455666666544444433 22 


Q ss_pred             CCCCCCCCeEEEEECCCCcEEEEEe---cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceee-EEeCCCCCceEEE
Q 019349           68 EQPSLSPRRLCLFNTTTGTALRELN---FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILD-TIDTVPNLKGLCA  140 (342)
Q Consensus        68 ~~~~~~d~~i~iwd~~~~~~~~~~~---~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~  140 (342)
                           .++-|.+|-+-+|....++.   ..+-|.+++|+-++  +.++. ||.|.+=.+...+.-. .++    ......
T Consensus        91 -----t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLk----g~~l~h  161 (1189)
T KOG2041|consen   91 -----TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELK----GQLLAH  161 (1189)
T ss_pred             -----CCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcc----hheccc
Confidence                 47899999998887654432   24568899997664  44444 7777665554322111 111    111223


Q ss_pred             EeeCCCccEEEEeCCCCccEEEEEEccCC-------ceeEEE----ecccCCeeEEEE--------CCCCCEEEEEeCCC
Q 019349          141 FSPSLNACFLAVPASTTKGSVLVYNVMEL-------HSHCEI----DAHQAPLAAIVL--------SSNGMYIATASEQG  201 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-------~~~~~~----~~h~~~v~~i~~--------s~dg~~lat~s~dg  201 (342)
                      +.+++|...+.+.-  .+|.+.++|.+..       .+..+.    ......|..+.|        -||-..||.+-+.|
T Consensus       162 v~ws~D~~~~Lf~~--ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nG  239 (1189)
T KOG2041|consen  162 VLWSEDLEQALFKK--ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANG  239 (1189)
T ss_pred             eeecccHHHHHhhh--cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCc
Confidence            45566665554443  5789999997532       121111    111222444554        35888999999999


Q ss_pred             cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC
Q 019349          202 TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS  248 (342)
Q Consensus       202 ~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d  248 (342)
                      ++ ++-.-.+......+..   +..+..+.|+++|.   .||+++.+
T Consensus       240 r~-QiMR~eND~~Pvv~dt---gm~~vgakWnh~G~---vLAvcG~~  279 (1189)
T KOG2041|consen  240 RM-QIMRSENDPEPVVVDT---GMKIVGAKWNHNGA---VLAVCGND  279 (1189)
T ss_pred             ee-hhhhhcCCCCCeEEec---ccEeecceecCCCc---EEEEccCc
Confidence            74 6655444433333332   24588899999999   99999876

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.47  E-value=0.00013  Score=61.61  Aligned_cols=199  Identities=11%  Similarity=0.139  Sum_probs=123.0

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEeCCCC------cEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349           13 VSFNQDNSGFALSTKDGFKIFDSSTG------RLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (342)
Q Consensus        13 l~fs~d~~~la~g~~~g~~v~d~~~~------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~   85 (342)
                      ++.++||+.||+-.+..+.+=.....      +.....+ ...-.-++|.+++..++++..       .++|+++|+.. 
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S-------~G~i~vfdl~g-   74 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAES-------TGTIRVFDLMG-   74 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcC-------CCeEEEEeccc-
Confidence            56788999998877766655543221      1111111 133456778888888888765       79999999865 


Q ss_pred             cEEEEEec--------CCceEEEEEcCC--------eEEEE-ECCeEEEEECC-----CCceeeEEeCCC-CCceEEEEe
Q 019349           86 TALRELNF--------LTSILAVRLNKK--------RLVIV-LREKTYIYDAN-----TLAILDTIDTVP-NLKGLCAFS  142 (342)
Q Consensus        86 ~~~~~~~~--------~~~v~~i~~~~~--------~~~~~-~d~~i~i~d~~-----~~~~~~~~~~~~-~~~~~~~~~  142 (342)
                      ..+..+..        ...|.++.|-+.        .+++. -.|.++-|-+.     ..+..+++.... .+.++.++.
T Consensus        75 ~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~v  154 (282)
T PF15492_consen   75 SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAV  154 (282)
T ss_pred             ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEE
Confidence            33333321        225566655221        33343 37777666543     224445554332 356888888


Q ss_pred             eCCCccEEEEeCCCCcc---------EEEEEEccCCcee-----------------------EE---E---ecccCCeeE
Q 019349          143 PSLNACFLAVPASTTKG---------SVLVYNVMELHSH-----------------------CE---I---DAHQAPLAA  184 (342)
Q Consensus       143 ~~~~~~~l~~~~~~~~g---------~i~iwd~~~~~~~-----------------------~~---~---~~h~~~v~~  184 (342)
                      .+|..++|..+|...+.         -+..|.+-++.+.                       ..   +   ......|..
T Consensus       155 y~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~k  234 (282)
T PF15492_consen  155 YHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFK  234 (282)
T ss_pred             EcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEE
Confidence            88887788877753222         2666765333210                       01   0   113467889


Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349          185 IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR  220 (342)
Q Consensus       185 i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~  220 (342)
                      |.+||||++||+...+|.+ -+|++.+-....++..
T Consensus       235 mSlSPdg~~La~ih~sG~l-sLW~iPsL~~~~~W~~  269 (282)
T PF15492_consen  235 MSLSPDGSLLACIHFSGSL-SLWEIPSLRLQRSWKQ  269 (282)
T ss_pred             EEECCCCCEEEEEEcCCeE-EEEecCcchhhcccch
Confidence            9999999999999999985 6999998877666643

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.46  E-value=5.3e-07  Score=77.36  Aligned_cols=143  Identities=7%  Similarity=0.103  Sum_probs=96.6

Q ss_pred             EEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC-----ceeEEEecccCCe
Q 019349          108 VIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-----HSHCEIDAHQAPL  182 (342)
Q Consensus       108 ~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-----~~~~~~~~h~~~v  182 (342)
                      .+..+..|-+-|++++- .+.+.+.   ..+.++.+...+.++.. |. .+|.|..+|++.+     .+...+ -|.+.|
T Consensus       229 s~G~sqqv~L~nvetg~-~qsf~sk---sDVfAlQf~~s~nLv~~-Gc-RngeI~~iDLR~rnqG~~~~a~rl-yh~Ssv  301 (425)
T KOG2695|consen  229 SVGLSQQVLLTNVETGH-QQSFQSK---SDVFALQFAGSDNLVFN-GC-RNGEIFVIDLRCRNQGNGWCAQRL-YHDSSV  301 (425)
T ss_pred             cccccceeEEEEeeccc-ccccccc---hhHHHHHhcccCCeeEe-cc-cCCcEEEEEeeecccCCCcceEEE-EcCcch
Confidence            34447788888888762 2233322   23555555543445544 44 6899999999865     233333 488999


Q ss_pred             eEEEECC-CCCEEEEEeCCCcEEEEEEcCCCee---EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          183 AAIVLSS-NGMYIATASEQGTIIRVFLVSEATK---SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       183 ~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~---~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      +++..-. ++++|.+.+-+|+ |++||.+.-+.   +..+..|.....-.-+-..+.+.   .++++++|-..+||.++.
T Consensus       302 tslq~Lq~s~q~LmaS~M~gk-ikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg---~I~s~GdDcytRiWsl~~  377 (425)
T KOG2695|consen  302 TSLQILQFSQQKLMASDMTGK-IKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEG---SIFSVGDDCYTRIWSLDS  377 (425)
T ss_pred             hhhhhhccccceEeeccCcCc-eeEeeehhhhcccceeeeecccccccccccccccccc---eEEEccCeeEEEEEeccc
Confidence            9998877 8899999999998 69999987665   66665443322222233456666   899999999999999986


Q ss_pred             CCC
Q 019349          259 AIN  261 (342)
Q Consensus       259 ~~~  261 (342)
                      +..
T Consensus       378 ghL  380 (425)
T KOG2695|consen  378 GHL  380 (425)
T ss_pred             Cce
Confidence            653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.45  E-value=2.7e-05  Score=65.71  Aligned_cols=179  Identities=13%  Similarity=0.119  Sum_probs=108.6

Q ss_pred             CCeEEEEECCCCcEEEEEecCC----c---eEEEEEc--CCeEEEEE-CCeEEEEECCCCceee--EEeCCCCCceEEEE
Q 019349           74 PRRLCLFNTTTGTALRELNFLT----S---ILAVRLN--KKRLVIVL-REKTYIYDANTLAILD--TIDTVPNLKGLCAF  141 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~----~---v~~i~~~--~~~~~~~~-d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~  141 (342)
                      .+.|.++...-......++.-+    .   ..++.++  ...+++.. ++.+.+-+...+.+..  +++.|.-+  ....
T Consensus        94 ~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E--~Wta  171 (339)
T KOG0280|consen   94 RGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE--AWTA  171 (339)
T ss_pred             cceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeeccccccccee--eeee
Confidence            5677777654333222222110    1   2334443  33444433 5667655544443332  44443332  3333


Q ss_pred             eeCCCccEEEEeCCCCccEEEEEEccC-CceeEE-EecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCC-CeeEEE
Q 019349          142 SPSLNACFLAVPASTTKGSVLVYNVME-LHSHCE-IDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSE-ATKSYS  217 (342)
Q Consensus       142 ~~~~~~~~l~~~~~~~~g~i~iwd~~~-~~~~~~-~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~-~~~~~~  217 (342)
                      .++.....+++.|+ .|+.+..||++. ++.+.. .+-|...|.+|.-+| .+.+|+||+-|.. |++||.++ ++.+..
T Consensus       172 ~f~~~~pnlvytGg-DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~-i~~~DtRnm~kPl~~  249 (339)
T KOG0280|consen  172 KFSDKEPNLVYTGG-DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDEC-IRVLDTRNMGKPLFK  249 (339)
T ss_pred             ecccCCCceEEecC-CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccc-eeeeehhcccCcccc
Confidence            33333334555555 699999999993 334433 567999999998886 6889999999986 69999995 555543


Q ss_pred             eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      -.   ..+.|+.+..+|.-.  +.|++++.-+-.+|-+++....
T Consensus       250 ~~---v~GGVWRi~~~p~~~--~~lL~~CMh~G~ki~~~~~~~~  288 (339)
T KOG0280|consen  250 AK---VGGGVWRIKHHPEIF--HRLLAACMHNGAKILDSSDKVL  288 (339)
T ss_pred             Cc---cccceEEEEecchhh--hHHHHHHHhcCceEEEeccccc
Confidence            22   235599999998754  3567777777788888876654

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.45  E-value=8.5e-07  Score=80.51  Aligned_cols=231  Identities=12%  Similarity=0.143  Sum_probs=140.1

Q ss_pred             CCCCCeEEE-EEcCCCCEEEEEcCCcEEEEeCCCC---------cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349            5 SSSYPVFFV-SFNQDNSGFALSTKDGFKIFDSSTG---------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         5 ~~~~~V~~l-~fs~d~~~la~g~~~g~~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (342)
                      .+...|+.+ +.+..+.++.++.++++++|.+.+-         +..|..|..++..+.++.+-..++.+         |
T Consensus       733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc---------D  803 (1034)
T KOG4190|consen  733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC---------D  803 (1034)
T ss_pred             CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec---------c
Confidence            445556655 3444555555556667899987542         23455555666666666555555433         7


Q ss_pred             CeEEEEECCCCcEEEEEec---CC---ceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCC--CCC-ceEEEEe
Q 019349           75 RRLCLFNTTTGTALRELNF---LT---SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTV--PNL-KGLCAFS  142 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~---~~---~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~--~~~-~~~~~~~  142 (342)
                      +.|++||.-.++.+..+.-   .+   .|.++.--...++++.   ..+++++|-+...-..+++..  +.+ ...-+++
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia  883 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA  883 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence            7999999888877654421   22   3444332223344443   679999999988766666544  222 2334555


Q ss_pred             eCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE-EEcCCCeeEEEeccC
Q 019349          143 PSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV-FLVSEATKSYSFRRG  221 (342)
Q Consensus       143 ~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl-wd~~~~~~~~~~~~~  221 (342)
                      ..+.+..+|.+-  .+|+|.+.|.++|+.+..+..-+-....++ .|..+.|+....|.++ -+ |..-+|......+..
T Consensus       884 Va~~GN~lAa~L--SnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHsl-aVnWhaldgimh~q~kpp  959 (1034)
T KOG4190|consen  884 VADKGNKLAAAL--SNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSL-AVNWHALDGIMHLQDKPP  959 (1034)
T ss_pred             eccCcchhhHHh--cCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhccccee-EeeehhcCCeeeeccCCC
Confidence            556667888776  479999999999998766654333333333 3666778887778775 46 988777665555433


Q ss_pred             cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          222 TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      ..+++.    +-.-|.   -|+++...+.+.||.
T Consensus       960 pepahf----lqsvgp---SLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  960 PEPAHF----LQSVGP---SLVTAQNGNILGVYA  986 (1034)
T ss_pred             Ccchhh----hhccCc---eeEEeccCcEEEEEe
Confidence            223221    011233   466666666777774

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=1.5e-06  Score=74.69  Aligned_cols=150  Identities=11%  Similarity=0.101  Sum_probs=104.0

Q ss_pred             CCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC-----cEEEEEec
Q 019349           19 NSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-----TALRELNF   93 (342)
Q Consensus        19 ~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~-----~~~~~~~~   93 (342)
                      |-.+++|.+.++-+-|+++|-...-.....+-...++... .+++.|.      ..+.|...|++.+     .+...+-+
T Consensus       225 gyhfs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~-nLv~~Gc------RngeI~~iDLR~rnqG~~~~a~rlyh  297 (425)
T KOG2695|consen  225 GYHFSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSD-NLVFNGC------RNGEIFVIDLRCRNQGNGWCAQRLYH  297 (425)
T ss_pred             eeeecccccceeEEEEeecccccccccchhHHHHHhcccC-CeeEecc------cCCcEEEEEeeecccCCCcceEEEEc
Confidence            3446677777788888887744332233344333443333 3445554      5789999999753     56777788


Q ss_pred             CCceEEEEE---cCCeEEEEE-CCeEEEEECCCCce---eeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEc
Q 019349           94 LTSILAVRL---NKKRLVIVL-REKTYIYDANTLAI---LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV  166 (342)
Q Consensus        94 ~~~v~~i~~---~~~~~~~~~-d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~  166 (342)
                      ++.|+++..   +...+++.. +++|++||++--++   +.+++.|.+...-.-+..++.+..++++|  +|-..+||.+
T Consensus       298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~G--dDcytRiWsl  375 (425)
T KOG2695|consen  298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVG--DDCYTRIWSL  375 (425)
T ss_pred             CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEcc--CeeEEEEEec
Confidence            888887654   455555544 89999999986665   88888887765555555566666777777  6999999999


Q ss_pred             cCCceeEEEec
Q 019349          167 MELHSHCEIDA  177 (342)
Q Consensus       167 ~~~~~~~~~~~  177 (342)
                      +.+..+.+++.
T Consensus       376 ~~ghLl~tipf  386 (425)
T KOG2695|consen  376 DSGHLLCTIPF  386 (425)
T ss_pred             ccCceeeccCC
Confidence            99998888764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.43  E-value=0.0008  Score=62.41  Aligned_cols=194  Identities=11%  Similarity=0.059  Sum_probs=116.0

Q ss_pred             EEEEEEcCCCCe-EEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE----CCeEEEEECC
Q 019349           49 FSIVEMLYSSSL-LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL----REKTYIYDAN  121 (342)
Q Consensus        49 ~~~~~~~~~~~~-~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~----d~~i~i~d~~  121 (342)
                      ...-.+.++++. +++.+...    ....|.++|+.+++...-...+.......|+|+.  +++..    +..|+++|+.
T Consensus       190 ~~~p~wSpDG~~~i~y~s~~~----~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~  265 (419)
T PRK04043        190 NIFPKWANKEQTAFYYTSYGE----RKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTN  265 (419)
T ss_pred             eEeEEECCCCCcEEEEEEccC----CCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECC
Confidence            334567777774 55554321    1357999999988765554555556667788875  44333    2479999998


Q ss_pred             CCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC-CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349          122 TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ  200 (342)
Q Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d  200 (342)
                      +++.. .+.....  ......++||+..|++.+.. ....|.++|+.+++..+.... ...  ...|||||++|+..+..
T Consensus       266 ~g~~~-~LT~~~~--~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~--~~~~SPDG~~Ia~~~~~  339 (419)
T PRK04043        266 TKTLT-QITNYPG--IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN--NSSVSTYKNYIVYSSRE  339 (419)
T ss_pred             CCcEE-EcccCCC--ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc--CceECCCCCEEEEEEcC
Confidence            77533 3322221  12233567788777766531 123688888887765332221 111  24899999999887754


Q ss_pred             C--------cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC-Cc--EEEEecCCC
Q 019349          201 G--------TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-GS--LHVFSPGFA  259 (342)
Q Consensus       201 g--------~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d-g~--i~vwd~~~~  259 (342)
                      .        .-|.+.|+.+++. ..+..+.   .....+|+|||+   +|+..+.+ +.  +.+.+++..
T Consensus       340 ~~~~~~~~~~~I~v~d~~~g~~-~~LT~~~---~~~~p~~SPDG~---~I~f~~~~~~~~~L~~~~l~g~  402 (419)
T PRK04043        340 TNNEFGKNTFNLYLISTNSDYI-RRLTANG---VNQFPRFSSDGG---SIMFIKYLGNQSALGIIRLNYN  402 (419)
T ss_pred             CCcccCCCCcEEEEEECCCCCe-EECCCCC---CcCCeEECCCCC---EEEEEEccCCcEEEEEEecCCC
Confidence            2        2346778877754 3343221   123578999998   77666543 33  556666543

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=2.2e-07  Score=88.51  Aligned_cols=207  Identities=15%  Similarity=0.150  Sum_probs=135.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .++..-+|++|+-+.++|++|+-.| +++|++.+|...-..  |...+..+....+++.+++.+.-     +.--..+|+
T Consensus      1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~-----S~PlsaLW~ 1173 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSS-----SSPLSALWD 1173 (1516)
T ss_pred             ccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccc-----cCchHHHhc
Confidence            4567789999999999999998877 799999999765443  44455556666666777776653     222567999


Q ss_pred             CCC-CcEEEEEecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCC--CCceEEEEeeCCCccEEEEeCC
Q 019349           82 TTT-GTALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVP--NLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        82 ~~~-~~~~~~~~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      +.. +...+++..   -.++.|++..  .++.+ .+...+||+++...+.++-+..  +...-.+.+++|+..++.    
T Consensus      1174 ~~s~~~~~Hsf~e---d~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---- 1246 (1516)
T KOG1832|consen 1174 ASSTGGPRHSFDE---DKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---- 1246 (1516)
T ss_pred             cccccCccccccc---cceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe----
Confidence            853 445555543   3456665542  23333 5688999999987666632211  111123445566665654    


Q ss_pred             CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC
Q 019349          156 TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  235 (342)
Q Consensus       156 ~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d  235 (342)
                       .||  .+||++..+.++.|......+.. .|+|.|+.++..+      .|||+++-+.++..+. -   .-..+.|+..
T Consensus      1247 -ndG--vLWDvR~~~aIh~FD~ft~~~~G-~FHP~g~eVIINS------EIwD~RTF~lLh~VP~-L---dqc~VtFNst 1312 (1516)
T KOG1832|consen 1247 -NDG--VLWDVRIPEAIHRFDQFTDYGGG-GFHPSGNEVIINS------EIWDMRTFKLLHSVPS-L---DQCAVTFNST 1312 (1516)
T ss_pred             -eCc--eeeeeccHHHHhhhhhheecccc-cccCCCceEEeec------hhhhhHHHHHHhcCcc-c---cceEEEeccC
Confidence             344  47999988877766544432222 3999999999864      3799999887765531 1   1345789888


Q ss_pred             CC
Q 019349          236 MQ  237 (342)
Q Consensus       236 ~~  237 (342)
                      |.
T Consensus      1313 G~ 1314 (1516)
T KOG1832|consen 1313 GD 1314 (1516)
T ss_pred             cc
Confidence            86

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.41  E-value=1.6e-05  Score=68.50  Aligned_cols=187  Identities=13%  Similarity=0.101  Sum_probs=123.0

Q ss_pred             eEEEEE-CCeEEEEECC-CCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc----CCceeEEEeccc
Q 019349          106 RLVIVL-REKTYIYDAN-TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM----ELHSHCEIDAHQ  179 (342)
Q Consensus       106 ~~~~~~-d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~----~~~~~~~~~~h~  179 (342)
                      +++.++ |.+++||--. .++.-..+ .+..|....+++..++...|.++-  .+|++.-+-+.    .....+...+|.
T Consensus        38 gv~~~s~drtvrv~lkrds~q~wpsI-~~~mP~~~~~~~y~~e~~~L~vg~--~ngtvtefs~sedfnkm~~~r~~~~h~  114 (404)
T KOG1409|consen   38 GVISVSEDRTVRVWLKRDSGQYWPSI-YHYMPSPCSAMEYVSESRRLYVGQ--DNGTVTEFALSEDFNKMTFLKDYLAHQ  114 (404)
T ss_pred             CeEEccccceeeeEEeccccccCchh-hhhCCCCceEeeeeccceEEEEEE--ecceEEEEEhhhhhhhcchhhhhhhhh
Confidence            444444 7799999554 34333333 345677788888888777776654  57888888653    334556677899


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCcEEEEEEc-CCCe-----------------------------------------eEEE
Q 019349          180 APLAAIVLSSNGMYIATASEQGTIIRVFLV-SEAT-----------------------------------------KSYS  217 (342)
Q Consensus       180 ~~v~~i~~s~dg~~lat~s~dg~~irlwd~-~~~~-----------------------------------------~~~~  217 (342)
                      .+|..+.|+-.-+.+++.+.|.. + .|.. +.+.                                         .+.+
T Consensus       115 ~~v~~~if~~~~e~V~s~~~dk~-~-~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~  192 (404)
T KOG1409|consen  115 ARVSAIVFSLTHEWVLSTGKDKQ-F-AWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITT  192 (404)
T ss_pred             cceeeEEecCCceeEEEeccccc-e-EEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEE
Confidence            99999999988899999988854 3 3432 1111                                         1222


Q ss_pred             eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccC
Q 019349          218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFP  297 (342)
Q Consensus       218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (342)
                      +..  +...+.+++|.|...   +|.++..|..|-+||+...+...       +......+.+..+|...-         
T Consensus       193 ~~~--h~~~~~~l~Wd~~~~---~LfSg~~d~~vi~wdigg~~g~~-------~el~gh~~kV~~l~~~~~---------  251 (404)
T KOG1409|consen  193 FNG--HTGEVTCLKWDPGQR---LLFSGASDHSVIMWDIGGRKGTA-------YELQGHNDKVQALSYAQH---------  251 (404)
T ss_pred             EcC--cccceEEEEEcCCCc---EEEeccccCceEEEeccCCccee-------eeeccchhhhhhhhhhhh---------
Confidence            221  234589999999988   99999999999999997554211       000111122233333321         


Q ss_pred             CCccccEEEEEEeCCcEEEEEEecC
Q 019349          298 AGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       298 ~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                          -.+++++++||.|..|+++-.
T Consensus       252 ----t~~l~S~~edg~i~~w~mn~~  272 (404)
T KOG1409|consen  252 ----TRQLISCGEDGGIVVWNMNVK  272 (404)
T ss_pred             ----heeeeeccCCCeEEEEeccce
Confidence                167999999999999998743

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.40  E-value=2e-05  Score=72.65  Aligned_cols=75  Identities=13%  Similarity=0.191  Sum_probs=61.6

Q ss_pred             cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349          177 AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       177 ~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      ...+.|.|++++|+...|+.|+.||++ .+||...+.....  ..  .-..+.++|+|+|.   ++++|++.|.+.+||+
T Consensus       257 pL~s~v~~ca~sp~E~kLvlGC~DgSi-iLyD~~~~~t~~~--ka--~~~P~~iaWHp~ga---i~~V~s~qGelQ~FD~  328 (545)
T PF11768_consen  257 PLPSQVICCARSPSEDKLVLGCEDGSI-ILYDTTRGVTLLA--KA--EFIPTLIAWHPDGA---IFVVGSEQGELQCFDM  328 (545)
T ss_pred             ecCCcceEEecCcccceEEEEecCCeE-EEEEcCCCeeeee--ee--cccceEEEEcCCCc---EEEEEcCCceEEEEEe
Confidence            467889999999999999999999996 5999987643322  11  22367899999999   9999999999999998


Q ss_pred             CCC
Q 019349          257 GFA  259 (342)
Q Consensus       257 ~~~  259 (342)
                      .-.
T Consensus       329 ALs  331 (545)
T PF11768_consen  329 ALS  331 (545)
T ss_pred             ecC
Confidence            653

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=98.37  E-value=1.9e-06  Score=80.54  Aligned_cols=122  Identities=16%  Similarity=0.165  Sum_probs=98.2

Q ss_pred             CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc---------------eeEEEecccCCeeEEEECCCCCEEEEE
Q 019349          133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH---------------SHCEIDAHQAPLAAIVLSSNGMYIATA  197 (342)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~---------------~~~~~~~h~~~v~~i~~s~dg~~lat~  197 (342)
                      ++...+-+++++.+..++|++|  .||-+++..+.+..               .-+++.+|...|.-+.|+.+.+.|-|.
T Consensus        12 PnnvkL~c~~WNke~gyIAcgG--~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtS   89 (1189)
T KOG2041|consen   12 PNNVKLHCAEWNKESGYIACGG--ADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTS   89 (1189)
T ss_pred             CCCceEEEEEEcccCCeEEecc--ccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccccccc
Confidence            3445677888988888999998  69999998775321               124678999999999999999999999


Q ss_pred             eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          198 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       198 s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      ..+|-+ -+|-+-.|.-..++......+.|.+|+|+.||.   .++...+||.|-|=.++.+.
T Consensus        90 Dt~GlI-iVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~---kIcIvYeDGavIVGsvdGNR  148 (1189)
T KOG2041|consen   90 DTSGLI-IVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT---KICIVYEDGAVIVGSVDGNR  148 (1189)
T ss_pred             CCCceE-EEEeeecccHHHHHhhCcCccEEEEEEEcCCCc---EEEEEEccCCEEEEeeccce
Confidence            999965 599999887655554444456699999999999   99999999999888777543

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.35  E-value=0.00069  Score=64.31  Aligned_cols=191  Identities=16%  Similarity=0.133  Sum_probs=106.0

Q ss_pred             EEEEEcCCc-EEEEeCCCCcEEEEEeeCCE------EEEE--EcCCC-CeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349           21 GFALSTKDG-FKIFDSSTGRLCYERAVGAF------SIVE--MLYSS-SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (342)
Q Consensus        21 ~la~g~~~g-~~v~d~~~~~~~~~~~~~~~------~~~~--~~~~~-~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~   90 (342)
                      .+.+++.++ +.-.|..+++++.......-      ..+.  ..... +.+. ++.      .++.|.-+|.++|+.+..
T Consensus        63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~-v~~------~~g~v~AlD~~TG~~~W~  135 (488)
T cd00216          63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVF-FGT------FDGRLVALDAETGKQVWK  135 (488)
T ss_pred             EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEE-Eec------CCCeEEEEECCCCCEeee
Confidence            455555444 57778888887755432111      0000  00111 3333 333      378999999999999988


Q ss_pred             EecCCc------eE-EEEEcCCeEEEEE----------CCeEEEEECCCCceeeEEeCCCCCc-e---------------
Q 019349           91 LNFLTS------IL-AVRLNKKRLVIVL----------REKTYIYDANTLAILDTIDTVPNLK-G---------------  137 (342)
Q Consensus        91 ~~~~~~------v~-~i~~~~~~~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~-~---------------  137 (342)
                      ......      +. +..+..+.+++..          ++.++.+|..+++.+..++...... .               
T Consensus       136 ~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g  215 (488)
T cd00216         136 FGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG  215 (488)
T ss_pred             ecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence            876543      21 2233344444433          3578899999999888776532110 0               


Q ss_pred             --E-EEEeeCCCccEEEEeCCC----------------CccEEEEEEccCCceeEEEec--ccC----CeeEEEE----C
Q 019349          138 --L-CAFSPSLNACFLAVPAST----------------TKGSVLVYNVMELHSHCEIDA--HQA----PLAAIVL----S  188 (342)
Q Consensus       138 --~-~~~~~~~~~~~l~~~~~~----------------~~g~i~iwd~~~~~~~~~~~~--h~~----~v~~i~~----s  188 (342)
                        + ...+.++.+..++++..+                .++.|.-+|..+++.+-.++.  |..    ......+    .
T Consensus       216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~  295 (488)
T cd00216         216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP  295 (488)
T ss_pred             CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence              0 011122222234333310                123799999999998765532  211    0000011    1


Q ss_pred             CCCC---EEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349          189 SNGM---YIATASEQGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       189 ~dg~---~lat~s~dg~~irlwd~~~~~~~~~~~  219 (342)
                      -+|.   .++.++.+|.+ ...|.++|+.+.+..
T Consensus       296 ~~g~~~~~V~~g~~~G~l-~ald~~tG~~~W~~~  328 (488)
T cd00216         296 KDGKPVPAIVHAPKNGFF-YVLDRTTGKLISARP  328 (488)
T ss_pred             cCCCeeEEEEEECCCceE-EEEECCCCcEeeEeE
Confidence            2343   57778888985 699999999887764

The alignment model contains an 8-bladed beta-propeller.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.33  E-value=0.00041  Score=69.12  Aligned_cols=275  Identities=15%  Similarity=0.137  Sum_probs=155.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE-EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      +..|.++.|-.+...++.+...| +.+-|.++..+... ....+|...+|.++...++++++       .+++.+ ...+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~-------~~tll~-mT~~  139 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITG-------RQTLLF-MTKD  139 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeC-------CcEEEE-Eecc
Confidence            36899999999999998888877 56668888755433 33478999999999999999987       345443 3333


Q ss_pred             CcEEEEEec------CCceEEEEEcCCeEEE-EECCeEEEEECCC-CceeeEEeCCCCCceEEEEeeCCCccEEEEeC--
Q 019349           85 GTALRELNF------LTSILAVRLNKKRLVI-VLREKTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPA--  154 (342)
Q Consensus        85 ~~~~~~~~~------~~~v~~i~~~~~~~~~-~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--  154 (342)
                      -.++.+...      .+....+-|.+..... ...++..-.+... .+....++.+   ..-..+++-+|+.++|+..  
T Consensus       140 f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~---~~~~~IsWRgDg~~fAVs~~~  216 (1265)
T KOG1920|consen  140 FEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQD---DHKTSISWRGDGEYFAVSFVE  216 (1265)
T ss_pred             ccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhc---cCCceEEEccCCcEEEEEEEe
Confidence            333332221      1223334443322111 1122211111110 0111111111   1234578888888888732  


Q ss_pred             CCCc-cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe---CCCcEEEEEEcCCCeeEEEecc--CcCceeEE
Q 019349          155 STTK-GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS---EQGTIIRVFLVSEATKSYSFRR--GTYPSTIF  228 (342)
Q Consensus       155 ~~~~-g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s---~dg~~irlwd~~~~~~~~~~~~--~~~~~~v~  228 (342)
                      ...+ ..|++||.+ +..-.+-..-...=.+++|-|.|.++|+-.   .|++ |.+|- ++|-.-.+|..  .....++.
T Consensus       217 ~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~-IvffE-rNGL~hg~f~l~~p~de~~ve  293 (1265)
T KOG1920|consen  217 SETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSD-IVFFE-RNGLRHGEFVLPFPLDEKEVE  293 (1265)
T ss_pred             ccCCceeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCc-EEEEe-cCCccccccccCCcccccchh
Confidence            1123 789999976 432221112223346789999999999863   3445 43665 45644333321  12233489


Q ss_pred             EEEEecCCCcccEEEE---EeCCCcEEEEecCCCCCCCCCCCccccccc--cccccccccccccccceeeeccCCCcccc
Q 019349          229 SLSFGQSMQFQDILVA---TSSSGSLHVFSPGFAINQRRGGRTSSILGS--ILPESVNEVLDPADHHVLRNAFPAGVKRA  303 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~---~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  303 (342)
                      .++|+.++.   .||+   ......|++|-+..-.         .++..  ..|.....+|+|...             .
T Consensus       294 ~L~Wns~sd---iLAv~~~~~e~~~v~lwt~~Nyh---------WYLKq~l~~~~~~~~~W~p~~~-------------~  348 (1265)
T KOG1920|consen  294 ELAWNSNSD---ILAVVTSNLENSLVQLWTTGNYH---------WYLKQELQFSQKALLMWDPVTE-------------K  348 (1265)
T ss_pred             eeeecCCCC---ceeeeecccccceEEEEEecCeE---------EEEEEEEeccccccccccCCCc-------------e
Confidence            999999998   8888   4444459999865421         11211  122333368888542             4


Q ss_pred             EEEEEEeCCcEEEEEEe
Q 019349          304 SVSVITYNGYFVEYIFS  320 (342)
Q Consensus       304 ~l~~~~~dg~v~~~~~~  320 (342)
                      +|.+-+.+|.+.++++-
T Consensus       349 ~L~v~~~sG~~~v~~~~  365 (1265)
T KOG1920|consen  349 TLHVLRESGQRLVRDFA  365 (1265)
T ss_pred             eEEEEecCCcEEEEEEE
Confidence            56666677776666654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.31  E-value=0.00057  Score=60.10  Aligned_cols=222  Identities=17%  Similarity=0.175  Sum_probs=122.8

Q ss_pred             cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcC----CCCCCCCCCeEEEEECCCCcEEEEEecCCceEE-----
Q 019349           29 GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGA----GEQPSLSPRRLCLFNTTTGTALRELNFLTSILA-----   99 (342)
Q Consensus        29 g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~-----   99 (342)
                      .+.|+|.++++++-....+-...+.+.++.+.+.++..    +..+ -..-.|.+||.++-....++..+..-+.     
T Consensus        18 rv~viD~d~~k~lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG-~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~   96 (342)
T PF06433_consen   18 RVYVIDADSGKLLGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRG-ERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPY   96 (342)
T ss_dssp             EEEEEETTTTEEEEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEE-EEEEEEEEEETTTTEEEEEEEETTS-B--BS--
T ss_pred             eEEEEECCCCcEEEEeecccCCceeECCCCCEEEEEEEEEeccccc-cceeEEEEEecCcCcccceEecCCcchheeccc
Confidence            46788999988776655555555556677776654432    1000 0123489999999999998887753111     


Q ss_pred             ---EEEcCC--eEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc-CCc
Q 019349          100 ---VRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM-ELH  170 (342)
Q Consensus       100 ---i~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~-~~~  170 (342)
                         +.++.+  .+++..   ...|-|-|+...+.+.++.++    ++..+-|.++..+...|+   ||.+.-..+. .|+
T Consensus        97 ~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~P----GC~~iyP~~~~~F~~lC~---DGsl~~v~Ld~~Gk  169 (342)
T PF06433_consen   97 KNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTP----GCWLIYPSGNRGFSMLCG---DGSLLTVTLDADGK  169 (342)
T ss_dssp             GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGT----SEEEEEEEETTEEEEEET---TSCEEEEEETSTSS
T ss_pred             ccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCC----CEEEEEecCCCceEEEec---CCceEEEEECCCCC
Confidence               223222  222222   346666677777777777653    233344445444555554   6777766664 333


Q ss_pred             eeEEE--------------------------ecccCCeeE---------------------------------EEECCCC
Q 019349          171 SHCEI--------------------------DAHQAPLAA---------------------------------IVLSSNG  191 (342)
Q Consensus       171 ~~~~~--------------------------~~h~~~v~~---------------------------------i~~s~dg  191 (342)
                      .....                          ....+.|..                                 +++++..
T Consensus       170 ~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~  249 (342)
T PF06433_consen  170 EAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAAS  249 (342)
T ss_dssp             EEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTT
T ss_pred             EeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecccc
Confidence            22111                          111122333                                 3333322


Q ss_pred             CEEEEE---eCC------CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCCCCC
Q 019349          192 MYIATA---SEQ------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAIN  261 (342)
Q Consensus       192 ~~lat~---s~d------g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~~  261 (342)
                      +.|..-   +.+      |+-|=++|+.+++.+.++..   ..++.+|+.+.|.+  ++|.+.+ .++.+.|||..+++.
T Consensus       250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l---~~~~~Si~Vsqd~~--P~L~~~~~~~~~l~v~D~~tGk~  324 (342)
T PF06433_consen  250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL---EHPIDSIAVSQDDK--PLLYALSAGDGTLDVYDAATGKL  324 (342)
T ss_dssp             TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE---EEEESEEEEESSSS---EEEEEETTTTEEEEEETTT--E
T ss_pred             CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC---CCccceEEEccCCC--cEEEEEcCCCCeEEEEeCcCCcE
Confidence            222221   011      22234668888888888753   23577999999887  5776654 579999999998876


Q ss_pred             CC
Q 019349          262 QR  263 (342)
Q Consensus       262 ~~  263 (342)
                      .+
T Consensus       325 ~~  326 (342)
T PF06433_consen  325 VR  326 (342)
T ss_dssp             EE
T ss_pred             Ee
Confidence            44

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.30  E-value=0.0019  Score=56.12  Aligned_cols=231  Identities=13%  Similarity=0.085  Sum_probs=134.0

Q ss_pred             CCCeEEEEEcC-CCCEEEEEcCCc--EEEEeCCCCcEEEEEee---CC-EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            7 SYPVFFVSFNQ-DNSGFALSTKDG--FKIFDSSTGRLCYERAV---GA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         7 ~~~V~~l~fs~-d~~~la~g~~~g--~~v~d~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      +...-.++.+| +...++.+---|  +.+||+.+++.......   .. .....+..+++.+.+.-....  ...+.|-|
T Consensus         4 P~RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~--~g~G~IgV   81 (305)
T PF07433_consen    4 PARGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYE--TGRGVIGV   81 (305)
T ss_pred             CccccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccC--CCcEEEEE
Confidence            34556788999 555567777666  48999999977654322   11 223456667777766544321  24688999


Q ss_pred             EECC-CCcEEEEEecCC-ceEEEEEcCCe--EEEEE-------------------CCeEEEEECCCCceeeEEeCCC--C
Q 019349           80 FNTT-TGTALRELNFLT-SILAVRLNKKR--LVIVL-------------------REKTYIYDANTLAILDTIDTVP--N  134 (342)
Q Consensus        80 wd~~-~~~~~~~~~~~~-~v~~i~~~~~~--~~~~~-------------------d~~i~i~d~~~~~~~~~~~~~~--~  134 (342)
                      ||.. +-+.+.++...+ ....+.+.++.  ++++.                   +-.+-+.|..+++++.+.....  +
T Consensus        82 yd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~  161 (305)
T PF07433_consen   82 YDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH  161 (305)
T ss_pred             EECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence            9998 556666765433 34455566665  44443                   1234455666777776654422  3


Q ss_pred             CceEEEEeeCCCccEEEEeCCC---C--ccEEEEEEccCCceeEEEe-------cccCCeeEEEECCCCCEEEEEeCCCc
Q 019349          135 LKGLCAFSPSLNACFLAVPAST---T--KGSVLVYNVMELHSHCEID-------AHQAPLAAIVLSSNGMYIATASEQGT  202 (342)
Q Consensus       135 ~~~~~~~~~~~~~~~l~~~~~~---~--~g~i~iwd~~~~~~~~~~~-------~h~~~v~~i~~s~dg~~lat~s~dg~  202 (342)
                      ...+--++.++++..++..-..   .  ---|-+++.  ++.+..+.       .-.+-+-+|+++++|.+++..|-.|.
T Consensus       162 ~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg  239 (305)
T PF07433_consen  162 QLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGG  239 (305)
T ss_pred             ccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCC
Confidence            2334444444444333322100   0  011222221  22122221       22356889999999999999998888


Q ss_pred             EEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc
Q 019349          203 IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS  250 (342)
Q Consensus       203 ~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~  250 (342)
                      .+.+||..+|+.+.....    ..+..++-.+++    ++++.+. |.
T Consensus       240 ~~~~~d~~tg~~~~~~~l----~D~cGva~~~~~----f~~ssG~-G~  278 (305)
T PF07433_consen  240 RVAVWDAATGRLLGSVPL----PDACGVAPTDDG----FLVSSGQ-GQ  278 (305)
T ss_pred             EEEEEECCCCCEeecccc----CceeeeeecCCc----eEEeCCC-cc
Confidence            889999999998766532    236667766554    5555444 44

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.26  E-value=1.2e-05  Score=71.57  Aligned_cols=185  Identities=10%  Similarity=0.101  Sum_probs=126.3

Q ss_pred             CCCeEEEEECCCCcEEEEEe----cCCceEEEEEcCCeEEEEE----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349           73 SPRRLCLFNTTTGTALRELN----FLTSILAVRLNKKRLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS  144 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~----~~~~v~~i~~~~~~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  144 (342)
                      -|+.++.|.-..-.-+.-+.    +...|.+++.+-++...++    |..+++||+++..++.-++...-|..+..+...
T Consensus        28 lDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~sk  107 (558)
T KOG0882|consen   28 LDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSK  107 (558)
T ss_pred             cchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCC
Confidence            38899999754322222222    2336677777777766666    679999999887666555554455555555444


Q ss_pred             CCc-cEEEEeCCCCccEEEEEEccCCc-ee-EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC------CeeE
Q 019349          145 LNA-CFLAVPASTTKGSVLVYNVMELH-SH-CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE------ATKS  215 (342)
Q Consensus       145 ~~~-~~l~~~~~~~~g~i~iwd~~~~~-~~-~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~------~~~~  215 (342)
                      ++. ..+|.... .+|.|.++|-.... +. ..-+-|.+||.++.+++-+..+++....|. |.-|....      .+..
T Consensus       108 Gd~~s~IAVs~~-~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gm-VEyWs~e~~~qfPr~~l~  185 (558)
T KOG0882|consen  108 GDKISLIAVSLF-KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGM-VEYWSAEGPFQFPRTNLN  185 (558)
T ss_pred             CCeeeeEEeecc-cCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccce-eEeecCCCcccCcccccc
Confidence            433 35555555 68999999975443 33 333569999999999999999999888885 68998862      1111


Q ss_pred             EEeccC-------cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349          216 YSFRRG-------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       216 ~~~~~~-------~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~  262 (342)
                      .+++..       .......++.|+|++.   .+++-+.|..|++++.++++..
T Consensus       186 ~~~K~eTdLy~f~K~Kt~pts~Efsp~g~---qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  186 FELKHETDLYGFPKAKTEPTSFEFSPDGA---QISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             ccccccchhhcccccccCccceEEccccC---cccccCcccEEEEEEeccchhh
Confidence            111100       0123478899999999   9999999999999999987643

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.25  E-value=1.6e-05  Score=69.60  Aligned_cols=80  Identities=14%  Similarity=0.128  Sum_probs=64.1

Q ss_pred             ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee
Q 019349          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK  214 (342)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~  214 (342)
                      .-+..++.+||..+++++.  .|+.|+|-.....-.+..+ -+|+.-|..|++-++ ..|++||.|++ +|+||+.+|+.
T Consensus       152 Sml~dVavS~D~~~IitaD--RDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~t-lr~Wd~~sgk~  227 (390)
T KOG3914|consen  152 SMLLDVAVSPDDQFIITAD--RDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKT-LRLWDITSGKL  227 (390)
T ss_pred             hhhheeeecCCCCEEEEec--CCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCc-EEEEecccCCc
Confidence            3466777788889999998  5899999776655555444 479999999999764 66999999998 59999999998


Q ss_pred             EEEec
Q 019349          215 SYSFR  219 (342)
Q Consensus       215 ~~~~~  219 (342)
                      +.++.
T Consensus       228 L~t~d  232 (390)
T KOG3914|consen  228 LDTCD  232 (390)
T ss_pred             ccccc
Confidence            87664

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.24  E-value=0.0012  Score=59.23  Aligned_cols=173  Identities=13%  Similarity=0.161  Sum_probs=104.3

Q ss_pred             CeEEEEECCCCcEEEEEecCC--ceEEE---EEcC-----C-eEEEEE----------C-CeEEEEECCCC----ceeeE
Q 019349           75 RRLCLFNTTTGTALRELNFLT--SILAV---RLNK-----K-RLVIVL----------R-EKTYIYDANTL----AILDT  128 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~--~v~~i---~~~~-----~-~~~~~~----------d-~~i~i~d~~~~----~~~~~  128 (342)
                      ..|++.|..+.+.+.++.++.  .+.++   .+..     . .+++++          . |.|.+|++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            368899998888888777644  44444   3442     3 344443          1 78999999873    22222


Q ss_pred             EeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccC--CeeEEEECCCCCEEEEEeCCCcEEEE
Q 019349          129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA--PLAAIVLSSNGMYIATASEQGTIIRV  206 (342)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~--~v~~i~~s~dg~~lat~s~dg~~irl  206 (342)
                      +....-+..+.+++.-. +.++++.|    +.|.+|++...+.+.....+..  .+.++..  .+++++.|.....+ .+
T Consensus        82 i~~~~~~g~V~ai~~~~-~~lv~~~g----~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv-~~  153 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSFN-GRLVVAVG----NKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSV-SL  153 (321)
T ss_dssp             EEEEEESS-EEEEEEET-TEEEEEET----TEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSE-EE
T ss_pred             EEEEeecCcceEhhhhC-CEEEEeec----CEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCE-EE
Confidence            21112234566776663 34555444    6899999988773323222333  4555544  46699998876664 46


Q ss_pred             EEcC-CCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          207 FLVS-EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       207 wd~~-~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      +... ....+..+.+...+..++++.|-+|+.   .++++..+|.+.++....
T Consensus       154 ~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~---~~i~~D~~gnl~~l~~~~  203 (321)
T PF03178_consen  154 LRYDEENNKLILVARDYQPRWVTAAEFLVDED---TIIVGDKDGNLFVLRYNP  203 (321)
T ss_dssp             EEEETTTE-EEEEEEESS-BEEEEEEEE-SSS---EEEEEETTSEEEEEEE-S
T ss_pred             EEEEccCCEEEEEEecCCCccEEEEEEecCCc---EEEEEcCCCeEEEEEECC
Confidence            6443 344444554433455688999987776   899999999999999864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.23  E-value=0.0025  Score=54.65  Aligned_cols=184  Identities=16%  Similarity=0.124  Sum_probs=113.4

Q ss_pred             CCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEc-C-CeEEEEECCeEEEEECCCCceeeEEeC--CC
Q 019349           58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLN-K-KRLVIVLREKTYIYDANTLAILDTIDT--VP  133 (342)
Q Consensus        58 ~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~-~-~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~  133 (342)
                      .+.+.++..      ..+.|..||..+++. ..+..+. ..++.+. + ..++++..+.+.++|+.+++.......  ..
T Consensus        11 ~g~l~~~D~------~~~~i~~~~~~~~~~-~~~~~~~-~~G~~~~~~~g~l~v~~~~~~~~~d~~~g~~~~~~~~~~~~   82 (246)
T PF08450_consen   11 DGRLYWVDI------PGGRIYRVDPDTGEV-EVIDLPG-PNGMAFDRPDGRLYVADSGGIAVVDPDTGKVTVLADLPDGG   82 (246)
T ss_dssp             TTEEEEEET------TTTEEEEEETTTTEE-EEEESSS-EEEEEEECTTSEEEEEETTCEEEEETTTTEEEEEEEEETTC
T ss_pred             CCEEEEEEc------CCCEEEEEECCCCeE-EEEecCC-CceEEEEccCCEEEEEEcCceEEEecCCCcEEEEeeccCCC
Confidence            445555544      468899999887654 3355555 6666665 4 456666677888889988855433332  22


Q ss_pred             -CCceEEEEeeCCCccEEEEeCCCC----c--cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEE-eCCCcEEE
Q 019349          134 -NLKGLCAFSPSLNACFLAVPASTT----K--GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATA-SEQGTIIR  205 (342)
Q Consensus       134 -~~~~~~~~~~~~~~~~l~~~~~~~----~--g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~-s~dg~~ir  205 (342)
                       .......+..++++.+.++.....    .  |.|..++.. ++... +...-...+.|+|+||++.|..+ +..++ |.
T Consensus        83 ~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~-~~~~~~~pNGi~~s~dg~~lyv~ds~~~~-i~  159 (246)
T PF08450_consen   83 VPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV-VADGLGFPNGIAFSPDGKTLYVADSFNGR-IW  159 (246)
T ss_dssp             SCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-EEEEESSEEEEEEETTSSEEEEEETTTTE-EE
T ss_pred             cccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-EecCcccccceEECCcchheeecccccce-eE
Confidence             334555677778887666543111    1  678888877 44333 33334567899999999987655 44554 56


Q ss_pred             EEEcCC-Ce------eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          206 VFLVSE-AT------KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       206 lwd~~~-~~------~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      .+++.. +.      .+..+..  .....-.|++..+|.   +.++....+.|.+++.+
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~--~~g~pDG~~vD~~G~---l~va~~~~~~I~~~~p~  213 (246)
T PF08450_consen  160 RFDLDADGGELSNRRVFIDFPG--GPGYPDGLAVDSDGN---LWVADWGGGRIVVFDPD  213 (246)
T ss_dssp             EEEEETTTCCEEEEEEEEE-SS--SSCEEEEEEEBTTS----EEEEEETTTEEEEEETT
T ss_pred             EEeccccccceeeeeeEEEcCC--CCcCCCcceEcCCCC---EEEEEcCCCEEEEECCC
Confidence            777753 22      1222221  122477899999998   77777788999999966

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.20  E-value=0.00093  Score=62.04  Aligned_cols=219  Identities=11%  Similarity=0.094  Sum_probs=116.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      +.....+++||+|+.+++++++...||.....+-.....  +.. ..|.. .+.+++...       .++|+|+.--+.+
T Consensus        32 ~~~p~~ls~npngr~v~V~g~geY~iyt~~~~r~k~~G~--g~~-~vw~~-~n~yAv~~~-------~~~I~I~kn~~~~  100 (443)
T PF04053_consen   32 EIYPQSLSHNPNGRFVLVCGDGEYEIYTALAWRNKAFGS--GLS-FVWSS-RNRYAVLES-------SSTIKIYKNFKNE  100 (443)
T ss_dssp             SS--SEEEE-TTSSEEEEEETTEEEEEETTTTEEEEEEE---SE-EEE-T-SSEEEEE-T-------TS-EEEEETTEE-
T ss_pred             CcCCeeEEECCCCCEEEEEcCCEEEEEEccCCcccccCc--eeE-EEEec-CccEEEEEC-------CCeEEEEEcCccc
Confidence            345679999999999999888888999865554333221  222 23333 455666643       5788987433333


Q ss_pred             EEEEEecCCceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEc
Q 019349           87 ALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV  166 (342)
Q Consensus        87 ~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~  166 (342)
                      ....++.+..+..|.. +..+.+..++.|.+||+++++.++.++..    .+..+.+++++.++|..+   +..+.|++.
T Consensus       101 ~~k~i~~~~~~~~If~-G~LL~~~~~~~i~~yDw~~~~~i~~i~v~----~vk~V~Ws~~g~~val~t---~~~i~il~~  172 (443)
T PF04053_consen  101 VVKSIKLPFSVEKIFG-GNLLGVKSSDFICFYDWETGKLIRRIDVS----AVKYVIWSDDGELVALVT---KDSIYILKY  172 (443)
T ss_dssp             TT-----SS-EEEEE--SSSEEEEETTEEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE----S-SEEEEEE
T ss_pred             cceEEcCCcccceEEc-CcEEEEECCCCEEEEEhhHcceeeEEecC----CCcEEEEECCCCEEEEEe---CCeEEEEEe
Confidence            3345555555666655 55666666778999999999999998643    245667788888999887   345777664


Q ss_pred             cCC-----------ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee--EEEeccCcCceeEEEEEEe
Q 019349          167 MEL-----------HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       167 ~~~-----------~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~--~~~~~~~~~~~~v~~l~fs  233 (342)
                      ...           ..+..+..-...|.+.+|..| -++.|-. . + ++.  +..|+.  +..+     ..+++=+...
T Consensus       173 ~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~-~-~-lkY--l~~Ge~~~i~~l-----d~~~yllgy~  241 (443)
T PF04053_consen  173 NLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTS-N-H-LKY--LVNGETGIIAHL-----DKPLYLLGYL  241 (443)
T ss_dssp             -HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-T-T-E-EEE--EETTEEEEEEE------SS--EEEEEE
T ss_pred             cchhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcC-C-e-EEE--EEcCCcceEEEc-----CCceEEEEEE
Confidence            322           023333332467888888766 4444433 2 4 343  444442  2333     2246667777


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCC
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      |...   .+.....|+.|..+.+..
T Consensus       242 ~~~~---~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  242 PKEN---RLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             TTTT---EEEEE-TT--EEEEE--H
T ss_pred             ccCC---EEEEEECCCCEEEEEECH
Confidence            7665   788888888888887754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=98.19  E-value=0.002  Score=57.69  Aligned_cols=174  Identities=16%  Similarity=0.141  Sum_probs=103.0

Q ss_pred             CeEEEEECCCC-------cEEEEEecCCceEEEEEcCCeEEEEECCeEEEEECCCCc-eeeEEeCCCCCceEEEEeeCCC
Q 019349           75 RRLCLFNTTTG-------TALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLN  146 (342)
Q Consensus        75 ~~i~iwd~~~~-------~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~  146 (342)
                      +.|.++++.+.       +.+.+...+++|.+++...+.++++..+++++|++...+ +...-.. ..+..+.++....+
T Consensus        62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~-~~~~~i~sl~~~~~  140 (321)
T PF03178_consen   62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFY-DSPFYITSLSVFKN  140 (321)
T ss_dssp             EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEETT
T ss_pred             cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhhee-cceEEEEEEecccc
Confidence            88999999884       233455678899999988888888889999999998877 4433222 22335566665544


Q ss_pred             ccEEEEeCCCCccEEEEEEccC-CceeEEEe--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC-------Ce-eE
Q 019349          147 ACFLAVPASTTKGSVLVYNVME-LHSHCEID--AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-------AT-KS  215 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~-~~~~~~~~--~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~-------~~-~~  215 (342)
                        +++++..  ...|.++.... ...+..+.  .....++++.|-+|++.++.+..+|.+ .++....       +. .+
T Consensus       141 --~I~vgD~--~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl-~~l~~~~~~~~~~~~~~~L  215 (321)
T PF03178_consen  141 --YILVGDA--MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL-FVLRYNPEIPNSRDGDPKL  215 (321)
T ss_dssp             --EEEEEES--SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE-EEEEE-SS-SSTTTTTTBE
T ss_pred             --EEEEEEc--ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE-EEEEECCCCcccccccccc
Confidence              7776663  45577664433 22233332  234568888888777799999999985 5777652       22 22


Q ss_pred             EEeccCcCceeEEEE---EEecC--CCc---ccEEEEEeCCCcEEEE
Q 019349          216 YSFRRGTYPSTIFSL---SFGQS--MQF---QDILVATSSSGSLHVF  254 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l---~fs~d--~~~---~~~l~~~s~dg~i~vw  254 (342)
                      .....-+-...|+++   ++.|.  +..   .+.++.++.+|.|.+.
T Consensus       216 ~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  216 ERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             EEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             eeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence            221111122346666   55552  220   0148888999998844

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.19  E-value=0.0016  Score=56.66  Aligned_cols=184  Identities=12%  Similarity=0.179  Sum_probs=115.3

Q ss_pred             EEEEcCCCCEEEEEcC-----Cc-EEEEeCC-CCcEEEEEeeCCEEE--EEEcCCCCeEEEEcCCCCCC-----------
Q 019349           12 FVSFNQDNSGFALSTK-----DG-FKIFDSS-TGRLCYERAVGAFSI--VEMLYSSSLLAIVGAGEQPS-----------   71 (342)
Q Consensus        12 ~l~fs~d~~~la~g~~-----~g-~~v~d~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~-----------   71 (342)
                      .-.||+||++|.+.-.     .| +-|||.. +.+.+-+...+++.-  +.+.+++..++++-+|-.+-           
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            4579999999987532     34 5899998 445554444444431  34566777787777764432           


Q ss_pred             CCCCeEEEEECCCCcEEEEEecC-----CceEEEEEcCCeEEEEE---CC-------eEEEEECCCCceeeEEeCCCC--
Q 019349           72 LSPRRLCLFNTTTGTALRELNFL-----TSILAVRLNKKRLVIVL---RE-------KTYIYDANTLAILDTIDTVPN--  134 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~~~~~-----~~v~~i~~~~~~~~~~~---d~-------~i~i~d~~~~~~~~~~~~~~~--  134 (342)
                      ..+-.+.+.|..+|+.+....++     .+|+-+++..+..++..   .+       -+.+++-  ++.+..+..+..  
T Consensus       135 tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~  212 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQW  212 (305)
T ss_pred             hcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHH
Confidence            12344777888999988886653     27899999988877665   11       1333333  332333332211  


Q ss_pred             ---CceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCc
Q 019349          135 ---LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT  202 (342)
Q Consensus       135 ---~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~  202 (342)
                         ...+-+++.++++..+++++- ..|.+.+||..+++.+....-  ..+..++-.+++ +++|.+. |.
T Consensus       213 ~~l~~Y~gSIa~~~~g~~ia~tsP-rGg~~~~~d~~tg~~~~~~~l--~D~cGva~~~~~-f~~ssG~-G~  278 (305)
T PF07433_consen  213 RRLNGYIGSIAADRDGRLIAVTSP-RGGRVAVWDAATGRLLGSVPL--PDACGVAPTDDG-FLVSSGQ-GQ  278 (305)
T ss_pred             HhhCCceEEEEEeCCCCEEEEECC-CCCEEEEEECCCCCEeecccc--CceeeeeecCCc-eEEeCCC-cc
Confidence               123456666677777766654 679999999999987765443  345667776766 6666553 54

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.18  E-value=6.3e-05  Score=72.54  Aligned_cols=175  Identities=17%  Similarity=0.169  Sum_probs=119.3

Q ss_pred             EEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC-CceEEEE
Q 019349           23 ALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVR  101 (342)
Q Consensus        23 a~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~i~  101 (342)
                      ..|-.+-+..+|+.+.+.....+...-.+.-|. ..+.+.++|.      ..|+|.+=|..+.+.+.++..+ +.|.++.
T Consensus       152 ~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR-~Nnr~lf~G~------t~G~V~LrD~~s~~~iht~~aHs~siSDfD  224 (1118)
T KOG1275|consen  152 MGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR-YNNRNLFCGD------TRGTVFLRDPNSFETIHTFDAHSGSISDFD  224 (1118)
T ss_pred             ecchhhheeeeecccceeeeeeeccCCceEEEE-ecCcEEEeec------ccceEEeecCCcCceeeeeeccccceeeee
Confidence            334455577888888776655544332223333 3445555554      4899999999999999998754 5889999


Q ss_pred             EcCCeEEEEE----------CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEc---cC
Q 019349          102 LNKKRLVIVL----------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV---ME  168 (342)
Q Consensus       102 ~~~~~~~~~~----------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~---~~  168 (342)
                      +.++.++.++          |.-|++||++..+.+.-+..+..+ ...-+.|+-.. .+|+++  ..|+..+-|.   .+
T Consensus       225 v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t-~~~V~S--~sGq~q~vd~~~lsN  300 (1118)
T KOG1275|consen  225 VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTT-RLAVTS--QSGQFQFVDTATLSN  300 (1118)
T ss_pred             ccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccc-eEEEEe--cccceeeccccccCC
Confidence            9988887765          567999999988877666655554 23334443322 344444  4688999983   33


Q ss_pred             C-ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 019349          169 L-HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV  209 (342)
Q Consensus       169 ~-~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~  209 (342)
                      . ..+..+....+.+..+++|++|+.||.|..+|. |.+|.-
T Consensus       301 P~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~-v~~wa~  341 (1118)
T KOG1275|consen  301 PPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGH-VNLWAD  341 (1118)
T ss_pred             CccceeEEccCCCcceeEEecCCCceEEEecccCc-EeeecC
Confidence            2 123333344556999999999999999999997 589973

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.16  E-value=0.0046  Score=58.73  Aligned_cols=229  Identities=13%  Similarity=0.099  Sum_probs=124.4

Q ss_pred             CEEEEEcCCc-EEEEeCCCCcEEEEEeeCCE-----EEE-EEcCCCCeEEEEcCCCCC--CCCCCeEEEEECCCCcEEEE
Q 019349           20 SGFALSTKDG-FKIFDSSTGRLCYERAVGAF-----SIV-EMLYSSSLLAIVGAGEQP--SLSPRRLCLFNTTTGTALRE   90 (342)
Q Consensus        20 ~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~~~g~~~--~~~d~~i~iwd~~~~~~~~~   90 (342)
                      ..+.+++.++ +.-+|.++|+++........     .+. ........+.+.+.+...  .-.++.+...|..+|+.+..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            4566676666 58889999988766543221     000 000111333332211000  00257899999999999988


Q ss_pred             EecCCc---------------------eE-EEEEc--CCeEEEEE-CC------------------eEEEEECCCCceee
Q 019349           91 LNFLTS---------------------IL-AVRLN--KKRLVIVL-RE------------------KTYIYDANTLAILD  127 (342)
Q Consensus        91 ~~~~~~---------------------v~-~i~~~--~~~~~~~~-d~------------------~i~i~d~~~~~~~~  127 (342)
                      ++....                     +. ...+.  .+.+++.+ ++                  .+.-+|..+++.+.
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            765211                     00 12222  23444443 32                  68899999999988


Q ss_pred             EEeCCCCCc---------eEEEEe-eCCCcc-EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEE
Q 019349          128 TIDTVPNLK---------GLCAFS-PSLNAC-FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIAT  196 (342)
Q Consensus       128 ~~~~~~~~~---------~~~~~~-~~~~~~-~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat  196 (342)
                      .++...+..         .+..+. .++... .++.+.  .+|.+...|.++++.+-..+.-   ...++.+|  ..+..
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~--~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~--~~vyv  343 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP--KNGFFYVLDRTTGKLISARPEV---EQPMAYDP--GLVYL  343 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC--CCceEEEEECCCCcEeeEeEee---ccccccCC--ceEEE
Confidence            875432210         011110 112212 344444  5899999999999987554321   11233444  22222


Q ss_pred             E------------------eCCCcEEEEEEcCCCeeEEEeccCcCc------eeE--EEEEEecCCCcccEEEEEeCCCc
Q 019349          197 A------------------SEQGTIIRVFLVSEATKSYSFRRGTYP------STI--FSLSFGQSMQFQDILVATSSSGS  250 (342)
Q Consensus       197 ~------------------s~dg~~irlwd~~~~~~~~~~~~~~~~------~~v--~~l~fs~d~~~~~~l~~~s~dg~  250 (342)
                      +                  ..+|.+ .-.|+.+|+.+.+.......      .+.  ..++.  .+.   +|.+++.||.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~G~l-~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~---~v~~g~~dG~  417 (488)
T cd00216         344 GAFHIPLGLPPQKKKRCKKPGKGGL-AALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGN---LVFAGAADGY  417 (488)
T ss_pred             ccccccccCcccccCCCCCCCceEE-EEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCC---eEEEECCCCe
Confidence            2                  124554 47788888877766433110      011  11222  344   7888999999


Q ss_pred             EEEEecCCCCC
Q 019349          251 LHVFSPGFAIN  261 (342)
Q Consensus       251 i~vwd~~~~~~  261 (342)
                      |+.+|.++++.
T Consensus       418 l~ald~~tG~~  428 (488)
T cd00216         418 FRAFDATTGKE  428 (488)
T ss_pred             EEEEECCCCce
Confidence            99999988875

The alignment model contains an 8-bladed beta-propeller.

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.15  E-value=0.00028  Score=67.15  Aligned_cols=237  Identities=14%  Similarity=0.062  Sum_probs=144.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEE--EeeCCEEEEEEcCCC----------CeEEEEcCCCCCCCCC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE--RAVGAFSIVEMLYSS----------SLLAIVGAGEQPSLSP   74 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~----------~~~~~~~~g~~~~~~d   74 (342)
                      ...-.++.|+|.| ++|-|+...+.|-|..+-+.+-.  .+...+..+.|.+..          ..+.++++.     -.
T Consensus        15 ~sN~~A~Dw~~~G-LiAygshslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD-----~~   88 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSHSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASAD-----IS   88 (1062)
T ss_pred             cccccccccCccc-eEEEecCceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEecc-----cc
Confidence            3446688999887 47888877788888777665533  344566667775432          223344442     46


Q ss_pred             CeEEEEECCCCcEEEEEecCC-ceEEEEEcC------CeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC-
Q 019349           75 RRLCLFNTTTGTALRELNFLT-SILAVRLNK------KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL-  145 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~-~v~~i~~~~------~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-  145 (342)
                      |.|.+||...+..+..++++. ++.+++|-+      +.+++.. ...+.+||..+|+.+.......+  .+.++..+| 
T Consensus        89 GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~--iLs~f~~DPf  166 (1062)
T KOG1912|consen   89 GRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHE--ILSCFRVDPF  166 (1062)
T ss_pred             CcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCc--ceeeeeeCCC
Confidence            899999999988888887654 788888732      3333333 67999999999988877654433  455566655 


Q ss_pred             CccEEEEeCCCCccEEEEEEccC-------CceeEEEecccC----------------C---------eeEEEECCCCC-
Q 019349          146 NACFLAVPASTTKGSVLVYNVME-------LHSHCEIDAHQA----------------P---------LAAIVLSSNGM-  192 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~-------~~~~~~~~~h~~----------------~---------v~~i~~s~dg~-  192 (342)
                      +...+...+  ..|.+.+-+.-.       ++.++.-..|.+                .         .-..+|+|.=+ 
T Consensus       167 d~rh~~~l~--s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn  244 (1062)
T KOG1912|consen  167 DSRHFCVLG--SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRN  244 (1062)
T ss_pred             CcceEEEEc--cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhc
Confidence            334455555  357777766421       122211112222                0         01245677432 


Q ss_pred             EEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          193 YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       193 ~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      .+...-.. .+ .++|++-...+....-....  +.-+.+-|+.+ ++.|.+.-.||.+.+|--+.
T Consensus       245 ~lfi~~pr-el-lv~dle~~~~l~vvpier~~--akfv~vlP~~~-rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  245 ILFITFPR-EL-LVFDLEYECCLAVVPIERGG--AKFVDVLPDPR-RDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             eEEEEecc-ce-EEEcchhhceeEEEEeccCC--cceeEeccCCC-cceEEEEecCCeEEEEEeec
Confidence            22222333 34 59999877776665433222  33355566654 35899999999999996543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.15  E-value=3.8e-05  Score=72.77  Aligned_cols=124  Identities=18%  Similarity=0.175  Sum_probs=93.4

Q ss_pred             EeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCC------------CEEEE
Q 019349          129 IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG------------MYIAT  196 (342)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg------------~~lat  196 (342)
                      +....++....+..+++.| ++|+++   ...|.+-|.++.+.+++++-|...|+.|.|.|..            -.||+
T Consensus         9 lpG~l~~sN~~A~Dw~~~G-LiAygs---hslV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAs   84 (1062)
T KOG1912|consen    9 LPGPLSRSNRNAADWSPSG-LIAYGS---HSLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIAS   84 (1062)
T ss_pred             CCCCCCcccccccccCccc-eEEEec---CceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEe
Confidence            3344444455566666654 778776   3679999999999999999999999999997631            24677


Q ss_pred             EeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec---CCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          197 ASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ---SMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       197 ~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~---d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +...|++| +||...+..+..+..+  ..++..++|-+   +.+  ++|++-....+|-+|+..++..
T Consensus        85 aD~~GrIi-l~d~~~~s~~~~l~~~--~~~~qdl~W~~~rd~Sr--d~LlaIh~ss~lvLwntdtG~k  147 (1062)
T KOG1912|consen   85 ADISGRII-LVDFVLASVINWLSHS--NDSVQDLCWVPARDDSR--DVLLAIHGSSTLVLWNTDTGEK  147 (1062)
T ss_pred             ccccCcEE-EEEehhhhhhhhhcCC--CcchhheeeeeccCcch--heeEEecCCcEEEEEEccCCce
Confidence            77779976 9999998887777533  44577888754   443  4888889999999999888765

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=98.14  E-value=0.0028  Score=55.33  Aligned_cols=215  Identities=16%  Similarity=0.181  Sum_probs=124.7

Q ss_pred             CCCCEEEEEcCCcEEEEeC-CCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEE------
Q 019349           17 QDNSGFALSTKDGFKIFDS-STGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR------   89 (342)
Q Consensus        17 ~d~~~la~g~~~g~~v~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~------   89 (342)
                      ..++.|++|+++|+.+|+. .............+.-+.....-+.+++.+        |+++.++++..-....      
T Consensus         5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs--------d~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS--------DGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEECCCEEEEEecCCccceeEeecceEEEEEEecccCEEEEEc--------CCccEEEEchhhcccccccccc
Confidence            4677899999999999998 333333333334477777777778887775        5799999986544333      


Q ss_pred             ---------EEecCCceEEEE----EcC-CeEEEEECCeEEEEECCCC-----ceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349           90 ---------ELNFLTSILAVR----LNK-KRLVIVLREKTYIYDANTL-----AILDTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        90 ---------~~~~~~~v~~i~----~~~-~~~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                               .+.....+..++    ... ..++++...+|.+|.....     +..+++..+..+..   +++.++  .+
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~---i~~~~~--~i  151 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSS---IAFLGN--KI  151 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEE---EEEeCC--EE
Confidence                     111122344444    111 2445555789999888652     46677766655433   333333  55


Q ss_pred             EEeCCCCccEEEEEEccCCceeEEEec------------ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE--
Q 019349          151 AVPASTTKGSVLVYNVMELHSHCEIDA------------HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY--  216 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~------------h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~--  216 (342)
                      +.+.   .....+.|+.++.....+..            ...++..+.++ ++.+|+.-. + .-+ +.|. .|+...  
T Consensus       152 ~v~~---~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~~-~-~g~-fv~~-~G~~~r~~  223 (275)
T PF00780_consen  152 CVGT---SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCYD-N-IGV-FVNK-NGEPSRKS  223 (275)
T ss_pred             EEEe---CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEec-c-eEE-EEcC-CCCcCccc
Confidence            5553   24588889987665433211            12345555554 456676543 2 222 4444 554332  


Q ss_pred             EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          217 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      .+..   .....++++.  ..   +|++-+. +.|.||++.+++.
T Consensus       224 ~i~W---~~~p~~~~~~--~p---yli~~~~-~~iEV~~~~~~~l  259 (275)
T PF00780_consen  224 TIQW---SSAPQSVAYS--SP---YLIAFSS-NSIEVRSLETGEL  259 (275)
T ss_pred             EEEc---CCchhEEEEE--CC---EEEEECC-CEEEEEECcCCcE
Confidence            2222   2235566774  34   6776666 4599999998754

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.12  E-value=3.3e-05  Score=64.12  Aligned_cols=144  Identities=12%  Similarity=0.113  Sum_probs=82.4

Q ss_pred             EEEEeCCCCccEEEEEEccCCce-eEEEecccCCeeEEEECCCCCEEEEE------eCCCcEEEEEEcCCCeeEEEeccC
Q 019349          149 FLAVPASTTKGSVLVYNVMELHS-HCEIDAHQAPLAAIVLSSNGMYIATA------SEQGTIIRVFLVSEATKSYSFRRG  221 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~~-~~~~~~h~~~v~~i~~s~dg~~lat~------s~dg~~irlwd~~~~~~~~~~~~~  221 (342)
                      .+++++  .||.+.+++.+.... ...++.-...--+.++-..+++|.++      +.|. . +.|+++..+.+..-.  
T Consensus       103 ~V~~~~--~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~-~-~a~~~~p~~t~~~~~--  176 (319)
T KOG4714|consen  103 RVCIGY--ADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDN-F-YANTLDPIKTLIPSK--  176 (319)
T ss_pred             ceEecC--CCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccc-e-eeecccccccccccc--
Confidence            566666  689999998765321 12222211112223333444544443      3343 2 466665433221111  


Q ss_pred             cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCcc
Q 019349          222 TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVK  301 (342)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (342)
                      .....|.+++-+|..+  +++++|++||.+-+||.+....+-      +    ++..+...+|..-+|          |+
T Consensus       177 ~~~~~v~~l~~hp~qq--~~v~cgt~dg~~~l~d~rn~~~p~------S----~l~ahk~~i~eV~FH----------pk  234 (319)
T KOG4714|consen  177 KALDAVTALCSHPAQQ--HLVCCGTDDGIVGLWDARNVAMPV------S----LLKAHKAEIWEVHFH----------PK  234 (319)
T ss_pred             cccccchhhhCCcccc--cEEEEecCCCeEEEEEcccccchH------H----HHHHhhhhhhheecc----------CC
Confidence            1112388999999876  589999999999999988764322      1    222223345544332          22


Q ss_pred             -ccEEEEEEeCCcEEEEEEe
Q 019349          302 -RASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       302 -~~~l~~~~~dg~v~~~~~~  320 (342)
                       ...|++++.||.+..|+-+
T Consensus       235 ~p~~Lft~sedGslw~wdas  254 (319)
T KOG4714|consen  235 NPEHLFTCSEDGSLWHWDAS  254 (319)
T ss_pred             CchheeEecCCCcEEEEcCC
Confidence             2689999999999999765

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.12  E-value=2.6e-05  Score=73.40  Aligned_cols=199  Identities=13%  Similarity=0.169  Sum_probs=126.3

Q ss_pred             CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC-CcEEEEEec--CCceEEEEEcCC----eEEEEE-CCeEEEE
Q 019349           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT-GTALRELNF--LTSILAVRLNKK----RLVIVL-REKTYIY  118 (342)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~-~~~~~~~~~--~~~v~~i~~~~~----~~~~~~-d~~i~i~  118 (342)
                      +++..+.+.+.+.-+++++.        ..+.+-|+.. +.+..-+.+  +-.|-++.|++.    .-++.. ..+..+|
T Consensus        25 ~~~~a~si~p~grdi~lAsr--------~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts~qkaiiw   96 (1081)
T KOG0309|consen   25 GGFNAVSINPSGRDIVLASR--------QGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTSNQKAIIW   96 (1081)
T ss_pred             Ccccceeeccccchhhhhhh--------cCeEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecCcchhhhh
Confidence            56666677677766666653        3455666543 233222222  224566666543    223333 5577889


Q ss_pred             ECCCC--ceeeEEeCCCCCceEEEEeeCCCcc-EEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECC-CCCE
Q 019349          119 DANTL--AILDTIDTVPNLKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSS-NGMY  193 (342)
Q Consensus       119 d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~-dg~~  193 (342)
                      ++...  +.+ ++-.+.+..+++.+.++|+.. .+|++.  .|-.+..||+++.. ++..+..-...-..|+|+. +++.
T Consensus        97 nlA~ss~~aI-ef~lhghsraitd~n~~~q~pdVlatcs--vdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~v  173 (1081)
T KOG0309|consen   97 NLAKSSSNAI-EFVLHGHSRAITDINFNPQHPDVLATCS--VDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNV  173 (1081)
T ss_pred             hhhcCCccce-EEEEecCccceeccccCCCCCcceeecc--ccccceeeeccCCCcceeeeecccccCceeeecccCcch
Confidence            88532  222 334456666788887776543 566666  68999999999875 4455444344567789987 5555


Q ss_pred             EEEEeCCCcEEEEEEcCCCe-eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349          194 IATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       194 lat~s~dg~~irlwd~~~~~-~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~  262 (342)
                      ||+.  .|..|++||++.|. .+..+++  +...|++++|..--.  ..+.+.+.|++|++||.+...+.
T Consensus       174 lass--hg~~i~vwd~r~gs~pl~s~K~--~vs~vn~~~fnr~~~--s~~~s~~~d~tvkfw~y~kSt~e  237 (1081)
T KOG0309|consen  174 LASS--HGNDIFVWDLRKGSTPLCSLKG--HVSSVNSIDFNRFKY--SEIMSSSNDGTVKFWDYSKSTTE  237 (1081)
T ss_pred             hhhc--cCCceEEEeccCCCcceEEecc--cceeeehHHHhhhhh--hhhcccCCCCceeeecccccccc
Confidence            5543  35568999998764 5566654  456789999976433  16889999999999998765443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.08  E-value=0.0042  Score=54.75  Aligned_cols=59  Identities=20%  Similarity=0.313  Sum_probs=43.6

Q ss_pred             cEEEEEEccCCceeEEEecccCCeeEEEECCCCC-EEEEEe-CCCcEEEEEEcCCCeeEEEec
Q 019349          159 GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGM-YIATAS-EQGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       159 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~-~lat~s-~dg~~irlwd~~~~~~~~~~~  219 (342)
                      -.|.++|+.+++.+..++. ..++.+|.++.|.+ +|.+.+ .++. +.+||..+|+++.++.
T Consensus       269 teVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~-l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  269 TEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGT-LDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTE-EEEEETTT--EEEEE-
T ss_pred             eEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCe-EEEEeCcCCcEEeehh
Confidence            3677889999999988874 34688999999876 565544 4666 4799999999988775

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.06  E-value=0.0054  Score=52.08  Aligned_cols=159  Identities=12%  Similarity=0.115  Sum_probs=94.7

Q ss_pred             ceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCC-----CceEEEEeeCC---C----ccEEEEeCCCCccE
Q 019349           96 SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPN-----LKGLCAFSPSL---N----ACFLAVPASTTKGS  160 (342)
Q Consensus        96 ~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~---~----~~~l~~~~~~~~g~  160 (342)
                      .-+.++|++|..+++.   .|+|++||+... .+..+.....     ...+..+.+-+   .    ..+|+. .  ..|.
T Consensus        45 QWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi-~--Y~G~  120 (282)
T PF15492_consen   45 QWRKLAWSPDCTLLAYAESTGTIRVFDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVI-N--YRGQ  120 (282)
T ss_pred             hheEEEECCCCcEEEEEcCCCeEEEEecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEE-e--ccce
Confidence            4578999999766655   679999999653 3333321111     11223222211   1    123333 3  3577


Q ss_pred             EEEEEccC-----CceeEEEe--c-ccCCeeEEEECCCCCEEEEEeCCC-c---------EEEEEEcCCCeeEEEe----
Q 019349          161 VLVYNVME-----LHSHCEID--A-HQAPLAAIVLSSNGMYIATASEQG-T---------IIRVFLVSEATKSYSF----  218 (342)
Q Consensus       161 i~iwd~~~-----~~~~~~~~--~-h~~~v~~i~~s~dg~~lat~s~dg-~---------~irlwd~~~~~~~~~~----  218 (342)
                      ++-|-+..     .+...++.  . +...|+++.++|..++|+.||... .         -+--|.+-++..-+..    
T Consensus       121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~  200 (282)
T PF15492_consen  121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSS  200 (282)
T ss_pred             eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEcccc
Confidence            77776532     22333332  2 467899999999989888876421 0         0235665444321110    


Q ss_pred             -----------------------ccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          219 -----------------------RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       219 -----------------------~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                                             +.+.....|..|.+|||++   +||+...+|.|.+|++..-..
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~---~La~ih~sG~lsLW~iPsL~~  263 (282)
T PF15492_consen  201 EDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGS---LLACIHFSGSLSLWEIPSLRL  263 (282)
T ss_pred             CccccccccccceeeccceeeeeccccCCCceEEEEECCCCC---EEEEEEcCCeEEEEecCcchh
Confidence                                   0111233489999999999   999999999999999876544

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.05  E-value=0.0053  Score=51.49  Aligned_cols=103  Identities=13%  Similarity=0.239  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCcE-EEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCc
Q 019349           19 NSGFALSTKDGF-KIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTS   96 (342)
Q Consensus        19 ~~~la~g~~~g~-~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~   96 (342)
                      .+++++|+-.+. .--|..+|++..+... ..+..-.+. -+++ +++|.      ..+.+.+.+.++|.....+.....
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdf-VV~GC------y~g~lYfl~~~tGs~~w~f~~~~~   94 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDF-VVLGC------YSGGLYFLCVKTGSQIWNFVILET   94 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCE-EEEEE------ccCcEEEEEecchhheeeeeehhh
Confidence            355677877774 6778999988776543 233333333 2344 34443      478899999999988877765554


Q ss_pred             eEE---EEEcCCeEEEEE-CCeEEEEECCCCceeeEE
Q 019349           97 ILA---VRLNKKRLVIVL-REKTYIYDANTLAILDTI  129 (342)
Q Consensus        97 v~~---i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~  129 (342)
                      |..   ++++...+...+ |+..+..|..+...+.+.
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVyks  131 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKS  131 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEecccccceEEec
Confidence            432   334444455555 778888888776666554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.05  E-value=0.00021  Score=68.17  Aligned_cols=144  Identities=14%  Similarity=0.178  Sum_probs=98.0

Q ss_pred             ceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEE
Q 019349           96 SILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE  174 (342)
Q Consensus        96 ~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~  174 (342)
                      .+.+++++...+++.+ .|.+++++.... . .+...+.        +.+.+|.++++++  .||+|.|--+-+.+...+
T Consensus        41 ~is~~av~~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s--------~~~~~Gey~asCS--~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   41 AISCCAVHDKFFALGTHRGAVYLTTCQGN-P-KTNFDHS--------SSILEGEYVASCS--DDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             HHHHHHhhcceeeeccccceEEEEecCCc-c-ccccccc--------ccccCCceEEEec--CCCcEEEeeccCCcccee
Confidence            4566777777777777 779999987532 1 1111111        1155688999988  799999999888776655


Q ss_pred             EecccCCeeEEEECCC-----CCEEEEEeCCCcEEEEEEcCC-CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC
Q 019349          175 IDAHQAPLAAIVLSSN-----GMYIATASEQGTIIRVFLVSE-ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS  248 (342)
Q Consensus       175 ~~~h~~~v~~i~~s~d-----g~~lat~s~dg~~irlwd~~~-~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d  248 (342)
                      +. ...|+.+|+++||     .+++++|+..| ++ ++.-+- |.+... ..+...++|.++.|.  |.   ++|-++++
T Consensus       109 ~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lv-L~er~wlgnk~~v-~l~~~eG~I~~i~W~--g~---lIAWand~  179 (846)
T KOG2066|consen  109 YD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LV-LSERNWLGNKDSV-VLSEGEGPIHSIKWR--GN---LIAWANDD  179 (846)
T ss_pred             Ee-cCCcceeEEeccchhhhhhhheeecCcce-EE-EehhhhhcCccce-eeecCccceEEEEec--Cc---EEEEecCC
Confidence            54 3578999999998     57899999888 65 554321 111111 122335679999997  55   78877766


Q ss_pred             CcEEEEecCCCCC
Q 019349          249 GSLHVFSPGFAIN  261 (342)
Q Consensus       249 g~i~vwd~~~~~~  261 (342)
                      | |+|||+.....
T Consensus       180 G-v~vyd~~~~~~  191 (846)
T KOG2066|consen  180 G-VKVYDTPTRQR  191 (846)
T ss_pred             C-cEEEeccccce
Confidence            5 79999887654

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.04  E-value=0.0085  Score=57.12  Aligned_cols=220  Identities=14%  Similarity=0.109  Sum_probs=123.5

Q ss_pred             EEcCCCCEEEEEcC-Cc-EEEEeCCCCcEEEEEeeC-CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349           14 SFNQDNSGFALSTK-DG-FKIFDSSTGRLCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (342)
Q Consensus        14 ~fs~d~~~la~g~~-~g-~~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~   90 (342)
                      =++|||+.+...++ .+ +.+.|.++.++..+...+ ....+.+.+++.++++.+-...   ...++..-+......+..
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE---~G~tl~em~a~e~d~~vv  275 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSE---EGVTLAEMMAAERDWVVV  275 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcc---cCcceeeeccccCceEEE
Confidence            34668876643332 22 467788877665554332 2234556666666655531000   122333333322222222


Q ss_pred             EecCCceEEEEEcCCeEEEEECCeEEEEECCC-----CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEE
Q 019349           91 LNFLTSILAVRLNKKRLVIVLREKTYIYDANT-----LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN  165 (342)
Q Consensus        91 ~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd  165 (342)
                      +.... +..+.-..+...+ .+++|.+.|..+     .+.+..+.....+.++   ..+||+.++++++. .+++|.|+|
T Consensus       276 fni~~-iea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV---~vSPDGkylyVank-lS~tVSVID  349 (635)
T PRK02888        276 FNIAR-IEEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPVPKNPHGV---NTSPDGKYFIANGK-LSPTVTVID  349 (635)
T ss_pred             EchHH-HHHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEECCCCccce---EECCCCCEEEEeCC-CCCcEEEEE
Confidence            21110 0111112222332 467899999988     5677778776665544   56788889988886 689999999


Q ss_pred             ccCCce------------eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC----------CeeEEEeccCcC
Q 019349          166 VMELHS------------HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE----------ATKSYSFRRGTY  223 (342)
Q Consensus       166 ~~~~~~------------~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~----------~~~~~~~~~~~~  223 (342)
                      +.+.+.            +...+--.+| ...+|+++|+...|-..|..++ .|++..          ...+.++.-+..
T Consensus       350 v~k~k~~~~~~~~~~~~vvaevevGlGP-LHTaFDg~G~aytslf~dsqv~-kwn~~~a~~~~~g~~~~~v~~k~dV~y~  427 (635)
T PRK02888        350 VRKLDDLFDGKIKPRDAVVAEPELGLGP-LHTAFDGRGNAYTTLFLDSQIV-KWNIEAAIRAYKGEKVDPIVQKLDVHYQ  427 (635)
T ss_pred             ChhhhhhhhccCCccceEEEeeccCCCc-ceEEECCCCCEEEeEeecceeE-EEehHHHHHHhccccCCcceecccCCCc
Confidence            987653            3333332333 4578999999888888888865 799876          223333433333


Q ss_pred             ceeEEE---EEEecCCCcccEEEEEeC
Q 019349          224 PSTIFS---LSFGQSMQFQDILVATSS  247 (342)
Q Consensus       224 ~~~v~~---l~fs~d~~~~~~l~~~s~  247 (342)
                      ++++..   =.-.|||+   +|++...
T Consensus       428 pgh~~~~~g~t~~~dgk---~l~~~nk  451 (635)
T PRK02888        428 PGHNHASMGETKEADGK---WLVSLNK  451 (635)
T ss_pred             cceeeecCCCcCCCCCC---EEEEccc
Confidence            333221   12357888   7776543

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.02  E-value=0.00022  Score=65.16  Aligned_cols=144  Identities=13%  Similarity=0.266  Sum_probs=93.7

Q ss_pred             CCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC---------eEEEE-ECCeEEEEECCCC-c
Q 019349           56 YSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK---------RLVIV-LREKTYIYDANTL-A  124 (342)
Q Consensus        56 ~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~---------~~~~~-~d~~i~i~d~~~~-~  124 (342)
                      .+.+.+++.++      ..+.|+-.|+++|+.+.+..+...|.-+.+.++         ..++. +++.|.-||.+-. +
T Consensus       343 ~dsnlil~~~~------~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~  416 (644)
T KOG2395|consen  343 ADSNLILMDGG------EQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK  416 (644)
T ss_pred             cccceEeeCCC------CcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCc
Confidence            34455555544      467899999999999999998777665555543         33333 3789999998622 1


Q ss_pred             -eeeEEeCCC--CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC
Q 019349          125 -ILDTIDTVP--NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG  201 (342)
Q Consensus       125 -~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg  201 (342)
                       .+...+.+.  ......|++..++| ++++++  .+|.|++||-........+++-..+|..|..+.||++|+.-+. .
T Consensus       417 ~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS--~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-t  492 (644)
T KOG2395|consen  417 NKLAVVQSKQYSTKNNFSCFATTESG-YIVVGS--LKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCK-T  492 (644)
T ss_pred             ceeeeeeccccccccccceeeecCCc-eEEEee--cCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEecc-c
Confidence             121111111  11234455555555 666666  5899999997333334457888999999999999999876664 3


Q ss_pred             cEEEEEEcC
Q 019349          202 TIIRVFLVS  210 (342)
Q Consensus       202 ~~irlwd~~  210 (342)
                      .+ -|-++.
T Consensus       493 yL-lLi~t~  500 (644)
T KOG2395|consen  493 YL-LLIDTL  500 (644)
T ss_pred             EE-EEEEEe
Confidence            44 377663

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.002  Score=62.15  Aligned_cols=201  Identities=13%  Similarity=0.122  Sum_probs=112.9

Q ss_pred             EEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe--eCC-EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC----
Q 019349           14 SFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG----   85 (342)
Q Consensus        14 ~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~----   85 (342)
                      +|++.+..++.|+.+| +.++| ...+.+....  ... +..+......++++.++-+..+  +...|++||+..-    
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~--np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQG--NPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHhhcccCceEEEEEeecCCC--CceEEEEecccccCCCC
Confidence            5678888899999887 44444 2233323222  223 2223333334566666654332  2338999998542    


Q ss_pred             --cEEE---EEe--c---CCceEEEEEcCCeEEE-EE--CCeEEEEECC--CCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349           86 --TALR---ELN--F---LTSILAVRLNKKRLVI-VL--REKTYIYDAN--TLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        86 --~~~~---~~~--~---~~~v~~i~~~~~~~~~-~~--d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                        +++.   .+.  +   +.++..++++.+...+ ++  +|.|..+.-.  ..+-.+..-.+.....+.++....++..+
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~  186 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSV  186 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCcee
Confidence              2331   111  2   2366777777664333 33  7888887432  11111222223344456666665555442


Q ss_pred             EEeCCCCccEEEEEEccCCce-eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC
Q 019349          151 AVPASTTKGSVLVYNVMELHS-HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG  221 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~~~~-~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~  221 (342)
                      ....  +...|.+|.+....+ ...+..|..+++|-++++....++.|+..+  +.+||....+.-..|..+
T Consensus       187 lFv~--Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~--l~fY~sd~~~~cfaf~~g  254 (933)
T KOG2114|consen  187 LFVA--TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEF--LYFYDSDGRGPCFAFEVG  254 (933)
T ss_pred             EEEE--ecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCce--EEEEcCCCcceeeeecCC
Confidence            2222  246799999884443 455778889999999998655466665554  579998765555566533

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=98.01  E-value=0.00095  Score=65.54  Aligned_cols=133  Identities=15%  Similarity=0.226  Sum_probs=90.7

Q ss_pred             CCeEEEEECCCCceeeEEeCCCCCceEEEEeeC-------CCccEEEEeCCCCccEEEEEEccCCc--eeEE-Ee--ccc
Q 019349          112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS-------LNACFLAVPASTTKGSVLVYNVMELH--SHCE-ID--AHQ  179 (342)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~g~i~iwd~~~~~--~~~~-~~--~h~  179 (342)
                      .+.++-.|++.|+.+..+..+.+. .+..+++.       +...++..    .+..+..||.+-..  .+.. .+  ...
T Consensus       503 ~~~ly~mDLe~GKVV~eW~~~~~~-~v~~~~p~~K~aqlt~e~tflGl----s~n~lfriDpR~~~~k~v~~~~k~Y~~~  577 (794)
T PF08553_consen  503 PNKLYKMDLERGKVVEEWKVHDDI-PVVDIAPDSKFAQLTNEQTFLGL----SDNSLFRIDPRLSGNKLVDSQSKQYSSK  577 (794)
T ss_pred             CCceEEEecCCCcEEEEeecCCCc-ceeEecccccccccCCCceEEEE----CCCceEEeccCCCCCceeeccccccccC
Confidence            358999999999999999886653 25666654       22333333    35779999987532  2211 11  234


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          180 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       180 ~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      ...+|++-+.+| +||.||.+|. ||+||- .|+.-++.-.+ -..+|..|..+.||+   ||++++. ..+-+++..
T Consensus       578 ~~Fs~~aTt~~G-~iavgs~~G~-IRLyd~-~g~~AKT~lp~-lG~pI~~iDvt~DGk---wilaTc~-tyLlLi~t~  647 (794)
T PF08553_consen  578 NNFSCFATTEDG-YIAVGSNKGD-IRLYDR-LGKRAKTALPG-LGDPIIGIDVTADGK---WILATCK-TYLLLIDTL  647 (794)
T ss_pred             CCceEEEecCCc-eEEEEeCCCc-EEeecc-cchhhhhcCCC-CCCCeeEEEecCCCc---EEEEeec-ceEEEEEEe
Confidence            578899888887 5999999998 699994 45433333222 245799999999999   8777664 467777753

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.96  E-value=0.0018  Score=63.66  Aligned_cols=132  Identities=13%  Similarity=0.327  Sum_probs=90.2

Q ss_pred             CCCeEEEEECCCCcEEEEEecCC--ceEEEEEc-------CCeEEEEE-CCeEEEEECCCC--ceeeE-EeCCCCCceEE
Q 019349           73 SPRRLCLFNTTTGTALRELNFLT--SILAVRLN-------KKRLVIVL-REKTYIYDANTL--AILDT-IDTVPNLKGLC  139 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~-------~~~~~~~~-d~~i~i~d~~~~--~~~~~-~~~~~~~~~~~  139 (342)
                      .++.|.-.|+.+|+.+.++....  +|.+++..       +...+++. ++.+..||.+-.  +++.. ...-.......
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs  581 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFS  581 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCCce
Confidence            46889999999999999998765  45666543       33445544 789999999753  23321 11111223455


Q ss_pred             EEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 019349          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV  209 (342)
Q Consensus       140 ~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~  209 (342)
                      |++-.++| +||+++  .+|.||+||-........|++-..||..|..+.||++|+..+.. -+ -|+++
T Consensus       582 ~~aTt~~G-~iavgs--~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yL-lLi~t  646 (794)
T PF08553_consen  582 CFATTEDG-YIAVGS--NKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YL-LLIDT  646 (794)
T ss_pred             EEEecCCc-eEEEEe--CCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eE-EEEEE
Confidence            67776666 666666  58999999943323334567888999999999999998877654 34 47876

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=3.5e-05  Score=67.71  Aligned_cols=96  Identities=13%  Similarity=0.129  Sum_probs=80.7

Q ss_pred             EEEEEccCCceeEEEecccCCeeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcc
Q 019349          161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ  239 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~-~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~  239 (342)
                      |++.+..+.+....+..|...|..++|||..+ +|..++.+.+ |+|.|+++...+..+..+   ..+++++|.-|+.  
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nk-iki~dlet~~~vssy~a~---~~~wSC~wDlde~--  248 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNK-IKIMDLETSCVVSSYIAY---NQIWSCCWDLDER--  248 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCce-EEEEecccceeeeheecc---CCceeeeeccCCc--
Confidence            88888888887777888999999999999877 7888888765 799999998877766432   4589999999887  


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCC
Q 019349          240 DILVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       240 ~~l~~~s~dg~i~vwd~~~~~~~  262 (342)
                      ++|.+|-..|.|.|||++.++.+
T Consensus       249 h~IYaGl~nG~VlvyD~R~~~~~  271 (463)
T KOG1645|consen  249 HVIYAGLQNGMVLVYDMRQPEGP  271 (463)
T ss_pred             ceeEEeccCceEEEEEccCCCch
Confidence            69999999999999999887643

>PRK02888 nitrous-oxide reductase; Validated

Probab=97.91  E-value=0.0071  Score=57.62  Aligned_cols=168  Identities=10%  Similarity=0.022  Sum_probs=99.1

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeC------CCc
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPS------LNA  147 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~------~~~  147 (342)
                      .+.+.+.|..+.+.+.++........+.+++++-.+..    -.||.+.+..+..+..... ..+..+.+.      +++
T Consensus       214 ~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afv----TsyNsE~G~tl~em~a~e~-d~~vvfni~~iea~vkdG  288 (635)
T PRK02888        214 RSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFS----TCYNSEEGVTLAEMMAAER-DWVVVFNIARIEEAVKAG  288 (635)
T ss_pred             eEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEE----eccCcccCcceeeeccccC-ceEEEEchHHHHHhhhCC
Confidence            34556666666666555555554444555544222211    1122333444444433221 123333322      244


Q ss_pred             cEEEEeCCCCccEEEEEEccC-----CceeEEEecccCCeeEEEECCCCCEEEEEeC-CCcEEEEEEcCCCee-------
Q 019349          148 CFLAVPASTTKGSVLVYNVME-----LHSHCEIDAHQAPLAAIVLSSNGMYIATASE-QGTIIRVFLVSEATK-------  214 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~-----~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~-dg~~irlwd~~~~~~-------  214 (342)
                      .+....    ++.|.+.|.++     .+.+..+..- .....|++||||++++.++. +.+ +-|.|+.+.+.       
T Consensus       289 K~~~V~----gn~V~VID~~t~~~~~~~v~~yIPVG-KsPHGV~vSPDGkylyVanklS~t-VSVIDv~k~k~~~~~~~~  362 (635)
T PRK02888        289 KFKTIG----GSKVPVVDGRKAANAGSALTRYVPVP-KNPHGVNTSPDGKYFIANGKLSPT-VTVIDVRKLDDLFDGKIK  362 (635)
T ss_pred             CEEEEC----CCEEEEEECCccccCCcceEEEEECC-CCccceEECCCCCEEEEeCCCCCc-EEEEEChhhhhhhhccCC
Confidence            444442    36799999988     4556666643 34578999999999888775 455 57999987653       


Q ss_pred             -----EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          215 -----SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       215 -----~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                           ..+..-+.  + -...+|.++|.   ...+---|..|-.|++++
T Consensus       363 ~~~~vvaevevGl--G-PLHTaFDg~G~---aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        363 PRDAVVAEPELGL--G-PLHTAFDGRGN---AYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             ccceEEEeeccCC--C-cceEEECCCCC---EEEeEeecceeEEEehHH
Confidence                 33333222  2 23468999987   788888899999999987

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.91  E-value=0.02  Score=53.27  Aligned_cols=245  Identities=14%  Similarity=0.118  Sum_probs=128.6

Q ss_pred             eEEEEEcCCCCEEEEEcC-Cc-----EEEEeCCCCcEEEEEeeCCE-EEEEEcCCCCeEEEEcCCCCC----CCCCCeEE
Q 019349           10 VFFVSFNQDNSGFALSTK-DG-----FKIFDSSTGRLCYERAVGAF-SIVEMLYSSSLLAIVGAGEQP----SLSPRRLC   78 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~~-~g-----~~v~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~----~~~d~~i~   78 (342)
                      +...++||||++||.+.+ .|     ++++|+.+++.+...-.... ..+.|..+++.+.....+...    ......|.
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            346789999999987632 22     58999999977654322111 227888887777776654221    11266799


Q ss_pred             EEECCCCcEE--EEEecC--Cc-eEEEEEcCCe--EEEEE----C-CeEEEEECCCC----ceeeEEeCCCCCceEEEEe
Q 019349           79 LFNTTTGTAL--RELNFL--TS-ILAVRLNKKR--LVIVL----R-EKTYIYDANTL----AILDTIDTVPNLKGLCAFS  142 (342)
Q Consensus        79 iwd~~~~~~~--~~~~~~--~~-v~~i~~~~~~--~~~~~----d-~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~  142 (342)
                      .|++.++..-  .-++.+  .. ...+..+++.  +++..    + ..+++.++...    .....+...... ....+.
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~-~~~~v~  284 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG-VEYYVD  284 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS--EEEEE
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc-eEEEEE
Confidence            9998876532  233322  23 5667776653  33333    3 56888898774    223333222221 122233


Q ss_pred             eCCCccEEEEeCCCCccEEEEEEccCCce---eEEEecccC--CeeEEEECCCCCEEEE-EeCCCc-EEEEEEcCCCeeE
Q 019349          143 PSLNACFLAVPASTTKGSVLVYNVMELHS---HCEIDAHQA--PLAAIVLSSNGMYIAT-ASEQGT-IIRVFLVSEATKS  215 (342)
Q Consensus       143 ~~~~~~~l~~~~~~~~g~i~iwd~~~~~~---~~~~~~h~~--~v~~i~~s~dg~~lat-~s~dg~-~irlwd~~~~~~~  215 (342)
                      ..++..++.+......+.|...++.....   ...+..|..  .+..+..  .+.+|+. --.++. .|+++++..+...
T Consensus       285 ~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~~~~~~~~~  362 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSL--FKDYLVLSYRENGSSRLRVYDLDDGKES  362 (414)
T ss_dssp             EETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEE--ETTEEEEEEEETTEEEEEEEETT-TEEE
T ss_pred             ccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEE--ECCEEEEEEEECCccEEEEEECCCCcEE
Confidence            33333444443322467888888877653   235555665  3555544  3444444 444432 2578998844444


Q ss_pred             EEeccCcCceeEEEEEEecCCCcccEEEEEeCC---CcEEEEecCCCC
Q 019349          216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAI  260 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd~~~~~  260 (342)
                      ..+... ..+.|..+...+++.  .+++..++-   +++..||+.+++
T Consensus       363 ~~~~~p-~~g~v~~~~~~~~~~--~~~~~~ss~~~P~~~y~~d~~t~~  407 (414)
T PF02897_consen  363 REIPLP-EAGSVSGVSGDFDSD--ELRFSYSSFTTPPTVYRYDLATGE  407 (414)
T ss_dssp             EEEESS-SSSEEEEEES-TT-S--EEEEEEEETTEEEEEEEEETTTTC
T ss_pred             eeecCC-cceEEeccCCCCCCC--EEEEEEeCCCCCCEEEEEECCCCC
Confidence            444322 233466666556554  234443332   467777777665

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.88  E-value=0.012  Score=50.09  Aligned_cols=179  Identities=13%  Similarity=0.080  Sum_probs=105.2

Q ss_pred             EEEEEcCCCCEEEEEcCCc---EEEEeCCCCcEEEEEeeCCEEEE-EEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349           11 FFVSFNQDNSGFALSTKDG---FKIFDSSTGRLCYERAVGAFSIV-EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus        11 ~~l~fs~d~~~la~g~~~g---~~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      ..+.|..+|.++-+.+..|   ++.+|+.+++.........-..- .+..-.+.+....-      ..+...+||..+-+
T Consensus        48 QGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTW------k~~~~f~yd~~tl~  121 (264)
T PF05096_consen   48 QGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTW------KEGTGFVYDPNTLK  121 (264)
T ss_dssp             EEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEES------SSSEEEEEETTTTE
T ss_pred             ccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEe------cCCeEEEEccccce
Confidence            4667766777655544443   69999999987655443221110 01111344544543      58999999999999


Q ss_pred             EEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceE---EEEeeCCCccEEEEeCCCCccEEE
Q 019349           87 ALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL---CAFSPSLNACFLAVPASTTKGSVL  162 (342)
Q Consensus        87 ~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~g~i~  162 (342)
                      .+.++.++..=.+++...+.+++.. ..+++++|-.+.+..+.+....+...+   .-+-.- ++...|-.=  ....|.
T Consensus       122 ~~~~~~y~~EGWGLt~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW--~td~I~  198 (264)
T PF05096_consen  122 KIGTFPYPGEGWGLTSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVW--QTDRIV  198 (264)
T ss_dssp             EEEEEE-SSS--EEEECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEET--TSSEEE
T ss_pred             EEEEEecCCcceEEEcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeC--CCCeEE
Confidence            9999999888888997777665554 458999999888888877554332222   112221 343444332  345677


Q ss_pred             EEEccCCceeEEEec------------c---cCCeeEEEECCCCCEEEEEe
Q 019349          163 VYNVMELHSHCEIDA------------H---QAPLAAIVLSSNGMYIATAS  198 (342)
Q Consensus       163 iwd~~~~~~~~~~~~------------h---~~~v~~i~~s~dg~~lat~s  198 (342)
                      ..|..+|+.+..+..            +   ..-.+.||+.|+...|..-+
T Consensus       199 ~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  199 RIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            788888887665520            1   24589999988665444433

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00320 WD40 WD40 repeats

Probab=97.86  E-value=5.2e-05  Score=43.42  Aligned_cols=38  Identities=29%  Similarity=0.614  Sum_probs=33.3

Q ss_pred             ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349          170 HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL  208 (342)
Q Consensus       170 ~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd  208 (342)
                      ++...+..|...|+++.|+++++++++++.|+. +++|+
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~-~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGT-IKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCCEEEEecCCCe-EEEcC
Confidence            456677789999999999999999999999997 58996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.81  E-value=0.00021  Score=61.04  Aligned_cols=155  Identities=13%  Similarity=0.252  Sum_probs=92.2

Q ss_pred             CCceEEEEEcCCeEEEE-ECC-eEEEEECCCC-ceeeEEeCCCCC-----ceEEEEeeCCCcc-EEEEeCCCCccEEEEE
Q 019349           94 LTSILAVRLNKKRLVIV-LRE-KTYIYDANTL-AILDTIDTVPNL-----KGLCAFSPSLNAC-FLAVPASTTKGSVLVY  164 (342)
Q Consensus        94 ~~~v~~i~~~~~~~~~~-~d~-~i~i~d~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~~~-~l~~~~~~~~g~i~iw  164 (342)
                      +-.|.++.++.+.-... .|. +|.+|+++-. .....+...++.     .-+.+.-++|..+ .+.+++  ..|.|++-
T Consensus       172 ~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs--SkG~Ikl~  249 (460)
T COG5170         172 PYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS--SKGEIKLN  249 (460)
T ss_pred             eeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec--CCCcEEeh
Confidence            33678899977654443 344 9999998643 222222222221     1122333444333 333444  47999999


Q ss_pred             EccCCce----eE----E--------EecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC-eeEEEeccCc-----
Q 019349          165 NVMELHS----HC----E--------IDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-TKSYSFRRGT-----  222 (342)
Q Consensus       165 d~~~~~~----~~----~--------~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~-~~~~~~~~~~-----  222 (342)
                      |++....    ..    +        +.+-.+.|..+.|+++|+++++-+-- + +++||++.. .++.++..+.     
T Consensus       250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-t-vkiwDvnm~k~pikTi~~h~~l~~~  327 (460)
T COG5170         250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-T-VKIWDVNMAKNPIKTIPMHCDLMDE  327 (460)
T ss_pred             hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-e-EEEEecccccCCceeechHHHHHHH
Confidence            9984321    01    1        12233568889999999999987654 4 689999865 3555553211     


Q ss_pred             -----Ccee---EEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          223 -----YPST---IFSLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       223 -----~~~~---v~~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                           ....   -..+.||-|.+   .+.+||-.+..-+|-
T Consensus       328 l~d~YEnDaifdkFeisfSgd~~---~v~sgsy~NNfgiyp  365 (460)
T COG5170         328 LNDVYENDAIFDKFEISFSGDDK---HVLSGSYSNNFGIYP  365 (460)
T ss_pred             HHhhhhccceeeeEEEEecCCcc---cccccccccceeeec
Confidence                 0111   24578998888   788888877776665

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.80  E-value=0.018  Score=49.20  Aligned_cols=162  Identities=12%  Similarity=0.108  Sum_probs=104.1

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCce--EEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349           73 SPRRLCLFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
                      ....|+.+|+.+|+......++...  -+++..++.++..+  ++...+||..+.+.+.++.-...   -..++.++  .
T Consensus        66 G~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~E---GWGLt~dg--~  140 (264)
T PF05096_consen   66 GQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGE---GWGLTSDG--K  140 (264)
T ss_dssp             TEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS-----EEEECS--S
T ss_pred             CcEEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEecCCeEEEEccccceEEEEEecCCc---ceEEEcCC--C
Confidence            3568999999999999888887754  56888889888888  88999999999999988876543   33444443  3


Q ss_pred             EEEEeCCCCccEEEEEEccCCceeEEEecc--c---CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc---
Q 019349          149 FLAVPASTTKGSVLVYNVMELHSHCEIDAH--Q---APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR---  220 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h--~---~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~---  220 (342)
                      .|..+.  ....++.+|..+.+....+.-.  .   ..++-+.+- +|...|=-=....+ -..|..+|+.+..+.-   
T Consensus       141 ~Li~SD--GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I-~~Idp~tG~V~~~iDls~L  216 (264)
T PF05096_consen  141 RLIMSD--GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI-VRIDPETGKVVGWIDLSGL  216 (264)
T ss_dssp             CEEEE---SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE-EEEETTT-BEEEEEE-HHH
T ss_pred             EEEEEC--CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE-EEEeCCCCeEEEEEEhhHh
Confidence            444443  2478999999888877766532  2   245667774 56555544444444 4789999987765521   


Q ss_pred             -------Cc---CceeEEEEEEecCCCcccEEEEEe
Q 019349          221 -------GT---YPSTIFSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       221 -------~~---~~~~v~~l~fs~d~~~~~~l~~~s  246 (342)
                             ..   ...-.+.+|+.|...   .|..++
T Consensus       217 ~~~~~~~~~~~~~~dVLNGIAyd~~~~---~l~vTG  249 (264)
T PF05096_consen  217 RPEVGRDKSRQPDDDVLNGIAYDPETD---RLFVTG  249 (264)
T ss_dssp             HHHHTSTTST--TTS-EEEEEEETTTT---EEEEEE
T ss_pred             hhcccccccccccCCeeEeEeEeCCCC---EEEEEe
Confidence                   00   123489999999877   454444

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.78  E-value=0.0013  Score=61.08  Aligned_cols=93  Identities=16%  Similarity=0.267  Sum_probs=65.5

Q ss_pred             EEEEECCCCceeeE-EeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCE
Q 019349          115 TYIYDANTLAILDT-IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMY  193 (342)
Q Consensus       115 i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~  193 (342)
                      -.+|++...++.+. +..-+-+..+++.+.+|+...++.+.  .||.|.+||...+...  +..+.=..+.++|+|+|..
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC--~DgSiiLyD~~~~~t~--~~ka~~~P~~iaWHp~gai  313 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGC--EDGSIILYDTTRGVTL--LAKAEFIPTLIAWHPDGAI  313 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEe--cCCeEEEEEcCCCeee--eeeecccceEEEEcCCCcE
Confidence            46777765443221 11122334567778888888888877  6999999998766332  2233455789999999999


Q ss_pred             EEEEeCCCcEEEEEEcCCC
Q 019349          194 IATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       194 lat~s~dg~~irlwd~~~~  212 (342)
                      +++|++.|. +.+||+.-.
T Consensus       314 ~~V~s~qGe-lQ~FD~ALs  331 (545)
T PF11768_consen  314 FVVGSEQGE-LQCFDMALS  331 (545)
T ss_pred             EEEEcCCce-EEEEEeecC
Confidence            999999997 589998644

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=97.74  E-value=0.0041  Score=62.33  Aligned_cols=198  Identities=14%  Similarity=0.118  Sum_probs=100.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCC-CC--CCCeEEEEEC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQP-SL--SPRRLCLFNT   82 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~--~d~~i~iwd~   82 (342)
                      .+..|.+++||||+..++..+....-++...+...+.+.+..    .+- ...+..+.+|-|+.. ++  +.++...-+.
T Consensus       108 vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~----~d~-~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~  182 (1265)
T KOG1920|consen  108 VDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLD----ADD-ERKSKFVNVGWGRKETQFRGSEGRQAARQK  182 (1265)
T ss_pred             ccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccc----ccc-ccccccceecccccceeeecchhhhccccc
Confidence            457899999999999998877755444443333333222110    000 000111222222100 00  0011110000


Q ss_pred             CC-CcEEEEEecCCceEEEEEcCCeEEEEE-------C-CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           83 TT-GTALRELNFLTSILAVRLNKKRLVIVL-------R-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        83 ~~-~~~~~~~~~~~~v~~i~~~~~~~~~~~-------d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      .. .+....+...+.=..|.|-.++-+++.       + .+|++||-+ +.+...-.  +....--++++.|.|..+|+.
T Consensus       183 ~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se--~~~~l~~~LsWkPsgs~iA~i  259 (1265)
T KOG1920|consen  183 IEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE--PVEGLQHSLSWKPSGSLIAAI  259 (1265)
T ss_pred             ccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccC--cccccccceeecCCCCeEeee
Confidence            00 000111112223345778766532222       4 689999976 43322211  111223467788888888876


Q ss_pred             CCC-CccEEEEEEcc---CCceeEEEecccCCeeEEEECCCCCEEEE---EeCCCcEEEEEEcCCC
Q 019349          154 AST-TKGSVLVYNVM---ELHSHCEIDAHQAPLAAIVLSSNGMYIAT---ASEQGTIIRVFLVSEA  212 (342)
Q Consensus       154 ~~~-~~g~i~iwd~~---~~~~~~~~~~h~~~v~~i~~s~dg~~lat---~s~dg~~irlwd~~~~  212 (342)
                      ... .++.|.++.-.   .++....++....+|..++|+.++..||+   ..+ +..|++|-+.+-
T Consensus       260 q~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e-~~~v~lwt~~Ny  324 (1265)
T KOG1920|consen  260 QCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLE-NSLVQLWTTGNY  324 (1265)
T ss_pred             eecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCceeeeecccc-cceEEEEEecCe
Confidence            422 35678888843   23333334455566999999999999988   443 344689988664

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.72  E-value=0.039  Score=51.14  Aligned_cols=217  Identities=17%  Similarity=0.238  Sum_probs=110.3

Q ss_pred             EEEEcCCCCEEEEEcCC------------cEEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349           12 FVSFNQDNSGFALSTKD------------GFKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus        12 ~l~fs~d~~~la~g~~~------------g~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      -++.+|.|..+|+..++            .++||+.. |+++-+.  ..+.+..+.|..+...+ ++.       .++.+
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e~Lv-vV~-------~dG~v  103 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDEELV-VVQ-------SDGTV  103 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCCeEE-EEE-------cCCEE
Confidence            35667777777776655            47888855 4443332  22555556665544444 443       37899


Q ss_pred             EEEECCCCcEEEEEecCC-----ce-----EEEEEcCCeEEEEE-CCeEEEEECCC-CceeeEEeCCCCCceEEEE----
Q 019349           78 CLFNTTTGTALRELNFLT-----SI-----LAVRLNKKRLVIVL-REKTYIYDANT-LAILDTIDTVPNLKGLCAF----  141 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~~~~-----~v-----~~i~~~~~~~~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~----  141 (342)
                      +++|+. |+.  .+....     .|     ..+.+.++++++.+ ++.+++.+-.. ....+.+.  ..+......    
T Consensus       104 ~vy~~~-G~~--~fsl~~~i~~~~v~e~~i~~~~~~~~GivvLt~~~~~~~v~n~~~~~~~~~~~--~~p~~~~~~~~~~  178 (410)
T PF04841_consen  104 RVYDLF-GEF--QFSLGEEIEEEKVLECRIFAIWFYKNGIVVLTGNNRFYVVNNIDEPVKLRRLP--EIPGLWTKFHWWP  178 (410)
T ss_pred             EEEeCC-Cce--eechhhhccccCcccccccccccCCCCEEEECCCCeEEEEeCccccchhhccc--cCCCccccccccc
Confidence            999986 333  222211     22     22344556666655 45554443222 11111111  001101000    


Q ss_pred             ------eeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349          142 ------SPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS  215 (342)
Q Consensus       142 ------~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~  215 (342)
                            ....+....+...  .++.+.+.+-...+.   +. ..+++..|++||+|++||--..+|.+ .+.+..-.+.+
T Consensus       179 ~~~~i~~l~~~~~~~i~~~--~g~~i~~i~~~~~~~---i~-~~~~i~~iavSpng~~iAl~t~~g~l-~v~ssDf~~~~  251 (410)
T PF04841_consen  179 SWTVIPLLSSDRVVEILLA--NGETIYIIDENSFKQ---ID-SDGPIIKIAVSPNGKFIALFTDSGNL-WVVSSDFSEKL  251 (410)
T ss_pred             ccccceEeecCcceEEEEe--cCCEEEEEEcccccc---cc-CCCCeEEEEECCCCCEEEEEECCCCE-EEEECccccee
Confidence                  1111111111111  123444333222111   11 23689999999999999999999985 57777666666


Q ss_pred             EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      .++.... ......|.|.-+..    ++..- ...|.+..
T Consensus       252 ~e~~~~~-~~~p~~~~WCG~da----v~l~~-~~~l~lvg  285 (410)
T PF04841_consen  252 CEFDTDS-KSPPKQMAWCGNDA----VVLSW-EDELLLVG  285 (410)
T ss_pred             EEeecCc-CCCCcEEEEECCCc----EEEEe-CCEEEEEC
Confidence            6665432 23456777776654    32222 34555554

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.71  E-value=0.0023  Score=59.41  Aligned_cols=212  Identities=12%  Similarity=0.128  Sum_probs=101.7

Q ss_pred             EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC-eEEEEE-CCeEEEE-ECCCCceee
Q 019349           51 IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK-RLVIVL-REKTYIY-DANTLAILD  127 (342)
Q Consensus        51 ~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~~-d~~i~i~-d~~~~~~~~  127 (342)
                      .+...+++..+++++        ++.-.|+.....+....    +.-..+.|... ..++.. .++|.|+ ++. .+...
T Consensus        37 ~ls~npngr~v~V~g--------~geY~iyt~~~~r~k~~----G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~-~~~~k  103 (443)
T PF04053_consen   37 SLSHNPNGRFVLVCG--------DGEYEIYTALAWRNKAF----GSGLSFVWSSRNRYAVLESSSTIKIYKNFK-NEVVK  103 (443)
T ss_dssp             EEEE-TTSSEEEEEE--------TTEEEEEETTTTEEEEE----EE-SEEEE-TSSEEEEE-TTS-EEEEETTE-E-TT-
T ss_pred             eEEECCCCCEEEEEc--------CCEEEEEEccCCccccc----CceeEEEEecCccEEEEECCCeEEEEEcCc-cccce
Confidence            355666777777765        45777776433332221    23344555544 444444 5689996 442 22223


Q ss_pred             EEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349          128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF  207 (342)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw  207 (342)
                      .+..+.....+..      |..|+..+   ++.|.+||+.+++.++.+...  +|..|.||++|+++|-.+.+..  .+.
T Consensus       104 ~i~~~~~~~~If~------G~LL~~~~---~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~~i--~il  170 (443)
T PF04053_consen  104 SIKLPFSVEKIFG------GNLLGVKS---SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKDSI--YIL  170 (443)
T ss_dssp             ----SS-EEEEE-------SSSEEEEE---TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SE--EEE
T ss_pred             EEcCCcccceEEc------CcEEEEEC---CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCCeE--EEE
Confidence            4443333333433      55666665   357999999999999988743  4899999999999999998863  355


Q ss_pred             EcCCC--------------eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccc
Q 019349          208 LVSEA--------------TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILG  273 (342)
Q Consensus       208 d~~~~--------------~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~  273 (342)
                      +....              ..+.++     ...|.+.+|..| -   ++.+...  .++.+=  .+..        +.  
T Consensus       171 ~~~~~~~~~~~~~g~e~~f~~~~E~-----~~~IkSg~W~~d-~---fiYtT~~--~lkYl~--~Ge~--------~~--  227 (443)
T PF04053_consen  171 KYNLEAVAAIPEEGVEDAFELIHEI-----SERIKSGCWVED-C---FIYTTSN--HLKYLV--NGET--------GI--  227 (443)
T ss_dssp             EE-HHHHHHBTTTB-GGGEEEEEEE------S--SEEEEETT-E---EEEE-TT--EEEEEE--TTEE--------EE--
T ss_pred             EecchhcccccccCchhceEEEEEe-----cceeEEEEEEcC-E---EEEEcCC--eEEEEE--cCCc--------ce--
Confidence            54322              222222     234777788765 4   5555443  555531  1110        00  


Q ss_pred             ccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349          274 SILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                               +-+.+.   ..+.+...++.++|+....|+.+..|.++..+
T Consensus       228 ---------i~~ld~---~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~~  265 (443)
T PF04053_consen  228 ---------IAHLDK---PLYLLGYLPKENRLYLIDRDGNVISYELDLSE  265 (443)
T ss_dssp             ---------EEE-SS-----EEEEEETTTTEEEEE-TT--EEEEE--HHH
T ss_pred             ---------EEEcCC---ceEEEEEEccCCEEEEEECCCCEEEEEECHHH
Confidence                     111110   00111112233789999999999999988754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.62  E-value=0.0019  Score=57.98  Aligned_cols=235  Identities=13%  Similarity=0.088  Sum_probs=143.6

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC--CcEEEEeCCCCcEEEEEeeC-CEEEEEEcCCCC----eEEEEcCCCCCCCCCCeEEE
Q 019349            7 SYPVFFVSFNQDNSGFALSTK--DGFKIFDSSTGRLCYERAVG-AFSIVEMLYSSS----LLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~--~g~~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~----~~~~~~~g~~~~~~d~~i~i   79 (342)
                      -..|.+++.+.||.++.+..+  ..+++||+++..+.--.... --..++|..+.+    .+++..      +.++.+.+
T Consensus        53 L~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~------~~sg~i~V  126 (558)
T KOG0882|consen   53 LGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSL------FKSGKIFV  126 (558)
T ss_pred             HHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeec------ccCCCcEE
Confidence            345778888999998888554  46799998776443111110 011234444433    333333      36789999


Q ss_pred             EECCCCcE-EE-EEe-cCCceEEEEEcCCeEEEEE---CCeEEEEECCC-C-----ceeeEEeC-------CCCCceEEE
Q 019349           80 FNTTTGTA-LR-ELN-FLTSILAVRLNKKRLVIVL---REKTYIYDANT-L-----AILDTIDT-------VPNLKGLCA  140 (342)
Q Consensus        80 wd~~~~~~-~~-~~~-~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~-~-----~~~~~~~~-------~~~~~~~~~  140 (342)
                      +|-..+-+ .. .-. +-++|..+..++-.-.+.+   .|.|.-|.... .     ++...++.       ........+
T Consensus       127 vD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts  206 (558)
T KOG0882|consen  127 VDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS  206 (558)
T ss_pred             ECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence            99654432 22 222 3458999988876655555   47899998862 1     12222211       111223456


Q ss_pred             EeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe--------------------------------cccC-CeeEEEE
Q 019349          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID--------------------------------AHQA-PLAAIVL  187 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~--------------------------------~h~~-~v~~i~~  187 (342)
                      +..+|++..++.-+  .|..|++++.++++.++.+.                                -|.. .-+.+.|
T Consensus       207 ~Efsp~g~qistl~--~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~f  284 (558)
T KOG0882|consen  207 FEFSPDGAQISTLN--PDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVF  284 (558)
T ss_pred             eEEccccCcccccC--cccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEE
Confidence            77778888888877  68999999998886544332                                1111 2345779


Q ss_pred             CCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc----------------Cce-------eEEEEEEecCCCcccEEEE
Q 019349          188 SSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT----------------YPS-------TIFSLSFGQSMQFQDILVA  244 (342)
Q Consensus       188 s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~----------------~~~-------~v~~l~fs~d~~~~~~l~~  244 (342)
                      ...|++|+-|+-=|  |++.++.+++....+-...                +..       .-..+.|-+|-.   ++++
T Consensus       285 des~~flly~t~~g--ikvin~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np~~~~~~dpt---~~c~  359 (558)
T KOG0882|consen  285 DESGNFLLYGTILG--IKVINLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNPLLEFQKDPT---IVCT  359 (558)
T ss_pred             cCCCCEEEeeccee--EEEEEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCcccccCCCCe---EEEe
Confidence            99999999999887  6899999988765542110                000       011233556666   6777


Q ss_pred             EeCCCcEEEE
Q 019349          245 TSSSGSLHVF  254 (342)
Q Consensus       245 ~s~dg~i~vw  254 (342)
                      +=..+.+++|
T Consensus       360 a~kk~rfylf  369 (558)
T KOG0882|consen  360 AFKKNRFYLF  369 (558)
T ss_pred             eeecceEEEE
Confidence            7777788888

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.59  E-value=0.012  Score=56.55  Aligned_cols=178  Identities=11%  Similarity=0.158  Sum_probs=116.1

Q ss_pred             eEEEEEcCCCCEEEEEcCCc-EEEEeCCCC-cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349           10 VFFVSFNQDNSGFALSTKDG-FKIFDSSTG-RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~~~g-~~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~   87 (342)
                      ++|++++  ++.|+-|+-+| +.+++.+-. +..+..   .    .-..++.+++.++.       |++|.|--+-+.+.
T Consensus        42 is~~av~--~~~~~~GtH~g~v~~~~~~~~~~~~~~~---s----~~~~~Gey~asCS~-------DGkv~I~sl~~~~~  105 (846)
T KOG2066|consen   42 ISCCAVH--DKFFALGTHRGAVYLTTCQGNPKTNFDH---S----SSILEGEYVASCSD-------DGKVVIGSLFTDDE  105 (846)
T ss_pred             HHHHHhh--cceeeeccccceEEEEecCCcccccccc---c----ccccCCceEEEecC-------CCcEEEeeccCCcc
Confidence            4445554  35688888887 477775432 111110   0    11456788888875       99999999999999


Q ss_pred             EEEEecCCceEEEEEcCC------eEEEEECCe-EEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349           88 LRELNFLTSILAVRLNKK------RLVIVLREK-TYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (342)
Q Consensus        88 ~~~~~~~~~v~~i~~~~~------~~~~~~d~~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~  160 (342)
                      ..++.+.-++.+|+++|+      +.+++++.. +.++.-+=.+.......+.....+.++++.++  ++|-+.  .+| 
T Consensus       106 ~~~~df~rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~g~--lIAWan--d~G-  180 (846)
T KOG2066|consen  106 ITQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWRGN--LIAWAN--DDG-  180 (846)
T ss_pred             ceeEecCCcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEecCc--EEEEec--CCC-
Confidence            999999999999999998      334444322 66665421111112223344456778888754  899887  355 


Q ss_pred             EEEEEccCCceeEEEecccCCe------eEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 019349          161 VLVYNVMELHSHCEIDAHQAPL------AAIVLSSNGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~~~v------~~i~~s~dg~~lat~s~dg~~irlwd~~~  211 (342)
                      |++||+.+.+.+..++.....+      ..+.|.++ ..|+.|=.| + |++..++.
T Consensus       181 v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~-~~LVIGW~d-~-v~i~~I~~  234 (846)
T KOG2066|consen  181 VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDE-DRLVIGWGD-S-VKICSIKK  234 (846)
T ss_pred             cEEEeccccceeeccCCCCCCCCcccCCCceEecCC-CeEEEecCC-e-EEEEEEec
Confidence            9999999988877775433322      35778765 567777655 3 58888873

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=97.58  E-value=0.00021  Score=69.02  Aligned_cols=167  Identities=14%  Similarity=0.172  Sum_probs=107.6

Q ss_pred             ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCc-E-----------
Q 019349          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT-I-----------  203 (342)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~-~-----------  203 (342)
                      ....+++++.+..+|+.+.  -.|.|+++++.+|.......+|.++|+.|.=+.||.++++.|.-.. +           
T Consensus      1102 ~~fTc~afs~~~~hL~vG~--~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~ 1179 (1516)
T KOG1832|consen 1102 ALFTCIAFSGGTNHLAVGS--HAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGG 1179 (1516)
T ss_pred             cceeeEEeecCCceEEeee--ccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccC
Confidence            4556677777778999887  4799999999999999999999999999999999998887765222 1           


Q ss_pred             ----------------------------EEEEEcCCCeeEEEeccCcC--ceeEEEEEEecCCCcccEEEEEeCCCcEEE
Q 019349          204 ----------------------------IRVFLVSEATKSYSFRRGTY--PSTIFSLSFGQSMQFQDILVATSSSGSLHV  253 (342)
Q Consensus       204 ----------------------------irlwd~~~~~~~~~~~~~~~--~~~v~~l~fs~d~~~~~~l~~~s~dg~i~v  253 (342)
                                                  ..+||++++..+.++-.+..  ...-++..|||+..   +++   .||-  +
T Consensus      1180 ~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~---LIl---ndGv--L 1251 (1516)
T KOG1832|consen 1180 PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDT---LIL---NDGV--L 1251 (1516)
T ss_pred             ccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcc---eEe---eCce--e
Confidence                                        23455555544433211110  11135678999988   554   4553  8


Q ss_pred             EecCCCCCCCCCCCccccc-cccccccc-----cccccccccceeeeccCCCccccEEEEEEeCCcEE
Q 019349          254 FSPGFAINQRRGGRTSSIL-GSILPESV-----NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFV  315 (342)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~  315 (342)
                      ||++.++..+++.+.+-++ |+|.|...     .++|+.-.++.++.....   +..-++..+.|.|.
T Consensus      1252 WDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINSEIwD~RTF~lLh~VP~L---dqc~VtFNstG~Vm 1316 (1516)
T KOG1832|consen 1252 WDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINSEIWDMRTFKLLHSVPSL---DQCAVTFNSTGDVM 1316 (1516)
T ss_pred             eeeccHHHHhhhhhheecccccccCCCceEEeechhhhhHHHHHHhcCccc---cceEEEeccCccch
Confidence            9999887766665555433 34566543     468888765544322111   13345555556554

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.52  E-value=0.052  Score=47.28  Aligned_cols=193  Identities=13%  Similarity=0.110  Sum_probs=116.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEE---------------E-eeCCEEEEE--EcCCCCeEEEEcCCCCC
Q 019349            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYE---------------R-AVGAFSIVE--MLYSSSLLAIVGAGEQP   70 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~---------------~-~~~~~~~~~--~~~~~~~~~~~~~g~~~   70 (342)
                      +|..+..-|+-+.|++=++..+.+|+++.......               . ...++...+  -.......+++..    
T Consensus        37 ~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~----  112 (275)
T PF00780_consen   37 SITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV----  112 (275)
T ss_pred             eEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE----
Confidence            48899999988887777777789999765533221               1 112333333  1122233333332    


Q ss_pred             CCCCCeEEEEECCCC-----cEEEEEecCCceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCCCC----------C
Q 019349           71 SLSPRRLCLFNTTTG-----TALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPN----------L  135 (342)
Q Consensus        71 ~~~d~~i~iwd~~~~-----~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----------~  135 (342)
                         .++|.+|.....     +...++..+..+.++.|.++.++++..+...+.|+.++....-+.....          .
T Consensus       113 ---kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~~~~i~v~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~  189 (275)
T PF00780_consen  113 ---KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFLGNKICVGTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS  189 (275)
T ss_pred             ---CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEeCCEEEEEeCCceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence               568888887542     5677888899999999999999999988999999997654433321111          1


Q ss_pred             ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeE--EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe
Q 019349          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC--EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  213 (342)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~--~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~  213 (342)
                      ..+..+... ++.+|++-.    . +-++=-..|++.+  .++-. ..+.++++.  ..+|+.-+.++  |.||++.+++
T Consensus       190 ~~~~~~~~~-~~e~Ll~~~----~-~g~fv~~~G~~~r~~~i~W~-~~p~~~~~~--~pyli~~~~~~--iEV~~~~~~~  258 (275)
T PF00780_consen  190 KPLGIFQLS-DNEFLLCYD----N-IGVFVNKNGEPSRKSTIQWS-SAPQSVAYS--SPYLIAFSSNS--IEVRSLETGE  258 (275)
T ss_pred             CceEEEEeC-CceEEEEec----c-eEEEEcCCCCcCcccEEEcC-CchhEEEEE--CCEEEEECCCE--EEEEECcCCc
Confidence            122233332 234544322    2 2232223444332  33332 245566664  35787777654  6899999999


Q ss_pred             eEEEec
Q 019349          214 KSYSFR  219 (342)
Q Consensus       214 ~~~~~~  219 (342)
                      .++.+.
T Consensus       259 lvQ~i~  264 (275)
T PF00780_consen  259 LVQTIP  264 (275)
T ss_pred             EEEEEE
Confidence            888774

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.48  E-value=0.0007  Score=63.12  Aligned_cols=93  Identities=16%  Similarity=0.198  Sum_probs=73.3

Q ss_pred             eEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCee-EEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349          137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLA-AIVLSSNGMYIATASEQGTIIRVFLVSEATKS  215 (342)
Q Consensus       137 ~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~-~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~  215 (342)
                      .+.-+-++|....+|+..  .+|.|.+..+. -+.+.+++-|..+++ +++|.|||++||.|-.||+ |++.|+.+|..+
T Consensus        22 ~i~~~ewnP~~dLiA~~t--~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~-I~L~Dve~~~~l   97 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRT--EKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGT-IRLHDVEKGGRL   97 (665)
T ss_pred             ceEEEEEcCccchhheec--cCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCe-EEEEEccCCCce
Confidence            445556667666888876  68999999988 778888887888888 9999999999999999998 589999999888


Q ss_pred             EEeccCcCceeEEEEEEec
Q 019349          216 YSFRRGTYPSTIFSLSFGQ  234 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~  234 (342)
                      ..+.. .....|.++-|++
T Consensus        98 ~~~~~-s~e~~is~~~w~~  115 (665)
T KOG4640|consen   98 VSFLF-SVETDISKGIWDR  115 (665)
T ss_pred             ecccc-ccccchheeeccc
Confidence            76422 2234577777763

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.40  E-value=0.082  Score=46.78  Aligned_cols=180  Identities=12%  Similarity=0.068  Sum_probs=100.1

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCceEE-EEEcCCeEEEEECCeEEEEECCCCceeeEEeCCCC---CceEEEEeeCCCcc
Q 019349           73 SPRRLCLFNTTTGTALRELNFLTSILA-VRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPN---LKGLCAFSPSLNAC  148 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~~v~~-i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  148 (342)
                      ..+.|.-||..+++. ..+..++.+.+ ...+..+.+++.+..++++++.++.....+.....   .........++++.
T Consensus        45 ~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~Lv~~~~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~  123 (307)
T COG3386          45 LGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGRLIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR  123 (307)
T ss_pred             CCCeEEEecCCcCce-EEEECCCCcccceeecCCCeEEEEccccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC
Confidence            367888898876653 34444554443 44577788888888888899866655333321111   01111222344555


Q ss_pred             EEEEeCC---------CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC--Cee---
Q 019349          149 FLAVPAS---------TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE--ATK---  214 (342)
Q Consensus       149 ~l~~~~~---------~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~--~~~---  214 (342)
                      +.+..-.         ...|.|.-+|. .+..+..+..|-..-+.|+|||||+.|..+-.....|.-|++..  +..   
T Consensus       124 ~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~  202 (307)
T COG3386         124 IWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR  202 (307)
T ss_pred             EEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc
Confidence            5443321         12343444443 45555556666666789999999988888876644344555531  211   


Q ss_pred             EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC-cEEEEecC
Q 019349          215 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG-SLHVFSPG  257 (342)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg-~i~vwd~~  257 (342)
                      ...+.....++..-.++...+|.   +.+++-..| .|.+|+.+
T Consensus       203 ~~~~~~~~~~G~PDG~~vDadG~---lw~~a~~~g~~v~~~~pd  243 (307)
T COG3386         203 RGFVDFDEEPGLPDGMAVDADGN---LWVAAVWGGGRVVRFNPD  243 (307)
T ss_pred             ceEEEccCCCCCCCceEEeCCCC---EEEecccCCceEEEECCC
Confidence            10111111223345577777887   554444444 89999876

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.38  E-value=0.15  Score=49.02  Aligned_cols=188  Identities=16%  Similarity=0.108  Sum_probs=107.0

Q ss_pred             CEEEEEcCCc-EEEEeCCCCcEEEEEeeCC---EEEE-E-------EcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349           20 SGFALSTKDG-FKIFDSSTGRLCYERAVGA---FSIV-E-------MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (342)
Q Consensus        20 ~~la~g~~~g-~~v~d~~~~~~~~~~~~~~---~~~~-~-------~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~   87 (342)
                      ..|.+++.++ +.-+|..+|+++.+.....   .... .       .....+.+.+.+       .++.|.-.|.++|+.
T Consensus        70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-------~dg~l~ALDa~TGk~  142 (527)
T TIGR03075        70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-------LDARLVALDAKTGKV  142 (527)
T ss_pred             CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-------CCCEEEEEECCCCCE
Confidence            3455555444 5677888998876543211   1100 0       011123333333       378999999999999


Q ss_pred             EEEEecCC-----ceEE-EEEcCCeEEEEE-------CCeEEEEECCCCceeeEEeCCCCCce-----------------
Q 019349           88 LRELNFLT-----SILA-VRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLKG-----------------  137 (342)
Q Consensus        88 ~~~~~~~~-----~v~~-i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~-----------------  137 (342)
                      +.+.....     .+.+ -.+..+.+++..       ++.|+-+|.++++.+..+.+......                 
T Consensus       143 ~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t  222 (527)
T TIGR03075       143 VWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT  222 (527)
T ss_pred             EeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence            88765421     1111 122345555543       46899999999998877654322100                 


Q ss_pred             ------------E-EEEeeCCCccEEEEeCCC----------C----ccEEEEEEccCCceeEEEec--cc-------CC
Q 019349          138 ------------L-CAFSPSLNACFLAVPAST----------T----KGSVLVYNVMELHSHCEIDA--HQ-------AP  181 (342)
Q Consensus       138 ------------~-~~~~~~~~~~~l~~~~~~----------~----~g~i~iwd~~~~~~~~~~~~--h~-------~~  181 (342)
                                  + ..++.+++..++..+...          .    ...|.-.|+++++..-.++.  |.       .+
T Consensus       223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~  302 (527)
T TIGR03075       223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE  302 (527)
T ss_pred             CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence                        0 122444443344333210          0    12677789999998766653  21       12


Q ss_pred             eeEEEECCCCC---EEEEEeCCCcEEEEEEcCCCeeE
Q 019349          182 LAAIVLSSNGM---YIATASEQGTIIRVFLVSEATKS  215 (342)
Q Consensus       182 v~~i~~s~dg~---~lat~s~dg~~irlwd~~~~~~~  215 (342)
                      ..-+.+..+|+   .++.+..+|.+ .+.|-.+|+.+
T Consensus       303 p~l~d~~~~G~~~~~v~~~~K~G~~-~vlDr~tG~~i  338 (527)
T TIGR03075       303 MILFDLKKDGKPRKLLAHADRNGFF-YVLDRTNGKLL  338 (527)
T ss_pred             cEEEEeccCCcEEEEEEEeCCCceE-EEEECCCCcee
Confidence            22334445776   78889999974 69999999886

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.35  E-value=0.035  Score=49.45  Aligned_cols=240  Identities=9%  Similarity=0.046  Sum_probs=120.5

Q ss_pred             CCCCCeEEEEEcCCCC-EEEEEc-CCcEEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNS-GFALST-KDGFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~-~la~g~-~~g~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .+...|+.++|||... +|..++ ++.++|.|+++......... ..+-..+|..+....+.+|.      ..+.|.++|
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl------~nG~VlvyD  264 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGL------QNGMVLVYD  264 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEec------cCceEEEEE
Confidence            4456799999999887 454444 55689999988755433222 45556677777777777776      589999999


Q ss_pred             CCCCcEE-EEEec---CCceEEEEE-------cCCeEEEEECCeEEEEECCC--CceeeEEeCCCCCceEEEEeeCCCcc
Q 019349           82 TTTGTAL-RELNF---LTSILAVRL-------NKKRLVIVLREKTYIYDANT--LAILDTIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        82 ~~~~~~~-~~~~~---~~~v~~i~~-------~~~~~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
                      ++..+-. .++..   ..+|..++.       .-.+++++.--....|++.-  .......+. ..+.....+...+-..
T Consensus       265 ~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~l~f~ei~~s~~~~p~vlel-e~pG~cismqy~~~sn  343 (463)
T KOG1645|consen  265 MRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTVLQFYEIVFSAECLPCVLEL-EPPGICISMQYHGVSN  343 (463)
T ss_pred             ccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehhhhhhhhhccccCCCccccc-CCCcceeeeeecCccc
Confidence            9865432 12211   124444332       22344444433444555421  111111111 1122222333333222


Q ss_pred             EEEEeCCCC-----ccEEEE-EEccCCceeEEE-eccc-C------CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee
Q 019349          149 FLAVPASTT-----KGSVLV-YNVMELHSHCEI-DAHQ-A------PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK  214 (342)
Q Consensus       149 ~l~~~~~~~-----~g~i~i-wd~~~~~~~~~~-~~h~-~------~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~  214 (342)
                      .+...-+..     -..|-. -|-..|.++..- ..|. +      .=..+.=.++.++|+.-+.+.+-+.+||..+++.
T Consensus       344 h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~ev  423 (463)
T KOG1645|consen  344 HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEV  423 (463)
T ss_pred             eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhhe
Confidence            222111100     000111 122223222111 1110 0      0112222356666665555544467999999999


Q ss_pred             EEEeccCcCceeEEEEEEecC-CCcccEEEEEeCCCcEEEEecC
Q 019349          215 SYSFRRGTYPSTIFSLSFGQS-MQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~d-~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      ++++..   ..+|.+++...- +.  ++|++=. |..++||..+
T Consensus       424 vQ~l~~---~epv~Dicp~~~n~~--syLa~LT-d~~v~Iyk~e  461 (463)
T KOG1645|consen  424 VQTLAL---SEPVLDICPNDTNGS--SYLALLT-DDRVHIYKNE  461 (463)
T ss_pred             eeeccc---CcceeecceeecCCc--chhhhee-cceEEEEecC
Confidence            988853   245777765443 32  3565544 5688998654

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.26  E-value=0.027  Score=52.29  Aligned_cols=155  Identities=15%  Similarity=0.101  Sum_probs=90.9

Q ss_pred             CeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE--CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349           75 RRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
                      ..+.++|+.+++......+...-..-.|+|++  ++++.  ++  .|+++|+...+..+ +........  .=+++|++.
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~--~Ps~spdG~  294 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFGINT--SPSWSPDGS  294 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee-cccCCcccc--CccCCCCCC
Confidence            46899999998877666666655556677754  44444  44  78889998776333 322222111  335677888


Q ss_pred             EEEEeCCCCccE--EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC-Cc-EEEEEEcCCCeeEEEeccCcCc
Q 019349          149 FLAVPASTTKGS--VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ-GT-IIRVFLVSEATKSYSFRRGTYP  224 (342)
Q Consensus       149 ~l~~~~~~~~g~--i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d-g~-~irlwd~~~~~~~~~~~~~~~~  224 (342)
                      .+++.+. ..|.  |.++|....+. ..+......=..-.+||||++|+..+.. |. .|-+.|+.++..+..+...   
T Consensus       295 ~ivf~Sd-r~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~---  369 (425)
T COG0823         295 KIVFTSD-RGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTST---  369 (425)
T ss_pred             EEEEEeC-CCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEcccc---
Confidence            8888764 4565  45555555543 3333222222256799999999988753 32 1346666666543333211   


Q ss_pred             eeEEEEEEecCCC
Q 019349          225 STIFSLSFGQSMQ  237 (342)
Q Consensus       225 ~~v~~l~fs~d~~  237 (342)
                      .....-.|.++++
T Consensus       370 ~~~e~ps~~~ng~  382 (425)
T COG0823         370 YLNESPSWAPNGR  382 (425)
T ss_pred             ccCCCCCcCCCCc
Confidence            1123446677776

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.25  E-value=0.15  Score=49.87  Aligned_cols=191  Identities=17%  Similarity=0.158  Sum_probs=103.0

Q ss_pred             EEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE-EEEe-cCCc-eEEEEEcCCe--EEEEE-C-C----eEEEE
Q 019349           50 SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL-RELN-FLTS-ILAVRLNKKR--LVIVL-R-E----KTYIY  118 (342)
Q Consensus        50 ~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~-~~~~-~~~~-v~~i~~~~~~--~~~~~-d-~----~i~i~  118 (342)
                      .+..+..+...+++.+       .++.|.+.|  ++... ..+. ++.. |.-+....+.  ++... | +    .++||
T Consensus        27 ~isc~~s~~~~vvigt-------~~G~V~~Ln--~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw   97 (933)
T KOG2114|consen   27 AISCCSSSTGSVVIGT-------ADGRVVILN--SSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIW   97 (933)
T ss_pred             ceeEEcCCCceEEEee-------ccccEEEec--ccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEe
Confidence            3344444445555544       367666655  33322 4433 2334 4444444442  22222 3 2    58999


Q ss_pred             ECCC------CceeeE--EeC---CCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc----CCceeEEEecccCCee
Q 019349          119 DANT------LAILDT--IDT---VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM----ELHSHCEIDAHQAPLA  183 (342)
Q Consensus       119 d~~~------~~~~~~--~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~----~~~~~~~~~~h~~~v~  183 (342)
                      +++.      ++++..  +-+   +.++....+++.+.+-..+|++ . .+|.|..+.-.    .+........-..||+
T Consensus        98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~G-f-~nG~V~~~~GDi~RDrgsr~~~~~~~~~pIT  175 (933)
T KOG2114|consen   98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCG-F-TNGLVICYKGDILRDRGSRQDYSHRGKEPIT  175 (933)
T ss_pred             cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEE-e-cCcEEEEEcCcchhccccceeeeccCCCCce
Confidence            9953      334422  222   2233445555555555566655 4 68999998532    1222222223457999


Q ss_pred             EEEECCCCCE-EEEEeCCCcEEEEEEcCCCee-EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          184 AIVLSSNGMY-IATASEQGTIIRVFLVSEATK-SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       184 ~i~~s~dg~~-lat~s~dg~~irlwd~~~~~~-~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      .+++..++.. +..+... . |.+|.+....+ ...+.  .+...+.|-+|++...   .|++++. .-+.+|+.+..
T Consensus       176 gL~~~~d~~s~lFv~Tt~-~-V~~y~l~gr~p~~~~ld--~~G~~lnCss~~~~t~---qfIca~~-e~l~fY~sd~~  245 (933)
T KOG2114|consen  176 GLALRSDGKSVLFVATTE-Q-VMLYSLSGRTPSLKVLD--NNGISLNCSSFSDGTY---QFICAGS-EFLYFYDSDGR  245 (933)
T ss_pred             eeEEecCCceeEEEEecc-e-eEEEEecCCCcceeeec--cCCccceeeecCCCCc---cEEEecC-ceEEEEcCCCc
Confidence            9999999887 3333333 4 47999873332 22232  2345688889987654   3555443 46999987643

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.20  E-value=0.0021  Score=62.06  Aligned_cols=92  Identities=15%  Similarity=0.172  Sum_probs=69.6

Q ss_pred             CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCC
Q 019349          112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG  191 (342)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg  191 (342)
                      .|.|-||- .+|++.+.+.-   |....+++++|....||.+=  .-|.+.+|...+.+.-.....|..+|.-+.|||+|
T Consensus        40 ~GSVtIfa-dtGEPqr~Vt~---P~hatSLCWHpe~~vLa~gw--e~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G  113 (1416)
T KOG3617|consen   40 GGSVTIFA-DTGEPQRDVTY---PVHATSLCWHPEEFVLAQGW--EMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDG  113 (1416)
T ss_pred             CceEEEEe-cCCCCCccccc---ceehhhhccChHHHHHhhcc--ccceeEEEecCCceeeeeccCCCCCceeEEecCCC
Confidence            56777773 34544444332   33355688999887777654  57999999988876665666799999999999999


Q ss_pred             CEEEEEeCCCcEEEEEEcC
Q 019349          192 MYIATASEQGTIIRVFLVS  210 (342)
Q Consensus       192 ~~lat~s~dg~~irlwd~~  210 (342)
                      +.|+|+..-|. +.+|...
T Consensus       114 ~~l~t~d~~g~-v~lwr~d  131 (1416)
T KOG3617|consen  114 TVLMTLDNPGS-VHLWRYD  131 (1416)
T ss_pred             CeEEEcCCCce-eEEEEee
Confidence            99999999886 4799875

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.19  E-value=0.0018  Score=64.07  Aligned_cols=102  Identities=14%  Similarity=0.222  Sum_probs=70.3

Q ss_pred             cEEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCcee
Q 019349          148 CFLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST  226 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~  226 (342)
                      ..++++.  ..|.|-..|+... .+...-+.-.++|++++|+.||+.++.|-.+|. |.+||+..++.+..+..+.++..
T Consensus       100 ~~ivi~T--s~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~-V~v~D~~~~k~l~~i~e~~ap~t  176 (1206)
T KOG2079|consen  100 VPIVIGT--SHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGH-VTVWDMHRAKILKVITEHGAPVT  176 (1206)
T ss_pred             eeEEEEc--CchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCc-EEEEEccCCcceeeeeecCCccc
Confidence            3566665  4688888887653 222222233579999999999999999999997 58999999988887765443322


Q ss_pred             -EEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          227 -IFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       227 -v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                       |..+.+..++.   .+.++...|.  +|.+.
T Consensus       177 ~vi~v~~t~~nS---~llt~D~~Gs--f~~lv  203 (1206)
T KOG2079|consen  177 GVIFVGRTSQNS---KLLTSDTGGS--FWKLV  203 (1206)
T ss_pred             eEEEEEEeCCCc---EEEEccCCCc--eEEEE
Confidence             33344445555   6888888887  66653

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.16  E-value=0.21  Score=46.40  Aligned_cols=168  Identities=16%  Similarity=0.190  Sum_probs=86.0

Q ss_pred             eEEEEECCCCcEEEEEecC-CceEEEEEcCC-eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceE-----EEEeeCCCc
Q 019349           76 RLCLFNTTTGTALRELNFL-TSILAVRLNKK-RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL-----CAFSPSLNA  147 (342)
Q Consensus        76 ~i~iwd~~~~~~~~~~~~~-~~v~~i~~~~~-~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~  147 (342)
                      .|++|+. .|+.+.++... +.+.++.|+.+ .+++.. +|.+++||+.... ...+........+     .......+|
T Consensus        62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~e~LvvV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDDEELVVVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECC-CCCEeEEEEECCCCEEEEEECCCCeEEEEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccCCCC
Confidence            6999986 57778877654 58999999765 444444 8999999986333 1111111111111     111122233


Q ss_pred             cEEEEeCCCCccEEEEEEccCCc-eeEE---Eec-----ccCCe-eE-EEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE
Q 019349          148 CFLAVPASTTKGSVLVYNVMELH-SHCE---IDA-----HQAPL-AA-IVLSSNGMYIATASEQGTIIRVFLVSEATKSY  216 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~~~-~~~~---~~~-----h~~~v-~~-i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~  216 (342)
                       .++..+   ++.+.+.+-.... ....   +..     |..+. .. ..++.+....+....++. +.+.+-...+.  
T Consensus       140 -ivvLt~---~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~-i~~i~~~~~~~--  212 (410)
T PF04841_consen  140 -IVVLTG---NNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGET-IYIIDENSFKQ--  212 (410)
T ss_pred             -EEEECC---CCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCE-EEEEEcccccc--
Confidence             222222   3444443221111 1111   111     11111 11 234555555555544443 33333222111  


Q ss_pred             EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          217 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                       +.   ..+++..|++||+++   ++|.-..+|.+.|.+.+-.
T Consensus       213 -i~---~~~~i~~iavSpng~---~iAl~t~~g~l~v~ssDf~  248 (410)
T PF04841_consen  213 -ID---SDGPIIKIAVSPNGK---FIALFTDSGNLWVVSSDFS  248 (410)
T ss_pred             -cc---CCCCeEEEEECCCCC---EEEEEECCCCEEEEECccc
Confidence             11   124699999999999   9999999999999875443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>smart00320 WD40 WD40 repeats

Probab=97.13  E-value=0.0017  Score=36.64  Aligned_cols=29  Identities=17%  Similarity=0.438  Sum_probs=26.1

Q ss_pred             ceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      ...|.++.|++++.   ++++++.|+.+++|+
T Consensus        12 ~~~i~~~~~~~~~~---~~~~~~~d~~~~~~~   40 (40)
T smart00320       12 TGPVTSVAFSPDGK---YLASASDDGTIKLWD   40 (40)
T ss_pred             CCceeEEEECCCCC---EEEEecCCCeEEEcC
Confidence            44699999999988   999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.0039  Score=58.35  Aligned_cols=77  Identities=13%  Similarity=0.165  Sum_probs=62.6

Q ss_pred             CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEE-EEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          180 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF-SLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       180 ~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~-~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      ..|.-+.|+|.-.++|++.++|.++ +..+. -+.+..+..+  ..+++ +++|.|||+   +||+|-.||+|++-|+++
T Consensus        21 ~~i~~~ewnP~~dLiA~~t~~gell-i~R~n-~qRlwtip~p--~~~v~~sL~W~~DGk---llaVg~kdG~I~L~Dve~   93 (665)
T KOG4640|consen   21 INIKRIEWNPKMDLIATRTEKGELL-IHRLN-WQRLWTIPIP--GENVTASLCWRPDGK---LLAVGFKDGTIRLHDVEK   93 (665)
T ss_pred             cceEEEEEcCccchhheeccCCcEE-EEEec-cceeEeccCC--CCccceeeeecCCCC---EEEEEecCCeEEEEEccC
Confidence            3467788999999999999999865 77776 7777887632  22344 999999999   999999999999999998


Q ss_pred             CCCCC
Q 019349          259 AINQR  263 (342)
Q Consensus       259 ~~~~~  263 (342)
                      +....
T Consensus        94 ~~~l~   98 (665)
T KOG4640|consen   94 GGRLV   98 (665)
T ss_pred             CCcee
Confidence            76543

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.07  E-value=0.0048  Score=58.45  Aligned_cols=115  Identities=16%  Similarity=0.176  Sum_probs=82.0

Q ss_pred             ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCcee-EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee
Q 019349          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH-CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK  214 (342)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~-~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~  214 (342)
                      ....|++..  ..+++.+.  ..|.+.+|+-..++.. ....+-.+.+..+.+|++..++|.|+..|.+ -++-+..+..
T Consensus        36 v~lTc~dst--~~~l~~Gs--S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V-~v~ql~~~~p  110 (726)
T KOG3621|consen   36 VKLTCVDAT--EEYLAMGS--SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRV-SVFQLNKELP  110 (726)
T ss_pred             EEEEEeecC--CceEEEec--ccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceE-EeehhhccCC
Confidence            344555544  55888887  4699999997776543 2333344566777889998888988888875 5887766432


Q ss_pred             E--EEeccC--cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          215 S--YSFRRG--TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       215 ~--~~~~~~--~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      -  .-+...  .+...|++++|++|+.   .|.+|...|+|..-.++.
T Consensus       111 ~~~~~~t~~d~~~~~rVTal~Ws~~~~---k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  111 RDLDYVTPCDKSHKCRVTALEWSKNGM---KLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             CcceeeccccccCCceEEEEEeccccc---EEeecCCCceEEEEEech
Confidence            1  111111  2356799999999999   999999999999998877

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.04  E-value=0.26  Score=45.32  Aligned_cols=222  Identities=12%  Similarity=0.110  Sum_probs=137.9

Q ss_pred             eEEEEEcCCCCEEEEEc--CCcEEEEeCCCCcEEEEEeeCC-EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349           10 VFFVSFNQDNSGFALST--KDGFKIFDSSTGRLCYERAVGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~--~~g~~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      -..++++++++.+.+..  .+.+.+.|..+.+.......+. -.-+.+.++.+.+.+...+.    .++++-+.|..+++
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~----~~~~vsvid~~t~~  151 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGN----GNNTVSVIDAATNK  151 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEeccc----CCceEEEEeCCCCe
Confidence            45788999998665544  4668999977766655544332 22345556665665554421    26899999999999


Q ss_pred             EEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEECCCCceee-E----EeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           87 ALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILD-T----IDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        87 ~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      .+.+......-..+++.++.  ++++.  ++.+.+.|.......+ .    +.....+ ....+.+++...+++.... .
T Consensus       152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P-~~i~v~~~g~~~yV~~~~~-~  229 (381)
T COG3391         152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGP-AGIAVDPDGNRVYVANDGS-G  229 (381)
T ss_pred             EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCC-ceEEECCCCCEEEEEeccC-C
Confidence            88885443333788887765  44444  6799999987765553 1    2222222 2334444444444443332 2


Q ss_pred             ccEEEEEEccCCceeEE-EecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC-ceeEEEEEEecC
Q 019349          158 KGSVLVYNVMELHSHCE-IDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY-PSTIFSLSFGQS  235 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~-~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~-~~~v~~l~fs~d  235 (342)
                      ++.+...|..++..... ...-......+.++|+|+.+......+..+.+.|..+......+..+.. ...+..+++.+.
T Consensus       230 ~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~  309 (381)
T COG3391         230 SNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPL  309 (381)
T ss_pred             CceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceee
Confidence            47899999998876654 2221114566889999999998855533457999988887776654432 122566677665


Q ss_pred             CC
Q 019349          236 MQ  237 (342)
Q Consensus       236 ~~  237 (342)
                      ..
T Consensus       310 ~~  311 (381)
T COG3391         310 YD  311 (381)
T ss_pred             cc
Confidence            43

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.02  E-value=0.26  Score=45.24  Aligned_cols=178  Identities=12%  Similarity=0.091  Sum_probs=119.8

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCceEEEEEcCC--eEEEEE----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC
Q 019349           73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKK--RLVIVL----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN  146 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (342)
                      .++.|.+.|..+.+.............+.++++  .++++.    ++++.+.|-.+.+...+......+   ..++.+|+
T Consensus        94 ~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P---~~~a~~p~  170 (381)
T COG3391          94 DSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP---TGVAVDPD  170 (381)
T ss_pred             CCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc---ceEEECCC
Confidence            368999999888888887776656667777665  455544    368888888888888776554444   44556666


Q ss_pred             ccEEEEeCCCCccEEEEEEccCCceeE-----EEecccCCeeEEEECCCCCEEEEEeCC---CcEEEEEEcCCCeeEEE-
Q 019349          147 ACFLAVPASTTKGSVLVYNVMELHSHC-----EIDAHQAPLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEATKSYS-  217 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~~~~~-----~~~~h~~~v~~i~~s~dg~~lat~s~d---g~~irlwd~~~~~~~~~-  217 (342)
                      +..+..+.. .++.|.+.|........     .+..+. .-..+.++|+|+++...-..   ++ +...|..++..... 
T Consensus       171 g~~vyv~~~-~~~~v~vi~~~~~~v~~~~~~~~~~~~~-~P~~i~v~~~g~~~yV~~~~~~~~~-v~~id~~~~~v~~~~  247 (381)
T COG3391         171 GNKVYVTNS-DDNTVSVIDTSGNSVVRGSVGSLVGVGT-GPAGIAVDPDGNRVYVANDGSGSNN-VLKIDTATGNVTATD  247 (381)
T ss_pred             CCeEEEEec-CCCeEEEEeCCCcceeccccccccccCC-CCceEEECCCCCEEEEEeccCCCce-EEEEeCCCceEEEec
Confidence            665555554 58999999977655442     122222 23568899999977666544   35 46889888876654 


Q ss_pred             eccCcCceeEEEEEEecCCCcccEEEEE-eCCCcEEEEecCCCCC
Q 019349          218 FRRGTYPSTIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPGFAIN  261 (342)
Q Consensus       218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~-s~dg~i~vwd~~~~~~  261 (342)
                      ...+ .. ....++++|+++   ++.+. +..+++.+-|..+...
T Consensus       248 ~~~~-~~-~~~~v~~~p~g~---~~yv~~~~~~~V~vid~~~~~v  287 (381)
T COG3391         248 LPVG-SG-APRGVAVDPAGK---AAYVANSQGGTVSVIDGATDRV  287 (381)
T ss_pred             cccc-cC-CCCceeECCCCC---EEEEEecCCCeEEEEeCCCCce
Confidence            2222 11 245688999998   66666 4458899999877553

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.01  E-value=0.085  Score=44.52  Aligned_cols=139  Identities=11%  Similarity=0.116  Sum_probs=87.4

Q ss_pred             CCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEE-cCCeEEEEE-CCeEEEEECCCCceeeEEeCCC
Q 019349           56 YSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKRLVIVL-REKTYIYDANTLAILDTIDTVP  133 (342)
Q Consensus        56 ~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~  133 (342)
                      .+.+.+++++.      ..+.++-.|.++|..+.+......+.+-+. -.|..++.. .+.+++.+++++.....+....
T Consensus        20 ~dskT~v~igS------Hs~~~~avd~~sG~~~We~ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~   93 (354)
T KOG4649|consen   20 NDSKTLVVIGS------HSGIVIAVDPQSGNLIWEAILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILE   93 (354)
T ss_pred             cCCceEEEEec------CCceEEEecCCCCcEEeehhhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeeehh
Confidence            34455555554      578889999999998887766665544332 345544444 8899999999998777775544


Q ss_pred             CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEE
Q 019349          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTII  204 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~i  204 (342)
                      ....-..+.  +++..+.+ ++ .|++....|.++..++...+...+...+=++.|-...|..+...|.++
T Consensus        94 ~vk~~a~~d--~~~glIyc-gs-hd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vl  160 (354)
T KOG4649|consen   94 TVKVRAQCD--FDGGLIYC-GS-HDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVL  160 (354)
T ss_pred             hhccceEEc--CCCceEEE-ec-CCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEE
Confidence            322222233  34445544 44 699999999999988877765444333444556223344445556554

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.91  E-value=0.13  Score=47.27  Aligned_cols=185  Identities=17%  Similarity=0.198  Sum_probs=96.7

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCC----------EEEEEE---cCC----CCeEEEEcCCC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA----------FSIVEM---LYS----SSLLAIVGAGE   68 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~----------~~~~~~---~~~----~~~~~~~~~g~   68 (342)
                      .++|++++.| |=-++|+|.++| +.|.|+....+++..+...          +..+++   ...    +...+++|.  
T Consensus        86 ~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vGT--  162 (395)
T PF08596_consen   86 QGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVGT--  162 (395)
T ss_dssp             S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEEE--
T ss_pred             CCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEEe--
Confidence            5789999987 556899999988 6999998778888754332          222222   111    135566666  


Q ss_pred             CCCCCCCeEEEEECC--C-CcEE----EEE-ecCCceEEEEE-cC-----------------------CeEEEEECCeEE
Q 019349           69 QPSLSPRRLCLFNTT--T-GTAL----REL-NFLTSILAVRL-NK-----------------------KRLVIVLREKTY  116 (342)
Q Consensus        69 ~~~~~d~~i~iwd~~--~-~~~~----~~~-~~~~~v~~i~~-~~-----------------------~~~~~~~d~~i~  116 (342)
                          +.+.+.+|.+.  . +...    ... ...++|..|.. +.                       ..++++++..++
T Consensus       163 ----n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ir  238 (395)
T PF08596_consen  163 ----NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIR  238 (395)
T ss_dssp             ----TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEE
T ss_pred             ----CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceE
Confidence                46888888764  1 2211    111 23445555542 11                       144556689999


Q ss_pred             EEECCCCceeeEEeCCCCCceEEEEee---CCCccEEEEeCCCCccEEEEEEccCCceeEEEeccc----CCeeEEEECC
Q 019349          117 IYDANTLAILDTIDTVPNLKGLCAFSP---SLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ----APLAAIVLSS  189 (342)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~----~~v~~i~~s~  189 (342)
                      ++...+.+..++.....-....+++.+   ...+..|++-.  .+|.|+++.+-..+.+..++.+.    ..+....|++
T Consensus       239 v~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~--~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~  316 (395)
T PF08596_consen  239 VFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF--NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISR  316 (395)
T ss_dssp             EE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE--TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-T
T ss_pred             EEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE--CCCcEEEEECCCchHhhcccCCCccccccccccEECC
Confidence            999988776655432111111222321   12334454444  58999999999988887766432    2344566777


Q ss_pred             CCCEEEEEeCC
Q 019349          190 NGMYIATASEQ  200 (342)
Q Consensus       190 dg~~lat~s~d  200 (342)
                      +|..++-.|..
T Consensus       317 ~Gdi~~~~gps  327 (395)
T PF08596_consen  317 NGDIFYWTGPS  327 (395)
T ss_dssp             TS-EEEE-SSS
T ss_pred             CCCEEEEeCcc
Confidence            77766655543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.90  E-value=0.23  Score=42.52  Aligned_cols=156  Identities=11%  Similarity=0.125  Sum_probs=88.5

Q ss_pred             CceEEEEEcCC--eEEEEEC--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc
Q 019349           95 TSILAVRLNKK--RLVIVLR--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (342)
Q Consensus        95 ~~v~~i~~~~~--~~~~~~d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~  170 (342)
                      ..+.+++++++  .++++.|  +.|..++. +++.++.+.... ....-++..-+++.+++...  .++.+.++++....
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~E--r~~~L~~~~~~~~~   97 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDG-FGDYEGITYLGNGRYVLSEE--RDQRLYIFTIDDDT   97 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS--SSEEEEEE-STTEEEEEET--TTTEEEEEEE----
T ss_pred             CCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCC-CCCceeEEEECCCEEEEEEc--CCCcEEEEEEeccc
Confidence            36899999874  4666664  47777786 478888876543 22344555566777777665  47889999883321


Q ss_pred             ------eeEEEe-----cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC---CeeEEEecc------CcCceeEEEE
Q 019349          171 ------SHCEID-----AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE---ATKSYSFRR------GTYPSTIFSL  230 (342)
Q Consensus       171 ------~~~~~~-----~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~---~~~~~~~~~------~~~~~~v~~l  230 (342)
                            ....+.     .+...+-.++|+|.++.|..+-+..-. +++.+..   ...+.....      ......+.++
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l  176 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPK-RLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGL  176 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSE-EEEEEESTT-SS--EEEE-HHHH-HT--SS---EE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCCh-hhEEEccccCccceeeccccccccccceeccccce
Confidence                  112222     245668999999988888887776553 5776653   222111110      1112237889


Q ss_pred             EEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          231 SFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +++|...  ++++.+..+..|.++|.+
T Consensus       177 ~~~p~t~--~lliLS~es~~l~~~d~~  201 (248)
T PF06977_consen  177 SYDPRTG--HLLILSDESRLLLELDRQ  201 (248)
T ss_dssp             EEETTTT--EEEEEETTTTEEEEE-TT
T ss_pred             EEcCCCC--eEEEEECCCCeEEEECCC
Confidence            9999865  377777788889999844

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.72  E-value=0.17  Score=43.32  Aligned_cols=153  Identities=14%  Similarity=0.135  Sum_probs=96.0

Q ss_pred             CCCcEEEEEecCCceEEEEEcCCe-EEEEE----CCeEEEEECCCCceeeEEeCCCCC--ceEEEEeeCCCccEEEEeCC
Q 019349           83 TTGTALRELNFLTSILAVRLNKKR-LVIVL----REKTYIYDANTLAILDTIDTVPNL--KGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~-~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~  155 (342)
                      ..|+++.....+..-.+|.++|.. ..++.    .-...++|.++.+....+....+.  .+--++  ++++.+|...-.
T Consensus        56 eaGk~v~~~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvf--s~dG~~LYATEn  133 (366)
T COG3490          56 EAGKIVFATALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVF--SPDGRLLYATEN  133 (366)
T ss_pred             cCCceeeeeecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccccc--CCCCcEEEeecC
Confidence            357777777777777788887753 22222    346789999888777666443332  222233  456667765432


Q ss_pred             C---CccEEEEEEccCC-ceeEEEecccCCeeEEEECCCCCEEEEEeCC-------CcE----------EEEEEcCCCee
Q 019349          156 T---TKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNGMYIATASEQ-------GTI----------IRVFLVSEATK  214 (342)
Q Consensus       156 ~---~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d-------g~~----------irlwd~~~~~~  214 (342)
                      +   .-|.|-|||.+.+ +.+..+..|.-.-..+.+.+||+.|+.+.--       |+.          +-+-|..+|++
T Consensus       134 dfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~l  213 (366)
T COG3490         134 DFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNL  213 (366)
T ss_pred             CCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccch
Confidence            2   3488999998754 4567788888778889999999999987520       110          12445556655


Q ss_pred             EEEeccC--cCceeEEEEEEecCCC
Q 019349          215 SYSFRRG--TYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       215 ~~~~~~~--~~~~~v~~l~fs~d~~  237 (342)
                      +.+....  .+.-.|..|+..+|++
T Consensus       214 iekh~Lp~~l~~lSiRHld~g~dgt  238 (366)
T COG3490         214 IEKHTLPASLRQLSIRHLDIGRDGT  238 (366)
T ss_pred             hhhccCchhhhhcceeeeeeCCCCc
Confidence            5432211  2223477888888887

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.68  E-value=0.008  Score=36.77  Aligned_cols=31  Identities=19%  Similarity=0.450  Sum_probs=28.3

Q ss_pred             ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +.+|.+++|+|...   +||.++.+|.|.+|.+.
T Consensus        11 ~~~v~~~~w~P~md---LiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD---LIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCC---EEEEEECCCeEEEEECC
Confidence            45699999999998   99999999999999984

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.65  E-value=0.25  Score=45.93  Aligned_cols=172  Identities=16%  Similarity=0.074  Sum_probs=90.6

Q ss_pred             CeEEEEECCCCcEEEEEecCC-ceEEEEEcCCeEEE--E-E---C-CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC
Q 019349           75 RRLCLFNTTTGTALRELNFLT-SILAVRLNKKRLVI--V-L---R-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN  146 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~~~--~-~---d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (342)
                      ..+.+-|.. |.....+.... .+..-.|.++..-+  . .   . ..++++++.+++.........+   ..+-.++||
T Consensus       173 ~~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~---~~~P~fspD  248 (425)
T COG0823         173 YELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGN---NGAPAFSPD  248 (425)
T ss_pred             ceEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCc---cCCccCCCC
Confidence            445555543 33333333222 34444555553222  1 1   2 3699999988765555442222   223455677


Q ss_pred             ccEEEEeCCCCccE--EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE--EcCCCeeEEEeccCc
Q 019349          147 ACFLAVPASTTKGS--VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF--LVSEATKSYSFRRGT  222 (342)
Q Consensus       147 ~~~l~~~~~~~~g~--i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw--d~~~~~~~~~~~~~~  222 (342)
                      +..++++.. .+|.  |.++|+......+ +..-.+.-..=.|+|||++|+-.|..+..-+||  |...++. ..+....
T Consensus       249 G~~l~f~~~-rdg~~~iy~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~  325 (425)
T COG0823         249 GSKLAFSSS-RDGSPDIYLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSG  325 (425)
T ss_pred             CCEEEEEEC-CCCCccEEEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccC
Confidence            788887765 4565  5556776665332 332222222346999999999887654322444  4444432 3322221


Q ss_pred             CceeEEEEEEecCCCcccEEEEEeC-CCc--EEEEecCC
Q 019349          223 YPSTIFSLSFGQSMQFQDILVATSS-SGS--LHVFSPGF  258 (342)
Q Consensus       223 ~~~~v~~l~fs~d~~~~~~l~~~s~-dg~--i~vwd~~~  258 (342)
                      ...  ..-.+||||+   +|+..+. +|.  |.+.|+..
T Consensus       326 ~~~--~~p~~SpdG~---~i~~~~~~~g~~~i~~~~~~~  359 (425)
T COG0823         326 GGN--SNPVWSPDGD---KIVFESSSGGQWDIDKNDLAS  359 (425)
T ss_pred             CCC--cCccCCCCCC---EEEEEeccCCceeeEEeccCC
Confidence            111  1567899999   7777764 344  44444443

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.63  E-value=0.0067  Score=37.12  Aligned_cols=35  Identities=14%  Similarity=0.230  Sum_probs=29.9

Q ss_pred             cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349          179 QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS  215 (342)
Q Consensus       179 ~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~  215 (342)
                      ..+|.+++|+|...+||.++.||.+ .++.+ +++.+
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v-~v~Rl-~~qri   45 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEV-LVYRL-NWQRI   45 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeE-EEEEC-CCcCc
Confidence            4569999999999999999999985 59998 66654

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.59  E-value=0.00092  Score=62.48  Aligned_cols=197  Identities=15%  Similarity=0.242  Sum_probs=110.9

Q ss_pred             CCEEEEEEcCCCC-eEEEEcCCCCCCCCCCeEEEEECCCCcEE-EEEe--cCCceEEEEEcCC---eEEEEE-----CCe
Q 019349           47 GAFSIVEMLYSSS-LLAIVGAGEQPSLSPRRLCLFNTTTGTAL-RELN--FLTSILAVRLNKK---RLVIVL-----REK  114 (342)
Q Consensus        47 ~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~i~iwd~~~~~~~-~~~~--~~~~v~~i~~~~~---~~~~~~-----d~~  114 (342)
                      ..+.+++..+..+ .+..+|.      .+|.|-+-..+...-- .++.  +....++++|++-   .+++..     |..
T Consensus        57 qy~kcva~~y~~d~cIlavG~------atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~  130 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGS------ATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSS  130 (783)
T ss_pred             CCceeehhhcCCchhhhhhcc------ccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCC
Confidence            4455666555554 3333332      4678887776543322 2221  2236677787653   233332     457


Q ss_pred             EEEEECCCC--ceeeE--EeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECC
Q 019349          115 TYIYDANTL--AILDT--IDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSS  189 (342)
Q Consensus       115 i~i~d~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~  189 (342)
                      +.|||+.++  .+..+  +.+ ....+...+++..+...+. +|. ....+.++|++.. .....+  .+..+..+.++|
T Consensus       131 ~~Iwdi~s~ltvPke~~~fs~-~~l~gqns~cwlrd~klvl-aGm-~sr~~~ifdlRqs~~~~~sv--nTk~vqG~tVdp  205 (783)
T KOG1008|consen  131 LKIWDINSLLTVPKESPLFSS-STLDGQNSVCWLRDTKLVL-AGM-TSRSVHIFDLRQSLDSVSSV--NTKYVQGITVDP  205 (783)
T ss_pred             ccceecccccCCCcccccccc-ccccCccccccccCcchhh-ccc-ccchhhhhhhhhhhhhhhhh--hhhhcccceecC
Confidence            999999875  22111  211 1112233556655544444 443 4678999999832 222222  234566678888


Q ss_pred             -CCCEEEEEeCCCcEEEEEEc-CCCe-eEEEeccC--cCceeEEEEEEecCCCcccEEEEEeCC-CcEEEEecCC
Q 019349          190 -NGMYIATASEQGTIIRVFLV-SEAT-KSYSFRRG--TYPSTIFSLSFGQSMQFQDILVATSSS-GSLHVFSPGF  258 (342)
Q Consensus       190 -dg~~lat~s~dg~~irlwd~-~~~~-~~~~~~~~--~~~~~v~~l~fs~d~~~~~~l~~~s~d-g~i~vwd~~~  258 (342)
                       .++++++-+ ||. |-+||. ++-+ .+..+...  ..+..+..++|.|...+  .|++.+.| ++|+++|+..
T Consensus       206 ~~~nY~cs~~-dg~-iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg--lla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  206 FSPNYFCSNS-DGD-IAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG--LLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             CCCCceeccc-cCc-eeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc--hhhhhccCcceEEEecccc
Confidence             889999887 665 579994 3222 11111111  11234889999998763  77777665 6899999854

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=96.59  E-value=0.39  Score=41.07  Aligned_cols=193  Identities=13%  Similarity=0.114  Sum_probs=101.3

Q ss_pred             CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEE-EE--CCeEEEEECC
Q 019349           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVI-VL--REKTYIYDAN  121 (342)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~-~~--d~~i~i~d~~  121 (342)
                      ..+.-+.+.++.+.++.+..      .+..|...+. +|+.+..+.+.+  ..-+|+.-.+..++ ..  ++.+.++++.
T Consensus        22 ~e~SGLTy~pd~~tLfaV~d------~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   22 DELSGLTYNPDTGTLFAVQD------EPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             S-EEEEEEETTTTEEEEEET------TTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             CCccccEEcCCCCeEEEEEC------CCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            34667788888888887776      3778888886 588888887754  67788876655544 44  5689988884


Q ss_pred             CC------ceeeEEe--CC-CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC---CceeE--EE------ecccCC
Q 019349          122 TL------AILDTID--TV-PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME---LHSHC--EI------DAHQAP  181 (342)
Q Consensus       122 ~~------~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~---~~~~~--~~------~~h~~~  181 (342)
                      ..      .....+.  .. .+..++-.+++++.+..|..+-  ...-..+|.+..   ...+.  ..      ..+...
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k--E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  172 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK--ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRD  172 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE--ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS-
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe--CCCChhhEEEccccCccceeeccccccccccceecc
Confidence            32      1122232  22 2345677788877654444442  233344554432   11111  11      123456


Q ss_pred             eeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCeeEEEe--ccCcCc-----eeEEEEEEecCCCcccEEEEEeCCCcEEE
Q 019349          182 LAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSF--RRGTYP-----STIFSLSFGQSMQFQDILVATSSSGSLHV  253 (342)
Q Consensus       182 v~~i~~s~dg-~~lat~s~dg~~irlwd~~~~~~~~~~--~~~~~~-----~~v~~l~fs~d~~~~~~l~~~s~dg~i~v  253 (342)
                      +.+++++|.. ++++-+.+.. .+-.+| .+|+.+..+  ..+.+.     ...-.|+|.++|+    |...|+-+..++
T Consensus       173 ~S~l~~~p~t~~lliLS~es~-~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~----LYIvsEpNlfy~  246 (248)
T PF06977_consen  173 LSGLSYDPRTGHLLILSDESR-LLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGN----LYIVSEPNLFYR  246 (248)
T ss_dssp             --EEEEETTTTEEEEEETTTT-EEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT------EEEEETTTEEEE
T ss_pred             ccceEEcCCCCeEEEEECCCC-eEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCC----EEEEcCCceEEE
Confidence            8899999954 5555555554 455888 567765544  322111     1367899999997    666677777776


Q ss_pred             E
Q 019349          254 F  254 (342)
Q Consensus       254 w  254 (342)
                      |
T Consensus       247 f  247 (248)
T PF06977_consen  247 F  247 (248)
T ss_dssp             E
T ss_pred             e
Confidence            6

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.57  E-value=0.49  Score=41.93  Aligned_cols=217  Identities=14%  Similarity=0.118  Sum_probs=115.6

Q ss_pred             EEcCCCCEEEEEc-CC-cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEE
Q 019349           14 SFNQDNSGFALST-KD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL   91 (342)
Q Consensus        14 ~fs~d~~~la~g~-~~-g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~   91 (342)
                      .|.++...|.-.. .. .+.-|+..+++.......+.+...........++.+         +..+.+++.+++..+..+
T Consensus        31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~~~~~d~~g~Lv~~---------~~g~~~~~~~~~~~~t~~  101 (307)
T COG3386          31 VWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGRLIAC---------EHGVRLLDPDTGGKITLL  101 (307)
T ss_pred             cCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCcccceeecCCCeEEEE---------ccccEEEeccCCceeEEe
Confidence            3556666554332 22 256666666644433333444433333334444443         345677777666553332


Q ss_pred             ec------CCceEEEEEcCCeEEEEECCe------------EEEEECC-CCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349           92 NF------LTSILAVRLNKKRLVIVLREK------------TYIYDAN-TLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (342)
Q Consensus        92 ~~------~~~v~~i~~~~~~~~~~~d~~------------i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  152 (342)
                      ..      .....++.+.+++.+.+++-.            -.+|-+. .+...+.+..+  ......++++||++.+..
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~--~~~~NGla~SpDg~tly~  179 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDD--LTIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCc--EEecCceEECCCCCEEEE
Confidence            21      123456666666554444211            1233333 33333333221  112235677788877777


Q ss_pred             eCCCCccEEEEEEccC--Cc----e-eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCce
Q 019349          153 PASTTKGSVLVYNVME--LH----S-HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  225 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~--~~----~-~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~  225 (342)
                      +.. ..+.|.-|++..  +.    . ...+..+.+..-.++...+|++-+.+-..|..|..|+.. |+++.++.-..  .
T Consensus       180 aDT-~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~--~  255 (307)
T COG3386         180 ADT-PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPV--K  255 (307)
T ss_pred             EeC-CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCC--C
Confidence            764 468888887752  21    1 122223455667788899999886665555335789987 88888775432  3


Q ss_pred             eEEEEEEe-cCCCcccEEEEEeCC
Q 019349          226 TIFSLSFG-QSMQFQDILVATSSS  248 (342)
Q Consensus       226 ~v~~l~fs-~d~~~~~~l~~~s~d  248 (342)
                      .+.+++|- |+.+   .|.+.+..
T Consensus       256 ~~t~~~FgG~~~~---~L~iTs~~  276 (307)
T COG3386         256 RPTNPAFGGPDLN---TLYITSAR  276 (307)
T ss_pred             CCccceEeCCCcC---EEEEEecC
Confidence            47788885 4444   55555544

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.12  Score=42.27  Aligned_cols=94  Identities=14%  Similarity=0.169  Sum_probs=58.3

Q ss_pred             EEEEeCCCCcEEEEEeeCCEEEE--EEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeE
Q 019349           30 FKIFDSSTGRLCYERAVGAFSIV--EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRL  107 (342)
Q Consensus        30 ~~v~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~  107 (342)
                      +++||+.+++.+++....+-...  .+....+.+....-      .++.-..+|..+-+++..+.+++.=.+++-..+.+
T Consensus        70 ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw------~egvaf~~d~~t~~~lg~~~y~GeGWgLt~d~~~L  143 (262)
T COG3823          70 IRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW------KEGVAFKYDADTLEELGRFSYEGEGWGLTSDDKNL  143 (262)
T ss_pred             eEEEeccCceEEEEeecCCccccccceeeccceEEEEEe------ccceeEEEChHHhhhhcccccCCcceeeecCCcce
Confidence            69999999998887654321100  11122344444443      57788889999999999998888888888777765


Q ss_pred             EEEE-CCeEEEEECCCCceeeEE
Q 019349          108 VIVL-REKTYIYDANTLAILDTI  129 (342)
Q Consensus       108 ~~~~-d~~i~i~d~~~~~~~~~~  129 (342)
                      +... ..+++.-|-++...+.++
T Consensus       144 imsdGsatL~frdP~tfa~~~~v  166 (262)
T COG3823         144 IMSDGSATLQFRDPKTFAELDTV  166 (262)
T ss_pred             EeeCCceEEEecCHHHhhhcceE
Confidence            4443 224554455544433333

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.46  E-value=1.1  Score=44.80  Aligned_cols=173  Identities=17%  Similarity=0.157  Sum_probs=108.5

Q ss_pred             CeEEEEECCCCcEEEEEecCC-----ceEEEEEcCC---eEEEEE-----------CCeEEEEECCCCceeeEEeCCCCC
Q 019349           75 RRLCLFNTTTGTALRELNFLT-----SILAVRLNKK---RLVIVL-----------REKTYIYDANTLAILDTIDTVPNL  135 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~-----~v~~i~~~~~---~~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~~  135 (342)
                      .-++++|-.+-+.+...++..     ++.+..|..+   .+++++           .|.|.+|.+..++.++.+....-.
T Consensus       750 s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~  829 (1096)
T KOG1897|consen  750 SFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVK  829 (1096)
T ss_pred             EEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeec
Confidence            347888888877766655532     4455557554   334433           367888888764333333211111


Q ss_pred             ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE--EEcCCCe
Q 019349          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV--FLVSEAT  213 (342)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl--wd~~~~~  213 (342)
                      ..+.++..- ++.++|.-+    ..|++|++.+.+.++.-..|..++..+.+.-.|..+|.|..-+++ .+  |+-..|.
T Consensus       830 Gav~aL~~f-ngkllA~In----~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Si-tll~y~~~eg~  903 (1096)
T KOG1897|consen  830 GAVYALVEF-NGKLLAGIN----QSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSI-TLLQYKGDEGN  903 (1096)
T ss_pred             cceeehhhh-CCeEEEecC----cEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceE-EEEEEeccCCc
Confidence            223333332 456777554    679999999987777666788899999999999999999766653 33  3333333


Q ss_pred             eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          214 KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      . .++.+..++..++++.+-.+..    ++.+..+|.+.+-..++
T Consensus       904 f-~evArD~~p~Wmtaveil~~d~----ylgae~~gNlf~v~~d~  943 (1096)
T KOG1897|consen  904 F-EEVARDYNPNWMTAVEILDDDT----YLGAENSGNLFTVRKDS  943 (1096)
T ss_pred             e-EEeehhhCccceeeEEEecCce----EEeecccccEEEEEecC
Confidence            3 4444444455577788766664    66677778877776553

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.45  E-value=0.26  Score=45.79  Aligned_cols=135  Identities=15%  Similarity=0.200  Sum_probs=83.3

Q ss_pred             CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE----eCCCCccEEEEEEccCC-c-eeEEEecc----cCCe
Q 019349          113 EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV----PASTTKGSVLVYNVMEL-H-SHCEIDAH----QAPL  182 (342)
Q Consensus       113 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~g~i~iwd~~~~-~-~~~~~~~h----~~~v  182 (342)
                      +.++=.|++.|+.+.++..+.. ..++.+.+...+..|..    .|- .+..|.-||.+-. . .+..-++|    ....
T Consensus       356 ~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGL-s~n~vfriDpRv~~~~kl~~~q~kqy~~k~nF  433 (644)
T KOG2395|consen  356 DKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGL-SDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNF  433 (644)
T ss_pred             CcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEee-cCCceEEecccccCcceeeeeecccccccccc
Confidence            4677778888888888776554 33444444332222210    122 3677999998632 2 22222333    3456


Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          183 AAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       183 ~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      .|.+-..+| ++|.||.+|. |||||- .+...++.-.+ -..+|..+..+.||+   +|++++ +.++-+-++.
T Consensus       434 sc~aTT~sG-~IvvgS~~Gd-IRLYdr-i~~~AKTAlPg-LG~~I~hVdvtadGK---wil~Tc-~tyLlLi~t~  500 (644)
T KOG2395|consen  434 SCFATTESG-YIVVGSLKGD-IRLYDR-IGRRAKTALPG-LGDAIKHVDVTADGK---WILATC-KTYLLLIDTL  500 (644)
T ss_pred             ceeeecCCc-eEEEeecCCc-EEeehh-hhhhhhhcccc-cCCceeeEEeeccCc---EEEEec-ccEEEEEEEe
Confidence            777776665 7999999998 699997 55443333222 245689999999999   776555 4577777754

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.44  E-value=0.064  Score=49.29  Aligned_cols=85  Identities=21%  Similarity=0.217  Sum_probs=58.4

Q ss_pred             eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC------cCceeEEEEEEe-----cCCCcc
Q 019349          171 SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG------TYPSTIFSLSFG-----QSMQFQ  239 (342)
Q Consensus       171 ~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~------~~~~~v~~l~fs-----~d~~~~  239 (342)
                      +...+....++|++++.| |=-++|.|.++|++ -|.|++....++.-.-.      .....++++.|+     .|+..+
T Consensus        78 P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l-~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySS  155 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNS-DIGFVAIGYESGSL-VVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSS  155 (395)
T ss_dssp             EEEEE---S-SEEEEEE--BTSEEEEEETTSEE-EEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEE
T ss_pred             chhheeccCCcEeEEecC-CCcEEEEEecCCcE-EEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccc
Confidence            445556678999999997 55699999999986 59999988887763211      123347788886     344334


Q ss_pred             cEEEEEeCCCcEEEEecC
Q 019349          240 DILVATSSSGSLHVFSPG  257 (342)
Q Consensus       240 ~~l~~~s~dg~i~vwd~~  257 (342)
                      ..|++|.+.|.+.+|.+-
T Consensus       156 i~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  156 ICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEEETTSEEEEEEEE
T ss_pred             eEEEEEeCCCCEEEEEEe
Confidence            589999999999999884

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.43  E-value=0.95  Score=43.53  Aligned_cols=230  Identities=11%  Similarity=0.134  Sum_probs=124.3

Q ss_pred             EEEEEcCCc-EEEEeCCCCcEEEEEeeCCE----EEE--EEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEec
Q 019349           21 GFALSTKDG-FKIFDSSTGRLCYERAVGAF----SIV--EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF   93 (342)
Q Consensus        21 ~la~g~~~g-~~v~d~~~~~~~~~~~~~~~----~~~--~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~   93 (342)
                      .+.+++.++ +.-+|..+|+++.+......    ...  -... .+.+++...+.. ...++.|.-+|.++|+.+..+..
T Consensus       122 ~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~~  199 (527)
T TIGR03075       122 KVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRYT  199 (527)
T ss_pred             EEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CCEEEEeecccc-cCCCcEEEEEECCCCceeEeccC
Confidence            455555554 57788889988765432111    110  0111 223333221100 01367899999999998876543


Q ss_pred             CC--------------------------------ce-EEEEEcC--CeEEEEE-------------CC----eEEEEECC
Q 019349           94 LT--------------------------------SI-LAVRLNK--KRLVIVL-------------RE----KTYIYDAN  121 (342)
Q Consensus        94 ~~--------------------------------~v-~~i~~~~--~~~~~~~-------------d~----~i~i~d~~  121 (342)
                      ..                                .+ ..+.+++  +.+++.+             |+    .|.-.|++
T Consensus       200 ~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~  279 (527)
T TIGR03075       200 VPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPD  279 (527)
T ss_pred             cCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccc
Confidence            11                                01 0123333  2334333             12    56777888


Q ss_pred             CCceeeEEeCCCCC-------ceEEEEeeCCCcc---EEEEeCCCCccEEEEEEccCCceeEE--------Ee---c-cc
Q 019349          122 TLAILDTIDTVPNL-------KGLCAFSPSLNAC---FLAVPASTTKGSVLVYNVMELHSHCE--------ID---A-HQ  179 (342)
Q Consensus       122 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---~l~~~~~~~~g~i~iwd~~~~~~~~~--------~~---~-h~  179 (342)
                      +++....++..++.       .....+....++.   .++.+.  .+|.+.+.|..+++.+..        +.   . ..
T Consensus       280 TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~--K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~  357 (527)
T TIGR03075       280 TGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHAD--RNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKT  357 (527)
T ss_pred             cCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeC--CCceEEEEECCCCceeccccccCCcccccccCCCC
Confidence            99888777654432       1112222212333   455555  689999999999987521        10   0 00


Q ss_pred             -CCe----------------------------eEEEECCCCCEEEEEeCC------------------------------
Q 019349          180 -APL----------------------------AAIVLSSNGMYIATASEQ------------------------------  200 (342)
Q Consensus       180 -~~v----------------------------~~i~~s~dg~~lat~s~d------------------------------  200 (342)
                       .++                            ..++++|+..++.....+                              
T Consensus       358 g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~  437 (527)
T TIGR03075       358 GRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPD  437 (527)
T ss_pred             CCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccccCCCCC
Confidence             000                            125677766555444332                              


Q ss_pred             ---CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          201 ---GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       201 ---g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                         |. +.-+|+.+|+.+.+.+... +. ..+. +.-.+.   ++..++.+|.++.+|.++++.
T Consensus       438 ~~~g~-l~AiD~~tGk~~W~~~~~~-p~-~~~~-l~t~g~---lvf~g~~~G~l~a~D~~TGe~  494 (527)
T TIGR03075       438 DHMGS-LIAWDPITGKIVWEHKEDF-PL-WGGV-LATAGD---LVFYGTLEGYFKAFDAKTGEE  494 (527)
T ss_pred             CCcee-EEEEeCCCCceeeEecCCC-CC-CCcc-eEECCc---EEEEECCCCeEEEEECCCCCE
Confidence               33 4578989998877665332 10 1111 122444   677788899999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.38  E-value=0.63  Score=41.05  Aligned_cols=228  Identities=15%  Similarity=0.175  Sum_probs=95.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCc---EEEEEeeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR---LCYERAVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~---~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      +.+.++..|.|..+..-.++|....+ +-..+-|+   ........  ......+.+..+...+++.       .+ +.+
T Consensus        14 ~t~~~l~dV~F~d~~~G~~VG~~g~i-l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~-------~g-~ll   84 (302)
T PF14870_consen   14 PTDKPLLDVAFVDPNHGWAVGAYGTI-LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGE-------PG-LLL   84 (302)
T ss_dssp             S-SS-EEEEEESSSS-EEEEETTTEE-EEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEE-------TT-EEE
T ss_pred             CCCCceEEEEEecCCEEEEEecCCEE-EEECCCCccccccccCCCccceeeEEEEEecCCceEEEcC-------Cc-eEE
Confidence            45678999999976666788875432 22333331   11111111  1222233333444444443       23 223


Q ss_pred             EECCCCcEEEEEe----cCCceEEEE-EcCCeEEEEECCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           80 FNTTTGTALRELN----FLTSILAVR-LNKKRLVIVLREKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        80 wd~~~~~~~~~~~----~~~~v~~i~-~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      --...|+.=..+.    .+.....+. +.+....++.+. -.||-..++ +.=+.+.. .....+..+...+++.+++++
T Consensus        85 ~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l~~~~-G~iy~T~DgG~tW~~~~~-~~~gs~~~~~r~~dG~~vavs  162 (302)
T PF14870_consen   85 HTTDGGKTWERVPLSSKLPGSPFGITALGDGSAELAGDR-GAIYRTTDGGKTWQAVVS-ETSGSINDITRSSDGRYVAVS  162 (302)
T ss_dssp             EESSTTSS-EE----TT-SS-EEEEEEEETTEEEEEETT---EEEESSTTSSEEEEE--S----EEEEEE-TTS-EEEEE
T ss_pred             EecCCCCCcEEeecCCCCCCCeeEEEEcCCCcEEEEcCC-CcEEEeCCCCCCeeEccc-CCcceeEeEEECCCCcEEEEE
Confidence            2233343222222    233333333 344444444432 234444333 22122221 222446667778899999887


Q ss_pred             CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE-cCCCeeEEE--eccCcCceeEEEE
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL-VSEATKSYS--FRRGTYPSTIFSL  230 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd-~~~~~~~~~--~~~~~~~~~v~~l  230 (342)
                      ..  ..-..-||-....-...-..-...|.+|.|+|++.+.+.+ ..|. ++.=+ ....+...+  .......-.+.+|
T Consensus       163 ~~--G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~-~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~  238 (302)
T PF14870_consen  163 SR--GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQ-IQFSDDPDDGETWSEPIIPIKTNGYGILDL  238 (302)
T ss_dssp             TT--SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTE-EEEEE-TTEEEEE---B-TTSS--S-EEEE
T ss_pred             Cc--ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcE-EEEccCCCCccccccccCCcccCceeeEEE
Confidence            63  3334567754321111112235689999999998876655 5564 55544 122222111  1110111238899


Q ss_pred             EEecCCCcccEEEEEeCCCcE
Q 019349          231 SFGQSMQFQDILVATSSSGSL  251 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s~dg~i  251 (342)
                      +|.+++.   ..|+|+ .|++
T Consensus       239 a~~~~~~---~wa~gg-~G~l  255 (302)
T PF14870_consen  239 AYRPPNE---IWAVGG-SGTL  255 (302)
T ss_dssp             EESSSS----EEEEES-TT-E
T ss_pred             EecCCCC---EEEEeC-CccE
Confidence            9999987   565554 4554

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=96.37  E-value=0.00048  Score=64.32  Aligned_cols=155  Identities=17%  Similarity=0.239  Sum_probs=88.7

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCC----c-EEEEeCCCC------cEEEEE-eeCCEEEEEEcCCCCeEEEEcCCCCC
Q 019349            4 QSSSYPVFFVSFNQ-DNSGFALSTKD----G-FKIFDSSTG------RLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQP   70 (342)
Q Consensus         4 ~~~~~~V~~l~fs~-d~~~la~g~~~----g-~~v~d~~~~------~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~   70 (342)
                      ++...+.++++|++ |-+.||+|-++    . +.|||+.++      ...+.. ...+...+++. ....++++|.    
T Consensus        99 p~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwl-rd~klvlaGm----  173 (783)
T KOG1008|consen   99 PGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWL-RDTKLVLAGM----  173 (783)
T ss_pred             ccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccc-cCcchhhccc----
Confidence            34455788999998 55678888653    2 699998876      112222 22344456666 3344555554    


Q ss_pred             CCCCCeEEEEECCCCcEE-EEEecCCceEEEEEcC---CeEEEEECCeEEEEEC-CCC-ceeeEEeCCCC--CceEEEEe
Q 019349           71 SLSPRRLCLFNTTTGTAL-RELNFLTSILAVRLNK---KRLVIVLREKTYIYDA-NTL-AILDTIDTVPN--LKGLCAFS  142 (342)
Q Consensus        71 ~~~d~~i~iwd~~~~~~~-~~~~~~~~v~~i~~~~---~~~~~~~d~~i~i~d~-~~~-~~~~~~~~~~~--~~~~~~~~  142 (342)
                        ..+.+++.|++..... .++. ...+.++.+.|   +++....|+.|.+||. .+- .++..+....+  +..+.+++
T Consensus       174 --~sr~~~ifdlRqs~~~~~svn-Tk~vqG~tVdp~~~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~a  250 (783)
T KOG1008|consen  174 --TSRSVHIFDLRQSLDSVSSVN-TKYVQGITVDPFSPNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALA  250 (783)
T ss_pred             --ccchhhhhhhhhhhhhhhhhh-hhhcccceecCCCCCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEE
Confidence              4678999998743221 1111 22455566554   5555555999999993 222 22333322222  33455555


Q ss_pred             eCCCc-cEEEEeCCCCccEEEEEEcc
Q 019349          143 PSLNA-CFLAVPASTTKGSVLVYNVM  167 (342)
Q Consensus       143 ~~~~~-~~l~~~~~~~~g~i~iwd~~  167 (342)
                      +.|.. ..+++..+ ..++|+++|+.
T Consensus       251 ycPtrtglla~l~R-dS~tIrlydi~  275 (783)
T KOG1008|consen  251 YCPTRTGLLAVLSR-DSITIRLYDIC  275 (783)
T ss_pred             eccCCcchhhhhcc-CcceEEEeccc
Confidence            55532 24455555 68999999984

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=96.33  E-value=0.019  Score=54.61  Aligned_cols=124  Identities=11%  Similarity=0.057  Sum_probs=80.7

Q ss_pred             ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          178 HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       178 h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      |...|.--+++..+++|+.|+.-|.+ .+|+-..++... +..+.....+..++.|++..   +.|+|+..|.|.+|.+.
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~l-yl~~R~~~~~~~-~~~~~~~~~~~~~~vs~~e~---lvAagt~~g~V~v~ql~  106 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSV-YLYNRHTGEMRK-LKNEGATGITCVRSVSSVEY---LVAAGTASGRVSVFQLN  106 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceE-EEEecCchhhhc-ccccCccceEEEEEecchhH---hhhhhcCCceEEeehhh
Confidence            33445555667788999999999975 688876665432 22222234466778899998   89999999999999987


Q ss_pred             CCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          258 FAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      ...++.. ...+..-..+........|+++.              .++++|..-|+|..-.++.
T Consensus       107 ~~~p~~~-~~~t~~d~~~~~rVTal~Ws~~~--------------~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  107 KELPRDL-DYVTPCDKSHKCRVTALEWSKNG--------------MKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             ccCCCcc-eeeccccccCCceEEEEEecccc--------------cEEeecCCCceEEEEEech
Confidence            7333221 11011000111111234576655              7899999999999988887

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.30  E-value=0.73  Score=44.82  Aligned_cols=111  Identities=12%  Similarity=0.028  Sum_probs=63.2

Q ss_pred             EEEeeCCCccEEEEeCC------CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349          139 CAFSPSLNACFLAVPAS------TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       139 ~~~~~~~~~~~l~~~~~------~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~  212 (342)
                      ...+.++++..+|+...      +....|.+++... .......+  ...+.-.|+|||..|++.+....+.++.+-...
T Consensus       353 sspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~  429 (591)
T PRK13616        353 TSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-VAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDPAT  429 (591)
T ss_pred             ccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-cceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccCCC
Confidence            34455667777776541      1233566666532 22222233  237778899999999988754344444443222


Q ss_pred             eeEEEec--cC----cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349          213 TKSYSFR--RG----TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       213 ~~~~~~~--~~----~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      ..++.+.  .+    .....|..+.|||||.   .+|... ++.|+|=-+
T Consensus       430 gql~~~~vd~ge~~~~~~g~Issl~wSpDG~---RiA~i~-~g~v~Va~V  475 (591)
T PRK13616        430 GQLARTPVDASAVASRVPGPISELQLSRDGV---RAAMII-GGKVYLAVV  475 (591)
T ss_pred             ceEEEEeccCchhhhccCCCcCeEEECCCCC---EEEEEE-CCEEEEEEE
Confidence            2222111  10    1123599999999999   888776 477777444

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.22  E-value=0.31  Score=35.76  Aligned_cols=101  Identities=18%  Similarity=0.189  Sum_probs=61.2

Q ss_pred             EEEEeeCCCcc-EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE
Q 019349          138 LCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY  216 (342)
Q Consensus       138 ~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~  216 (342)
                      ++.+.+++++. -|++++  .|..|++|+-.  +.+..+..+ +.|++++-... ..++.|-+.|++ -+++-  .+.+.
T Consensus         5 l~~~d~d~dg~~eLlvGs--~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTV-GvY~~--~~RlW   75 (111)
T PF14783_consen    5 LCLFDFDGDGENELLVGS--DDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTV-GVYDR--SQRLW   75 (111)
T ss_pred             EEEEecCCCCcceEEEec--CCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEE-EEEeC--cceee
Confidence            33344444432 344444  69999999854  455666553 45777766655 679999999984 78875  33444


Q ss_pred             EeccCcCceeEEEEEEe---cCCCcccEEEEEeCCCcEE
Q 019349          217 SFRRGTYPSTIFSLSFG---QSMQFQDILVATSSSGSLH  252 (342)
Q Consensus       217 ~~~~~~~~~~v~~l~fs---~d~~~~~~l~~~s~dg~i~  252 (342)
                      +.+...   .+.+|++.   .||.  .-|++|=.+|.|-
T Consensus        76 RiKSK~---~~~~~~~~D~~gdG~--~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKSKN---QVTSMAFYDINGDGV--PELIVGWSNGKVE  109 (111)
T ss_pred             eeccCC---CeEEEEEEcCCCCCc--eEEEEEecCCeEE
Confidence            443222   24555443   3443  3688888888774

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.04  E-value=0.38  Score=35.27  Aligned_cols=96  Identities=13%  Similarity=0.124  Sum_probs=59.2

Q ss_pred             CCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC-eEEEEE-CCeEEEEECCCCceeeEEeCCC
Q 019349           56 YSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK-RLVIVL-REKTYIYDANTLAILDTIDTVP  133 (342)
Q Consensus        56 ~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~~-d~~i~i~d~~~~~~~~~~~~~~  133 (342)
                      -++..-++++.      .|..|++|+-  .+.+.++...+.|..+.-... .+..+. .|+|-+|+-.  +.+..++...
T Consensus        12 ~dg~~eLlvGs------~D~~IRvf~~--~e~~~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~   81 (111)
T PF14783_consen   12 GDGENELLVGS------DDFEIRVFKG--DEIVAEITETDKVTSLCSLGGGRFAYALANGTVGVYDRS--QRLWRIKSKN   81 (111)
T ss_pred             CCCcceEEEec------CCcEEEEEeC--CcEEEEEecccceEEEEEcCCCEEEEEecCCEEEEEeCc--ceeeeeccCC
Confidence            33445555655      5999999984  478889988888988876544 444444 7799888752  3344444444


Q ss_pred             CCceEEEEeeCCCccEEEEeCCCCccEEE
Q 019349          134 NLKGLCAFSPSLNACFLAVPASTTKGSVL  162 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~  162 (342)
                      .+..+..+..+.++..-...|. .+|.|-
T Consensus        82 ~~~~~~~~D~~gdG~~eLI~Gw-snGkve  109 (111)
T PF14783_consen   82 QVTSMAFYDINGDGVPELIVGW-SNGKVE  109 (111)
T ss_pred             CeEEEEEEcCCCCCceEEEEEe-cCCeEE
Confidence            4555555555555544333333 456653

>PRK10115 protease 2; Provisional

Probab=96.00  E-value=1.9  Score=42.96  Aligned_cols=243  Identities=12%  Similarity=0.055  Sum_probs=119.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-c-----EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            9 PVFFVSFNQDNSGFALSTKD-G-----FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~-g-----~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      .+..+.+||||++|+.+.+. |     +++.|+.+++.+.....+.-..+.|..+++.+++....... .....|..+++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~-~~~~~v~~h~l  206 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVT-LLPYQVWRHTI  206 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCC-CCCCEEEEEEC
Confidence            47778999999999877543 3     46778888764332211212346777777777766542110 13468999999


Q ss_pred             CCC--cEEEEEecC-CceE-EEEEc--CCeEEEEE----CCeEEEEECC--CCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349           83 TTG--TALRELNFL-TSIL-AVRLN--KKRLVIVL----REKTYIYDAN--TLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        83 ~~~--~~~~~~~~~-~~v~-~i~~~--~~~~~~~~----d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                      .++  +...-++.. .... .+..+  ...+++..    ++.+.+++..  ++.....+.....  ....+....+..++
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ly~  284 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKD--HEYSLDHYQHRFYL  284 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCC--CEEEEEeCCCEEEE
Confidence            888  322223222 2121 22222  33444433    4578888853  3332222222211  22222322333333


Q ss_pred             EEeCCCCccEEEEEEccCCceeEEEecc-c-CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC-CeeEEEeccCcCceeE
Q 019349          151 AVPASTTKGSVLVYNVMELHSHCEIDAH-Q-APLAAIVLSSNGMYIATASEQGTIIRVFLVSE-ATKSYSFRRGTYPSTI  227 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~h-~-~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~-~~~~~~~~~~~~~~~v  227 (342)
                      .+........|...++........+-.+ . ..|..+.+.. +.++++...+|. -+++-+.. +..+..+... .+..+
T Consensus       285 ~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~-~~l~~~~~~~~~~~~l~~~-~~~~~  361 (686)
T PRK10115        285 RSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGL-TSLRQINRKTREVIGIAFD-DPAYV  361 (686)
T ss_pred             EEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCE-EEEEEEcCCCCceEEecCC-CCceE
Confidence            3322112344555565532222334444 3 3688888873 355556666664 34554432 3333443211 12223


Q ss_pred             EEEEEe--cCCCcccEEEEEeCC---CcEEEEecCCC
Q 019349          228 FSLSFG--QSMQFQDILVATSSS---GSLHVFSPGFA  259 (342)
Q Consensus       228 ~~l~fs--~d~~~~~~l~~~s~d---g~i~vwd~~~~  259 (342)
                      ..+.++  +++.  .++++.++-   +++..+|+++.
T Consensus       362 ~~~~~~~~~~~~--~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        362 TWIAYNPEPETS--RLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             eeecccCCCCCc--eEEEEEecCCCCCEEEEEECCCC
Confidence            334455  3332  144444432   56888887664

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.96  E-value=0.93  Score=39.05  Aligned_cols=69  Identities=10%  Similarity=0.105  Sum_probs=47.7

Q ss_pred             cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349          179 QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       179 ~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      .+-|-+|+.+.+..+++..|-.|...-+||..+|..+.+-.-    .....++  +...   =+++.|.+|.+.++.-
T Consensus       279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l----~daaGva--~~~~---gf~vssg~G~~~~~s~  347 (366)
T COG3490         279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAAL----PDAAGVA--AAKG---GFAVSSGQGRIIFYSR  347 (366)
T ss_pred             HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEecccc----cccccce--eccC---ceEEecCCceEEeccc
Confidence            345778899887777777777777777999999987654321    1123333  3333   4788888999998853

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.96  E-value=1  Score=44.84  Aligned_cols=80  Identities=15%  Similarity=0.209  Sum_probs=53.6

Q ss_pred             CeeEEEECCCCCEEEEEeCCCcEEEEEEcCC----------Cee--EEE-ec------cCcCceeEEEEEEecCCCcccE
Q 019349          181 PLAAIVLSSNGMYIATASEQGTIIRVFLVSE----------ATK--SYS-FR------RGTYPSTIFSLSFGQSMQFQDI  241 (342)
Q Consensus       181 ~v~~i~~s~dg~~lat~s~dg~~irlwd~~~----------~~~--~~~-~~------~~~~~~~v~~l~fs~d~~~~~~  241 (342)
                      .|..|.+||+|++||-.|..|-.  |-.+..          |+.  ..+ +.      .......|..+.|+|.+.....
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~v~--V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~  163 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRGVV--VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH  163 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCcEE--EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence            58889999999999999998743  444421          111  111 10      1112345889999997521238


Q ss_pred             EEEEeCCCcEEEEecCCCCCC
Q 019349          242 LVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       242 l~~~s~dg~i~vwd~~~~~~~  262 (342)
                      |++=.+|+++++||+.....+
T Consensus       164 l~vLtsdn~lR~y~~~~~~~p  184 (717)
T PF10168_consen  164 LVVLTSDNTLRLYDISDPQHP  184 (717)
T ss_pred             EEEEecCCEEEEEecCCCCCC
Confidence            999999999999999765544

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=95.87  E-value=0.027  Score=54.85  Aligned_cols=107  Identities=18%  Similarity=0.233  Sum_probs=74.7

Q ss_pred             eeCCCccEEEEeC--CCCccEEEEEEccCCceeE--EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEE
Q 019349          142 SPSLNACFLAVPA--STTKGSVLVYNVMELHSHC--EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS  217 (342)
Q Consensus       142 ~~~~~~~~l~~~~--~~~~g~i~iwd~~~~~~~~--~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~  217 (342)
                      +++|...++|++.  -...|.|.||- .+|++..  +.+-|   +++++|+|..-.|+.|-+-|. +.+|...+.+. ++
T Consensus        22 SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h---atSLCWHpe~~vLa~gwe~g~-~~v~~~~~~e~-ht   95 (1416)
T KOG3617|consen   22 SWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH---ATSLCWHPEEFVLAQGWEMGV-SDVQKTNTTET-HT   95 (1416)
T ss_pred             ccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccccccee---hhhhccChHHHHHhhccccce-eEEEecCCcee-ee
Confidence            3444444554432  11457888874 4454432  23333   467999999888888888885 58999876543 44


Q ss_pred             eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      .. ..++++|..+.|||+|.   .|.++..-|.|++|....
T Consensus        96 v~-~th~a~i~~l~wS~~G~---~l~t~d~~g~v~lwr~d~  132 (1416)
T KOG3617|consen   96 VV-ETHPAPIQGLDWSHDGT---VLMTLDNPGSVHLWRYDV  132 (1416)
T ss_pred             ec-cCCCCCceeEEecCCCC---eEEEcCCCceeEEEEeee
Confidence            43 24677899999999999   999999999999999874

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.75  E-value=0.035  Score=45.88  Aligned_cols=100  Identities=12%  Similarity=0.140  Sum_probs=62.5

Q ss_pred             EEEECCeEEEEECCCCc-eeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEeccc-CCeeEE
Q 019349          108 VIVLREKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ-APLAAI  185 (342)
Q Consensus       108 ~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~-~~v~~i  185 (342)
                      +..+++.|++|+..-.. ....+....+  .+.+.-+..+...+++.+. .+|.|+.|++.-.+.+.....|. .++...
T Consensus        75 vG~~dg~v~~~n~n~~g~~~d~~~s~~e--~i~~~Ip~~~~~~~~c~~~-~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~  151 (238)
T KOG2444|consen   75 VGTSDGAVYVFNWNLEGAHSDRVCSGEE--SIDLGIPNGRDSSLGCVGA-QDGRIRACNIKPNKVLGYVGQHNFESGEEL  151 (238)
T ss_pred             eecccceEEEecCCccchHHHhhhcccc--cceeccccccccceeEEec-cCCceeeeccccCceeeeeccccCCCccee
Confidence            33448999999876221 1111111111  2333333333333555554 79999999999988888777787 667777


Q ss_pred             EECCCCCEEEEE--eCCCcEEEEEEcCC
Q 019349          186 VLSSNGMYIATA--SEQGTIIRVFLVSE  211 (342)
Q Consensus       186 ~~s~dg~~lat~--s~dg~~irlwd~~~  211 (342)
                      ..+..+++|+.+  |.|.. ++.|++..
T Consensus       152 ivv~sd~~i~~a~~S~d~~-~k~W~ve~  178 (238)
T KOG2444|consen  152 IVVGSDEFLKIADTSHDRV-LKKWNVEK  178 (238)
T ss_pred             EEecCCceEEeeccccchh-hhhcchhh
Confidence            777777778877  77764 57888754

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=95.60  E-value=2.9  Score=42.07  Aligned_cols=229  Identities=12%  Similarity=0.121  Sum_probs=114.7

Q ss_pred             CCCCeEEEEECCCCc-EEEEEecCC--ceEEEE--Ec---CCeEEEEECCeEEEEECCCCceeeEEeC--CCCCceEEEE
Q 019349           72 LSPRRLCLFNTTTGT-ALRELNFLT--SILAVR--LN---KKRLVIVLREKTYIYDANTLAILDTIDT--VPNLKGLCAF  141 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~-~~~~~~~~~--~v~~i~--~~---~~~~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~  141 (342)
                      +.|+++++..-.-+- ....++.++  .+..+.  ++   ++.+++..-+.-++..+... ...+...  ......+.+-
T Consensus       379 ~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvlsf~~eTrvl~i~~e-~ee~~~~gf~~~~~Tif~S  457 (1096)
T KOG1897|consen  379 FKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVLSFISETRVLNISEE-VEETEDPGFSTDEQTIFCS  457 (1096)
T ss_pred             CCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEEEeccceEEEEEccc-eEEeccccccccCceEEEE
Confidence            468999997643332 234455555  444444  32   23555555666666666432 1111110  0111122221


Q ss_pred             eeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC
Q 019349          142 SPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG  221 (342)
Q Consensus       142 ~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~  221 (342)
                      ...++ +.+=..    ...|++++-.  .....+.. ...++..+.+.+...++.++.++.++ ..++..+. +.+....
T Consensus       458 ~i~g~-~lvQvT----s~~iRl~ss~--~~~~~W~~-p~~~ti~~~~~n~sqVvvA~~~~~l~-y~~i~~~~-l~e~~~~  527 (1096)
T KOG1897|consen  458 TINGN-QLVQVT----SNSIRLVSSA--GLRSEWRP-PGKITIGVVSANASQVVVAGGGLALF-YLEIEDGG-LREVSHK  527 (1096)
T ss_pred             ccCCc-eEEEEe----cccEEEEcch--hhhhcccC-CCceEEEEEeecceEEEEecCccEEE-EEEeeccc-eeeeeeh
Confidence            22222 122221    2457777754  12223332 23345555556666788887776543 55665544 3333223


Q ss_pred             cCceeEEEEEEecCCCccc---EEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCC
Q 019349          222 TYPSTIFSLSFGQSMQFQD---ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPA  298 (342)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~~---~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (342)
                      ....+|.|+.++|-+..++   ++++|..+..+.+--.-.......   .+..-+...|..             .....+
T Consensus       528 ~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~---~~~l~~~~iPRS-------------Il~~~~  591 (1096)
T KOG1897|consen  528 EFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILIT---HEQLSGEIIPRS-------------ILLTTF  591 (1096)
T ss_pred             eecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceee---eeccCCCccchh-------------eeeEEe
Confidence            3355699999997643334   899998887765543222111000   000001112211             111122


Q ss_pred             CccccEEEEEEeCCcEEEEEEecCCCCee
Q 019349          299 GVKRASVSVITYNGYFVEYIFSINNCCES  327 (342)
Q Consensus       299 ~~~~~~l~~~~~dg~v~~~~~~~~~~~~~  327 (342)
                      ..+..+|.++..||.+..|.++...++.+
T Consensus       592 e~d~~yLlvalgdG~l~~fv~d~~tg~ls  620 (1096)
T KOG1897|consen  592 EGDIHYLLVALGDGALLYFVLDINTGQLS  620 (1096)
T ss_pred             eccceEEEEEcCCceEEEEEEEcccceEc
Confidence            33357999999999999999998877654

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=95.57  E-value=1.5  Score=43.13  Aligned_cols=159  Identities=21%  Similarity=0.256  Sum_probs=89.6

Q ss_pred             cCCceEEEEEcCCeEEEEECCeEEEEECCCCcee------eEEeCCC--------------CCc--eEEEEeeCCCccEE
Q 019349           93 FLTSILAVRLNKKRLVIVLREKTYIYDANTLAIL------DTIDTVP--------------NLK--GLCAFSPSLNACFL  150 (342)
Q Consensus        93 ~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~------~~~~~~~--------------~~~--~~~~~~~~~~~~~l  150 (342)
                      +.+...++.- .+.+++|..+.|+||++......      ..+.+.+              .+.  ...-+..-++...|
T Consensus        39 fKNNLtalsq-~n~LFiA~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVL  117 (717)
T PF08728_consen   39 FKNNLTALSQ-RNLLFIAYQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVL  117 (717)
T ss_pred             cccceeEEec-CCEEEEEECCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEE
Confidence            3344444433 77788888999999998643221      1111111              111  11122222334456


Q ss_pred             EEeCCCCccEEEEEEccC-------C-------------ceeEEEecccCCeeEEEEC--CCCCEEEEEeCCCcEEEEEE
Q 019349          151 AVPASTTKGSVLVYNVME-------L-------------HSHCEIDAHQAPLAAIVLS--SNGMYIATASEQGTIIRVFL  208 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~-------~-------------~~~~~~~~h~~~v~~i~~s--~dg~~lat~s~dg~~irlwd  208 (342)
                      +++.  .||.|.+|.+++       .             ++...+. -....+.+++.  ...++||.++.... |.||-
T Consensus       118 l~c~--DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~-VTVFa  193 (717)
T PF08728_consen  118 LLCT--DDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQE-VTVFA  193 (717)
T ss_pred             EEEe--cCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCce-EEEEE
Confidence            6555  689999997621       1             0112222 23467889998  77777777776654 56776


Q ss_pred             cCCC-eeEEEeccCcCceeEEEEEEecCCCccc---EEEEEeCCCcEEEEec
Q 019349          209 VSEA-TKSYSFRRGTYPSTIFSLSFGQSMQFQD---ILVATSSSGSLHVFSP  256 (342)
Q Consensus       209 ~~~~-~~~~~~~~~~~~~~v~~l~fs~d~~~~~---~l~~~s~dg~i~vwd~  256 (342)
                      .... +....-....+...|.+|+|-++....+   ++++++-.|.+-+|++
T Consensus       194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            5442 1111111122345699999987652112   7888999999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.41  E-value=0.059  Score=31.98  Aligned_cols=34  Identities=15%  Similarity=0.212  Sum_probs=27.3

Q ss_pred             eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      .+.++.|||+....++|+.+-.-|.|+|+|+++.
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            3789999986543458999989999999999853

It contains a characteristic DLL sequence motif.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.33  E-value=0.089  Score=47.81  Aligned_cols=93  Identities=12%  Similarity=0.103  Sum_probs=57.7

Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC--------------
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY--------------  223 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~--------------  223 (342)
                      .+.+.|||+.+++.... ......+....|||+|+.+|-... +.+ .+++..+++...--..+..              
T Consensus        22 ~~~y~i~d~~~~~~~~l-~~~~~~~~~~~~sP~g~~~~~v~~-~nl-y~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEE   98 (353)
T PF00930_consen   22 KGDYYIYDIETGEITPL-TPPPPKLQDAKWSPDGKYIAFVRD-NNL-YLRDLATGQETQLTTDGEPGIYNGVPDWVYEEE   98 (353)
T ss_dssp             EEEEEEEETTTTEEEES-S-EETTBSEEEE-SSSTEEEEEET-TEE-EEESSTTSEEEESES--TTTEEESB--HHHHHH
T ss_pred             ceeEEEEecCCCceEEC-cCCccccccceeecCCCeeEEEec-Cce-EEEECCCCCeEEeccccceeEEcCccceecccc
Confidence            47799999999764432 222567889999999999999875 454 6898887754322111100              


Q ss_pred             -ceeEEEEEEecCCCcccEEEEEeCC-CcEEEEec
Q 019349          224 -PSTIFSLSFGQSMQFQDILVATSSS-GSLHVFSP  256 (342)
Q Consensus       224 -~~~v~~l~fs~d~~~~~~l~~~s~d-g~i~vwd~  256 (342)
                       -..-..+-||||++   +||....| ..|+.+.+
T Consensus        99 v~~~~~~~~WSpd~~---~la~~~~d~~~v~~~~~  130 (353)
T PF00930_consen   99 VFDRRSAVWWSPDSK---YLAFLRFDEREVPEYPL  130 (353)
T ss_dssp             TSSSSBSEEE-TTSS---EEEEEEEE-TTS-EEEE
T ss_pred             ccccccceEECCCCC---EEEEEEECCcCCceEEe
Confidence             00124578999999   88877554 34555544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=95.25  E-value=0.8  Score=42.61  Aligned_cols=142  Identities=13%  Similarity=0.243  Sum_probs=85.5

Q ss_pred             CCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC---------eEEE-EECCeEEEEECCC-Cce
Q 019349           57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK---------RLVI-VLREKTYIYDANT-LAI  125 (342)
Q Consensus        57 ~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~---------~~~~-~~d~~i~i~d~~~-~~~  125 (342)
                      +++.+.+-++      ..+++.-.|++.|+.+.+......+ -+.+.|.         ..++ .++..|.-.|-+- +..
T Consensus       478 dssli~~dg~------~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNK  550 (776)
T COG5167         478 DSSLIYLDGG------ERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNK  550 (776)
T ss_pred             CcceEEecCC------CcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCc
Confidence            4455555444      4678888899999999998877766 4555543         2233 3366665555532 211


Q ss_pred             eeEEeCC--CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcE
Q 019349          126 LDTIDTV--PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTI  203 (342)
Q Consensus       126 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~  203 (342)
                      +...+..  .......+... ...-++|.++  ..|-|++||--.......+++....|..|..+.+|.+|+..+.. . 
T Consensus       551 i~v~esKdY~tKn~Fss~~t-TesGyIa~as--~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-y-  625 (776)
T COG5167         551 IKVVESKDYKTKNKFSSGMT-TESGYIAAAS--RKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-Y-  625 (776)
T ss_pred             eeeeeehhcccccccccccc-ccCceEEEec--CCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-e-
Confidence            1111100  00001111111 1234888887  57999999965444445577888899999999999987777654 3 


Q ss_pred             EEEEEcC
Q 019349          204 IRVFLVS  210 (342)
Q Consensus       204 irlwd~~  210 (342)
                      +-+-|++
T Consensus       626 llL~d~~  632 (776)
T COG5167         626 LLLTDVP  632 (776)
T ss_pred             EEEEecc
Confidence            4477775

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.92  E-value=0.079  Score=53.03  Aligned_cols=70  Identities=14%  Similarity=0.118  Sum_probs=50.8

Q ss_pred             CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          189 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       189 ~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      --+..++.|++.|.+ -.+|+... .-.-.+......+|.+++|+.||+   +++.|-.+|.|.+||+.+++..+
T Consensus        97 ~~~~~ivi~Ts~ghv-l~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~---~l~~G~~~G~V~v~D~~~~k~l~  166 (1206)
T KOG2079|consen   97 IVVVPIVIGTSHGHV-LLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGS---LLLAGLGDGHVTVWDMHRAKILK  166 (1206)
T ss_pred             eeeeeEEEEcCchhh-hhhhhhcc-cchhhcCCccCCcceeeEecCCCc---eeccccCCCcEEEEEccCCccee
Confidence            345678888888886 48887542 111111222345799999999999   99999999999999998876543

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.87  E-value=0.14  Score=42.33  Aligned_cols=106  Identities=14%  Similarity=0.035  Sum_probs=64.1

Q ss_pred             EEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeE-EEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCcee
Q 019349          149 FLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAA-IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST  226 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~-i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~  226 (342)
                      -+++++  .+|.|.+|...... .......-...|.+ |.--.++.+..+++.||. ||.|++.-.+.+... .++....
T Consensus        72 ~~~vG~--~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~-ir~~n~~p~k~~g~~-g~h~~~~  147 (238)
T KOG2444|consen   72 KLMVGT--SDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGR-IRACNIKPNKVLGYV-GQHNFES  147 (238)
T ss_pred             eEEeec--ccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCc-eeeeccccCceeeee-ccccCCC
Confidence            444444  58999999876221 11111111233333 333456678999999997 699999877765543 2222133


Q ss_pred             EEEEEEecCCCcccEEEEE--eCCCcEEEEecCCCCC
Q 019349          227 IFSLSFGQSMQFQDILVAT--SSSGSLHVFSPGFAIN  261 (342)
Q Consensus       227 v~~l~fs~d~~~~~~l~~~--s~dg~i~vwd~~~~~~  261 (342)
                      +..+..+..++   +|+.+  |.|..++.|+++....
T Consensus       148 ~e~~ivv~sd~---~i~~a~~S~d~~~k~W~ve~~~d  181 (238)
T KOG2444|consen  148 GEELIVVGSDE---FLKIADTSHDRVLKKWNVEKIKD  181 (238)
T ss_pred             cceeEEecCCc---eEEeeccccchhhhhcchhhhhc
Confidence            44444455555   67777  8888888888876543

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=94.79  E-value=0.047  Score=53.60  Aligned_cols=160  Identities=13%  Similarity=0.183  Sum_probs=81.5

Q ss_pred             cCCceEEEEEcCCe-EEE-EECCeEEEEECC--CCceeeEE----eCC-CCCceEEEEee-CCCccEEEEeCCCCccEEE
Q 019349           93 FLTSILAVRLNKKR-LVI-VLREKTYIYDAN--TLAILDTI----DTV-PNLKGLCAFSP-SLNACFLAVPASTTKGSVL  162 (342)
Q Consensus        93 ~~~~v~~i~~~~~~-~~~-~~d~~i~i~d~~--~~~~~~~~----~~~-~~~~~~~~~~~-~~~~~~l~~~~~~~~g~i~  162 (342)
                      +++.+..+.|-... --. -.-+...+|++.  .|+.+..+    .++ .++...+..++ -++..++.+..  .+|+|+
T Consensus       131 f~G~v~dl~fah~~~pk~~~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~--~~~~i~  208 (1283)
T KOG1916|consen  131 FPGGVGDLQFAHTKCPKGRRLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGL--KGGEIR  208 (1283)
T ss_pred             CCCCcccccccccCChHHHHHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeecc--CCCcee
Confidence            45566666663211 000 113567888774  34333222    111 11222332232 23445665554  578888


Q ss_pred             EEEccCCceeEEEecccCCeeEEE-----------ECCCCCEEEEEeCCCcEEEEEEcC-CC----eeEEEeccCcCcee
Q 019349          163 VYNVMELHSHCEIDAHQAPLAAIV-----------LSSNGMYIATASEQGTIIRVFLVS-EA----TKSYSFRRGTYPST  226 (342)
Q Consensus       163 iwd~~~~~~~~~~~~h~~~v~~i~-----------~s~dg~~lat~s~dg~~irlwd~~-~~----~~~~~~~~~~~~~~  226 (342)
                      +....+... ..+.+|...+..++           +||||+.+|+++.||. ++.|.+. +|    .++.+++.+.....
T Consensus       209 lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~-v~f~Qiyi~g~~~~rclhewkphd~~p~  286 (1283)
T KOG1916|consen  209 LLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGS-VGFYQIYITGKIVHRCLHEWKPHDKHPR  286 (1283)
T ss_pred             EeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCc-cceeeeeeeccccHhhhhccCCCCCCCc
Confidence            866544322 33445776655543           5999999999999997 4777653 23    34455544432223


Q ss_pred             EEEEEEecCCC------cccEEEEEeCCC-cEEEEecC
Q 019349          227 IFSLSFGQSMQ------FQDILVATSSSG-SLHVFSPG  257 (342)
Q Consensus       227 v~~l~fs~d~~------~~~~l~~~s~dg-~i~vwd~~  257 (342)
                      |..+ |+....      +=-+++++++-| .+++|.-.
T Consensus       287 vC~l-c~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a  323 (1283)
T KOG1916|consen  287 VCWL-CHKQEILVVSIGKWVLRITTTDVNREEKFWAEA  323 (1283)
T ss_pred             eeee-eccccccCCccceeEEEEecccCCcceeEeecc
Confidence            4444 432210      001445555544 48888643

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.75  E-value=3.1  Score=37.72  Aligned_cols=232  Identities=14%  Similarity=0.098  Sum_probs=114.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEE-EEe------------------eCCEEEEEEcCCCCeEEEEcCC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCY-ERA------------------VGAFSIVEMLYSSSLLAIVGAG   67 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~-~~~------------------~~~~~~~~~~~~~~~~~~~~~g   67 (342)
                      ...+....|||||+.+|-..++.+.+++..+++... +..                  .+.-..+.+.++++.+++..-.
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVRDNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEETTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEecCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence            356788999999999999888888888877663321 110                  1122345566666666543321


Q ss_pred             C-----------------CC----------CC--CCCeEEEEECCCCcEEE-EEe-----cCCceEEEEEcCCeE--EEE
Q 019349           68 E-----------------QP----------SL--SPRRLCLFNTTTGTALR-ELN-----FLTSILAVRLNKKRL--VIV  110 (342)
Q Consensus        68 ~-----------------~~----------~~--~d~~i~iwd~~~~~~~~-~~~-----~~~~v~~i~~~~~~~--~~~  110 (342)
                      .                 .|          ..  ..-.+.++|+.+++... ...     ....+..+.|.++..  ++.
T Consensus       122 ~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~  201 (353)
T PF00930_consen  122 EREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQ  201 (353)
T ss_dssp             -TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEE
T ss_pred             CcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEE
Confidence            0                 00          00  11236667877766431 111     122567778866544  332


Q ss_pred             E----CC--eEEEEECCCCceeeEEeC-CC---CCceEEEEe-eCCCccEEEEeCCCCccEEEEEEccCCceeEEEeccc
Q 019349          111 L----RE--KTYIYDANTLAILDTIDT-VP---NLKGLCAFS-PSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ  179 (342)
Q Consensus       111 ~----d~--~i~i~d~~~~~~~~~~~~-~~---~~~~~~~~~-~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~  179 (342)
                      .    .+  .+.+.|..+++....... ..   .......+. +.++ .++.....+.-..|.+++...+. ...+....
T Consensus       202 ~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~-~~l~~s~~~G~~hly~~~~~~~~-~~~lT~G~  279 (353)
T PF00930_consen  202 WLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGN-EFLWISERDGYRHLYLYDLDGGK-PRQLTSGD  279 (353)
T ss_dssp             EEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSS-EEEEEEETTSSEEEEEEETTSSE-EEESS-SS
T ss_pred             EcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCC-EEEEEEEcCCCcEEEEEcccccc-eeccccCc
Confidence            2    22  566778876643222211 11   111222222 2322 33333332223345555665554 33555555


Q ss_pred             CCeeE-EEECCCCCEEE-EEeCCC--cEEEEE--EcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe
Q 019349          180 APLAA-IVLSSNGMYIA-TASEQG--TIIRVF--LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       180 ~~v~~-i~~s~dg~~la-t~s~dg--~~irlw--d~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s  246 (342)
                      -.|+. +.++++++.|. +|..++  . -.||  ++..+..+..+.......  ..+.|||+++   +++...
T Consensus       280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~-r~lY~v~~~~~~~~~~LT~~~~~~--~~~~~Spdg~---y~v~~~  346 (353)
T PF00930_consen  280 WEVTSILGWDEDNNRIYFTANGDNPGE-RHLYRVSLDSGGEPKCLTCEDGDH--YSASFSPDGK---YYVDTY  346 (353)
T ss_dssp             S-EEEEEEEECTSSEEEEEESSGGTTS-BEEEEEETTETTEEEESSTTSSTT--EEEEE-TTSS---EEEEEE
T ss_pred             eeecccceEcCCCCEEEEEecCCCCCc-eEEEEEEeCCCCCeEeccCCCCCc--eEEEECCCCC---EEEEEE
Confidence            66754 67888877665 444322  2 1344  455234445554332221  6899999998   665543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=94.56  E-value=1.3  Score=43.12  Aligned_cols=110  Identities=20%  Similarity=0.147  Sum_probs=62.4

Q ss_pred             EEEEeeCCCccEEEEeCC----------CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE-
Q 019349          138 LCAFSPSLNACFLAVPAS----------TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV-  206 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~----------~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl-  206 (342)
                      ...-+++|++..+++...          ...+.+.+.++..++...   .....|..+.|||||..||.-. +|++ .+ 
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v-~Va  473 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKV-YLA  473 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEE-EEE
Confidence            444556666555554421          123445555555444322   3356799999999999988876 4654 35 


Q ss_pred             --EEcCCCe-eE---EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          207 --FLVSEAT-KS---YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       207 --wd~~~~~-~~---~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                        -....|+ .+   .++... ....+.+++|.+++.    |+++..++...+|.+.
T Consensus       474 ~Vvr~~~G~~~l~~~~~l~~~-l~~~~~~l~W~~~~~----L~V~~~~~~~~v~~v~  525 (591)
T PRK13616        474 VVEQTEDGQYALTNPREVGPG-LGDTAVSLDWRTGDS----LVVGRSDPEHPVWYVN  525 (591)
T ss_pred             EEEeCCCCceeecccEEeecc-cCCccccceEecCCE----EEEEecCCCCceEEEe
Confidence              4444554 11   111111 112357899999997    4566666655666654

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=94.38  E-value=4.2  Score=37.54  Aligned_cols=196  Identities=12%  Similarity=0.087  Sum_probs=89.5

Q ss_pred             CeEEEEcCCCCCCCCCCeEEEEECCCC----cEEEEEec----C----CceEEEEEcCCe-EEEEE----C----CeEEE
Q 019349           59 SLLAIVGAGEQPSLSPRRLCLFNTTTG----TALRELNF----L----TSILAVRLNKKR-LVIVL----R----EKTYI  117 (342)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~----~~~~~~~~----~----~~v~~i~~~~~~-~~~~~----d----~~i~i  117 (342)
                      +++++-+-      ..+.|.|.|+.+.    +....++.    .    +....+..-+++ +++..    +    +.+.+
T Consensus        88 r~Li~PgL------~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~l  161 (461)
T PF05694_consen   88 RYLILPGL------RSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVL  161 (461)
T ss_dssp             -EEEEEBT------TT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEE
T ss_pred             CcEEeeee------ccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEE
Confidence            45555543      5789999998743    23333431    0    111223333444 44433    1    36778


Q ss_pred             EECCCCceeeEEeCCCCC-ceEEEEeeCCCccEEEEeCCC------------------CccEEEEEEccCCceeEEEecc
Q 019349          118 YDANTLAILDTIDTVPNL-KGLCAFSPSLNACFLAVPAST------------------TKGSVLVYNVMELHSHCEIDAH  178 (342)
Q Consensus       118 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~------------------~~g~i~iwd~~~~~~~~~~~~h  178 (342)
                      +|-++.......+..... ..-..+-..|....++++.-.                  ...++.+||+.+.+.++++.--
T Consensus       162 lD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg  241 (461)
T PF05694_consen  162 LDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG  241 (461)
T ss_dssp             E-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred             EcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence            888777777766553321 222334444544455554200                  2468999999999999888643


Q ss_pred             c--CCeeEEEECC--CCCE-EEEEeCCCcEEEEEEcCCCe----eEEEeccC----c-----------CceeEEEEEEec
Q 019349          179 Q--APLAAIVLSS--NGMY-IATASEQGTIIRVFLVSEAT----KSYSFRRG----T-----------YPSTIFSLSFGQ  234 (342)
Q Consensus       179 ~--~~v~~i~~s~--dg~~-lat~s~dg~~irlwd~~~~~----~~~~~~~~----~-----------~~~~v~~l~fs~  234 (342)
                      .  .....|.|..  +..+ ++.+.-.+++.++|....++    ++.++...    .           -+.-|+.|.+|.
T Consensus       242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSl  321 (461)
T PF05694_consen  242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISL  321 (461)
T ss_dssp             TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-T
T ss_pred             CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEcc
Confidence            2  2355677754  4444 33333444555555545553    22222211    0           023479999999


Q ss_pred             CCCcccEEEEEe-CCCcEEEEecCCCCCCC
Q 019349          235 SMQFQDILVATS-SSGSLHVFSPGFAINQR  263 (342)
Q Consensus       235 d~~~~~~l~~~s-~dg~i~vwd~~~~~~~~  263 (342)
                      |.+   +|..+. .+|.|+.||+..+..++
T Consensus       322 DDr---fLYvs~W~~GdvrqYDISDP~~Pk  348 (461)
T PF05694_consen  322 DDR---FLYVSNWLHGDVRQYDISDPFNPK  348 (461)
T ss_dssp             TS----EEEEEETTTTEEEEEE-SSTTS-E
T ss_pred             CCC---EEEEEcccCCcEEEEecCCCCCCc
Confidence            999   666655 58999999999987765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.19  E-value=2.7  Score=34.62  Aligned_cols=156  Identities=9%  Similarity=0.058  Sum_probs=89.0

Q ss_pred             CCCeEEEEECCCCcEEEEEecCC-ce--EEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349           73 SPRRLCLFNTTTGTALRELNFLT-SI--LAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~-~v--~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (342)
                      ....|++||+.+|+.+.+..... .+  -.+.-.++.+...+  ++....||..+.+.+..+.-...   -.+++.+.. 
T Consensus        66 g~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~Ge---GWgLt~d~~-  141 (262)
T COG3823          66 GFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGE---GWGLTSDDK-  141 (262)
T ss_pred             ccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCc---ceeeecCCc-
Confidence            36789999999999998876652 22  23444566666666  88999999988877766643322   344554433 


Q ss_pred             cEEEEeCCCCccEEEEEEccCCceeEEEec--ccC---CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc--
Q 019349          148 CFLAVPASTTKGSVLVYNVMELHSHCEIDA--HQA---PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR--  220 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~--h~~---~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~--  220 (342)
                       .|..+.  ...+++.-|.++.....++.-  ...   .++-+.| -||...|--=.+.++. ..|..+|+.+.-+..  
T Consensus       142 -~Limsd--GsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~-VdG~lyANVw~t~~I~-rI~p~sGrV~~widlS~  216 (262)
T COG3823         142 -NLIMSD--GSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEW-VDGELYANVWQTTRIA-RIDPDSGRVVAWIDLSG  216 (262)
T ss_pred             -ceEeeC--CceEEEecCHHHhhhcceEEEEECCeecccccceee-eccEEEEeeeeecceE-EEcCCCCcEEEEEEccC
Confidence             344433  234566666655443333221  112   2333444 2566666555554543 456677765543321  


Q ss_pred             --------CcCceeEEEEEEecCCC
Q 019349          221 --------GTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       221 --------~~~~~~v~~l~fs~d~~  237 (342)
                              ..+....+.+|+-|++.
T Consensus       217 L~~~~~~~~~~~nvlNGIA~~~~~~  241 (262)
T COG3823         217 LLKELNLDKSNDNVLNGIAHDPQQD  241 (262)
T ss_pred             CchhcCccccccccccceeecCcCC
Confidence                    11122367889888874

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.13  E-value=3  Score=40.59  Aligned_cols=72  Identities=14%  Similarity=0.097  Sum_probs=50.0

Q ss_pred             CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe--cCCCcccEEEEEeCCCcEEEEec
Q 019349          180 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG--QSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       180 ~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs--~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      .....+.-|.- +.+|.-.++++.+.|||.+.+...++-.- .....|.++.|.  ||++   .+++.+-.+.|.+|.-
T Consensus        30 ~~~~li~gss~-~k~a~V~~~~~~LtIWD~~~~~lE~~~~f-~~~~~I~dLDWtst~d~q---siLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   30 SNPSLISGSSI-KKIAVVDSSRSELTIWDTRSGVLEYEESF-SEDDPIRDLDWTSTPDGQ---SILAVGFPHHVLLYTQ  103 (631)
T ss_pred             CCcceEeeccc-CcEEEEECCCCEEEEEEcCCcEEEEeeee-cCCCceeeceeeecCCCC---EEEEEEcCcEEEEEEc
Confidence            34555656653 44666677777789999999886554322 224569999985  6777   6777778889999864

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=93.82  E-value=4  Score=38.91  Aligned_cols=144  Identities=11%  Similarity=0.112  Sum_probs=79.1

Q ss_pred             CceEEEEEcCCeEEEEE-----CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC-----ccEEEEeCCCCccEEEEE
Q 019349           95 TSILAVRLNKKRLVIVL-----REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN-----ACFLAVPASTTKGSVLVY  164 (342)
Q Consensus        95 ~~v~~i~~~~~~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~~~g~i~iw  164 (342)
                      +++.+++|.....++.+     .+.+++=   +.+.+..|+      -++++++.|-     -.+||..-   ...|.||
T Consensus        20 HPvhGlaWTDGkqVvLT~L~l~~gE~kfG---ds~viGqFE------hV~GlsW~P~~~~~~paLLAVQH---kkhVtVW   87 (671)
T PF15390_consen   20 HPVHGLAWTDGKQVVLTDLQLHNGEPKFG---DSKVIGQFE------HVHGLSWAPPCTADTPALLAVQH---KKHVTVW   87 (671)
T ss_pred             ccccceEecCCCEEEEEeeeeeCCccccC---CccEeeccc------eeeeeeecCcccCCCCceEEEec---cceEEEE
Confidence            36777777544333332     3343332   223344442      2555666553     24677653   5789999


Q ss_pred             Ecc-----CCceeEEEeccc-C--C--eeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee--EEEeccCcCceeEEEEEE
Q 019349          165 NVM-----ELHSHCEIDAHQ-A--P--LAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRRGTYPSTIFSLSF  232 (342)
Q Consensus       165 d~~-----~~~~~~~~~~h~-~--~--v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~--~~~~~~~~~~~~v~~l~f  232 (342)
                      .+.     +.+.+..-..+- .  |  -..+.|+|....|+.=..+..-| +++++....  ...+.   ..+.|.|.+|
T Consensus        88 qL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV-~~sV~~d~srVkaDi~---~~G~IhCACW  163 (671)
T PF15390_consen   88 QLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSV-LPSVHCDSSRVKADIK---TSGLIHCACW  163 (671)
T ss_pred             EeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeE-eeeeeeCCceEEEecc---CCceEEEEEe
Confidence            984     223222221111 1  1  12356999888777655444434 677764332  22231   2456999999


Q ss_pred             ecCCCcccEEEEEeCC-CcEEEEecC
Q 019349          233 GQSMQFQDILVATSSS-GSLHVFSPG  257 (342)
Q Consensus       233 s~d~~~~~~l~~~s~d-g~i~vwd~~  257 (342)
                      .+||+   .|+++-.. =.-+|||-.
T Consensus       164 T~DG~---RLVVAvGSsLHSyiWd~~  186 (671)
T PF15390_consen  164 TKDGQ---RLVVAVGSSLHSYIWDSA  186 (671)
T ss_pred             cCcCC---EEEEEeCCeEEEEEecCc
Confidence            99998   77766433 346788743

>PHA03098 kelch-like protein; Provisional

Probab=93.81  E-value=6.7  Score=37.82  Aligned_cols=190  Identities=8%  Similarity=0.065  Sum_probs=85.0

Q ss_pred             CeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEE--C-----CeEEEEECCCCceeeEE
Q 019349           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R-----EKTYIYDANTLAILDTI  129 (342)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~--d-----~~i~i~d~~~~~~~~~~  129 (342)
                      +.+.++||........+.+..+|..+++....-..+.  .-.++....+.+++.+  +     +.+..||..+.+=.. .
T Consensus       295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~-~  373 (534)
T PHA03098        295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWRE-E  373 (534)
T ss_pred             CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceee-C
Confidence            4555555532211123468889988877643222111  1122333345555554  1     357778876643111 1


Q ss_pred             eCCCCCc-eEEEEeeCCCccEEEEeCCCCc----cEEEEEEccCCce--eEEEecccCCeeEEEECCCCCEEEEEeCCCc
Q 019349          130 DTVPNLK-GLCAFSPSLNACFLAVPASTTK----GSVLVYNVMELHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQGT  202 (342)
Q Consensus       130 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~----g~i~iwd~~~~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~  202 (342)
                      ...+.+. ...+...  ++...+.+|...+    ..+..||..+.+=  +..++...... ++ ...++...+.|+.++.
T Consensus       374 ~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~-~~-~~~~~~iyv~GG~~~~  449 (534)
T PHA03098        374 PPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGG-CA-IYHDGKIYVIGGISYI  449 (534)
T ss_pred             CCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCc-eE-EEECCEEEEECCccCC
Confidence            1111111 1222222  3445566663111    4688899876531  11111111111 22 2235667777764321


Q ss_pred             -------EEEEEEcCCCeeEEEeccCcC-ceeEEEEEEecCCCcccEEEEEeCC-----CcEEEEecCCC
Q 019349          203 -------IIRVFLVSEATKSYSFRRGTY-PSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGFA  259 (342)
Q Consensus       203 -------~irlwd~~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~~~l~~~s~d-----g~i~vwd~~~~  259 (342)
                             .+..||..+.+-.. +..... ......+.  -+++   +++.|+.+     ++|.+||.++.
T Consensus       450 ~~~~~~~~v~~yd~~~~~W~~-~~~~~~~r~~~~~~~--~~~~---iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKWTE-LSSLNFPRINASLCI--FNNK---IYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCCcccceEEEecCCCCceee-CCCCCcccccceEEE--ECCE---EEEEcCCcCCcccceeEEEeCCCC
Confidence                   14678887664321 111000 11111122  2566   67777654     46788886643

>PHA02713 hypothetical protein; Provisional

Probab=93.78  E-value=7  Score=37.96  Aligned_cols=189  Identities=7%  Similarity=0.023  Sum_probs=88.9

Q ss_pred             CCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEE--C-----CeEEEEECCCCc--ee
Q 019349           58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R-----EKTYIYDANTLA--IL  126 (342)
Q Consensus        58 ~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~--d-----~~i~i~d~~~~~--~~  126 (342)
                      .+.+.++||-......-+.+..+|..+++....-..+.  .-.+++...+.+++.+  +     ..+..||..+.+  .+
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~  382 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML  382 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence            34555555521111123568889988876432211111  1123334455555544  2     257888876542  11


Q ss_pred             eEEeCCCCCceEEEEeeCCCccEEEEeCCCC---------------------ccEEEEEEccCCc--eeEEEecccCCee
Q 019349          127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTT---------------------KGSVLVYNVMELH--SHCEIDAHQAPLA  183 (342)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------------~g~i~iwd~~~~~--~~~~~~~h~~~v~  183 (342)
                      ..+....  ....+...  ++...+.+|.+.                     -..+..||..+.+  .+..+........
T Consensus       383 ~~mp~~r--~~~~~~~~--~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~  458 (557)
T PHA02713        383 PDMPIAL--SSYGMCVL--DQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG  458 (557)
T ss_pred             CCCCccc--ccccEEEE--CCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCc
Confidence            1111111  11112222  345556666421                     1357788877653  2222211111111


Q ss_pred             EEEECCCCCEEEEEeCCC-----cEEEEEEcCC-Ce--eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC--cEEE
Q 019349          184 AIVLSSNGMYIATASEQG-----TIIRVFLVSE-AT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG--SLHV  253 (342)
Q Consensus       184 ~i~~s~dg~~lat~s~dg-----~~irlwd~~~-~~--~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg--~i~v  253 (342)
                      .++  -+|+..+.|+.++     ..+..||..+ .+  .+..+...  ......+++  +++   +.++|+.++  ++..
T Consensus       459 ~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~--r~~~~~~~~--~~~---iyv~Gg~~~~~~~e~  529 (557)
T PHA02713        459 VVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR--LSALHTILH--DNT---IMMLHCYESYMLQDT  529 (557)
T ss_pred             EEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc--cccceeEEE--CCE---EEEEeeecceeehhh
Confidence            222  3567777776542     2245788876 33  22222211  111222222  567   888998888  6777


Q ss_pred             EecCCC
Q 019349          254 FSPGFA  259 (342)
Q Consensus       254 wd~~~~  259 (342)
                      ||+.+.
T Consensus       530 yd~~~~  535 (557)
T PHA02713        530 FNVYTY  535 (557)
T ss_pred             cCcccc
Confidence            776654

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=93.19  E-value=11  Score=38.17  Aligned_cols=145  Identities=16%  Similarity=0.127  Sum_probs=85.0

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCceE----------------E-EEEcCCeEEEEE-----------CCeEEEEECCCCc
Q 019349           73 SPRRLCLFNTTTGTALRELNFLTSIL----------------A-VRLNKKRLVIVL-----------REKTYIYDANTLA  124 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~~v~----------------~-i~~~~~~~~~~~-----------d~~i~i~d~~~~~  124 (342)
                      .|+.|.-.|.++|+....+...+.|.                + -.+.++.+++..           .+.|+-+|.++++
T Consensus       268 ~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk  347 (764)
T TIGR03074       268 SDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA  347 (764)
T ss_pred             CCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc
Confidence            48889999999999987765433221                0 112344555542           3679999999999


Q ss_pred             eeeEEeCCCC-------Cce--------E-EEEeeCCCccEEEEeC----------------CCCccEEEEEEccCCcee
Q 019349          125 ILDTIDTVPN-------LKG--------L-CAFSPSLNACFLAVPA----------------STTKGSVLVYNVMELHSH  172 (342)
Q Consensus       125 ~~~~~~~~~~-------~~~--------~-~~~~~~~~~~~l~~~~----------------~~~~g~i~iwd~~~~~~~  172 (342)
                      ++..+.....       ...        . ...+.+++...+..+.                ....+.|.-.|.++++..
T Consensus       348 l~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~  427 (764)
T TIGR03074       348 LVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKER  427 (764)
T ss_pred             EeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceE
Confidence            9888754210       000        0 1222233222222210                012466777899999887


Q ss_pred             EEEec-cc--------CCeeEEEECC-CCC---EEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349          173 CEIDA-HQ--------APLAAIVLSS-NGM---YIATASEQGTIIRVFLVSEATKSYSF  218 (342)
Q Consensus       173 ~~~~~-h~--------~~v~~i~~s~-dg~---~lat~s~dg~~irlwd~~~~~~~~~~  218 (342)
                      -.++. |.        .+..-+.+.. +|+   .++.++.+|.+ .+.|-++|+.+...
T Consensus       428 W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~-~vlDr~tG~~l~~~  485 (764)
T TIGR03074       428 WVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQI-YVLDRRTGEPIVPV  485 (764)
T ss_pred             EEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEE-EEEECCCCCEEeec
Confidence            66653 21        1122233433 664   78899999975 69999999987653

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=93.02  E-value=5.2  Score=39.02  Aligned_cols=94  Identities=13%  Similarity=0.145  Sum_probs=61.2

Q ss_pred             CccEEEEEEccCCceeEEEe-cccCCeeEEEEC--CCCCEEEEEeCCCcEEEEEEcC-----C----CeeEEEecc-CcC
Q 019349          157 TKGSVLVYNVMELHSHCEID-AHQAPLAAIVLS--SNGMYIATASEQGTIIRVFLVS-----E----ATKSYSFRR-GTY  223 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s--~dg~~lat~s~dg~~irlwd~~-----~----~~~~~~~~~-~~~  223 (342)
                      ...++.|||.+.+.....-. ...++|..+.|.  |||+.+++-|-...+ .++--.     +    -..+.++.- ...
T Consensus        49 ~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v-~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T  127 (631)
T PF12234_consen   49 SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHV-LLYTQLRYDYTNKGPSWAPIRKIDISSHT  127 (631)
T ss_pred             CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEE-EEEEccchhhhcCCcccceeEEEEeecCC
Confidence            35689999998876433222 346789999885  689888888887775 466431     1    123333321 123


Q ss_pred             ceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349          224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      +.+|.+..|-++|.    |++|+ .+.+.|+|=
T Consensus       128 ~h~Igds~Wl~~G~----LvV~s-GNqlfv~dk  155 (631)
T PF12234_consen  128 PHPIGDSIWLKDGT----LVVGS-GNQLFVFDK  155 (631)
T ss_pred             CCCccceeEecCCe----EEEEe-CCEEEEECC
Confidence            45689999999996    55554 357888873

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=92.95  E-value=7.2  Score=35.59  Aligned_cols=180  Identities=16%  Similarity=0.174  Sum_probs=97.4

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCceEEE------EEcCCe--EEEEEC-----CeEEEEECCC-CceeeEEeCCCC----
Q 019349           73 SPRRLCLFNTTTGTALRELNFLTSILAV------RLNKKR--LVIVLR-----EKTYIYDANT-LAILDTIDTVPN----  134 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~~v~~i------~~~~~~--~~~~~d-----~~i~i~d~~~-~~~~~~~~~~~~----  134 (342)
                      ..+-+.++|+. |+.+..+.. +....+      .+....  ++++++     ++|++|.+.. ...+..+.....    
T Consensus        76 K~~GL~VYdL~-Gk~lq~~~~-Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~~~p~~~  153 (381)
T PF02333_consen   76 KKGGLYVYDLD-GKELQSLPV-GRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDPAAPIAT  153 (381)
T ss_dssp             TTTEEEEEETT-S-EEEEE-S-S-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBTTC-EE-
T ss_pred             CCCCEEEEcCC-CcEEEeecC-CCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCCCccccc
Confidence            46789999985 566666642 333333      344433  345552     4799998753 123333322111    


Q ss_pred             ----CceEEEEeeCCCccEEEEeCCCCccEEEEEEcc---CC----ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcE
Q 019349          135 ----LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM---EL----HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTI  203 (342)
Q Consensus       135 ----~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~---~~----~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~  203 (342)
                          +.++|-.....++.+.++... .+|.+..|.+.   .+    +.++.|.. .+.+..|+......+|..|=++-- 
T Consensus       154 ~~~e~yGlcly~~~~~g~~ya~v~~-k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~G-  230 (381)
T PF02333_consen  154 DLSEPYGLCLYRSPSTGALYAFVNG-KDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVG-  230 (381)
T ss_dssp             SSSSEEEEEEEE-TTT--EEEEEEE-TTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTE-
T ss_pred             ccccceeeEEeecCCCCcEEEEEec-CCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEEecCccE-
Confidence                223333333334555555443 57999998874   22    35666765 347889999998889999988865 


Q ss_pred             EEEEEcCC-----CeeEEEeccCcCceeEEEEEEe--cCCCcccEEEEEe-CCCcEEEEecCCC
Q 019349          204 IRVFLVSE-----ATKSYSFRRGTYPSTIFSLSFG--QSMQFQDILVATS-SSGSLHVFSPGFA  259 (342)
Q Consensus       204 irlwd~~~-----~~~~~~~~~~~~~~~v~~l~fs--~d~~~~~~l~~~s-~dg~i~vwd~~~~  259 (342)
                      |.-|+...     ++.+.........+.|-.|++-  ++++  .||+++| .+++..||+.+.+
T Consensus       231 IW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~--gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  231 IWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGK--GYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC---EEEEEEEGGGTEEEEEESSTT
T ss_pred             EEEEecCCCCCCcceeeecccccccccCccceEEEecCCCC--eEEEEEcCCCCeEEEEecCCC
Confidence            34566641     2333333222223457777774  3443  2666655 4678999997754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.82  E-value=12  Score=37.80  Aligned_cols=113  Identities=14%  Similarity=0.179  Sum_probs=64.8

Q ss_pred             CCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCc---------eEEEEe-------------eCCCccEEEEeCCCCccE
Q 019349          104 KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLK---------GLCAFS-------------PSLNACFLAVPASTTKGS  160 (342)
Q Consensus       104 ~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~~-------------~~~~~~~l~~~~~~~~g~  160 (342)
                      .+.+++++ ++.++-.|..+++.+.+++......         ++.-..             +......++...  .|+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T--~Dg~  271 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPT--SDAR  271 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEec--CCCe
Confidence            45556655 6778888888888777764432211         111010             011223555555  5899


Q ss_pred             EEEEEccCCceeEEEecccCCee-------------EEEECC--CCCEEEEEeC----------CCcEEEEEEcCCCeeE
Q 019349          161 VLVYNVMELHSHCEIDAHQAPLA-------------AIVLSS--NGMYIATASE----------QGTIIRVFLVSEATKS  215 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~~~v~-------------~i~~s~--dg~~lat~s~----------dg~~irlwd~~~~~~~  215 (342)
                      +.-.|.++++..-.+.. .+.|.             .+.-+|  .+..++.|+.          +|. |+-+|+++|+++
T Consensus       272 LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~-I~A~Da~TGkl~  349 (764)
T TIGR03074       272 LIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGV-IRAFDVNTGALV  349 (764)
T ss_pred             EEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcE-EEEEECCCCcEe
Confidence            99999999988765532 11110             111112  1345666643          464 689999999999


Q ss_pred             EEecc
Q 019349          216 YSFRR  220 (342)
Q Consensus       216 ~~~~~  220 (342)
                      .++..
T Consensus       350 W~~~~  354 (764)
T TIGR03074       350 WAWDP  354 (764)
T ss_pred             eEEec
Confidence            88753

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=92.71  E-value=8.2  Score=35.69  Aligned_cols=192  Identities=15%  Similarity=0.126  Sum_probs=84.5

Q ss_pred             CCCEEEEEcCCc--EEEEeCCCC----cEEEEEee------CCEE---EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349           18 DNSGFALSTKDG--FKIFDSSTG----RLCYERAV------GAFS---IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus        18 d~~~la~g~~~g--~~v~d~~~~----~~~~~~~~------~~~~---~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      +.++|++.+-.+  +.|+|+.+.    ++....+.      .+..   .+-++++++.++.+=++.++ -..+.+.+.|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G-~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADG-NGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS--S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCC-CCCCcEEEEcC
Confidence            566787776555  566676533    22222211      1111   23345555555544332222 23567888888


Q ss_pred             CCCcEEEEEecCC----ceEEEEEcCCeE-EEEE----------------------CCeEEEEECCCCceeeEEeCCCCC
Q 019349           83 TTGTALRELNFLT----SILAVRLNKKRL-VIVL----------------------REKTYIYDANTLAILDTIDTVPNL  135 (342)
Q Consensus        83 ~~~~~~~~~~~~~----~v~~i~~~~~~~-~~~~----------------------d~~i~i~d~~~~~~~~~~~~~~~~  135 (342)
                      ++.+.+...+...    --.++.+++.+. ++.+                      .+++.+||+...+.++++......
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            8877777665422    234555555432 2221                      258999999999999999876542


Q ss_pred             ceE--EEEeeCCCccEEEEeCCCCccEEEEEEc-cCCc----eeEEEecc-----------------cCCeeEEEECCCC
Q 019349          136 KGL--CAFSPSLNACFLAVPASTTKGSVLVYNV-MELH----SHCEIDAH-----------------QAPLAAIVLSSNG  191 (342)
Q Consensus       136 ~~~--~~~~~~~~~~~l~~~~~~~~g~i~iwd~-~~~~----~~~~~~~h-----------------~~~v~~i~~s~dg  191 (342)
                      ...  +-+..+|+..+=+++.. -.++|..|-- ..++    .+..+..-                 ..-|+.|.+|.|.
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~a-Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCA-LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE---EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CceEEEEecCCCCccceEEEEe-ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence            222  23444554433222111 2345555543 3332    22233211                 1347899999999


Q ss_pred             CEEEEEeC-CCcEEEEEEcCCC
Q 019349          192 MYIATASE-QGTIIRVFLVSEA  212 (342)
Q Consensus       192 ~~lat~s~-dg~~irlwd~~~~  212 (342)
                      ++|..+.. +|. +|.||+...
T Consensus       324 rfLYvs~W~~Gd-vrqYDISDP  344 (461)
T PF05694_consen  324 RFLYVSNWLHGD-VRQYDISDP  344 (461)
T ss_dssp             -EEEEEETTTTE-EEEEE-SST
T ss_pred             CEEEEEcccCCc-EEEEecCCC
Confidence            99988775 565 699999764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=92.60  E-value=8  Score=35.25  Aligned_cols=242  Identities=11%  Similarity=0.019  Sum_probs=107.6

Q ss_pred             EEEEcCCCCEE-EEEcCCcEEEEeCCCCcE--EEEEeeCCEEEEEE--cCCCCeEEEEc---CCCCC------------C
Q 019349           12 FVSFNQDNSGF-ALSTKDGFKIFDSSTGRL--CYERAVGAFSIVEM--LYSSSLLAIVG---AGEQP------------S   71 (342)
Q Consensus        12 ~l~fs~d~~~l-a~g~~~g~~v~d~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~~~---~g~~~------------~   71 (342)
                      ....+|+++.+ .+-..+.++--|+++.+.  +|.....-.....+  ..+...++-+-   ....+            +
T Consensus        85 g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a  164 (386)
T PF14583_consen   85 GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEA  164 (386)
T ss_dssp             T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC
T ss_pred             ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhh
Confidence            34556777776 455666777788888754  45544333332233  22333332111   11110            0


Q ss_pred             CCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC---eEEEEECC-----eEEEEECCC-CceeeEEeCCCCCceEEE-E
Q 019349           72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK---RLVIVLRE-----KTYIYDANT-LAILDTIDTVPNLKGLCA-F  141 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~---~~~~~~d~-----~i~i~d~~~-~~~~~~~~~~~~~~~~~~-~  141 (342)
                      -....|.-.|+++|+....+.-..-+.-+.++|.   .++.|.+|     .-+||-+.. +...+.+..+.. ...+. =
T Consensus       165 ~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~-~e~~gHE  243 (386)
T PF14583_consen  165 RPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME-GESVGHE  243 (386)
T ss_dssp             ---EEEEEEETTT--EEEEEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T-TEEEEEE
T ss_pred             CCCceEEEEECCCCceeEEEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC-Ccccccc
Confidence            1245577888998887666665556666777664   34445532     236776643 333333322222 12221 1


Q ss_pred             eeCCCccEEEEeCC---CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC---------------cE
Q 019349          142 SPSLNACFLAVPAS---TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG---------------TI  203 (342)
Q Consensus       142 ~~~~~~~~l~~~~~---~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg---------------~~  203 (342)
                      -+.+++..+.+-+.   ..+..|.-+|+.+++......  ..+....-.++||+++|-=+.|.               ..
T Consensus       244 fw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~  321 (386)
T PF14583_consen  244 FWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPW  321 (386)
T ss_dssp             EE-TTSS-EEEEEEETTT--EEEEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------E
T ss_pred             cccCCCCEEEEEeecCCCCceEEEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcE
Confidence            23556666655321   135567778888876543222  22345666789999887644442               13


Q ss_pred             EEEEEcCCCeeEE--Ee------ccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          204 IRVFLVSEATKSY--SF------RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       204 irlwd~~~~~~~~--~~------~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      |.+++++.+....  ..      ..+.....=....||||++.  .|..+...|...||-++-
T Consensus       322 i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~--VlF~Sd~~G~~~vY~v~i  382 (386)
T PF14583_consen  322 IYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKW--VLFRSDMEGPPAVYLVEI  382 (386)
T ss_dssp             EEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSE--EEEEE-TTSS-EEEEEE-
T ss_pred             EEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCE--EEEECCCCCCccEEEEeC
Confidence            5678888776421  11      01111100134789999992  455556678888886553

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.56  E-value=6.9  Score=34.42  Aligned_cols=72  Identities=11%  Similarity=0.215  Sum_probs=42.0

Q ss_pred             eeEEEECC---CCCEEEEEeCCCcEEEEEEcCCCe--------------eEEEeccCcCceeEEEEEEecCCCcccEEEE
Q 019349          182 LAAIVLSS---NGMYIATASEQGTIIRVFLVSEAT--------------KSYSFRRGTYPSTIFSLSFGQSMQFQDILVA  244 (342)
Q Consensus       182 v~~i~~s~---dg~~lat~s~dg~~irlwd~~~~~--------------~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~  244 (342)
                      +..++.+|   +|+.|.-..-.+.  ++|.+.+..              .+..+  +........++++++|.   ++.+
T Consensus       130 ~~gial~~~~~d~r~LYf~~lss~--~ly~v~T~~L~~~~~~~~~~~~~~v~~l--G~k~~~s~g~~~D~~G~---ly~~  202 (287)
T PF03022_consen  130 IFGIALSPISPDGRWLYFHPLSSR--KLYRVPTSVLRDPSLSDAQALASQVQDL--GDKGSQSDGMAIDPNGN---LYFT  202 (287)
T ss_dssp             EEEEEE-TTSTTS-EEEEEETT-S--EEEEEEHHHHCSTT--HHH-HHHT-EEE--EE---SECEEEEETTTE---EEEE
T ss_pred             ccccccCCCCCCccEEEEEeCCCC--cEEEEEHHHhhCccccccccccccceec--cccCCCCceEEECCCCc---EEEe
Confidence            66666655   6677777666554  355443211              01111  11112355688899987   8888


Q ss_pred             EeCCCcEEEEecCCCC
Q 019349          245 TSSSGSLHVFSPGFAI  260 (342)
Q Consensus       245 ~s~dg~i~vwd~~~~~  260 (342)
                      --..+.|..|+..++-
T Consensus       203 ~~~~~aI~~w~~~~~~  218 (287)
T PF03022_consen  203 DVEQNAIGCWDPDGPY  218 (287)
T ss_dssp             ECCCTEEEEEETTTSB
T ss_pred             cCCCCeEEEEeCCCCc
Confidence            8899999999987644

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=92.45  E-value=0.55  Score=27.92  Aligned_cols=31  Identities=16%  Similarity=0.188  Sum_probs=23.4

Q ss_pred             CCeeEEEECCCC---CEEEEEeCCCcEEEEEEcCC
Q 019349          180 APLAAIVLSSNG---MYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       180 ~~v~~i~~s~dg---~~lat~s~dg~~irlwd~~~  211 (342)
                      ++|.++.|||+.   .+|+.+-.-|. +.|+|+++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~-vhi~D~R~   34 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGR-VHIVDTRS   34 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCe-EEEEEccc
Confidence            368999999854   47777666666 58999985

It contains a characteristic DLL sequence motif.

>PHA02713 hypothetical protein; Provisional

Probab=92.40  E-value=11  Score=36.55  Aligned_cols=123  Identities=8%  Similarity=0.062  Sum_probs=57.1

Q ss_pred             CeEEEEECCCCcEEEEEecCCc--eEEEEEcCCeEEEEEC--------CeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349           75 RRLCLFNTTTGTALRELNFLTS--ILAVRLNKKRLVIVLR--------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPS  144 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~~--v~~i~~~~~~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  144 (342)
                      ..+..||..+++...--..+.+  -.+++...+.+++++.        +.+..||..+.+-. .+..-..+..-.+++.-
T Consensus       272 ~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~-~~~~m~~~R~~~~~~~~  350 (557)
T PHA02713        272 PCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHV-ELPPMIKNRCRFSLAVI  350 (557)
T ss_pred             CCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEe-eCCCCcchhhceeEEEE
Confidence            4577889888764432222221  1234444566666542        24777887665211 11110111111122222


Q ss_pred             CCccEEEEeCCCC---ccEEEEEEccCCc--eeEEEecccCCeeEEEECCCCCEEEEEeCCC
Q 019349          145 LNACFLAVPASTT---KGSVLVYNVMELH--SHCEIDAHQAPLAAIVLSSNGMYIATASEQG  201 (342)
Q Consensus       145 ~~~~~l~~~~~~~---~g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg  201 (342)
                       ++...+.+|.+.   -..+..||..+.+  .+..+.........+++  +|...+.|+.++
T Consensus       351 -~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~--~g~IYviGG~~~  409 (557)
T PHA02713        351 -DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVL--DQYIYIIGGRTE  409 (557)
T ss_pred             -CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEE--CCEEEEEeCCCc
Confidence             244566666421   1358889987653  22222211111122223  678888887653

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=92.02  E-value=1  Score=37.91  Aligned_cols=30  Identities=20%  Similarity=0.280  Sum_probs=22.1

Q ss_pred             EcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349           54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (342)
Q Consensus        54 ~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~   90 (342)
                      +....++++.++.       ++.+++||+.+++.+..
T Consensus        18 l~~~~~~Ll~iT~-------~G~l~vWnl~~~k~~~~   47 (219)
T PF07569_consen   18 LECNGSYLLAITS-------SGLLYVWNLKKGKAVLP   47 (219)
T ss_pred             EEeCCCEEEEEeC-------CCeEEEEECCCCeeccC
Confidence            4455667666664       79999999999887643

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=91.75  E-value=1.4  Score=25.63  Aligned_cols=33  Identities=9%  Similarity=0.130  Sum_probs=24.2

Q ss_pred             CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC
Q 019349          189 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRG  221 (342)
Q Consensus       189 ~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~  221 (342)
                      |++++|.++......|.++|..+++.+.++..+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg   33 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVG   33 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECC
Confidence            678877776654444679999999888877654

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=91.38  E-value=9.2  Score=33.38  Aligned_cols=157  Identities=17%  Similarity=0.134  Sum_probs=94.5

Q ss_pred             cEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCcee---eEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEE
Q 019349           86 TALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAIL---DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (342)
Q Consensus        86 ~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i  161 (342)
                      ..+..+..+.-+.++.++++..+++- +.-++|.|+.++...   ..+.+.   ....++.-+++  +...+.-  +.-.
T Consensus        78 ~l~~~i~~~~l~~Dv~vse~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~---gyaygv~vsGn--~aYVadl--ddgf  150 (370)
T COG5276          78 VLLSVINARDLFADVRVSEEYVYVADWSSGLRIVDISTPDSPTLIGFLNTD---GYAYGVYVSGN--YAYVADL--DDGF  150 (370)
T ss_pred             ceEEEEehhhhhheeEecccEEEEEcCCCceEEEeccCCCCcceeccccCC---ceEEEEEecCC--EEEEeec--cCcE
Confidence            34556677778899999999999888 568999999876433   333321   22344555554  4333332  3447


Q ss_pred             EEEEccCCce---eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe---eEEEeccCcCceeEEEEEEecC
Q 019349          162 LVYNVMELHS---HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT---KSYSFRRGTYPSTIFSLSFGQS  235 (342)
Q Consensus       162 ~iwd~~~~~~---~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~---~~~~~~~~~~~~~v~~l~fs~d  235 (342)
                      .+.|+.+.+.   ..........-..+++|  |++...+..|+.+ .+-|+.+..   .+.....+   ..++++..+++
T Consensus       151 LivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL-~ivDVSnp~sPvli~~~n~g---~g~~sv~vsdn  224 (370)
T COG5276         151 LIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGL-TIVDVSNPHSPVLIGSYNTG---PGTYSVSVSDN  224 (370)
T ss_pred             EEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCe-EEEEccCCCCCeEEEEEecC---CceEEEEecCC
Confidence            7788865542   23333333334566776  5677777778875 699997653   33332211   14788888877


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCCC
Q 019349          236 MQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       236 ~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      ..   +++...+  -+.+-|...++
T Consensus       225 r~---y~vvy~e--gvlivd~s~~s  244 (370)
T COG5276         225 RA---YLVVYDE--GVLIVDVSGPS  244 (370)
T ss_pred             ee---EEEEccc--ceEEEecCCCC
Confidence            65   5554433  35566665554

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=90.84  E-value=14  Score=34.40  Aligned_cols=130  Identities=15%  Similarity=0.180  Sum_probs=76.3

Q ss_pred             CCCeEEEEECCCCc-----EEEEEecCCceEEEEEcC-------CeEEEEECCeEEEEECCC--Cc----------eeeE
Q 019349           73 SPRRLCLFNTTTGT-----ALRELNFLTSILAVRLNK-------KRLVIVLREKTYIYDANT--LA----------ILDT  128 (342)
Q Consensus        73 ~d~~i~iwd~~~~~-----~~~~~~~~~~v~~i~~~~-------~~~~~~~d~~i~i~d~~~--~~----------~~~~  128 (342)
                      ..+.++|++...+.     .+.+.++..+|..+...+       ..+++..-+++.||.+..  +.          .+.+
T Consensus        45 ~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~~~~L~~~ye  124 (418)
T PF14727_consen   45 YSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGNQYQLELIYE  124 (418)
T ss_pred             cccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCcEEEEEEEEE
Confidence            47999999986543     456677788999887632       244555578999998821  11          1111


Q ss_pred             EeCCCCCceEEEEeeCC-C-ccEEEEeCCCCccEEEEEEccCCceeEEEec--ccCCeeEEEECCCCCEEEEEeCCCcEE
Q 019349          129 IDTVPNLKGLCAFSPSL-N-ACFLAVPASTTKGSVLVYNVMELHSHCEIDA--HQAPLAAIVLSSNGMYIATASEQGTII  204 (342)
Q Consensus       129 ~~~~~~~~~~~~~~~~~-~-~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~--h~~~v~~i~~s~dg~~lat~s~dg~~i  204 (342)
                      ..........+.-.+.+ . ..+++.-+  .||.+.+++-+.......++.  +.+|   +.|.+.-..+++++.+..+ 
T Consensus       125 h~l~~~a~nm~~G~Fgg~~~~~~IcVQS--~DG~L~~feqe~~~f~~~lp~~llPgP---l~Y~~~tDsfvt~sss~~l-  198 (418)
T PF14727_consen  125 HSLQRTAYNMCCGPFGGVKGRDFICVQS--MDGSLSFFEQESFAFSRFLPDFLLPGP---LCYCPRTDSFVTASSSWTL-  198 (418)
T ss_pred             EecccceeEEEEEECCCCCCceEEEEEe--cCceEEEEeCCcEEEEEEcCCCCCCcC---eEEeecCCEEEEecCceeE-
Confidence            11111112222222221 1 34666666  699999999776544444443  3344   5677877788888877553 


Q ss_pred             EEEE
Q 019349          205 RVFL  208 (342)
Q Consensus       205 rlwd  208 (342)
                      .-+.
T Consensus       199 ~~Yk  202 (418)
T PF14727_consen  199 ECYK  202 (418)
T ss_pred             EEec
Confidence            4554

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=90.51  E-value=18  Score=35.26  Aligned_cols=186  Identities=16%  Similarity=0.172  Sum_probs=96.1

Q ss_pred             CeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEE--C------CeEEEEECCCCc--ee
Q 019349           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R------EKTYIYDANTLA--IL  126 (342)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~--d------~~i~i~d~~~~~--~~  126 (342)
                      ..+.++||-.+....-+.+..+|..+++.......+.  .-.+++..++.+++++  +      +.+..||....+  .+
T Consensus       285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~  364 (571)
T KOG4441|consen  285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPV  364 (571)
T ss_pred             CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCceecc
Confidence            4455555532112234789999999886655443332  4456666677777766  4      367888887653  11


Q ss_pred             eEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc-----EEEEEEccCCc--eeEEEecccCCeeEEEECCCCCEEEEEeC
Q 019349          127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG-----SVLVYNVMELH--SHCEIDAHQAPLAAIVLSSNGMYIATASE  199 (342)
Q Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g-----~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~dg~~lat~s~  199 (342)
                      ..+.......+++.+    ++...|.+|.  +|     +|..||..+.+  .+..........-.+.  -+|...+.||.
T Consensus       365 a~M~~~R~~~~v~~l----~g~iYavGG~--dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~--~~g~iYi~GG~  436 (571)
T KOG4441|consen  365 APMNTKRSDFGVAVL----DGKLYAVGGF--DGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAV--LGGKLYIIGGG  436 (571)
T ss_pred             CCccCccccceeEEE----CCEEEEEecc--ccccccccEEEecCCCCcccccCCCCcceeeeEEEE--ECCEEEEEcCc
Confidence            122221111222222    3456667774  33     46778876654  2221111111122222  36788888887


Q ss_pred             CCcE-----EEEEEcCCCeeE--EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc-----EEEEecCCC
Q 019349          200 QGTI-----IRVFLVSEATKS--YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS-----LHVFSPGFA  259 (342)
Q Consensus       200 dg~~-----irlwd~~~~~~~--~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~-----i~vwd~~~~  259 (342)
                      ++..     +..+|..+.+-.  ..+..   +..-..++. -++.   +.+.|+.|+.     |..||.++.
T Consensus       437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~---~R~~~g~a~-~~~~---iYvvGG~~~~~~~~~VE~ydp~~~  501 (571)
T KOG4441|consen  437 DGSSNCLNSVECYDPETNTWTLIAPMNT---RRSGFGVAV-LNGK---IYVVGGFDGTSALSSVERYDPETN  501 (571)
T ss_pred             CCCccccceEEEEcCCCCceeecCCccc---ccccceEEE-ECCE---EEEECCccCCCccceEEEEcCCCC
Confidence            6542     457787766422  22211   111222333 3455   7888888773     666665543

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=90.49  E-value=11  Score=32.53  Aligned_cols=115  Identities=12%  Similarity=0.032  Sum_probs=65.0

Q ss_pred             EEEEeeCCCccEEEEeCC-CCccEEEEEEccCCceeEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE-cCCCee
Q 019349          138 LCAFSPSLNACFLAVPAS-TTKGSVLVYNVMELHSHCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL-VSEATK  214 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~-~~~g~i~iwd~~~~~~~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd-~~~~~~  214 (342)
                      +...+.++++..+|+... +....+.++...  .....+ .+  ..+..-.|+++|...+....+.. .+++. ..+++.
T Consensus        26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~-~~~~~~~~~g~~  100 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGG-VRVVRDSASGTG  100 (253)
T ss_pred             ccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccC--CccccccccCCCCEEEEEcCCCc-eEEEEecCCCcc
Confidence            444455566666655431 023445555433  322222 22  36777789999877766665544 45663 334432


Q ss_pred             E-EEeccCcCceeEEEEEEecCCCcccEEEEEe---CCCcEEEEecCCCC
Q 019349          215 S-YSFRRGTYPSTIFSLSFGQSMQFQDILVATS---SSGSLHVFSPGFAI  260 (342)
Q Consensus       215 ~-~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s---~dg~i~vwd~~~~~  260 (342)
                      . ...........|..+.+||||.   .+|...   .++.|.|=-+....
T Consensus       101 ~~~~v~~~~~~~~I~~l~vSpDG~---RvA~v~~~~~~~~v~va~V~r~~  147 (253)
T PF10647_consen  101 EPVEVDWPGLRGRITALRVSPDGT---RVAVVVEDGGGGRVYVAGVVRDG  147 (253)
T ss_pred             eeEEecccccCCceEEEEECCCCc---EEEEEEecCCCCeEEEEEEEeCC
Confidence            2 1221111112799999999998   888777   35778888776543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.48  E-value=6.6  Score=36.99  Aligned_cols=79  Identities=15%  Similarity=0.234  Sum_probs=51.4

Q ss_pred             CeeEEEECCCCCEEEEEeCCCcEEEEEEc----------CCCeeEEEec---------cCcCceeEEEEEEecCCCcccE
Q 019349          181 PLAAIVLSSNGMYIATASEQGTIIRVFLV----------SEATKSYSFR---------RGTYPSTIFSLSFGQSMQFQDI  241 (342)
Q Consensus       181 ~v~~i~~s~dg~~lat~s~dg~~irlwd~----------~~~~~~~~~~---------~~~~~~~v~~l~fs~d~~~~~~  241 (342)
                      .|..|..|+.|..+|-++.+|-+|  --+          +.|+.....+         .....-.+..++|+|+.-.-..
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~v--MeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h  182 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMV--MELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH  182 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEE--EEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence            366788899999999999999543  322          2332221111         0111123677899998611127


Q ss_pred             EEEEeCCCcEEEEecCCCCC
Q 019349          242 LVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       242 l~~~s~dg~i~vwd~~~~~~  261 (342)
                      |..-++|++|+|||+....+
T Consensus       183 L~iL~sdnviRiy~lS~~te  202 (741)
T KOG4460|consen  183 LVLLTSDNVIRIYSLSEPTE  202 (741)
T ss_pred             EEEEecCcEEEEEecCCcch
Confidence            88889999999999977654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.38  E-value=1.9  Score=35.70  Aligned_cols=42  Identities=24%  Similarity=0.375  Sum_probs=31.8

Q ss_pred             ccEEEEEEccC--CceeEEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349          158 KGSVLVYNVME--LHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ  200 (342)
Q Consensus       158 ~g~i~iwd~~~--~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d  200 (342)
                      ...|.+|++.+  .+...+|.. -+.|..+.++..|++|+|==++
T Consensus        37 g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   37 GCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             CCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEee
Confidence            36799999983  334556654 3789999999999999996443

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=90.37  E-value=12  Score=33.10  Aligned_cols=62  Identities=15%  Similarity=0.200  Sum_probs=44.7

Q ss_pred             cCCCCEEEEEcCCcEEEEeCCC--CcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349           16 NQDNSGFALSTKDGFKIFDSST--GRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus        16 s~d~~~la~g~~~g~~v~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      .-++++|+.|+++|+.+.+...  .+...-.....+..+.+...-+.++++++      ..+.++.+|+.
T Consensus        10 ~~~~~~lL~GTe~Gly~~~~~~~~~~~~kl~~~~~v~q~~v~~~~~lLi~Lsg------k~~~L~~~~L~   73 (302)
T smart00036       10 TCDGKWLLVGTEEGLYVLNISDQPGTLEKLIGRRSVTQIWVLEENNVLLMISG------KKPQLYSHPLS   73 (302)
T ss_pred             ccCCcEEEEEeCCceEEEEcccCCCCeEEecCcCceEEEEEEhhhCEEEEEeC------CcceEEEEEHH
Confidence            3345689999999987777654  34444444567778888888888888876      35569999973

Unpublished observations.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.25  E-value=20  Score=35.39  Aligned_cols=159  Identities=16%  Similarity=0.209  Sum_probs=78.4

Q ss_pred             EEEEEcCCCCe-EEEEcCCCCCCCCCCeEEEEECCCCcEEEE--Ee---cCCceEEEEEcCCeEEEEE-CCeEE-EEECC
Q 019349           50 SIVEMLYSSSL-LAIVGAGEQPSLSPRRLCLFNTTTGTALRE--LN---FLTSILAVRLNKKRLVIVL-REKTY-IYDAN  121 (342)
Q Consensus        50 ~~~~~~~~~~~-~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~--~~---~~~~v~~i~~~~~~~~~~~-d~~i~-i~d~~  121 (342)
                      ..+.|-++.+- ++++.       .+++++++++- |+.+..  +.   ....|..+.+..+++++.. ++++. +.+++
T Consensus        85 ~lI~mgWs~~eeLI~v~-------k~g~v~Vy~~~-ge~ie~~svg~e~~~~~I~ec~~f~~GVavlt~~g~v~~i~~~~  156 (829)
T KOG2280|consen   85 ELIGMGWSDDEELICVQ-------KDGTVHVYGLL-GEFIESNSVGFESQMSDIVECRFFHNGVAVLTVSGQVILINGVE  156 (829)
T ss_pred             CeeeecccCCceEEEEe-------ccceEEEeecc-hhhhcccccccccccCceeEEEEecCceEEEecCCcEEEEcCCC
Confidence            45566665533 33333       48999999974 333332  21   2235666666667776665 56554 44444


Q ss_pred             CCceeeEEeC-CCCC---ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc-eeEEEecccCCeeEEEECCCCCEEEE
Q 019349          122 TLAILDTIDT-VPNL---KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVLSSNGMYIAT  196 (342)
Q Consensus       122 ~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~s~dg~~lat  196 (342)
                      .. .++++.. +.+.   ..-.++.++-....+.-... ..| ..++...... ....+....+.+..|.+||+.++||-
T Consensus       157 ~~-~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~-~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laL  233 (829)
T KOG2280|consen  157 EP-KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDV-AVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLAL  233 (829)
T ss_pred             cc-hhhhCCCCCCccCCCcceeEecCCCcceeEEeech-hhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEE
Confidence            32 2222221 1111   11112222111111111110 000 0111111111 11122222355788999999999999


Q ss_pred             EeCCCcEEEEEEcCCCeeEEEecc
Q 019349          197 ASEQGTIIRVFLVSEATKSYSFRR  220 (342)
Q Consensus       197 ~s~dg~~irlwd~~~~~~~~~~~~  220 (342)
                      =..+|. |.+-+....+++.++..
T Consensus       234 yt~~G~-i~~vs~D~~~~lce~~~  256 (829)
T KOG2280|consen  234 YTETGK-IWVVSIDLSQILCEFNC  256 (829)
T ss_pred             EecCCc-EEEEecchhhhhhccCC
Confidence            888897 46778777777777753

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=89.87  E-value=13  Score=32.81  Aligned_cols=145  Identities=14%  Similarity=0.186  Sum_probs=68.2

Q ss_pred             ceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCC----CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc-CCc
Q 019349           96 SILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTV----PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM-ELH  170 (342)
Q Consensus        96 ~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~-~~~  170 (342)
                      ...+|.+..+...++.+.-+.+.....++.=..+...    ..+..+.++   +++...++..   .|.  ||... .++
T Consensus        63 ~l~~I~f~~~~g~ivG~~g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l---~~~~~~l~~~---~G~--iy~T~DgG~  134 (302)
T PF14870_consen   63 HLNSISFDGNEGWIVGEPGLLLHTTDGGKTWERVPLSSKLPGSPFGITAL---GDGSAELAGD---RGA--IYRTTDGGK  134 (302)
T ss_dssp             EEEEEEEETTEEEEEEETTEEEEESSTTSS-EE----TT-SS-EEEEEEE---ETTEEEEEET---T----EEEESSTTS
T ss_pred             eEEEEEecCCceEEEcCCceEEEecCCCCCcEEeecCCCCCCCeeEEEEc---CCCcEEEEcC---CCc--EEEeCCCCC
Confidence            3567777777766766555555555555433333221    112222222   2222333322   343  33332 232


Q ss_pred             eeE-EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC
Q 019349          171 SHC-EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG  249 (342)
Q Consensus       171 ~~~-~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg  249 (342)
                      .=. ....-...+..+..++||+++++++ .|.+++-||--... -....+. ....|.+|.|+|++.   +.+ ....|
T Consensus       135 tW~~~~~~~~gs~~~~~r~~dG~~vavs~-~G~~~~s~~~G~~~-w~~~~r~-~~~riq~~gf~~~~~---lw~-~~~Gg  207 (302)
T PF14870_consen  135 TWQAVVSETSGSINDITRSSDGRYVAVSS-RGNFYSSWDPGQTT-WQPHNRN-SSRRIQSMGFSPDGN---LWM-LARGG  207 (302)
T ss_dssp             SEEEEE-S----EEEEEE-TTS-EEEEET-TSSEEEEE-TT-SS--EEEE---SSS-EEEEEE-TTS----EEE-EETTT
T ss_pred             CeeEcccCCcceeEeEEECCCCcEEEEEC-cccEEEEecCCCcc-ceEEccC-ccceehhceecCCCC---EEE-EeCCc
Confidence            211 1233446788899999999888875 67776677753211 1112222 234699999999987   444 55888


Q ss_pred             cEEEEe
Q 019349          250 SLHVFS  255 (342)
Q Consensus       250 ~i~vwd  255 (342)
                      .|++=+
T Consensus       208 ~~~~s~  213 (302)
T PF14870_consen  208 QIQFSD  213 (302)
T ss_dssp             EEEEEE
T ss_pred             EEEEcc
Confidence            888877

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=89.68  E-value=23  Score=35.19  Aligned_cols=72  Identities=11%  Similarity=0.278  Sum_probs=48.7

Q ss_pred             CeeEEEECC--CCCEEEEEeCCCcEEEEEEcCCCe--------------------eEEEeccCcCceeEEEEEEe--cCC
Q 019349          181 PLAAIVLSS--NGMYIATASEQGTIIRVFLVSEAT--------------------KSYSFRRGTYPSTIFSLSFG--QSM  236 (342)
Q Consensus       181 ~v~~i~~s~--dg~~lat~s~dg~~irlwd~~~~~--------------------~~~~~~~~~~~~~v~~l~fs--~d~  236 (342)
                      .|+.|.+..  +...|+.|.+||.+ -+|.+++-.                    +...++   -+..+++++++  ...
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V-~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~---v~~SaWGLdIh~~~~~  177 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDV-LAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR---VGASAWGLDIHDYKKS  177 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeE-EEEEHHHHHHHHHhhccccccccccccCCCCeEee---cCCceeEEEEEecCcc
Confidence            477776654  44679999999986 499662110                    011111   12358999998  777


Q ss_pred             CcccEEEEEeCCCcEEEEecCCC
Q 019349          237 QFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       237 ~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      +   +||+++....|.||-....
T Consensus       178 r---lIAVSsNs~~VTVFaf~l~  197 (717)
T PF08728_consen  178 R---LIAVSSNSQEVTVFAFALV  197 (717)
T ss_pred             e---EEEEecCCceEEEEEEecc
Confidence            7   8999998888999987653

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=89.43  E-value=4.1  Score=37.74  Aligned_cols=80  Identities=16%  Similarity=0.189  Sum_probs=52.9

Q ss_pred             EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCC-eeEEEECCC-----------------CCE-EEEEe
Q 019349          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAP-LAAIVLSSN-----------------GMY-IATAS  198 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~-v~~i~~s~d-----------------g~~-lat~s  198 (342)
                      ...++.+|++.+.|+..  .-|.|.++|+.++..++.+++..+. +--+....+                 ..+ ++-+-
T Consensus       310 ~~~i~~sP~~~laA~tD--slGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyap  387 (415)
T PF14655_consen  310 GESICLSPSGRLAAVTD--SLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAP  387 (415)
T ss_pred             EEEEEECCCCCEEEEEc--CCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEec
Confidence            45677788888888775  5799999999999888877765432 111111111                 122 33445


Q ss_pred             CCCcEEEEEEcCCCeeEEEecc
Q 019349          199 EQGTIIRVFLVSEATKSYSFRR  220 (342)
Q Consensus       199 ~dg~~irlwd~~~~~~~~~~~~  220 (342)
                      ..| ++.||++++|.++..+.-
T Consensus       388 rRg-~lEvW~~~~g~Rv~a~~v  408 (415)
T PF14655_consen  388 RRG-ILEVWSMRQGPRVAAFNV  408 (415)
T ss_pred             cCC-eEEEEecCCCCEEEEEEe
Confidence            566 578999999988887753

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=89.13  E-value=2.4  Score=24.56  Aligned_cols=40  Identities=15%  Similarity=0.060  Sum_probs=26.1

Q ss_pred             CccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEE
Q 019349          146 NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVL  187 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~  187 (342)
                      ++..|.++.. .+++|.++|..+++.+..+..-.. -..++|
T Consensus         2 d~~~lyv~~~-~~~~v~~id~~~~~~~~~i~vg~~-P~~i~~   41 (42)
T TIGR02276         2 DGTKLYVTNS-GSNTVSVIDTATNKVIATIPVGGY-PFGVAV   41 (42)
T ss_pred             CCCEEEEEeC-CCCEEEEEECCCCeEEEEEECCCC-CceEEe
Confidence            4455555554 578999999999888877765322 234444

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=88.81  E-value=4.9  Score=37.22  Aligned_cols=42  Identities=17%  Similarity=0.245  Sum_probs=33.3

Q ss_pred             cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349          177 AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       177 ~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~  219 (342)
                      .....+.+|+.+|++++.|+...=|+++ |+|+.++..+.-++
T Consensus       305 D~~R~~~~i~~sP~~~laA~tDslGRV~-LiD~~~~~vvrmWK  346 (415)
T PF14655_consen  305 DSKREGESICLSPSGRLAAVTDSLGRVL-LIDVARGIVVRMWK  346 (415)
T ss_pred             cCCceEEEEEECCCCCEEEEEcCCCcEE-EEECCCChhhhhhc
Confidence            3345688999999999888877778865 99999988766553

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.77  E-value=8.9  Score=29.25  Aligned_cols=97  Identities=12%  Similarity=0.070  Sum_probs=52.4

Q ss_pred             CCeEEEEECC--------CCcEEEEEecCCceEEEEE-------cCCeEEEEECCeEEEEECCCCceeeEEeCCCCCceE
Q 019349           74 PRRLCLFNTT--------TGTALRELNFLTSILAVRL-------NKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGL  138 (342)
Q Consensus        74 d~~i~iwd~~--------~~~~~~~~~~~~~v~~i~~-------~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~  138 (342)
                      -++|.|.+..        ....+..+.+...|++++-       .++-+++.+...+..||+....-+...+.+.....+
T Consensus        19 ~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d~Fyke~~DGvn~i   98 (136)
T PF14781_consen   19 GGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSDLFYKEVPDGVNAI   98 (136)
T ss_pred             CCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCchhhhhhCccceeEE
Confidence            3566666654        3345666777778887754       246677788999999999765443322222222122


Q ss_pred             EEEeeCCCccEEEEeCCCCccEEEEEEccCCcee
Q 019349          139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH  172 (342)
Q Consensus       139 ~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~  172 (342)
                      +.=.......-++..|  .+-.|+-||..-.+..
T Consensus        99 ~~g~~~~~~~~l~ivG--Gncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   99 VIGKLGDIPSPLVIVG--GNCSIQGFDYEGNEIF  130 (136)
T ss_pred             EEEecCCCCCcEEEEC--ceEEEEEeCCCCcEEE
Confidence            2111222122334444  2466777775544433

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.72  E-value=9.3  Score=39.95  Aligned_cols=132  Identities=17%  Similarity=0.214  Sum_probs=82.5

Q ss_pred             CCeEEEEECCCCcEEEEEec-CCceEEEEEc---C--------CeEEEEECCeEEEEECCCCc-------eeeEEeCCCC
Q 019349           74 PRRLCLFNTTTGTALRELNF-LTSILAVRLN---K--------KRLVIVLREKTYIYDANTLA-------ILDTIDTVPN  134 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~---~--------~~~~~~~d~~i~i~d~~~~~-------~~~~~~~~~~  134 (342)
                      |+.+.+|+..++.....+.. .+.|..+.+-   |        ..+++++--.|.++-+.-.+       ....+.....
T Consensus        98 Dn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~d  177 (1311)
T KOG1900|consen   98 DNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVD  177 (1311)
T ss_pred             CCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecC
Confidence            79999999998766666543 4466666542   2        24556666777777553211       1112233344


Q ss_pred             CceEEEEeeCCCccEEEEeCCCCccEEEEEEcc----CC-------c-------------eeEEEe-cccCCeeEEEECC
Q 019349          135 LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM----EL-------H-------------SHCEID-AHQAPLAAIVLSS  189 (342)
Q Consensus       135 ~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~----~~-------~-------------~~~~~~-~h~~~v~~i~~s~  189 (342)
                      +..+.++....+|+. +.+|  .||  .+|.+.    .+       +             .+..+. .+..+|..|++..
T Consensus       178 g~~V~~I~~t~nGRI-F~~G--~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~  252 (1311)
T KOG1900|consen  178 GVSVNCITYTENGRI-FFAG--RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN  252 (1311)
T ss_pred             CceEEEEEeccCCcE-EEee--cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc
Confidence            556667775556654 4556  356  555541    11       0             011233 5788999999998


Q ss_pred             CCCEEEEEeCCCcEEEEEEcCC
Q 019349          190 NGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       190 dg~~lat~s~dg~~irlwd~~~  211 (342)
                      .-+.|.+=++.|+ |++||+..
T Consensus       253 SR~IlY~lsek~~-v~~Y~i~~  273 (1311)
T KOG1900|consen  253 SRNILYVLSEKGT-VSAYDIGG  273 (1311)
T ss_pred             ccceeeeeccCce-EEEEEccC
Confidence            8889999999987 69999975

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.67  E-value=3.6  Score=34.58  Aligned_cols=67  Identities=21%  Similarity=0.294  Sum_probs=46.2

Q ss_pred             ECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe------ccC------cCceeEEEEEEecCCCcccEEEEEeCCCcEEEE
Q 019349          187 LSSNGMYIATASEQGTIIRVFLVSEATKSYSF------RRG------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVF  254 (342)
Q Consensus       187 ~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~------~~~------~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vw  254 (342)
                      +..++++|+.-..+|.+ ++||+.+++.+..-      -..      .....|..+.++.+|.   -|++ -.+|..+.|
T Consensus        18 l~~~~~~Ll~iT~~G~l-~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~---PiV~-lsng~~y~y   92 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLL-YVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV---PIVT-LSNGDSYSY   92 (219)
T ss_pred             EEeCCCEEEEEeCCCeE-EEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC---EEEE-EeCCCEEEe
Confidence            44568889999999975 79999998764322      010      1234588899998886   4444 445788999


Q ss_pred             ecCC
Q 019349          255 SPGF  258 (342)
Q Consensus       255 d~~~  258 (342)
                      +.+-
T Consensus        93 ~~~L   96 (219)
T PF07569_consen   93 SPDL   96 (219)
T ss_pred             cccc
Confidence            8653

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=88.44  E-value=9.4  Score=29.12  Aligned_cols=120  Identities=15%  Similarity=0.149  Sum_probs=66.6

Q ss_pred             EEECCCCCEEEEEeCCCcEEEEEEcCCCe--------eEEEeccCcCceeEEEEE---EecCCCcccEEEEEeCCCcEEE
Q 019349          185 IVLSSNGMYIATASEQGTIIRVFLVSEAT--------KSYSFRRGTYPSTIFSLS---FGQSMQFQDILVATSSSGSLHV  253 (342)
Q Consensus       185 i~~s~dg~~lat~s~dg~~irlwd~~~~~--------~~~~~~~~~~~~~v~~l~---fs~d~~~~~~l~~~s~dg~i~v  253 (342)
                      -.|......|+.++.-|+++ |++.....        .+..+.-   ...|++|+   |.|+.. .+.|+.|+. .++-.
T Consensus         4 GkfDG~~pcL~~aT~~gKV~-IH~ph~~~~~~~~~~~~i~~LNi---n~~italaaG~l~~~~~-~D~LliGt~-t~lla   77 (136)
T PF14781_consen    4 GKFDGVHPCLACATTGGKVF-IHNPHERGQRTGRQDSDISFLNI---NQEITALAAGRLKPDDG-RDCLLIGTQ-TSLLA   77 (136)
T ss_pred             EEeCCCceeEEEEecCCEEE-EECCCccccccccccCceeEEEC---CCceEEEEEEecCCCCC-cCEEEEecc-ceEEE
Confidence            35666666788888778764 88765332        2233322   12366664   443322 247777765 48999


Q ss_pred             EecCCCCCCCCCCCcccccccccccccccc-ccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCCeeeeEEE
Q 019349          254 FSPGFAINQRRGGRTSSILGSILPESVNEV-LDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLD  332 (342)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~  332 (342)
                      ||+..+...-..+         .++.+.++ +.           .++.....|+.++++-.|+-|+   .++.|..|.++
T Consensus        78 YDV~~N~d~Fyke---------~~DGvn~i~~g-----------~~~~~~~~l~ivGGncsi~Gfd---~~G~e~fWtVt  134 (136)
T PF14781_consen   78 YDVENNSDLFYKE---------VPDGVNAIVIG-----------KLGDIPSPLVIVGGNCSIQGFD---YEGNEIFWTVT  134 (136)
T ss_pred             EEcccCchhhhhh---------CccceeEEEEE-----------ecCCCCCcEEEECceEEEEEeC---CCCcEEEEEec
Confidence            9998876532111         12211111 10           0112225677888888887774   56778888776


Q ss_pred             e
Q 019349          333 R  333 (342)
Q Consensus       333 ~  333 (342)
                      +
T Consensus       135 g  135 (136)
T PF14781_consen  135 G  135 (136)
T ss_pred             c
Confidence            4

>PHA03098 kelch-like protein; Provisional

Probab=88.36  E-value=25  Score=33.90  Aligned_cols=150  Identities=11%  Similarity=0.045  Sum_probs=67.5

Q ss_pred             CeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEEC--------CeEEEEECCCCceeeE
Q 019349           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVLR--------EKTYIYDANTLAILDT  128 (342)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~d--------~~i~i~d~~~~~~~~~  128 (342)
                      +.+.++||.... ..-+.+..||..+++....-..+.  .-.++....+.+++.+.        +.+..||..+.+=...
T Consensus       343 ~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        343 NRIYVIGGIYNS-ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CEEEEEeCCCCC-EecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            445555553211 123568889988776543222221  11223334555655541        3578888876421111


Q ss_pred             EeCCCCCceEEEEeeCCCccEEEEeCCCCc------cEEEEEEccCCc--eeEEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349          129 IDTVPNLKGLCAFSPSLNACFLAVPASTTK------GSVLVYNVMELH--SHCEIDAHQAPLAAIVLSSNGMYIATASEQ  200 (342)
Q Consensus       129 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~dg~~lat~s~d  200 (342)
                      -..+....+..+...  ++...+.+|....      ..+.+||..+.+  .+..+.........+.+  +++.++.|+.+
T Consensus       422 ~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~  497 (534)
T PHA03098        422 SPLPISHYGGCAIYH--DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDK  497 (534)
T ss_pred             CCCCccccCceEEEE--CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCc
Confidence            011111112222222  2345555553211      238888987654  12111111111122223  66777777654


Q ss_pred             C----cEEEEEEcCCCe
Q 019349          201 G----TIIRVFLVSEAT  213 (342)
Q Consensus       201 g----~~irlwd~~~~~  213 (342)
                      +    ..+.++|..+.+
T Consensus       498 ~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        498 YEYYINEIEVYDDKTNT  514 (534)
T ss_pred             CCcccceeEEEeCCCCE
Confidence            2    124567766543

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=88.32  E-value=33  Score=35.31  Aligned_cols=137  Identities=17%  Similarity=0.178  Sum_probs=75.8

Q ss_pred             eEEEEECCCCceeeEEeCCCCC--ceEE--EEeeCCCccEEEEeCCC---------CccEEEEEEc-cCCceeEEEec--
Q 019349          114 KTYIYDANTLAILDTIDTVPNL--KGLC--AFSPSLNACFLAVPAST---------TKGSVLVYNV-MELHSHCEIDA--  177 (342)
Q Consensus       114 ~i~i~d~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~l~~~~~~---------~~g~i~iwd~-~~~~~~~~~~~--  177 (342)
                      .|+++|..+++.+..+....+.  ..++  .++.++...+++++...         .+|.++.|++ +.++.+.-+..  
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            3778887777766666544441  2223  33334444344443210         2456777775 34443322211  


Q ss_pred             ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          178 HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       178 h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      -..+|.  ++.|-..++.+|-  |..+|++|+-..+++.......-+..|.++.+.  +.   .+++|...-.|+++..+
T Consensus       934 ~~~~v~--Ai~~f~~~~Lagv--G~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~---RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen  934 IPGPVG--AICPFQGRVLAGV--GRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GA---RIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred             CCccce--EEeccCCEEEEec--ccEEEEeeCChHHHHhhhhhccCceEEEEEeec--ce---EEEEeeccceEEEEEEe
Confidence            123343  4456555666654  345799999877766554433335557777765  34   68888877788777655


Q ss_pred             CC
Q 019349          258 FA  259 (342)
Q Consensus       258 ~~  259 (342)
                      ..
T Consensus      1005 ~~ 1006 (1205)
T KOG1898|consen 1005 RE 1006 (1205)
T ss_pred             cC
Confidence            43

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=87.96  E-value=35  Score=35.16  Aligned_cols=172  Identities=14%  Similarity=0.125  Sum_probs=101.8

Q ss_pred             eEEEEECCCCcEEEEEecCC-----ceEEEEEcC--Ce-EEEE-------------ECCeEEEEECC-CCceeeEEeCCC
Q 019349           76 RLCLFNTTTGTALRELNFLT-----SILAVRLNK--KR-LVIV-------------LREKTYIYDAN-TLAILDTIDTVP  133 (342)
Q Consensus        76 ~i~iwd~~~~~~~~~~~~~~-----~v~~i~~~~--~~-~~~~-------------~d~~i~i~d~~-~~~~~~~~~~~~  133 (342)
                      .|++.|..+++.+..+.+..     .+..+.|+.  +. +..+             +++.++.|++- +++.+.-+....
T Consensus       854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~  933 (1205)
T KOG1898|consen  854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE  933 (1205)
T ss_pred             eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence            58999999888887776543     345555532  22 1111             13457788773 344333222222


Q ss_pred             CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE--ecccCCeeEEEECCCCCEEEEEeCCCcEE-EEEEcC
Q 019349          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI--DAHQAPLAAIVLSSNGMYIATASEQGTII-RVFLVS  210 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~--~~h~~~v~~i~~s~dg~~lat~s~dg~~i-rlwd~~  210 (342)
                      -+..+.++++..+ ..|+..|    ..+++||+...++++..  +.-...|+.+.+.  +..++.|.....+. -.|+-.
T Consensus       934 ~~~~v~Ai~~f~~-~~LagvG----~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~--~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen  934 IPGPVGAICPFQG-RVLAGVG----RFLRLYDLGKKKLLRKCELKFIPNRISSIQTY--GARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred             CCccceEEeccCC-EEEEecc----cEEEEeeCChHHHHhhhhhccCceEEEEEeec--ceEEEEeeccceEEEEEEecC
Confidence            2344667777654 5555544    57999999877765433  2234567777764  56777775444432 234433


Q ss_pred             CCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          211 EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                       ++.+..+.....+..|+++.+-..+.    +|.+..-|.+.+-.+...
T Consensus      1007 -~n~l~~fadD~~pR~Vt~~~~lD~~t----vagaDrfGNi~~vR~P~d 1050 (1205)
T KOG1898|consen 1007 -DNQLIVFADDPVPRHVTALELLDYDT----VAGADRFGNIAVVRIPPD 1050 (1205)
T ss_pred             -CCeEEEEeCCCccceeeEEEEecCCc----eeeccccCcEEEEECCCc
Confidence             44555564443445588877766664    888888889888877544

>KOG2109 consensus WD40 repeat protein [General function prediction only]

Probab=87.87  E-value=0.44  Score=45.52  Aligned_cols=85  Identities=21%  Similarity=0.349  Sum_probs=59.7

Q ss_pred             EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc----------CcCceeEEEE
Q 019349          161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR----------GTYPSTIFSL  230 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~----------~~~~~~v~~l  230 (342)
                      +.+=|..+...+..+++|+.++..++|.+.|..|++++-.|.-|.++.+  ...+.+...          +....-+..+
T Consensus       297 vivkdf~S~a~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRi--met~~t~~~~~qs~~~s~ra~t~aviqdi  374 (788)
T KOG2109|consen  297 VIVKDFDSFADIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRI--METVCTVNVSDQSLVVSPRANTAAVIQDI  374 (788)
T ss_pred             EEeecccchhhhhheeeecCcccccccccCceEEEEEeeccceeeeEEe--ccccccccccccccccchhcchHHHHHHH
Confidence            5555667777778899999999999999999999999999975544443  332222211          1111225567


Q ss_pred             EEecCCCcccEEEEEeCCCc
Q 019349          231 SFGQSMQFQDILVATSSSGS  250 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s~dg~  250 (342)
                      +|+....   +++.+|-+|+
T Consensus       375 cfs~~s~---~r~~gsc~Ge  391 (788)
T KOG2109|consen  375 CFSEVST---IRTAGSCEGE  391 (788)
T ss_pred             hhhhhcc---eEeecccCCC
Confidence            8888888   8888887764

>PRK13684 Ycf48-like protein; Provisional

Probab=87.64  E-value=21  Score=32.17  Aligned_cols=148  Identities=11%  Similarity=0.084  Sum_probs=77.7

Q ss_pred             ceEEEEEcCCeEEEEE--CCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCcee
Q 019349           96 SILAVRLNKKRLVIVL--REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH  172 (342)
Q Consensus        96 ~v~~i~~~~~~~~~~~--d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~  172 (342)
                      .+.++.+.++..+++.  .+.++. ...++ +.-..+.. .....+.++...+++..++++.   .|.+.+=....+..-
T Consensus       174 ~~~~i~~~~~g~~v~~g~~G~i~~-s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~---~G~~~~~s~d~G~sW  248 (334)
T PRK13684        174 VVRNLRRSPDGKYVAVSSRGNFYS-TWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLAR---GGQIRFNDPDDLESW  248 (334)
T ss_pred             eEEEEEECCCCeEEEEeCCceEEE-EcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEec---CCEEEEccCCCCCcc
Confidence            5677777777655544  343332 22222 22222222 2223455666666666665543   465543223333322


Q ss_pred             EEEec----ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc-CcCceeEEEEEEecCCCcccEEEEEeC
Q 019349          173 CEIDA----HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-GTYPSTIFSLSFGQSMQFQDILVATSS  247 (342)
Q Consensus       173 ~~~~~----h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~-~~~~~~v~~l~fs~d~~~~~~l~~~s~  247 (342)
                      .....    -...+..+.+.+++..++ ++.+|.+  +.....|+.-...+. ...+...+.+.|..+++    ....+.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v--~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~----~~~~G~  321 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTL--LVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK----GFVLGQ  321 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeE--EEeCCCCCCCeECCcCCCCCcceEEEEEeCCCc----eEEECC
Confidence            21111    123578899999887555 4567753  455555554333321 11234578888887776    455677


Q ss_pred             CCcEEEEe
Q 019349          248 SGSLHVFS  255 (342)
Q Consensus       248 dg~i~vwd  255 (342)
                      .|.|--|+
T Consensus       322 ~G~il~~~  329 (334)
T PRK13684        322 RGVLLRYV  329 (334)
T ss_pred             CceEEEec
Confidence            88887775

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=86.96  E-value=24  Score=32.19  Aligned_cols=61  Identities=8%  Similarity=0.140  Sum_probs=36.0

Q ss_pred             cCCeeEEEECCCCCEEEEEeCC-------------------CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcc
Q 019349          179 QAPLAAIVLSSNGMYIATASEQ-------------------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ  239 (342)
Q Consensus       179 ~~~v~~i~~s~dg~~lat~s~d-------------------g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~  239 (342)
                      ....+.++|.|||.+.++-+..                   |.++ -+|...++ +..+..+  ......++|+|++.  
T Consensus       123 ~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~-r~~pdg~~-~e~~a~G--~rnp~Gl~~d~~G~--  196 (367)
T TIGR02604       123 HHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLF-RYNPDGGK-LRVVAHG--FQNPYGHSVDSWGD--  196 (367)
T ss_pred             cccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEE-EEecCCCe-EEEEecC--cCCCccceECCCCC--
Confidence            3457889999999876655521                   3332 34444333 2333222  22357899999998  


Q ss_pred             cEEEEEe
Q 019349          240 DILVATS  246 (342)
Q Consensus       240 ~~l~~~s  246 (342)
                       ++++-.
T Consensus       197 -l~~tdn  202 (367)
T TIGR02604       197 -VFFCDN  202 (367)
T ss_pred             -EEEEcc
Confidence             665544

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=86.95  E-value=18  Score=30.62  Aligned_cols=44  Identities=9%  Similarity=0.064  Sum_probs=35.0

Q ss_pred             CCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECC
Q 019349          144 SLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS  189 (342)
Q Consensus       144 ~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~  189 (342)
                      +.++.+.+++-  ..|+|...|..+++.+..++-....|+|++|--
T Consensus       220 D~eG~L~Va~~--ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  220 DTEGNLYVATF--NGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             ccCCcEEEEEe--cCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            44555554443  468999999999999999998899999999964

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=86.81  E-value=39  Score=34.39  Aligned_cols=109  Identities=18%  Similarity=0.268  Sum_probs=71.1

Q ss_pred             CCCCeEEEEEcCCC-CEEEEEcCCcE-EEEeCCCC------cEEEEEe-eC----------CEEEEEEcCCCCeEEEEcC
Q 019349            6 SSYPVFFVSFNQDN-SGFALSTKDGF-KIFDSSTG------RLCYERA-VG----------AFSIVEMLYSSSLLAIVGA   66 (342)
Q Consensus         6 ~~~~V~~l~fs~d~-~~la~g~~~g~-~v~d~~~~------~~~~~~~-~~----------~~~~~~~~~~~~~~~~~~~   66 (342)
                      ...+...++|+|.. ..||+-..+|. .||++...      .+..... .+          ...-+.|..+.+.++++. 
T Consensus       144 gg~~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~-  222 (765)
T PF10214_consen  144 GGFPHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCN-  222 (765)
T ss_pred             CCCccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEc-
Confidence            34577899999844 57998888885 99999221      1111110 11          122345555556666664 


Q ss_pred             CCCCCCCCCeEEEEECCCCcEEE---EEecCCceEEEEEcCC---eEEEEECCeEEEEECCC
Q 019349           67 GEQPSLSPRRLCLFNTTTGTALR---ELNFLTSILAVRLNKK---RLVIVLREKTYIYDANT  122 (342)
Q Consensus        67 g~~~~~~d~~i~iwd~~~~~~~~---~~~~~~~v~~i~~~~~---~~~~~~d~~i~i~d~~~  122 (342)
                             ...+.++|++++....   .......|.++.-.+.   +.++.+...|...++..
T Consensus       223 -------r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  223 -------RSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             -------CCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence                   4688899988776532   2223457888888766   77788888999999876

These proteins are found in fungi.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=86.23  E-value=4.1  Score=39.42  Aligned_cols=32  Identities=19%  Similarity=0.152  Sum_probs=24.7

Q ss_pred             EEEEEEec----CCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          227 IFSLSFGQ----SMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       227 v~~l~fs~----d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      ..++++++    +..   +|++-+.|+++|+||+++...
T Consensus       217 ~~~~~~~~~~~~~~~---~l~tl~~D~~LRiW~l~t~~~  252 (547)
T PF11715_consen  217 AASLAVSSSEINDDT---FLFTLSRDHTLRIWSLETGQC  252 (547)
T ss_dssp             EEEEEE-----ETTT---EEEEEETTSEEEEEETTTTCE
T ss_pred             cceEEEecceeCCCC---EEEEEeCCCeEEEEECCCCeE
Confidence            45556665    555   999999999999999998876

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.15  E-value=28  Score=32.19  Aligned_cols=197  Identities=12%  Similarity=0.073  Sum_probs=100.5

Q ss_pred             EEEcCCCCeEEEEc--CCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC--eEEEEE-C----------C-eE
Q 019349           52 VEMLYSSSLLAIVG--AGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK--RLVIVL-R----------E-KT  115 (342)
Q Consensus        52 ~~~~~~~~~~~~~~--~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~~~~-d----------~-~i  115 (342)
                      ..+.++++++++.-  +|    ....+|++.|+.+|+.+...-.......+.|.++  .++... +          . .|
T Consensus       129 ~~~Spdg~~la~~~s~~G----~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  129 FSVSPDGKRLAYSLSDGG----SEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEETTTSSEEEEEEEETT----SSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeECCCCCEEEEEecCCC----CceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            45667788877542  22    2346799999999977653211112233888777  343333 2          1 48


Q ss_pred             EEEECCCCcee--eEEeCCCCCceEEEEeeCCCccEEEE-eCCCCc-cEEEEEEccCC----ceeEEEecccCCeeEEEE
Q 019349          116 YIYDANTLAIL--DTIDTVPNLKGLCAFSPSLNACFLAV-PASTTK-GSVLVYNVMEL----HSHCEIDAHQAPLAAIVL  187 (342)
Q Consensus       116 ~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-g~i~iwd~~~~----~~~~~~~~h~~~v~~i~~  187 (342)
                      +.|.+.+...-  -.++...+....+.+..++++.+++. ..+..+ ..+.+.|+..+    .....+..+...+....-
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            89999876432  22333333322556666777777664 222234 67899998874    233333333333433322


Q ss_pred             CCCCCEEEEEe---CCCcEEEEEEcCCCee---EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC--cEEEEecC
Q 019349          188 SSNGMYIATAS---EQGTIIRVFLVSEATK---SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG--SLHVFSPG  257 (342)
Q Consensus       188 s~dg~~lat~s---~dg~~irlwd~~~~~~---~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg--~i~vwd~~  257 (342)
                      ...+.+++...   ..+.++ -.++.+...   ...+..+.....+..+....+.    +++....++  .|+++++.
T Consensus       285 ~~~~~~yi~Tn~~a~~~~l~-~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~----Lvl~~~~~~~~~l~v~~~~  357 (414)
T PF02897_consen  285 HHGDRLYILTNDDAPNGRLV-AVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDY----LVLSYRENGSSRLRVYDLD  357 (414)
T ss_dssp             EETTEEEEEE-TT-TT-EEE-EEETTSTSGGGEEEEEE--SSSEEEEEEEEETTE----EEEEEEETTEEEEEEEETT
T ss_pred             ccCCEEEEeeCCCCCCcEEE-EecccccccccceeEEcCCCCceeEEEEEEECCE----EEEEEEECCccEEEEEECC
Confidence            23444444332   235554 456666542   1133222222346666554332    455555555  48889988

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.47  E-value=17  Score=37.62  Aligned_cols=84  Identities=13%  Similarity=0.135  Sum_probs=53.7

Q ss_pred             CccEEEEEEccCCce-eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc--CceeEEEEEEe
Q 019349          157 TKGSVLVYNVMELHS-HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT--YPSTIFSLSFG  233 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~-~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~--~~~~v~~l~fs  233 (342)
                      .|+.|++.-+..... +..++ -....+|++|+|.|+.++.|-..|+++ -|- .+++...++.+..  ....|.+|+|-
T Consensus       176 ~dlsl~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~v-Qy~-P~leik~~ip~Pp~~e~yrvl~v~Wl  252 (1405)
T KOG3630|consen  176 SDLSLRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEV-QYE-PSLEIKSEIPEPPVEENYRVLSVTWL  252 (1405)
T ss_pred             cccchhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEE-Eee-cccceeecccCCCcCCCcceeEEEEe
Confidence            477788876643322 22222 345689999999999999999999864 333 3444434433211  13459999998


Q ss_pred             cCCCcccEEEEEe
Q 019349          234 QSMQFQDILVATS  246 (342)
Q Consensus       234 ~d~~~~~~l~~~s  246 (342)
                      ....   +|++-+
T Consensus       253 ~t~e---flvvy~  262 (1405)
T KOG3630|consen  253 STQE---FLVVYG  262 (1405)
T ss_pred             ccee---EEEEec
Confidence            7766   666544

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=85.40  E-value=25  Score=30.90  Aligned_cols=159  Identities=13%  Similarity=0.130  Sum_probs=83.0

Q ss_pred             CCeEEEEECCCCcEEEEEecCC-------ceEEEEEcC--C----eEEEEE---CCeEEEEECCCCceeeEEeCCCCC--
Q 019349           74 PRRLCLFNTTTGTALRELNFLT-------SILAVRLNK--K----RLVIVL---REKTYIYDANTLAILDTIDTVPNL--  135 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~-------~v~~i~~~~--~----~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~--  135 (342)
                      .-+|.+||+++++.+..+.++.       ...++.+..  .    ..+..+   ...+.+||+.+++.-+.......+  
T Consensus        33 ~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p  112 (287)
T PF03022_consen   33 PPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP  112 (287)
T ss_dssp             --EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-
T ss_pred             CcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec
Confidence            4589999999999999988754       346666654  1    344444   358999999998765555322211  


Q ss_pred             ---------------ceEEEEeeC---CCccEEEEeCCCCccEEEEEEcc-----CCc---------eeEEEeccc-CCe
Q 019349          136 ---------------KGLCAFSPS---LNACFLAVPASTTKGSVLVYNVM-----ELH---------SHCEIDAHQ-APL  182 (342)
Q Consensus       136 ---------------~~~~~~~~~---~~~~~l~~~~~~~~g~i~iwd~~-----~~~---------~~~~~~~h~-~~v  182 (342)
                                     .++..++..   +++..|.+..- ..  -++|-+.     +..         .+..+ +.+ ...
T Consensus       113 ~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~l-ss--~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~~~s  188 (287)
T PF03022_consen  113 DAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPL-SS--RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKGSQS  188 (287)
T ss_dssp             SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEET-T---SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE---SE
T ss_pred             cccceeccCceEecCCCccccccCCCCCCccEEEEEeC-CC--CcEEEEEHHHhhCccccccccccccceec-cccCCCC
Confidence                           112223322   24444444321 11  2223221     111         11122 222 356


Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEEEcCCCe---eEEEeccCcC-ceeEEEEEEec--CCC
Q 019349          183 AAIVLSSNGMYIATASEQGTIIRVFLVSEAT---KSYSFRRGTY-PSTIFSLSFGQ--SMQ  237 (342)
Q Consensus       183 ~~i~~s~dg~~lat~s~dg~~irlwd~~~~~---~~~~~~~~~~-~~~v~~l~fs~--d~~  237 (342)
                      ..++++++|.+..+--+.+.+ ..|+..+.-   .+..+..... -.-+.++.+.+  ++.
T Consensus       189 ~g~~~D~~G~ly~~~~~~~aI-~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~  248 (287)
T PF03022_consen  189 DGMAIDPNGNLYFTDVEQNAI-GCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY  248 (287)
T ss_dssp             CEEEEETTTEEEEEECCCTEE-EEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-
T ss_pred             ceEEECCCCcEEEecCCCCeE-EEEeCCCCcCccchheeEEcCceeeccceeeeccccCce
Confidence            778999999988888888774 699987521   1122211111 12367788888  665

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=85.24  E-value=55  Score=34.68  Aligned_cols=146  Identities=16%  Similarity=0.251  Sum_probs=82.6

Q ss_pred             eEEEEECCeEEEEECCCCceeeEEeCCCCCceEE-EEeeCCC------ccEEEEeCCCCccEEEEEEcc----CCce---
Q 019349          106 RLVIVLREKTYIYDANTLAILDTIDTVPNLKGLC-AFSPSLN------ACFLAVPASTTKGSVLVYNVM----ELHS---  171 (342)
Q Consensus       106 ~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~------~~~l~~~~~~~~g~i~iwd~~----~~~~---  171 (342)
                      +..+..|+.+.+|+++++.....++.-.+...-+ -+-|.|+      ...|+.+.   --.|.++-+.    ++..   
T Consensus        92 RaWiTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT---~~ei~ilgV~~~~~~~~~~~f  168 (1311)
T KOG1900|consen   92 RAWITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT---PVEIVILGVSFDEFTGELSIF  168 (1311)
T ss_pred             ceEEEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc---cceEEEEEEEeccccCccccc
Confidence            4455569999999999876666665544432222 2233332      11233222   2346665432    2211   


Q ss_pred             --eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE-EEcCCC---e---e--------------EEEeccCcCceeEE
Q 019349          172 --HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV-FLVSEA---T---K--------------SYSFRRGTYPSTIF  228 (342)
Q Consensus       172 --~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl-wd~~~~---~---~--------------~~~~~~~~~~~~v~  228 (342)
                        ..++......|+||....+|+.+.+|- ||.+..+ |...+|   +   +              +..+. +.+..+|.
T Consensus       169 ~~~~~i~~dg~~V~~I~~t~nGRIF~~G~-dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~-~~~~dpI~  246 (1311)
T KOG1900|consen  169 NTSFKISVDGVSVNCITYTENGRIFFAGR-DGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVP-GSSKDPIR  246 (1311)
T ss_pred             ccceeeecCCceEEEEEeccCCcEEEeec-CCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCC-CCCCCcce
Confidence              122333456789999888998777654 5543222 222221   1   1              00111 22344688


Q ss_pred             EEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          229 SLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      .|+......   .|.+=++.|+|.+|++...
T Consensus       247 qi~ID~SR~---IlY~lsek~~v~~Y~i~~~  274 (1311)
T KOG1900|consen  247 QITIDNSRN---ILYVLSEKGTVSAYDIGGN  274 (1311)
T ss_pred             eeEeccccc---eeeeeccCceEEEEEccCC
Confidence            888876666   8999999999999999874

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=84.41  E-value=20  Score=32.75  Aligned_cols=134  Identities=16%  Similarity=0.172  Sum_probs=63.2

Q ss_pred             CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCcee---EEEEEEecCCCcccEEEEEeCC----CcEEEEecCCCCC
Q 019349          189 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPST---IFSLSFGQSMQFQDILVATSSS----GSLHVFSPGFAIN  261 (342)
Q Consensus       189 ~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~---v~~l~fs~d~~~~~~l~~~s~d----g~i~vwd~~~~~~  261 (342)
                      |.-.+++....++-+ .+||+. |+.+..+..+ ....   ...+.+  .++-- -||+++..    ++|++|.+.....
T Consensus        66 p~kSlIigTdK~~GL-~VYdL~-Gk~lq~~~~G-r~NNVDvrygf~l--~g~~v-Dlavas~R~~g~n~l~~f~id~~~g  139 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGL-YVYDLD-GKELQSLPVG-RPNNVDVRYGFPL--NGKTV-DLAVASDRSDGRNSLRLFRIDPDTG  139 (381)
T ss_dssp             GGG-EEEEEETTTEE-EEEETT-S-EEEEE-SS--EEEEEEEEEEEE--TTEEE-EEEEEEE-CCCT-EEEEEEEETTTT
T ss_pred             cccceEEEEeCCCCE-EEEcCC-CcEEEeecCC-Ccceeeeecceec--CCceE-EEEEEecCcCCCCeEEEEEecCCCC
Confidence            445667777777765 699994 7777777533 1222   222333  33300 15555532    5799999864221


Q ss_pred             -CCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCCCCeeeeEEEeeeecc
Q 019349          262 -QRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINNCCESTWTLDREFNLL  338 (342)
Q Consensus       262 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                       ..........+    +.....   +-+  ++.+.-+.. ..-++++...+|.+..|.+.....+...-.+.|.|.|-
T Consensus       140 ~L~~v~~~~~p~----~~~~~e---~yG--lcly~~~~~-g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~  207 (381)
T PF02333_consen  140 ELTDVTDPAAPI----ATDLSE---PYG--LCLYRSPST-GALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG  207 (381)
T ss_dssp             EEEE-CBTTC-E----E-SSSS---EEE--EEEEE-TTT---EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S
T ss_pred             cceEcCCCCccc----cccccc---cee--eEEeecCCC-CcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC
Confidence             00000000000    000000   000  011110001 12478888899999999998766555566888888873

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=84.03  E-value=36  Score=31.72  Aligned_cols=29  Identities=28%  Similarity=0.452  Sum_probs=24.6

Q ss_pred             EEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      |.+|+..+..+   .|.+.+.+|.|++|++..
T Consensus       192 I~~v~~d~~r~---~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  192 IVQVAVDPSRR---LLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             EEEEEEETTTT---EEEEEESSE-EEEEEE-S
T ss_pred             eeeEEecCCcC---EEEEEeCCCcEEEEEEeC
Confidence            88898888877   999999999999999975

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>KOG3611 consensus Semaphorins [Signal transduction mechanisms]

Probab=83.99  E-value=13  Score=37.11  Aligned_cols=72  Identities=21%  Similarity=0.271  Sum_probs=51.0

Q ss_pred             cCCeeEEEEC----CCCCE--EEEEeCCCcEEEEEEcCCCe-----eEEEeccCcCceeEEEEEEecCCCcccEEEEEeC
Q 019349          179 QAPLAAIVLS----SNGMY--IATASEQGTIIRVFLVSEAT-----KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS  247 (342)
Q Consensus       179 ~~~v~~i~~s----~dg~~--lat~s~dg~~irlwd~~~~~-----~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~  247 (342)
                      ....+.|+..    .|+++  |..|.++|+++|+-......     .+.+++--....+|..|.+++...   .|.+|+.
T Consensus       407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~---~LyVgs~  483 (737)
T KOG3611|consen  407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRG---SLYVGSR  483 (737)
T ss_pred             cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCC---eEEEEcc
Confidence            4556677776    55654  77899999988877665521     355554333446799999999887   8999999


Q ss_pred             CCcEEE
Q 019349          248 SGSLHV  253 (342)
Q Consensus       248 dg~i~v  253 (342)
                      .|-++|
T Consensus       484 ~gV~qv  489 (737)
T KOG3611|consen  484 SGVVQV  489 (737)
T ss_pred             CcEEEe
Confidence            886654

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.19  E-value=7.6  Score=31.18  Aligned_cols=29  Identities=21%  Similarity=0.338  Sum_probs=20.5

Q ss_pred             EEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      ..+|+||.||+    ||+++. ..|+|.+...+.
T Consensus         7 ~~~l~WS~Dg~----laV~t~-~~v~IL~~~~P~   35 (173)
T PF12657_consen    7 PNALAWSEDGQ----LAVATG-ESVHILDPQTPN   35 (173)
T ss_pred             CcCeeECCCCC----EEEEcC-CeEEEEeccCCc
Confidence            46799999997    666654 478888655444

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=82.58  E-value=4.9  Score=22.94  Aligned_cols=22  Identities=23%  Similarity=0.253  Sum_probs=16.1

Q ss_pred             cCCeeEEEECCCCCEEEEEeCC
Q 019349          179 QAPLAAIVLSSNGMYIATASEQ  200 (342)
Q Consensus       179 ~~~v~~i~~s~dg~~lat~s~d  200 (342)
                      ...-....|||||++|+-.+..
T Consensus         8 ~~~~~~p~~SpDGk~i~f~s~~   29 (39)
T PF07676_consen    8 PGDDGSPAWSPDGKYIYFTSNR   29 (39)
T ss_dssp             SSSEEEEEE-TTSSEEEEEEEC
T ss_pred             CccccCEEEecCCCEEEEEecC
Confidence            3456678899999998887755

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.80  E-value=35  Score=29.88  Aligned_cols=159  Identities=13%  Similarity=0.136  Sum_probs=91.7

Q ss_pred             CceEEEEEcCCeEEE--EECC-eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce
Q 019349           95 TSILAVRLNKKRLVI--VLRE-KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS  171 (342)
Q Consensus        95 ~~v~~i~~~~~~~~~--~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~  171 (342)
                      ..+.++.++|+...+  ..++ .-.++=...|++++++.... -...-++..-+++.+.++--  .++.+.++.+.....
T Consensus        86 ~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g-~~DpE~Ieyig~n~fvi~dE--R~~~l~~~~vd~~t~  162 (316)
T COG3204          86 ANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTG-FSDPETIEYIGGNQFVIVDE--RDRALYLFTVDADTT  162 (316)
T ss_pred             ccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccc-cCChhHeEEecCCEEEEEeh--hcceEEEEEEcCCcc
Confidence            358889999875433  3344 34444445678888874422 11122334445566666554  467788776654422


Q ss_pred             eE-------EEe--cc-cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec---cC-----cCceeEEEEEEe
Q 019349          172 HC-------EID--AH-QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR---RG-----TYPSTIFSLSFG  233 (342)
Q Consensus       172 ~~-------~~~--~h-~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~---~~-----~~~~~v~~l~fs  233 (342)
                      +.       ++.  .+ ......++|+|..+.|..+=+..- ++|+-+..+..--...   ..     ..-..|.++.|+
T Consensus       163 ~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P-~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         163 VISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNP-IGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             EEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCC-cEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence            11       111  12 446778999999888888877765 4777765333111110   00     001237778888


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      +...  ++|+-+.+++.+--.|.+..
T Consensus       242 ~~~~--~LLVLS~ESr~l~Evd~~G~  265 (316)
T COG3204         242 AITN--SLLVLSDESRRLLEVDLSGE  265 (316)
T ss_pred             CCCC--cEEEEecCCceEEEEecCCC
Confidence            7554  27777777777777776654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=81.39  E-value=30  Score=28.81  Aligned_cols=151  Identities=17%  Similarity=0.122  Sum_probs=80.7

Q ss_pred             ceEEEEEcC-CeEEEEE-CCeEEEEECC--CCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC-cc---EEEEE---
Q 019349           96 SILAVRLNK-KRLVIVL-REKTYIYDAN--TLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT-KG---SVLVY---  164 (342)
Q Consensus        96 ~v~~i~~~~-~~~~~~~-d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~g---~i~iw---  164 (342)
                      +...++..+ +.++++. ..+|.+|++.  ..+++..+.+-   ..+..+..+..|.++++--.+. ..   .+++|   
T Consensus        19 EP~~~c~~g~d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NW   95 (215)
T PF14761_consen   19 EPTAVCCGGPDALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNW   95 (215)
T ss_pred             CcceeeccCCceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEeecCCccceEEEEEEEh
Confidence            334455555 7777755 6799999997  33566677654   2355566666677888754211 12   56664   


Q ss_pred             Ecc--CCceeE-EEecc---------------------cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee-EE---
Q 019349          165 NVM--ELHSHC-EIDAH---------------------QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK-SY---  216 (342)
Q Consensus       165 d~~--~~~~~~-~~~~h---------------------~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~-~~---  216 (342)
                      +..  ..+++. .+-+|                     ..++.||+--|-..-|+.|+.+ ++ .+|.+..... ..   
T Consensus        96 r~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~-~l-~lf~l~~~~~~~~~~~  173 (215)
T PF14761_consen   96 RSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGN-KL-VLFTLKYQTIQSEKFS  173 (215)
T ss_pred             hhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCC-EE-EEEEEEEEEEeccccc
Confidence            332  112222 11121                     3356778877743345566654 44 5898764432 11   


Q ss_pred             --EeccC----cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          217 --SFRRG----TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       217 --~~~~~----~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                        .|...    ...-....++|.  +.   |+|..++ -.++++.+.
T Consensus       174 ~lDFe~~l~~~~~~~~p~~v~ic--~~---yiA~~s~-~ev~Vlkl~  214 (215)
T PF14761_consen  174 FLDFERSLIDHIDNFKPTQVAIC--EG---YIAVMSD-LEVLVLKLE  214 (215)
T ss_pred             EEechhhhhheecCceEEEEEEE--ee---EEEEecC-CEEEEEEEe
Confidence              12110    111124556665  33   7776664 477777653

>PF14157 YmzC: YmzC-like protein; PDB: 3KVP_E

Probab=81.28  E-value=6.3  Score=25.41  Aligned_cols=31  Identities=19%  Similarity=0.314  Sum_probs=24.4

Q ss_pred             cEEEEEEeCCcEEEEEEecCCCCeeeeEEEeeee
Q 019349          303 ASVSVITYNGYFVEYIFSINNCCESTWTLDREFN  336 (342)
Q Consensus       303 ~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~~~~  336 (342)
                      +..+..+.+|.|+||.+++.+.+   ..|.|.+.
T Consensus        30 N~Fav~~e~~~iKIfkyd~~tNe---i~L~KE~~   60 (63)
T PF14157_consen   30 NHFAVVDEDGQIKIFKYDEDTNE---ITLKKEFY   60 (63)
T ss_dssp             TEEEEE-ETTEEEEEEEETTTTE---EEEEEEEE
T ss_pred             CEEEEEecCCeEEEEEeCCCCCe---EEEEEeee
Confidence            67777899999999999998776   37777664

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=80.85  E-value=9.6  Score=26.86  Aligned_cols=50  Identities=18%  Similarity=0.282  Sum_probs=32.3

Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe-CCCcEEEEE
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS-EQGTIIRVF  207 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s-~dg~~irlw  207 (342)
                      .+|.+.-||..+++....+.+ -.--+.|++++|+.+|+.+= ...++.|.|
T Consensus        35 ~~GRll~ydp~t~~~~vl~~~-L~fpNGVals~d~~~vlv~Et~~~Ri~ryw   85 (89)
T PF03088_consen   35 PTGRLLRYDPSTKETTVLLDG-LYFPNGVALSPDESFVLVAETGRYRILRYW   85 (89)
T ss_dssp             --EEEEEEETTTTEEEEEEEE-ESSEEEEEE-TTSSEEEEEEGGGTEEEEEE
T ss_pred             CCcCEEEEECCCCeEEEehhC-CCccCeEEEcCCCCEEEEEeccCceEEEEE
Confidence            578999999999875444433 23458899999999777653 334555555

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=80.49  E-value=7.8  Score=37.52  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=28.2

Q ss_pred             CeeEEEECC----CCCEEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349          181 PLAAIVLSS----NGMYIATASEQGTIIRVFLVSEATKSYSF  218 (342)
Q Consensus       181 ~v~~i~~s~----dg~~lat~s~dg~~irlwd~~~~~~~~~~  218 (342)
                      ....++++.    +..+|++-+.|++ +|+||+.+++++...
T Consensus       216 ~~~~~~~~~~~~~~~~~l~tl~~D~~-LRiW~l~t~~~~~~~  256 (547)
T PF11715_consen  216 VAASLAVSSSEINDDTFLFTLSRDHT-LRIWSLETGQCLATI  256 (547)
T ss_dssp             -EEEEEE-----ETTTEEEEEETTSE-EEEEETTTTCEEEEE
T ss_pred             ccceEEEecceeCCCCEEEEEeCCCe-EEEEECCCCeEEEEe
Confidence            455666666    6789999999997 599999999996654

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
4av8_A	339	Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length		8e-08
3vu4_A	355	Crystal Structure Of Kluyvelomyces Marxianus Hsv2 L		1e-06

>pdb|4AV8|A Chain A, Kluyveromyces Lactis Hsv2 Complete Loop 6cd Length = 339

Iteration: 1
 Score = 54.7 bits (130), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 55/257 (21%), Positives = 101/257 (39%), Gaps = 26/257 (10%)
Query: 7   SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGA 66
           S P+    FNQD S   +ST   F I++    +    + +     + ML+ ++ +A V  
Sbjct: 14  SNPIVDYEFNQDQSCLIVSTPKSFDIYNVHPLKRIMSQEMPDAGTIRMLHRTNYIAFVST 73
Query: 67  GEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAIL 126
            ++       L +++      +  +    ++  + L+++ +V+   +   I+        
Sbjct: 74  KKE------LLHIWDDVKKQDITRVKLDAAVKDLFLSREFIVVSQGDVISIFKFGNPWNK 127
Query: 127 DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE--------IDAH 178
            T D      G+C F+  L    L        G +   +V  L +  E        + AH
Sbjct: 128 ITEDI--KFGGVCEFANGL----LVYSNEFNLGQI---HVTRLQTDAEQVVGKGVLVKAH 178
Query: 179 QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF 238
             P+  + L+  G  +AT S+ GT+IRVF          FRRG   ++I  + +      
Sbjct: 179 ANPVKMVRLNRKGDMVATCSQDGTLIRVFQTDNGVLVREFRRGLDRTSIIDMRWSPDGS- 237
Query: 239 QDILVATSSSGSLHVFS 255
              L   S   +LHVF 
Sbjct: 238 --KLAVVSDKWTLHVFE 252

>pdb|3VU4|A Chain A, Crystal Structure Of Kluyvelomyces Marxianus Hsv2 Length = 355

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 100/263 (38%), Gaps = 27/263 (10%)
Query: 7   SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGA 66
           S PV    FNQD S   LST   F+I++         + +   S V ML+ ++ +A V  
Sbjct: 19  SNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTG 78
Query: 67  GEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYD-ANTLA- 124
            ++       + +++      +  +     +  + L+++ +V+   +   ++   N    
Sbjct: 79  VKEV------VHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKR 132
Query: 125 ILDTIDTVPNLKGLCAFSPSL------------NACFLAVPASTTKGSVLVYNVMELHSH 172
           I D I       G+C FS  L            +   L    S T     V     L   
Sbjct: 133 ITDDI----RFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKG 188
Query: 173 CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF 232
             I AH  P+  + L+     +AT S+ GTIIRVF   +      FRRG   + +  + +
Sbjct: 189 VLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKW 248
Query: 233 GQSMQFQDILVATSSSGSLHVFS 255
                    L   S   +LHVF 
Sbjct: 249 STD---GSKLAVVSDKWTLHVFE 268

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	1e-66
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-11
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	8e-05
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	5e-04

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A Length = 355

 Score =  212 bits (542), Expect = 1e-66
 Identities = 66/354 (18%), Positives = 120/354 (33%), Gaps = 29/354 (8%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSL 60
           +     S PV    FNQD S   LST   F+I++         + +   S V ML+ ++ 
Sbjct: 13  VPENHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNY 72

Query: 61  LAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDA 120
           +A V            + +++      +  +     +  + L+++ +V+   +   ++  
Sbjct: 73  VAFVTGV------KEVVHIWDDVKKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKF 126

Query: 121 NTLAILDTIDTVPN-----LKGLCAFSPSLNACFLAVP-----ASTTKGSVLVYNVMELH 170
                  T D           GL  +S   N   + +       S T     V     L 
Sbjct: 127 GNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILG 186

Query: 171 SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL 230
               I AH  P+  + L+     +AT S+ GTIIRVF   +      FRRG   + +  +
Sbjct: 187 KGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDM 246

Query: 231 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH 290
            +         L   S   +LHVF     I   +  +  ++ G I  +         +  
Sbjct: 247 KWSTDGSK---LAVVSDKWTLHVFE----IFNDQDNKRHALKGWINMKYFQSEWSLCNFK 299

Query: 291 VLRNAFPAGVKRASVS------VITYNGYFVEYIFSINNCCESTWTLDREFNLL 338
           +  +    G K A +S      V  +      +    ++  E       +   L
Sbjct: 300 LSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDEMERWLIQMDQREQL 353

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 2e-11
 Identities = 72/423 (17%), Positives = 128/423 (30%), Gaps = 122/423 (28%)

Query: 1   MSNQSSSYPVFFVSFNQDNSGFALS--------TKDGFKIFDSSTGRLC--------Y-- 42
           +S Q      F     + N  F +S             +++     RL         Y  
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 43  ERAVGAFSIVEMLY---SSSLLAI---VGAGEQPSL------SPRRLCLFN--------- 81
            R      + + L     +  + I   +G+G+   +      S +  C  +         
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT-WVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 82  --TTTGTALRELNFLTSIL------------AVRLN----KKRLVIVLREKTYIYDANTL 123
              +  T L  L  L   +             ++L     +  L  +L+ K Y    N L
Sbjct: 191 NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY---ENCL 247

Query: 124 AILDTIDTVPNLKGLCAFSPSLNAC-----------FLAVPASTTKGSVLVYNVMELHS- 171
            +L   + V N K   AF+ S   C              + A+TT    L ++ M L   
Sbjct: 248 LVLL--N-VQNAKAWNAFNLS---CKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 172 ----------HCEIDA--HQA----PLA-AIVLSSNGMYIAT--------ASEQGTIIRV 206
                      C       +     P   +I+  S    +AT          +  TII  
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 207 FL----VSEATKSYS----FRRGTY-PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG 257
            L     +E  K +     F    + P+ + SL +   ++   ++V       LH +S  
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN----KLHKYS-- 415

Query: 258 FAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAF--PAGVKRASVSVITYNGYFV 315
             + ++    T SI    L   V    + A H  + + +  P       +     + YF 
Sbjct: 416 -LVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474

Query: 316 EYI 318
            +I
Sbjct: 475 SHI 477

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* Length = 1249

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 32/214 (14%), Positives = 67/214 (31%), Gaps = 28/214 (13%)

Query: 77  LCLFNTTTGTALRELN-FLTSILAVRL--NKKRLVIVLREKT-YIYDANTLAILDTIDTV 132
           L +F   TG  L ++      +L      +   +     +K   I+D+ T  ++ T D  
Sbjct: 639 LQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEH 698

Query: 133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGM 192
                 C F+   N   LA   S     + ++++ +      +  H   +     S +  
Sbjct: 699 SEQVNCCHFTNKSNHLLLAT-GSN-DFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDE 756

Query: 193 YIATASEQGTI----------IRVFLVSEATKSYSFRRGTYPSTIFSLSF---GQSMQFQ 239
            +A+ S  GT+           +   V     S           +   S+   G      
Sbjct: 757 LLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGD----- 811

Query: 240 DILVATSSSGSLHVFSP--GFAINQRRGGRTSSI 271
              +  ++   + +F       + +   G  S+I
Sbjct: 812 --KIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI 843

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 343

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 33/274 (12%), Positives = 88/274 (32%), Gaps = 35/274 (12%)

Query: 2   SNQSSSYPVFFVSFNQDNSGFALSTKDG----FKIFDSSTGRL--CYERAVGAFSIVEML 55
           + ++  Y     S   D        +DG     ++ DS T           G      + 
Sbjct: 31  NIKTFPYKELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGGEHPAIIS 90

Query: 56  YSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR--ELNFLTSILAVR----LNKKRLVI 109
                  ++           ++ + ++ T   LR  E++    I+ +     +N +  + 
Sbjct: 91  RGPCNRLLLLY------PGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIW 144

Query: 110 VLREKTYI---YDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV 166
                T     Y+ ++  I+ +  +              ++  LA    +  G + VYN+
Sbjct: 145 ADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSG-VLHK--DSLLLA--LYSPDGILDVYNL 199

Query: 167 MELHSHCEID--AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS---FRRG 221
                         +A +  +  + NG ++    +Q   +  F + +   + +   +   
Sbjct: 200 SSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQT--VVCFDLRKDVGTLAYPTYTIP 257

Query: 222 TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 255
            + +   +     S +   ++  ++ S SL ++ 
Sbjct: 258 EFKTGTVTYDIDDSGKN--MIAYSNESNSLTIYK 289

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.98
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.98
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.98
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.97
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.97
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.97
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.97
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.97
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.97
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.96
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.96
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.96
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.95
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.95
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.91
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.9
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.9
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.87
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.86
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.86
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.85
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.84
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.83
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.83
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.83
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.82
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.82
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.8
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.8
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.79
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.79
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.78
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.78
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.76
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.76
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.76
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.76
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.72
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.72
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.71
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.71
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.63
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.62
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.61
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.61
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.61
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.61
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.59
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.58
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.56
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.55
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.54
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.53
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.53
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.52
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.52
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.51
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.5
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.48
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.48
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.48
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.47
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.47
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.46
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.46
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.43
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.41
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.39
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.38
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.37
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.35
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.34
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.31
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.31
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.31
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.31
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.29
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.29
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.26
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.24
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.23
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.23
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.19
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.18
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.18
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.18
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.17
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.15
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.15
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.13
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.13
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.13
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.12
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.1
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.1
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.1
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.09
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.09
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.08
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.04
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.04
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.04
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.03
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.03
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.99
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.95
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.93
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	98.91
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.87
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.83
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.81
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.79
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.79
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.76
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.75
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.74
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.72
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.71
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.66
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.62
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.61
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.61
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.59
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.58
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.54
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.53
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.48
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	98.47
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	98.43
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.42
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.37
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.36
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.34
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.34
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.29
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.17
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.15
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.08
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.05
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.03
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.99
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.95
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.94
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.93
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	97.9
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.89
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.88
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.85
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.81
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	97.8
2p4o_A	306	Hypothetical protein; putative lactonase, structur	97.77
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.68
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.67
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.6
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.59
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.57
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.56
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.55
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.55
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.53
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.48
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.39
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.34
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	97.27
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.24
3ott_A	758	Two-component system sensor histidine kinase; beta	97.15
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.03
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	96.99
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	96.87
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.84
3kya_A	496	Putative phosphatase; structural genomics, joint c	96.84
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	96.74
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	96.68
3ott_A	758	Two-component system sensor histidine kinase; beta	96.58
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.48
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.47
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.43
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.26
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.22
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.04
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	96.0
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.98
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	95.87
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	95.85
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	95.76
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	95.73
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.72
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.46
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	95.39
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	95.35
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.9
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	94.74
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	94.2
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	93.88
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	92.42
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	92.26
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	92.17
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	91.85
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	91.73
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.54
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	91.24
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	91.12
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	90.86
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	90.46
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.38
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	90.26
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.12
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	89.68
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	88.5
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	88.38
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	87.77
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	87.55
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	85.31
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	84.48
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	83.96
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	83.59
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	83.35
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	80.41

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=100.00  E-value=2.5e-43  Score=319.00  Aligned_cols=308  Identities=19%  Similarity=0.235  Sum_probs=247.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      ..+..+|++++|+|||++||+|+++++++||+++++.....+.+++..+.+.++++.+++++++      +++|++||..
T Consensus        16 ~~h~~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~v~iWd~~   89 (355)
T 3vu4_A           16 NHVSNPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLSKVRMLHRTNYVAFVTGV------KEVVHIWDDV   89 (355)
T ss_dssp             ---CCCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSCCCEEEECTTSSEEEEECSS------TTEEEEEETT
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCCeEEEEEcCCCCEEEEEECC------ccEEEEEECC
Confidence            4678899999999999999999999999999999887777666678889999999999888874      7899999999


Q ss_pred             CCcEEEEEecCCceEEEEEcCCeEEEEECCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEEEe-CCCCccEE
Q 019349           84 TGTALRELNFLTSILAVRLNKKRLVIVLREKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVP-ASTTKGSV  161 (342)
Q Consensus        84 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~g~i  161 (342)
                      +++++..+.++..|.++.++++.++++.++.|++||+.++ +.+..+..   +.+++++++    .+++++ |. .+|.|
T Consensus        90 ~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~----~~la~~sg~-~~g~v  161 (355)
T 3vu4_A           90 KKQDVSRIKVDAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN----GLLVYSNEF-NLGQI  161 (355)
T ss_dssp             TTEEEEEEECSSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET----TEEEEEESS-CTTCE
T ss_pred             CCcEEEEEECCCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEecc---CCceEEEEc----cEEEEeCCC-cCcEE
Confidence            9999999999999999999999999999999999999988 77766654   456677765    477776 54 69999


Q ss_pred             EEEEccCCc---------------e-eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCce
Q 019349          162 LVYNVMELH---------------S-HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  225 (342)
Q Consensus       162 ~iwd~~~~~---------------~-~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~  225 (342)
                      ++||+.+++               + +..+.+|..+|++++|+|+|++||+||.||++|++||+++++.+..+..+.+..
T Consensus       162 ~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~  241 (355)
T 3vu4_A          162 HITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRA  241 (355)
T ss_dssp             EEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCS
T ss_pred             EEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCC
Confidence            999998765               2 678899999999999999999999999999845899999999999997543567


Q ss_pred             eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccccccccccccee------eeccCCC
Q 019349          226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVL------RNAFPAG  299 (342)
Q Consensus       226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~  299 (342)
                      .|.+++|+||++   +|++++.|++|+|||++.+...+.    ..+-..++|..+...|+.....+.      ...+++.
T Consensus       242 ~v~~~~~s~~~~---~l~s~s~d~~v~iw~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  314 (355)
T 3vu4_A          242 DVVDMKWSTDGS---KLAVVSDKWTLHVFEIFNDQDNKR----HALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWI  314 (355)
T ss_dssp             CEEEEEECTTSC---EEEEEETTCEEEEEESSCCSCCCS----EETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEES
T ss_pred             cEEEEEECCCCC---EEEEEECCCEEEEEEccCCCCccc----ccccceeeccccccccceeEEEeccCCCCCceEEEEe
Confidence            799999999999   999999999999999987643321    111111344444555654332111      1334567


Q ss_pred             ccccEEEEEEeCCcEEEEEEecCCCCeeeeEEE
Q 019349          300 VKRASVSVITYNGYFVEYIFSINNCCESTWTLD  332 (342)
Q Consensus       300 ~~~~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~  332 (342)
                      ++++.|++++.||.+++|++...+..+..|...
T Consensus       315 ~d~~~l~~~~~dg~~~~~~~~~~~~~~~~~~~~  347 (355)
T 3vu4_A          315 SESSLVVVWPHTRMIETFKVVFDDEMERWLIQM  347 (355)
T ss_dssp             SSSEEEEEETTTTEEEEEEEEEETTTTEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEEEEcCCCCceEEEee
Confidence            777899999999999999998877665545443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=1.2e-38  Score=286.53  Aligned_cols=279  Identities=17%  Similarity=0.183  Sum_probs=223.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..|..+|++++|+||+++|++|+.|+ +++||+.+++.+...  +...+..+.+.+++++++..+.       |+.|++|
T Consensus        52 ~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~-------d~~v~iw  124 (340)
T 1got_B           52 RGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL-------DNICSIY  124 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEET-------TCEEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeC-------CCeEEEE
Confidence            46788999999999999999999887 699999988766554  3456777888888888877664       8999999


Q ss_pred             ECCCCc----EEEEEe-cCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           81 NTTTGT----ALRELN-FLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        81 d~~~~~----~~~~~~-~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      |+.+++    ....+. +...|.++.+.++..+++.  |++|++||+.+++.+..+..+..  .+.+++++|++.+++++
T Consensus       125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG--DVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             ETTTCSBSCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred             ECccCCCcceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCC--ceEEEEECCCCCEEEEE
Confidence            998753    233333 4568999999776554444  88999999999998888865544  57778888888899988


Q ss_pred             CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs  233 (342)
                      +  .||.|++||+++++++..+.+|..+|++++|+|+|++|++|+.||+ |++||+++++.+..+........|.+++|+
T Consensus       203 ~--~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~-v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s  279 (340)
T 1got_B          203 A--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             E--TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             e--CCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCc-EEEEECCCCcEEEEEccCCcccceEEEEEC
Confidence            8  6899999999999999999999999999999999999999999998 589999999888777533333469999999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCc
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY  313 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  313 (342)
                      |+++   +|++|+.||+|++||+........       +.+              |...+..+.+.+++..|++++.||.
T Consensus       280 ~~g~---~l~~g~~d~~i~vwd~~~~~~~~~-------~~~--------------h~~~v~~~~~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          280 KSGR---LLLAGYDDFNCNVWDALKADRAGV-------LAG--------------HDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             TTSS---EEEEEETTSEEEEEETTTCCEEEE-------EEC--------------CSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             CCCC---EEEEECCCCeEEEEEcccCcEeeE-------eec--------------CCCcEEEEEEcCCCCEEEEEcCCcc
Confidence            9999   999999999999999876543221       111              1112223344555588999999999


Q ss_pred             EEEEE
Q 019349          314 FVEYI  318 (342)
Q Consensus       314 v~~~~  318 (342)
                      |++|+
T Consensus       336 i~iWd  340 (340)
T 1got_B          336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99994

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=5.2e-39  Score=286.71  Aligned_cols=279  Identities=14%  Similarity=0.168  Sum_probs=222.5

Q ss_pred             CCCCCCCeEEEEEcCC----CCEEEEEcCCc-EEEEeCCCCcEEE--E--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCC
Q 019349            3 NQSSSYPVFFVSFNQD----NSGFALSTKDG-FKIFDSSTGRLCY--E--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d----~~~la~g~~~g-~~v~d~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (342)
                      .+.|..+|++++|+|+    +.+|++|+.|+ ++||++...+...  .  .+...+..+.+.++...++..+.       
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~-------  100 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSL-------  100 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEET-------
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeC-------
Confidence            3578999999999985    56899998887 6999988775432  2  34456777777777777766654       


Q ss_pred             CCeEEEEECCCCcEEEEEec-CCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccE
Q 019349           74 PRRLCLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
                      |++|++||+.+++++..+.. +..+.+++|+|+...++.   ++.|++|++++++....+..+..  .+.+++++|++.+
T Consensus       101 D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~--~v~~~~~spdg~~  178 (321)
T 3ow8_A          101 DAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGK--FILSIAYSPDGKY  178 (321)
T ss_dssp             TSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSS--CEEEEEECTTSSE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCc--eEEEEEECCCCCE
Confidence            89999999999999888765 447889999987544443   78999999999988888766543  5777888899999


Q ss_pred             EEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349          150 LAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  229 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~  229 (342)
                      |++++  .||.|++||+++++.+..+.+|..+|++++|+|++++|++|+.||+ |++||+++++.+..+..  +...|.+
T Consensus       179 lasg~--~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~  253 (321)
T 3ow8_A          179 LASGA--IDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGY-IKIYDVQHANLAGTLSG--HASWVLN  253 (321)
T ss_dssp             EEEEE--TTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSC-EEEEETTTCCEEEEECC--CSSCEEE
T ss_pred             EEEEc--CCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCe-EEEEECCCcceeEEEcC--CCCceEE
Confidence            99988  6899999999999999999999999999999999999999999998 58999999998888754  3556999


Q ss_pred             EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349          230 LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  309 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (342)
                      ++|+|+++   +|++++.|++|+|||+++.+.....       ..+              ...+..+.+.+++..|++++
T Consensus       254 ~~~sp~~~---~l~s~s~D~~v~iwd~~~~~~~~~~-------~~h--------------~~~v~~v~~s~~g~~l~s~~  309 (321)
T 3ow8_A          254 VAFCPDDT---HFVSSSSDKSVKVWDVGTRTCVHTF-------FDH--------------QDQVWGVKYNGNGSKIVSVG  309 (321)
T ss_dssp             EEECTTSS---EEEEEETTSCEEEEETTTTEEEEEE-------CCC--------------SSCEEEEEECTTSSEEEEEE
T ss_pred             EEECCCCC---EEEEEeCCCcEEEEeCCCCEEEEEE-------cCC--------------CCcEEEEEECCCCCEEEEEe
Confidence            99999999   9999999999999999876543211       111              11122233344558999999


Q ss_pred             eCCcEEEEEE
Q 019349          310 YNGYFVEYIF  319 (342)
Q Consensus       310 ~dg~v~~~~~  319 (342)
                      .||.|++|+.
T Consensus       310 ~d~~i~vwd~  319 (321)
T 3ow8_A          310 DDQEIHIYDC  319 (321)
T ss_dssp             TTCCEEEEEC
T ss_pred             CCCeEEEEeC
Confidence            9999999985

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=8.2e-39  Score=294.92  Aligned_cols=277  Identities=14%  Similarity=0.155  Sum_probs=226.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .|..+|++++|+|++.+|++|+.|+ +++||+.+++.....  +...+..+.+.++++.++.++.       |++|++||
T Consensus       106 gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~-------D~~i~iwd  178 (410)
T 1vyh_C          106 GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA-------DMTIKLWD  178 (410)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET-------TSCCCEEE
T ss_pred             ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeC-------CCeEEEEe
Confidence            5778999999999999999998887 699999998765443  4567788888888887777664       89999999


Q ss_pred             CCCCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           82 TTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        82 ~~~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      +.+++++..+. +...|.+++|+++.  ++.++ |++|++||+.+++.+..+..+..  .+.++.+++++.++++++  .
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~~~~g~~l~s~s--~  254 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIASCS--N  254 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEEEE--T
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCc--cEEEEEECCCCCEEEEEc--C
Confidence            99999888775 44589999998864  44444 88999999999999988876544  567778888899999988  6


Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCC--------------------CCEEEEEeCCCcEEEEEEcCCCeeEEE
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSN--------------------GMYIATASEQGTIIRVFLVSEATKSYS  217 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~d--------------------g~~lat~s~dg~~irlwd~~~~~~~~~  217 (342)
                      ||+|++||+.++++...+.+|...|.+++|+|+                    |.+|++|+.||+ |++||+++++.+..
T Consensus       255 D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~-i~iwd~~~~~~~~~  333 (410)
T 1vyh_C          255 DQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCLMT  333 (410)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEEEEE
T ss_pred             CCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCe-EEEEECCCCceEEE
Confidence            899999999999999999999999999999996                    779999999997 58999999999988


Q ss_pred             eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccC
Q 019349          218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFP  297 (342)
Q Consensus       218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (342)
                      +..+  ...|.+++|+|+++   +|++++.||+|++||++..+....       +..+              ...+..+.
T Consensus       334 ~~~h--~~~v~~v~~~~~g~---~l~s~s~D~~i~vwd~~~~~~~~~-------~~~h--------------~~~v~~l~  387 (410)
T 1vyh_C          334 LVGH--DNWVRGVLFHSGGK---FILSCADDKTLRVWDYKNKRCMKT-------LNAH--------------EHFVTSLD  387 (410)
T ss_dssp             EECC--SSCEEEEEECSSSS---CEEEEETTTEEEEECCTTSCCCEE-------EECC--------------SSCEEEEE
T ss_pred             EECC--CCcEEEEEEcCCCC---EEEEEeCCCeEEEEECCCCceEEE-------EcCC--------------CCcEEEEE
Confidence            8643  55699999999999   999999999999999976654321       1111              11122333


Q ss_pred             CCccccEEEEEEeCCcEEEEEE
Q 019349          298 AGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       298 ~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                      +.++++.|++++.||.|++|++
T Consensus       388 ~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          388 FHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ECSSSSCEEEEETTSEEEEEC-
T ss_pred             EcCCCCEEEEEeCCCcEEEEeC
Confidence            4455588999999999999975

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.2e-37  Score=281.55  Aligned_cols=281  Identities=11%  Similarity=0.106  Sum_probs=222.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..|..+|++++|+||+++|++|+.|+ +++||..+++......  ...+..+.+.+++..++..+.       |+++++|
T Consensus        61 ~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~-------d~~i~v~  133 (354)
T 2pbi_B           61 KGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGL-------DNKCSVY  133 (354)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEEST-------TSEEEEE
T ss_pred             cCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeC-------CCCEEEE
Confidence            46888999999999999999999988 5999998887655443  345667788888888776654       8999999


Q ss_pred             ECCCCc------EEEEE-ecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349           81 NTTTGT------ALREL-NFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        81 d~~~~~------~~~~~-~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                      ++....      ....+ .+...|.++.|+++.  ++.++ |++|++||+++++.+..+..|......+++++++++.++
T Consensus       134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l  213 (354)
T 2pbi_B          134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTF  213 (354)
T ss_dssp             ECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEE
T ss_pred             EEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEE
Confidence            986431      22233 355689999998874  44444 889999999999999999877765555566666677889


Q ss_pred             EEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEE
Q 019349          151 AVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL  230 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l  230 (342)
                      ++++  .||.|++||+++++++..+.+|..+|++++|+|++++||+|+.||+ ||+||+++++.+..+........+.++
T Consensus       214 ~sgs--~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-v~lwd~~~~~~~~~~~~~~~~~~~~~~  290 (354)
T 2pbi_B          214 VSGG--CDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDAT-CRLYDLRADREVAIYSKESIIFGASSV  290 (354)
T ss_dssp             EEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred             EEEe--CCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCe-EEEEECCCCcEEEEEcCCCcccceeEE
Confidence            9888  6899999999999999999999999999999999999999999998 599999999887776543333458999


Q ss_pred             EEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe
Q 019349          231 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY  310 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (342)
                      +|+|++.   +|++++.|++|++||+.++.....       +.++              ...+..+.+.+++.+|++++.
T Consensus       291 ~~s~~g~---~l~~g~~d~~i~vwd~~~~~~~~~-------l~~h--------------~~~v~~l~~spdg~~l~sgs~  346 (354)
T 2pbi_B          291 DFSLSGR---LLFAGYNDYTINVWDVLKGSRVSI-------LFGH--------------ENRVSTLRVSPDGTAFCSGSW  346 (354)
T ss_dssp             EECTTSS---EEEEEETTSCEEEEETTTCSEEEE-------ECCC--------------SSCEEEEEECTTSSCEEEEET
T ss_pred             EEeCCCC---EEEEEECCCcEEEEECCCCceEEE-------EECC--------------CCcEEEEEECCCCCEEEEEcC
Confidence            9999999   999999999999999976653221       1111              111223334455589999999


Q ss_pred             CCcEEEEE
Q 019349          311 NGYFVEYI  318 (342)
Q Consensus       311 dg~v~~~~  318 (342)
                      ||.|++|+
T Consensus       347 D~~v~vW~  354 (354)
T 2pbi_B          347 DHTLRVWA  354 (354)
T ss_dssp             TSEEEEEC
T ss_pred             CCCEEecC
Confidence            99999994

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=7.2e-37  Score=280.30  Aligned_cols=285  Identities=12%  Similarity=0.117  Sum_probs=216.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeC--------------------CEEEEEEcCCCCeEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVG--------------------AFSIVEMLYSSSLLAIV   64 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~   64 (342)
                      .+...|++++|+|||++||+|+++.+++|++.+++.+.....+                    .+..+.+.++++.++..
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~  141 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  141 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEE
Confidence            3778899999999999999999888999999998776543221                    25667777777887776


Q ss_pred             cCCCCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEE
Q 019349           65 GAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCA  140 (342)
Q Consensus        65 ~~g~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  140 (342)
                      +.       |++|++||+.+++.+..+. +...|.+++|+++.  ++.++ |++|++||+++++....+..+   ..+.+
T Consensus       142 ~~-------d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~---~~v~~  211 (393)
T 1erj_A          142 AE-------DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIE---DGVTT  211 (393)
T ss_dssp             ET-------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEEE
T ss_pred             cC-------CCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcC---CCcEE
Confidence            64       8999999999999888776 45589999998764  44444 889999999999887777543   34666


Q ss_pred             EeeCC-CccEEEEeCCCCccEEEEEEccCCceeEEE-------ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349          141 FSPSL-NACFLAVPASTTKGSVLVYNVMELHSHCEI-------DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       141 ~~~~~-~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~-------~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~  212 (342)
                      ++.+| ++.++++++  .||.|++||+++++.+..+       .+|...|.+++|+|+|++|++|+.||+ |++||+++.
T Consensus       212 ~~~~~~~~~~l~~~s--~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~-v~~wd~~~~  288 (393)
T 1erj_A          212 VAVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNA  288 (393)
T ss_dssp             EEECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC---
T ss_pred             EEEECCCCCEEEEEc--CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCE-EEEEECCCC
Confidence            67776 778888887  6899999999998877766       579999999999999999999999997 589999764


Q ss_pred             e------------eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccc
Q 019349          213 T------------KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESV  280 (342)
Q Consensus       213 ~------------~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~  280 (342)
                      .            ....+..  +...|.+++|+|++.   +|++++.|++|++||+++++....       +.++.....
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~~~~~~---~l~sgs~D~~v~iwd~~~~~~~~~-------l~~h~~~v~  356 (393)
T 1erj_A          289 NNKSDSKTPNSGTCEVTYIG--HKDFVLSVATTQNDE---YILSGSKDRGVLFWDKKSGNPLLM-------LQGHRNSVI  356 (393)
T ss_dssp             ------------CEEEEEEC--CSSCEEEEEECGGGC---EEEEEETTSEEEEEETTTCCEEEE-------EECCSSCEE
T ss_pred             CCcccccCCCCCcceEEEec--ccCcEEEEEECCCCC---EEEEEeCCCeEEEEECCCCeEEEE-------ECCCCCCEE
Confidence            3            2333332  345699999999999   999999999999999987654321       111111111


Q ss_pred             cccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          281 NEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       281 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      ...|.+..        .+.++++.|++++.||.|++|++...
T Consensus       357 ~v~~~~~~--------~~~p~~~~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          357 SVAVANGS--------SLGPEYNVFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             EEEECSSC--------TTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred             EEEecCCc--------CcCCCCCEEEEECCCCcEEECccccc
Confidence            22233211        22445688999999999999998754

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=2.7e-37  Score=278.15  Aligned_cols=278  Identities=9%  Similarity=0.054  Sum_probs=201.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCC------------CcE-EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSST------------GRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSL   72 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~------------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   72 (342)
                      ++..|.+++|+|||++|++++++.+|+||...            +.. ....+...+..+.+..+ +.++..+       
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~sd~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~l~~~s-------  100 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGE-RGILVAS-------  100 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEECCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETT-TEEEEEE-------
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCC-CeEEEEE-------
Confidence            45679999999999999999987778886211            011 11123356777777665 4455444       


Q ss_pred             CCCeEEEEECCCCcEEEEE-----ecCCceEEEEEcCCeEEE--EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349           73 SPRRLCLFNTTTGTALREL-----NFLTSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS  144 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~-----~~~~~v~~i~~~~~~~~~--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  144 (342)
                      .|++|+|||+.+++.+...     .+...|.+++|+++...+  ++ |++|++||+++++.+..+..|..  .+.+++++
T Consensus       101 ~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~--~V~~~~~~  178 (344)
T 4gqb_B          101 DSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA--QVTCVAAS  178 (344)
T ss_dssp             TTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEEC
T ss_pred             CCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC--ceEEEEec
Confidence            4899999999998765443     345689999999875433  34 88999999999999999877655  46666666


Q ss_pred             CCc-cEEEEeCCCCccEEEEEEccCCceeEEEe--cccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349          145 LNA-CFLAVPASTTKGSVLVYNVMELHSHCEID--AHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRR  220 (342)
Q Consensus       145 ~~~-~~l~~~~~~~~g~i~iwd~~~~~~~~~~~--~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~  220 (342)
                      +++ .++++++  .||+|++||++++++...+.  .|...+++++|+| ++++||+|+.||+ |++||+++++.+.++..
T Consensus       179 ~~~~~~l~s~s--~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~-v~~wd~~~~~~~~~~~~  255 (344)
T 4gqb_B          179 PHKDSVFLSCS--EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGT-VSLVDTKSTSCVLSSAV  255 (344)
T ss_dssp             SSCTTEEEEEE--TTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSE-EEEEESCC--CCEEEEC
T ss_pred             CCCCCceeeec--cccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCc-EEEEECCCCcEEEEEcC
Confidence            665 3667776  68999999999999887764  4667899999999 5678999999997 58999999999988864


Q ss_pred             CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCc
Q 019349          221 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGV  300 (342)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (342)
                      +  ...|++++|+|++.  .+||+++.|++|+|||+++++...        +.++........|+|.+            
T Consensus       256 h--~~~v~~v~fsp~g~--~~lasgs~D~~i~vwd~~~~~~~~--------~~~H~~~V~~v~~sp~~------------  311 (344)
T 4gqb_B          256 H--SQCVTGLVFSPHSV--PFLASLSEDCSLAVLDSSLSELFR--------SQAHRDFVRDATWSPLN------------  311 (344)
T ss_dssp             C--SSCEEEEEECSSSS--CCEEEEETTSCEEEECTTCCEEEE--------ECCCSSCEEEEEECSSS------------
T ss_pred             C--CCCEEEEEEccCCC--eEEEEEeCCCeEEEEECCCCcEEE--------EcCCCCCEEEEEEeCCC------------
Confidence            3  55699999999984  279999999999999987654321        11111111223344433            


Q ss_pred             ccc-EEEEEEeCCcEEEEEEecC
Q 019349          301 KRA-SVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       301 ~~~-~l~~~~~dg~v~~~~~~~~  322 (342)
                        . .|++++.||+|++|+++.+
T Consensus       312 --~~llas~s~D~~v~~w~v~~~  332 (344)
T 4gqb_B          312 --HSLLTTVGWDHQVVHHVVPTE  332 (344)
T ss_dssp             --TTEEEEEETTSCEEEEECCC-
T ss_pred             --CeEEEEEcCCCeEEEEECCCC
Confidence              4 4567889999999998754

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.7e-36  Score=266.08  Aligned_cols=241  Identities=11%  Similarity=0.119  Sum_probs=198.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..+..+|++++|+|++++|++|+.++ +++||+.+++.+....  ...+..+.+.++.+.++..+.       |++|++|
T Consensus        10 ~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~-------d~~i~vw   82 (304)
T 2ynn_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-------DFRIRVF   82 (304)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-------TSEEEEE
T ss_pred             cCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECC-------CCEEEEE
Confidence            35778999999999999999998887 6999999987765543  456777888888888877764       8999999


Q ss_pred             ECCCCcEEEEEec-CCceEEEEEcCCeE--EEEE-CCeEEEEECCCCc-eeeEEeCCCCCceEEEEeeCC-CccEEEEeC
Q 019349           81 NTTTGTALRELNF-LTSILAVRLNKKRL--VIVL-REKTYIYDANTLA-ILDTIDTVPNLKGLCAFSPSL-NACFLAVPA  154 (342)
Q Consensus        81 d~~~~~~~~~~~~-~~~v~~i~~~~~~~--~~~~-d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~  154 (342)
                      |+.+++++..+.. ...|.+++++|+..  +.++ |++|++||++++. +...+..+.  ..+.+++++| ++..+++++
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~~l~sgs  160 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHE--HFVMCVAFNPKDPSTFASGC  160 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCC--SCEEEEEECTTCTTEEEEEE
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccC--CcEEEEEECCCCCCEEEEEe
Confidence            9999999988864 55899999998753  3344 8899999998874 445555444  3567777777 567888887


Q ss_pred             CCCccEEEEEEccCCceeEEEe-cccCCeeEEEECC--CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEE
Q 019349          155 STTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  231 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~--dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~  231 (342)
                        .||+|++||+.+..+...+. +|...|..+.|+|  ++.+|++|+.||+ |++||+++++++..+..+  ...|.+++
T Consensus       161 --~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~-i~iWd~~~~~~~~~~~~h--~~~v~~~~  235 (304)
T 2ynn_A          161 --LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEGH--MSNVSFAV  235 (304)
T ss_dssp             --TTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSE-EEEEETTTTEEEEEEECC--SSCEEEEE
T ss_pred             --CCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCe-EEEEeCCCCccceeeCCC--CCCEEEEE
Confidence              68999999998887766654 5678899999987  7889999999997 599999999999988643  45699999


Q ss_pred             EecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          232 FGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      |+|++.   +|++++.||+|++||+++.+.
T Consensus       236 ~~p~~~---~l~s~s~Dg~i~iWd~~~~~~  262 (304)
T 2ynn_A          236 FHPTLP---IIISGSEDGTLKIWNSSTYKV  262 (304)
T ss_dssp             ECSSSS---EEEEEETTSCEEEEETTTCCE
T ss_pred             ECCCCC---EEEEEcCCCeEEEEECCCCce
Confidence            999999   999999999999999987654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=4.9e-36  Score=267.12  Aligned_cols=286  Identities=11%  Similarity=0.126  Sum_probs=214.8

Q ss_pred             CCCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEeCCCCc-----EE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCC
Q 019349            3 NQSSSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGR-----LC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~-~~la~g~~~g-~~v~d~~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (342)
                      ...|.++|++++|+|++ ++|++|+.|+ +++|++....     .+  +..|.+.+..+.+.+++++++.++.       
T Consensus        13 l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~-------   85 (319)
T 3frx_A           13 LEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASW-------   85 (319)
T ss_dssp             ECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEET-------
T ss_pred             EccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeC-------
Confidence            35789999999999966 7899998887 6999986421     12  3345567888888888888877764       


Q ss_pred             CCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCeEE--EEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC----
Q 019349           74 PRRLCLFNTTTGTALRELN-FLTSILAVRLNKKRLV--IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL----  145 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~--~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~----  145 (342)
                      |++|++||+.+++++..+. +...|.+++++++...  .++ |++|++||++. +.+..+..+..  .+.++...|    
T Consensus        86 D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~--~v~~~~~~~~~~~  162 (319)
T 3frx_A           86 DKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG-QCLATLLGHND--WVSQVRVVPNEKA  162 (319)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS-CEEEEECCCSS--CEEEEEECCC---
T ss_pred             CCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC-CeEEEEeccCC--cEEEEEEccCCCC
Confidence            8999999999999988876 4568999999887533  333 88999999974 45566655544  344455544    


Q ss_pred             --CccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349          146 --NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       146 --~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~  223 (342)
                        ++..+++++  .|+.|++||+++.+....+.+|..+|++++|+|+|++|++|+.||+ |++||+.+++.+..+..   
T Consensus       163 ~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~-i~iwd~~~~~~~~~~~~---  236 (319)
T 3frx_A          163 DDDSVTIISAG--NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGE-IMLWNLAAKKAMYTLSA---  236 (319)
T ss_dssp             ---CCEEEEEE--TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---
T ss_pred             CCCccEEEEEe--CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEecC---
Confidence              344777777  6899999999999999999999999999999999999999999997 58999999999888853   


Q ss_pred             ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCc-cccccccccccccccccccccceeeeccCCCccc
Q 019349          224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRT-SSILGSILPESVNEVLDPADHHVLRNAFPAGVKR  302 (342)
Q Consensus       224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (342)
                      ...|.+++|+|++.   +|++++.+ .+++|+++........... ..+....              ...+..+++.|++
T Consensus       237 ~~~v~~~~~sp~~~---~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~~~~~spdg  298 (319)
T 3frx_A          237 QDEVFSLAFSPNRY---WLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAA--------------EPHAVSLAWSADG  298 (319)
T ss_dssp             CSCEEEEEECSSSS---EEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGG--------------CCCEEEEEECTTS
T ss_pred             CCcEEEEEEcCCCC---EEEEEcCC-CcEEEEeCcCeeeeccCccccccccCc--------------CcceeEEEECCCC
Confidence            34699999999998   88877754 5999998765432110000 0000001              1111233445556


Q ss_pred             cEEEEEEeCCcEEEEEEecC
Q 019349          303 ASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       303 ~~l~~~~~dg~v~~~~~~~~  322 (342)
                      .+|++++.||.|++|++...
T Consensus       299 ~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          299 QTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             SEEEEEETTSCEEEEEEEEC
T ss_pred             CEEEEeecCceEEEEEEeec
Confidence            89999999999999998753

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=7.9e-37  Score=278.79  Aligned_cols=288  Identities=15%  Similarity=0.180  Sum_probs=215.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..|..+|++++|+|++++|++|+.|+ ++|||+.+++.....  +...+..+.+.++++.++.++       .|+.+++|
T Consensus        63 ~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~-------~d~~v~iw  135 (380)
T 3iz6_a           63 QGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGG-------LDSACSIF  135 (380)
T ss_dssp             CCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECC-------SSSCCEEE
T ss_pred             cccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEee-------CCCcEEEE
Confidence            46889999999999999999999887 699999998766544  345566677878877776655       48999999


Q ss_pred             ECCCCcE-------EEEE-ecCCceEEEEEcCC---eEEEEE-CCeEEEEECCCCceeeEEeC---CCCCceEEEEeeCC
Q 019349           81 NTTTGTA-------LREL-NFLTSILAVRLNKK---RLVIVL-REKTYIYDANTLAILDTIDT---VPNLKGLCAFSPSL  145 (342)
Q Consensus        81 d~~~~~~-------~~~~-~~~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~  145 (342)
                      |+.+...       ...+ .+...|.++.+.++   .++.++ |++|++||+.+++.+..+..   ..+...+.++++++
T Consensus       136 ~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          136 NLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             ECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             ECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence            9865321       1122 23446788888764   355555 88999999999988877632   12334566777655


Q ss_pred             -CccEEEEeCCCCccEEEEEEcc-CCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349          146 -NACFLAVPASTTKGSVLVYNVM-ELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       146 -~~~~l~~~~~~~~g~i~iwd~~-~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~  223 (342)
                       ++.++++++  .||+|++||++ ..+.+..+.+|..+|++++|+|+|++|+|||.||+ ||+||+++++.+..+.....
T Consensus       216 ~~~~~l~sgs--~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~-i~lwd~~~~~~~~~~~~~~~  292 (380)
T 3iz6_a          216 LNANMFISGS--CDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGT-CRLFDMRTGHQLQVYNREPD  292 (380)
T ss_dssp             SSCCEEEEEE--TTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSC-EEEEETTTTEEEEEECCCCS
T ss_pred             CCCCEEEEEE--CCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCe-EEEEECCCCcEEEEeccccc
Confidence             667888887  68999999998 45778889999999999999999999999999998 58999999998887754321


Q ss_pred             -----ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCC
Q 019349          224 -----PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPA  298 (342)
Q Consensus       224 -----~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (342)
                           ...|.+++|+|+++   +|++|+.||+|++||+...+....       +.....          .|...+..+.+
T Consensus       293 ~~~~~~~~v~~~~~s~~g~---~l~~g~~dg~i~vwd~~~~~~~~~-------~~~~~~----------~h~~~v~~l~~  352 (380)
T 3iz6_a          293 RNDNELPIVTSVAFSISGR---LLFAGYSNGDCYVWDTLLAEMVLN-------LGTLQN----------SHEGRISCLGL  352 (380)
T ss_dssp             SSCCSSCSCSEEEECSSSS---EEEEECTTSCEEEEETTTCCEEEE-------ECCSCS----------SCCCCCCEEEE
T ss_pred             ccccccCceEEEEECCCCC---EEEEEECCCCEEEEECCCCceEEE-------EecccC----------CCCCceEEEEE
Confidence                 12388999999999   999999999999999876543221       000000          11111223334


Q ss_pred             CccccEEEEEEeCCcEEEEEEec
Q 019349          299 GVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       299 ~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      .+++..|++++.||.|++|++..
T Consensus       353 s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          353 SSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             CSSSSEEEEECTTSCEEEEECCS
T ss_pred             CCCCCEEEEeeCCCCEEEEecCC
Confidence            45558999999999999998753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=2e-35  Score=265.96  Aligned_cols=292  Identities=12%  Similarity=0.177  Sum_probs=212.6

Q ss_pred             CCCCC-CeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE-----EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            4 QSSSY-PVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE-----RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         4 ~~~~~-~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      +.|.. +|.+++|+|+|++||+|+.|+ ++|||+.+++....     .+...+..+.+.+++++++.++.       |++
T Consensus        12 ~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~-------D~~   84 (345)
T 3fm0_A           12 PAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASF-------DAT   84 (345)
T ss_dssp             CCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEET-------TSC
T ss_pred             cCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEEC-------CCc
Confidence            34555 899999999999999998887 69999988754321     24467888888888888887764       899


Q ss_pred             EEEEECCCCc--EEEEEe-cCCceEEEEEcCCeE--EEEE-CCeEEEEECCCCce---eeEEeCCCCCceEEEEeeCCCc
Q 019349           77 LCLFNTTTGT--ALRELN-FLTSILAVRLNKKRL--VIVL-REKTYIYDANTLAI---LDTIDTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        77 i~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~~~--~~~~-d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  147 (342)
                      +++||..++.  ++..+. +...|.+++|+++..  +.++ |++|++||+.++..   +..+..+  ...+.+++++|++
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~  162 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSH--TQDVKHVVWHPSQ  162 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCC--CSCEEEEEECSSS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCc--CCCeEEEEECCCC
Confidence            9999988764  445554 455899999998753  3344 88999999987643   3444433  3457778888888


Q ss_pred             cEEEEeCCCCccEEEEEEccCCc--eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC-------------
Q 019349          148 CFLAVPASTTKGSVLVYNVMELH--SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA-------------  212 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~-------------  212 (342)
                      .+|++++  .|+.|++||+.+++  +..++.+|..+|++++|+|+|++||+|+.||+ |++||....             
T Consensus       163 ~~l~s~s--~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~-v~iW~~~~~~~~~~~~~~~~~~  239 (345)
T 3fm0_A          163 ELLASAS--YDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT-VRIWRQYLPGNEQGVACSGSDP  239 (345)
T ss_dssp             SCEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEEEECTTCTTCCCCC---C
T ss_pred             CEEEEEe--CCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe-EEEeccccCCCCccceeeccCC
Confidence            8999888  68999999998875  45778899999999999999999999999998 589997322             


Q ss_pred             --eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccc
Q 019349          213 --TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH  290 (342)
Q Consensus       213 --~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (342)
                        +.+..+. +.+...|++++|+|++.   +|++++.|++|++|+++..........  ......          ...|.
T Consensus       240 ~~~~~~~~~-~~h~~~v~~v~~~~~~~---~l~s~~~d~~i~vw~~~~~~~~~~~~~--~~~~~~----------~~~h~  303 (345)
T 3fm0_A          240 SWKCICTLS-GFHSRTIYDIAWCQLTG---ALATACGDDAIRVFQEDPNSDPQQPTF--SLTAHL----------HQAHS  303 (345)
T ss_dssp             EEEEEEEEC-SSCSSCEEEEEECTTTC---CEEEEETTSCEEEEEECTTSCTTSCCE--EEEEEE----------TTSSS
T ss_pred             ccceeEEec-CCCCCcEEEEEEecCCC---EEEEEeCCCeEEEEEeCCCCCcceeeE--EEEeee----------ccccc
Confidence              2233332 22455699999999998   999999999999999876543221100  000000          01111


Q ss_pred             eeeeccCCCccc-cEEEEEEeCCcEEEEEEecCC
Q 019349          291 VLRNAFPAGVKR-ASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       291 ~~~~~~~~~~~~-~~l~~~~~dg~v~~~~~~~~~  323 (342)
                      ..+..+++.|++ ..|++++.||.|++|++...+
T Consensus       304 ~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          304 QDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             SCEEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             CcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            222333344443 479999999999999987644

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=4.3e-35  Score=263.51  Aligned_cols=292  Identities=13%  Similarity=0.147  Sum_probs=208.0

Q ss_pred             CCCCCCeEEEEE-----cC-CCCEEEEEcCCc-EEEEeCCCCc-------EE--EEEeeCCEEEEEEcCCCCeEEEEcCC
Q 019349            4 QSSSYPVFFVSF-----NQ-DNSGFALSTKDG-FKIFDSSTGR-------LC--YERAVGAFSIVEMLYSSSLLAIVGAG   67 (342)
Q Consensus         4 ~~~~~~V~~l~f-----s~-d~~~la~g~~~g-~~v~d~~~~~-------~~--~~~~~~~~~~~~~~~~~~~~~~~~~g   67 (342)
                      +.|..+|++++|     ++ |+++|++|+.|+ +++||+.+.+       ..  +..|...+..+.+.++..+++.++. 
T Consensus        18 ~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~-   96 (343)
T 2xzm_R           18 EGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSW-   96 (343)
T ss_dssp             ECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEEEEET-
T ss_pred             ccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEEEEcC-
Confidence            468899999999     76 999999998887 6999986532       22  2234466777888877777776654 


Q ss_pred             CCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEee
Q 019349           68 EQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSP  143 (342)
Q Consensus        68 ~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  143 (342)
                            |++|++||+++++.+..+. +...|.+++|+++.  ++.++ |++|++||+.............+...+.++.+
T Consensus        97 ------D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           97 ------DKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             ------TSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEE
T ss_pred             ------CCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeee
Confidence                  8999999999999988876 45689999999874  44444 88999999974332221111233445666777


Q ss_pred             CCCc----------cEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC-C
Q 019349          144 SLNA----------CFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE-A  212 (342)
Q Consensus       144 ~~~~----------~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~-~  212 (342)
                      +|++          .++++++  .||.|++|| .+.+....+.+|..+|++++|+|+|++||+|+.||+ |++||+.+ +
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~--~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~-v~iwd~~~~~  246 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVG--WDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKK-LLIWDILNLT  246 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEE--TTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCE-EEEEESSCCS
T ss_pred             ccccccccccCCCCCEEEEEc--CCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCe-EEEEECCCCc
Confidence            6654          6788887  689999999 456677788999999999999999999999999997 58999943 4


Q ss_pred             eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccccccccccccee
Q 019349          213 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVL  292 (342)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (342)
                      .....+..   ...|.+++|+|++.   +|+ ++.|+.|++||+.+.......        .+.+......-...++...
T Consensus       247 ~~~~~~~~---~~~v~~v~~sp~~~---~la-~~~d~~v~iw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~  311 (343)
T 2xzm_R          247 YPQREFDA---GSTINQIAFNPKLQ---WVA-VGTDQGVKIFNLMTQSKAPVC--------TIEAEPITKAEGQKGKNPQ  311 (343)
T ss_dssp             SCSEEEEC---SSCEEEEEECSSSC---EEE-EEESSCEEEEESSSCCSCSEE--------ECCCCSGGGBTTBCCSCCC
T ss_pred             ccceeecC---CCcEEEEEECCCCC---EEE-EECCCCEEEEEeCCCCCCceE--------EeecCcchhhhhhcCCCCc
Confidence            44444422   23599999999998   665 556888999999876542200        0000000000001112222


Q ss_pred             eeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          293 RNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       293 ~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      +..+++.++++.|++++.||.|++|++..
T Consensus       312 v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          312 CTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             EEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             eEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            33444555668999999999999999864

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=1e-34  Score=257.29  Aligned_cols=281  Identities=15%  Similarity=0.169  Sum_probs=217.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..|..+|++++|+|++++|++|+.++ +++|++.+++.....  +...+..+.+.++++.++.++.       |+.|++|
T Consensus        20 ~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-------d~~i~vw   92 (312)
T 4ery_A           20 AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASD-------DKTLKIW   92 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSEEEEE
T ss_pred             cccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECC-------CCEEEEE
Confidence            46788999999999999999998887 699999988766544  4456777888888888877764       8999999


Q ss_pred             ECCCCcEEEEEec-CCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           81 NTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        81 d~~~~~~~~~~~~-~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      |+.+++++..+.. ...|.++.++++.  ++.++ |+.|++||+++++.+..+..+..  .+.++++++++.++++++  
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~--  168 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD--PVSAVHFNRDGSLIVSSS--  168 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEEEEE--
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCC--cEEEEEEcCCCCEEEEEe--
Confidence            9999999888864 4589999998874  33334 88999999999998888866544  467777788888999888  


Q ss_pred             CccEEEEEEccCCceeEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe-c
Q 019349          157 TKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG-Q  234 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs-~  234 (342)
                      .||.|++||+++++.+..+. .|..++.+++|+|++++|++++.||. |++||+++++.+..+..+..........|+ +
T Consensus       169 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
T 4ery_A          169 YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNT-LKLWDYSKGKCLKTYTGHKNEKYCIFANFSVT  247 (312)
T ss_dssp             TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTE-EEEEETTTTEEEEEECSSCCSSSCCCEEEECS
T ss_pred             CCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCe-EEEEECCCCcEEEEEEecCCceEEEEEEEEeC
Confidence            68999999999998877664 56778999999999999999999997 589999999988888654322222223444 5


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE--eCC
Q 019349          235 SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT--YNG  312 (342)
Q Consensus       235 d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~dg  312 (342)
                      ++.   +|++++.||+|++||++..+....       +.++........|+              +..+.|++++  .||
T Consensus       248 ~~~---~l~sg~~dg~i~vwd~~~~~~~~~-------~~~h~~~v~~~~~~--------------p~~~~l~s~~~~~d~  303 (312)
T 4ery_A          248 GGK---WIVSGSEDNLVYIWNLQTKEIVQK-------LQGHTDVVISTACH--------------PTENIIASAALENDK  303 (312)
T ss_dssp             SSC---EEEECCTTSCEEEEETTTCCEEEE-------ECCCSSCEEEEEEC--------------SSSSEEEEEECTTTC
T ss_pred             CCc---EEEEECCCCEEEEEECCCchhhhh-------hhccCCcEEEEeec--------------CcCCceEEEEccCCc
Confidence            677   999999999999999987654321       11111111122344              4447888887  599


Q ss_pred             cEEEEEEe
Q 019349          313 YFVEYIFS  320 (342)
Q Consensus       313 ~v~~~~~~  320 (342)
                      .|++|+.+
T Consensus       304 ~i~~W~~d  311 (312)
T 4ery_A          304 TIKLWKSD  311 (312)
T ss_dssp             CEEEEECC
T ss_pred             cEEEecCC
Confidence            99999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.7e-35  Score=266.35  Aligned_cols=238  Identities=9%  Similarity=0.062  Sum_probs=188.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEE------EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY------ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      +.+|++++|+||+. |++|+.++ ++|||+++++.+.      ..|.+.+..+.+.++++.++..+.       |++|++
T Consensus        82 ~~~v~~~~~s~d~~-l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~-------d~~i~i  153 (344)
T 4gqb_B           82 EAGVADLTWVGERG-ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSK-------DICIKV  153 (344)
T ss_dssp             SSCEEEEEEETTTE-EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEET-------TSCEEE
T ss_pred             CCCEEEEEEeCCCe-EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeC-------CCeEEE
Confidence            46799999999965 66676666 6999998875322      124467888888888888877764       899999


Q ss_pred             EECCCCcEEEEEe-cCCceEEEEEcCCe--E-EEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC-ccEEEEe
Q 019349           80 FNTTTGTALRELN-FLTSILAVRLNKKR--L-VIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN-ACFLAVP  153 (342)
Q Consensus        80 wd~~~~~~~~~~~-~~~~v~~i~~~~~~--~-~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~  153 (342)
                      ||+.+++++..+. +...|.+++|+++.  + +.++ |++|++||+++++....+....+...+.+++++|+ +.+++++
T Consensus       154 wd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg  233 (344)
T 4gqb_B          154 WDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFG  233 (344)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEE
T ss_pred             EECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEe
Confidence            9999999998886 45689999998763  3 3444 88999999999988887765555455677777774 4567776


Q ss_pred             CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  232 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f  232 (342)
                      +  .||+|++||+++++++.++.+|..+|++|+|+|+| ++||+||.||+ |+|||+.+++.+. +..  |...|++|+|
T Consensus       234 ~--~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~-i~vwd~~~~~~~~-~~~--H~~~V~~v~~  307 (344)
T 4gqb_B          234 D--ENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCS-LAVLDSSLSELFR-SQA--HRDFVRDATW  307 (344)
T ss_dssp             E--TTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTCCEEEE-ECC--CSSCEEEEEE
T ss_pred             c--cCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCe-EEEEECCCCcEEE-EcC--CCCCEEEEEE
Confidence            6  68999999999999999999999999999999998 57999999998 5899999987653 432  4567999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          233 GQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       233 s~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      +|+++  .+|++++.|++|++|++....
T Consensus       308 sp~~~--~llas~s~D~~v~~w~v~~~~  333 (344)
T 4gqb_B          308 SPLNH--SLLTTVGWDHQVVHHVVPTEP  333 (344)
T ss_dssp             CSSST--TEEEEEETTSCEEEEECCC--
T ss_pred             eCCCC--eEEEEEcCCCeEEEEECCCCC
Confidence            99986  278899999999999998654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=5.4e-36  Score=271.06  Aligned_cols=281  Identities=10%  Similarity=0.128  Sum_probs=198.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC------Cc-EEEEeCCCCcE------EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTK------DG-FKIFDSSTGRL------CYERAVGAFSIVEMLYSSSLLAIVGAGEQPS   71 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~------~g-~~v~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~   71 (342)
                      .++..|++++|||||++||+|++      ++ +++|+..++..      ....+...+..+.+.++.. +++++      
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s------  112 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVAS------  112 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEE------
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEE------
Confidence            36778999999999999999987      44 58888766532      1223445677777776654 33443      


Q ss_pred             CCCCeEEEEECCCCcEEEE-----EecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEee
Q 019349           72 LSPRRLCLFNTTTGTALRE-----LNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSP  143 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~-----~~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  143 (342)
                       .|++|+|||+.+++....     ..+...|.+++|+++.  ++.++ |+.|++||+++++.+..+..+..  .+.++++
T Consensus       113 -~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~--~v~~v~~  189 (357)
T 4g56_B          113 -DSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSS--EVNCVAA  189 (357)
T ss_dssp             -TTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEE
T ss_pred             -CCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEE
Confidence             389999999988875432     2345689999999875  33344 88999999999999988876655  4555666


Q ss_pred             CCCcc-EEEEeCCCCccEEEEEEccCCceeEEEe--cccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349          144 SLNAC-FLAVPASTTKGSVLVYNVMELHSHCEID--AHQAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       144 ~~~~~-~l~~~~~~~~g~i~iwd~~~~~~~~~~~--~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~~~~~~~  219 (342)
                      ++++. ++++++  .||.|++||++++++...+.  .|...+++++|+|+ +.+||+|+.|++ |++||+++++.+..+.
T Consensus       190 s~~~~~~~~s~~--~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~-i~~wd~~~~~~~~~~~  266 (357)
T 4g56_B          190 CPGKDTIFLSCG--EDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGN-VSLVNIKNPDSAQTSA  266 (357)
T ss_dssp             CTTCSSCEEEEE--TTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSC-EEEEESSCGGGCEEEC
T ss_pred             ccCCCceeeeec--cCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccc-eeEEECCCCcEeEEEe
Confidence            55543 566666  58999999999988766543  57788999999997 578999999998 5899999999888885


Q ss_pred             cCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCC
Q 019349          220 RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAG  299 (342)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (342)
                      .+  ...|++++|+|++.  .+||+++.|++|+|||+++.+.....        ++........|+|.            
T Consensus       267 ~~--~~~v~~l~~sp~~~--~~lasgs~D~~i~iwd~~~~~~~~~~--------~H~~~V~~vafsP~------------  322 (357)
T 4g56_B          267 VH--SQNITGLAYSYHSS--PFLASISEDCTVAVLDADFSEVFRDL--------SHRDFVTGVAWSPL------------  322 (357)
T ss_dssp             CC--SSCEEEEEECSSSS--CCEEEEETTSCEEEECTTSCEEEEEC--------CCSSCEEEEEECSS------------
T ss_pred             cc--ceeEEEEEEcCCCC--CEEEEEeCCCEEEEEECCCCcEeEEC--------CCCCCEEEEEEeCC------------
Confidence            43  45699999999974  28999999999999999876532210        11111112234442            


Q ss_pred             ccccEEEEEEeCCcEEEEEEecCC
Q 019349          300 VKRASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       300 ~~~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                       ++..|++++.||.|++|++..+.
T Consensus       323 -d~~~l~s~s~Dg~v~iW~~~~~~  345 (357)
T 4g56_B          323 -DHSKFTTVGWDHKVLHHHLPSEG  345 (357)
T ss_dssp             -STTEEEEEETTSCEEEEECC---
T ss_pred             -CCCEEEEEcCCCeEEEEECCCCC
Confidence             34789999999999999986543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.2e-34  Score=280.20  Aligned_cols=245  Identities=18%  Similarity=0.235  Sum_probs=196.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc--EE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      +.|...|++++|+|||++||+|+.|+ ++|||+.+++  +.  +..+.+.+..+.+.++++.++.++.+..   ..++|+
T Consensus        56 ~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~---~~~~v~  132 (611)
T 1nr0_A           56 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRE---RFGHVF  132 (611)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSS---CSEEEE
T ss_pred             cCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCC---ceeEEE
Confidence            46788999999999999999999887 6999987543  22  3334577888899999888888775310   124788


Q ss_pred             EEECCCCcEEEEEe-cCCceEEEEEcCCe---EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           79 LFNTTTGTALRELN-FLTSILAVRLNKKR---LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        79 iwd~~~~~~~~~~~-~~~~v~~i~~~~~~---~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      +||.  ++.+..+. +...|.+++|+|+.   ++.++ |++|++||..+++.+..+..|..  .+.+++++|++.+||++
T Consensus       133 ~wd~--~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~--~V~~v~fspdg~~las~  208 (611)
T 1nr0_A          133 LFDT--GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK--FVHSVRYNPDGSLFAST  208 (611)
T ss_dssp             ETTT--CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred             EeeC--CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccC--ceEEEEECCCCCEEEEE
Confidence            8874  44444444 34589999999874   44444 88999999998888888765544  57788888899999998


Q ss_pred             CCCCccEEEEEEccCCceeEEEe-------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC-----
Q 019349          154 ASTTKGSVLVYNVMELHSHCEID-------AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-----  221 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~-------~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~-----  221 (342)
                      +  .||+|++||+.+++++..+.       +|..+|.+++|+|||++|+|++.|++ ||+||+.+++.+.++..+     
T Consensus       209 s--~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~-v~lWd~~~~~~~~~~~~~~~~~~  285 (611)
T 1nr0_A          209 G--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIED  285 (611)
T ss_dssp             E--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGGG
T ss_pred             E--CCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCe-EEEEeCCCCceeeeecCCCCccc
Confidence            8  68999999999999888874       79999999999999999999999997 599999998876654311     


Q ss_pred             ------------------------------------cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          222 ------------------------------------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       222 ------------------------------------~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                                                          .+...|.+++|+||++   +|++++.|++|++||+.++..
T Consensus       286 ~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~---~l~s~s~D~~v~~Wd~~~~~~  358 (611)
T 1nr0_A          286 QQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGK---TLFSADAEGHINSWDISTGIS  358 (611)
T ss_dssp             CEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS---EEEEEETTSCEEEEETTTCCE
T ss_pred             eeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC---EEEEEeCCCcEEEEECCCCce
Confidence                                                2344699999999999   999999999999999987643

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=2.3e-34  Score=256.66  Aligned_cols=237  Identities=14%  Similarity=0.190  Sum_probs=202.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..+...|.+++|++++.++++|+.|+ +++||+.+++.+.....  ..+..+.+.++++.++..+.       +++|++|
T Consensus        77 ~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~-------dg~v~i~  149 (321)
T 3ow8_A           77 EGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTH-------VGKVNIF  149 (321)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCCCCEEECTTSSEEEEECT-------TSEEEEE
T ss_pred             ccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCccEEEEEECCCCCEEEEEcC-------CCcEEEE
Confidence            46788999999999999999998887 69999999987765544  34455777777888776654       8999999


Q ss_pred             ECCCCcEEEEEecC-CceEEEEEcCCeEEE--EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           81 NTTTGTALRELNFL-TSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        81 d~~~~~~~~~~~~~-~~v~~i~~~~~~~~~--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      |+.+++....+... ..|.+++++++...+  ++ |+.|++||+.+++.+..+..+..  .+.+++++|++.+|++++  
T Consensus       150 ~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~--~v~~l~~spd~~~l~s~s--  225 (321)
T 3ow8_A          150 GVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAM--PIRSLTFSPDSQLLVTAS--  225 (321)
T ss_dssp             ETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CCCEEEECTTSCEEEEEC--
T ss_pred             EcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCC--ceeEEEEcCCCCEEEEEc--
Confidence            99999988877654 479999999875433  33 88999999999999988876554  456677778888999988  


Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  236 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (342)
                      .||.|++||+++++....+.+|...|.+++|+|+|++|++|+.||+ |++||+.+++++.++..+  ...|.+++|+|++
T Consensus       226 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~-v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g  302 (321)
T 3ow8_A          226 DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKS-VKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNG  302 (321)
T ss_dssp             TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCC--SSCEEEEEECTTS
T ss_pred             CCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCc-EEEEeCCCCEEEEEEcCC--CCcEEEEEECCCC
Confidence            6899999999999999999999999999999999999999999998 589999999999988643  5579999999999


Q ss_pred             CcccEEEEEeCCCcEEEEecC
Q 019349          237 QFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       237 ~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +   +|++++.||+|+|||+.
T Consensus       303 ~---~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          303 S---KIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             S---EEEEEETTCCEEEEECC
T ss_pred             C---EEEEEeCCCeEEEEeCC
Confidence            9   99999999999999963

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.6e-34  Score=256.28  Aligned_cols=283  Identities=13%  Similarity=0.125  Sum_probs=225.7

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      ...|..+|++++|+|++++|++|+.++ +++||+.+++.+...  +...+..+.+.++++.+++++.       |++|++
T Consensus        28 l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-------dg~i~i  100 (369)
T 3zwl_B           28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA-------DYSIKL  100 (369)
T ss_dssp             EECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-------TTEEEE
T ss_pred             EEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeC-------CCeEEE
Confidence            356889999999999999999998877 799999998876655  3466777888887888877764       899999


Q ss_pred             EECCCCcEEEEEecCCceEEEEEcCCeEEE--EE-C-----CeEEEEECCCCc-----------eeeEEeCCCCCceEEE
Q 019349           80 FNTTTGTALRELNFLTSILAVRLNKKRLVI--VL-R-----EKTYIYDANTLA-----------ILDTIDTVPNLKGLCA  140 (342)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~~~~--~~-d-----~~i~i~d~~~~~-----------~~~~~~~~~~~~~~~~  140 (342)
                      ||+.+++.+..+.+...+.++.|+++...+  +. +     +.|++||+....           .+..+..+.....+.+
T Consensus       101 wd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (369)
T 3zwl_B          101 WDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATV  180 (369)
T ss_dssp             EETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEE
T ss_pred             EECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeE
Confidence            999999999999988899999998875333  33 5     799999997653           2333334444346788


Q ss_pred             EeeCCCccEEEEeCCCCccEEEEEEccC-CceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349          141 FSPSLNACFLAVPASTTKGSVLVYNVME-LHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~-~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~  219 (342)
                      +++++++.++++++  .+|.|++||+.+ .+.+..+..|..+|.+++|+|++++|++++.||. |++||+++++.+..+.
T Consensus       181 ~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~  257 (369)
T 3zwl_B          181 AGWSTKGKYIIAGH--KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTN-SFLVDVSTLQVLKKYE  257 (369)
T ss_dssp             EEECGGGCEEEEEE--TTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE
T ss_pred             EEEcCCCCEEEEEc--CCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCce-EEEEECCCCceeeeec
Confidence            88888898999887  689999999998 7888899999999999999999999999999997 5899999999888875


Q ss_pred             cCcCceeEEEEEEecCCCcccEEEEEeCCC--------------cEEEEecCCCCCCCCCCCcccccccccccccccccc
Q 019349          220 RGTYPSTIFSLSFGQSMQFQDILVATSSSG--------------SLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLD  285 (342)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg--------------~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (342)
                         ....+.+++|+|+++   ++++++.++              .+++||+...+....       +..+........|+
T Consensus       258 ---~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~-------~~~~~~~v~~~~~s  324 (369)
T 3zwl_B          258 ---TDCPLNTAVITPLKE---FIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR-------VQGHFGPLNTVAIS  324 (369)
T ss_dssp             ---CSSCEEEEEECSSSS---EEEEEECCC-------------CEEEEEETTTCCEEEE-------EECCSSCEEEEEEC
T ss_pred             ---CCCCceeEEecCCCc---eEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh-------eecccCcEEEEEEC
Confidence               345699999999999   999999998              899999876654221       11111111122344


Q ss_pred             ccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          286 PADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                                    ++++.|++++.||.|++|+++..
T Consensus       325 --------------~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          325 --------------PQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             --------------TTSSEEEEEETTSEEEEEEECHH
T ss_pred             --------------CCCCEEEEEcCCCeEEEEECccc
Confidence                          44489999999999999998753

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=2e-34  Score=257.40  Aligned_cols=290  Identities=12%  Similarity=0.094  Sum_probs=213.7

Q ss_pred             CCCCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEeCCCCcE-----E--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCC
Q 019349            3 NQSSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSSTGRL-----C--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d-~~~la~g~~~g-~~v~d~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (342)
                      ...|.+.|++|+|+|+ +++|++|+.|+ ++|||+.+.+.     .  +..+...+..+.+.+++++++..+.       
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~-------  106 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW-------  106 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET-------
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc-------
Confidence            4579999999999998 57999998887 79999876531     1  2234567888888888888877664       


Q ss_pred             CCeEEEEECCCCcEEEEEecC-CceEEEEEcCC--eEEEEE-CCeEEEEECCCCceeeE-EeCCCCCceEEEEeeCCCcc
Q 019349           74 PRRLCLFNTTTGTALRELNFL-TSILAVRLNKK--RLVIVL-REKTYIYDANTLAILDT-IDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~-~~v~~i~~~~~--~~~~~~-d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  148 (342)
                      |+.|++|+...+......... ..+..+.+.++  .++.++ |+.+++||+........ ...+.......++++.+...
T Consensus       107 d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  186 (340)
T 4aow_A          107 DGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNP  186 (340)
T ss_dssp             TSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSC
T ss_pred             cccceEEeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCc
Confidence            899999999988877766544 46666777654  344444 88999999977644322 22333444455566666666


Q ss_pred             EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEE
Q 019349          149 FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  228 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~  228 (342)
                      ++++++  .|+.|++||+++++.+..+.+|..+|++|+|+|+|++|++|+.||+ |++||+++++.+..+..   ...+.
T Consensus       187 ~~~s~~--~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~-i~iwd~~~~~~~~~~~~---~~~v~  260 (340)
T 4aow_A          187 IIVSCG--WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQ-AMLWDLNEGKHLYTLDG---GDIIN  260 (340)
T ss_dssp             EEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCE-EEEEETTTTEEEEEEEC---SSCEE
T ss_pred             EEEEEc--CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCe-EEEEEeccCceeeeecC---CceEE
Confidence            777777  5899999999999999999999999999999999999999999998 58999999999888753   34599


Q ss_pred             EEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEE
Q 019349          229 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVI  308 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (342)
                      +++|+|++.    +++++.|++|++||++.............            ......+...+..+.+.+++++|+++
T Consensus       261 ~~~~~~~~~----~~~~~~d~~i~iwd~~~~~~~~~~~~~~~------------~~~~~~h~~~v~~l~~s~dg~~l~sg  324 (340)
T 4aow_A          261 ALCFSPNRY----WLCAATGPSIKIWDLEGKIIVDELKQEVI------------STSSKAEPPQCTSLAWSADGQTLFAG  324 (340)
T ss_dssp             EEEECSSSS----EEEEEETTEEEEEETTTTEEEEEECCC-------------------CCCCCEEEEEECTTSSEEEEE
T ss_pred             eeecCCCCc----eeeccCCCEEEEEECCCCeEEEeccccce------------eeeccCCCCCEEEEEECCCCCEEEEE
Confidence            999999986    66777899999999986543221000000            00001112223334445566899999


Q ss_pred             EeCCcEEEEEEec
Q 019349          309 TYNGYFVEYIFSI  321 (342)
Q Consensus       309 ~~dg~v~~~~~~~  321 (342)
                      +.||.|++|++..
T Consensus       325 s~Dg~v~iW~~~t  337 (340)
T 4aow_A          325 YTDNLVRVWQVTI  337 (340)
T ss_dssp             ETTSCEEEEEEEC
T ss_pred             eCCCEEEEEeCCC
Confidence            9999999999875

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=1.2e-34  Score=262.26  Aligned_cols=241  Identities=9%  Similarity=0.061  Sum_probs=189.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEE----EE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLC----YE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      .+...|++++|+|++.+|+++.++.++|||+.+++..    +.  .+...+..+.+.++++.++.++.       |++|+
T Consensus        92 ~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~-------dg~v~  164 (357)
T 4g56_B           92 QTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGK-------DFSVK  164 (357)
T ss_dssp             ECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEET-------TSCEE
T ss_pred             CCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeC-------CCeEE
Confidence            3567899999999998777766666899999887532    12  23467888888888888877664       89999


Q ss_pred             EEECCCCcEEEEEec-CCceEEEEEcCCe---EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc-cEEEE
Q 019349           79 LFNTTTGTALRELNF-LTSILAVRLNKKR---LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA-CFLAV  152 (342)
Q Consensus        79 iwd~~~~~~~~~~~~-~~~v~~i~~~~~~---~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~  152 (342)
                      +||+.+++++..+.. ...|.+++|+++.   ++.+. |++|++||+++++....+....+...+.+++++|++ .++++
T Consensus       165 iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~  244 (357)
T 4g56_B          165 VWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFAC  244 (357)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEE
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEE
Confidence            999999999988864 4589999997653   34444 889999999998877776655555667788888764 56777


Q ss_pred             eCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCC-CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEE
Q 019349          153 PASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG-MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  231 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~  231 (342)
                      ++  .|+.|++||+++++++..+.+|..+|++++|+|++ ++||+||.||+ |+|||+++++.+..+   .+...|++|+
T Consensus       245 g~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~-i~iwd~~~~~~~~~~---~H~~~V~~va  318 (357)
T 4g56_B          245 GD--ETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCT-VAVLDADFSEVFRDL---SHRDFVTGVA  318 (357)
T ss_dssp             EE--SSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSC-EEEECTTSCEEEEEC---CCSSCEEEEE
T ss_pred             ee--cccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCE-EEEEECCCCcEeEEC---CCCCCEEEEE
Confidence            66  68999999999999999999999999999999987 67999999998 589999999887655   2456799999


Q ss_pred             Eec-CCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          232 FGQ-SMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       232 fs~-d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      |+| |+.   +|++++.||+|++|++....+
T Consensus       319 fsP~d~~---~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          319 WSPLDHS---KFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             ECSSSTT---EEEEEETTSCEEEEECC----
T ss_pred             EeCCCCC---EEEEEcCCCeEEEEECCCCCc
Confidence            998 787   999999999999999976543

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=3.2e-34  Score=277.27  Aligned_cols=299  Identities=10%  Similarity=0.124  Sum_probs=224.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      ..+.+.+++|+|||++|++++++.+++|++.+++..  +..|...+..+.+.+++++++..+.       |++|+|||+.
T Consensus        17 ~~g~~~~~~~spdg~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~spdg~~lasg~~-------d~~v~lWd~~   89 (611)
T 1nr0_A           17 ARGTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV-------HGNVRIWDTT   89 (611)
T ss_dssp             CTTCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEET-------TSEEEEEESS
T ss_pred             ccCceeEEeeCCCCCEEEeCCCCEEEEecCCCcccCeEecCCCCceEEEEECCCCcEEEEEeC-------CCCEEEeECC
Confidence            456788999999999999999888899999877544  4445677888899888888887765       8999999997


Q ss_pred             CCcE--EEEEe-cCCceEEEEEcCCeEEEE--EC-----CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc-EEEE
Q 019349           84 TGTA--LRELN-FLTSILAVRLNKKRLVIV--LR-----EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC-FLAV  152 (342)
Q Consensus        84 ~~~~--~~~~~-~~~~v~~i~~~~~~~~~~--~d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~  152 (342)
                      +++.  ...+. +...|.+++|+++...++  ++     +.|++||.  ++....+..|.  ..+.+++++|++. .|++
T Consensus        90 ~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~~~~~~l~gh~--~~v~~v~f~p~~~~~l~s  165 (611)
T 1nr0_A           90 QTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--GTSNGNLTGQA--RAMNSVDFKPSRPFRIIS  165 (611)
T ss_dssp             STTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--CCBCBCCCCCS--SCEEEEEECSSSSCEEEE
T ss_pred             CCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--CCCcceecCCC--CCceEEEECCCCCeEEEE
Confidence            6543  33443 456999999999864443  32     26777774  45555555443  4577777788775 5777


Q ss_pred             eCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC-----cCceeE
Q 019349          153 PASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-----TYPSTI  227 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~-----~~~~~v  227 (342)
                      ++  .|++|++||..+++...++.+|...|++++|+|||++||+|+.|++ |++||+.+++.+..+...     .+...|
T Consensus       166 ~s--~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~-i~lwd~~~g~~~~~~~~~~~~~~~h~~~V  242 (611)
T 1nr0_A          166 GS--DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSV  242 (611)
T ss_dssp             EE--TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCE
T ss_pred             Ee--CCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCc-EEEEECCCCcEeeeeccccccccccCCCE
Confidence            77  6899999999999999999999999999999999999999999998 589999999988877421     245679


Q ss_pred             EEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccc-------------ccccccccccccccccc-------
Q 019349          228 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSS-------------ILGSILPESVNEVLDPA-------  287 (342)
Q Consensus       228 ~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~-------  287 (342)
                      .+++|+||++   +|++++.|++|++||+++.+..........             .+.....+....+|++.       
T Consensus       243 ~~v~~spdg~---~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~  319 (611)
T 1nr0_A          243 FGLTWSPDGT---KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQV  319 (611)
T ss_dssp             EEEEECTTSS---EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEE
T ss_pred             EEEEECCCCC---EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeCCCcEEEEeCCCCCcceE
Confidence            9999999999   999999999999999987654322110000             00000111122344433       


Q ss_pred             --ccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          288 --DHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       288 --~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                        +|...+..+++.+++++|++++.||.|++|++..
T Consensus       320 ~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~  355 (611)
T 1nr0_A          320 RYGHNKAITALSSSADGKTLFSADAEGHINSWDIST  355 (611)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             EcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCC
Confidence              2333455677788889999999999999998753

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=3.2e-34  Score=264.22  Aligned_cols=237  Identities=14%  Similarity=0.156  Sum_probs=199.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..+...|.+++|+|++++|++|+.|+ +++||+.+++.+...  +.+.+..+.+.++++.++.++.       |++|++|
T Consensus       147 ~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~-------D~~i~~w  219 (410)
T 1vyh_C          147 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR-------DKTIKMW  219 (410)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET-------TSEEEEE
T ss_pred             eccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEEEEEEeCCCCEEEEEeC-------CCeEEEE
Confidence            35778999999999999999999887 699999988776544  4467888888888888776664       8999999


Q ss_pred             ECCCCcEEEEEec-CCceEEEEEcCCeEE--EEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC----------
Q 019349           81 NTTTGTALRELNF-LTSILAVRLNKKRLV--IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN----------  146 (342)
Q Consensus        81 d~~~~~~~~~~~~-~~~v~~i~~~~~~~~--~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  146 (342)
                      |+++++++..+.. ...|.++.++++...  .++ |+.|++||+.+++....+..+...  +.+++++|+          
T Consensus       220 d~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~~~~~~~  297 (410)
T 1vyh_C          220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV--VECISWAPESSYSSISEAT  297 (410)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECCSCGGGGGGGCC
T ss_pred             ECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCce--EEEEEEcCcccccchhhhc
Confidence            9999999988764 457999999887533  334 889999999999888888766554  555555553          


Q ss_pred             ----------ccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE
Q 019349          147 ----------ACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY  216 (342)
Q Consensus       147 ----------~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~  216 (342)
                                +.++++++  .||+|++||+++++++..+.+|...|++++|+|+|++|++|+.||+ |++||+.+++.+.
T Consensus       298 ~~~~~~~~~~g~~l~sgs--~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-i~vwd~~~~~~~~  374 (410)
T 1vyh_C          298 GSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMK  374 (410)
T ss_dssp             SCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCE
T ss_pred             cccccccCCCCCEEEEEe--CCCeEEEEECCCCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCceEE
Confidence                      55788877  6899999999999999999999999999999999999999999997 5999999999888


Q ss_pred             EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          217 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      .+..+  ...|.+++|+|++.   +|++|+.||+|+||+++
T Consensus       375 ~~~~h--~~~v~~l~~~~~~~---~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          375 TLNAH--EHFVTSLDFHKTAP---YVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             EEECC--SSCEEEEEECSSSS---CEEEEETTSEEEEEC--
T ss_pred             EEcCC--CCcEEEEEEcCCCC---EEEEEeCCCcEEEEeCC
Confidence            88643  55699999999999   99999999999999863

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-33  Score=251.01  Aligned_cols=283  Identities=10%  Similarity=0.082  Sum_probs=199.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC--cEEEEE----eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYER----AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~--~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      ..+..+|.+++|+|+  +|++|+.|+ +++||+..+  +.....    |...+..+.+.++++.++.++.       |++
T Consensus        11 ~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~-------D~~   81 (330)
T 2hes_X           11 KLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF-------DST   81 (330)
T ss_dssp             ECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEET-------TSC
T ss_pred             ccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeC-------CCc
Confidence            467889999999998  889888877 699999875  333332    4456888888888888877764       899


Q ss_pred             EEEEECCC-------CcEEEEEe-cCCceEEEEEcCCeEEE--EE-CCeEEEEECCCC----ceeeEEeCCCCCceEEEE
Q 019349           77 LCLFNTTT-------GTALRELN-FLTSILAVRLNKKRLVI--VL-REKTYIYDANTL----AILDTIDTVPNLKGLCAF  141 (342)
Q Consensus        77 i~iwd~~~-------~~~~~~~~-~~~~v~~i~~~~~~~~~--~~-d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~  141 (342)
                      |++||...       .+.+..+. +...|.+++|+|+...+  ++ |++|++||+...    +.+..+..|.  ..+.++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~--~~v~~v  159 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHS--QDVKHV  159 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCS--SCEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCC--CceEEE
Confidence            99999853       23444444 45689999999875433  34 889999999432    3455555443  457788


Q ss_pred             eeCCCccEEEEeCCCCccEEEEEEccCC--ceeEEEecccCCeeEEEECCC--CCEEEEEeCCCcEEEEEEcCCC-----
Q 019349          142 SPSLNACFLAVPASTTKGSVLVYNVMEL--HSHCEIDAHQAPLAAIVLSSN--GMYIATASEQGTIIRVFLVSEA-----  212 (342)
Q Consensus       142 ~~~~~~~~l~~~~~~~~g~i~iwd~~~~--~~~~~~~~h~~~v~~i~~s~d--g~~lat~s~dg~~irlwd~~~~-----  212 (342)
                      +++|++.+|++++  .|++|++||..++  +++..+.+|..+|.+++|+|+  +.+|++|+.|++ ||+||+.++     
T Consensus       160 ~~~p~~~~l~s~s--~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~-v~iw~~~~~~~~~~  236 (330)
T 2hes_X          160 IWHPSEALLASSS--YDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDST-VRVWKYMGDDEDDQ  236 (330)
T ss_dssp             EECSSSSEEEEEE--TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSC-EEEEEEEEECTTSC
T ss_pred             EECCCCCEEEEEc--CCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCe-EEEEEecCCCcccc
Confidence            8888889999988  6899999999876  578889999999999999998  779999999998 589999764     


Q ss_pred             ---eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccc-ccccccccccc
Q 019349          213 ---TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILP-ESVNEVLDPAD  288 (342)
Q Consensus       213 ---~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  288 (342)
                         .....+. +.+...|.+++|++++    +|++++.||+|+|||+..+.....    ......+.. ......|+|. 
T Consensus       237 ~~~~~~~~~~-~~h~~~v~~v~~s~~~----~l~s~~~dg~v~iw~~~~~~~~~~----~~~~~~h~~~~v~~v~~~~~-  306 (330)
T 2hes_X          237 QEWVCEAILP-DVHKRQVYNVAWGFNG----LIASVGADGVLAVYEEVDGEWKVF----AKRALCHGVYEINVVKWLEL-  306 (330)
T ss_dssp             EEEEEEEECC-SCCSSCEEEEEECTTS----CEEEEETTSCEEEEEEETTEEEEE----EEESCTTTTSCEEEEEEC---
T ss_pred             ceeEEeeecc-cccccceEEEEEcCCC----EEEEEeCCCEEEEEEcCCCceEEE----eccccccccceEEEEEEecC-
Confidence               2333333 2245679999999765    699999999999999864421000    000000100 0011223331 


Q ss_pred             cceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          289 HHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                                 .++..|++++.||.|++|++..
T Consensus       307 -----------~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          307 -----------NGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             --------------CCEEEEETTSEEEEEEC--
T ss_pred             -----------CCceEEEEecCCCcEEEEEecc
Confidence                       0236899999999999998653

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.9e-33  Score=255.16  Aligned_cols=198  Identities=10%  Similarity=0.122  Sum_probs=163.6

Q ss_pred             EEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEE--ECCeEEEEECCCCceee
Q 019349           50 SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIV--LREKTYIYDANTLAILD  127 (342)
Q Consensus        50 ~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~--~d~~i~i~d~~~~~~~~  127 (342)
                      ..+++.++++++++++++     .|++|+|||+++++++..+.+...|.+++|+|+...++  +++.+.+|+..+++.+.
T Consensus       137 ~~v~fSpDg~~la~as~~-----~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~  211 (365)
T 4h5i_A          137 KLVYISREGTVAAIASSK-----VPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIA  211 (365)
T ss_dssp             EEEEECTTSSCEEEEESC-----SSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEE
T ss_pred             EEEEEcCCCCEEEEEECC-----CCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEeccceeEEEEEeccCccee
Confidence            346666777788877763     58999999999999999999888999999999864444  38889999998887766


Q ss_pred             EEeCCCCCceEEEEeeCCCccEEEEeCCCCcc----EEEEEEccCCce----eEEEecccCCeeEEEECCCCCEEEEEeC
Q 019349          128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTKG----SVLVYNVMELHS----HCEIDAHQAPLAAIVLSSNGMYIATASE  199 (342)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g----~i~iwd~~~~~~----~~~~~~h~~~v~~i~~s~dg~~lat~s~  199 (342)
                      ......+...+.+++++|++..+++++.  ++    .+++||+.....    ...+.+|..+|++++|||||++||+|+.
T Consensus       212 ~~~~~~~~~~v~~v~fspdg~~l~~~s~--d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~  289 (365)
T 4h5i_A          212 RKTDFDKNWSLSKINFIADDTVLIAASL--KKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASN  289 (365)
T ss_dssp             EECCCCTTEEEEEEEEEETTEEEEEEEE--SSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEET
T ss_pred             eeecCCCCCCEEEEEEcCCCCEEEEEec--CCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcC
Confidence            5544455566778888888888888763  33    788899877653    3567789999999999999999999999


Q ss_pred             CCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          200 QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       200 dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      |++ |+|||+++++.+..+..+ |...|++|+||||++   +||++|.|++|+|||+...
T Consensus       290 D~~-V~iwd~~~~~~~~~~~~g-H~~~V~~v~fSpdg~---~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          290 DNS-IALVKLKDLSMSKIFKQA-HSFAITEVTISPDST---YVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             TSC-EEEEETTTTEEEEEETTS-SSSCEEEEEECTTSC---EEEEEETTSEEEEEECCTT
T ss_pred             CCE-EEEEECCCCcEEEEecCc-ccCCEEEEEECCCCC---EEEEEeCCCeEEEEEcCCC
Confidence            998 589999999999887544 456799999999999   9999999999999999654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.6e-33  Score=257.14  Aligned_cols=302  Identities=17%  Similarity=0.172  Sum_probs=217.3

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc------EEEEE--eeCCEEEEEEcCC----C---CeEEEEcC
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR------LCYER--AVGAFSIVEMLYS----S---SLLAIVGA   66 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~------~~~~~--~~~~~~~~~~~~~----~---~~~~~~~~   66 (342)
                      ...|..+|++++|+|  ++|++|+.++ +++||+.+++      .....  +...+..+.+.++    +   +.++.++.
T Consensus        12 ~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~   89 (397)
T 1sq9_A           12 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   89 (397)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             hhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcC
Confidence            357889999999999  7888888877 6999998876      44333  4466777777776    5   66665553


Q ss_pred             CCCCCCCCCeEEEEECCCCcE-----EEEEecC------CceEEEEEc----CCe---EEEEE-CCeEEEEECCC-----
Q 019349           67 GEQPSLSPRRLCLFNTTTGTA-----LRELNFL------TSILAVRLN----KKR---LVIVL-REKTYIYDANT-----  122 (342)
Q Consensus        67 g~~~~~~d~~i~iwd~~~~~~-----~~~~~~~------~~v~~i~~~----~~~---~~~~~-d~~i~i~d~~~-----  122 (342)
                             |+.|++||+.+++.     +..+...      ..|.+++|+    ++.   ++++. |+.|++||+.+     
T Consensus        90 -------dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  162 (397)
T 1sq9_A           90 -------SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES  162 (397)
T ss_dssp             -------TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred             -------CCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccccc
Confidence                   89999999998886     6666544      789999999    654   33344 78999999988     


Q ss_pred             -Cceee-----EEeC-----CCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec---c---cCCeeEE
Q 019349          123 -LAILD-----TIDT-----VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA---H---QAPLAAI  185 (342)
Q Consensus       123 -~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~---h---~~~v~~i  185 (342)
                       ++.+.     .+..     ..+...+.+++++|++ .+++++  .+|.|++||+++++.+..+..   |   ..+|.++
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i  239 (397)
T 1sq9_A          163 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSV  239 (397)
T ss_dssp             HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEE
T ss_pred             ccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe--CCCcEEEEECCCCceeEEEeccccccccCCccceE
Confidence             66665     6643     3344557778888888 888877  689999999999999999998   9   9999999


Q ss_pred             EECCCCCEEEEEeCC---CcEEEEEEcCCCeeEEEeccCc-----------CceeEEEEEEecCCCcccEEEEEeCCCcE
Q 019349          186 VLSSNGMYIATASEQ---GTIIRVFLVSEATKSYSFRRGT-----------YPSTIFSLSFGQSMQFQDILVATSSSGSL  251 (342)
Q Consensus       186 ~~s~dg~~lat~s~d---g~~irlwd~~~~~~~~~~~~~~-----------~~~~v~~l~fs~d~~~~~~l~~~s~dg~i  251 (342)
                      +|+|++++|++++.|   |. |++||+++++.+..+....           +...|.+++|+|+++   +|++++.||+|
T Consensus       240 ~~~~~~~~l~~~~~d~~~g~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i  315 (397)
T 1sq9_A          240 KFSPQGSLLAIAHDSNSFGC-ITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE---TLCSAGWDGKL  315 (397)
T ss_dssp             EECSSTTEEEEEEEETTEEE-EEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS---EEEEEETTSEE
T ss_pred             EECCCCCEEEEEecCCCCce-EEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCC---EEEEEeCCCeE
Confidence            999999999999999   87 5899999999988886410           355699999999999   99999999999


Q ss_pred             EEEecCCCCCCCCCCCcccccccccccc-ccccccccccceeeeccCCCccc----------cEEEEEEeCCcEEEEEEe
Q 019349          252 HVFSPGFAINQRRGGRTSSILGSILPES-VNEVLDPADHHVLRNAFPAGVKR----------ASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       252 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~l~~~~~dg~v~~~~~~  320 (342)
                      +|||++..+..........-. .+..+. .........|...+..+.+.+++          +.|++++.||.|++|++.
T Consensus       316 ~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~  394 (397)
T 1sq9_A          316 RFWDVKTKERITTLNMHCDDI-EIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREA  394 (397)
T ss_dssp             EEEETTTTEEEEEEECCGGGC-SSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEE
T ss_pred             EEEEcCCCceeEEEecccCcc-cchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcC
Confidence            999998765433211000000 000000 00000000001122233333433          689999999999999987


Q ss_pred             c
Q 019349          321 I  321 (342)
Q Consensus       321 ~  321 (342)
                      .
T Consensus       395 ~  395 (397)
T 1sq9_A          395 G  395 (397)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=3.7e-32  Score=241.97  Aligned_cols=275  Identities=13%  Similarity=0.137  Sum_probs=212.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcE---E--EE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRL---C--YE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~---~--~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      .+..+|.+++|+|++++|+++++..+++||+.+++.   .  ..  .+...+..+.+.++++.+++.+.       ++.|
T Consensus        49 ~h~~~v~~~~~~~~~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i  121 (337)
T 1gxr_A           49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE-------ASTL  121 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES-------SSEE
T ss_pred             cCCCceEEEEEecCCcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC-------CCcE
Confidence            578899999999999999999954579999987632   1  22  23466777888888888877664       8999


Q ss_pred             EEEECCCCc--EEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           78 CLFNTTTGT--ALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        78 ~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      ++||+.+++  ....+. +...|.+++++++.  ++++. ++.|++||+++++.+..+..+..  .+.+++++|++..++
T Consensus       122 ~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~--~i~~~~~~~~~~~l~  199 (337)
T 1gxr_A          122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEE
T ss_pred             EEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccC--ceEEEEECCCCCEEE
Confidence            999999887  344443 34579999998764  44444 78999999999988888865443  577788888888999


Q ss_pred             EeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEE
Q 019349          152 VPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  231 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~  231 (342)
                      +++  .+|.|++||+++++.+..+. |..++.+++|+|++++|++++.||. |++||+.+++.. .+.  .+...|.+++
T Consensus       200 ~~~--~dg~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~-i~~~~~~~~~~~-~~~--~~~~~v~~~~  272 (337)
T 1gxr_A          200 TGG--LDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKY-QLH--LHESCVLSLK  272 (337)
T ss_dssp             EEE--TTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEE-EEC--CCSSCEEEEE
T ss_pred             EEe--cCCcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCc-EEEEECCCCCeE-EEc--CCccceeEEE
Confidence            887  68999999999998877764 7889999999999999999999998 589999988764 343  2356799999


Q ss_pred             EecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeC
Q 019349          232 FGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN  311 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  311 (342)
                      |+|+++   +|++++.||.|++||++..+....        ...........|++              +++.|++++.|
T Consensus       273 ~~~~~~---~l~~~~~dg~i~~~~~~~~~~~~~--------~~~~~~v~~~~~s~--------------~~~~l~~~~~d  327 (337)
T 1gxr_A          273 FAYCGK---WFVSTGKDNLLNAWRTPYGASIFQ--------SKESSSVLSCDISV--------------DDKYIVTGSGD  327 (337)
T ss_dssp             ECTTSS---EEEEEETTSEEEEEETTTCCEEEE--------EECSSCEEEEEECT--------------TSCEEEEEETT
T ss_pred             ECCCCC---EEEEecCCCcEEEEECCCCeEEEE--------ecCCCcEEEEEECC--------------CCCEEEEecCC
Confidence            999999   999999999999999987654211        00111111223444              44899999999


Q ss_pred             CcEEEEEEe
Q 019349          312 GYFVEYIFS  320 (342)
Q Consensus       312 g~v~~~~~~  320 (342)
                      |.+++|++-
T Consensus       328 g~i~iw~~~  336 (337)
T 1gxr_A          328 KKATVYEVI  336 (337)
T ss_dssp             SCEEEEEEE
T ss_pred             CeEEEEEEe
Confidence            999999873

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.2e-33  Score=245.01  Aligned_cols=241  Identities=13%  Similarity=0.174  Sum_probs=183.3

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC--cEE--EEEeeCCEEEEEEcCC--CCeEEEEcCCCCCCCCCC
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLC--YERAVGAFSIVEMLYS--SSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~--~~~--~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~   75 (342)
                      ...|...|++++|+|+|++||+|+.|+ ++|||++..  +.+  +..|.+.+..+.+.+.  ++.++.++.       |+
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~-------D~   77 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-------DG   77 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEET-------TT
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcC-------CC
Confidence            467899999999999999999998887 699998743  333  3345567777777653  566666654       89


Q ss_pred             eEEEEECCCCc--EEEEEe-cCCceEEEEEcCC----eEEEEE-CCeEEEEECCCCce--eeEEeCCCCCceEEEEeeCC
Q 019349           76 RLCLFNTTTGT--ALRELN-FLTSILAVRLNKK----RLVIVL-REKTYIYDANTLAI--LDTIDTVPNLKGLCAFSPSL  145 (342)
Q Consensus        76 ~i~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~----~~~~~~-d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~  145 (342)
                      +|++||+.+++  .+..+. +...|.+++|+|+    .++.++ |++|++||+++...  ...+..+..  .+.+++++|
T Consensus        78 ~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~--~v~~~~~~p  155 (297)
T 2pm7_B           78 KVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAI--GVNSASWAP  155 (297)
T ss_dssp             EEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSS--CEEEEEECC
T ss_pred             EEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccC--ccceEeecC
Confidence            99999998874  444444 4568999999885    344445 88999999987632  234444433  455666666


Q ss_pred             C-------------ccEEEEeCCCCccEEEEEEccCCc----eeEEEecccCCeeEEEECCCC---CEEEEEeCCCcEEE
Q 019349          146 N-------------ACFLAVPASTTKGSVLVYNVMELH----SHCEIDAHQAPLAAIVLSSNG---MYIATASEQGTIIR  205 (342)
Q Consensus       146 ~-------------~~~l~~~~~~~~g~i~iwd~~~~~----~~~~~~~h~~~v~~i~~s~dg---~~lat~s~dg~~ir  205 (342)
                      +             +.+|++++  .||+|++||+++++    ....+.+|..+|++++|+|++   ++||+||.|++ |+
T Consensus       156 ~~~~~~~~~~~~~~~~~l~sgs--~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~-v~  232 (297)
T 2pm7_B          156 ATIEEDGEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT-CI  232 (297)
T ss_dssp             CC------------CCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EE
T ss_pred             CcccccccCCCCCCcceEEEEc--CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc-EE
Confidence            4             45888887  68999999998766    566788999999999999985   89999999998 58


Q ss_pred             EEEcCCCe---eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          206 VFLVSEAT---KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       206 lwd~~~~~---~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      +||+.+++   ....+....+...|.+++|+|+++   +||+++.||+|+||+...
T Consensus       233 iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          233 IWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN---VLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSC---CEEEEETTSCEEEEEECT
T ss_pred             EEEeCCCCCccceeeeecccCCCcEEEEEECCCCC---EEEEEcCCCcEEEEEECC
Confidence            99998753   112222123356699999999999   999999999999999753

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=1.1e-32  Score=263.98  Aligned_cols=272  Identities=14%  Similarity=0.184  Sum_probs=212.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      +.+..+|.+++|+|++++|++++.++ +++||.....+. ...+...+..+.+.+++..++..+.       ++.|++||
T Consensus       300 ~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-------dg~v~~~~  372 (577)
T 2ymu_A          300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASD-------DKTVKLWN  372 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSEEEEEE
T ss_pred             ecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeC-------CCEEEEEc
Confidence            35678999999999999999998877 699998766543 2234466777788888888776654       89999999


Q ss_pred             CCCCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           82 TTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        82 ~~~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      . +++.+..+. +...|.+++++++.  ++.++ |+.|++||. +++.+..+..+..  .+.+++++|++.++++++  .
T Consensus       373 ~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~--~v~~~~~s~d~~~l~~~~--~  446 (577)
T 2ymu_A          373 R-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVWGVAFSPDDQTIASAS--D  446 (577)
T ss_dssp             T-TCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSS--CEEEEEECTTSSEEEEEE--T
T ss_pred             C-CCCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCC--CeEEEEECCCCCEEEEEc--C
Confidence            5 567776665 45689999999875  44444 789999995 5667777766544  577788888999999988  6


Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCC
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (342)
                      |+.|++||. +++.+..+.+|..+|++++|+|||++||+++.|++ |++||. +++.+..+..+  ...|++|+|+||++
T Consensus       447 d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~-i~iw~~-~~~~~~~~~~h--~~~v~~l~~s~dg~  521 (577)
T 2ymu_A          447 DKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT-VKLWNR-NGQLLQTLTGH--SSSVRGVAFSPDGQ  521 (577)
T ss_dssp             TSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSE-EEEEET-TSCEEEEEECC--SSCEEEEEECTTSS
T ss_pred             CCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCE-EEEEcC-CCCEEEEEeCC--CCCEEEEEEcCCCC
Confidence            899999996 56788889999999999999999999999999997 589995 68888888643  56799999999999


Q ss_pred             cccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEE
Q 019349          238 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEY  317 (342)
Q Consensus       238 ~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~  317 (342)
                         +|++++.||+|+|||... +....       +.+              |...+..+.|.+++++|++++.||.|++|
T Consensus       522 ---~l~s~~~dg~v~lwd~~~-~~~~~-------~~~--------------h~~~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          522 ---TIASASDDKTVKLWNRNG-QLLQT-------LTG--------------HSSSVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             ---CEEEEETTSEEEEECTTS-CEEEE-------EEC--------------CSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             ---EEEEEECcCEEEEEeCCC-CEEEE-------EcC--------------CCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence               999999999999999632 21110       111              11222334445566899999999999999


Q ss_pred             E
Q 019349          318 I  318 (342)
Q Consensus       318 ~  318 (342)
                      +
T Consensus       577 d  577 (577)
T 2ymu_A          577 N  577 (577)
T ss_dssp             C
T ss_pred             C
Confidence            5

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-33  Score=255.78  Aligned_cols=293  Identities=12%  Similarity=0.134  Sum_probs=222.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      +...|.+++|+|++++|++|+.++ +++|| .+++.....  +...+..+.+.++.+.+++++.       ++.|++||+
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~iwd~  178 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDV-------ENVTILWNV  178 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEET-------TCCEEEEET
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEec-------CCeEEEEEC
Confidence            566999999999999999998887 79999 555554443  4467778888888888877764       899999999


Q ss_pred             CCCcEEEEEecCC-c---------------eEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeC
Q 019349           83 TTGTALRELNFLT-S---------------ILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPS  144 (342)
Q Consensus        83 ~~~~~~~~~~~~~-~---------------v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  144 (342)
                      .+++.+..+.... .               +.++.++++..+++.  ++.|++||+.+++.+..+..+..  .+.+++++
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~--~i~~~~~~  256 (425)
T 1r5m_A          179 ISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHG--PISVLEFN  256 (425)
T ss_dssp             TTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSS--CEEEEEEE
T ss_pred             CCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCC--ceEEEEEC
Confidence            9999888876544 3               888888887766665  78999999999888888765444  56677777


Q ss_pred             CCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc
Q 019349          145 LNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP  224 (342)
Q Consensus       145 ~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~  224 (342)
                      |++.++++++  .+|.|++||+.+++.+..+..|..+|.+++|+|++ +|++++.||. |++||+++++.+..+..+  .
T Consensus       257 ~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~-i~i~d~~~~~~~~~~~~~--~  330 (425)
T 1r5m_A          257 DTNKLLLSAS--DDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGS-VRLWSLKQNTLLALSIVD--G  330 (425)
T ss_dssp             TTTTEEEEEE--TTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSE-EEEEETTTTEEEEEEECT--T
T ss_pred             CCCCEEEEEc--CCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCc-EEEEECCCCcEeEecccC--C
Confidence            8888999887  58999999999999999999999999999999999 9999999997 589999999988887643  4


Q ss_pred             eeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCC--CCccccccccccccccccccccccce--eeeccCCCc
Q 019349          225 STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRG--GRTSSILGSILPESVNEVLDPADHHV--LRNAFPAGV  300 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  300 (342)
                      ..|.+++|+|+++   +|++++.||.|++||++........  ....+.+.   +.....+.....+..  .+..+.+.+
T Consensus       331 ~~i~~~~~s~~~~---~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~v~~~~~s~  404 (425)
T 1r5m_A          331 VPIFAGRISQDGQ---KYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILN---PLPIPLYASYQSSQDNDYIFDLSWNC  404 (425)
T ss_dssp             CCEEEEEECTTSS---EEEEEETTSCEEEEECHHHHC-----------------CEECCEEEEECCTTCCCCEEEEEECT
T ss_pred             ccEEEEEEcCCCC---EEEEEECCCeEEEEECCCCccceeeeecccccccC---cccchhhhhhcCcccCCceEEEEccC
Confidence            5699999999999   9999999999999999876522110  00000000   000001111112211  334455566


Q ss_pred             cccEEEEEEeCCcEEEEEEe
Q 019349          301 KRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       301 ~~~~l~~~~~dg~v~~~~~~  320 (342)
                      ++++|++++.||.|++|+++
T Consensus       405 ~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          405 AGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             TSSEEEEEESSSCCEEEECC
T ss_pred             CCceEEEEecCceEEEEeec
Confidence            66899999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2e-32  Score=250.75  Aligned_cols=237  Identities=11%  Similarity=0.161  Sum_probs=195.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      ..|++++|+|||++|++|+.++ +++||+.+++.+...  +...+..+.+.++++.++.++.       |++|++||+++
T Consensus       124 ~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~-------d~~v~iwd~~~  196 (393)
T 1erj_A          124 LYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-------DRTVRIWDLRT  196 (393)
T ss_dssp             CBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSEEEEEETTT
T ss_pred             eeEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecC-------CCcEEEEECCC
Confidence            3599999999999999998887 699999998776554  4466777888888888877664       89999999999


Q ss_pred             CcEEEEEecCCceEEEEEcC-Ce--EEEEE-CCeEEEEECCCCceeeEEeC-----CCCCceEEEEeeCCCccEEEEeCC
Q 019349           85 GTALRELNFLTSILAVRLNK-KR--LVIVL-REKTYIYDANTLAILDTIDT-----VPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        85 ~~~~~~~~~~~~v~~i~~~~-~~--~~~~~-d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      +++...+.....+.++++++ +.  ++.++ |+.|++||+.+++.+..+..     ..+...+.+++++|++.+|++++ 
T Consensus       197 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-  275 (393)
T 1erj_A          197 GQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGS-  275 (393)
T ss_dssp             TEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEE-
T ss_pred             CeeEEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEe-
Confidence            99998888888999999987 43  34444 88999999999988777632     22345678888899999999888 


Q ss_pred             CCccEEEEEEccCC------------ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349          156 TTKGSVLVYNVMEL------------HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       156 ~~~g~i~iwd~~~~------------~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~  223 (342)
                       .||.|++||+++.            .+...+.+|...|.+++|+|++.+|++|+.||+ |++||+.+++.+..+..+  
T Consensus       276 -~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~-v~iwd~~~~~~~~~l~~h--  351 (393)
T 1erj_A          276 -LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQGH--  351 (393)
T ss_dssp             -TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEECC--
T ss_pred             -CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCe-EEEEECCCCeEEEEECCC--
Confidence             6899999999753            345677899999999999999999999999997 589999999998888643  


Q ss_pred             ceeEEEEEEec------CCCcccEEEEEeCCCcEEEEecCCC
Q 019349          224 PSTIFSLSFGQ------SMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       224 ~~~v~~l~fs~------d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      ...|.+++|++      ++.   +|++|+.||+|+||+++..
T Consensus       352 ~~~v~~v~~~~~~~~~p~~~---~l~sgs~Dg~i~iW~~~~~  390 (393)
T 1erj_A          352 RNSVISVAVANGSSLGPEYN---VFATGSGDCKARIWKYKKI  390 (393)
T ss_dssp             SSCEEEEEECSSCTTCTTCE---EEEEEETTSEEEEEEEEEC
T ss_pred             CCCEEEEEecCCcCcCCCCC---EEEEECCCCcEEECccccc
Confidence            55699999986      566   9999999999999998654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=7.2e-34  Score=263.33  Aligned_cols=301  Identities=15%  Similarity=0.235  Sum_probs=214.6

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEeCCC---Cc---EEEE-EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349            4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSST---GR---LCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         4 ~~~~~~V~~l~fs~-d~~~la~g~~~g-~~v~d~~~---~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (342)
                      ..|..+|++++|+| ++++|++|+.|+ +++||+.+   +.   .... .+...+..+.+.++.+.++.++.       |
T Consensus        60 ~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-------d  132 (437)
T 3gre_A           60 ENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSK-------D  132 (437)
T ss_dssp             TTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEET-------T
T ss_pred             cCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeC-------C
Confidence            45788999999999 999999999887 69999865   32   1222 35678888888887888877764       8


Q ss_pred             CeEEEEECC---CCcEEEEEe-------------cCCceEEEE--EcCC--eEEEEE-CCeEEEEECCCCceeeEEeCCC
Q 019349           75 RRLCLFNTT---TGTALRELN-------------FLTSILAVR--LNKK--RLVIVL-REKTYIYDANTLAILDTIDTVP  133 (342)
Q Consensus        75 ~~i~iwd~~---~~~~~~~~~-------------~~~~v~~i~--~~~~--~~~~~~-d~~i~i~d~~~~~~~~~~~~~~  133 (342)
                      ++|++||+.   +++.+....             ....+.++.  ++++  .++.++ |+.|++||+++++.+..+..+.
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  212 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP  212 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred             CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence            999999994   555544332             223455555  3344  334444 7899999999999999988743


Q ss_pred             CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe-cccCCeeEEEE----CCCCCEEEEEeCCCcEEEEEE
Q 019349          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVL----SSNGMYIATASEQGTIIRVFL  208 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~----s~dg~~lat~s~dg~~irlwd  208 (342)
                      +...+.+++++|++.++++++  .||.|++||+++++++..+. .|..+|++++|    +|++.+|++|+.||+ |++||
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~--~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~-i~iwd  289 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGT--TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTF-LTIWN  289 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEE--TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEE-EEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEc--CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCc-EEEEE
Confidence            445788888899999999888  68999999999999998886 78889999955    567889999999997 58999


Q ss_pred             cCCCeeEEEeccCc------------------------CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCC
Q 019349          209 VSEATKSYSFRRGT------------------------YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR  264 (342)
Q Consensus       209 ~~~~~~~~~~~~~~------------------------~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~  264 (342)
                      +++++.+..+..+.                        +...|.+++|+ +++   +|++++.|++|++||++.++....
T Consensus       290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~---~l~s~~~d~~i~~wd~~~~~~~~~  365 (437)
T 3gre_A          290 FVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK---ILLTDEATSSIVMFSLNELSSSKA  365 (437)
T ss_dssp             TTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE---EEEEEGGGTEEEEEETTCGGGCEE
T ss_pred             cCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce---EEEecCCCCeEEEEECCCcccceE
Confidence            99999888776331                        33458899999 667   999999999999999988765432


Q ss_pred             CCCccccccccccccc----------------cccccccccceeeeccCCCcc--ccEEEEEEeCCcEEEEE
Q 019349          265 GGRTSSILGSILPESV----------------NEVLDPADHHVLRNAFPAGVK--RASVSVITYNGYFVEYI  318 (342)
Q Consensus       265 ~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~dg~v~~~~  318 (342)
                      ..........+.+..+                ........|...+..+.+.+.  ...|++++.||.|++|+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            1111000000000000                000111113333344444433  56999999999999994

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-34  Score=264.26  Aligned_cols=303  Identities=10%  Similarity=0.073  Sum_probs=221.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCC----CcEEEEE--eeCCEEEEEEcCC-CCeEEEEcCCCCCCCCCCe
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSST----GRLCYER--AVGAFSIVEMLYS-SSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~----~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~d~~   76 (342)
                      .+..+|++++|+|++++|++|+.++ +++||+.+    .+.....  +...+..+.+.++ .+.++..+.       |++
T Consensus        65 ~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~-------dg~  137 (416)
T 2pm9_A           65 QVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGN-------NGE  137 (416)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECS-------SSC
T ss_pred             ecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcC-------CCe
Confidence            4678999999999999999998876 69999987    2344333  4456777788776 566666553       899


Q ss_pred             EEEEECCCCc------EEEEE----ecCCceEEEEEcCC--eEEEEE--CCeEEEEECCCCceeeEEeCCCC----CceE
Q 019349           77 LCLFNTTTGT------ALREL----NFLTSILAVRLNKK--RLVIVL--REKTYIYDANTLAILDTIDTVPN----LKGL  138 (342)
Q Consensus        77 i~iwd~~~~~------~~~~~----~~~~~v~~i~~~~~--~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~----~~~~  138 (342)
                      |++||+.+++      .....    .+...|.+++|+++  .++++.  |+.|++||+++++.+..+..+..    ...+
T Consensus       138 v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v  217 (416)
T 2pm9_A          138 IFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQL  217 (416)
T ss_dssp             EEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCE
T ss_pred             EEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCce
Confidence            9999998876      33322    34568999999987  344443  78999999999998888865431    3467


Q ss_pred             EEEeeCCCc-cEEEEeCCCCcc---EEEEEEccCC-ceeEEEe-cccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCC
Q 019349          139 CAFSPSLNA-CFLAVPASTTKG---SVLVYNVMEL-HSHCEID-AHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       139 ~~~~~~~~~-~~l~~~~~~~~g---~i~iwd~~~~-~~~~~~~-~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~  211 (342)
                      .+++++|++ .++++++  .++   .|++||++++ +++..+. +|..+|++++|+| ++++|++++.||+ |++||+++
T Consensus       218 ~~~~~~~~~~~~l~~~~--~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~-v~~wd~~~  294 (416)
T 2pm9_A          218 SVVEWHPKNSTRVATAT--GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNT-VLLWNPES  294 (416)
T ss_dssp             EEEEECSSCTTEEEEEE--CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSE-EEEECSSS
T ss_pred             EEEEECCCCCCEEEEEE--CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCC-EEEeeCCC
Confidence            788888876 5777776  467   9999999986 5677788 8999999999999 9999999999997 58999999


Q ss_pred             CeeEEEeccCcCceeEEEEEEecCC-CcccEEEEEeCCCcEEEEecCCCCCCCCCCC--------cccccc--c---ccc
Q 019349          212 ATKSYSFRRGTYPSTIFSLSFGQSM-QFQDILVATSSSGSLHVFSPGFAINQRRGGR--------TSSILG--S---ILP  277 (342)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~l~fs~d~-~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~--------~~~~~~--~---~~~  277 (342)
                      ++.+..+..+  ...|.+++|+|++ .   +|++++.||+|+|||++..........        ...+..  .   ..+
T Consensus       295 ~~~~~~~~~~--~~~v~~~~~s~~~~~---~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  369 (416)
T 2pm9_A          295 AEQLSQFPAR--GNWCFKTKFAPEAPD---LFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKE  369 (416)
T ss_dssp             CCEEEEEECS--SSCCCCEEECTTCTT---EEEECCSSSEEEEEESCCCCCSSCC----------------------CCS
T ss_pred             CccceeecCC--CCceEEEEECCCCCC---EEEEEecCCcEEEEEccCCCCCcccccccccccCCccccccccccccccc
Confidence            9999888643  4569999999998 7   999999999999999987765432111        000000  0   000


Q ss_pred             ccccccc-cccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          278 ESVNEVL-DPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       278 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      ......| .+..+...+..+.+.+++..|++++.||.|++|++..+
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          370 KPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             CCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSSCBCCBCCCCC
T ss_pred             ccccccccCCccccCCccceEEeeCCeEEEEeCCCCeEEEEEeccC
Confidence            0000011 11112223335566777789999999999999987653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.1e-32  Score=239.82  Aligned_cols=238  Identities=15%  Similarity=0.197  Sum_probs=193.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..|...|.+++|+|++++|++|+.|+ +++||+.+++.....  +...+..+.+.++.+.++..+.       |++|++|
T Consensus        62 ~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-------D~~i~vw  134 (319)
T 3frx_A           62 KGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSR-------DKTIKVW  134 (319)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEET-------TSCEEEE
T ss_pred             eCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeC-------CCeEEEE
Confidence            35788999999999999999998887 699999999776544  4466777888777777776664       8999999


Q ss_pred             ECCCCcEEEEE-ecCCceEEEEEcCC--------eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349           81 NTTTGTALREL-NFLTSILAVRLNKK--------RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        81 d~~~~~~~~~~-~~~~~v~~i~~~~~--------~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                      |++. +++..+ .+...|.++.+.+.        .++.++ |+.|++||+++.+....+..|..  .+.+++++|++.+|
T Consensus       135 d~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~--~v~~~~~sp~g~~l  211 (319)
T 3frx_A          135 TIKG-QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNS--NINTLTASPDGTLI  211 (319)
T ss_dssp             ETTS-CEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCS--CEEEEEECTTSSEE
T ss_pred             ECCC-CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCC--cEEEEEEcCCCCEE
Confidence            9964 455554 45568999999874        234444 88999999999988877765544  57778888899999


Q ss_pred             EEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc------Cc
Q 019349          151 AVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT------YP  224 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~------~~  224 (342)
                      ++++  .||+|++||+.+++.+..+..| .+|.+++|+|++.+|++++.++  +++|++..+..+..+....      +.
T Consensus       212 ~s~~--~dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~sp~~~~la~~~~~~--i~v~~~~~~~~~~~~~~~~~~~~~~~~  286 (319)
T 3frx_A          212 ASAG--KDGEIMLWNLAAKKAMYTLSAQ-DEVFSLAFSPNRYWLAAATATG--IKVFSLDPQYLVDDLRPEFAGYSKAAE  286 (319)
T ss_dssp             EEEE--TTCEEEEEETTTTEEEEEEECC-SCEEEEEECSSSSEEEEEETTE--EEEEEETTEEEEEEECCCCTTCCGGGC
T ss_pred             EEEe--CCCeEEEEECCCCcEEEEecCC-CcEEEEEEcCCCCEEEEEcCCC--cEEEEeCcCeeeeccCccccccccCcC
Confidence            9988  6899999999999998888764 6899999999999999998765  5899999888777664321      23


Q ss_pred             eeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          225 STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      ..+.+++|+||++   +|++|+.||+|+|||+.+.
T Consensus       287 ~~v~~~~~spdg~---~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          287 PHAVSLAWSADGQ---TLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             CCEEEEEECTTSS---EEEEEETTSCEEEEEEEEC
T ss_pred             cceeEEEECCCCC---EEEEeecCceEEEEEEeec
Confidence            4589999999999   9999999999999998653

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=1.5e-32  Score=248.16  Aligned_cols=237  Identities=14%  Similarity=0.100  Sum_probs=193.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc--EEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .+..+|++++|+|++++|++|+.++ +++||+.+++  .....  +...+..+.+.++++.+++++.       |+.|++
T Consensus         6 ~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~-------dg~i~v   78 (372)
T 1k8k_C            6 FLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT-------DRNAYV   78 (372)
T ss_dssp             SCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET-------TSCEEE
T ss_pred             ccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcC-------CCeEEE
Confidence            4678999999999999999997776 6999998886  44333  4467788888888888877764       899999


Q ss_pred             EECCCCcEEEEEe---cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCce---eeEEeCCCCCceEEEEeeCCCccEE
Q 019349           80 FNTTTGTALRELN---FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAI---LDTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        80 wd~~~~~~~~~~~---~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                      ||+.+++......   +...|.+++|+++.  ++++. ++.|++||+...+.   ...+. ..+...+.+++++|++.++
T Consensus        79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l  157 (372)
T 1k8k_C           79 WTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIK-KPIRSTVLSLDWHPNSVLL  157 (372)
T ss_dssp             EEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEEC-TTCCSCEEEEEECTTSSEE
T ss_pred             EECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeee-cccCCCeeEEEEcCCCCEE
Confidence            9999887655543   45689999998764  44444 78999999987753   33332 2334568888888999999


Q ss_pred             EEeCCCCccEEEEEEc------------------cCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349          151 AVPASTTKGSVLVYNV------------------MELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~------------------~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~  212 (342)
                      ++++  .+|.|++||+                  ..++.+..+.+|..+|++++|+|++++|++++.||. |++||++++
T Consensus       158 ~~~~--~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~  234 (372)
T 1k8k_C          158 AAGS--CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKK  234 (372)
T ss_dssp             EEEE--TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGT
T ss_pred             EEEc--CCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCE-EEEEECCCC
Confidence            9887  5899999995                  367788888899999999999999999999999997 589999999


Q ss_pred             eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          213 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      +.+..+..+  ...|.+++|+|++.   +|+++ .|+.|++|+++.
T Consensus       235 ~~~~~~~~~--~~~v~~~~~~~~~~---~l~~~-~d~~i~i~~~~~  274 (372)
T 1k8k_C          235 MAVATLASE--TLPLLAVTFITESS---LVAAG-HDCFPVLFTYDS  274 (372)
T ss_dssp             TEEEEEECS--SCCEEEEEEEETTE---EEEEE-TTSSCEEEEEET
T ss_pred             ceeEEEccC--CCCeEEEEEecCCC---EEEEE-eCCeEEEEEccC
Confidence            998888643  45699999999998   77776 999999999987

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.2e-32  Score=241.82  Aligned_cols=245  Identities=9%  Similarity=0.105  Sum_probs=193.3

Q ss_pred             EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC-CceEEEEEcCCe--EEEEE-CCeE
Q 019349           40 LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKR--LVIVL-REKT  115 (342)
Q Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~--~~~~~-d~~i  115 (342)
                      ..+..+...+..+.+.+++..++..+.       |++|++||+.+++.+..+..+ .+|.++.|+++.  ++.++ |++|
T Consensus         7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~-------dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i   79 (304)
T 2ynn_A            7 KTFSNRSDRVKGIDFHPTEPWVLTTLY-------SGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRI   79 (304)
T ss_dssp             EEEEEECSCEEEEEECSSSSEEEEEET-------TSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEE
T ss_pred             EeecCCCCceEEEEECCCCCEEEEEcC-------CCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEE
Confidence            345667788999999998888887764       899999999999998888754 589999998764  44444 8899


Q ss_pred             EEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECC-CCCE
Q 019349          116 YIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSS-NGMY  193 (342)
Q Consensus       116 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~-dg~~  193 (342)
                      ++||+.+++.+..+..|..  .+.+++++|++.++++++  .||+|++||++++ .....+.+|...|++++|+| ++.+
T Consensus        80 ~vwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~  155 (304)
T 2ynn_A           80 RVFNYNTGEKVVDFEAHPD--YIRSIAVHPTKPYVLSGS--DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPST  155 (304)
T ss_dssp             EEEETTTCCEEEEEECCSS--CEEEEEECSSSSEEEEEE--TTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTE
T ss_pred             EEEECCCCcEEEEEeCCCC--cEEEEEEcCCCCEEEEEC--CCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCE
Confidence            9999999999988876654  577778888888999888  6899999999887 45577889999999999999 6899


Q ss_pred             EEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec--CCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccc
Q 019349          194 IATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ--SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSI  271 (342)
Q Consensus       194 lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~--d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~  271 (342)
                      ||+|+.||+ |++||+.+++....+..+ +...+..++|+|  ++.   +|++++.|++|++||+++.+....       
T Consensus       156 l~sgs~D~~-v~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~---~l~s~s~D~~i~iWd~~~~~~~~~-------  223 (304)
T 2ynn_A          156 FASGCLDRT-VKVWSLGQSTPNFTLTTG-QERGVNYVDYYPLPDKP---YMITASDDLTIKIWDYQTKSCVAT-------  223 (304)
T ss_dssp             EEEEETTSE-EEEEETTCSSCSEEEECC-CTTCEEEEEECCSTTCC---EEEEEETTSEEEEEETTTTEEEEE-------
T ss_pred             EEEEeCCCe-EEEEECCCCCccceeccC-CcCcEEEEEEEEcCCCC---EEEEEcCCCeEEEEeCCCCcccee-------
Confidence            999999997 589999988776666543 334588889886  677   999999999999999987654221       


Q ss_pred             ccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          272 LGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      +.++..              .+..+.+.++++.|++++.||.|++|++..
T Consensus       224 ~~~h~~--------------~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~  259 (304)
T 2ynn_A          224 LEGHMS--------------NVSFAVFHPTLPIIISGSEDGTLKIWNSST  259 (304)
T ss_dssp             EECCSS--------------CEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred             eCCCCC--------------CEEEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence            111111              122233344457899999999999998654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.6e-32  Score=249.96  Aligned_cols=277  Identities=9%  Similarity=0.027  Sum_probs=201.6

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEeCCCCcEEEEE----eeCCEEEEEEcC-CCCeEEEEcCCCCCCCCCCe
Q 019349            4 QSSSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGRLCYER----AVGAFSIVEMLY-SSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~-~~la~g~~~g-~~v~d~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~   76 (342)
                      ..+...|++++|+|++ ++|++|+.++ +++||+.+++.....    +...+..+.+.+ +.+.++.++       .|++
T Consensus        70 ~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~-------~d~~  142 (383)
T 3ei3_B           70 SPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSS-------IRGA  142 (383)
T ss_dssp             CCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEE-------TTTE
T ss_pred             cCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEe-------CCCE
Confidence            4577899999999999 8999998877 699999988665443    345677777766 345555554       4899


Q ss_pred             EEEEECCCCcEEEEEec-C---CceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc-
Q 019349           77 LCLFNTTTGTALRELNF-L---TSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC-  148 (342)
Q Consensus        77 i~iwd~~~~~~~~~~~~-~---~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  148 (342)
                      |++||+.+ ..+..+.. .   ..|.+++++++.  ++.+. |+.|++||+ +++.+..+..+..  .+.+++++|++. 
T Consensus       143 i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~--~v~~~~~~~~~~~  218 (383)
T 3ei3_B          143 TTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKA--KVTHAEFNPRCDW  218 (383)
T ss_dssp             EEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSS--CEEEEEECSSCTT
T ss_pred             EEEEECCC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCC--cEEEEEECCCCCC
Confidence            99999986 44444432 2   569999998864  33344 889999999 5667777765544  577788888887 


Q ss_pred             EEEEeCCCCccEEEEEEccC----CceeEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349          149 FLAVPASTTKGSVLVYNVME----LHSHCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~----~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~  223 (342)
                      ++++++  .||.|++||+++    +..+..+ +|..+|++++|+| +|++|++++.||+ |++||+++++.+..+..+..
T Consensus       219 ~l~s~~--~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~  294 (383)
T 3ei3_B          219 LMATSS--VDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNE-IRVYSSYDWSKPDQIIIHPH  294 (383)
T ss_dssp             EEEEEE--TTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSE-EEEEETTBTTSCSEEEECCB
T ss_pred             EEEEEe--CCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCc-EEEEECCCCccccccccccc
Confidence            788777  689999999987    5566656 7999999999999 9999999999997 58999998876655542210


Q ss_pred             ---------------ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccc-ccccc
Q 019349          224 ---------------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNE-VLDPA  287 (342)
Q Consensus       224 ---------------~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  287 (342)
                                     ...+..++|+||++   +  +++.||+|+|||+++++......      +......+.. .|+|+
T Consensus       295 ~~~~~~~~~~~~~~p~~~~~~~~~s~dg~---~--s~s~d~~i~iwd~~~~~~~~~l~------~~~~~~~~~~~~~s~~  363 (383)
T 3ei3_B          295 RQFQHLTPIKATWHPMYDLIVAGRYPDDQ---L--LLNDKRTIDIYDANSGGLVHQLR------DPNAAGIISLNKFSPT  363 (383)
T ss_dssp             CCCTTSCCCCCEECSSSSEEEEECBCCTT---T--CTTCCCCEEEEETTTCCEEEEEC------BTTBCSCCCEEEECTT
T ss_pred             cccccccceEEeccCCCCceEEEecCCcc---c--ccCCCCeEEEEecCCCceeeeec------CCCCCceEEEEEEecC
Confidence                           12355678888887   4  88899999999998766433211      0000111122 34443


Q ss_pred             ccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          288 DHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                                    +..|++++ ||.|++|+++.
T Consensus       364 --------------g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          364 --------------GDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             --------------SSEEEEEE-TTEEEEEECC-
T ss_pred             --------------ccEEEEec-CCcEEEEecCC
Confidence                          37788885 99999998753

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.2e-32  Score=268.16  Aligned_cols=298  Identities=11%  Similarity=0.101  Sum_probs=213.4

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEeCCCCc-----E--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349            4 QSSSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGR-----L--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~-~~la~g~~~g-~~v~d~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (342)
                      ..|...|++++|+|++ ++|++|+.|+ +++|++.+..     .  .+..|.+.+..+.+.++++.++.++.       |
T Consensus       379 ~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~-------D  451 (694)
T 3dm0_A          379 RAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSW-------D  451 (694)
T ss_dssp             ECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEET-------T
T ss_pred             ccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeC-------C
Confidence            4688999999999875 6889998887 6999987642     1  23445567888888888888877664       8


Q ss_pred             CeEEEEECCCCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeC-CCCCceEEEEeeCCCc--
Q 019349           75 RRLCLFNTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDT-VPNLKGLCAFSPSLNA--  147 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--  147 (342)
                      ++|++||+.+++.+..+. +...|.+++|+++.  ++.++ |++|++||+........... ..+...+.+++++|++  
T Consensus       452 g~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  531 (694)
T 3dm0_A          452 GELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQ  531 (694)
T ss_dssp             SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSS
T ss_pred             CcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCc
Confidence            999999999999888775 45689999998874  44444 88999999865533222211 2233456667776654  


Q ss_pred             cEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE
Q 019349          148 CFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  227 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v  227 (342)
                      ..+++++  .||+|++||+++++....+.+|...|++++|+|+|++|++|+.||+ |++||+++++.+..+..   ...|
T Consensus       532 ~~l~s~s--~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~-i~iwd~~~~~~~~~~~~---~~~v  605 (694)
T 3dm0_A          532 PTIVSAS--WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGV-VLLWDLAEGKKLYSLEA---NSVI  605 (694)
T ss_dssp             CEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSB-CEEEETTTTEEEECCBC---SSCE
T ss_pred             ceEEEEe--CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCe-EEEEECCCCceEEEecC---CCcE
Confidence            5777777  6899999999999999999999999999999999999999999998 58999999998877643   3469


Q ss_pred             EEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEE
Q 019349          228 FSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSV  307 (342)
Q Consensus       228 ~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (342)
                      .+++|+|++.   +|++++ ++.|+|||++................... .. ...-....+......+.+.+++..|++
T Consensus       606 ~~~~~sp~~~---~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~l~~spdg~~l~s  679 (694)
T 3dm0_A          606 HALCFSPNRY---WLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKA-DN-SGPAATKRKVIYCTSLNWSADGSTLFS  679 (694)
T ss_dssp             EEEEECSSSS---EEEEEE-TTEEEEEETTTTEEEEEECCCCC------------------CCCCEEEEEECTTSSEEEE
T ss_pred             EEEEEcCCCc---EEEEEc-CCCEEEEECCCCCChhhhccccccccccc-cc-cccccCCceeEEeeeEEEcCCCCEEEE
Confidence            9999999998   666554 56799999987654321110000000000 00 000000000011223445666689999


Q ss_pred             EEeCCcEEEEEEe
Q 019349          308 ITYNGYFVEYIFS  320 (342)
Q Consensus       308 ~~~dg~v~~~~~~  320 (342)
                      ++.||.|++|++.
T Consensus       680 gs~Dg~i~iW~i~  692 (694)
T 3dm0_A          680 GYTDGVIRVWGIG  692 (694)
T ss_dssp             EETTSEEEEEEC-
T ss_pred             EcCCCeEEEEecc
Confidence            9999999999874

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.9e-33  Score=249.16  Aligned_cols=285  Identities=13%  Similarity=0.121  Sum_probs=209.5

Q ss_pred             CCCCCCeEEEEEcCC---CC--EEEEEcCCcEEEEeCCCCcEEEEEe-------eCCEEEEEEcCCC----CeEEEEcCC
Q 019349            4 QSSSYPVFFVSFNQD---NS--GFALSTKDGFKIFDSSTGRLCYERA-------VGAFSIVEMLYSS----SLLAIVGAG   67 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d---~~--~la~g~~~g~~v~d~~~~~~~~~~~-------~~~~~~~~~~~~~----~~~~~~~~g   67 (342)
                      ..|..+|++++|+|+   +.  ++++++++.+++||+.+++.+....       ...+..+.+.++.    ..+++++  
T Consensus        15 ~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~--   92 (366)
T 3k26_A           15 EDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG--   92 (366)
T ss_dssp             CTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE--
T ss_pred             cCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec--
Confidence            368899999999984   33  5566666778999998775543221       1457777777763    3455444  


Q ss_pred             CCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEcC-C--eEEEEE-CCeEEEEECCCCceeeEEeC-CCCCceEEEE
Q 019349           68 EQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNK-K--RLVIVL-REKTYIYDANTLAILDTIDT-VPNLKGLCAF  141 (342)
Q Consensus        68 ~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~-~--~~~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~  141 (342)
                           .|+.|++||+.+++.+..+. +...|.+++|++ +  .++.++ |+.|++||+.+++.+..+.. ..+...+.++
T Consensus        93 -----~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~  167 (366)
T 3k26_A           93 -----SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSA  167 (366)
T ss_dssp             -----TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEE
T ss_pred             -----CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEE
Confidence                 48999999999999998887 566999999987 4  344444 88999999999988887732 2344568888


Q ss_pred             eeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe----------------------------cccCCeeEEEECCCCCE
Q 019349          142 SPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID----------------------------AHQAPLAAIVLSSNGMY  193 (342)
Q Consensus       142 ~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~----------------------------~h~~~v~~i~~s~dg~~  193 (342)
                      +++|++.++++++  .||.|++||+++++....+.                            +|..+|.+++|+  +++
T Consensus       168 ~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  243 (366)
T 3k26_A          168 DYDLLGEKIMSCG--MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL  243 (366)
T ss_dssp             EECTTSSEEEEEE--TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred             EECCCCCEEEEec--CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence            8888999999888  58999999998876544333                            399999999998  789


Q ss_pred             EEEEeCCCcEEEEEEcCCCee--------------EEEeccCcCceeEEEEEEecC--CCcccEEEEEeCCCcEEEEecC
Q 019349          194 IATASEQGTIIRVFLVSEATK--------------SYSFRRGTYPSTIFSLSFGQS--MQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       194 lat~s~dg~~irlwd~~~~~~--------------~~~~~~~~~~~~v~~l~fs~d--~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      |++++.||. |++||+.+++.              +..+..  +...|.+++|+|+  ++   +|++++.||.|++||++
T Consensus       244 l~~~~~d~~-i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~~---~l~~~~~dg~i~vwd~~  317 (366)
T 3k26_A          244 ILSKSCENA-IVCWKPGKMEDDIDKIKPSESNVTILGRFDY--SQCDIWYMRFSMDFWQK---MLALGNQVGKLYVWDLE  317 (366)
T ss_dssp             EEEECSSSE-EEEEEESSTTCCGGGCCTTCCCEEEEEEEEC--SSCCSSCCCCEECTTSS---EEEEECTTSCEEEEECC
T ss_pred             EEEEecCCE-EEEEeCCCccccccccccCCcchheeccccc--cCCcEEEEEEcCCCCCc---EEEEEecCCcEEEEECC
Confidence            999999997 58999988743              555543  3456889999999  88   99999999999999998


Q ss_pred             CCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          258 FAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      ..+......   ..+...            .+...+..+.+.++++.|++++.||.|++|++.
T Consensus       318 ~~~~~~~~~---~~~~~~------------~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          318 VEDPHKAKC---TTLTHH------------KCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SSSGGGCEE---EEECCT------------TCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CCCCccccc---eEEccc------------ccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            765422100   001111            001112223334445899999999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.5e-32  Score=244.30  Aligned_cols=233  Identities=11%  Similarity=0.106  Sum_probs=189.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc----EEE--EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR----LCY--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      .+...|.+++|+|++++|++|+.++ +++|++.+.+    ...  ..+.+.+..+.+..+. .++..+       .|++|
T Consensus        95 ~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s-------~d~~i  166 (340)
T 1got_B           95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSS-------GDTTC  166 (340)
T ss_dssp             CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEE-------TTSCE
T ss_pred             cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCC-cEEEEE-------CCCcE
Confidence            4667899999999999999998887 5999997752    222  2334556666665443 444444       38999


Q ss_pred             EEEECCCCcEEEEEe-cCCceEEEEEcCCeEE--EEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           78 CLFNTTTGTALRELN-FLTSILAVRLNKKRLV--IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~~~--~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      ++||+.+++++..+. +...|.+++++++...  .++ |+.|++||+++++.+..+..+..  .+.+++++|++.+++++
T Consensus       167 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l~s~  244 (340)
T 1got_B          167 ALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES--DINAICFFPNGNAFATG  244 (340)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcC--CEEEEEEcCCCCEEEEE
Confidence            999999999988876 4558999999987533  333 88999999999998888866544  57778888888999998


Q ss_pred             CCCCccEEEEEEccCCceeEEEec--ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEE
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDA--HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  231 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~--h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~  231 (342)
                      +  .||+|++||+++++.+..+..  +...|++++|+|+|++|++|+.||+ |++||+.+++.+..+..  +...|.+++
T Consensus       245 s--~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~~~~--h~~~v~~~~  319 (340)
T 1got_B          245 S--DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAG--HDNRVSCLG  319 (340)
T ss_dssp             E--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--CSSCEEEEE
T ss_pred             c--CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCe-EEEEEcccCcEeeEeec--CCCcEEEEE
Confidence            8  689999999999888776653  3457999999999999999999997 58999999998888864  356799999


Q ss_pred             EecCCCcccEEEEEeCCCcEEEEe
Q 019349          232 FGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      |+||+.   +|++|+.|++|+|||
T Consensus       320 ~s~dg~---~l~s~s~D~~i~iWd  340 (340)
T 1got_B          320 VTDDGM---AVATGSWDSFLKIWN  340 (340)
T ss_dssp             ECTTSS---CEEEEETTSCEEEEC
T ss_pred             EcCCCC---EEEEEcCCccEEecC
Confidence            999999   999999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.8e-33  Score=258.84  Aligned_cols=278  Identities=9%  Similarity=0.016  Sum_probs=210.1

Q ss_pred             eEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEE-EEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349           10 VFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSI-VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~   87 (342)
                      +++++|+|++++|++|+.++ +++||+.+++.......+.+.. ..+.++++.+++.+.       |+.|++||+.+++.
T Consensus        59 ~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~  131 (420)
T 3vl1_A           59 GKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRADYTAVDTAKLQMRRFILGTT-------EGDIKVLDSNFNLQ  131 (420)
T ss_dssp             CTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSCCEEEEEEECSSSCEEEEEET-------TSCEEEECTTSCEE
T ss_pred             ccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecCCceEEEEEecCCCEEEEEEC-------CCCEEEEeCCCcce
Confidence            45789999999999998777 6999998764433222334433 345566777776654       89999999999888


Q ss_pred             EEEE-ecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEE
Q 019349           88 LREL-NFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLV  163 (342)
Q Consensus        88 ~~~~-~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~i  163 (342)
                      +..+ .+...|.+++|+++.  ++.++ |+.|++||+.+++.+..+..+..  .+.+++++|++.++++++  .||.|++
T Consensus       132 ~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~--~v~~~~~~~~~~~l~s~~--~d~~v~i  207 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRA--TVTDIAIIDRGRNVLSAS--LDGTIRL  207 (420)
T ss_dssp             EEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSS--CEEEEEEETTTTEEEEEE--TTSCEEE
T ss_pred             eeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCC--cEEEEEEcCCCCEEEEEc--CCCcEEE
Confidence            7775 456799999998874  44444 78999999999988888876544  577777788888999888  6899999


Q ss_pred             EEccCCceeEEEecc---c---------------------CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349          164 YNVMELHSHCEIDAH---Q---------------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       164 wd~~~~~~~~~~~~h---~---------------------~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~  219 (342)
                      ||+++++.+..+..|   .                     .++++++|+|+|++|++|+.||. |++||+++++.+..+.
T Consensus       208 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          208 WECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGV-ITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             EETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSC-EEEEETTTCCEEEEEC
T ss_pred             eECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCe-EEEEECCCCceeEEcc
Confidence            999999988888753   3                     44555666899999999999998 5899999999888775


Q ss_pred             cCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCC
Q 019349          220 RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAG  299 (342)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (342)
                      .+ +...|.+++|+|++.  .+|++++.||.|++||++....+..      .+.......+..++.+             
T Consensus       287 ~~-~~~~v~~~~~~~~~~--~~l~~g~~dg~i~vwd~~~~~~~~~------~~~~~~~~~v~~~~~~-------------  344 (420)
T 3vl1_A          287 SK-FTCSCNSLTVDGNNA--NYIYAGYENGMLAQWDLRSPECPVG------EFLINEGTPINNVYFA-------------  344 (420)
T ss_dssp             CT-TSSCEEEEEECSSCT--TEEEEEETTSEEEEEETTCTTSCSE------EEEESTTSCEEEEEEE-------------
T ss_pred             cc-cCCCceeEEEeCCCC--CEEEEEeCCCeEEEEEcCCCcCchh------hhhccCCCCceEEEeC-------------
Confidence            43 456799999999986  3899999999999999987643210      0111111122223333             


Q ss_pred             ccccEEEEEEeCCcEEEEEEecC
Q 019349          300 VKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       300 ~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                       ++..|++++.||.+++|++...
T Consensus       345 -~~~~l~s~~~d~~v~iw~~~~~  366 (420)
T 3vl1_A          345 -AGALFVSSGFDTSIKLDIISDP  366 (420)
T ss_dssp             -TTEEEEEETTTEEEEEEEECCT
T ss_pred             -CCCEEEEecCCccEEEEeccCC
Confidence             2368999999999999998753

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.5e-31  Score=239.21  Aligned_cols=233  Identities=11%  Similarity=0.110  Sum_probs=193.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC--------cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--------RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      +...|.+++|+|+|.+|++|+.++ +++|++...        ......+...+..+.+.++...++.++.       |++
T Consensus       105 ~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~-------D~~  177 (354)
T 2pbi_B          105 PCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASG-------DGT  177 (354)
T ss_dssp             SSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEET-------TSE
T ss_pred             CCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeC-------CCc
Confidence            456789999999999999999887 599987543        2234456677888888888888877765       899


Q ss_pred             EEEEECCCCcEEEEEec-CCceEEEEEcCC----eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349           77 LCLFNTTTGTALRELNF-LTSILAVRLNKK----RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        77 i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~----~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                      |++||+++++++..+.. ...|.++.++++    .++.++ |++|++||+++++.+..+..+..  .+.+++++|++.++
T Consensus       178 v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~--~v~~v~~~p~~~~l  255 (354)
T 2pbi_B          178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHES--DVNSVRYYPSGDAF  255 (354)
T ss_dssp             EEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEE
T ss_pred             EEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC--CeEEEEEeCCCCEE
Confidence            99999999999988864 458999988652    344455 89999999999999888866544  57777888888899


Q ss_pred             EEeCCCCccEEEEEEccCCceeEEEecc--cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEE
Q 019349          151 AVPASTTKGSVLVYNVMELHSHCEIDAH--QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIF  228 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~h--~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~  228 (342)
                      ++++  .|++|++||+++.+.+..+..+  ...+++++|+|+|++|++|+.|++ |++||+.+++.+..+..  +...|.
T Consensus       256 ~s~s--~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~-i~vwd~~~~~~~~~l~~--h~~~v~  330 (354)
T 2pbi_B          256 ASGS--DDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYT-INVWDVLKGSRVSILFG--HENRVS  330 (354)
T ss_dssp             EEEE--TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCSEEEEECC--CSSCEE
T ss_pred             EEEe--CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCc-EEEEECCCCceEEEEEC--CCCcEE
Confidence            9988  6899999999998877666543  457899999999999999999998 58999999998888754  356799


Q ss_pred             EEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          229 SLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      +++|+||++   +|++++.||+|+||+
T Consensus       331 ~l~~spdg~---~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          331 TLRVSPDGT---AFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECTTSS---CEEEEETTSEEEEEC
T ss_pred             EEEECCCCC---EEEEEcCCCCEEecC
Confidence            999999999   999999999999996

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=6.3e-32  Score=242.58  Aligned_cols=302  Identities=11%  Similarity=0.168  Sum_probs=211.6

Q ss_pred             CCCCCeEEEEEcCCCCEE-EEEcC---Cc-EEEEeCCCCcEEEE---EeeCCEEEEEEcCC---CCeEEEEcCCCCCCCC
Q 019349            5 SSSYPVFFVSFNQDNSGF-ALSTK---DG-FKIFDSSTGRLCYE---RAVGAFSIVEMLYS---SSLLAIVGAGEQPSLS   73 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~l-a~g~~---~g-~~v~d~~~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~~~g~~~~~~   73 (342)
                      .+..+|.+++|+|++..| ++|+.   ++ +++||+.+++....   .+...+..+.+.++   ++.++..+.       
T Consensus        16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-------   88 (357)
T 3i2n_A           16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDF-------   88 (357)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEET-------
T ss_pred             CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecC-------
Confidence            478899999999999765 56654   55 69999998865422   34467877887776   366666553       


Q ss_pred             CCeEEEEECCCCc-EEEEEe-cCCceEEEEE------cCC--eEEEEE-CCeEEEEECCCCc-eeeEEeCCCC--CceEE
Q 019349           74 PRRLCLFNTTTGT-ALRELN-FLTSILAVRL------NKK--RLVIVL-REKTYIYDANTLA-ILDTIDTVPN--LKGLC  139 (342)
Q Consensus        74 d~~i~iwd~~~~~-~~~~~~-~~~~v~~i~~------~~~--~~~~~~-d~~i~i~d~~~~~-~~~~~~~~~~--~~~~~  139 (342)
                      |+.|++||+.+++ .+..+. +...|.++.+      +++  .++.++ |+.|++||+.+++ .+..+..+..  ...+.
T Consensus        89 dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~  168 (357)
T 3i2n_A           89 GGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCW  168 (357)
T ss_dssp             TSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEE
T ss_pred             CCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceE
Confidence            8999999999887 777665 4558999965      344  444444 8899999999886 6677755433  23455


Q ss_pred             EEe----eCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECC---CCCEEEEEeCCCcEEEEEEcCCC
Q 019349          140 AFS----PSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS---NGMYIATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       140 ~~~----~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~---dg~~lat~s~dg~~irlwd~~~~  212 (342)
                      ++.    +++++.++++++  .+|.|++||+++++... ...|..+|.+++|+|   ++++|++++.||. |++||++++
T Consensus       169 ~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~  244 (357)
T 3i2n_A          169 TVAFGNAYNQEERVVCAGY--DNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDISMNKLVATSLEGK-FHVFDMRTQ  244 (357)
T ss_dssp             EEEEECCCC-CCCEEEEEE--TTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSSCCEEEEEESTTE-EEEEEEEEE
T ss_pred             EEEEEeccCCCCCEEEEEc--cCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCCCCEEEEECCCCe-EEEEeCcCC
Confidence            555    667888999887  58999999999988743 467899999999999   9999999999997 589999887


Q ss_pred             eeEEEec---cCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccccccccccc
Q 019349          213 TKSYSFR---RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADH  289 (342)
Q Consensus       213 ~~~~~~~---~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (342)
                      +.+..+.   ...+...|.+++|+|++.  .+|++++.||.|++||++...............+ . +.....+.....|
T Consensus       245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~-~-~~~~~~~~~~~~~  320 (357)
T 3i2n_A          245 HPTKGFASVSEKAHKSTVWQVRHLPQNR--ELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMG-V-AGSVSLLQNVTLS  320 (357)
T ss_dssp             ETTTEEEEEEEECCSSCEEEEEEETTEE--EEEEEEETTSEEEEEEEECCSCC--CCTTSCCCC-C-CCEEEEEEEEECC
T ss_pred             CcccceeeeccCCCcCCEEEEEECCCCC--cEEEEEeCCCcEEEeecCCCcccccccCCCCccc-c-ccccceeeccccC
Confidence            6544432   112355699999999986  3699999999999999987654322111110000 0 0000111112222


Q ss_pred             ceeeeccCCCccccEEE-EEEeCCcEEEEEEec
Q 019349          290 HVLRNAFPAGVKRASVS-VITYNGYFVEYIFSI  321 (342)
Q Consensus       290 ~~~~~~~~~~~~~~~l~-~~~~dg~v~~~~~~~  321 (342)
                      ...+..+.+.+++..|+ +++.||.|++|++..
T Consensus       321 ~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          321 TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred             CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence            22334445556667888 799999999999864

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=2.2e-31  Score=246.90  Aligned_cols=280  Identities=13%  Similarity=0.172  Sum_probs=208.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      .+...|.+++|  ++++|++|+.++ +++||+.+++.......+.-.+.++.++++.++..+.       |++|++||+.
T Consensus       131 ~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~sg~~-------dg~i~vwd~~  201 (435)
T 1p22_A          131 ETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSS-------DSTVRVWDVN  201 (435)
T ss_dssp             SSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEET-------TSCEEEEESS
T ss_pred             CCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEECCCEEEEEcC-------CCeEEEEECC
Confidence            45567999888  788999998887 6999999998776655444344455557777766654       8999999999


Q ss_pred             CCcEEEEEec-CCceEEEEEcCCeEEEEE-CCeEEEEECCCCcee---eEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349           84 TGTALRELNF-LTSILAVRLNKKRLVIVL-REKTYIYDANTLAIL---DTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (342)
Q Consensus        84 ~~~~~~~~~~-~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  158 (342)
                      +++.+..+.. ...|.++.++++.++.++ |+.|++||+.+++..   ..+..+  ...+.++++  ++.++++++  .|
T Consensus       202 ~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~~~v~~~~~--~~~~l~s~~--~d  275 (435)
T 1p22_A          202 TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGH--RAAVNVVDF--DDKYIVSAS--GD  275 (435)
T ss_dssp             SCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCC--SSCEEEEEE--ETTEEEEEE--TT
T ss_pred             CCcEEEEEcCCCCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCC--CCcEEEEEe--CCCEEEEEe--CC
Confidence            9999888764 458999999998877777 889999999887654   334333  345666776  455888887  58


Q ss_pred             cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCc
Q 019349          159 GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  238 (342)
Q Consensus       159 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (342)
                      |.|++||+++++.+..+.+|..+|.++++  ++++|++|+.||+ |++||+++++.+..+..  +...|.+++|  ++. 
T Consensus       276 g~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~--h~~~v~~~~~--~~~-  347 (435)
T 1p22_A          276 RTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNT-IRLWDIECGACLRVLEG--HEELVRCIRF--DNK-  347 (435)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSC-EEEEETTTCCEEEEECC--CSSCEEEEEC--CSS-
T ss_pred             CeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCe-EEEEECCCCCEEEEEeC--CcCcEEEEEe--cCC-
Confidence            99999999999999999999999999999  4689999999998 58999999999988864  3556999998  677 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349          239 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       239 ~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                        +|++|+.||+|++||++....+...... ..           +.....|...+..+.+  ++..|++++.||.|++|+
T Consensus       348 --~l~sg~~dg~i~vwd~~~~~~~~~~~~~-~~-----------~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          348 --RIVSGAYDGKIKVWDLVAALDPRAPAGT-LC-----------LRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  411 (435)
T ss_dssp             --EEEEEETTSCEEEEEHHHHTSTTSCTTT-TE-----------EEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             --EEEEEeCCCcEEEEECCCCCCccccccc-hh-----------eeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence              9999999999999999766532211000 00           0011111111222222  347899999999999999


Q ss_pred             EecCC
Q 019349          319 FSINN  323 (342)
Q Consensus       319 ~~~~~  323 (342)
                      +....
T Consensus       412 ~~~~~  416 (435)
T 1p22_A          412 FLNDP  416 (435)
T ss_dssp             -----
T ss_pred             CCCCC
Confidence            87543

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.3e-31  Score=246.38  Aligned_cols=286  Identities=14%  Similarity=0.149  Sum_probs=210.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349            9 PVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~   85 (342)
                      .+....|+|++++|++|+.++ +++||+.+++....  .+...+..+.+.++++.++.++.       |++|++||+.++
T Consensus        99 ~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~-------d~~i~iwd~~~~  171 (420)
T 3vl1_A           99 YTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQ-------DMQLKIWSVKDG  171 (420)
T ss_dssp             EEEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEET-------TSEEEEEETTTC
T ss_pred             ceEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeC-------CCeEEEEeCCCC
Confidence            345558899999999998887 69999998877655  34567888888888887777664       899999999999


Q ss_pred             cEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCC-ceE---------------------E
Q 019349           86 TALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNL-KGL---------------------C  139 (342)
Q Consensus        86 ~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~-~~~---------------------~  139 (342)
                      +.+..+. +...|.+++|+++.  ++.++ |+.|++||+++++.+..+..+... ..+                     .
T Consensus       172 ~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~  251 (420)
T 3vl1_A          172 SNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKN  251 (420)
T ss_dssp             CCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCC
T ss_pred             cCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCccc
Confidence            9888876 45689999998764  44444 889999999999988888653321 122                     2


Q ss_pred             EEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe-cccCCeeEEEECCCCC-EEEEEeCCCcEEEEEEcCCCee-EE
Q 019349          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSEATK-SY  216 (342)
Q Consensus       140 ~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~-~lat~s~dg~~irlwd~~~~~~-~~  216 (342)
                      +++++|++.++++++  .+|.|++||+++++.+..+. .|..+|++++|+|+++ +|++|+.||. |++||+++++. +.
T Consensus       252 ~~~~s~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~-i~vwd~~~~~~~~~  328 (420)
T 3vl1_A          252 NLEFGTYGKYVIAGH--VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGM-LAQWDLRSPECPVG  328 (420)
T ss_dssp             TTCSSCTTEEEEEEE--TTSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSE
T ss_pred             ceEEcCCCCEEEEEc--CCCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCe-EEEEEcCCCcCchh
Confidence            234567888998887  68999999999998777665 5889999999999999 9999999997 58999998754 56


Q ss_pred             EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCC--ccccccccccccccccccccccceeee
Q 019349          217 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGR--TSSILGSILPESVNEVLDPADHHVLRN  294 (342)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (342)
                      .+..+ +...|.++.| ++++   +|++++.||+|++|++..+..++....  ....+...........|+|++      
T Consensus       329 ~~~~~-~~~~v~~~~~-~~~~---~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~------  397 (420)
T 3vl1_A          329 EFLIN-EGTPINNVYF-AAGA---LFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDD------  397 (420)
T ss_dssp             EEEES-TTSCEEEEEE-ETTE---EEEEETTTEEEEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCS------
T ss_pred             hhhcc-CCCCceEEEe-CCCC---EEEEecCCccEEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCC------
Confidence            66542 3456888855 5777   899999999999999987654332100  000011111111112333322      


Q ss_pred             ccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          295 AFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       295 ~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                           ..+..|++++.+|.+.+|+++
T Consensus       398 -----~~~g~l~a~g~~g~~~~~~~~  418 (420)
T 3vl1_A          398 -----ESNGEVLEVGKNNFCALYNLS  418 (420)
T ss_dssp             -----SSSCEEEEEETTTEEEEEESC
T ss_pred             -----CCcceEEEEcCCceEEEEecc
Confidence                 111279999999999999864

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=3.6e-32  Score=252.06  Aligned_cols=242  Identities=11%  Similarity=0.136  Sum_probs=180.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc-----------EEEEE--ee------------CCEEEEEEcCCC-
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR-----------LCYER--AV------------GAFSIVEMLYSS-   58 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~-----------~~~~~--~~------------~~~~~~~~~~~~-   58 (342)
                      +.+.|++++|+|+|++||+|+.++ ++|||+.+++           .....  +.            ..+..+.+.++. 
T Consensus        27 ~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~  106 (447)
T 3dw8_B           27 EADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKN  106 (447)
T ss_dssp             GGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCS
T ss_pred             ccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCC
Confidence            457999999999999999999887 6999998765           23333  32            347777887776 


Q ss_pred             -CeEEEEcCCCCCCCCCCeEEEEECCCCcEEE---------------------------------------EE--ecCCc
Q 019349           59 -SLLAIVGAGEQPSLSPRRLCLFNTTTGTALR---------------------------------------EL--NFLTS   96 (342)
Q Consensus        59 -~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~---------------------------------------~~--~~~~~   96 (342)
                       ..+++++       .|++|++||+.+++...                                       .+  .+...
T Consensus       107 ~~~l~s~s-------~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  179 (447)
T 3dw8_B          107 AAQFLLST-------NDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYH  179 (447)
T ss_dssp             SSEEEEEE-------CSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSC
T ss_pred             cceEEEeC-------CCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcc
Confidence             4566555       38999999987644321                                       11  24558


Q ss_pred             eEEEEEcCCeEEE--EECCeEEEEECCC-CceeeEEe-----CCCCCceEEEEeeCCCc-cEEEEeCCCCccEEEEEEcc
Q 019349           97 ILAVRLNKKRLVI--VLREKTYIYDANT-LAILDTID-----TVPNLKGLCAFSPSLNA-CFLAVPASTTKGSVLVYNVM  167 (342)
Q Consensus        97 v~~i~~~~~~~~~--~~d~~i~i~d~~~-~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~l~~~~~~~~g~i~iwd~~  167 (342)
                      |.+++|+++...+  +.|+.|++||+.+ .+.+..+.     ...+...+.+++++|++ .++++++  .||.|++||++
T Consensus       180 v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~--~dg~i~iwd~~  257 (447)
T 3dw8_B          180 INSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSS--SKGTIRLCDMR  257 (447)
T ss_dssp             CCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEE--TTSCEEEEETT
T ss_pred             eEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEe--CCCeEEEEECc
Confidence            9999998875333  3388999999984 44444331     12234467888888887 7888887  68999999999


Q ss_pred             CCce----eEEEecccC------------CeeEEEECCCCCEEEEEeCCCcEEEEEEcCC-CeeEEEeccCcCce-----
Q 019349          168 ELHS----HCEIDAHQA------------PLAAIVLSSNGMYIATASEQGTIIRVFLVSE-ATKSYSFRRGTYPS-----  225 (342)
Q Consensus       168 ~~~~----~~~~~~h~~------------~v~~i~~s~dg~~lat~s~dg~~irlwd~~~-~~~~~~~~~~~~~~-----  225 (342)
                      +++.    +..+..|..            +|++++|+|+|++|++++. |+ |++||+++ ++.+..+..+....     
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~~l~~  335 (447)
T 3dw8_B          258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LS-VKVWDLNMENRPVETYQVHEYLRSKLCS  335 (447)
T ss_dssp             TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SE-EEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred             CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-Ce-EEEEeCCCCccccceeeccccccccccc
Confidence            9886    788888876            8999999999999999998 86 68999997 77777665432100     


Q ss_pred             --------eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          226 --------TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       226 --------~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                              .+..++|+|+++   +|++++.||+|+|||+++.+.
T Consensus       336 ~~~~~~i~~~~~~~~s~~~~---~l~s~s~dg~v~iwd~~~~~~  376 (447)
T 3dw8_B          336 LYENDCIFDKFECCWNGSDS---VVMTGSYNNFFRMFDRNTKRD  376 (447)
T ss_dssp             HHHTSGGGCCCCEEECTTSS---EEEEECSTTEEEEEETTTCCE
T ss_pred             cccccccccceEEEECCCCC---EEEEeccCCEEEEEEcCCCcc
Confidence                    133489999999   999999999999999987653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-32  Score=260.01  Aligned_cols=299  Identities=12%  Similarity=0.049  Sum_probs=205.6

Q ss_pred             CCCeEEEEEcCCC---------CEEEEEc-------------------CCc-EEEEeCCCCcEE------EEEeeCCEEE
Q 019349            7 SYPVFFVSFNQDN---------SGFALST-------------------KDG-FKIFDSSTGRLC------YERAVGAFSI   51 (342)
Q Consensus         7 ~~~V~~l~fs~d~---------~~la~g~-------------------~~g-~~v~d~~~~~~~------~~~~~~~~~~   51 (342)
                      .+.|.+++|+|++         ++||+|+                   .|+ ++|||+++++..      ...+.+.+..
T Consensus       133 ~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~  212 (524)
T 2j04_B          133 GGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWD  212 (524)
T ss_dssp             CC--CCCSCEEECCCCSSCSSEEEEEEEEEC------------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEE
T ss_pred             CCceeEEEecccCCCCccCcCCeEEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEE
Confidence            4678888888876         6677654                   444 699999877532      2233466777


Q ss_pred             EEEcCC------CCeEEEEcCCCCCCCCCCeEEEEECCCCcEE-----------EEEe-cCCceEEEEEcCCeEEEEE--
Q 019349           52 VEMLYS------SSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL-----------RELN-FLTSILAVRLNKKRLVIVL--  111 (342)
Q Consensus        52 ~~~~~~------~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~-----------~~~~-~~~~v~~i~~~~~~~~~~~--  111 (342)
                      +.+.+.      .+.++.++.       |++|++||+.+++..           ..+. +...|.+++|+++..++++  
T Consensus       213 v~wsp~~~~~~~~~~LAs~s~-------DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~~lasgs~  285 (524)
T 2j04_B          213 LKWHEGCHAPHLVGCLSFVSQ-------EGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPTTVVCGFK  285 (524)
T ss_dssp             EEECSSCCCSSSSCEEEEEET-------TSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSSEEEEEET
T ss_pred             EEECCCCCCCCCCceEEEEec-------CCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCCeEEEEeC
Confidence            888775      346665554       899999999876421           2333 3458999999876544443  


Q ss_pred             CCeEEEEECCCCc-eeeEEeCCCCCceEEEE--eeCCCc-cEEEEeCCCCccEEEEEEccCCceeEEEecccC--CeeEE
Q 019349          112 REKTYIYDANTLA-ILDTIDTVPNLKGLCAF--SPSLNA-CFLAVPASTTKGSVLVYNVMELHSHCEIDAHQA--PLAAI  185 (342)
Q Consensus       112 d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~-~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~--~v~~i  185 (342)
                      |++|++||+++++ ....+..|...  +.++  ++++++ .+||+++  .||+|+|||+++++++.++.+|..  .|.++
T Consensus       286 DgtV~lWD~~~~~~~~~~~~~H~~~--V~sv~~~~s~~g~~~laS~S--~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v  361 (524)
T 2j04_B          286 NGFVAEFDLTDPEVPSFYDQVHDSY--ILSVSTAYSDFEDTVVSTVA--VDGYFYIFNPKDIATTKTTVSRFRGSNLVPV  361 (524)
T ss_dssp             TSEEEEEETTBCSSCSEEEECSSSC--EEEEEEECCTTSCCEEEEEE--TTSEEEEECGGGHHHHCEEEEECSCCSCCCE
T ss_pred             CCEEEEEECCCCCCceEEeeccccc--EEEEEEEcCCCCCeEEEEec--cCCeEEEEECCCCCcccccccccccCcccce
Confidence            8999999998764 44456666554  5544  566776 7888888  689999999999888878888764  58999


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCC
Q 019349          186 VLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRG  265 (342)
Q Consensus       186 ~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~  265 (342)
                      +|+|+++.|++++.|++ ||+||++++..+..+..  +...|++|+|||+++   +|++|+.||+|++||+.... ....
T Consensus       362 ~fsp~~~~l~s~~~d~t-v~lwd~~~~~~~~~l~g--H~~~V~sva~Sp~g~---~l~Sgs~Dgtv~lwd~~~~~-~~~~  434 (524)
T 2j04_B          362 VYCPQIYSYIYSDGASS-LRAVPSRAAFAVHPLVS--RETTITAIGVSRLHP---MVLAGSADGSLIITNAARRL-LHGI  434 (524)
T ss_dssp             EEETTTTEEEEECSSSE-EEEEETTCTTCCEEEEE--CSSCEEEEECCSSCC---BCEEEETTTEEECCBSCSST-TTCC
T ss_pred             EeCCCcCeEEEeCCCCc-EEEEECcccccceeeec--CCCceEEEEeCCCCC---eEEEEECCCEEEEEechHhh-cccc
Confidence            99999999999999987 69999999988777754  356799999999999   99999999999999986532 1111


Q ss_pred             CCcc-----ccc--cccccccc-cc------c--cc--------ccccceeeeccCCCcccc---EEEEEEeCCcEEEEE
Q 019349          266 GRTS-----SIL--GSILPESV-NE------V--LD--------PADHHVLRNAFPAGVKRA---SVSVITYNGYFVEYI  318 (342)
Q Consensus       266 ~~~~-----~~~--~~~~~~~~-~~------~--~~--------~~~~~~~~~~~~~~~~~~---~l~~~~~dg~v~~~~  318 (342)
                      ....     ..+  -.+.|..- ..      +  |.        ..+|...+..+++.|+++   .|++++.||.|++|+
T Consensus       435 ~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          435 KNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             ------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             ccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence            1000     000  01111110 00      1  11        112233445566777643   788888899999999


Q ss_pred             EecCC
Q 019349          319 FSINN  323 (342)
Q Consensus       319 ~~~~~  323 (342)
                      ++-++
T Consensus       515 l~~~~  519 (524)
T 2j04_B          515 LSLEH  519 (524)
T ss_dssp             CSCC-
T ss_pred             ccccc
Confidence            87654

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=6.3e-31  Score=251.76  Aligned_cols=273  Identities=13%  Similarity=0.136  Sum_probs=209.1

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      +.+..+|.+++|+||++.|++++.++ +++||.+. +....  .+...+..+.+.++.+.++..+.       |++|++|
T Consensus       259 ~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~-~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~-------d~~i~~w  330 (577)
T 2ymu_A          259 TGHSSSVNGVAFRPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD-------DKTVKLW  330 (577)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSCEEEE
T ss_pred             ecCCCCEEEEEEcCCCCEEEEEeCCCEEEEEeCCC-cEEEEEecCCCCeEEEEECCCCCEEEEEeC-------CCeEEEE
Confidence            45778999999999999999998876 69999754 43333  34466777778777788877664       8999999


Q ss_pred             ECCCCcEEEEEecCCceEEEEEcCCeEEE--EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           81 NTTTGTALRELNFLTSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~~~~~~~--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      |...........+...+.+++++++...+  +. ++.+++||. +++.+..+..+..  .+.+++++|++.+|++++  .
T Consensus       331 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~--~v~~~~~s~dg~~l~~~~--~  405 (577)
T 2ymu_A          331 NRNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS--SVRGVAFSPDGQTIASAS--D  405 (577)
T ss_dssp             ETTSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSS--CEEEEEECTTSSCEEEEE--T
T ss_pred             eCCCCeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCC--CeEEEEECCCCCEEEEEe--C
Confidence            98655433333355689999999875433  33 789999995 5667777766544  567778888899999888  6


Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCC
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (342)
                      |+.|++||. +++.+..+.+|..+|++++|+||+++|++++.|++ |++||. +++.+..+..  +...|.+++|+||++
T Consensus       406 d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~-v~~w~~-~~~~~~~~~~--~~~~v~~~~~spd~~  480 (577)
T 2ymu_A          406 DKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKT-VKLWNR-NGQLLQTLTG--HSSSVRGVAFSPDGQ  480 (577)
T ss_dssp             TSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSE-EEEEET-TSCEEEEEEC--CSSCEEEEEECTTSC
T ss_pred             CCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCE-EEEEEC-CCCEEEEEcC--CCCCEEEEEEcCCCC
Confidence            899999995 56788889999999999999999999999999997 589996 5677777754  355799999999999


Q ss_pred             cccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEE
Q 019349          238 FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEY  317 (342)
Q Consensus       238 ~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~  317 (342)
                         +|++++.|++|++||... +..+.       +.              .|...+..+.+.+++.+|++++.||.|++|
T Consensus       481 ---~las~~~d~~i~iw~~~~-~~~~~-------~~--------------~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw  535 (577)
T 2ymu_A          481 ---TIASASDDKTVKLWNRNG-QLLQT-------LT--------------GHSSSVRGVAFSPDGQTIASASDDKTVKLW  535 (577)
T ss_dssp             ---EEEEEETTSEEEEEETTS-CEEEE-------EE--------------CCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             ---EEEEEeCCCEEEEEcCCC-CEEEE-------Ee--------------CCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence               999999999999999542 21110       11              111122334445566899999999999999


Q ss_pred             EE
Q 019349          318 IF  319 (342)
Q Consensus       318 ~~  319 (342)
                      +.
T Consensus       536 d~  537 (577)
T 2ymu_A          536 NR  537 (577)
T ss_dssp             CT
T ss_pred             eC
Confidence            74

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.1e-31  Score=240.54  Aligned_cols=276  Identities=11%  Similarity=0.100  Sum_probs=211.1

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEe---eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349           10 VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA---VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      +.+++|++ +.+++++.+..+++||+.+++......   ...+..+.+.++++.+++.+.       |+.|++||+.+++
T Consensus        96 ~~~~~~s~-~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~-------dg~i~iwd~~~~~  167 (401)
T 4aez_A           96 LNLLDWSN-LNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLG-------NGLVDIYDVESQT  167 (401)
T ss_dssp             CBCEEECT-TSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEET-------TSCEEEEETTTCC
T ss_pred             EEEEeecC-CCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECC-------CCeEEEEECcCCe
Confidence            45578876 345555555568999999997654433   356788888888888877664       8999999999999


Q ss_pred             EEEEEe-cCCceEEEEEcCCeEEEEE-CCeEEEEECCC-CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEE
Q 019349           87 ALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLV  163 (342)
Q Consensus        87 ~~~~~~-~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~i  163 (342)
                      .+..+. +...|.++.++++.++.++ |+.|++||++. ...+..+..+.  ..+.+++++|++.++++++  .||.|++
T Consensus       168 ~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~s~~--~d~~v~i  243 (401)
T 4aez_A          168 KLRTMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHS--SEVCGLAWRSDGLQLASGG--NDNVVQI  243 (401)
T ss_dssp             EEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCS--SCEEEEEECTTSSEEEEEE--TTSCEEE
T ss_pred             EEEEecCCCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCC--CCeeEEEEcCCCCEEEEEe--CCCeEEE
Confidence            988875 4558999999988888777 88999999984 55666666544  4677888888899999988  6899999


Q ss_pred             EEccCCceeEEEecccCCeeEEEECCCC-CEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCccc
Q 019349          164 YNVMELHSHCEIDAHQAPLAAIVLSSNG-MYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  240 (342)
Q Consensus       164 wd~~~~~~~~~~~~h~~~v~~i~~s~dg-~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~  240 (342)
                      ||+++++++..+..|..+|.+++|+|++ .++++++  .||. |++||+.+++.+..+..   ...|.+++|+|+++   
T Consensus       244 wd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~-i~i~d~~~~~~~~~~~~---~~~v~~~~~s~~~~---  316 (401)
T 4aez_A          244 WDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQ-IHFWNAATGARVNTVDA---GSQVTSLIWSPHSK---  316 (401)
T ss_dssp             EETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCE-EEEEETTTCCEEEEEEC---SSCEEEEEECSSSS---
T ss_pred             ccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCE-EEEEECCCCCEEEEEeC---CCcEEEEEECCCCC---
Confidence            9999999999999999999999999976 5666665  6887 58999999998888742   34699999999999   


Q ss_pred             EEEEE--eCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349          241 ILVAT--SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       241 ~l~~~--s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                      +|+++  +.||.|++||++........     .+..+........|+              +++..|++++.||.|++|+
T Consensus       317 ~l~~~~g~~dg~i~v~~~~~~~~~~~~-----~~~~h~~~v~~~~~s--------------~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          317 EIMSTHGFPDNNLSIWSYSSSGLTKQV-----DIPAHDTRVLYSALS--------------PDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             EEEEEECTTTCEEEEEEEETTEEEEEE-----EEECCSSCCCEEEEC--------------TTSSEEEEECTTSEEEEEE
T ss_pred             eEEEEeecCCCcEEEEecCCccceeEE-----EecCCCCCEEEEEEC--------------CCCCEEEEEeCCCcEEEEE
Confidence            88884  48999999998764322110     011111111122344              4448999999999999999


Q ss_pred             EecCC
Q 019349          319 FSINN  323 (342)
Q Consensus       319 ~~~~~  323 (342)
                      +...+
T Consensus       378 ~~~~~  382 (401)
T 4aez_A          378 VYDGD  382 (401)
T ss_dssp             CCC--
T ss_pred             CCCCc
Confidence            86544

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-30  Score=230.00  Aligned_cols=274  Identities=9%  Similarity=0.061  Sum_probs=209.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..|..+|++++| |++++|++|+.++ +++||+.+++....  .+...+..+.+.++.+.++..+.       ++.|++|
T Consensus        15 ~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------dg~i~~~   86 (313)
T 3odt_A           15 KGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK-------DTMINGV   86 (313)
T ss_dssp             CCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET-------TSCEEEE
T ss_pred             hCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC-------CCeEEEE
Confidence            468899999999 9999999999888 69999988865543  34567888888888888887764       8999999


Q ss_pred             ECCCC---cEEEEEe-cCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC-CccEEEEeC
Q 019349           81 NTTTG---TALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL-NACFLAVPA  154 (342)
Q Consensus        81 d~~~~---~~~~~~~-~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~  154 (342)
                      |+...   +.+..+. +...|.++.++++.+++++ |+.|++||  .++.+..+..+..+  +.++...+ ++..+++++
T Consensus        87 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~--v~~~~~~~~~~~~l~~~~  162 (313)
T 3odt_A           87 PLFATSGEDPLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNAS--VWDAKVVSFSENKFLTAS  162 (313)
T ss_dssp             ETTCCTTSCC-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEE--TTEEEEEEECCSSC--EEEEEEEETTTTEEEEEE
T ss_pred             EeeecCCCCcccchhhcccCEEEEEecCCEEEEEeCCCCEEEEc--CCcEEEecccCCCc--eeEEEEccCCCCEEEEEE
Confidence            98654   4444544 4568999999888877777 88999999  66677777766554  44444333 566888877


Q ss_pred             CCCccEEEEEEccCCceeEEEec-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe
Q 019349          155 STTKGSVLVYNVMELHSHCEIDA-HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~~~-h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs  233 (342)
                        .+|.|++||  ..+....+.. |..+|.+++|+|++. |++++.||. |++||+++++.+..+..+  ...|.+++|+
T Consensus       163 --~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~-i~i~d~~~~~~~~~~~~~--~~~i~~~~~~  234 (313)
T 3odt_A          163 --ADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGL-IKLVDMHTGDVLRTYEGH--ESFVYCIKLL  234 (313)
T ss_dssp             --TTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSE-EEEEETTTCCEEEEEECC--SSCEEEEEEC
T ss_pred             --CCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCe-EEEEECCchhhhhhhhcC--CceEEEEEEe
Confidence              589999999  4556677776 999999999999988 999999997 589999999998888643  5579999999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCc
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY  313 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  313 (342)
                      |++.    |++++.||+|++||+++.+.....       ...........|++              ++ .+++++.||.
T Consensus       235 ~~~~----l~~~~~dg~v~iwd~~~~~~~~~~-------~~~~~~i~~~~~~~--------------~~-~~~~~~~dg~  288 (313)
T 3odt_A          235 PNGD----IVSCGEDRTVRIWSKENGSLKQVI-------TLPAISIWSVDCMS--------------NG-DIIVGSSDNL  288 (313)
T ss_dssp             TTSC----EEEEETTSEEEEECTTTCCEEEEE-------ECSSSCEEEEEECT--------------TS-CEEEEETTSC
T ss_pred             cCCC----EEEEecCCEEEEEECCCCceeEEE-------eccCceEEEEEEcc--------------CC-CEEEEeCCCc
Confidence            9985    889999999999999876543211       11111111223333              32 3888999999


Q ss_pred             EEEEEEecCC
Q 019349          314 FVEYIFSINN  323 (342)
Q Consensus       314 v~~~~~~~~~  323 (342)
                      |++|++...+
T Consensus       289 i~iw~~~~~~  298 (313)
T 3odt_A          289 VRIFSQEKSR  298 (313)
T ss_dssp             EEEEESCGGG
T ss_pred             EEEEeCCCCc
Confidence            9999987644

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=8.4e-31  Score=235.79  Aligned_cols=245  Identities=13%  Similarity=0.142  Sum_probs=184.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcE--EEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--CYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      ..+...|.+++|+|++++|++|+.|+ +++|++.++..  ...  .+...+..+.+.++++.++.++.       |++|+
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~-------D~~v~  130 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSR-------DKSVW  130 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSCEE
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEEC-------CCeEE
Confidence            46788999999999999999998877 69999887643  222  34467888888888888887765       89999


Q ss_pred             EEECCCCcE---EEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCcee--eEEeCCCCCceEEEEeeCCCccE
Q 019349           79 LFNTTTGTA---LRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAIL--DTIDTVPNLKGLCAFSPSLNACF  149 (342)
Q Consensus        79 iwd~~~~~~---~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
                      +||+.++..   +..+. +...|.+++|+|+.  ++.++ |+.|++||+.+++..  ..+..|  ...+.+++++|++.+
T Consensus       131 iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h--~~~v~~l~~sp~g~~  208 (345)
T 3fm0_A          131 VWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGH--ESTVWSLAFDPSGQR  208 (345)
T ss_dssp             EEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCC--SSCEEEEEECTTSSE
T ss_pred             EEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC--CCceEEEEECCCCCE
Confidence            999987643   33333 34589999998875  44444 889999999877533  445444  446788888899999


Q ss_pred             EEEeCCCCccEEEEEEccCC---------------ceeEEEec-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe
Q 019349          150 LAVPASTTKGSVLVYNVMEL---------------HSHCEIDA-HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  213 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~---------------~~~~~~~~-h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~  213 (342)
                      |++++  .||+|++||....               +++.++.+ |...|.+++|+|++..|++++.|++ |++|+...+.
T Consensus       209 l~s~s--~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~-i~vw~~~~~~  285 (345)
T 3fm0_A          209 LASCS--DDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDA-IRVFQEDPNS  285 (345)
T ss_dssp             EEEEE--TTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSC-EEEEEECTTS
T ss_pred             EEEEe--CCCeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCe-EEEEEeCCCC
Confidence            99988  6899999997432               23344554 8899999999999999999999998 5999987653


Q ss_pred             e--------EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          214 K--------SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       214 ~--------~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      .        ..... ..+...|++++|+|++.  .+||+++.||+|++|+++..+++.
T Consensus       286 ~~~~~~~~~~~~~~-~~h~~~V~~v~~~p~~~--~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          286 DPQQPTFSLTAHLH-QAHSQDVNCVAWNPKEP--GLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             CTTSCCEEEEEEET-TSSSSCEEEEEECSSST--TEEEEEETTSCEEEEEECC-----
T ss_pred             CcceeeEEEEeeec-ccccCcEeEeEEeCCCc--eEEEEcCCCCcEEEEEecCCCCcc
Confidence            1        11111 12456799999999973  289999999999999998876543

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.3e-31  Score=238.49  Aligned_cols=274  Identities=12%  Similarity=0.078  Sum_probs=207.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEE--EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCY--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      ..+|.+++|+|||+.++++..++ +.+|+........  ..+...+..+.+.+++..++..+        ++.|++||+.
T Consensus         9 ~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~--------dg~i~iw~~~   80 (337)
T 1gxr_A            9 SKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG--------KGCVKVWDIS   80 (337)
T ss_dssp             EEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC--------BSEEEEEETT
T ss_pred             CCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC--------CCeEEEEECC
Confidence            45789999999999998877655 4555544432222  23446677788887777776653        6899999998


Q ss_pred             CCcE---EEEE---ecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCc--eeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349           84 TGTA---LREL---NFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLA--ILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (342)
Q Consensus        84 ~~~~---~~~~---~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~  152 (342)
                      +++.   +..+   .+...|.+++++++.  ++++. ++.|++||+.+++  ....+..+  ...+.+++++|++.++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~  158 (337)
T 1gxr_A           81 HPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSS--APACYALAISPDSKVCFS  158 (337)
T ss_dssp             STTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECS--SSCEEEEEECTTSSEEEE
T ss_pred             CCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccC--CCceEEEEECCCCCEEEE
Confidence            7653   2333   345689999999875  44444 7899999999876  44444443  345777888888889998


Q ss_pred             eCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349          153 PASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  232 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f  232 (342)
                      ++  .+|.|++||+++++.+..+..|..+|.+++|+|++++|++++.||. |++||+++++.+..+.   ....+.+++|
T Consensus       159 ~~--~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~---~~~~v~~~~~  232 (337)
T 1gxr_A          159 CC--SDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNT-VRSWDLREGRQLQQHD---FTSQIFSLGY  232 (337)
T ss_dssp             EE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEE---CSSCEEEEEE
T ss_pred             Ee--CCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCc-EEEEECCCCceEeeec---CCCceEEEEE
Confidence            87  5899999999999999999999999999999999999999999997 5899999999887764   2456999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCC
Q 019349          233 GQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG  312 (342)
Q Consensus       233 s~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  312 (342)
                      +|+++   +|++++.++.|++||++......        +..+........|+              ++++.|++++.||
T Consensus       233 s~~~~---~l~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~v~~~~~~--------------~~~~~l~~~~~dg  287 (337)
T 1gxr_A          233 CPTGE---WLAVGMESSNVEVLHVNKPDKYQ--------LHLHESCVLSLKFA--------------YCGKWFVSTGKDN  287 (337)
T ss_dssp             CTTSS---EEEEEETTSCEEEEETTSSCEEE--------ECCCSSCEEEEEEC--------------TTSSEEEEEETTS
T ss_pred             CCCCC---EEEEEcCCCcEEEEECCCCCeEE--------EcCCccceeEEEEC--------------CCCCEEEEecCCC
Confidence            99999   99999999999999998754311        11111111122333              4447899999999


Q ss_pred             cEEEEEEec
Q 019349          313 YFVEYIFSI  321 (342)
Q Consensus       313 ~v~~~~~~~  321 (342)
                      .+++|++..
T Consensus       288 ~i~~~~~~~  296 (337)
T 1gxr_A          288 LLNAWRTPY  296 (337)
T ss_dssp             EEEEEETTT
T ss_pred             cEEEEECCC
Confidence            999998654

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.1e-33  Score=252.43  Aligned_cols=234  Identities=12%  Similarity=0.123  Sum_probs=175.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC--cEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ...+|++++|+|++++|++|+.++ +++||+.++  +....  .+...+..+.+.++++.++.++.       |++|++|
T Consensus        10 ~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-------d~~v~vw   82 (377)
T 3dwl_C           10 LPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQ-------DRNAYVY   82 (377)
T ss_dssp             CSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEET-------TSSEEEC
T ss_pred             CCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeC-------CCeEEEE
Confidence            457899999999999999997776 699999887  33322  34567888888888888887764       8999999


Q ss_pred             ECCCCc---EEEEE-ecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCc---eeeEEeCCCCCceEEEEeeCCCccEE
Q 019349           81 NTTTGT---ALREL-NFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLA---ILDTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        81 d~~~~~---~~~~~-~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                      |+.+++   ....+ .+...|.+++|+++.  ++.++ |+.|++||+.+++   ....+.. .+...+.+++++|++.++
T Consensus        83 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           83 EKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKR-PLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             ------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECS-SCCSCEEEEEECTTSSEE
T ss_pred             EcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeec-ccCCCeEEEEEcCCCCEE
Confidence            999877   34433 456689999998764  44444 8899999998876   3556654 134567888888999999


Q ss_pred             EEeCCCCccEEEEEEcc------------------CCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349          151 AVPASTTKGSVLVYNVM------------------ELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~------------------~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~  212 (342)
                      ++++  .||.|++||+.                  .++++..+ +|..+|++++|+|+|++|++++.||+ |++||+.++
T Consensus       162 ~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~-i~iwd~~~~  237 (377)
T 3dwl_C          162 AAGC--ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSS-VTIAYPSAP  237 (377)
T ss_dssp             EEEE--SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTE-EC-CEECST
T ss_pred             EEEe--CCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCc-EEEEECCCC
Confidence            9988  58999999985                  24455666 89999999999999999999999997 589999998


Q ss_pred             ee----EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          213 TK----SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       213 ~~----~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +.    +..+..  +...|.+++|+|+++   +|++++.++.+ +|+..
T Consensus       238 ~~~~~~~~~~~~--~~~~v~~~~~s~~~~---~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          238 EQPPRALITVKL--SQLPLRSLLWANESA---IVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             TSCEEECCCEEC--SSSCEEEEEEEETTE---EEEEESSSSEE-EECCC
T ss_pred             CCcceeeEeecC--CCCceEEEEEcCCCC---EEEEEcCCcEE-EEEeC
Confidence            76    555543  345699999999998   88888766666 77665

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=5.2e-31  Score=240.68  Aligned_cols=283  Identities=11%  Similarity=0.097  Sum_probs=207.3

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEeCCCCcEEEE---------------EeeCCEEEEEEcC-CCCeEEEEc
Q 019349            4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYE---------------RAVGAFSIVEMLY-SSSLLAIVG   65 (342)
Q Consensus         4 ~~~~~~V~~l~fs~-d~~~la~g~~~g-~~v~d~~~~~~~~~---------------~~~~~~~~~~~~~-~~~~~~~~~   65 (342)
                      ..|..+|++++|+| ++++|++|+.++ +++||+.+++....               .+...+..+.+.+ +.+.++.++
T Consensus        40 ~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~  119 (408)
T 4a11_B           40 RIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSS  119 (408)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEE
T ss_pred             eccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEe
Confidence            45889999999999 999999998887 79999988743211               1456777788877 555666665


Q ss_pred             CCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC-----eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEE
Q 019349           66 AGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK-----RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLC  139 (342)
Q Consensus        66 ~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~-----~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (342)
                      .       |+.|++||+.+++.+..+.+...+.++.+.+.     .++++. ++.|++||+.+++.+..+..+..  .+.
T Consensus       120 ~-------d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--~v~  190 (408)
T 4a11_B          120 F-------DKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQ--EIL  190 (408)
T ss_dssp             T-------TSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCS--CEE
T ss_pred             C-------CCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCC--cEE
Confidence            3       89999999999999999998889999998763     344444 78999999999988888865544  577


Q ss_pred             EEeeCCCcc-EEEEeCCCCccEEEEEEccCCc-eeEEE---------------ecccCCeeEEEECCCCCEEEEEeCCCc
Q 019349          140 AFSPSLNAC-FLAVPASTTKGSVLVYNVMELH-SHCEI---------------DAHQAPLAAIVLSSNGMYIATASEQGT  202 (342)
Q Consensus       140 ~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~-~~~~~---------------~~h~~~v~~i~~s~dg~~lat~s~dg~  202 (342)
                      +++++|++. ++++++  .||.|++||++++. ++..+               ..|..+|++++|+|+|++|++++.||.
T Consensus       191 ~~~~~~~~~~ll~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  268 (408)
T 4a11_B          191 AVSWSPRYDYILATAS--ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR  268 (408)
T ss_dssp             EEEECSSCTTEEEEEE--TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEECCCCCcEEEEEc--CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence            777888877 466766  68999999998765 33444               578999999999999999999999998


Q ss_pred             EEEEEEcCCCeeEEEeccCcCc----eeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccc
Q 019349          203 IIRVFLVSEATKSYSFRRGTYP----STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPE  278 (342)
Q Consensus       203 ~irlwd~~~~~~~~~~~~~~~~----~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~  278 (342)
                       |++||+.+++....+......    ........ ..+.   .+++++.++.|++||+.+.+....       +.++.. 
T Consensus       269 -i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~i~v~d~~~~~~~~~-------~~~~~~-  335 (408)
T 4a11_B          269 -MRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSC-GCSS---EFVFVPYGSTIAVYTVYSGEQITM-------LKGHYK-  335 (408)
T ss_dssp             -EEEEETTTCCBCCCCCCCCCCCCSSCCCCEECC-SSSS---CEEEEEETTEEEEEETTTCCEEEE-------ECCCSS-
T ss_pred             -EEEEECCCCccceeccccccccccccceeEEec-CCCc---eEEEEecCCEEEEEECcCCcceee-------eccCCC-
Confidence             589999998765443221111    11122222 2233   678888899999999987654321       111111 


Q ss_pred             cccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349          279 SVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       279 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                                   .+..+.+.+++..|++++.||.|++|+++..+
T Consensus       336 -------------~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~  367 (408)
T 4a11_B          336 -------------TVDCCVFQSNFQELYSGSRDCNILAWVPSLYE  367 (408)
T ss_dssp             -------------CEEEEEEETTTTEEEEEETTSCEEEEEECC--
T ss_pred             -------------eEEEEEEcCCCCEEEEECCCCeEEEEeCCCCC
Confidence                         11222334445889999999999999987654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-30  Score=239.40  Aligned_cols=279  Identities=16%  Similarity=0.172  Sum_probs=209.8

Q ss_pred             CCCCeEEEEEcCCCC-EEEEEcCCc-EEEEeC----CCCc------EEEEE------------eeCCEEEEEEcCCCCeE
Q 019349            6 SSYPVFFVSFNQDNS-GFALSTKDG-FKIFDS----STGR------LCYER------------AVGAFSIVEMLYSSSLL   61 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~-~la~g~~~g-~~v~d~----~~~~------~~~~~------------~~~~~~~~~~~~~~~~~   61 (342)
                      +..+|++++|+|+++ +|++|+.++ +++||+    .+++      .....            +...+..+.+.++++.+
T Consensus        44 ~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  123 (425)
T 1r5m_A           44 KLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSI  123 (425)
T ss_dssp             ECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEE
T ss_pred             ccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEE
Confidence            347899999999999 999998877 699999    8877      23222            12367788888888888


Q ss_pred             EEEcCCCCCCCCCCeEEEEECCCCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCce
Q 019349           62 AIVGAGEQPSLSPRRLCLFNTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKG  137 (342)
Q Consensus        62 ~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  137 (342)
                      ++.+.       ++.|++|| .+++.+..+. +...|.+++|+++.  ++++. |+.|++||+.+++.+..+..+.....
T Consensus       124 ~~~~~-------dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~  195 (425)
T 1r5m_A          124 VTGVE-------NGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGS  195 (425)
T ss_dssp             EEEET-------TSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC-----
T ss_pred             EEEeC-------CCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcc
Confidence            77764       89999999 6777777776 45689999998765  44444 88999999999988888866544311


Q ss_pred             -------------EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEE
Q 019349          138 -------------LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTII  204 (342)
Q Consensus       138 -------------~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~i  204 (342)
                                   +.++++.+++ .+++++  .+|.|++||+.+++.+..+..|..+|.+++|+|++++|++++.||. |
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i  271 (425)
T 1r5m_A          196 SINAENHSGDGSLGVDVEWVDDD-KFVIPG--PKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGT-L  271 (425)
T ss_dssp             ----------CCCBSCCEEEETT-EEEEEC--GGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSC-E
T ss_pred             ceeeccccCCcceeeEEEEcCCC-EEEEEc--CCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCE-E
Confidence                         3444445554 455665  5899999999999999999999999999999999999999999998 5


Q ss_pred             EEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccc
Q 019349          205 RVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVL  284 (342)
Q Consensus       205 rlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (342)
                      ++||+++++.+..+..  +...|.+++|+|++    +|++++.|+.|++||++..+....       +.....       
T Consensus       272 ~i~d~~~~~~~~~~~~--~~~~i~~~~~~~~~----~l~~~~~d~~i~i~d~~~~~~~~~-------~~~~~~-------  331 (425)
T 1r5m_A          272 RIWHGGNGNSQNCFYG--HSQSIVSASWVGDD----KVISCSMDGSVRLWSLKQNTLLAL-------SIVDGV-------  331 (425)
T ss_dssp             EEECSSSBSCSEEECC--CSSCEEEEEEETTT----EEEEEETTSEEEEEETTTTEEEEE-------EECTTC-------
T ss_pred             EEEECCCCccceEecC--CCccEEEEEECCCC----EEEEEeCCCcEEEEECCCCcEeEe-------cccCCc-------
Confidence            8999999988888753  35569999999988    699999999999999987653221       000001       


Q ss_pred             cccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349          285 DPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                             .+..+.+.++++.|++++.||.|++|++...+
T Consensus       332 -------~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~  363 (425)
T 1r5m_A          332 -------PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLN  363 (425)
T ss_dssp             -------CEEEEEECTTSSEEEEEETTSCEEEEECHHHH
T ss_pred             -------cEEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence                   11122334445899999999999999987543

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=3.6e-30  Score=237.72  Aligned_cols=275  Identities=13%  Similarity=0.118  Sum_probs=212.9

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEE--ee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYER--AV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      .++.|+||++ +.||+|.++.++|||..+++.....  +.  ..|..+++.++++++++.+.       |++|++||+.+
T Consensus       107 y~~~l~wS~~-n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~-------Dg~v~iWd~~~  178 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS-------SAEVQLWDVQQ  178 (420)
T ss_dssp             TCBCEEECTT-SEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET-------TSCEEEEETTT
T ss_pred             cceeEEECCC-CEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEEC-------CCeEEEEEcCC
Confidence            4677999976 5899999888999999999765433  22  45888888888888887664       89999999999


Q ss_pred             CcEEEEEec-CCceEEEEEcCCeEEEEE-CCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEE
Q 019349           85 GTALRELNF-LTSILAVRLNKKRLVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (342)
Q Consensus        85 ~~~~~~~~~-~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i  161 (342)
                      ++++..+.. ...+.++.+++..++.++ |+.+++||.... ..+..+..+..  .++.+...+++.++++++  .||.|
T Consensus       179 ~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~--~~~~~~~~~~g~~l~s~~--~D~~v  254 (420)
T 4gga_A          179 QKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLASGG--NDNLV  254 (420)
T ss_dssp             TEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--CEEEEEECTTSSEEEEEE--TTSCE
T ss_pred             CcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEeccccc--ceeeeeecCCCCeeeeee--ccccc
Confidence            999988764 458999999988887777 889999999865 44556655444  567777888888999888  68999


Q ss_pred             EEEEccCCc----eeEEEecccCCeeEEEECCCC-CEEEEE--eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349          162 LVYNVMELH----SHCEIDAHQAPLAAIVLSSNG-MYIATA--SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  234 (342)
Q Consensus       162 ~iwd~~~~~----~~~~~~~h~~~v~~i~~s~dg-~~lat~--s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~  234 (342)
                      ++||..+++    .+.....|..+|.+++|+|++ .+++++  +.|++ |++||+.+++.+..+..   ...+.++.|+|
T Consensus       255 ~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~-I~iwd~~t~~~~~~~~~---~~~v~~~~~~~  330 (420)
T 4gga_A          255 NVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVDA---HSQVCSILWSP  330 (420)
T ss_dssp             EEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE-EEEEETTTTEEEEEEEC---SSCEEEEEEET
T ss_pred             eEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE-EEEEeCCccccceeecc---ccceeeeeecC
Confidence            999998765    356677899999999999965 556654  57887 69999999999888753   34588999999


Q ss_pred             CCCcccEEEEEe--CCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCC
Q 019349          235 SMQFQDILVATS--SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNG  312 (342)
Q Consensus       235 d~~~~~~l~~~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg  312 (342)
                      ++.   .|++++  .|++|+|||+.+.+....       +.+              |...+..+.+.+++.+|++++.||
T Consensus       331 ~~~---~lv~~sg~~d~~I~iwd~~~~~~v~~-------l~g--------------H~~~V~~l~~spdg~~l~S~s~D~  386 (420)
T 4gga_A          331 HYK---ELISGHGFAQNQLVIWKYPTMAKVAE-------LKG--------------HTSRVLSLTMSPDGATVASAAADE  386 (420)
T ss_dssp             TTT---EEEEEECTTTCCEEEEETTTCCEEEE-------ECC--------------CSSCEEEEEECTTSSCEEEEETTT
T ss_pred             CCC---eEEEEEecCCCEEEEEECCCCcEEEE-------EcC--------------CCCCEEEEEEcCCCCEEEEEecCC
Confidence            998   777765  789999999987654321       111              122223334455558999999999


Q ss_pred             cEEEEEEecCC
Q 019349          313 YFVEYIFSINN  323 (342)
Q Consensus       313 ~v~~~~~~~~~  323 (342)
                      +|++|++....
T Consensus       387 tvriWdv~~~~  397 (420)
T 4gga_A          387 TLRLWRCFELD  397 (420)
T ss_dssp             EEEEECCSCSS
T ss_pred             eEEEEECCCCC
Confidence            99999986543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.4e-31  Score=243.98  Aligned_cols=241  Identities=13%  Similarity=0.120  Sum_probs=186.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc---------EEEEEeeCCEEEEEEcCCCC-eEEEEcCCCCCCCC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR---------LCYERAVGAFSIVEMLYSSS-LLAIVGAGEQPSLS   73 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~   73 (342)
                      .+...|.+++|+|+|++|++|+.|+ +++||+.+..         ..+..|.+.+..+.+.+... .++.++       .
T Consensus       106 ~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s-------~  178 (380)
T 3iz6_a          106 LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGS-------G  178 (380)
T ss_dssp             CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEEC-------T
T ss_pred             cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEEC-------C
Confidence            4667899999999999999998887 5999986531         11223334444445554433 455444       4


Q ss_pred             CCeEEEEECCCCcEEEEEe------cCCceEEEEEcC---CeEEEEE-CCeEEEEECC-CCceeeEEeCCCCCceEEEEe
Q 019349           74 PRRLCLFNTTTGTALRELN------FLTSILAVRLNK---KRLVIVL-REKTYIYDAN-TLAILDTIDTVPNLKGLCAFS  142 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~------~~~~v~~i~~~~---~~~~~~~-d~~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~  142 (342)
                      |++|++||+.+++.+..+.      +...|.++.+++   +.++.++ |++|++||++ ..+.+..+..|..  .+.+++
T Consensus       179 D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~--~v~~v~  256 (380)
T 3iz6_a          179 DQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEG--DINSVK  256 (380)
T ss_dssp             TSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSS--CCCEEE
T ss_pred             CCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCC--CeEEEE
Confidence            9999999999999887763      345799999965   3344444 8999999997 4466777765544  466677


Q ss_pred             eCCCccEEEEeCCCCccEEEEEEccCCceeEEEeccc-------CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349          143 PSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ-------APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS  215 (342)
Q Consensus       143 ~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~-------~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~  215 (342)
                      ++|++.++++++  .||+|++||+++++++..+..|.       ..|++++|+|+|++|++|+.||. |++||+.+++.+
T Consensus       257 ~~p~~~~l~s~s--~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~-i~vwd~~~~~~~  333 (380)
T 3iz6_a          257 FFPDGQRFGTGS--DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGD-CYVWDTLLAEMV  333 (380)
T ss_dssp             ECTTSSEEEEEC--SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSC-EEEEETTTCCEE
T ss_pred             EecCCCeEEEEc--CCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCC-EEEEECCCCceE
Confidence            778888999988  68999999999999888776543       24899999999999999999998 589999999887


Q ss_pred             EEecc--CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          216 YSFRR--GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       216 ~~~~~--~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      ..+..  ..+...|.+++|+||+.   +|++|+.|++|+||++...+
T Consensus       334 ~~~~~~~~~h~~~v~~l~~s~dg~---~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          334 LNLGTLQNSHEGRISCLGLSSDGS---ALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEECCSCSSCCCCCCEEEECSSSS---EEEEECTTSCEEEEECCSSS
T ss_pred             EEEecccCCCCCceEEEEECCCCC---EEEEeeCCCCEEEEecCCCc
Confidence            77632  23456799999999999   99999999999999987654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.1e-31  Score=234.14  Aligned_cols=237  Identities=13%  Similarity=0.105  Sum_probs=172.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC-------cEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG-------RLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~-------~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (342)
                      +..+|++++|+|++++|++|+.|+ +++||+...       +.+  +..|...+..+.+.+++++++.++.       |+
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~-------D~  129 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSR-------DK  129 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEET-------TS
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeC-------CC
Confidence            788999999999999999998877 699998532       222  2334567888888888888877764       89


Q ss_pred             eEEEEECCCC----cEEEEEe-cCCceEEEEEcCCeE--EEEE-CCeEEEEECCCC--ceeeEEeCCCCCceEEEEeeCC
Q 019349           76 RLCLFNTTTG----TALRELN-FLTSILAVRLNKKRL--VIVL-REKTYIYDANTL--AILDTIDTVPNLKGLCAFSPSL  145 (342)
Q Consensus        76 ~i~iwd~~~~----~~~~~~~-~~~~v~~i~~~~~~~--~~~~-d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~  145 (342)
                      +|++||+...    +++..+. +...|.+++|+|+..  +.++ |++|++||..++  +++..+..|..  .+.+++++|
T Consensus       130 ~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~--~v~~~~~~~  207 (330)
T 2hes_X          130 SVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEG--TVWSSDFDK  207 (330)
T ss_dssp             CEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSS--CEEEEEECC
T ss_pred             EEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCC--cEEEEEecC
Confidence            9999999432    3455554 456899999998753  3344 889999998766  56667765554  455566666


Q ss_pred             C--ccEEEEeCCCCccEEEEEEccCC--------ceeEEEec-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe-
Q 019349          146 N--ACFLAVPASTTKGSVLVYNVMEL--------HSHCEIDA-HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT-  213 (342)
Q Consensus       146 ~--~~~l~~~~~~~~g~i~iwd~~~~--------~~~~~~~~-h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~-  213 (342)
                      +  +..|++++  .|++|++||+..+        .+...+.. |..+|.+++|++++ +|++++.||+ |++||..+++ 
T Consensus       208 ~~~~~~l~s~s--~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~-v~iw~~~~~~~  283 (330)
T 2hes_X          208 TEGVFRLCSGS--DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGV-LAVYEEVDGEW  283 (330)
T ss_dssp             SSSSCEEEEEE--TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSC-EEEEEEETTEE
T ss_pred             CCCeeEEEEEe--CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCE-EEEEEcCCCce
Confidence            5  66888887  6899999998764        34445554 99999999999765 8999999998 5899998874 


Q ss_pred             -eEEEeccCcCceeEEEEEEec--CCCcccEEEEEeCCCcEEEEecCC
Q 019349          214 -KSYSFRRGTYPSTIFSLSFGQ--SMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       214 -~~~~~~~~~~~~~v~~l~fs~--d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                       .+.....++....|.+++|+|  +++   +||+++.||+|+|||++.
T Consensus       284 ~~~~~~~~~h~~~~v~~v~~~~~~~~~---~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          284 KVFAKRALCHGVYEINVVKWLELNGKT---ILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             EEEEEESCTTTTSCEEEEEEC-----C---CEEEEETTSEEEEEEC--
T ss_pred             EEEeccccccccceEEEEEEecCCCce---EEEEecCCCcEEEEEecc
Confidence             333332222222699999999  677   899999999999999864

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.7e-31  Score=236.87  Aligned_cols=244  Identities=12%  Similarity=0.166  Sum_probs=188.8

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC--cEEEEE--eeCCEEEEEEcCC--CCeEEEEcCCCCCCCCCC
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYER--AVGAFSIVEMLYS--SSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~--~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~   75 (342)
                      ...|..+|++++|+|++++|++|+.++ +++||+...  +.....  +...+..+.+.++  .+.++.++.       |+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~-------dg   79 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-------DG   79 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEET-------TS
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEecc-------CC
Confidence            346889999999999999999998777 799999743  443333  4466777777665  667776654       89


Q ss_pred             eEEEEECCCCc--EEEEEe-cCCceEEEEEcCC----eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC--
Q 019349           76 RLCLFNTTTGT--ALRELN-FLTSILAVRLNKK----RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL--  145 (342)
Q Consensus        76 ~i~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~----~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--  145 (342)
                      .|++||+.+++  .+..+. +...|.+++|+++    .+++++ |+.|++||+.+...........+...+.+++++|  
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~  159 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  159 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC
T ss_pred             EEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcc
Confidence            99999999987  445554 4568999999876    344444 8899999998874433332233445677777777  


Q ss_pred             -----------CccEEEEeCCCCccEEEEEEccCCc----eeEEEecccCCeeEEEECCC---CCEEEEEeCCCcEEEEE
Q 019349          146 -----------NACFLAVPASTTKGSVLVYNVMELH----SHCEIDAHQAPLAAIVLSSN---GMYIATASEQGTIIRVF  207 (342)
Q Consensus       146 -----------~~~~l~~~~~~~~g~i~iwd~~~~~----~~~~~~~h~~~v~~i~~s~d---g~~lat~s~dg~~irlw  207 (342)
                                 ++.++++++  .||.|++||+++++    ....+.+|..+|++++|+|+   +++|++++.||. |++|
T Consensus       160 ~~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~-i~iw  236 (379)
T 3jrp_A          160 IEEDGEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIW  236 (379)
T ss_dssp             ----------CTTCEEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC-EEEE
T ss_pred             ccccccccCCCCCCEEEEEe--CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCE-EEEE
Confidence                       578888887  58999999998765    44677889999999999999   899999999998 5899


Q ss_pred             EcCCCe---eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          208 LVSEAT---KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       208 d~~~~~---~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      |+++++   ....+....+...|.+++|+|+++   +|++++.||.|++|+++..
T Consensus       237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN---VLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSC---CEEEEESSSSEEEEEEEET
T ss_pred             eCCCCCccceeeeeccccCCCcEEEEEEcCCCC---EEEEecCCCcEEEEeCCCC
Confidence            999874   222332223456799999999999   9999999999999999753

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=1.4e-31  Score=238.05  Aligned_cols=238  Identities=15%  Similarity=0.161  Sum_probs=174.3

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcE--E--EEEeeCCEEEEEEcCC--CCeEEEEcCCCCCCCCCC
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL--C--YERAVGAFSIVEMLYS--SSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~--~--~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~   75 (342)
                      .+.|..+|++++|+|+|++||+|+.|+ ++|||+.+++.  +  +..|.+.+..+.+.+.  ++.++.++.       |+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~-------D~   81 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSY-------DR   81 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEET-------TS
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEEC-------CC
Confidence            457889999999999999999999887 69999987742  2  2334567777777653  567776654       89


Q ss_pred             eEEEEECCCCc--EEEEEe-cCCceEEEEEcCC--e--EEEEE-CCeEEEEECCCCcee---eEEeCCCCCceEEEEeeC
Q 019349           76 RLCLFNTTTGT--ALRELN-FLTSILAVRLNKK--R--LVIVL-REKTYIYDANTLAIL---DTIDTVPNLKGLCAFSPS  144 (342)
Q Consensus        76 ~i~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~--~--~~~~~-d~~i~i~d~~~~~~~---~~~~~~~~~~~~~~~~~~  144 (342)
                      +|++||+++++  .+..+. +...|.+++|+|+  .  ++.++ |++|++||+......   ..+..+  ...+.+++++
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h--~~~v~~~~~~  159 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAH--TIGCNAVSWA  159 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSS--SSCBCCCEEC
T ss_pred             EEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccc--cCCcceEEEc
Confidence            99999998874  444443 4568999999986  3  33333 889999999875322   222222  2334444444


Q ss_pred             CC-----------------ccEEEEeCCCCccEEEEEEccCC---ceeEEEecccCCeeEEEECCCC----CEEEEEeCC
Q 019349          145 LN-----------------ACFLAVPASTTKGSVLVYNVMEL---HSHCEIDAHQAPLAAIVLSSNG----MYIATASEQ  200 (342)
Q Consensus       145 ~~-----------------~~~l~~~~~~~~g~i~iwd~~~~---~~~~~~~~h~~~v~~i~~s~dg----~~lat~s~d  200 (342)
                      |+                 +.+|++++  .|++|++||++..   +++..+.+|..+|++++|+|++    ++||+||.|
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~l~sgs--~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          160 PAVVPGSLIDHPSGQKPNYIKRFASGG--CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             CCCCC------CCSCCCCCCCBEECCB--TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETT
T ss_pred             cccCCccccccccccCccccceEEEec--CCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCC
Confidence            44                 35777777  6899999999755   4667788999999999999987    899999999


Q ss_pred             CcEEEEEEcCCC---e-eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          201 GTIIRVFLVSEA---T-KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       201 g~~irlwd~~~~---~-~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      |+ |++||+.+.   + ....+.  .+...|.+++|+|+++   +||+++.|++|+||+..
T Consensus       238 ~~-v~iw~~~~~~~~~~~~~~~~--~~~~~v~~v~~sp~g~---~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          238 GR-VFIWTCDDASSNTWSPKLLH--KFNDVVWHVSWSITAN---ILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CE-EEEEECSSTTCCCCBCCEEE--ECSSCEEEEEECTTTC---CEEEEESSSCEEEEEEC
T ss_pred             Ce-EEEEEccCccccchhhhhhh--cCCCcEEEEEEcCCCC---EEEEEcCCCeEEEEEEC
Confidence            98 589999763   1 111221  1245699999999999   99999999999999975

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=5.9e-30  Score=226.53  Aligned_cols=238  Identities=13%  Similarity=0.174  Sum_probs=194.5

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..+..+|.+++|+|++++|++|+.++ +++||+.+++.+...  +...+..+.+.++++.++.++.       |++|++|
T Consensus        62 ~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------d~~i~iw  134 (312)
T 4ery_A           62 SGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSF-------DESVRIW  134 (312)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET-------TSCEEEE
T ss_pred             ccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeC-------CCcEEEE
Confidence            35778999999999999999998887 699999998776554  3456777788888888777664       8999999


Q ss_pred             ECCCCcEEEEEec-CCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           81 NTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        81 d~~~~~~~~~~~~-~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      |+++++++..+.. ..+|.++.++++.  ++.++ |+.|++||+.+++.+..+... +...+..++++|++.++++++  
T Consensus       135 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~--  211 (312)
T 4ery_A          135 DVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDD-DNPPVSFVKFSPNGKYILAAT--  211 (312)
T ss_dssp             ETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCS-SCCCEEEEEECTTSSEEEEEE--
T ss_pred             ECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEecc-CCCceEEEEECCCCCEEEEEc--
Confidence            9999999888764 4589999998864  34444 889999999999888776433 233566778888889999887  


Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeE---EEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAA---IVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~---i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs  233 (342)
                      .||.|++||+.+++.+..+.+|...+.+   ....+++.+|++|+.||. |++||+.+++.+..+..+  ...|.+++|+
T Consensus       212 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~h--~~~v~~~~~~  288 (312)
T 4ery_A          212 LDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNL-VYIWNLQTKEIVQKLQGH--TDVVISTACH  288 (312)
T ss_dssp             TTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSC-EEEEETTTCCEEEEECCC--SSCEEEEEEC
T ss_pred             CCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCE-EEEEECCCchhhhhhhcc--CCcEEEEeec
Confidence            6899999999999999999988765433   233468899999999998 589999999999888643  4569999999


Q ss_pred             cCCCcccEEEEEe--CCCcEEEEecC
Q 019349          234 QSMQFQDILVATS--SSGSLHVFSPG  257 (342)
Q Consensus       234 ~d~~~~~~l~~~s--~dg~i~vwd~~  257 (342)
                      |++.   +|++++  .|++|++|+.+
T Consensus       289 p~~~---~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          289 PTEN---IIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             SSSS---EEEEEECTTTCCEEEEECC
T ss_pred             CcCC---ceEEEEccCCccEEEecCC
Confidence            9999   999987  69999999864

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=7.8e-31  Score=234.41  Aligned_cols=275  Identities=10%  Similarity=0.062  Sum_probs=205.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc----EE-EEEeeCCEEEEEEcCCCC-eEEEEcCCCCCCCCCCe
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR----LC-YERAVGAFSIVEMLYSSS-LLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~----~~-~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~d~~   76 (342)
                      ..|...|++++|+|++++|++|+.++ +++|++.+++    .. ...+...+..+.+.++++ .+++.+.       ++.
T Consensus         8 ~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------dg~   80 (342)
T 1yfq_A            8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV-------QGE   80 (342)
T ss_dssp             SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET-------TSC
T ss_pred             cCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcC-------CCe
Confidence            46889999999999999999998877 6999998776    32 223446788888888888 6766654       899


Q ss_pred             EEEEEC-CCCcEEEEEe--cCCceEEEEEcCC-eEEEEE-CCeEEEEECCC---------CceeeEEeCCCCCceEEEEe
Q 019349           77 LCLFNT-TTGTALRELN--FLTSILAVRLNKK-RLVIVL-REKTYIYDANT---------LAILDTIDTVPNLKGLCAFS  142 (342)
Q Consensus        77 i~iwd~-~~~~~~~~~~--~~~~v~~i~~~~~-~~~~~~-d~~i~i~d~~~---------~~~~~~~~~~~~~~~~~~~~  142 (342)
                      |++||+ .+++......  +...|.++++++. .++.++ |+.|++||+++         ++.+..+.   +...+.+++
T Consensus        81 i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~  157 (342)
T 1yfq_A           81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK---VKNKIFTMD  157 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS---SCCCEEEEE
T ss_pred             EEEEEeccCCceEeccccCCCCceEEEEeCCCCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe---eCCceEEEE
Confidence            999999 8887644444  6678999999863 344444 88999999987         65555443   345677888


Q ss_pred             eCCCccEEEEeCCCCccEEEEEEccC-Cce--eEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCC------
Q 019349          143 PSLNACFLAVPASTTKGSVLVYNVME-LHS--HCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEA------  212 (342)
Q Consensus       143 ~~~~~~~l~~~~~~~~g~i~iwd~~~-~~~--~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~------  212 (342)
                      +++++  +++++  .+|.|++||+++ +..  ......|..+|.+++|+| ++++|++++.||. +++||+..+      
T Consensus       158 ~~~~~--l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~-i~i~~~~~~~~~~~~  232 (342)
T 1yfq_A          158 TNSSR--LIVGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGR-VAVEFFDDQGDDYNS  232 (342)
T ss_dssp             ECSSE--EEEEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSE-EEEEECCTTCCSTTC
T ss_pred             ecCCc--EEEEe--CCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCc-EEEEEEcCCCccccc
Confidence            88876  66665  589999999988 553  334457889999999999 9999999999997 589999877      


Q ss_pred             eeEEEeccCcC-------ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccccccc
Q 019349          213 TKSYSFRRGTY-------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLD  285 (342)
Q Consensus       213 ~~~~~~~~~~~-------~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (342)
                      +.+..+..+..       ...|.+++|+|+++   +|++++.||.|++||+++.+......       .+.         
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~dg~i~vwd~~~~~~~~~~~-------~~h---------  293 (342)
T 1yfq_A          233 SKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHK---FLYTAGSDGIISCWNLQTRKKIKNFA-------KFN---------  293 (342)
T ss_dssp             TTCEEEECCCCCTTCCSSCCCEEEEEECTTTC---CEEEEETTSCEEEEETTTTEEEEECC-------CCS---------
T ss_pred             ccceeeecccccccccccceeEEEEEEcCCCC---EEEEecCCceEEEEcCccHhHhhhhh-------ccc---------
Confidence            66667754321       23799999999999   99999999999999998765432111       000         


Q ss_pred             ccccceeeeccCCCccccEEEEEEeCCc-EEEEE
Q 019349          286 PADHHVLRNAFPAGVKRASVSVITYNGY-FVEYI  318 (342)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~-v~~~~  318 (342)
                          ...+..+.  +++..|++++.||. .+.|.
T Consensus       294 ----~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          294 ----EDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             ----SSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             ----CCCceEec--CCCCeEEEEecCCccccccc
Confidence                11111222  44589999999998 55444

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=8.5e-30  Score=245.15  Aligned_cols=282  Identities=13%  Similarity=0.142  Sum_probs=204.9

Q ss_pred             CCCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEeCCCCcEEEEEe--eC---CEEEEEEcCC-CCeEEEEcCCCCCCCCCC
Q 019349            4 QSSSYPVFFVSFNQDNS-GFALSTKDG-FKIFDSSTGRLCYERA--VG---AFSIVEMLYS-SSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~-~la~g~~~g-~~v~d~~~~~~~~~~~--~~---~~~~~~~~~~-~~~~~~~~~g~~~~~~d~   75 (342)
                      ..+...|.+++|+|++. .|++|+.++ +++||+.+++.+....  ..   .+..+.+.++ ++.+++.+.       ++
T Consensus       157 ~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-------dg  229 (615)
T 1pgu_A          157 SGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-------DR  229 (615)
T ss_dssp             CSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET-------TC
T ss_pred             ecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC-------CC
Confidence            35778999999999998 788888877 6999999988766553  34   6777888887 777776664       89


Q ss_pred             eEEEEECCCCcEEEEE-----ecCCceEEEEEc-CCeEEEEE-CCeEEEEECCCCceeeEEeCCCC--------------
Q 019349           76 RLCLFNTTTGTALREL-----NFLTSILAVRLN-KKRLVIVL-REKTYIYDANTLAILDTIDTVPN--------------  134 (342)
Q Consensus        76 ~i~iwd~~~~~~~~~~-----~~~~~v~~i~~~-~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~--------------  134 (342)
                      .|++||+.+++.+..+     .+...|.++.++ ...++.+. |+.|++||+.+++.+..+..+..              
T Consensus       230 ~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (615)
T 1pgu_A          230 KISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN  309 (615)
T ss_dssp             CEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEET
T ss_pred             eEEEEECCCCCEeEEecccccccCCceEEEEEcCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeCCC
Confidence            9999999999999988     566799999996 33344444 78999999998877666654310              


Q ss_pred             --------------------------------------------------------------CceEEEEeeC--------
Q 019349          135 --------------------------------------------------------------LKGLCAFSPS--------  144 (342)
Q Consensus       135 --------------------------------------------------------------~~~~~~~~~~--------  144 (342)
                                                                                    ...+.++++.        
T Consensus       310 ~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~  389 (615)
T 1pgu_A          310 GRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSI  389 (615)
T ss_dssp             TEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEE
T ss_pred             CeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEE
Confidence                                                                          0011111111        


Q ss_pred             --------------------------CC--------------------------------------ccEEEEeCCCC-cc
Q 019349          145 --------------------------LN--------------------------------------ACFLAVPASTT-KG  159 (342)
Q Consensus       145 --------------------------~~--------------------------------------~~~l~~~~~~~-~g  159 (342)
                                                ++                                      +.++++++  . +|
T Consensus       390 ~~d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~d~  467 (615)
T 1pgu_A          390 SWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGL--EEGN  467 (615)
T ss_dssp             ETTTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEE--TTTS
T ss_pred             eCCCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEcCCEEEEee--cCCC
Confidence                                      00                                      12233332  2 56


Q ss_pred             EEEEEEccCCcee-EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec----
Q 019349          160 SVLVYNVMELHSH-CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ----  234 (342)
Q Consensus       160 ~i~iwd~~~~~~~-~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~----  234 (342)
                      .|++||+.+++.. ..+.+|..+|++++|+|+|++|++++.||. |++||+.+++.+..+.. .+...|.+++|+|    
T Consensus       468 ~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~-i~iw~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~  545 (615)
T 1pgu_A          468 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRWA-FRTSKINAISWKPAEKG  545 (615)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCSC-CCSSCEEEEEECCCC--
T ss_pred             eEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCe-EEEeeCCCCcceeEeec-CCCCceeEEEEcCcccc
Confidence            6666666665444 556789999999999999999999999998 58999999999887753 1456799999999    


Q ss_pred             ------CCCcccEEEEEeCCCcEEEEecCCCC-CCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEE
Q 019349          235 ------SMQFQDILVATSSSGSLHVFSPGFAI-NQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSV  307 (342)
Q Consensus       235 ------d~~~~~~l~~~s~dg~i~vwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (342)
                            +++   +|++++.||+|++||++... ....       +..+              ...+..+.+.+++. |++
T Consensus       546 ~~~~~~~~~---~l~~~~~dg~i~iw~~~~~~~~~~~-------~~~h--------------~~~v~~l~~s~~~~-l~s  600 (615)
T 1pgu_A          546 ANEEEIEED---LVATGSLDTNIFIYSVKRPMKIIKA-------LNAH--------------KDGVNNLLWETPST-LVS  600 (615)
T ss_dssp             ----CCSCC---EEEEEETTSCEEEEESSCTTCCEEE-------TTSS--------------TTCEEEEEEEETTE-EEE
T ss_pred             ccccccCCC---EEEEEcCCCcEEEEECCCCceechh-------hhcC--------------ccceEEEEEcCCCC-eEE
Confidence                  998   99999999999999998763 2111       1111              11122233344447 999


Q ss_pred             EEeCCcEEEEEEec
Q 019349          308 ITYNGYFVEYIFSI  321 (342)
Q Consensus       308 ~~~dg~v~~~~~~~  321 (342)
                      ++.||.|++|+++.
T Consensus       601 ~~~d~~v~iw~~~~  614 (615)
T 1pgu_A          601 SGADACIKRWNVVL  614 (615)
T ss_dssp             EETTSCEEEEEEC-
T ss_pred             ecCCceEEEEeeec
Confidence            99999999999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.5e-30  Score=239.00  Aligned_cols=270  Identities=11%  Similarity=0.160  Sum_probs=198.8

Q ss_pred             CCCCC-eEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            5 SSSYP-VFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         5 ~~~~~-V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      .+..+ +.+++|  ++++|++|+.++ +++||+.+++.+....  .+.+..+.+.++. .++.++       .|++|++|
T Consensus       119 ~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s-------~dg~i~vw  188 (464)
T 3v7d_B          119 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGS-------TDRTVRVW  188 (464)
T ss_dssp             CCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEE-------TTSCEEEE
T ss_pred             CCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEe-------CCCCEEEE
Confidence            45555 567777  457899998887 6999999998776654  4566666665444 444443       48999999


Q ss_pred             ECCCCcEEEEEe-cCCceEEEEEc--CC--eEEEEE-CCeEEEEECCCCceee-----------------------EEeC
Q 019349           81 NTTTGTALRELN-FLTSILAVRLN--KK--RLVIVL-REKTYIYDANTLAILD-----------------------TIDT  131 (342)
Q Consensus        81 d~~~~~~~~~~~-~~~~v~~i~~~--~~--~~~~~~-d~~i~i~d~~~~~~~~-----------------------~~~~  131 (342)
                      |+.+++++..+. +...|.++++.  ++  .++.++ |+.|++||+.+++...                       .+..
T Consensus       189 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (464)
T 3v7d_B          189 DIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG  268 (464)
T ss_dssp             ETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC
T ss_pred             ECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC
Confidence            999999988887 55689999987  33  234444 8899999998765332                       2222


Q ss_pred             CCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 019349          132 VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~  211 (342)
                        +...+.+++++  +.++++++  .||.|++||+.+++++..+.+|..+|.+++|+|++++|++|+.||+ |++||+++
T Consensus       269 --~~~~v~~~~~~--~~~l~~~~--~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~-i~vwd~~~  341 (464)
T 3v7d_B          269 --HMASVRTVSGH--GNIVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLEN  341 (464)
T ss_dssp             --CSSCEEEEEEE--TTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTT
T ss_pred             --ccceEEEEcCC--CCEEEEEe--CCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECCC
Confidence              23345566544  55888887  5899999999999999999999999999999999999999999998 58999999


Q ss_pred             CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccce
Q 019349          212 ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHV  291 (342)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (342)
                      ++.+..+..+  ...|.+++|+  +.   +|++++.||+|++||+++......        ...........|+      
T Consensus       342 ~~~~~~~~~h--~~~v~~~~~~--~~---~l~s~s~dg~v~vwd~~~~~~~~~--------~~~~~~~~~~~~~------  400 (464)
T 3v7d_B          342 GELMYTLQGH--TALVGLLRLS--DK---FLVSAAADGSIRGWDANDYSRKFS--------YHHTNLSAITTFY------  400 (464)
T ss_dssp             TEEEEEECCC--SSCEEEEEEC--SS---EEEEEETTSEEEEEETTTCCEEEE--------EECTTCCCEEEEE------
T ss_pred             CcEEEEEeCC--CCcEEEEEEc--CC---EEEEEeCCCcEEEEECCCCceeee--------ecCCCCccEEEEE------
Confidence            9999988643  5569999997  45   899999999999999987543211        0000000111222      


Q ss_pred             eeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          292 LRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       292 ~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                              +++..|++++ ||.+++|++..
T Consensus       401 --------~~~~~l~~~~-dg~i~iwd~~~  421 (464)
T 3v7d_B          401 --------VSDNILVSGS-ENQFNIYNLRS  421 (464)
T ss_dssp             --------ECSSEEEEEE-TTEEEEEETTT
T ss_pred             --------eCCCEEEEec-CCeEEEEECCC
Confidence                    3335666666 99999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=9.6e-32  Score=249.44  Aligned_cols=241  Identities=12%  Similarity=0.110  Sum_probs=172.1

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEeCCCCcE--EEE--EeeCCEEEEEEcC-CCCeEEEEcCCCCCCCCCCeE
Q 019349            5 SSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGRL--CYE--RAVGAFSIVEMLY-SSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         5 ~~~~~V~~l~fs~-d~~~la~g~~~g-~~v~d~~~~~~--~~~--~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      +++..|+||+|+| ++++||+|+.|| ++|||+.+++.  ...  .|.+.|..+.+.+ +++.++.++.       |++|
T Consensus       117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~-------D~~v  189 (435)
T 4e54_B          117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSM-------EGTT  189 (435)
T ss_dssp             ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECS-------SSCE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeC-------CCEE
Confidence            4567899999999 567899999887 69999987643  222  2446677788875 4567766654       8999


Q ss_pred             EEEECCCCcEEEEEecC---CceEEEEEcCCeEEEE--E-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc-EE
Q 019349           78 CLFNTTTGTALRELNFL---TSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC-FL  150 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~~~---~~v~~i~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l  150 (342)
                      ++||++++.........   ..+.+++++++..+++  . |+.|++||++. +.+..+..|.  ..+.+++++|++. ++
T Consensus       190 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~-~~~~~~~~h~--~~v~~v~~~p~~~~~~  266 (435)
T 4e54_B          190 RLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG-KELWNLRMHK--KKVTHVALNPCCDWFL  266 (435)
T ss_dssp             EEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS-CBCCCSBCCS--SCEEEEEECTTCSSEE
T ss_pred             EEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc-ceeEEEeccc--ceEEeeeecCCCceEE
Confidence            99999876544333322   2577888987753333  3 78999999965 4445555443  4577777777765 56


Q ss_pred             EEeCCCCccEEEEEEccCCceeEE---EecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc---
Q 019349          151 AVPASTTKGSVLVYNVMELHSHCE---IDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP---  224 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~~~~~~~---~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~---  224 (342)
                      ++++  .||.|++||+++.+....   ..+|..+|++++|+|+|++|++++.||+ |++||+.+++....+..+...   
T Consensus       267 ~s~s--~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~-i~iwd~~~~~~~~~~~~~~~~~~~  343 (435)
T 4e54_B          267 ATAS--VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSE-IRVYSASQWDCPLGLIPHPHRHFQ  343 (435)
T ss_dssp             EEEE--TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSC-EEEEESSSSSSEEEECCCCCCCCS
T ss_pred             EEec--CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCE-EEEEECCCCccceEEecccccccc
Confidence            6666  689999999988764433   3579999999999999999999999998 589999999877666433211   


Q ss_pred             -eeEEEEEEecCCCcccEEEEEe------------CCCcEEEEecCCCCC
Q 019349          225 -STIFSLSFGQSMQFQDILVATS------------SSGSLHVFSPGFAIN  261 (342)
Q Consensus       225 -~~v~~l~fs~d~~~~~~l~~~s------------~dg~i~vwd~~~~~~  261 (342)
                       ..+....|+|++.   ++++++            .+++|++||+.+++.
T Consensus       344 ~~~~~~~~~~~~~~---~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~  390 (435)
T 4e54_B          344 HLTPIKAAWHPRYN---LIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM  390 (435)
T ss_dssp             SSCCCBCEECSSSS---CEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred             cceeEEEEEcCCCC---EEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence             1133456666665   555553            346799999887654

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.4e-30  Score=229.74  Aligned_cols=237  Identities=16%  Similarity=0.179  Sum_probs=182.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..|..+|.+++|+|++.+|++|+.|+ +++||+.+++.+...  +...+..+.+.++++.++.++.       |++|++|
T Consensus        73 ~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~-------d~~i~~w  145 (343)
T 2xzm_R           73 TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGA-------EREIKLW  145 (343)
T ss_dssp             CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEET-------TSCEEEE
T ss_pred             ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcC-------CCEEEEE
Confidence            45778999999999999999998887 699999998776544  4567888888888888877664       8999999


Q ss_pred             ECCCCcEEEEE----ecCCceEEEEEcCCe------------EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEee
Q 019349           81 NTTTGTALREL----NFLTSILAVRLNKKR------------LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSP  143 (342)
Q Consensus        81 d~~~~~~~~~~----~~~~~v~~i~~~~~~------------~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  143 (342)
                      |+... .....    .+...|.++.++++.            ++.++ |+.|++||. +.+....+..+..  .+.++++
T Consensus       146 d~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~--~v~~~~~  221 (343)
T 2xzm_R          146 NILGE-CKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHES--NVNHLSI  221 (343)
T ss_dssp             ESSSC-EEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSS--CEEEEEE
T ss_pred             eccCC-ceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccc--cceEEEE
Confidence            99743 33333    234579999998863            44444 899999994 4566666665544  5778888


Q ss_pred             CCCccEEEEeCCCCccEEEEEEccCC-ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE--Eecc
Q 019349          144 SLNACFLAVPASTTKGSVLVYNVMEL-HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY--SFRR  220 (342)
Q Consensus       144 ~~~~~~l~~~~~~~~g~i~iwd~~~~-~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~--~~~~  220 (342)
                      +|++.+|++++  .||.|++||+.+. .....+ .|...|++++|+|++.+|++++ |+. +++||+.+++...  .+..
T Consensus       222 s~~g~~l~sgs--~dg~v~iwd~~~~~~~~~~~-~~~~~v~~v~~sp~~~~la~~~-d~~-v~iw~~~~~~~~~~~~~~~  296 (343)
T 2xzm_R          222 SPNGKYIATGG--KDKKLLIWDILNLTYPQREF-DAGSTINQIAFNPKLQWVAVGT-DQG-VKIFNLMTQSKAPVCTIEA  296 (343)
T ss_dssp             CTTSSEEEEEE--TTCEEEEEESSCCSSCSEEE-ECSSCEEEEEECSSSCEEEEEE-SSC-EEEEESSSCCSCSEEECCC
T ss_pred             CCCCCEEEEEc--CCCeEEEEECCCCcccceee-cCCCcEEEEEECCCCCEEEEEC-CCC-EEEEEeCCCCCCceEEeec
Confidence            89999999988  6899999999544 344444 3566799999999999887665 556 5899998876533  3321


Q ss_pred             C---------cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          221 G---------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       221 ~---------~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      .         .+...|.+++|+|+++   +|++|+.||+|++|+++++
T Consensus       297 ~~~~~~~~~~~~~~~v~~~~~sp~g~---~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          297 EPITKAEGQKGKNPQCTSLAWNALGK---KLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             CSGGGBTTBCCSCCCEEEEEECSSSC---CEEEEETTSEEEEEEEEEE
T ss_pred             CcchhhhhhcCCCCceEEEEECCCCC---eEEEecCCceEEEEEEEcc
Confidence            1         2344699999999999   9999999999999998754

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=4.9e-30  Score=266.38  Aligned_cols=238  Identities=15%  Similarity=0.186  Sum_probs=199.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      +.|...|++++|+|||++|++|+.++ +++||+.+++.+...  +...+..+.+.+++++++.++.       |++|++|
T Consensus       612 ~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~-------d~~v~vw  684 (1249)
T 3sfz_A          612 RPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSA-------DKKVKIW  684 (1249)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSEEEEE
T ss_pred             ecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeC-------CCeEEEE
Confidence            36788999999999999999998887 699999999876654  4467778888888888887764       8999999


Q ss_pred             ECCCCcEEEEEec-CCceEEEEEcC--CeEE--EEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           81 NTTTGTALRELNF-LTSILAVRLNK--KRLV--IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        81 d~~~~~~~~~~~~-~~~v~~i~~~~--~~~~--~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      |+.+++.+..+.. ...|.++.|++  +..+  .++ |+.|++||+.+++.+..+..+..  .+.+++++|++.++++++
T Consensus       685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~--~v~~~~~sp~~~~l~s~s  762 (1249)
T 3sfz_A          685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTN--SVNHCRFSPDDELLASCS  762 (1249)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSS--CEEEEEECSSTTEEEEEE
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCC--CEEEEEEecCCCEEEEEE
Confidence            9999999988864 45899999987  3333  333 78999999999998888876544  577777788888999888


Q ss_pred             CCCccEEEEEEccCCceeEEE-------------------------------------------------------eccc
Q 019349          155 STTKGSVLVYNVMELHSHCEI-------------------------------------------------------DAHQ  179 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~-------------------------------------------------------~~h~  179 (342)
                        .||.|++||+.+++....+                                                       .+|.
T Consensus       763 --~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~  840 (1249)
T 3sfz_A          763 --ADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHH  840 (1249)
T ss_dssp             --SSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSS
T ss_pred             --CCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCC
Confidence              6899999998776543322                                                       1678


Q ss_pred             CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          180 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       180 ~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      ..|.+++|+|+++++++++.||. |++||+.+++.+..+..  +...|.+++|+|+++   +|++++.||+|++|++..
T Consensus       841 ~~v~~~~~sp~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~--h~~~v~~v~~spdg~---~l~s~s~dg~v~vw~~~~  913 (1249)
T 3sfz_A          841 STIQYCDFSPYDHLAVIALSQYC-VELWNIDSRLKVADCRG--HLSWVHGVMFSPDGS---SFLTASDDQTIRVWETKK  913 (1249)
T ss_dssp             SCCCEEEECSSTTEEEEECSSSC-EEEEETTTTEEEEEECC--CSSCEEEEEECTTSS---EEEEEETTSCEEEEEHHH
T ss_pred             CceEEEEEcCCCCEEEEEeCCCe-EEEEEcCCCceeeecCC--CccceEEEEECCCCC---EEEEEeCCCeEEEEEccc
Confidence            89999999999999999999998 58999999999888864  356799999999999   999999999999999764

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.2e-29  Score=235.70  Aligned_cols=280  Identities=14%  Similarity=0.181  Sum_probs=214.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      ..+..+|.+++|+  +++|++|+.++ +++||+.+++.......+.-.+..+.++++.++.++.       |++|++||+
T Consensus       156 ~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~-------dg~i~~wd~  226 (445)
T 2ovr_B          156 VGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR-------DATLRVWDI  226 (445)
T ss_dssp             CCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEET-------TSEEEEEES
T ss_pred             cCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEecCCEEEEEeC-------CCEEEEEEC
Confidence            4578899999998  56888888777 6999999998776654433333344446677666654       899999999


Q ss_pred             CCCcEEEEEec-CCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349           83 TTGTALRELNF-LTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (342)
Q Consensus        83 ~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~  160 (342)
                      .+++.+..+.. ...|.++.++++.+++++ |+.|++||+.+++.+..+..+..  .+.++++  ++..+++++  .||.
T Consensus       227 ~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~--~d~~  300 (445)
T 2ovr_B          227 ETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN--RVYSLQF--DGIHVVSGS--LDTS  300 (445)
T ss_dssp             SSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS--CEEEEEE--CSSEEEEEE--TTSC
T ss_pred             CCCcEEEEEcCCcccEEEEEECCCEEEEEcCCCEEEEEECCCCcEeEEecCCCC--ceEEEEE--CCCEEEEEe--CCCe
Confidence            99999888764 458999999888888777 88999999999998888875544  4666666  456888887  5899


Q ss_pred             EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc-CceeEEEEEEecCCCcc
Q 019349          161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-YPSTIFSLSFGQSMQFQ  239 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~-~~~~v~~l~fs~d~~~~  239 (342)
                      |++||+++++.+..+.+|...+.++.++  +++|++|+.||. |++||+++++.+..+.... +...|.+++|+  +.  
T Consensus       301 i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~--  373 (445)
T 2ovr_B          301 IRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN--  373 (445)
T ss_dssp             EEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS--
T ss_pred             EEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeCCCe-EEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CC--
Confidence            9999999999999999999999998874  679999999998 5899999999988886422 45569999996  45  


Q ss_pred             cEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCc----EE
Q 019349          240 DILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY----FV  315 (342)
Q Consensus       240 ~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----v~  315 (342)
                       +|++++.||+|++||+++++....          +..      .....+...+..+.+.+++..+++++.||.    ++
T Consensus       374 -~l~s~~~dg~v~iwd~~~~~~~~~----------~~~------~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~  436 (445)
T 2ovr_B          374 -FVITSSDDGTVKLWDLKTGEFIRN----------LVT------LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLL  436 (445)
T ss_dssp             -EEEEEETTSEEEEEETTTCCEEEE----------EEE------CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEE
T ss_pred             -EEEEEeCCCeEEEEECCCCceeee----------eec------cccCCCCceEEEEEecCCEEEEEEcccCCCCccEEE
Confidence             899999999999999987754321          000      000011112233344555578999999998    99


Q ss_pred             EEEEecC
Q 019349          316 EYIFSIN  322 (342)
Q Consensus       316 ~~~~~~~  322 (342)
                      +|+++.+
T Consensus       437 v~df~~~  443 (445)
T 2ovr_B          437 VLDFDVD  443 (445)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            9998754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=2.4e-29  Score=222.29  Aligned_cols=272  Identities=13%  Similarity=0.110  Sum_probs=205.4

Q ss_pred             eEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEe--e--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349           10 VFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA--V--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~   85 (342)
                      .++|+||+++ +||+|.++.++|||+++++.+....  .  ..+..+.+.+++++++..+.       |++|++||++++
T Consensus        28 ~~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~-------Dg~v~iw~~~~~   99 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTS-------SAEVQLWDVQQQ   99 (318)
T ss_dssp             CBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEET-------TSEEEEEETTTT
T ss_pred             ceEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEEC-------CCcEEEeecCCc
Confidence            4679999986 8999998889999999998665432  2  45778888888888877664       899999999999


Q ss_pred             cEEEEEecC-CceEEEEEcCCeEEEEE-CCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEE
Q 019349           86 TALRELNFL-TSILAVRLNKKRLVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVL  162 (342)
Q Consensus        86 ~~~~~~~~~-~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~  162 (342)
                      +++..+..+ ..+.++...+..++.+. ++.+++|+.... ..+..+..+..  .+..+...+++.++++++  .||.|+
T Consensus       100 ~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~s~~--~d~~i~  175 (318)
T 4ggc_A          100 KRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQ--EVCGLRWAPDGRHLASGG--NDNLVN  175 (318)
T ss_dssp             EEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSS--CEEEEEECTTSSEEEEEE--TTSCEE
T ss_pred             eeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccC--ceEEEEEcCCCCEEEEEe--cCccee
Confidence            999887654 47888888888777777 789999999775 44455555444  456666777788998887  689999


Q ss_pred             EEEccCCce----eEEEecccCCeeEEEECCCCCEE---EEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC
Q 019349          163 VYNVMELHS----HCEIDAHQAPLAAIVLSSNGMYI---ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  235 (342)
Q Consensus       163 iwd~~~~~~----~~~~~~h~~~v~~i~~s~dg~~l---at~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d  235 (342)
                      +||+++++.    ......|..+|.+++++|++..+   ++++.+++ |++||...+.......   ....+..++|+|+
T Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-i~lwd~~~~~~~~~~~---~~~~v~~~~~~~~  251 (318)
T 4ggc_A          176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH-IRIWNVCSGACLSAVD---AHSQVCSILWSPH  251 (318)
T ss_dssp             EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE-EEEEETTTCCEEEEEE---CSSCEEEEEEETT
T ss_pred             EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE-EEEEeccccccccccc---ceeeeeeeeeccc
Confidence            999987753    34556788999999999976533   45667776 6999999888766553   2345899999999


Q ss_pred             CCcccEEEEEe--CCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCc
Q 019349          236 MQFQDILVATS--SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY  313 (342)
Q Consensus       236 ~~~~~~l~~~s--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  313 (342)
                      +.   .+++++  .|++|+|||+++.+....       +.++              ...+..+.+.+++++|+++|.||+
T Consensus       252 ~~---~~~~~sg~~d~~i~iwd~~~~~~~~~-------l~gH--------------~~~V~~l~~spdg~~l~S~s~D~~  307 (318)
T 4ggc_A          252 YK---ELISGHGFAQNQLVIWKYPTMAKVAE-------LKGH--------------TSRVLSLTMSPDGATVASAAADET  307 (318)
T ss_dssp             TT---EEEEEECTTTCCEEEEETTTCCEEEE-------ECCC--------------SSCEEEEEECTTSSCEEEEETTTE
T ss_pred             cc---ceEEEEEcCCCEEEEEECCCCcEEEE-------EcCC--------------CCCEEEEEEcCCCCEEEEEecCCe
Confidence            98   776654  799999999987665332       1111              112223334445589999999999


Q ss_pred             EEEEEEec
Q 019349          314 FVEYIFSI  321 (342)
Q Consensus       314 v~~~~~~~  321 (342)
                      |++|++.+
T Consensus       308 v~iWd~~~  315 (318)
T 4ggc_A          308 LRLWRCFE  315 (318)
T ss_dssp             EEEECCSC
T ss_pred             EEEEECCC
Confidence            99998754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=8.3e-30  Score=236.83  Aligned_cols=272  Identities=13%  Similarity=0.140  Sum_probs=206.7

Q ss_pred             CCCCC-eEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            5 SSSYP-VFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         5 ~~~~~-V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      .|... +.+++|  +|++|++|+.++ +++||+.+++.+.....+.-.+..+.++++.++.++.       |++|++||+
T Consensus       116 ~h~~~v~~~~~~--~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~l~s~~~-------dg~i~vwd~  186 (445)
T 2ovr_B          116 GHDDHVITCLQF--CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGST-------DRTLKVWNA  186 (445)
T ss_dssp             CSTTSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETTEEEEEET-------TSCEEEEET
T ss_pred             ccCCCcEEEEEE--cCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEecCCEEEEEeC-------CCeEEEEEC
Confidence            45555 455554  688999998887 6999999998776654433333344445667666654       899999999


Q ss_pred             CCCcEEEEEe-cCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349           83 TTGTALRELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (342)
Q Consensus        83 ~~~~~~~~~~-~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~  160 (342)
                      .+++.+..+. +...|.++.++++.+++++ |+.|++||+.+++.+..+..+..  .+.++++  ++..+++++  .||.
T Consensus       187 ~~~~~~~~~~~h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~--~v~~~~~--~~~~l~~~~--~dg~  260 (445)
T 2ovr_B          187 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVA--AVRCVQY--DGRRVVSGA--YDFM  260 (445)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSS--CEEEEEE--CSSCEEEEE--TTSC
T ss_pred             CcCcEEEEECCCCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcc--cEEEEEE--CCCEEEEEc--CCCE
Confidence            9999988876 4558999999998888887 88999999999999888876554  4556666  455788777  5899


Q ss_pred             EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCccc
Q 019349          161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  240 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~  240 (342)
                      |++||+++++++..+.+|..+|.+++|  ++++|++|+.||+ |++||+++++.+..+..+  ...+.+++++  +.   
T Consensus       261 i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~--~~~v~~~~~~--~~---  330 (445)
T 2ovr_B          261 VKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTS-IRVWDVETGNCIHTLTGH--QSLTSGMELK--DN---  330 (445)
T ss_dssp             EEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSC-EEEEETTTCCEEEEECCC--CSCEEEEEEE--TT---
T ss_pred             EEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCe-EEEEECCCCCEEEEEcCC--cccEEEEEEe--CC---
Confidence            999999999999999999999999999  7899999999998 589999999998888643  4457777764  56   


Q ss_pred             EEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          241 ILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       241 ~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      +|++++.||+|++||+++.+........                  ..+...+..+.+.  ++.|++++.||.|++|++.
T Consensus       331 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~  390 (445)
T 2ovr_B          331 ILVSGNADSTVKIWDIKTGQCLQTLQGP------------------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLK  390 (445)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECST------------------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEccC------------------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECC
Confidence            8999999999999999876543211100                  0011111122222  3689999999999999865


Q ss_pred             c
Q 019349          321 I  321 (342)
Q Consensus       321 ~  321 (342)
                      .
T Consensus       391 ~  391 (445)
T 2ovr_B          391 T  391 (445)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.9e-32  Score=247.69  Aligned_cols=282  Identities=11%  Similarity=0.144  Sum_probs=208.5

Q ss_pred             CCCeEEEEEcCCCC-EEEEE----------cCCc-EEEEeCCCCc---EEE-EEeeCCEEEEEEcCCCCeEEEEcCCCCC
Q 019349            7 SYPVFFVSFNQDNS-GFALS----------TKDG-FKIFDSSTGR---LCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQP   70 (342)
Q Consensus         7 ~~~V~~l~fs~d~~-~la~g----------~~~g-~~v~d~~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~   70 (342)
                      ..+|.+++|+|+++ +|++|          +.++ +++||+.+++   .+. ..+...+..+.+.++...++..+.    
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~----   87 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALD----   87 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEES----
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEcc----
Confidence            34688999999997 88988          6666 6999998774   221 124467888888888888877664    


Q ss_pred             CCCCCeEEEEECCC----CcEEEEEe-cCCceEEEEEcCC---eEEEEE-CCeEEEEECCCCc------eeeEE-eCCCC
Q 019349           71 SLSPRRLCLFNTTT----GTALRELN-FLTSILAVRLNKK---RLVIVL-REKTYIYDANTLA------ILDTI-DTVPN  134 (342)
Q Consensus        71 ~~~d~~i~iwd~~~----~~~~~~~~-~~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~~~------~~~~~-~~~~~  134 (342)
                         |+.|++||+.+    .+.+..+. +...|.+++|+++   .++.++ |+.|++||+.+++      ....+ ....+
T Consensus        88 ---dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  164 (416)
T 2pm9_A           88 ---NGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSS  164 (416)
T ss_dssp             ---SSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCS
T ss_pred             ---CCeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCC
Confidence               89999999987    34666654 4568999999875   344444 7899999998875      32222 11223


Q ss_pred             CceEEEEeeCCC-ccEEEEeCCCCccEEEEEEccCCceeEEEecc------cCCeeEEEECCCC-CEEEEEeCCC---cE
Q 019349          135 LKGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHSHCEIDAH------QAPLAAIVLSSNG-MYIATASEQG---TI  203 (342)
Q Consensus       135 ~~~~~~~~~~~~-~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h------~~~v~~i~~s~dg-~~lat~s~dg---~~  203 (342)
                      ...+.+++++|+ +.++++++  .+|.|++||+++++.+..+..|      ..+|++++|+|++ .+|++++.|+   . 
T Consensus       165 ~~~v~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~-  241 (416)
T 2pm9_A          165 VDEVISLAWNQSLAHVFASAG--SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS-  241 (416)
T ss_dssp             SCCCCEEEECSSCTTEEEEES--SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC-
T ss_pred             CCCeeEEEeCCCCCcEEEEEc--CCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce-
Confidence            345667777777 67888877  5899999999999998888876      7899999999997 6999999998   7 


Q ss_pred             EEEEEcCCC-eeEEEeccCcCceeEEEEEEec-CCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccc
Q 019349          204 IRVFLVSEA-TKSYSFRRGTYPSTIFSLSFGQ-SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVN  281 (342)
Q Consensus       204 irlwd~~~~-~~~~~~~~~~~~~~v~~l~fs~-d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (342)
                      |++||++++ +.+..+.. .+...|.+++|+| ++.   +|++++.||+|++||+++.+....       +..+......
T Consensus       242 i~~~d~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~---~l~s~~~dg~v~~wd~~~~~~~~~-------~~~~~~~v~~  310 (416)
T 2pm9_A          242 ILIWDLRNANTPLQTLNQ-GHQKGILSLDWCHQDEH---LLLSSGRDNTVLLWNPESAEQLSQ-------FPARGNWCFK  310 (416)
T ss_dssp             CCEEETTSTTSCSBCCCS-CCSSCEEEEEECSSCSS---CEEEEESSSEEEEECSSSCCEEEE-------EECSSSCCCC
T ss_pred             EEEEeCCCCCCCcEEeec-CccCceeEEEeCCCCCC---eEEEEeCCCCEEEeeCCCCcccee-------ecCCCCceEE
Confidence            589999987 45555431 2355699999999 888   999999999999999987654321       1111111112


Q ss_pred             ccccccccceeeeccCCCccc-cEEEEEEeCCcEEEEEEecCC
Q 019349          282 EVLDPADHHVLRNAFPAGVKR-ASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~dg~v~~~~~~~~~  323 (342)
                      ..|+|              ++ ..|++++.||.|++|++....
T Consensus       311 ~~~s~--------------~~~~~l~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          311 TKFAP--------------EAPDLFACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             EEECT--------------TCTTEEEECCSSSEEEEEESCCCC
T ss_pred             EEECC--------------CCCCEEEEEecCCcEEEEEccCCC
Confidence            23444              33 689999999999999986544

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.98  E-value=9.9e-30  Score=223.97  Aligned_cols=244  Identities=9%  Similarity=0.085  Sum_probs=178.1

Q ss_pred             EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC--cEEEEEe-cCCceEEEEEcC----CeEEEEE-CCeE
Q 019349           44 RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG--TALRELN-FLTSILAVRLNK----KRLVIVL-REKT  115 (342)
Q Consensus        44 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~--~~~~~~~-~~~~v~~i~~~~----~~~~~~~-d~~i  115 (342)
                      .|.+.+..+.+.++++.++..+.       |++|+|||+.++  +.+..+. +...|.+++|++    +.++.++ |++|
T Consensus         7 ~h~~~V~~~~~s~~g~~las~s~-------D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v   79 (297)
T 2pm7_B            7 AHNEMIHDAVMDYYGKRMATCSS-------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   79 (297)
T ss_dssp             SCSSCEEEEEECTTSSEEEEEET-------TSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEE
T ss_pred             CCcCceEEEEECCCCCEEEEEeC-------CCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEE
Confidence            35567778888888888887764       899999999743  5566665 456899999964    3444555 8999


Q ss_pred             EEEECCCCc--eeeEEeCCCCCceEEEEeeCCC--ccEEEEeCCCCccEEEEEEccCCc--eeEEEecccCCeeEEEECC
Q 019349          116 YIYDANTLA--ILDTIDTVPNLKGLCAFSPSLN--ACFLAVPASTTKGSVLVYNVMELH--SHCEIDAHQAPLAAIVLSS  189 (342)
Q Consensus       116 ~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~  189 (342)
                      ++||+.+++  .+..+..+..  .+.+++++|+  +.+|++++  .||.|++||+++..  ....+.+|...|++++|+|
T Consensus        80 ~iWd~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~g~~l~s~s--~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p  155 (297)
T 2pm7_B           80 MIWKEENGRWSQIAVHAVHSA--SVNSVQWAPHEYGPMLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAP  155 (297)
T ss_dssp             EEEEBSSSCBCCCEEECCCSS--CEEEEEECCGGGCSEEEEEE--TTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECC
T ss_pred             EEEEcCCCceEEEEEeecCCC--ceeEEEeCcCCCCcEEEEEE--CCCcEEEEEecCCCceeeeeeecccCccceEeecC
Confidence            999998774  3444544433  4666666665  67888887  68999999998763  2456789999999999999


Q ss_pred             C-------------CCEEEEEeCCCcEEEEEEcCCCe----eEEEeccCcCceeEEEEEEecCC---CcccEEEEEeCCC
Q 019349          190 N-------------GMYIATASEQGTIIRVFLVSEAT----KSYSFRRGTYPSTIFSLSFGQSM---QFQDILVATSSSG  249 (342)
Q Consensus       190 d-------------g~~lat~s~dg~~irlwd~~~~~----~~~~~~~~~~~~~v~~l~fs~d~---~~~~~l~~~s~dg  249 (342)
                      +             +++||+|+.|++ ||+||+++++    ....+..  |...|.+++|+|++   .   +||+++.|+
T Consensus       156 ~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lwd~~~~~~~~~~~~~l~~--H~~~V~~v~~sp~~~~~~---~las~s~D~  229 (297)
T 2pm7_B          156 ATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRS---YMASVSQDR  229 (297)
T ss_dssp             CC------------CCEEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSE---EEEEEETTS
T ss_pred             CcccccccCCCCCCcceEEEEcCCCc-EEEEEEcCCCceEEEEEEecC--CCCceEEEEECCCCCCce---EEEEEECCC
Confidence            7             579999999998 5899998765    4455543  35679999999995   6   999999999


Q ss_pred             cEEEEecCCCCCCCCCCCccccc--cccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          250 SLHVFSPGFAINQRRGGRTSSIL--GSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       250 ~i~vwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      +|+|||++........    ..+  ..+.              ..+..+.+.++++.|++++.||.|++|+...+
T Consensus       230 ~v~iWd~~~~~~~~~~----~~~~~~~~~--------------~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~  286 (297)
T 2pm7_B          230 TCIIWTQDNEQGPWKK----TLLKEEKFP--------------DVLWRASWSLSGNVLALSGGDNKVTLWKENLE  286 (297)
T ss_dssp             CEEEEEESSTTSCCEE----EESSSSCCS--------------SCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred             cEEEEEeCCCCCccce----eeeecccCC--------------CcEEEEEECCCCCEEEEEcCCCcEEEEEECCC
Confidence            9999999764321100    000  0111              11122333445588999999999999988654

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=9.5e-30  Score=226.61  Aligned_cols=243  Identities=16%  Similarity=0.196  Sum_probs=187.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc----EEEE--EeeCCEEEEEEcCC--CCeEEEEcCCCCCCCCC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR----LCYE--RAVGAFSIVEMLYS--SSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~----~~~~--~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d   74 (342)
                      ..|..+|++++|+|++++|++|+.++ +++||+.++.    ....  .+...+..+.+.+.  .+.++.++.       |
T Consensus         8 ~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~-------d   80 (351)
T 3f3f_A            8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY-------D   80 (351)
T ss_dssp             CCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET-------T
T ss_pred             cccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC-------C
Confidence            46889999999999999999999887 6999998762    3322  34466777777763  666666654       8


Q ss_pred             CeEEEEECCCC---------cEEEEEe-cCCceEEEEEcCC--e--EEEEE-CCeEEEEECCCCceeeEEeC--------
Q 019349           75 RRLCLFNTTTG---------TALRELN-FLTSILAVRLNKK--R--LVIVL-REKTYIYDANTLAILDTIDT--------  131 (342)
Q Consensus        75 ~~i~iwd~~~~---------~~~~~~~-~~~~v~~i~~~~~--~--~~~~~-d~~i~i~d~~~~~~~~~~~~--------  131 (342)
                      ++|++||+.++         +.+..+. +...|.+++|+++  .  ++.++ |+.|++||+.+++.+..+..        
T Consensus        81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~  160 (351)
T 3f3f_A           81 KTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLS  160 (351)
T ss_dssp             SCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCS
T ss_pred             CeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccc
Confidence            99999999887         4455554 4568999999876  3  44444 88999999988765433320        


Q ss_pred             ---CCCCceEEEEeeCCC---ccEEEEeCCCCccEEEEEEccCCce--eEEEecccCCeeEEEECCCC----CEEEEEeC
Q 019349          132 ---VPNLKGLCAFSPSLN---ACFLAVPASTTKGSVLVYNVMELHS--HCEIDAHQAPLAAIVLSSNG----MYIATASE  199 (342)
Q Consensus       132 ---~~~~~~~~~~~~~~~---~~~l~~~~~~~~g~i~iwd~~~~~~--~~~~~~h~~~v~~i~~s~dg----~~lat~s~  199 (342)
                         ..+...+.+++++|+   +..+++++  .++.+.+|+...++.  +..+.+|..+|++++|+|++    ++|++|+.
T Consensus       161 ~~~~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~  238 (351)
T 3f3f_A          161 IPPANHLQSDFCLSWCPSRFSPEKLAVSA--LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCK  238 (351)
T ss_dssp             CCCSSCSCCCEEEEECCCSSSCCEEEEEE--TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEET
T ss_pred             cccCCcccceeEEEeccCCCCCcEEEEec--CCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcC
Confidence               122345667777775   77888887  578898888777764  67788999999999999998    89999999


Q ss_pred             CCcEEEEEEcCCC----------------------------------------------eeEEEeccCcCceeEEEEEEe
Q 019349          200 QGTIIRVFLVSEA----------------------------------------------TKSYSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       200 dg~~irlwd~~~~----------------------------------------------~~~~~~~~~~~~~~v~~l~fs  233 (342)
                      ||+ |++||++++                                              +.+..+..  +...|++++|+
T Consensus       239 dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~~~~s  315 (351)
T 3f3f_A          239 DGR-IRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDD--HNGEVWSVSWN  315 (351)
T ss_dssp             TSC-EEEEEEEECC---------------------------------------CCSEEEEEEEEECT--TSSCEEEEEEC
T ss_pred             CCe-EEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEec--ccccEEEEEEc
Confidence            998 589999875                                              44455542  34569999999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      |+++   +|++++.||+|+||+++.+..
T Consensus       316 ~~~~---~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          316 LTGT---ILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             SSSC---CEEEEETTSCEEEEEECTTSC
T ss_pred             CCCC---EEEEecCCCcEEEEecCcCcc
Confidence            9999   999999999999999987654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.98  E-value=1.1e-29  Score=252.67  Aligned_cols=281  Identities=12%  Similarity=0.122  Sum_probs=219.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      +.+...|.+++|+|++.+|++|+.+| +++||+.+++.....  +...+..+.+.++++.+++++.       |+.|++|
T Consensus        10 ~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------dg~i~vw   82 (814)
T 3mkq_A           10 SNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSD-------DFRIRVF   82 (814)
T ss_dssp             EEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEET-------TSEEEEE
T ss_pred             ecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeC-------CCeEEEE
Confidence            35788999999999999999998887 699999998766544  4467888888888888887764       8999999


Q ss_pred             ECCCCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCC-ceeeEEeCCCCCceEEEEeeCC-CccEEEEeC
Q 019349           81 NTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTL-AILDTIDTVPNLKGLCAFSPSL-NACFLAVPA  154 (342)
Q Consensus        81 d~~~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~  154 (342)
                      |+.+++.+..+. +...|.+++|+++.  +++++ |+.|++||+.++ .....+..+..  .+.+++++| ++..+++++
T Consensus        83 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~--~v~~~~~~p~~~~~l~~~~  160 (814)
T 3mkq_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEH--FVMCVAFNPKDPSTFASGC  160 (814)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSS--CEEEEEEETTEEEEEEEEE
T ss_pred             ECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCC--cEEEEEEEcCCCCEEEEEe
Confidence            999999998887 55689999999876  44444 789999999887 55666665544  466777777 677888887


Q ss_pred             CCCccEEEEEEccCCceeEEEeccc-CCeeEEEECC--CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEE
Q 019349          155 STTKGSVLVYNVMELHSHCEIDAHQ-APLAAIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  231 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~~~h~-~~v~~i~~s~--dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~  231 (342)
                        .||.|++||+.+++....+..|. .++.+++|+|  ++.+|++++.||+ |++||+.+++.+..+..+  ...|.+++
T Consensus       161 --~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~--~~~v~~~~  235 (814)
T 3mkq_A          161 --LDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLT-IKIWDYQTKSCVATLEGH--MSNVSFAV  235 (814)
T ss_dssp             --TTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSE-EEEEETTTTEEEEEEECC--SSCEEEEE
T ss_pred             --CCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEcCC--CCCEEEEE
Confidence              68999999999888877777655 8999999999  9999999999997 589999999988888643  45699999


Q ss_pred             EecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeC
Q 019349          232 FGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN  311 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  311 (342)
                      |+|++.   +|++++.||+|++||+.+.......       ...........|+|.+.             ..+++.+.|
T Consensus       236 ~~~~~~---~l~~~~~dg~v~vwd~~~~~~~~~~-------~~~~~~v~~~~~~~~~~-------------~~~~~~~~~  292 (814)
T 3mkq_A          236 FHPTLP---IIISGSEDGTLKIWNSSTYKVEKTL-------NVGLERSWCIATHPTGR-------------KNYIASGFD  292 (814)
T ss_dssp             ECSSSS---EEEEEETTSCEEEEETTTCSEEEEE-------CCSSSSEEEEEECTTCG-------------GGEEEEEET
T ss_pred             EcCCCC---EEEEEeCCCeEEEEECCCCcEEEEe-------ecCCCcEEEEEEccCCC-------------ceEEEEEeC
Confidence            999999   9999999999999999876542211       11111111223444331             235777778


Q ss_pred             CcEEEEEEec
Q 019349          312 GYFVEYIFSI  321 (342)
Q Consensus       312 g~v~~~~~~~  321 (342)
                      +.+.+|.+..
T Consensus       293 ~~~~~~~~~~  302 (814)
T 3mkq_A          293 NGFTVLSLGN  302 (814)
T ss_dssp             TEEEEEECSC
T ss_pred             CCEEEEEcCC
Confidence            8888887654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.98  E-value=5.1e-30  Score=233.95  Aligned_cols=241  Identities=14%  Similarity=0.136  Sum_probs=194.8

Q ss_pred             CCCCCeEEEEEcCC----C---CEEEEEcCCc-EEEEeCCCCcE-----EEEE--e-----eCCEEEEEEc----CCCCe
Q 019349            5 SSSYPVFFVSFNQD----N---SGFALSTKDG-FKIFDSSTGRL-----CYER--A-----VGAFSIVEML----YSSSL   60 (342)
Q Consensus         5 ~~~~~V~~l~fs~d----~---~~la~g~~~g-~~v~d~~~~~~-----~~~~--~-----~~~~~~~~~~----~~~~~   60 (342)
                      .+..+|.+++|+|+    +   ++|++|+.++ +++||+.+++.     ....  +     ...+..+.+.    ++.+.
T Consensus        60 ~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  139 (397)
T 1sq9_A           60 VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSH  139 (397)
T ss_dssp             CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CE
T ss_pred             cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCce
Confidence            46789999999999    9   9999988776 69999987763     3333  2     2567778888    77777


Q ss_pred             -EEEEcCCCCCCCCCCeEEEEECCC------CcEEE-----EEe--------cCCceEEEEEcCCeEEEEE---CCeEEE
Q 019349           61 -LAIVGAGEQPSLSPRRLCLFNTTT------GTALR-----ELN--------FLTSILAVRLNKKRLVIVL---REKTYI  117 (342)
Q Consensus        61 -~~~~~~g~~~~~~d~~i~iwd~~~------~~~~~-----~~~--------~~~~v~~i~~~~~~~~~~~---d~~i~i  117 (342)
                       +++++.       ++.|++||+.+      ++.+.     .+.        +...|.+++++++. .++.   |+.|++
T Consensus       140 ~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i  211 (397)
T 1sq9_A          140 RLVATDV-------KGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQI  211 (397)
T ss_dssp             EEEEEET-------TSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEE
T ss_pred             EEEEEeC-------CCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEE
Confidence             666553       89999999988      66554     553        35689999999887 4433   789999


Q ss_pred             EECCCCceeeEEeC---C-CCCceEEEEeeCCCccEEEEeCCCCc---cEEEEEEccCCceeEEEec-------------
Q 019349          118 YDANTLAILDTIDT---V-PNLKGLCAFSPSLNACFLAVPASTTK---GSVLVYNVMELHSHCEIDA-------------  177 (342)
Q Consensus       118 ~d~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~~~~~~~---g~i~iwd~~~~~~~~~~~~-------------  177 (342)
                      ||+++++.+..+..   + .....+.+++++|++.++++++  .+   |.|++||+.+++.+..+.+             
T Consensus       212 ~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~--~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  289 (397)
T 1sq9_A          212 SELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH--DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFA  289 (397)
T ss_dssp             EETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE--EETTEEEEEEEETTTCCEEEEECBC--------CCBS
T ss_pred             EECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe--cCCCCceEEEEECCCCcccceeccCcccccccccccc
Confidence            99999998888876   4 0134577888888888999887  58   9999999999999999998             


Q ss_pred             ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec------cC-------------cCceeEEEEEEecCC--
Q 019349          178 HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR------RG-------------TYPSTIFSLSFGQSM--  236 (342)
Q Consensus       178 h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~------~~-------------~~~~~v~~l~fs~d~--  236 (342)
                      |..+|.+++|+|++++|++++.||. |++||+++++.+..+.      .+             .+...|.+++|+|++  
T Consensus       290 ~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~  368 (397)
T 1sq9_A          290 HSSWVMSLSFNDSGETLCSAGWDGK-LRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWR  368 (397)
T ss_dssp             BSSCEEEEEECSSSSEEEEEETTSE-EEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTS
T ss_pred             cCCcEEEEEECCCCCEEEEEeCCCe-EEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccc
Confidence            9999999999999999999999997 5899999999998886      22             014569999999998  


Q ss_pred             --------CcccEEEEEeCCCcEEEEecCCC
Q 019349          237 --------QFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       237 --------~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                              +   +|++++.||.|++|+++++
T Consensus       369 ~~~~~~~~~---~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          369 SGMGADLNE---SLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             BSTTCTTSC---EEEEEETTTEEEEEEEEC-
T ss_pred             ccccccccc---eEEEecCCCcEEEEEcCCC
Confidence                    7   8999999999999998764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.98  E-value=8.5e-29  Score=230.94  Aligned_cols=237  Identities=11%  Similarity=0.150  Sum_probs=191.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCC--CCeEEEEcCCCCCCCCCCeEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYS--SSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      ..+..+|.+++|+|++ +|++|+.++ +++||+.+++.+...  +...+..+.+.+.  .+.++.++       .|++|+
T Consensus       159 ~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s-------~d~~i~  230 (464)
T 3v7d_B          159 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS-------RDNTLH  230 (464)
T ss_dssp             CCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEE-------TTSCEE
T ss_pred             eCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEc-------CCCcEE
Confidence            4688999999999998 788887776 799999999776554  4466777777643  34454444       489999


Q ss_pred             EEECCCCcEE-----------------------EEEe-cCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCC
Q 019349           79 LFNTTTGTAL-----------------------RELN-FLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVP  133 (342)
Q Consensus        79 iwd~~~~~~~-----------------------~~~~-~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~  133 (342)
                      +||+.+++..                       .... +...+.++..+++.+++++ |+.|++||+.+++.+..+..+.
T Consensus       231 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  310 (464)
T 3v7d_B          231 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  310 (464)
T ss_dssp             EEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            9999877633                       2222 3447888888888888887 8899999999999988886554


Q ss_pred             CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe
Q 019349          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  213 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~  213 (342)
                      .  .+.++++++++..+++++  .||.|++||+.+++++..+.+|..+|.+++|+  +++|++|+.||+ |++||+.+++
T Consensus       311 ~--~v~~~~~~~~~~~l~sg~--~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~-v~vwd~~~~~  383 (464)
T 3v7d_B          311 D--RIYSTIYDHERKRCISAS--MDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGS-IRGWDANDYS  383 (464)
T ss_dssp             S--CEEEEEEETTTTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC--SSEEEEEETTSE-EEEEETTTCC
T ss_pred             C--CEEEEEEcCCCCEEEEEe--CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc--CCEEEEEeCCCc-EEEEECCCCc
Confidence            4  577777788888999888  68999999999999999999999999999997  589999999997 5899999988


Q ss_pred             eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349          214 KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~  262 (342)
                      ....+.   +...+..++|+|++.   +|++++ ||+|++||+++++..
T Consensus       384 ~~~~~~---~~~~~~~~~~~~~~~---~l~~~~-dg~i~iwd~~~g~~~  425 (464)
T 3v7d_B          384 RKFSYH---HTNLSAITTFYVSDN---ILVSGS-ENQFNIYNLRSGKLV  425 (464)
T ss_dssp             EEEEEE---CTTCCCEEEEEECSS---EEEEEE-TTEEEEEETTTCCEE
T ss_pred             eeeeec---CCCCccEEEEEeCCC---EEEEec-CCeEEEEECCCCcEE
Confidence            766653   233467789999999   899888 899999999887653

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.1e-29  Score=251.02  Aligned_cols=238  Identities=11%  Similarity=0.132  Sum_probs=182.1

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE-eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      .+...|++++|+|++++||+|+.++ ++||+....+..... +...+..+.+.+ +++++.++       .|++|++||+
T Consensus        15 gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~~l~fsp-g~~L~S~s-------~D~~v~lWd~   86 (902)
T 2oaj_A           15 GMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIKEMRFVK-GIYLVVIN-------AKDTVYVLSL   86 (902)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEEEEEEET-TTEEEEEE-------TTCEEEEEET
T ss_pred             CCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEEEEEEcC-CCEEEEEE-------CcCeEEEEEC
Confidence            4678999999999999999999887 699999887765543 335677788877 66566655       3899999999


Q ss_pred             CCCcEEEEEecCCceEEEEEcCCeE--EEEE-CCeEEEEECCCCceee-EE--------eCCCCCceEEEEeeCCC-ccE
Q 019349           83 TTGTALRELNFLTSILAVRLNKKRL--VIVL-REKTYIYDANTLAILD-TI--------DTVPNLKGLCAFSPSLN-ACF  149 (342)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~-d~~i~i~d~~~~~~~~-~~--------~~~~~~~~~~~~~~~~~-~~~  149 (342)
                      .+++++..+.++..|.+++|+++..  +++. |+.|++||+.++++.. .+        ....+...+.+++++|+ ...
T Consensus        87 ~~~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~  166 (902)
T 2oaj_A           87 YSQKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIGT  166 (902)
T ss_dssp             TTCSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEEE
T ss_pred             CCCcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCCE
Confidence            9999999998888999999988754  3344 8899999999886531 11        01223345667777775 356


Q ss_pred             EEEeCCCCccEEEEEEccCCceeEEEecc------------------cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 019349          150 LAVPASTTKGSVLVYNVMELHSHCEIDAH------------------QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~h------------------~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~  211 (342)
                      +++++  .||.| +||+++++++..+..|                  ...|++++|+|||++||+|+.||+ |++||+++
T Consensus       167 l~~g~--~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~-i~lWd~~~  242 (902)
T 2oaj_A          167 VLISY--EYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNS-LVFWDANS  242 (902)
T ss_dssp             EEEEC--SSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCC-EEEEETTT
T ss_pred             EEEEe--CCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCe-EEEEECCC
Confidence            66665  68999 9999999988888765                  578999999999999999999998 58999999


Q ss_pred             CeeEEE--ecc---C-----------cCceeEEEEEEe----cCCCcccEEEEEeCC-----CcEEEEec
Q 019349          212 ATKSYS--FRR---G-----------TYPSTIFSLSFG----QSMQFQDILVATSSS-----GSLHVFSP  256 (342)
Q Consensus       212 ~~~~~~--~~~---~-----------~~~~~v~~l~fs----~d~~~~~~l~~~s~d-----g~i~vwd~  256 (342)
                      ++.+..  +..   +           .+...|.+++|+    ||+.  .+|++|+.|     .++++|++
T Consensus       243 g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~--~ll~sg~~~~~~~~~~v~~~~~  310 (902)
T 2oaj_A          243 GHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYT--SLLISHKSISRGDNQSLTMIDL  310 (902)
T ss_dssp             CCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEE--EEEEEEECSTTSSCCCEEEEEE
T ss_pred             CcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCC--EEEEeCCCCCCCCCceEEEEec
Confidence            987654  210   1           013369999996    4432  167777665     37888885

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.97  E-value=4.6e-29  Score=230.29  Aligned_cols=243  Identities=12%  Similarity=0.125  Sum_probs=186.4

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      .+...|++|+|+|||++||+|+.|+ +++||+.+++.+.....+...+..+.+++..++..+.       |+.+++||..
T Consensus       145 ~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~-------d~~i~~~d~~  217 (420)
T 4gga_A          145 QPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSR-------SGHIHHHDVR  217 (420)
T ss_dssp             STTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEET-------TSEEEEEETT
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeC-------CCceeEeeec
Confidence            5667899999999999999999887 6999999998877766555555556667777666554       8999999987


Q ss_pred             CCc-EEEEEe-cCCceEEEEEcCCeEEEE--E-CCeEEEEECCCCce----eeEEeCCCCCceEEEEeeCCC-ccEEEEe
Q 019349           84 TGT-ALRELN-FLTSILAVRLNKKRLVIV--L-REKTYIYDANTLAI----LDTIDTVPNLKGLCAFSPSLN-ACFLAVP  153 (342)
Q Consensus        84 ~~~-~~~~~~-~~~~v~~i~~~~~~~~~~--~-d~~i~i~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~l~~~  153 (342)
                      ... .+..+. +...+..+.+.++...++  . |+.+++|+..+++.    +.....+..  .+.++++.|. ...++++
T Consensus       218 ~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~--~V~~~~~~p~~~~~la~~  295 (420)
T 4gga_A          218 VAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQG--AVKAVAWCPWQSNVLATG  295 (420)
T ss_dssp             SSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSS--CEEEEEECTTCTTEEEEE
T ss_pred             ccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCC--ceeeeeeCCCcccEEEEE
Confidence            654 444554 455889999987654433  3 88999999987642    334433333  4555555553 3355544


Q ss_pred             CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEE
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  231 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~  231 (342)
                      +...|++|++||+.++++...+..| ..+.++.|+|+++.|++++  .||+ |+|||+.+++++.++..  |...|++|+
T Consensus       296 ~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~~~~~lv~~sg~~d~~-I~iwd~~~~~~v~~l~g--H~~~V~~l~  371 (420)
T 4gga_A          296 GGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVLSLT  371 (420)
T ss_dssp             ECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEEEEE
T ss_pred             eecCCCEEEEEeCCccccceeeccc-cceeeeeecCCCCeEEEEEecCCCE-EEEEECCCCcEEEEEcC--CCCCEEEEE
Confidence            3226999999999999998888765 5688999999999998876  7888 58999999999999964  356799999


Q ss_pred             EecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          232 FGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      |+||++   +|++|+.|++|+|||+....+.+
T Consensus       372 ~spdg~---~l~S~s~D~tvriWdv~~~~~~~  400 (420)
T 4gga_A          372 MSPDGA---TVASAAADETLRLWRCFELDPAR  400 (420)
T ss_dssp             ECTTSS---CEEEEETTTEEEEECCSCSSCC-
T ss_pred             EcCCCC---EEEEEecCCeEEEEECCCCCccc
Confidence            999999   99999999999999997665443

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.97  E-value=5.3e-30  Score=230.62  Aligned_cols=238  Identities=13%  Similarity=0.149  Sum_probs=187.2

Q ss_pred             CCCCCeEEEEEcCC----CCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcC-CCCeEEEEcCCCCCCCCCCe
Q 019349            5 SSSYPVFFVSFNQD----NSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLY-SSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         5 ~~~~~V~~l~fs~d----~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~   76 (342)
                      .+...|++++|+|+    +.+|++|+.++ +++||+.+++.+...  +...+..+.+.+ +.+.++.++.       |+.
T Consensus        67 ~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~-------dg~  139 (366)
T 3k26_A           67 DADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK-------DHA  139 (366)
T ss_dssp             CTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET-------TSC
T ss_pred             CCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC-------CCe
Confidence            36688999999999    67899998887 699999998876554  446777788877 6677766654       899


Q ss_pred             EEEEECCCCcEEEEE----ecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeC------------------
Q 019349           77 LCLFNTTTGTALREL----NFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDT------------------  131 (342)
Q Consensus        77 i~iwd~~~~~~~~~~----~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~------------------  131 (342)
                      |++||+++++.+..+    .+...|.+++|+++.  ++.++ |+.|++||+++++....+..                  
T Consensus       140 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (366)
T 3k26_A          140 LRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI  219 (366)
T ss_dssp             EEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred             EEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence            999999999988887    356699999998764  44444 88999999987654433221                  


Q ss_pred             --------CCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce--------------eEEEecccCCeeEEEECC
Q 019349          132 --------VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--------------HCEIDAHQAPLAAIVLSS  189 (342)
Q Consensus       132 --------~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~--------------~~~~~~h~~~v~~i~~s~  189 (342)
                              ..+...+.+++++  +.++++++  .+|.|++||+.+++.              +..+..|..+|++++|+|
T Consensus       220 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~--~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  295 (366)
T 3k26_A          220 HFPDFSTRDIHRNYVDCVRWL--GDLILSKS--CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM  295 (366)
T ss_dssp             CCCSEEECSSCSSCCCEEEEE--TTEEEEEC--SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE
T ss_pred             ccCccccccCCcceEEEEEEc--CCEEEEEe--cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcC
Confidence                    0122345555555  34888877  589999999987644              777889999999999999


Q ss_pred             C--CCEEEEEeCCCcEEEEEEcCCCee----EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          190 N--GMYIATASEQGTIIRVFLVSEATK----SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       190 d--g~~lat~s~dg~~irlwd~~~~~~----~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +  |++|++|+.||. |++||+.+++.    ...+..+.+...|.+++|+|+++   +|++++.||.|++||+.
T Consensus       296 ~~~~~~l~~~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          296 DFWQKMLALGNQVGK-LYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSS---ILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             CTTSSEEEEECTTSC-EEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSS---EEEEEETTSEEEEEEC-
T ss_pred             CCCCcEEEEEecCCc-EEEEECCCCCCccccceEEcccccCCceEEEEeCCCCC---eEEEEeCCCEEEEEEec
Confidence            9  999999999998 58999998753    34555443356799999999999   99999999999999985

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4.9e-29  Score=228.68  Aligned_cols=242  Identities=12%  Similarity=0.091  Sum_probs=186.1

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      +...|.+++|+|++++|++|+.++ +++||+.+++.+.....  ..+..+.+  +++.++..+.       |+.|++||+
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~-------dg~i~i~d~  203 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSR-------SGAIHHHDV  203 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEET-------TSEEEEEET
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcC-------CCCEEEEec
Confidence            678899999999999999998887 69999999887766544  44554444  6677766654       899999999


Q ss_pred             C-CCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc-cEEEEeCCC
Q 019349           83 T-TGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA-CFLAVPAST  156 (342)
Q Consensus        83 ~-~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~  156 (342)
                      + .+..+..+. +...|.+++++++.  +++++ |+.|++||+.+++.+..+..+..  .+.+++++|++ .++++++..
T Consensus       204 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~--~v~~~~~~p~~~~ll~~~~gs  281 (401)
T 4aez_A          204 RIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNA--AVKAVAWCPWQSNLLATGGGT  281 (401)
T ss_dssp             TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSS--CCCEEEECTTSTTEEEEECCT
T ss_pred             ccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcc--eEEEEEECCCCCCEEEEecCC
Confidence            8 455565554 45689999998874  44444 78999999999988888765544  45556666644 455554322


Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  234 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~  234 (342)
                      .||.|++||+.+++++..+. |...|.+++|+|+|++|++++  .||. |++||+.+++.........+...|.+++|+|
T Consensus       282 ~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~g~~dg~-i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~  359 (401)
T 4aez_A          282 MDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMSTHGFPDNN-LSIWSYSSSGLTKQVDIPAHDTRVLYSALSP  359 (401)
T ss_dssp             TTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECTTTCE-EEEEEEETTEEEEEEEEECCSSCCCEEEECT
T ss_pred             CCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEEEeecCCCc-EEEEecCCccceeEEEecCCCCCEEEEEECC
Confidence            58999999999999888886 667899999999999999954  8887 5899999976655433223456799999999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          235 SMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       235 d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      +++   +|++++.||+|++|++..++...
T Consensus       360 dg~---~l~s~~~dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          360 DGR---ILSTAASDENLKFWRVYDGDHVK  385 (401)
T ss_dssp             TSS---EEEEECTTSEEEEEECCC-----
T ss_pred             CCC---EEEEEeCCCcEEEEECCCCcccc
Confidence            999   99999999999999998876543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.97  E-value=2.8e-29  Score=241.57  Aligned_cols=239  Identities=12%  Similarity=0.095  Sum_probs=193.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCC----cEEEEE--eeCC-EEEEEEcC--CCCeEEEEcCCCCCCCCCC
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTG----RLCYER--AVGA-FSIVEMLY--SSSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~----~~~~~~--~~~~-~~~~~~~~--~~~~~~~~~~g~~~~~~d~   75 (342)
                      .+...|.+++|+|||++|++++++.+++||+.++    +.....  +... +..+.+.+  +++++++.+.       |+
T Consensus        16 ~~~~~v~~~~~spdg~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~-------dg   88 (615)
T 1pgu_A           16 TQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDE-------SG   88 (615)
T ss_dssp             CCTTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEET-------TS
T ss_pred             CccCceeEEEECCCCCEEEEecCCeEEEEECCCCCCccccceEEecCCCceEEEEEECcCCCCCEEEEecC-------CC
Confidence            4677899999999999999999777899999987    655544  3456 88888888  8888877664       89


Q ss_pred             eEEEEECCCC--------cEEEEEe-cCCceEEEEEcCCeE--EEEE-C----CeEEEEECCCCceeeEEeCCCCCceEE
Q 019349           76 RLCLFNTTTG--------TALRELN-FLTSILAVRLNKKRL--VIVL-R----EKTYIYDANTLAILDTIDTVPNLKGLC  139 (342)
Q Consensus        76 ~i~iwd~~~~--------~~~~~~~-~~~~v~~i~~~~~~~--~~~~-d----~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (342)
                      +|++||+.++        +.+..+. +...|.+++|+++..  +++. +    +.|++||  .++.+..+..+.  ..+.
T Consensus        89 ~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~--~~v~  164 (615)
T 1pgu_A           89 KVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHS--QRIN  164 (615)
T ss_dssp             EEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCS--SCEE
T ss_pred             EEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCC--ccEE
Confidence            9999999755        4555555 456899999998753  3344 3    4777777  566666665544  4577


Q ss_pred             EEeeCCCcc-EEEEeCCCCccEEEEEEccCCceeEEEecccC---CeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCee
Q 019349          140 AFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSHCEIDAHQA---PLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATK  214 (342)
Q Consensus       140 ~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~---~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~~  214 (342)
                      +++++|++. .+++++  .||.|++||+.+++.+..+.+|..   +|++++|+|+ +++|++++.||. |++||+.+++.
T Consensus       165 ~~~~~~~~~~~l~~~~--~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~vwd~~~~~~  241 (615)
T 1pgu_A          165 ACHLKQSRPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEF  241 (615)
T ss_dssp             EEEECSSSSCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCE
T ss_pred             EEEECCCCCcEEEEEe--CCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCe-EEEEECCCCCE
Confidence            778888876 677776  689999999999999999999999   9999999999 999999999998 58999999999


Q ss_pred             EEEeccC--cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          215 SYSFRRG--TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       215 ~~~~~~~--~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +..+...  .+...|.+++|+ ++.   +|++++.|++|++||+++.+.
T Consensus       242 ~~~~~~~~~~~~~~v~~~~~~-~~~---~l~~~~~d~~i~~wd~~~~~~  286 (615)
T 1pgu_A          242 LKYIEDDQEPVQGGIFALSWL-DSQ---KFATVGADATIRVWDVTTSKC  286 (615)
T ss_dssp             EEECCBTTBCCCSCEEEEEES-SSS---EEEEEETTSEEEEEETTTTEE
T ss_pred             eEEecccccccCCceEEEEEc-CCC---EEEEEcCCCcEEEEECCCCcE
Confidence            8888321  235679999999 888   999999999999999987654

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.1e-29  Score=232.69  Aligned_cols=234  Identities=11%  Similarity=0.078  Sum_probs=186.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCc---EEEEEee--------------------------------------
Q 019349            8 YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR---LCYERAV--------------------------------------   46 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~---~~~~~~~--------------------------------------   46 (342)
                      .++.+++|+|||++|+++.++.+++||+.+++   .+.....                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSI   84 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC------------------------------------
T ss_pred             ccEEEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCccc
Confidence            57899999999998888888889999999887   4332221                                      


Q ss_pred             ------------------CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC--CCcEEEEE---ecCCceEEEEEc
Q 019349           47 ------------------GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT--TGTALREL---NFLTSILAVRLN  103 (342)
Q Consensus        47 ------------------~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~--~~~~~~~~---~~~~~v~~i~~~  103 (342)
                                        +.+..+.+.++++.++++++      .|++|++||+.  +++++..+   .+...|.+++|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~------~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s  158 (450)
T 2vdu_B           85 KRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACAD------SDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIA  158 (450)
T ss_dssp             ---------------CCCCCEEEEEECTTSSEEEEEEG------GGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEEC
T ss_pred             cccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEEC------CCCeEEEEECcCCCCceeeeeecccCCCCceEEEEc
Confidence                              13666777778888644443      48999999998  88887776   456789999999


Q ss_pred             CCe--EEEEE-CCeEEEEECCCCceee----EEeCCCCCceEEEEeeCCC---ccEEEEeCCCCccEEEEEEccCCceeE
Q 019349          104 KKR--LVIVL-REKTYIYDANTLAILD----TIDTVPNLKGLCAFSPSLN---ACFLAVPASTTKGSVLVYNVMELHSHC  173 (342)
Q Consensus       104 ~~~--~~~~~-d~~i~i~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~g~i~iwd~~~~~~~~  173 (342)
                      ++.  ++++. ++.+++|++.+++...    .+..+.  ..+.+++++|+   +.+|++++  .|+.|++||+.+++.+.
T Consensus       159 p~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~--~~v~~~~~sp~~~~~~~l~s~~--~d~~i~vwd~~~~~~~~  234 (450)
T 2vdu_B          159 EDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHV--SMLTDVHLIKDSDGHQFIITSD--RDEHIKISHYPQCFIVD  234 (450)
T ss_dssp             TTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECS--SCEEEEEEEECTTSCEEEEEEE--TTSCEEEEEESCTTCEE
T ss_pred             CCCCEEEEEeCCCcEEEEecCCcccccccceeeeccc--CceEEEEEcCCCCCCcEEEEEc--CCCcEEEEECCCCceee
Confidence            875  33444 7899999998876543    333333  35667777777   88888887  58999999999998887


Q ss_pred             E-EecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC-----------------------cCceeEEE
Q 019349          174 E-IDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-----------------------TYPSTIFS  229 (342)
Q Consensus       174 ~-~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~-----------------------~~~~~v~~  229 (342)
                      . +.+|..+|++++|+ +|++|++++.|++ |++||+.+++.+..+..+                       .....|.+
T Consensus       235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~-v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  312 (450)
T 2vdu_B          235 KWLFGHKHFVSSICCG-KDYLLLSAGGDDK-IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSK  312 (450)
T ss_dssp             EECCCCSSCEEEEEEC-STTEEEEEESSSE-EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEE
T ss_pred             eeecCCCCceEEEEEC-CCCEEEEEeCCCe-EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEE
Confidence            7 56899999999999 9999999999997 589999999988877532                       11234899


Q ss_pred             EEEecCCCcccEEEEEe-CCCcEEEEec
Q 019349          230 LSFGQSMQFQDILVATS-SSGSLHVFSP  256 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s-~dg~i~vwd~  256 (342)
                      ++|+|+++   +|++++ .|+.|+||++
T Consensus       313 i~~~~~~~---~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          313 IIKSKNLP---FVAFFVEATKCIIILEM  337 (450)
T ss_dssp             EEECSSSS---EEEEEETTCSEEEEEEE
T ss_pred             EEEeCCCC---EEEEEECCCCeEEEEEe
Confidence            99999999   899998 8999999999

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.97  E-value=1.3e-30  Score=270.64  Aligned_cols=276  Identities=14%  Similarity=0.127  Sum_probs=221.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      ...+|.+++|+|+++++++|+.+| +++||+.+++.....  +...+..+.+.++++.++.++.       |++|++||+
T Consensus       960 ~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~-------dg~i~vwd~ 1032 (1249)
T 3sfz_A          960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSE-------DSVIQVWNW 1032 (1249)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECSSSSCEEEECS-------SSBEEEEET
T ss_pred             ccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECCCCCEEEEEcC-------CCEEEEEEC
Confidence            356799999999999999999887 599999998766553  3456667788888888877664       899999999


Q ss_pred             CCCcEEEEEecCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349           83 TTGTALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (342)
Q Consensus        83 ~~~~~~~~~~~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~  160 (342)
                      .+++.+....+...|.++.++++..+++.  |+.|++||+.+++.+..+..+...  +.+++++|++.++++++  .||+
T Consensus      1033 ~~~~~~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~--v~~~~~s~d~~~l~s~s--~d~~ 1108 (1249)
T 3sfz_A         1033 QTGDYVFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGT--VLSCAISSDATKFSSTS--ADKT 1108 (1249)
T ss_dssp             TTTEEECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSC--CCCEEECSSSSSCEEEC--CSSC
T ss_pred             CCCceEEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCc--EEEEEECCCCCEEEEEc--CCCc
Confidence            99988866667779999999988766655  889999999999998888776554  55566677888899888  6899


Q ss_pred             EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc-------CcCceeEEEEEEe
Q 019349          161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-------GTYPSTIFSLSFG  233 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~-------~~~~~~v~~l~fs  233 (342)
                      |++||+.+++++..+.+|..+|++++|+|||++||+|+.||+ |++||+.+++.+..+..       ..+...|.+++|+
T Consensus      1109 v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs 1187 (1249)
T 3sfz_A         1109 AKIWSFDLLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGE-IRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFS 1187 (1249)
T ss_dssp             CCEECSSSSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSC-CCEEESSSSCCCCCCCCCC-------CCSCCCEEEEC
T ss_pred             EEEEECCCcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCE-EEEEECCCCceEEEeccccccccccccCceEEEEEEC
Confidence            999999999999999999999999999999999999999998 58999999987655411       1234569999999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCc
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY  313 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  313 (342)
                      ||++   +|++++  |+|++||+.++........       ....              +..+.+.+++..|++++.||.
T Consensus      1188 ~dg~---~l~s~~--g~v~vwd~~~g~~~~~~~~-------~~~~--------------i~~~~~s~dg~~l~~~~~dg~ 1241 (1249)
T 3sfz_A         1188 PDSK---TLVSAG--GYLKWWNVATGDSSQTFYT-------NGTN--------------LKKIHVSPDFRTYVTVDNLGI 1241 (1249)
T ss_dssp             TTSS---CEEEES--SSEEEBCSSSCBCCCCCCC-------SSCC--------------CCCCEECSSSCCEEEECTTCC
T ss_pred             CCCC---EEEECC--CeEEEEECCCCceeeeeec-------cCCc--------------ccEEEECCCCCEEEEecCCcE
Confidence            9999   888886  8999999988765432111       0001              112233445588999999999


Q ss_pred             EEEEEE
Q 019349          314 FVEYIF  319 (342)
Q Consensus       314 v~~~~~  319 (342)
                      +++|++
T Consensus      1242 v~vw~l 1247 (1249)
T 3sfz_A         1242 LYILQV 1247 (1249)
T ss_dssp             EEEECC
T ss_pred             EEEEee
Confidence            999976

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-30  Score=240.20  Aligned_cols=282  Identities=9%  Similarity=0.073  Sum_probs=201.0

Q ss_pred             EEcCCCCEEEEEcCCcEEEEeCCCCcEEEEE---eeCCEEEEEEcC-CCCeEEEEcCCCCCCCCCCeEEEEECCC---Cc
Q 019349           14 SFNQDNSGFALSTKDGFKIFDSSTGRLCYER---AVGAFSIVEMLY-SSSLLAIVGAGEQPSLSPRRLCLFNTTT---GT   86 (342)
Q Consensus        14 ~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~i~iwd~~~---~~   86 (342)
                      .|+|+++.+++++     .|+. +++++...   |.+.+..+.+.+ +++.++.++.       |++|++||+.+   +.
T Consensus        34 ~f~~~~~~~~~~~-----~w~~-~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~-------dg~v~vwd~~~~~~~~  100 (437)
T 3gre_A           34 EFGPIQEIVRSPN-----MGNL-RGKLIATLMENEPNSITSSAVSPGETPYLITGSD-------QGVIKIWNLKEIIVGE  100 (437)
T ss_dssp             GGCCCCCCCCCCC-----GGGC-CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEET-------TSEEEEEEHHHHHTTC
T ss_pred             hcCCccccccccc-----cccc-cceEEeeeccCCCCceEEEEECCCCCCEEEEecC-------CceEEEeECcccccCc
Confidence            5788888777655     4773 45555554   336788888888 7778777764       89999999876   33


Q ss_pred             ---EEEEEecCCceEEEEEcCCe--EEEEE-CCeEEEEECC---CCceeeEE--------eCCC--CCceEEEEe--eCC
Q 019349           87 ---ALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDAN---TLAILDTI--------DTVP--NLKGLCAFS--PSL  145 (342)
Q Consensus        87 ---~~~~~~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~---~~~~~~~~--------~~~~--~~~~~~~~~--~~~  145 (342)
                         ....+.+...|.+++|+++.  ++.++ |+.|++||+.   +++.+...        ....  ....+.++.  +++
T Consensus       101 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  180 (437)
T 3gre_A          101 VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNE  180 (437)
T ss_dssp             CCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECS
T ss_pred             ccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcC
Confidence               34556678899999998854  44445 8899999994   45444332        2211  223333333  667


Q ss_pred             CccEEEEeCCCCccEEEEEEccCCceeEEEec--ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349          146 NACFLAVPASTTKGSVLVYNVMELHSHCEIDA--HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~--h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~  223 (342)
                      ++.++++++  .||.|++||+++++++..+.+  |..+|++++|+|++++|++|+.||+ |++||+++++.+..+... +
T Consensus       181 ~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~-~  256 (437)
T 3gre_A          181 EKSLLVALT--NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGI-IDIWDIRFNVLIRSWSFG-D  256 (437)
T ss_dssp             SCEEEEEEE--TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSC-EEEEETTTTEEEEEEBCT-T
T ss_pred             CCCEEEEEe--CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCe-EEEEEcCCccEEEEEecC-C
Confidence            788998888  689999999999999999988  8999999999999999999999998 589999999998887533 3


Q ss_pred             ceeEEEEEEe----cCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccc-----------
Q 019349          224 PSTIFSLSFG----QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPAD-----------  288 (342)
Q Consensus       224 ~~~v~~l~fs----~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------  288 (342)
                      ...|.+++|+    |++.   +|++++.||+|++||+++.+.........       .......|.|.+           
T Consensus       257 ~~~v~~~~~~~~~s~~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~  326 (437)
T 3gre_A          257 HAPITHVEVCQFYGKNSV---IVVGGSSKTFLTIWNFVKGHCQYAFINSD-------EQPSMEHFLPIEKGLEELNFCGI  326 (437)
T ss_dssp             CEEEEEEEECTTTCTTEE---EEEEESTTEEEEEEETTTTEEEEEEESSS-------SCCCGGGGSCBCSSGGGCCCCCC
T ss_pred             CCceEEEEeccccCCCcc---EEEEEcCCCcEEEEEcCCCcEEEEEEcCC-------CCCccceecccccccccceeccc
Confidence            4579999554    5677   99999999999999998765433211110       000111222221           


Q ss_pred             -cceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349          289 -HHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       289 -~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                       +...+..+.+. +++.|++++.||.|++|++...+
T Consensus       327 ~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~  361 (437)
T 3gre_A          327 RSLNALSTISVS-NDKILLTDEATSSIVMFSLNELS  361 (437)
T ss_dssp             CSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGG
T ss_pred             ccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcc
Confidence             22223334444 44789999999999999876543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=9.3e-29  Score=222.44  Aligned_cols=242  Identities=10%  Similarity=0.067  Sum_probs=190.2

Q ss_pred             CCCCCCCeEEEEEcCC---CCEEEEEcCCc-EEEEeCCC-CcEE---EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349            3 NQSSSYPVFFVSFNQD---NSGFALSTKDG-FKIFDSST-GRLC---YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d---~~~la~g~~~g-~~v~d~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (342)
                      ...|...|++++|+|+   |++|++|+.++ +++||+.+ ++.+   +..+...+..+.+.++++.++.++.       |
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~-------d  107 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASC-------D  107 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEET-------T
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcC-------C
Confidence            3568899999999999   59999999887 69999987 4333   3345577888888888888887664       8


Q ss_pred             CeEEEEECCCCcEEEEEecCCceEEEEE--cCCeE--EEEE-CCeEEEEECCCCceeeEEeCCCC---------------
Q 019349           75 RRLCLFNTTTGTALRELNFLTSILAVRL--NKKRL--VIVL-REKTYIYDANTLAILDTIDTVPN---------------  134 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~~v~~i~~--~~~~~--~~~~-d~~i~i~d~~~~~~~~~~~~~~~---------------  134 (342)
                      +.|++||+.+++.+....+...|.++.|  +++..  +.++ |+.|++||+++++.+..+..+..               
T Consensus       108 g~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (368)
T 3mmy_A          108 KTAKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVAT  187 (368)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEE
T ss_pred             CcEEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEe
Confidence            9999999999998888888889999999  77753  3344 88999999998887777654321               


Q ss_pred             --------------------------CceEEEEeeCCCc--cEEEEeCCCCccEEEEEEccCC---ceeEEEecccC---
Q 019349          135 --------------------------LKGLCAFSPSLNA--CFLAVPASTTKGSVLVYNVMEL---HSHCEIDAHQA---  180 (342)
Q Consensus       135 --------------------------~~~~~~~~~~~~~--~~l~~~~~~~~g~i~iwd~~~~---~~~~~~~~h~~---  180 (342)
                                                .....++.+.+..  ..+++++  .+|.|++||+...   +.+..+.+|..   
T Consensus       188 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~  265 (368)
T 3mmy_A          188 AERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGS--IEGRVAIHYINPPNPAKDNFTFKCHRSNGT  265 (368)
T ss_dssp             GGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEE--TTSEEEEEESSCSCHHHHSEEEECSEEC--
T ss_pred             CCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEec--CCCcEEEEecCCCCccccceeeeeeecccc
Confidence                                      1122223332221  2266666  5899999999887   56777888876   


Q ss_pred             ---------CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcE
Q 019349          181 ---------PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL  251 (342)
Q Consensus       181 ---------~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i  251 (342)
                               +|++++|+|++++|++|+.||. |++||+.+++.+..+..  +...|.+++|+|+++   +|++++.|+..
T Consensus       266 ~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~--~~~~v~~~~~s~~g~---~l~~~s~d~~~  339 (368)
T 3mmy_A          266 NTSAPQDIYAVNGIAFHPVHGTLATVGSDGR-FSFWDKDARTKLKTSEQ--LDQPISACCFNHNGN---IFAYASSYDWS  339 (368)
T ss_dssp             --CCCEEECCEEEEEECTTTCCEEEEETTSC-EEEEETTTTEEEEECCC--CSSCEEEEEECTTSS---CEEEEECCCST
T ss_pred             cccccccccceEEEEEecCCCEEEEEccCCe-EEEEECCCCcEEEEecC--CCCCceEEEECCCCC---eEEEEeccccc
Confidence                     7999999999999999999998 58999999999988864  355799999999999   99999999877


Q ss_pred             EEEecCCC
Q 019349          252 HVFSPGFA  259 (342)
Q Consensus       252 ~vwd~~~~  259 (342)
                      +.|++-..
T Consensus       340 ~~~~~~~~  347 (368)
T 3mmy_A          340 KGHEFYNP  347 (368)
T ss_dssp             TCGGGCCT
T ss_pred             ccccccCC
Confidence            66665443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.97  E-value=9.3e-29  Score=242.44  Aligned_cols=238  Identities=15%  Similarity=0.179  Sum_probs=189.7

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..|...|.+++|+|++++|++|+.|+ ++|||+.+++.....  |...+..+.+.++++.++.++.       |++|++|
T Consensus       427 ~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~-------D~~i~iw  499 (694)
T 3dm0_A          427 TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR-------DRTIKLW  499 (694)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET-------TSCEEEE
T ss_pred             cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC-------CCEEEEE
Confidence            35788999999999999999999887 699999998765543  4567888888888888877764       8999999


Q ss_pred             ECCCCcEEEEE----ecCCceEEEEEcCCe----EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           81 NTTTGTALREL----NFLTSILAVRLNKKR----LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        81 d~~~~~~~~~~----~~~~~v~~i~~~~~~----~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      |..........    .+...|.+++|+++.    ++.++ |++|++||+++.++...+..|..  .+.+++++|++.+++
T Consensus       500 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~--~v~~v~~spdg~~l~  577 (694)
T 3dm0_A          500 NTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTG--YVSTVAVSPDGSLCA  577 (694)
T ss_dssp             CTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSEEE
T ss_pred             ECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEE
Confidence            98654333222    134479999998863    44444 88999999999988888876544  577788888899999


Q ss_pred             EeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC--------
Q 019349          152 VPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY--------  223 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~--------  223 (342)
                      +++  .||.|++||+.+++.+..+.. ...|.+++|+|++.+|++++.+ . |++||+++++.+..+.....        
T Consensus       578 sg~--~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l~~~~~~-~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~  652 (694)
T 3dm0_A          578 SGG--KDGVVLLWDLAEGKKLYSLEA-NSVIHALCFSPNRYWLCAATEH-G-IKIWDLESKSIVEDLKVDLKAEAEKADN  652 (694)
T ss_dssp             EEE--TTSBCEEEETTTTEEEECCBC-SSCEEEEEECSSSSEEEEEETT-E-EEEEETTTTEEEEEECCCCC--------
T ss_pred             EEe--CCCeEEEEECCCCceEEEecC-CCcEEEEEEcCCCcEEEEEcCC-C-EEEEECCCCCChhhhccccccccccccc
Confidence            988  689999999999998877764 4679999999999999888755 4 68999999998877642211        


Q ss_pred             ---------ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          224 ---------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       224 ---------~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                               ...+.+++||||++   +|++|+.||+|+||++..
T Consensus       653 ~~~~~~~~~~~~~~~l~~spdg~---~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          653 SGPAATKRKVIYCTSLNWSADGS---TLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             --------CCCCEEEEEECTTSS---EEEEEETTSEEEEEEC--
T ss_pred             cccccCCceeEEeeeEEEcCCCC---EEEEEcCCCeEEEEeccC
Confidence                     01278899999999   999999999999999863

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.4e-28  Score=247.12  Aligned_cols=300  Identities=11%  Similarity=0.049  Sum_probs=197.2

Q ss_pred             CCCCCCeEEEEEcCCC-CEEEEEcCCcEEEEeCCCCcEEEEEee--------------------CCEEEEEEcCCCCeEE
Q 019349            4 QSSSYPVFFVSFNQDN-SGFALSTKDGFKIFDSSTGRLCYERAV--------------------GAFSIVEMLYSSSLLA   62 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~-~~la~g~~~g~~v~d~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~   62 (342)
                      ..+..+|.+++|+|++ ..|++|++++..+||+.+++.+.....                    ..+..+.+.+++..++
T Consensus       148 ~~h~~~V~sl~~sp~~~~~l~~g~~dg~vlWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~la  227 (902)
T 2oaj_A          148 AARLSPIVSIQWNPRDIGTVLISYEYVTLTYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHII  227 (902)
T ss_dssp             SSCCCCCCEEEEETTEEEEEEEECSSCEEEEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEE
T ss_pred             ccCCCCeEEEEEccCCCCEEEEEeCCCcEEEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEE
Confidence            3577899999999964 678899888844999999876654332                    3477788888888887


Q ss_pred             EEcCCCCCCCCCCeEEEEECCCCcEEEEEec-------------------CCceEEEEEc----CC--eEEEEE--C---
Q 019349           63 IVGAGEQPSLSPRRLCLFNTTTGTALRELNF-------------------LTSILAVRLN----KK--RLVIVL--R---  112 (342)
Q Consensus        63 ~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~-------------------~~~v~~i~~~----~~--~~~~~~--d---  112 (342)
                      .++.       |++|++||+++++++....+                   ...|.+++|.    ++  .+++++  +   
T Consensus       228 sgs~-------Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~  300 (902)
T 2oaj_A          228 TIHE-------DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRG  300 (902)
T ss_dssp             EEET-------TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTS
T ss_pred             EEEC-------CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCC
Confidence            7764       89999999999988764211                   2268888883    33  223322  2   


Q ss_pred             --CeEEEEEC----------------------------------------------------------------------
Q 019349          113 --EKTYIYDA----------------------------------------------------------------------  120 (342)
Q Consensus       113 --~~i~i~d~----------------------------------------------------------------------  120 (342)
                        ..+.+|++                                                                      
T Consensus       301 ~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~  380 (902)
T 2oaj_A          301 DNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETML  380 (902)
T ss_dssp             SCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEE
T ss_pred             CCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEE
Confidence              14556553                                                                      


Q ss_pred             -CCCceeeE-------EeCCCCCce--------------------------------EEEEeeCCCccEEEEeCCCCccE
Q 019349          121 -NTLAILDT-------IDTVPNLKG--------------------------------LCAFSPSLNACFLAVPASTTKGS  160 (342)
Q Consensus       121 -~~~~~~~~-------~~~~~~~~~--------------------------------~~~~~~~~~~~~l~~~~~~~~g~  160 (342)
                       .++.....       +..+.....                                +..++++|++.+|++++  .||+
T Consensus       381 ~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs--~Dgt  458 (902)
T 2oaj_A          381 YPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGH--SNGS  458 (902)
T ss_dssp             TTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEE--TTSE
T ss_pred             CCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEec--CCCc
Confidence             22211000       000000000                                01123357788999888  6899


Q ss_pred             EEEEEccCCcee--EEE----e-----cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe----------------
Q 019349          161 VLVYNVMELHSH--CEI----D-----AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT----------------  213 (342)
Q Consensus       161 i~iwd~~~~~~~--~~~----~-----~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~----------------  213 (342)
                      |++||+.+++..  ..+    .     +|...|++|+|+|||++||+|+.||+ |+|||+.+++                
T Consensus       459 VrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~Dgt-V~lwd~~~~~~~~~~~~~~~~~~~~~  537 (902)
T 2oaj_A          459 VRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGD-VVLFKYEVNQFYSVENRPESGDLEMN  537 (902)
T ss_dssp             EEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSC-EEEEEEEECCC---------------
T ss_pred             EEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcE-EEEEEecCccccCccccCCCccccee
Confidence            999999877421  111    1     78999999999999999999999998 5899998663                


Q ss_pred             -----------------------------eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCC
Q 019349          214 -----------------------------KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRR  264 (342)
Q Consensus       214 -----------------------------~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~  264 (342)
                                                   ++..+..  +.+.|++|+|||||    +||+|+.|++|+|||++.+....+
T Consensus       538 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~--h~~~V~svafSpdG----~lAsgs~D~tv~lwd~~~~~~~~~  611 (902)
T 2oaj_A          538 FRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHA--NKGKTSAINNSNIG----FVGIAYAAGSLMLIDRRGPAIIYM  611 (902)
T ss_dssp             CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECC--CSCSEEEEEECBTS----EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             eeeccccCCccccccccccCCCCCCCccceeEEEEc--CCCcEEEEEecCCc----EEEEEeCCCcEEEEECCCCeEEEE
Confidence                                         2444433  45679999999999    699999999999999876543110


Q ss_pred             CCCccccccccccccccccccccccceeeeccCCC-----cc---ccEEEEEEeCCcEEEEEEecCCCCeeeeEEEee
Q 019349          265 GGRTSSILGSILPESVNEVLDPADHHVLRNAFPAG-----VK---RASVSVITYNGYFVEYIFSINNCCESTWTLDRE  334 (342)
Q Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~---~~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~~  334 (342)
                           ..+..+.          .+|...+..+.|.     ++   +..|++++.||+|++|++.+...++....+.+.
T Consensus       612 -----~~~~~~~----------~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~~~~~~~  674 (902)
T 2oaj_A          612 -----ENIREIS----------GAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFDVQLMDI  674 (902)
T ss_dssp             -----EEGGGTC----------SSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEEEEEEEE
T ss_pred             -----eehhHhc----------cccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEEEEecCc
Confidence                 0000000          0111112222223     33   479999999999999999776555544555443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.7e-29  Score=225.56  Aligned_cols=267  Identities=13%  Similarity=0.115  Sum_probs=187.1

Q ss_pred             EEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC---------
Q 019349           14 SFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT---------   83 (342)
Q Consensus        14 ~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~---------   83 (342)
                      ++.+|+.+|++|+.|+ +++||+.+++.+.....+.+..+.  +.+. ++..+       .|++|++|+..         
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~~~~v~~~~--~~~~-~~s~s-------~D~~i~~w~~~~~~~~~~~~  112 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTITTPNPRTGG--EHPA-IISRG-------PCNRLLLLYPGNQITILDSK  112 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEEEECCCTTC--CCCS-EEEEC-------STTEEEEEETTTEEEEEETT
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEecCCceeee--eCCc-eEEec-------CCCeEEEEEccCceEEeecC
Confidence            4456888899998888 599999998776655433332222  2333 33333       48999999654         


Q ss_pred             CCcEEEEEecC--CceEEEEEcC--Ce--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           84 TGTALRELNFL--TSILAVRLNK--KR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        84 ~~~~~~~~~~~--~~v~~i~~~~--~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      +++.+..+...  ..|.++++++  +.  ++.++ |++|++||+++++.+.....+ ....+.+++++|++.++++++  
T Consensus       113 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~-~~~~i~~~~~~pdg~~lasg~--  189 (343)
T 3lrv_A          113 TNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK-SDVEYSSGVLHKDSLLLALYS--  189 (343)
T ss_dssp             TCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC-SSCCCCEEEECTTSCEEEEEC--
T ss_pred             CcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC-CCCceEEEEECCCCCEEEEEc--
Confidence            55656555533  5799999988  54  33344 889999999999886655333 233467788888999999887  


Q ss_pred             CccEEEEEEccCCcee-EEEec-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc-CceeE--EEEE
Q 019349          157 TKGSVLVYNVMELHSH-CEIDA-HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-YPSTI--FSLS  231 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~-~~~~~-h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~-~~~~v--~~l~  231 (342)
                      .||.|++||+++++.+ ..+.. |..+|++++|+|+|.+|+++++ ++ |++||+++++.+..+.... +...+  .+++
T Consensus       190 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~-~~-v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (343)
T 3lrv_A          190 PDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD-QT-VVCFDLRKDVGTLAYPTYTIPEFKTGTVTYD  267 (343)
T ss_dssp             TTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES-SB-EEEEETTSSTTCBSSCCCBC-----CCEEEE
T ss_pred             CCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC-Ce-EEEEEcCCCCcceeecccccccccccceEEE
Confidence            6899999999999887 78888 9999999999999999999994 46 6899999987655443210 11123  4699


Q ss_pred             EecCCCcccEEEEEeC-CCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe
Q 019349          232 FGQSMQFQDILVATSS-SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY  310 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (342)
                      |+|+++   +|++++. |+.|+||+++...+.-      . .    .+.....|.+.           ..+...+++++.
T Consensus       268 ~~~~g~---~l~~~s~~d~~i~v~~~~~~~~~~------~-~----~~~~~~~~~~~-----------~~~~~~l~~~~~  322 (343)
T 3lrv_A          268 IDDSGK---NMIAYSNESNSLTIYKFDKKTKNW------T-K----DEESALCLQSD-----------TADFTDMDVVCG  322 (343)
T ss_dssp             ECTTSS---EEEEEETTTTEEEEEEECTTTCSE------E-E----EEEEECCC---------------CCCCEEEEEEE
T ss_pred             ECCCCC---EEEEecCCCCcEEEEEEcccccce------E-e----cCceeEecCcc-----------ccccceeEEEec
Confidence            999999   9999998 9999999987654311      0 0    00111123321           113478999999


Q ss_pred             CCcEEEEEEe
Q 019349          311 NGYFVEYIFS  320 (342)
Q Consensus       311 dg~v~~~~~~  320 (342)
                      ||.+.++-..
T Consensus       323 d~~~~~~~~~  332 (343)
T 3lrv_A          323 DGGIAAILKT  332 (343)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCceEEEEec
Confidence            9999988543

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.97  E-value=2.6e-29  Score=223.26  Aligned_cols=247  Identities=11%  Similarity=0.104  Sum_probs=175.6

Q ss_pred             EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE--EEEEe-cCCceEEEEEcC----CeEEEEE-CC
Q 019349           42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA--LRELN-FLTSILAVRLNK----KRLVIVL-RE  113 (342)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~--~~~~~-~~~~v~~i~~~~----~~~~~~~-d~  113 (342)
                      ...|.+.+..+.+.++++.++..+.       |++|++||+.+++.  +..+. +...|.+++|++    +.++.++ |+
T Consensus         9 ~~~H~~~V~~v~~s~~g~~lasgs~-------D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~   81 (316)
T 3bg1_A            9 DTSHEDMIHDAQMDYYGTRLATCSS-------DRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR   81 (316)
T ss_dssp             -----CCEEEEEECGGGCEEEEEET-------TTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred             cccccCeEEEeeEcCCCCEEEEEeC-------CCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence            3446678888888888888887764       89999999988753  44554 456999999964    3455555 89


Q ss_pred             eEEEEECCCCc--eeeEEeCCCCCceEEEEeeCCC--ccEEEEeCCCCccEEEEEEccCCce---eEEEecccCCeeEEE
Q 019349          114 KTYIYDANTLA--ILDTIDTVPNLKGLCAFSPSLN--ACFLAVPASTTKGSVLVYNVMELHS---HCEIDAHQAPLAAIV  186 (342)
Q Consensus       114 ~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~g~i~iwd~~~~~~---~~~~~~h~~~v~~i~  186 (342)
                      +|++||+++++  ....+..|...  +.+++++|+  +.+|++++  .||+|++||++....   ...+.+|...|.+++
T Consensus        82 ~v~iWd~~~~~~~~~~~~~~h~~~--V~~v~~~p~~~g~~lasgs--~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (316)
T 3bg1_A           82 KVIIWREENGTWEKSHEHAGHDSS--VNSVCWAPHDYGLILACGS--SDGAISLLTYTGEGQWEVKKINNAHTIGCNAVS  157 (316)
T ss_dssp             CEEEECCSSSCCCEEEEECCCSSC--CCEEEECCTTTCSCEEEEC--SSSCEEEEEECSSSCEEECCBTTSSSSCBCCCE
T ss_pred             EEEEEECCCCcceEEEEccCCCCc--eEEEEECCCCCCcEEEEEc--CCCCEEEEecCCCCCcceeeeeccccCCcceEE
Confidence            99999998863  45555555444  444555554  77888887  689999999987632   345678999999999


Q ss_pred             ECCC-----------------CCEEEEEeCCCcEEEEEEcCCC---eeEEEeccCcCceeEEEEEEecCC----CcccEE
Q 019349          187 LSSN-----------------GMYIATASEQGTIIRVFLVSEA---TKSYSFRRGTYPSTIFSLSFGQSM----QFQDIL  242 (342)
Q Consensus       187 ~s~d-----------------g~~lat~s~dg~~irlwd~~~~---~~~~~~~~~~~~~~v~~l~fs~d~----~~~~~l  242 (342)
                      |+|+                 +++||+|+.|++ ||+||++.+   +.+..+..  +...|.+++|+|++    .   +|
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~-v~lWd~~~~~~~~~~~~l~~--h~~~V~~v~~sp~~~~~~~---~l  231 (316)
T 3bg1_A          158 WAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNL-IKLWKEEEDGQWKEEQKLEA--HSDWVRDVAWAPSIGLPTS---TI  231 (316)
T ss_dssp             ECCCCCC------CCSCCCCCCCBEECCBTTSB-CCEEEECTTSCEEEEECCBC--CSSCEEEEECCCCSSCSCC---EE
T ss_pred             EccccCCccccccccccCccccceEEEecCCCe-EEEEEeCCCCccceeeeccc--CCCceEEEEecCCCCCCCc---eE
Confidence            9998                 478999999998 589999765   34455543  35579999999986    6   89


Q ss_pred             EEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          243 VATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       243 ~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      ++++.|++|+||+++.......   ....+..+..              .+..+.+.++++.|++++.||.|++|+.+.+
T Consensus       232 as~s~D~~v~iw~~~~~~~~~~---~~~~~~~~~~--------------~v~~v~~sp~g~~las~~~D~~v~lw~~~~~  294 (316)
T 3bg1_A          232 ASCSQDGRVFIWTCDDASSNTW---SPKLLHKFND--------------VVWHVSWSITANILAVSGGDNKVTLWKESVD  294 (316)
T ss_dssp             EEEETTCEEEEEECSSTTCCCC---BCCEEEECSS--------------CEEEEEECTTTCCEEEEESSSCEEEEEECTT
T ss_pred             EEEcCCCeEEEEEccCccccch---hhhhhhcCCC--------------cEEEEEEcCCCCEEEEEcCCCeEEEEEECCC
Confidence            9999999999999876421110   0011111111              1223333455588999999999999988643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.97  E-value=6.8e-28  Score=239.75  Aligned_cols=242  Identities=11%  Similarity=0.125  Sum_probs=196.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .+..+|.+++|+|++++|++|+.++ +++||+.+++.....  +...+..+.+.+++..+++++.       |++|++||
T Consensus        53 ~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~-------dg~i~vw~  125 (814)
T 3mkq_A           53 VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSD-------DLTVKLWN  125 (814)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEET-------TSEEEEEE
T ss_pred             cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcC-------CCEEEEEE
Confidence            5778999999999999999998887 699999999776554  4466778888888888876664       89999999


Q ss_pred             CCCC-cEEEEEe-cCCceEEEEEcC-Ce--EEEEE-CCeEEEEECCCCceeeEEeCCC-CCceEEEEeeCCCccEEEEeC
Q 019349           82 TTTG-TALRELN-FLTSILAVRLNK-KR--LVIVL-REKTYIYDANTLAILDTIDTVP-NLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        82 ~~~~-~~~~~~~-~~~~v~~i~~~~-~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      +.++ .....+. +...|.+++|+| +.  +++++ |+.|++||+.+++....+..+. ......++++.+++.++++++
T Consensus       126 ~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~  205 (814)
T 3mkq_A          126 WENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITAS  205 (814)
T ss_dssp             GGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEEC
T ss_pred             CCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEe
Confidence            9887 4455554 456899999998 54  33333 8899999999888777776544 434445555545888999888


Q ss_pred             CCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349          155 STTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  234 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~  234 (342)
                        .+|.|++||+.+++.+..+.+|..+|++++|+|+|++|++++.||+ |++||+.+++.+..+..+  ...+.+++|+|
T Consensus       206 --~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-v~vwd~~~~~~~~~~~~~--~~~v~~~~~~~  280 (814)
T 3mkq_A          206 --DDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGT-LKIWNSSTYKVEKTLNVG--LERSWCIATHP  280 (814)
T ss_dssp             --TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEETTSC-EEEEETTTCSEEEEECCS--SSSEEEEEECT
T ss_pred             --CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCe-EEEEECCCCcEEEEeecC--CCcEEEEEEcc
Confidence              6899999999999999999999999999999999999999999998 589999999998888644  45699999999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          235 SMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       235 d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      ++.  ..+++++.++.+.+|++....
T Consensus       281 ~~~--~~~~~~~~~~~~~~~~~~~~~  304 (814)
T 3mkq_A          281 TGR--KNYIASGFDNGFTVLSLGNDE  304 (814)
T ss_dssp             TCG--GGEEEEEETTEEEEEECSCCS
T ss_pred             CCC--ceEEEEEeCCCEEEEEcCCCC
Confidence            986  244666667889999987654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.97  E-value=1.4e-27  Score=212.92  Aligned_cols=240  Identities=14%  Similarity=0.147  Sum_probs=187.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..+..+|.+++|+|++++|++|+.++ +++|+...........  ........+....+.++.++.       |+.+++|
T Consensus        83 ~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~-------d~~~~~~  155 (340)
T 4aow_A           83 RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR-------DKTIKLW  155 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET-------TSCEEEE
T ss_pred             eCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC-------CCeEEEE
Confidence            35678999999999999999999888 5999998886654433  245555666666777766654       8999999


Q ss_pred             ECCCCcEEEEE--ecCCceEEEEEcCC---eEEE-EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           81 NTTTGTALREL--NFLTSILAVRLNKK---RLVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        81 d~~~~~~~~~~--~~~~~v~~i~~~~~---~~~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      |..........  .+...+..++++++   .+++ ++ |+.|++||+.+++.+..+..+..  .+.+++++|++.+|+++
T Consensus       156 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~--~v~~~~~s~~~~~l~s~  233 (340)
T 4aow_A          156 NTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTG--YLNTVTVSPDGSLCASG  233 (340)
T ss_dssp             CTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred             EeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCC--cEEEEEECCCCCEEEEE
Confidence            98766544332  23457888888654   2333 33 78999999999998888866544  57778888889999998


Q ss_pred             CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC-------cCcee
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-------TYPST  226 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~-------~~~~~  226 (342)
                      +  .||.|++||+.+.+++..+..| ..|.+++|+|++.++ +++.|+. |++||++++..+..+...       .+...
T Consensus       234 s--~Dg~i~iwd~~~~~~~~~~~~~-~~v~~~~~~~~~~~~-~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~  308 (340)
T 4aow_A          234 G--KDGQAMLWDLNEGKHLYTLDGG-DIINALCFSPNRYWL-CAATGPS-IKIWDLEGKIIVDELKQEVISTSSKAEPPQ  308 (340)
T ss_dssp             E--TTCEEEEEETTTTEEEEEEECS-SCEEEEEECSSSSEE-EEEETTE-EEEEETTTTEEEEEECCC-------CCCCC
T ss_pred             e--CCCeEEEEEeccCceeeeecCC-ceEEeeecCCCCcee-eccCCCE-EEEEECCCCeEEEeccccceeeeccCCCCC
Confidence            8  6899999999999998888754 679999999987655 5556887 589999998887776431       23456


Q ss_pred             EEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      |++++|+||++   +|++|+.||+|+|||+++++
T Consensus       309 v~~l~~s~dg~---~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          309 CTSLAWSADGQ---TLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEEECTTSS---EEEEEETTSCEEEEEEEC--
T ss_pred             EEEEEECCCCC---EEEEEeCCCEEEEEeCCCcC
Confidence            99999999999   99999999999999998764

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.1e-27  Score=215.59  Aligned_cols=245  Identities=11%  Similarity=0.121  Sum_probs=195.9

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      ..+..+|.+++|+|++++|++++.++ +++||+.+++.+.... ...+..+.+.++++.++.++..  ....++.|++||
T Consensus        71 ~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~--~~~~~g~i~~~d  148 (369)
T 3zwl_B           71 DGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDN--VMKNPGSINIYE  148 (369)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSSEEEEEECC--BTTBCCEEEEEE
T ss_pred             hhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeEEEEEccCCCEEEEecCC--ccCCCCEEEEEE
Confidence            35778999999999999999998887 6999999987765543 4667788888888888776641  000138999999


Q ss_pred             CCCCcE-----------EEEEe-cCC--ceEEEEEcCCe--EEEEE-CCeEEEEECCC-CceeeEEeCCCCCceEEEEee
Q 019349           82 TTTGTA-----------LRELN-FLT--SILAVRLNKKR--LVIVL-REKTYIYDANT-LAILDTIDTVPNLKGLCAFSP  143 (342)
Q Consensus        82 ~~~~~~-----------~~~~~-~~~--~v~~i~~~~~~--~~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~  143 (342)
                      +.++..           +..+. +..  .+.+++++++.  ++++. ++.|++||+.+ .+.+..+..+..  .+.++++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--~v~~~~~  226 (369)
T 3zwl_B          149 IERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEK--SISDMQF  226 (369)
T ss_dssp             EEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSS--CEEEEEE
T ss_pred             ecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCC--ceeEEEE
Confidence            876542           12221 222  78999998874  33344 78999999998 677777776544  5777788


Q ss_pred             CCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCc-------------EEEEEEcC
Q 019349          144 SLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT-------------IIRVFLVS  210 (342)
Q Consensus       144 ~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~-------------~irlwd~~  210 (342)
                      +|++.+|++++  .||.|++||+.+++.+..+. +..++.+++|+|+++++++++.++.             .+++||+.
T Consensus       227 ~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~  303 (369)
T 3zwl_B          227 SPDLTYFITSS--RDTNSFLVDVSTLQVLKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKI  303 (369)
T ss_dssp             CTTSSEEEEEE--TTSEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETT
T ss_pred             CCCCCEEEEec--CCceEEEEECCCCceeeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecC
Confidence            88888999887  58999999999999888887 7889999999999999999999872             36899999


Q ss_pred             CCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          211 EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       211 ~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      +++.+..+..+  ...|.+++|+|+++   +|++++.||+|+||+++...
T Consensus       304 ~~~~~~~~~~~--~~~v~~~~~s~~~~---~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          304 FEEEIGRVQGH--FGPLNTVAISPQGT---SYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             TCCEEEEEECC--SSCEEEEEECTTSS---EEEEEETTSEEEEEEECHHH
T ss_pred             CCcchhheecc--cCcEEEEEECCCCC---EEEEEcCCCeEEEEECcccc
Confidence            99998888643  45699999999999   99999999999999998754

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.97  E-value=1.2e-28  Score=221.25  Aligned_cols=238  Identities=11%  Similarity=0.146  Sum_probs=180.2

Q ss_pred             CCCCCeEEEEEcCC---CCEEEEEcCCc-EEEEeCCCCc-EEEE--EeeCCEEEEEEc------CCCCeEEEEcCCCCCC
Q 019349            5 SSSYPVFFVSFNQD---NSGFALSTKDG-FKIFDSSTGR-LCYE--RAVGAFSIVEML------YSSSLLAIVGAGEQPS   71 (342)
Q Consensus         5 ~~~~~V~~l~fs~d---~~~la~g~~~g-~~v~d~~~~~-~~~~--~~~~~~~~~~~~------~~~~~~~~~~~g~~~~   71 (342)
                      .+..+|.+++|+|+   +++|++|+.++ +++||+.+++ ....  .+...+..+.+.      ++.+.++.++      
T Consensus        63 ~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~------  136 (357)
T 3i2n_A           63 EKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGS------  136 (357)
T ss_dssp             EESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEE------
T ss_pred             cccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEe------
Confidence            46679999999999   68999998777 6999998876 4333  344566666543      3455666555      


Q ss_pred             CCCCeEEEEECCCCc-EEEEEec-----CCceEEEE----EcCC--eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceE
Q 019349           72 LSPRRLCLFNTTTGT-ALRELNF-----LTSILAVR----LNKK--RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGL  138 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~-~~~~~~~-----~~~v~~i~----~~~~--~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~  138 (342)
                       .|++|++||+.+++ .+..+..     ...+.++.    ++++  .++++. ++.|++||+++++...... +  ...+
T Consensus       137 -~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~--~~~v  212 (357)
T 3i2n_A          137 -RDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-I--KNGV  212 (357)
T ss_dssp             -TTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-C--SSCE
T ss_pred             -CCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-C--CCce
Confidence             38999999999887 6666643     22788888    4444  344444 7899999999988755533 2  3457


Q ss_pred             EEEeeCC---CccEEEEeCCCCccEEEEEEccCCceeEEEe-----cccCCeeEEEECCCCC-EEEEEeCCCcEEEEEEc
Q 019349          139 CAFSPSL---NACFLAVPASTTKGSVLVYNVMELHSHCEID-----AHQAPLAAIVLSSNGM-YIATASEQGTIIRVFLV  209 (342)
Q Consensus       139 ~~~~~~~---~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-----~h~~~v~~i~~s~dg~-~lat~s~dg~~irlwd~  209 (342)
                      .+++++|   ++.++++++  .+|.|++||++++++...+.     +|..+|++++|+|+++ +|++++.||. |++||+
T Consensus       213 ~~~~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~-i~iwd~  289 (357)
T 3i2n_A          213 CSLEFDRKDISMNKLVATS--LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGG-LHLWKY  289 (357)
T ss_dssp             EEEEESCSSSSCCEEEEEE--STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSE-EEEEEE
T ss_pred             EEEEcCCCCCCCCEEEEEC--CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCc-EEEeec
Confidence            7778887   788888887  68999999998877655544     8999999999999998 8999999997 589999


Q ss_pred             CCCe-------------------eEEEeccCcCceeEEEEEEecCCCcccEEE-EEeCCCcEEEEecCCCC
Q 019349          210 SEAT-------------------KSYSFRRGTYPSTIFSLSFGQSMQFQDILV-ATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       210 ~~~~-------------------~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~-~~s~dg~i~vwd~~~~~  260 (342)
                      +++.                   .+..+..  +...|.+++|+|+++   +|+ +++.||.|+|||+.+.+
T Consensus       290 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~---~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          290 EYPIQRSKKDSEGIEMGVAGSVSLLQNVTL--STQPISSLDWSPDKR---GLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             ECCSCC--CCTTSCCCCCCCEEEEEEEEEC--CSSCEEEEEECSSST---TEEEEEETTSEEEEEEECC--
T ss_pred             CCCcccccccCCCCccccccccceeecccc--CCCCeeEEEEcCCCC---eEEEEecCCCcEEEEECCCcc
Confidence            8643                   4445543  355699999999998   787 89999999999998654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=1.2e-28  Score=226.09  Aligned_cols=280  Identities=11%  Similarity=0.058  Sum_probs=203.7

Q ss_pred             CeEEEEEcCCCCEEE-EEcCCc-EEEEeCCCCcE------EEEEeeCCEEEEEEcC-CCCeEEEEcCCCCCCCCCCeEEE
Q 019349            9 PVFFVSFNQDNSGFA-LSTKDG-FKIFDSSTGRL------CYERAVGAFSIVEMLY-SSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         9 ~V~~l~fs~d~~~la-~g~~~g-~~v~d~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      ....++++|+...++ +|+.+| ++||++.....      .+..|.+.+..+.+.+ +.+.+++++.       |++|++
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~-------dg~v~v  108 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSE-------DCTVMV  108 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEET-------TSEEEE
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeC-------CCeEEE
Confidence            455789999887654 456555 79999865421      1334557788888887 6777777664       899999


Q ss_pred             EECCCC-------cEEEEEe-cCCceEEEEEcCCe--EE-EEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCc
Q 019349           80 FNTTTG-------TALRELN-FLTSILAVRLNKKR--LV-IVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        80 wd~~~~-------~~~~~~~-~~~~v~~i~~~~~~--~~-~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  147 (342)
                      ||+.++       +++..+. +...|.+++|+++.  ++ .++ |+.|++||+.+++.+..+....+...+.+++++|++
T Consensus       109 w~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~  188 (402)
T 2aq5_A          109 WEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDG  188 (402)
T ss_dssp             EECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTS
T ss_pred             EEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCC
Confidence            999887       5566665 55689999999874  33 344 889999999999988888423344568888888899


Q ss_pred             cEEEEeCCCCccEEEEEEccCCceeEEE-ecccCC-eeEEEECCCCCEEEEE---eCCCcEEEEEEcCCCee-EEEeccC
Q 019349          148 CFLAVPASTTKGSVLVYNVMELHSHCEI-DAHQAP-LAAIVLSSNGMYIATA---SEQGTIIRVFLVSEATK-SYSFRRG  221 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~~~~~~~~-~~h~~~-v~~i~~s~dg~~lat~---s~dg~~irlwd~~~~~~-~~~~~~~  221 (342)
                      .++++++  .||.|++||+++++.+..+ .+|... +.+++|+|+|++|++|   +.|+. |++||+++++. +..... 
T Consensus       189 ~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~-i~iwd~~~~~~~~~~~~~-  264 (402)
T 2aq5_A          189 ALICTSC--RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQ-VALWDTKHLEEPLSLQEL-  264 (402)
T ss_dssp             SCEEEEE--TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEE-EEEEETTBCSSCSEEEEC-
T ss_pred             CEEEEEe--cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCce-EEEEcCccccCCceEEec-
Confidence            9999888  6899999999999999888 788876 9999999999999999   78887 58999998764 333321 


Q ss_pred             cCceeEEEEEEecCCCcccEEE-EEeCCCcEEEEecCCCCCCCCCCCccccccccc--cccccccccccccceeeeccCC
Q 019349          222 TYPSTIFSLSFGQSMQFQDILV-ATSSSGSLHVFSPGFAINQRRGGRTSSILGSIL--PESVNEVLDPADHHVLRNAFPA  298 (342)
Q Consensus       222 ~~~~~v~~l~fs~d~~~~~~l~-~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  298 (342)
                      .+...+.+++|+|+++   +|+ +++.||+|++||++..++..      ..+..+.  .......|+|.+          
T Consensus       265 ~~~~~v~~~~~s~~~~---~l~~~g~~dg~i~i~d~~~~~~~~------~~l~~~~~~~~v~~~~~sp~~----------  325 (402)
T 2aq5_A          265 DTSSGVLLPFFDPDTN---IVYLCGKGDSSIRYFEITSEAPFL------HYLSMFSSKESQRGMGYMPKR----------  325 (402)
T ss_dssp             CCCSSCEEEEEETTTT---EEEEEETTCSCEEEEEECSSTTCE------EEEEEECCSSCCSEEEECCGG----------
T ss_pred             cCCCceeEEEEcCCCC---EEEEEEcCCCeEEEEEecCCCcce------EeecccccCCcccceEEeccc----------
Confidence            2344589999999998   776 55679999999998765311      0011111  111223444433          


Q ss_pred             CccccEEEEEEeCCcEEEEEEecCCC
Q 019349          299 GVKRASVSVITYNGYFVEYIFSINNC  324 (342)
Q Consensus       299 ~~~~~~l~~~~~dg~v~~~~~~~~~~  324 (342)
                          ..++  +.|+.+++|++.....
T Consensus       326 ----~~~~--s~~~~~~~~~l~~~~~  345 (402)
T 2aq5_A          326 ----GLEV--NKCEIARFYKLHERKC  345 (402)
T ss_dssp             ----GSCG--GGTEEEEEEEEETTEE
T ss_pred             ----ccce--ecceeEEEEEcCCCcE
Confidence                3443  4677999999986443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.7e-27  Score=209.66  Aligned_cols=233  Identities=11%  Similarity=0.126  Sum_probs=180.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC---cEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG---RLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      .+...|.+++|+|++++|++|+.++ +++|++...   +.....  +...+..+.+  +++.++..+.       |+.|+
T Consensus        57 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~-------d~~i~  127 (313)
T 3odt_A           57 TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSW-------DKTAK  127 (313)
T ss_dssp             ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEET-------TSEEE
T ss_pred             cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeC-------CCCEE
Confidence            4578999999999999999998887 599997654   333333  3345555554  6677766654       89999


Q ss_pred             EEECCCCcEEEEEe-cCCceEEEEEcC---CeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           79 LFNTTTGTALRELN-FLTSILAVRLNK---KRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        79 iwd~~~~~~~~~~~-~~~~v~~i~~~~---~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      +||  .++.+..+. +...+.++.+.+   +.+++++ |+.|++||  ..+....+.. .+...+.++++++++. ++++
T Consensus       128 ~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~-~~~~~i~~~~~~~~~~-~~~~  201 (313)
T 3odt_A          128 VWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSG-IHNDVVRHLAVVDDGH-FISC  201 (313)
T ss_dssp             EEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECS-SCSSCEEEEEEEETTE-EEEE
T ss_pred             EEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEec-cCcccEEEEEEcCCCe-EEEc
Confidence            999  566666665 455888888854   4555555 88999999  4455555554 1334566667777776 6666


Q ss_pred             CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs  233 (342)
                      +  .+|.|++||+++++.+..+.+|..+|++++|+|+| .|++++.||. |++||+++++.+..+..+  ...|.+++|+
T Consensus       202 ~--~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~-v~iwd~~~~~~~~~~~~~--~~~i~~~~~~  275 (313)
T 3odt_A          202 S--NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRT-VRIWSKENGSLKQVITLP--AISIWSVDCM  275 (313)
T ss_dssp             E--TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSE-EEEECTTTCCEEEEEECS--SSCEEEEEEC
T ss_pred             c--CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCE-EEEEECCCCceeEEEecc--CceEEEEEEc
Confidence            6  58999999999999999999999999999999999 5999999997 589999999998888643  4569999999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~~~~~~  262 (342)
                      |+++    +++++.||.|++||++..+..
T Consensus       276 ~~~~----~~~~~~dg~i~iw~~~~~~~~  300 (313)
T 3odt_A          276 SNGD----IIVGSSDNLVRIFSQEKSRWA  300 (313)
T ss_dssp             TTSC----EEEEETTSCEEEEESCGGGCC
T ss_pred             cCCC----EEEEeCCCcEEEEeCCCCcee
Confidence            9997    567999999999999876543

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.97  E-value=5.2e-28  Score=220.05  Aligned_cols=234  Identities=13%  Similarity=0.117  Sum_probs=182.9

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEeCCCCcEEEEE-e---eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            5 SSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYER-A---VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         5 ~~~~~V~~l~fs~-d~~~la~g~~~g-~~v~d~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      .+...|.+++|+| ++++|++|+.++ +++||+......... +   ...+..+.+.++.+.++..+.       |+.|+
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i~  188 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDS-------TGRLL  188 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEET-------TSEEE
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECC-------CCCEE
Confidence            5788999999999 778899998877 699999865432221 1   144778888888888877664       89999


Q ss_pred             EEECCCCcEEEEEe-cCCceEEEEEcCCe---EEEEE-CCeEEEEECCC----CceeeEEeCCCCCceEEEEeeCC-Ccc
Q 019349           79 LFNTTTGTALRELN-FLTSILAVRLNKKR---LVIVL-REKTYIYDANT----LAILDTIDTVPNLKGLCAFSPSL-NAC  148 (342)
Q Consensus        79 iwd~~~~~~~~~~~-~~~~v~~i~~~~~~---~~~~~-d~~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~-~~~  148 (342)
                      +||+ +++++..+. +...|.+++|+++.   ++.++ |+.|++||+++    +..+..+.   +...+.+++++| ++.
T Consensus       189 i~d~-~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~---~~~~v~~~~~s~~~~~  264 (383)
T 3ei3_B          189 LLGL-DGHEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMP---HEKPVNAAYFNPTDST  264 (383)
T ss_dssp             EEET-TSCEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEE---CSSCEEEEEECTTTSC
T ss_pred             EEEC-CCCEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEec---CCCceEEEEEcCCCCC
Confidence            9999 567777765 45689999999874   34444 88999999987    55666553   344678888888 888


Q ss_pred             EEEEeCCCCccEEEEEEccCCceeEEEeccc-----------------CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 019349          149 FLAVPASTTKGSVLVYNVMELHSHCEIDAHQ-----------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~-----------------~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~  211 (342)
                      ++++++  .||.|++||+++++....+..|.                 ..+..++|+|||++  +|+.||+ |++||+.+
T Consensus       265 ~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~-i~iwd~~~  339 (383)
T 3ei3_B          265 KLLTTD--QRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRT-IDIYDANS  339 (383)
T ss_dssp             EEEEEE--SSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCC-EEEEETTT
T ss_pred             EEEEEc--CCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCe-EEEEecCC
Confidence            999887  58999999999988777776553                 23445777777776  7788998 58999999


Q ss_pred             CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          212 ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      ++.+..+..+.+...+.+++|+|+++   +|++++ ||+|+|||+++
T Consensus       340 ~~~~~~l~~~~~~~~~~~~~~s~~g~---~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          340 GGLVHQLRDPNAAGIISLNKFSPTGD---VLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CCEEEEECBTTBCSCCCEEEECTTSS---EEEEEE-TTEEEEEECC-
T ss_pred             CceeeeecCCCCCceEEEEEEecCcc---EEEEec-CCcEEEEecCC
Confidence            99999987544455678889999999   999997 99999999874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=4.1e-27  Score=207.93  Aligned_cols=239  Identities=9%  Similarity=0.090  Sum_probs=180.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      ..+...|++++|+|++++|++|+.|+ +++||+.+++.+.....+......+.+.+..++..+.       ++.+++|+.
T Consensus        64 ~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~-------~~~~~~~~~  136 (318)
T 4ggc_A           64 EQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSR-------SGHIHHHDV  136 (318)
T ss_dssp             CSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEET-------TSEEEEEET
T ss_pred             cCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEec-------CCceEeeec
Confidence            35677899999999999999999887 6999999998887766655555666666777766554       899999998


Q ss_pred             CCCcE-EEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCcee----eEEeCCCCCceEEEEeeCCCcc-EE-E
Q 019349           83 TTGTA-LRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAIL----DTIDTVPNLKGLCAFSPSLNAC-FL-A  151 (342)
Q Consensus        83 ~~~~~-~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~-~l-~  151 (342)
                      .++.. +..+. +...+..+.+.++.  ++.+. |+.|++||+.+++..    .....+.  ..+.++...++.. .+ .
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~  214 (318)
T 4ggc_A          137 RVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQ--GAVKAVAWCPWQSNVLAT  214 (318)
T ss_dssp             TSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCC--SCEEEEEECTTSTTEEEE
T ss_pred             CCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccC--CceEEEEecCCCCcEEEE
Confidence            77644 34443 45578888887764  33344 889999999876432    2222222  3344455444332 22 2


Q ss_pred             EeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe--CCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349          152 VPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS--EQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  229 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s--~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~  229 (342)
                      ..+. .++.|++||.......... .|...+..+.|+|+++.+++++  .||+ |++||+++++++.++..  |...|++
T Consensus       215 ~~~~-~~~~i~lwd~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~sg~~d~~-i~iwd~~~~~~~~~l~g--H~~~V~~  289 (318)
T 4ggc_A          215 GGGT-SDRHIRIWNVCSGACLSAV-DAHSQVCSILWSPHYKELISGHGFAQNQ-LVIWKYPTMAKVAELKG--HTSRVLS  289 (318)
T ss_dssp             EECT-TTCEEEEEETTTCCEEEEE-ECSSCEEEEEEETTTTEEEEEECTTTCC-EEEEETTTCCEEEEECC--CSSCEEE
T ss_pred             EecC-CCCEEEEEecccccccccc-cceeeeeeeeecccccceEEEEEcCCCE-EEEEECCCCcEEEEEcC--CCCCEEE
Confidence            3333 6899999999888766544 5677899999999999988765  7888 58999999999999864  3567999


Q ss_pred             EEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          230 LSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      |+|+||++   +|+++|.||+|+|||+...
T Consensus       290 l~~spdg~---~l~S~s~D~~v~iWd~~~~  316 (318)
T 4ggc_A          290 LTMSPDGA---TVASAAADETLRLWRCFEL  316 (318)
T ss_dssp             EEECTTSS---CEEEEETTTEEEEECCSCC
T ss_pred             EEEcCCCC---EEEEEecCCeEEEEECCCC
Confidence            99999999   9999999999999998654

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=5.7e-29  Score=235.34  Aligned_cols=244  Identities=11%  Similarity=0.059  Sum_probs=176.0

Q ss_pred             CCCCeEEEEEcCC------CCEEEEEcCCc-EEEEeCCCCcE-------------EEEEeeCCEEEEEEcCCCCeEEEEc
Q 019349            6 SSYPVFFVSFNQD------NSGFALSTKDG-FKIFDSSTGRL-------------CYERAVGAFSIVEMLYSSSLLAIVG   65 (342)
Q Consensus         6 ~~~~V~~l~fs~d------~~~la~g~~~g-~~v~d~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~   65 (342)
                      +.+.|.+++|+|+      +.+||+|+.|+ +++||+..++.             .+..+...+..+.+..+ +.++..+
T Consensus       206 ~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs  284 (524)
T 2j04_B          206 SFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGF  284 (524)
T ss_dssp             CCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEE
T ss_pred             cCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEe
Confidence            4578999999997      57899998887 69999976531             12223356666776543 4544443


Q ss_pred             CCCCCCCCCCeEEEEECCCCc-EEEEEe-cCCceEEE--EEcCCe--E-EEEE-CCeEEEEECCCCceeeEEeCCCCCce
Q 019349           66 AGEQPSLSPRRLCLFNTTTGT-ALRELN-FLTSILAV--RLNKKR--L-VIVL-REKTYIYDANTLAILDTIDTVPNLKG  137 (342)
Q Consensus        66 ~g~~~~~~d~~i~iwd~~~~~-~~~~~~-~~~~v~~i--~~~~~~--~-~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~  137 (342)
                             .|++|++||+++++ +...+. +...|.++  .++++.  + +.++ |++|+|||+++++.+..+..+.....
T Consensus       285 -------~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~  357 (524)
T 2j04_B          285 -------KNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSN  357 (524)
T ss_dssp             -------TTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCS
T ss_pred             -------CCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCc
Confidence                   49999999998764 334444 55689999  456653  3 4444 89999999998877666654433223


Q ss_pred             EEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe----
Q 019349          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT----  213 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~----  213 (342)
                      +.+++++|++..+++++  .|++|++||++++.++.++.+|.++|++|+|||+|++||+||.||+ |++||+..+.    
T Consensus       358 v~~v~fsp~~~~l~s~~--~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgt-v~lwd~~~~~~~~~  434 (524)
T 2j04_B          358 LVPVVYCPQIYSYIYSD--GASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADGS-LIITNAARRLLHGI  434 (524)
T ss_dssp             CCCEEEETTTTEEEEEC--SSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTTE-EECCBSCSSTTTCC
T ss_pred             ccceEeCCCcCeEEEeC--CCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCCE-EEEEechHhhcccc
Confidence            44566777777888877  5899999999999988889999999999999999999999999998 5899864220    


Q ss_pred             ----------eEEEec-----------c----------C-------cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          214 ----------KSYSFR-----------R----------G-------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       214 ----------~~~~~~-----------~----------~-------~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                                .+..+.           .          +       .+...|.+++|+|++....+||+|+.||+|+||+
T Consensus       435 ~~~~~~~~~~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          435 KNSSATQKSLRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             ------CCCCEEEECBCCSSSCEEEECCCCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             ccCccceeeeEEEEeccCCCCCeEEccCCceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence                      111110           0          0       1223589999999952112899999999999999


Q ss_pred             cCCCC
Q 019349          256 PGFAI  260 (342)
Q Consensus       256 ~~~~~  260 (342)
                      ++...
T Consensus       515 l~~~~  519 (524)
T 2j04_B          515 LSLEH  519 (524)
T ss_dssp             CSCC-
T ss_pred             ccccc
Confidence            87653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.6e-27  Score=213.99  Aligned_cols=248  Identities=10%  Similarity=0.094  Sum_probs=183.5

Q ss_pred             EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC--CCcEEEEEe-cCCceEEEEEcC----CeEEEEE-CC
Q 019349           42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT--TGTALRELN-FLTSILAVRLNK----KRLVIVL-RE  113 (342)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~--~~~~~~~~~-~~~~v~~i~~~~----~~~~~~~-d~  113 (342)
                      +..|...+..+.+.++++.+++++.       |+.|++||+.  +++.+..+. +...|.+++|++    +.++.++ |+
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg   79 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSS-------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   79 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEET-------TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTS
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEEC-------CCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCC
Confidence            4556678888888888888877764       8999999997  445555665 456899999974    3455555 88


Q ss_pred             eEEEEECCCCc--eeeEEeCCCCCceEEEEeeCCC--ccEEEEeCCCCccEEEEEEccCCc--eeEEEecccCCeeEEEE
Q 019349          114 KTYIYDANTLA--ILDTIDTVPNLKGLCAFSPSLN--ACFLAVPASTTKGSVLVYNVMELH--SHCEIDAHQAPLAAIVL  187 (342)
Q Consensus       114 ~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~  187 (342)
                      .|++||+.+++  .+..+..  +...+.+++++|+  +.++++++  .||.|++||+.+..  ....+..|..+|++++|
T Consensus        80 ~v~iwd~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~  155 (379)
T 3jrp_A           80 KVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW  155 (379)
T ss_dssp             CEEEEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCTTSCCCEEEEECCTTCEEEEEE
T ss_pred             EEEEEEcCCCceeEeeeecC--CCcceEEEEeCCCCCCCEEEEec--CCCcEEEEecCCCCceeeEEecCCCCceEEEEE
Confidence            99999999886  4445443  3446777788877  78888887  68999999998874  34567789999999999


Q ss_pred             CC-------------CCCEEEEEeCCCcEEEEEEcCCCee----EEEeccCcCceeEEEEEEecC---CCcccEEEEEeC
Q 019349          188 SS-------------NGMYIATASEQGTIIRVFLVSEATK----SYSFRRGTYPSTIFSLSFGQS---MQFQDILVATSS  247 (342)
Q Consensus       188 s~-------------dg~~lat~s~dg~~irlwd~~~~~~----~~~~~~~~~~~~v~~l~fs~d---~~~~~~l~~~s~  247 (342)
                      +|             ++.+|++++.||. |++||+++++.    +..+.  .+...|.+++|+|+   +.   +|++++.
T Consensus       156 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~--~h~~~v~~~~~sp~~~~~~---~l~s~~~  229 (379)
T 3jrp_A          156 APATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLE--GHSDWVRDVAWSPTVLLRS---YLASVSQ  229 (379)
T ss_dssp             CCCC----------CTTCEEEEEETTSC-EEEEEEETTTTEEEEEEEEC--CCSSCEEEEEECCCCSSSE---EEEEEET
T ss_pred             cCccccccccccCCCCCCEEEEEeCCCe-EEEEEecCCCcceeeEEEEe--cccCcEeEEEECCCCCCCC---eEEEEeC
Confidence            99             7999999999998 58999987653    33443  23556999999999   77   9999999


Q ss_pred             CCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          248 SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       248 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      ||+|++||++........    . +           .....+...+..+.+.++++.|++++.||.+++|+++..
T Consensus       230 dg~i~iwd~~~~~~~~~~----~-~-----------~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~  288 (379)
T 3jrp_A          230 DRTCIIWTQDNEQGPWKK----T-L-----------LKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE  288 (379)
T ss_dssp             TSCEEEEEESSTTSCCEE----E-E-----------SSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred             CCEEEEEeCCCCCcccee----e-e-----------eccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence            999999999876432110    0 0           000001111122333445588999999999999999853

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1e-28  Score=244.16  Aligned_cols=245  Identities=12%  Similarity=0.162  Sum_probs=186.8

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCC--cEEEE--EeeCCEEEEEEcCC--CCeEEEEcCCCCCCCCCC
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTG--RLCYE--RAVGAFSIVEMLYS--SSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~--~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~d~   75 (342)
                      ...|.++|++++|+|++++|++|+.+| +++||+.++  +....  .+.+.+..+.+.++  ++.+++++.       |+
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~-------Dg   77 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSY-------DG   77 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEET-------TS
T ss_pred             cccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeC-------CC
Confidence            457899999999999999999998887 699998744  33333  34467777888776  667776664       89


Q ss_pred             eEEEEECCCCc--EEEEEe-cCCceEEEEEcCC----eEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC--
Q 019349           76 RLCLFNTTTGT--ALRELN-FLTSILAVRLNKK----RLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL--  145 (342)
Q Consensus        76 ~i~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~----~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~--  145 (342)
                      +|++||+.+++  .+..+. +...|.+++|+++    .+++++ |+.|++||+.++..........+...+.+++++|  
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~  157 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPAT  157 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC
T ss_pred             eEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCcc
Confidence            99999999886  444444 4568999999876    344444 8899999998874332222223344677777777  


Q ss_pred             -----------CccEEEEeCCCCccEEEEEEccCC----ceeEEEecccCCeeEEEECCC---CCEEEEEeCCCcEEEEE
Q 019349          146 -----------NACFLAVPASTTKGSVLVYNVMEL----HSHCEIDAHQAPLAAIVLSSN---GMYIATASEQGTIIRVF  207 (342)
Q Consensus       146 -----------~~~~l~~~~~~~~g~i~iwd~~~~----~~~~~~~~h~~~v~~i~~s~d---g~~lat~s~dg~~irlw  207 (342)
                                 ++..+++++  .||.|++||++++    .....+.+|..+|++++|+|+   +++|++|+.||+ |++|
T Consensus       158 ~~~~~~~~~~~d~~~l~sgs--~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~-I~iw  234 (753)
T 3jro_A          158 IEEDGEHNGTKESRKFVTGG--ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRT-CIIW  234 (753)
T ss_dssp             ---------CGGGCCEEEEE--TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSC-EEEE
T ss_pred             cccccccccCCCCCEEEEEE--CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCE-EEEe
Confidence                       477888887  5899999999877    456678899999999999999   999999999998 5899


Q ss_pred             EcCCCeeEE---EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          208 LVSEATKSY---SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       208 d~~~~~~~~---~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      |+.+++...   ......+...|.+++|+|+++   +|++++.||.|++|+++...
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~---~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGN---VLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EESSSSSCCBCCBSSSSCCSSCCCCEEECTTTC---CEEEECSSSCEECCBCCSSS
T ss_pred             cCCCCCCcceeEEeccCCCCCceEEEEEcCCCC---EEEEEcCCCEEEEEecCCCC
Confidence            999874211   111122355699999999999   99999999999999998543

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.96  E-value=8.3e-28  Score=222.83  Aligned_cols=233  Identities=12%  Similarity=0.237  Sum_probs=185.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      +.+..+|.+++|  ++++|++|+.++ +++||+.+++.+.....+.-.+..+.++++.++.++.       |++|++||+
T Consensus       170 ~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~l~s~s~-------dg~i~vwd~  240 (435)
T 1p22_A          170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK-------DRSIAVWDM  240 (435)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET-------TSCEEEEEC
T ss_pred             cCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEcCCEEEEeeC-------CCcEEEEeC
Confidence            357889999999  788999998887 6999999998776665444444555566777666654       899999999


Q ss_pred             CCCcEEE---EE-ecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           83 TTGTALR---EL-NFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        83 ~~~~~~~---~~-~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      .+++.+.   .+ .+...|.++.++++.+++++ |+.|++||+++++.+..+..+..  .+.+++++  +.++++++  .
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~--~v~~~~~~--~~~l~~g~--~  314 (435)
T 1p22_A          241 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR--GIACLQYR--DRLVVSGS--S  314 (435)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEE--TTEEEEEE--T
T ss_pred             CCCCCceeeeEecCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCC--cEEEEEeC--CCEEEEEe--C
Confidence            8877652   23 34558999999888888887 88999999999999999876554  45666664  45788877  6


Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe---------eEEEeccCcCceeEE
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT---------KSYSFRRGTYPSTIF  228 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~---------~~~~~~~~~~~~~v~  228 (342)
                      ||.|++||+++++++..+.+|..+|.+++|  ++++|++|+.||+ |++||+.+++         .+..+..  +...|.
T Consensus       315 dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~--h~~~v~  389 (435)
T 1p22_A          315 DNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLVE--HSGRVF  389 (435)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEECC--CSSCCC
T ss_pred             CCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEEeCCCc-EEEEECCCCCCccccccchheeeccC--CCCCeE
Confidence            899999999999999999999999999999  7899999999998 5899997766         6677653  355699


Q ss_pred             EEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          229 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +++|  ++.   +|++++.||+|++||+.....
T Consensus       390 ~l~~--~~~---~l~s~s~Dg~i~iwd~~~~~~  417 (435)
T 1p22_A          390 RLQF--DEF---QIVSSSHDDTILIWDFLNDPA  417 (435)
T ss_dssp             CEEE--CSS---CEEECCSSSEEEEEC------
T ss_pred             EEEe--CCC---EEEEEeCCCEEEEEECCCCCC
Confidence            9999  666   899999999999999987654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.96  E-value=1.2e-27  Score=213.73  Aligned_cols=235  Identities=13%  Similarity=0.108  Sum_probs=190.9

Q ss_pred             CCCCCeEEEEEcCCCC-EEEEEcCCc-EEEEeC-CCCcEEE-EE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            5 SSSYPVFFVSFNQDNS-GFALSTKDG-FKIFDS-STGRLCY-ER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~-~la~g~~~g-~~v~d~-~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      .+..+|.+++|+|+++ +|++|+.++ +++||+ .+++... ..  +...+..+.+.+ .+.++.++.       |+.|+
T Consensus        54 ~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~-------d~~i~  125 (342)
T 1yfq_A           54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASW-------DGLIE  125 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEET-------TSEEE
T ss_pred             ecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcC-------CCeEE
Confidence            4678999999999999 999998877 699999 8876532 23  456677788877 777776654       89999


Q ss_pred             EEECCC---------CcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCC-CceeeEEeCCCCCceEEEEeeCC-C
Q 019349           79 LFNTTT---------GTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANT-LAILDTIDTVPNLKGLCAFSPSL-N  146 (342)
Q Consensus        79 iwd~~~---------~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~-~  146 (342)
                      +||+++         ++++..+.+...|.+++++++.++++. ++.|++||+++ +..............+.+++++| +
T Consensus       126 iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~  205 (342)
T 1yfq_A          126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE  205 (342)
T ss_dssp             EECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG
T ss_pred             EEcccccccccccccCCeeeEEeeCCceEEEEecCCcEEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC
Confidence            999987         777777777789999999999977766 78999999988 65432222223445677888888 8


Q ss_pred             ccEEEEeCCCCccEEEEEEccCC------ceeEEEecccC---------CeeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 019349          147 ACFLAVPASTTKGSVLVYNVMEL------HSHCEIDAHQA---------PLAAIVLSSNGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~------~~~~~~~~h~~---------~v~~i~~s~dg~~lat~s~dg~~irlwd~~~  211 (342)
                      +.++++++  .+|.|++||+...      +....+..|..         +|++++|+|++++|++++.||. |++||+.+
T Consensus       206 ~~~l~~~~--~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~-i~vwd~~~  282 (342)
T 1yfq_A          206 QEGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQT  282 (342)
T ss_dssp             GCEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTT
T ss_pred             CCEEEEEe--cCCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCce-EEEEcCcc
Confidence            88999888  5899999999876      77788888865         9999999999999999999998 58999999


Q ss_pred             CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc-EEEEec
Q 019349          212 ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS-LHVFSP  256 (342)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~-i~vwd~  256 (342)
                      ++.+..+..+ +...|.+++  |+++   +|++++.||+ .+.|..
T Consensus       283 ~~~~~~~~~~-h~~~v~~~~--~~~~---~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          283 RKKIKNFAKF-NEDSVVKIA--CSDN---ILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             TEEEEECCCC-SSSEEEEEE--ECSS---EEEEEEECTHHHHCSSS
T ss_pred             HhHhhhhhcc-cCCCceEec--CCCC---eEEEEecCCcccccccc
Confidence            9999888543 256799999  9999   9999999999 666654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=2.8e-27  Score=216.87  Aligned_cols=241  Identities=10%  Similarity=0.111  Sum_probs=186.1

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEeCCCCc-------E--EEEEeeCCEEEEEEcCCC-CeEEEEcCCCCCC
Q 019349            4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGR-------L--CYERAVGAFSIVEMLYSS-SLLAIVGAGEQPS   71 (342)
Q Consensus         4 ~~~~~~V~~l~fs~-d~~~la~g~~~g-~~v~d~~~~~-------~--~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~   71 (342)
                      ..+..+|++++|+| ++++|++|+.|+ +++||+.++.       .  .+..+...+..+.+.+++ +.++.++      
T Consensus        78 ~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~------  151 (402)
T 2aq5_A           78 CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAG------  151 (402)
T ss_dssp             CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEE------
T ss_pred             ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEc------
Confidence            35788999999999 999999999887 6999998762       2  344455778888888876 4565555      


Q ss_pred             CCCCeEEEEECCCCcEEEEEe---cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEE-eCCCCCceEEEEeeC
Q 019349           72 LSPRRLCLFNTTTGTALRELN---FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTI-DTVPNLKGLCAFSPS  144 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~~~---~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~  144 (342)
                       .|++|++||+.+++.+..+.   +...|.+++|+++.  +++++ |+.|++||+++++.+..+ ..+.. ..+..+.++
T Consensus       152 -~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~  229 (402)
T 2aq5_A          152 -CDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEG-TRPVHAVFV  229 (402)
T ss_dssp             -TTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCS-SSCCEEEEC
T ss_pred             -CCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCC-CcceEEEEc
Confidence             38999999999999998883   45689999998764  44444 889999999999988888 34433 234556677


Q ss_pred             CCccEEEEe---CCCCccEEEEEEccCCce-eEEEe-cccCCeeEEEECCCCCEEEE-EeCCCcEEEEEEcCCCee-EEE
Q 019349          145 LNACFLAVP---ASTTKGSVLVYNVMELHS-HCEID-AHQAPLAAIVLSSNGMYIAT-ASEQGTIIRVFLVSEATK-SYS  217 (342)
Q Consensus       145 ~~~~~l~~~---~~~~~g~i~iwd~~~~~~-~~~~~-~h~~~v~~i~~s~dg~~lat-~s~dg~~irlwd~~~~~~-~~~  217 (342)
                      +++.+++++   +  .++.|++||+++++. +.... .|...|.+++|+|++++|++ |+.||. |++||+.+++. +..
T Consensus       230 ~~~~~l~~g~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~-i~i~d~~~~~~~~~~  306 (402)
T 2aq5_A          230 SEGKILTTGFSRM--SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSS-IRYFEITSEAPFLHY  306 (402)
T ss_dssp             STTEEEEEEECTT--CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSC-EEEEEECSSTTCEEE
T ss_pred             CCCcEEEEeccCC--CCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCe-EEEEEecCCCcceEe
Confidence            888888887   4  589999999988764 33333 57788999999999999975 557987 58999998874 444


Q ss_pred             eccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          218 FRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       218 ~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      +....+...|.+++|+|++.   +++  +.++.+++|++....
T Consensus       307 l~~~~~~~~v~~~~~sp~~~---~~~--s~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          307 LSMFSSKESQRGMGYMPKRG---LEV--NKCEIARFYKLHERK  344 (402)
T ss_dssp             EEEECCSSCCSEEEECCGGG---SCG--GGTEEEEEEEEETTE
T ss_pred             ecccccCCcccceEEecccc---cce--ecceeEEEEEcCCCc
Confidence            43333346799999999998   665  456799999997653

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=8e-27  Score=205.03  Aligned_cols=272  Identities=10%  Similarity=0.082  Sum_probs=177.2

Q ss_pred             CeEEEEEcCCCC---EEEEEcCCcEEEEeCCCC---cEEEEEeeCCEEEEEEcCCC---CeEEEEcCCCCC--------C
Q 019349            9 PVFFVSFNQDNS---GFALSTKDGFKIFDSSTG---RLCYERAVGAFSIVEMLYSS---SLLAIVGAGEQP--------S   71 (342)
Q Consensus         9 ~V~~l~fs~d~~---~la~g~~~g~~v~d~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~~~~~g~~~--------~   71 (342)
                      .+.++.|-..|-   +++++++..+++|+...+   ++++..+.+.+.+..+.+.+   +.+.++-|.-..        .
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~s  120 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITACEDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCS  120 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEESSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC-
T ss_pred             EEeeeeeccCCCCccEEEEeccceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEEC
Confidence            356666665554   788999999999999888   78888888776666665544   333222211000        0


Q ss_pred             CCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE----CCeEEEEEC-CCCceeeEEeCCCCCceEEEEee-CC
Q 019349           72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL----REKTYIYDA-NTLAILDTIDTVPNLKGLCAFSP-SL  145 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~----d~~i~i~d~-~~~~~~~~~~~~~~~~~~~~~~~-~~  145 (342)
                      .+|+.+..|.+..+       +...|.+  +...+++..+    |+.|++|++ .+++.+..+..+.....++++++ .+
T Consensus       121 pd~~~~~~~l~s~g-------~~~~v~~--l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g  191 (356)
T 2w18_A          121 SDDESEKQVLLKSG-------NIKAVLG--LTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQG  191 (356)
T ss_dssp             -----CCEEEEEEE-------EEEEEEE--ETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEET
T ss_pred             CCccccccEEEeCC-------CeEEEEe--cCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCC
Confidence            01122222222111       1112333  2334444442    789999999 55888888877777778888888 56


Q ss_pred             CccEEEEeCCCCccEEEEEEccCCceeEEEeccc---CCeeEEEECCCCCEE------------EEEeCCCcEEEEEEcC
Q 019349          146 NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ---APLAAIVLSSNGMYI------------ATASEQGTIIRVFLVS  210 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~---~~v~~i~~s~dg~~l------------at~s~dg~~irlwd~~  210 (342)
                      ++..|++++  .|++|+|||+.++++++++.+|.   ..+.+++|+|||.++            ++|+.|++ ||+||..
T Consensus       192 ~~~~LaSgS--~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~t-IklWd~~  268 (356)
T 2w18_A          192 MQEALLGTT--IMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQ-LIVINPK  268 (356)
T ss_dssp             STTEEEEEE--TTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEE-EEEEETT
T ss_pred             CCceEEEec--CCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcE-EEEEECC
Confidence            778999888  69999999999999999998754   367788999999987            66788887 5899999


Q ss_pred             CCeeEEEec----cCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccc-cccc
Q 019349          211 EATKSYSFR----RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVN-EVLD  285 (342)
Q Consensus       211 ~~~~~~~~~----~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  285 (342)
                      +++.+..+.    .++ ...+.+..++  +.   ++|+++.|++|+|||+++++...+       +.++....+. ..|+
T Consensus       269 tgk~l~v~~~~~p~Gh-~~~~lsg~~s--g~---~lASgS~DgTIkIWDl~tGk~l~t-------L~gH~~~vvs~vafS  335 (356)
T 2w18_A          269 TTLSVGVMLYCLPPGQ-AGRFLEGDVK--DH---CAAAILTSGTIAIWDLLLGQCTAL-------LPPVSDQHWSFVKWS  335 (356)
T ss_dssp             TTEEEEEEEECCCTTC-CCCEEEEEEE--TT---EEEEEETTSCEEEEETTTCSEEEE-------ECCC--CCCCEEEEC
T ss_pred             CCEEEEEEEeeccCCC-cceeEccccC--CC---EEEEEcCCCcEEEEECCCCcEEEE-------ecCCCCCeEEEEEEC
Confidence            998876542    222 2234344443  77   899999999999999988765332       1111111121 2354


Q ss_pred             ccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          286 PADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                      |              ++++|++++.||+|++|++
T Consensus       336 P--------------DG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          336 G--------------TDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             S--------------SSSEEEEECTTSCEEEEEE
T ss_pred             C--------------CCCEEEEEECCCcEEEecC
Confidence            4              4489999999999999985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.96  E-value=1.2e-26  Score=206.49  Aligned_cols=266  Identities=12%  Similarity=0.077  Sum_probs=185.6

Q ss_pred             EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc----EEEEEe-cCCceEEEEEcC----CeEEEEE-
Q 019349           42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT----ALRELN-FLTSILAVRLNK----KRLVIVL-  111 (342)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~----~~~~~~-~~~~v~~i~~~~----~~~~~~~-  111 (342)
                      ...|.+.+..+.+.++++.++.++.       |++|++||+.++.    .+..+. +...|.+++|++    +.++.++ 
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~-------dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~   79 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSS-------DQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASY   79 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEET-------TSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEET
T ss_pred             CcccccceeEEEEcCCCCEEEEeeC-------CCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcC
Confidence            4456678888888888888877764       8999999998763    444444 456899999986    2344444 


Q ss_pred             CCeEEEEECCCC---------ceeeEEeCCCCCceEEEEeeCCC--ccEEEEeCCCCccEEEEEEccCCceeEEEe----
Q 019349          112 REKTYIYDANTL---------AILDTIDTVPNLKGLCAFSPSLN--ACFLAVPASTTKGSVLVYNVMELHSHCEID----  176 (342)
Q Consensus       112 d~~i~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~----  176 (342)
                      |+.|++||+.++         +.+..+..+  ...+.+++++|+  +.++++++  .||.|++||+++++.+..+.    
T Consensus        80 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~--~dg~v~iwd~~~~~~~~~~~~~~~  155 (351)
T 3f3f_A           80 DKTVKLWEEDPDQEECSGRRWNKLCTLNDS--KGSLYSVKFAPAHLGLKLACLG--NDGILRLYDALEPSDLRSWTLTSE  155 (351)
T ss_dssp             TSCEEEEEECTTSCTTSSCSEEEEEEECCC--SSCEEEEEECCGGGCSEEEEEE--TTCEEEEEECSSTTCTTCCEEEEE
T ss_pred             CCeEEEEecCCCcccccccCcceeeeeccc--CCceeEEEEcCCCCCcEEEEec--CCCcEEEecCCChHHhcccccccc
Confidence            889999999876         445555544  345777778887  88898888  68999999998877554332    


Q ss_pred             ---------cccCCeeEEEECCC---CCEEEEEeCCCcEEEEEEcCCCee--EEEeccCcCceeEEEEEEecCC----Cc
Q 019349          177 ---------AHQAPLAAIVLSSN---GMYIATASEQGTIIRVFLVSEATK--SYSFRRGTYPSTIFSLSFGQSM----QF  238 (342)
Q Consensus       177 ---------~h~~~v~~i~~s~d---g~~lat~s~dg~~irlwd~~~~~~--~~~~~~~~~~~~v~~l~fs~d~----~~  238 (342)
                               .|...+.+++|+|+   +.+|++++.|+.+ .+|+...++.  +..+.  .+...|.+++|+|++    . 
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~--~h~~~i~~~~~~p~~~~~~~-  231 (351)
T 3f3f_A          156 MKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAI-IYQRGKDGKLHVAAKLP--GHKSLIRSISWAPSIGRWYQ-  231 (351)
T ss_dssp             EESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEE-EEEECTTSCEEEEEECC--CCCSCEEEEEECCCSSCSSE-
T ss_pred             ccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcE-EEEccCCCceeeeeecC--CCCcceeEEEECCCCCCcce-
Confidence                     68889999999997   9999999999975 5788777765  44443  345679999999998    7 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccc--------ccc--------ccc---------cccccccccceee
Q 019349          239 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGS--------ILP--------ESV---------NEVLDPADHHVLR  293 (342)
Q Consensus       239 ~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~--------~~~--------~~~---------~~~~~~~~~~~~~  293 (342)
                        +|++++.||+|++||++.................        ...        ...         ..+.....|...+
T Consensus       232 --~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v  309 (351)
T 3f3f_A          232 --LIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEV  309 (351)
T ss_dssp             --EEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEEEEEECTTSSCE
T ss_pred             --EEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccE
Confidence              8999999999999999875432211000000000        000        000         0111112233344


Q ss_pred             eccCCCccccEEEEEEeCCcEEEEEEecCCC
Q 019349          294 NAFPAGVKRASVSVITYNGYFVEYIFSINNC  324 (342)
Q Consensus       294 ~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~~  324 (342)
                      ..+.+.++++.|++++.||.|++|+++..+.
T Consensus       310 ~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~  340 (351)
T 3f3f_A          310 WSVSWNLTGTILSSAGDDGKVRLWKATYSNE  340 (351)
T ss_dssp             EEEEECSSSCCEEEEETTSCEEEEEECTTSC
T ss_pred             EEEEEcCCCCEEEEecCCCcEEEEecCcCcc
Confidence            5566677778999999999999999876443

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.96  E-value=4.9e-27  Score=211.96  Aligned_cols=243  Identities=10%  Similarity=0.063  Sum_probs=185.3

Q ss_pred             EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc--EEEEEe-cCCceEEEEEcCCe--EEEEE-CCeE
Q 019349           42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT--ALRELN-FLTSILAVRLNKKR--LVIVL-REKT  115 (342)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~--~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i  115 (342)
                      +..+...+..+.+.++++.+++.+.       ++.|++||+.+++  .+..+. +...|.+++|+++.  ++.++ |+.|
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~-------d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i   76 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPN-------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA   76 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECS-------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeC-------CCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeE
Confidence            4445577888888888888877654       8999999999887  677765 45689999998764  44444 7899


Q ss_pred             EEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce---eEEE-ecccCCeeEEEECCCC
Q 019349          116 YIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---HCEI-DAHQAPLAAIVLSSNG  191 (342)
Q Consensus       116 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~---~~~~-~~h~~~v~~i~~s~dg  191 (342)
                      ++||+.+++....+....+...+.++++++++.++++++  .+|.|++||+...+.   ...+ ..|...|++++|+|++
T Consensus        77 ~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~  154 (372)
T 1k8k_C           77 YVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS--GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNS  154 (372)
T ss_dssp             EEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE--TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTS
T ss_pred             EEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEe--CCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCC
Confidence            999999887666665555566788888999999999988  589999999988763   3333 5789999999999999


Q ss_pred             CEEEEEeCCCcEEEEEEc------------------CCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEE
Q 019349          192 MYIATASEQGTIIRVFLV------------------SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHV  253 (342)
Q Consensus       192 ~~lat~s~dg~~irlwd~------------------~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~v  253 (342)
                      ++|++++.||. |++||+                  ..++.+..+..  +...|.+++|+|++.   +|++++.||+|++
T Consensus       155 ~~l~~~~~dg~-i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~---~l~~~~~d~~i~i  228 (372)
T 1k8k_C          155 VLLAAGSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS--SCGWVHGVCFSANGS---RVAWVSHDSTVCL  228 (372)
T ss_dssp             SEEEEEETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC--CSSCEEEEEECSSSS---EEEEEETTTEEEE
T ss_pred             CEEEEEcCCCC-EEEEEcccccccccccccccccccchhhheEecCC--CCCeEEEEEECCCCC---EEEEEeCCCEEEE
Confidence            99999999998 589995                  46777777753  355699999999999   9999999999999


Q ss_pred             EecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          254 FSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       254 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      ||++..+....       +...........|+|              ++. +++++.||.+++|++..
T Consensus       229 ~d~~~~~~~~~-------~~~~~~~v~~~~~~~--------------~~~-~l~~~~d~~i~i~~~~~  274 (372)
T 1k8k_C          229 ADADKKMAVAT-------LASETLPLLAVTFIT--------------ESS-LVAAGHDCFPVLFTYDS  274 (372)
T ss_dssp             EEGGGTTEEEE-------EECSSCCEEEEEEEE--------------TTE-EEEEETTSSCEEEEEET
T ss_pred             EECCCCceeEE-------EccCCCCeEEEEEec--------------CCC-EEEEEeCCeEEEEEccC
Confidence            99987654321       111111111223333              324 45555999999999987

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.6e-27  Score=211.68  Aligned_cols=223  Identities=9%  Similarity=0.077  Sum_probs=165.1

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECC---------CCceeeEEeCCCCCceEEEEe
Q 019349           73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDAN---------TLAILDTIDTVPNLKGLCAFS  142 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~---------~~~~~~~~~~~~~~~~~~~~~  142 (342)
                      .|++|++||+.+++.+..+. ...|.++.+++. ++.++ |++|++|+..         +++.++.+... +...+.+++
T Consensus        56 ~Dg~v~iwd~~~~~~~~~~~-~~~v~~~~~~~~-~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~  132 (343)
T 3lrv_A           56 EDGALHFTQLKDSKTITTIT-TPNPRTGGEHPA-IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD-SANEIIYMY  132 (343)
T ss_dssp             ETTEEEEEEESSSSCEEEEE-EECCCTTCCCCS-EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC-CSSCEEEEE
T ss_pred             CCCcEEEEECCCCcEEEEEe-cCCceeeeeCCc-eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC-CCCCEEEEE
Confidence            49999999999999888776 346777778887 44444 7889888655         55555555432 234678888


Q ss_pred             eCC--CccEEEEeCCCCccEEEEEEccCCceeEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE-EEe
Q 019349          143 PSL--NACFLAVPASTTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS-YSF  218 (342)
Q Consensus       143 ~~~--~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~-~~~  218 (342)
                      ++|  ++.++++++  .||+|++||+++++.+.... .|..+|++++|+|+|.+||+|+.||+ |++||+++++.+ ..+
T Consensus       133 ~~~~~~~~~l~s~s--~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~-i~iwd~~~~~~~~~~~  209 (343)
T 3lrv_A          133 GHNEVNTEYFIWAD--NRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGI-LDVYNLSSPDQASSRF  209 (343)
T ss_dssp             CCC---CCEEEEEE--TTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSC-EEEEESSCTTSCCEEC
T ss_pred             cCCCCCCCEEEEEe--CCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCE-EEEEECCCCCCCccEE
Confidence            888  889999888  68999999999998876664 45668999999999999999999998 589999999887 677


Q ss_pred             ccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCC
Q 019349          219 RRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPA  298 (342)
Q Consensus       219 ~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (342)
                      .. .+...|.+++|+|++.   +|++++ |++|++||++..+..........   ...+  ..   .        ..+.+
T Consensus       210 ~~-~h~~~v~~l~fs~~g~---~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~---~~~~--~~---~--------~~~~~  268 (343)
T 3lrv_A          210 PV-DEEAKIKEVKFADNGY---WMVVEC-DQTVVCFDLRKDVGTLAYPTYTI---PEFK--TG---T--------VTYDI  268 (343)
T ss_dssp             CC-CTTSCEEEEEECTTSS---EEEEEE-SSBEEEEETTSSTTCBSSCCCBC----------C---C--------EEEEE
T ss_pred             ec-cCCCCEEEEEEeCCCC---EEEEEe-CCeEEEEEcCCCCcceeeccccc---cccc--cc---c--------eEEEE
Confidence            54 2456799999999999   999999 45999999988765432111000   0000  00   0        11233


Q ss_pred             CccccEEEEEEe-CCcEEEEEEecC
Q 019349          299 GVKRASVSVITY-NGYFVEYIFSIN  322 (342)
Q Consensus       299 ~~~~~~l~~~~~-dg~v~~~~~~~~  322 (342)
                      .+.+.+|++++. |+.+++|+++..
T Consensus       269 ~~~g~~l~~~s~~d~~i~v~~~~~~  293 (343)
T 3lrv_A          269 DDSGKNMIAYSNESNSLTIYKFDKK  293 (343)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCCCEEEEecCCCCcEEEEEEccc
Confidence            444589999999 999999998643

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=4.5e-25  Score=200.97  Aligned_cols=237  Identities=12%  Similarity=0.088  Sum_probs=190.2

Q ss_pred             CCCeEEEEEcCCCCEE-EEEcCCc-EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            7 SYPVFFVSFNQDNSGF-ALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~l-a~g~~~g-~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      ...+.+++|+|++++| ++++.++ +++||+.+++.+..... ..+..+.+.++++.+++++.      .+++|++||+.
T Consensus        31 ~~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~------~~~~v~v~d~~  104 (391)
T 1l0q_A           31 GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNM------ASSTLSVIDTT  104 (391)
T ss_dssp             SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET------TTTEEEEEETT
T ss_pred             CCCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCccceEECCCCCEEEEEEC------CCCEEEEEECC
Confidence            3468999999999987 5665554 79999999987765543 46667788888888877765      47999999999


Q ss_pred             CCcEEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349           84 TGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        84 ~~~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      +++.+..+.....+.+++++++.  ++++.  ++.|++||+.+++.+..+..+..   ...++++|++..+++++. .++
T Consensus       105 ~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~~~~dg~~l~~~~~-~~~  180 (391)
T 1l0q_A          105 SNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS---PKGIAVTPDGTKVYVANF-DSM  180 (391)
T ss_dssp             TTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS---EEEEEECTTSSEEEEEET-TTT
T ss_pred             CCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC---cceEEECCCCCEEEEEeC-CCC
Confidence            99999888888889999998874  43444  78999999999998888876433   466777888877754443 589


Q ss_pred             EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe---CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349          160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS---EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  236 (342)
Q Consensus       160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s---~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (342)
                      .|++||+++++.+..+. |...+.+++|+|+|++|++++   .++. |++||+.+++.+..+..+   ..+.+++|+|++
T Consensus       181 ~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~-v~~~d~~~~~~~~~~~~~---~~~~~~~~s~dg  255 (391)
T 1l0q_A          181 SISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPVG---PDPAGIAVTPDG  255 (391)
T ss_dssp             EEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEECC---SSEEEEEECTTS
T ss_pred             EEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCc-EEEEECCCCeEEEEEecC---CCccEEEEccCC
Confidence            99999999998877775 456789999999999999988   5776 589999999988877543   247889999999


Q ss_pred             CcccEE-EEEeCCCcEEEEecCCCCC
Q 019349          237 QFQDIL-VATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       237 ~~~~~l-~~~s~dg~i~vwd~~~~~~  261 (342)
                      +   +| ++++.|++|++||+++.+.
T Consensus       256 ~---~l~~s~~~d~~v~v~d~~~~~~  278 (391)
T 1l0q_A          256 K---KVYVALSFXNTVSVIDTATNTI  278 (391)
T ss_dssp             S---EEEEEETTTTEEEEEETTTTEE
T ss_pred             C---EEEEEcCCCCEEEEEECCCCcE
Confidence            8   66 6678899999999987654

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.96  E-value=9.4e-27  Score=204.59  Aligned_cols=176  Identities=12%  Similarity=0.069  Sum_probs=131.5

Q ss_pred             CCCeEEEEEC-CCCcEEEEEec-CCceEEEEEcC-----CeEEEEE-CCeEEEEECCCCceeeEEeCCCC-CceEEEEee
Q 019349           73 SPRRLCLFNT-TTGTALRELNF-LTSILAVRLNK-----KRLVIVL-REKTYIYDANTLAILDTIDTVPN-LKGLCAFSP  143 (342)
Q Consensus        73 ~d~~i~iwd~-~~~~~~~~~~~-~~~v~~i~~~~-----~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~  143 (342)
                      .+++|++|++ .+|+.+..+.. ...+..++|++     +.++.++ |++|+|||+.++++++++..+.. ...++++++
T Consensus       155 ~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vaf  234 (356)
T 2w18_A          155 SDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAY  234 (356)
T ss_dssp             TTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEE
T ss_pred             CCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEE
Confidence            5899999999 45887776554 34666666655     3444445 89999999999999999975443 345555566


Q ss_pred             CCCccEEEE-----------eCCCCccEEEEEEccCCceeEEE-----ecccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349          144 SLNACFLAV-----------PASTTKGSVLVYNVMELHSHCEI-----DAHQAPLAAIVLSSNGMYIATASEQGTIIRVF  207 (342)
Q Consensus       144 ~~~~~~l~~-----------~~~~~~g~i~iwd~~~~~~~~~~-----~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw  207 (342)
                      +|++.++++           +|+ .|++|++||..+++.+..+     .+|...+.+..++  +.++|+|+.||+ ||||
T Consensus       235 SpdG~~lvs~s~~~~~w~laSGs-~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgT-IkIW  310 (356)
T 2w18_A          235 SEMGLLFIVLSHPCAKESESLRS-PVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGT-IAIW  310 (356)
T ss_dssp             EETTEEEEEEC-------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSC-EEEE
T ss_pred             CCCCCEEEEeccCCCcceeeccC-CCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCc-EEEE
Confidence            667766632           233 6899999999999887665     3676665544444  889999999998 5999


Q ss_pred             EcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349          208 LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       208 d~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      |+.+|+.+.++..+ ....+.+++||||++   +|++|+.|++|+|||+
T Consensus       311 Dl~tGk~l~tL~gH-~~~vvs~vafSPDG~---~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          311 DLLLGQCTALLPPV-SDQHWSFVKWSGTDS---HLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             ETTTCSEEEEECCC---CCCCEEEECSSSS---EEEEECTTSCEEEEEE
T ss_pred             ECCCCcEEEEecCC-CCCeEEEEEECCCCC---EEEEEECCCcEEEecC
Confidence            99999999998643 222345689999999   9999999999999996

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=3.1e-28  Score=220.87  Aligned_cols=239  Identities=14%  Similarity=0.139  Sum_probs=169.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc---EEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR---LCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~---~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      ..+..+|.+++|+|++++|++|+.++ +++||+.+++   ....  .+...+..+.+.++++.++.++.       |++|
T Consensus        52 ~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-------d~~i  124 (377)
T 3dwl_C           52 SDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSG-------ARVI  124 (377)
T ss_dssp             CCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEES-------SSCE
T ss_pred             ecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEec-------CCeE
Confidence            46788999999999999999998876 7999998876   3332  34467777788777777777764       8999


Q ss_pred             EEEECCCCcE---EEEEe--cCCceEEEEEcCCe--EEEEE-CCeEEEEECCC------------------CceeeEEeC
Q 019349           78 CLFNTTTGTA---LRELN--FLTSILAVRLNKKR--LVIVL-REKTYIYDANT------------------LAILDTIDT  131 (342)
Q Consensus        78 ~iwd~~~~~~---~~~~~--~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~------------------~~~~~~~~~  131 (342)
                      ++||+.+++.   ...+.  +...|.+++|+++.  ++.++ |+.|++||+..                  ++++..+  
T Consensus       125 ~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  202 (377)
T 3dwl_C          125 SVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY--  202 (377)
T ss_dssp             EECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC--
T ss_pred             EEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc--
Confidence            9999998873   55555  56689999999875  33344 88999999853                  2233333  


Q ss_pred             CCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce----eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349          132 VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS----HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF  207 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~----~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw  207 (342)
                       .+...+.+++++|++.+|++++  .||.|++||+.+++.    +..+.+|..+|.+++|+|+|++|++|+.++ ++ +|
T Consensus       203 -~~~~~v~~~~~sp~~~~l~~~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~-~~-~~  277 (377)
T 3dwl_C          203 -PSGGWVHAVGFSPSGNALAYAG--HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYS-PI-LL  277 (377)
T ss_dssp             -CCSSSEEEEEECTTSSCEEEEE--TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSS-EE-EE
T ss_pred             -cCCceEEEEEECCCCCEEEEEe--CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCc-EE-EE
Confidence             3445688888899999999888  689999999999887    788899999999999999999999998776 44 67


Q ss_pred             EcCCCe-e--------------------------E---------EEec--------------cCcCceeEEEEEEecCCC
Q 019349          208 LVSEAT-K--------------------------S---------YSFR--------------RGTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       208 d~~~~~-~--------------------------~---------~~~~--------------~~~~~~~v~~l~fs~d~~  237 (342)
                      +...+. .                          .         ..+.              ...|...|.++++.++..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~  357 (377)
T 3dwl_C          278 QGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTP  357 (377)
T ss_dssp             CCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEET
T ss_pred             EeCCCceEEEeeecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCC
Confidence            665221 0                          0         0010              001445699999776553


Q ss_pred             c-ccEEEEEeCCCcEEEEec
Q 019349          238 F-QDILVATSSSGSLHVFSP  256 (342)
Q Consensus       238 ~-~~~l~~~s~dg~i~vwd~  256 (342)
                      . ...|++++.||+|+|||+
T Consensus       358 ~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          358 GNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             TEEEEEEEEETTSEEEEECC
T ss_pred             CceEEEEeecCCCcEEEecC
Confidence            0 014999999999999985

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.96  E-value=1.1e-26  Score=215.21  Aligned_cols=253  Identities=13%  Similarity=0.116  Sum_probs=174.9

Q ss_pred             eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc-----------EEEEEec-C------------CceEEEE
Q 019349           46 VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT-----------ALRELNF-L------------TSILAVR  101 (342)
Q Consensus        46 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~-----------~~~~~~~-~------------~~v~~i~  101 (342)
                      .+.+..+.+.++++++++.+.       |+.|++||+.+++           ....+.. .            ..|.+++
T Consensus        28 ~~~V~~v~~s~~g~~la~g~~-------dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~  100 (447)
T 3dw8_B           28 ADIISTVEFNHSGELLATGDK-------GGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIR  100 (447)
T ss_dssp             GGSEEEEEECSSSSEEEEEET-------TSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEE
T ss_pred             cCcEEEEEECCCCCEEEEEcC-------CCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEE
Confidence            467888899888888887764       8999999998876           3555543 3            6799999


Q ss_pred             EcCCe----EEEEE-CCeEEEEECCCCceee---------------------------------------EEeCCCCCce
Q 019349          102 LNKKR----LVIVL-REKTYIYDANTLAILD---------------------------------------TIDTVPNLKG  137 (342)
Q Consensus       102 ~~~~~----~~~~~-d~~i~i~d~~~~~~~~---------------------------------------~~~~~~~~~~  137 (342)
                      |+++.    ++.++ |+.|++||+.+++...                                       .+ ...+...
T Consensus       101 ~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~  179 (447)
T 3dw8_B          101 WLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIF-ANAHTYH  179 (447)
T ss_dssp             ECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEE-CSCCSSC
T ss_pred             EcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEe-ccCCCcc
Confidence            99874    44444 8899999997643311                                       11 1234455


Q ss_pred             EEEEeeCCCccEEEEeCCCCccEEEEEEccC-CceeE-------EEecccCCeeEEEECCCC-CEEEEEeCCCcEEEEEE
Q 019349          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVME-LHSHC-------EIDAHQAPLAAIVLSSNG-MYIATASEQGTIIRVFL  208 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~-~~~~~-------~~~~h~~~v~~i~~s~dg-~~lat~s~dg~~irlwd  208 (342)
                      +.+++++|++.+++++ .  ||.|++||+.+ .+.+.       .+.+|...|++++|+|++ ++|++|+.||+ |++||
T Consensus       180 v~~~~~~~~~~~l~s~-~--d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~-i~iwd  255 (447)
T 3dw8_B          180 INSISINSDYETYLSA-D--DLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGT-IRLCD  255 (447)
T ss_dssp             CCEEEECTTSSEEEEE-C--SSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSC-EEEEE
T ss_pred             eEEEEEcCCCCEEEEe-C--CCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCe-EEEEE
Confidence            7778888888899886 3  89999999984 34444       256899999999999999 99999999998 58999


Q ss_pred             cCCCee----EEEeccCcCc----------eeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC-CCCCCCCCCcccccc
Q 019349          209 VSEATK----SYSFRRGTYP----------STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF-AINQRRGGRTSSILG  273 (342)
Q Consensus       209 ~~~~~~----~~~~~~~~~~----------~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~-~~~~~~~~~~~~~~~  273 (342)
                      +++++.    +..+..+..+          ..|.+++|+|+++   +|++++. ++|+|||++. .........+.....
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~---~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~  331 (447)
T 3dw8_B          256 MRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGR---YMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS  331 (447)
T ss_dssp             TTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSS---EEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred             CcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCC---EEEEeeC-CeEEEEeCCCCccccceeeccccccc
Confidence            999886    5666533210          2699999999999   9999999 9999999986 443332111111000


Q ss_pred             ccccc-cccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          274 SILPE-SVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       274 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      ..... ...++++       ...+.+.+++++|++++.||.|++|++..
T Consensus       332 ~l~~~~~~~~i~~-------~~~~~~s~~~~~l~s~s~dg~v~iwd~~~  373 (447)
T 3dw8_B          332 KLCSLYENDCIFD-------KFECCWNGSDSVVMTGSYNNFFRMFDRNT  373 (447)
T ss_dssp             THHHHHHTSGGGC-------CCCEEECTTSSEEEEECSTTEEEEEETTT
T ss_pred             ccccccccccccc-------ceEEEECCCCCEEEEeccCCEEEEEEcCC
Confidence            00000 0000000       01123344558999999999999998654

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1e-25  Score=205.20  Aligned_cols=262  Identities=10%  Similarity=0.096  Sum_probs=196.8

Q ss_pred             CEEEEEcCCc-EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCce
Q 019349           20 SGFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI   97 (342)
Q Consensus        20 ~~la~g~~~g-~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v   97 (342)
                      ..+++++.++ +++||+.+++.+..... ..+..+.+.++++.+++.+.      .+++|++||+.+++.+..+..+..+
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~d~~i~v~d~~~~~~~~~~~~~~~v   76 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANA------HSNDVSIIDTATNNVIATVPAGSSP   76 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCCCcceEEECCCCCEEEEECC------CCCeEEEEECCCCeEEEEEECCCCc
Confidence            3467777666 69999999987665443 45667778788887766654      3899999999999999999888899


Q ss_pred             EEEEEcCCe--EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeE
Q 019349           98 LAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC  173 (342)
Q Consensus        98 ~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~  173 (342)
                      .+++++++.  ++++.  ++.|++||+.+++.+..+..+.   .+.++++++++..+++++. .++.|++||+.+++.+.
T Consensus        77 ~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~-~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGK---SPLGLALSPDGKKLYVTNN-GDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEET-TTTEEEEEETTTTEEEE
T ss_pred             cceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCC---CcceEEECCCCCEEEEEeC-CCCEEEEEECCCCcEEE
Confidence            999999864  44444  5899999999998888876543   3567788888887754443 58999999999999888


Q ss_pred             EEecccCCeeEEEECCCCCEE-EEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe---CCC
Q 019349          174 EIDAHQAPLAAIVLSSNGMYI-ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS---SSG  249 (342)
Q Consensus       174 ~~~~h~~~v~~i~~s~dg~~l-at~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s---~dg  249 (342)
                      .+..|. .+.+++|+|+|++| ++++.|++ |++||+++++.+..+..   ...+.+++|+|+++   +|++++   .++
T Consensus       153 ~~~~~~-~~~~~~~~~dg~~l~~~~~~~~~-v~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~---~l~~~~~~~~~~  224 (391)
T 1l0q_A          153 TVSVGR-SPKGIAVTPDGTKVYVANFDSMS-ISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGT---KAYVTNVDKYFN  224 (391)
T ss_dssp             EEECCS-SEEEEEECTTSSEEEEEETTTTE-EEEEETTTTEEEEEEEC---SSEEEEEEECTTSS---EEEEEEECSSCC
T ss_pred             EEecCC-CcceEEECCCCCEEEEEeCCCCE-EEEEECCCCeEEEEEec---CCCccceEECCCCC---EEEEEecCcCCC
Confidence            887764 46999999999988 56677776 58999999988777642   34588999999998   888887   689


Q ss_pred             cEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEE-EEEEeCCcEEEEEEec
Q 019349          250 SLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV-SVITYNGYFVEYIFSI  321 (342)
Q Consensus       250 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~dg~v~~~~~~~  321 (342)
                      .|++||+++.+....       +... .......|+|              ++++| ++++.||.+++|++..
T Consensus       225 ~v~~~d~~~~~~~~~-------~~~~-~~~~~~~~s~--------------dg~~l~~s~~~d~~v~v~d~~~  275 (391)
T 1l0q_A          225 TVSMIDTGTNKITAR-------IPVG-PDPAGIAVTP--------------DGKKVYVALSFXNTVSVIDTAT  275 (391)
T ss_dssp             EEEEEETTTTEEEEE-------EECC-SSEEEEEECT--------------TSSEEEEEETTTTEEEEEETTT
T ss_pred             cEEEEECCCCeEEEE-------EecC-CCccEEEEcc--------------CCCEEEEEcCCCCEEEEEECCC
Confidence            999999987643221       0000 0011123343              44667 4556799999997643

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.96  E-value=5.2e-26  Score=207.48  Aligned_cols=244  Identities=17%  Similarity=0.137  Sum_probs=180.9

Q ss_pred             CCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEeCCCCcEEEEEe-eCCEEEEEEcCCCC---eEEEEcCCCCCCCCCCeEE
Q 019349            5 SSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYERA-VGAFSIVEMLYSSS---LLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         5 ~~~~~V~~l~fs~-d~~~la~g~~~g-~~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~~~g~~~~~~d~~i~   78 (342)
                      .+..+|.+++|+| ++.+|++++.++ +++||+.+++...... ...+..+.+.+...   .++..+       .++.|+
T Consensus        97 ~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~  169 (408)
T 4a11_B           97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGT-------RGPKVQ  169 (408)
T ss_dssp             CCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEE-------SSSSEE
T ss_pred             cCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEc-------CCCeEE
Confidence            4788999999999 777899888776 6999999987765543 35566666665432   555444       489999


Q ss_pred             EEECCCCcEEEEEe-cCCceEEEEEcCCe---EEEEE-CCeEEEEECCCCc-eeeEEeC-------------CCCCceEE
Q 019349           79 LFNTTTGTALRELN-FLTSILAVRLNKKR---LVIVL-REKTYIYDANTLA-ILDTIDT-------------VPNLKGLC  139 (342)
Q Consensus        79 iwd~~~~~~~~~~~-~~~~v~~i~~~~~~---~~~~~-d~~i~i~d~~~~~-~~~~~~~-------------~~~~~~~~  139 (342)
                      +||+.+++.+..+. +...|.+++++++.   ++.+. |+.|++||++++. .+..+..             ..+...+.
T Consensus       170 ~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  249 (408)
T 4a11_B          170 LCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVN  249 (408)
T ss_dssp             EEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEE
T ss_pred             EEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCcee
Confidence            99999999888876 45689999999875   33444 8899999998764 3333321             12345678


Q ss_pred             EEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecc-----cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee
Q 019349          140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAH-----QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK  214 (342)
Q Consensus       140 ~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h-----~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~  214 (342)
                      +++++|++.++++++  .||.|++||+.+++....+..+     ...+........+..+++++.|+. |++||+.+++.
T Consensus       250 ~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~v~d~~~~~~  326 (408)
T 4a11_B          250 GLCFTSDGLHLLTVG--TDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGST-IAVYTVYSGEQ  326 (408)
T ss_dssp             EEEECTTSSEEEEEE--TTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTE-EEEEETTTCCE
T ss_pred             EEEEcCCCCEEEEec--CCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCE-EEEEECcCCcc
Confidence            888899999999888  5899999999988765444322     122233333344566777777887 58999999999


Q ss_pred             EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          215 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      +..+..+  ...|.+++|+|+++   +|++++.||.|++||++..+...
T Consensus       327 ~~~~~~~--~~~v~~~~~s~~~~---~l~s~~~dg~i~iw~~~~~~~~~  370 (408)
T 4a11_B          327 ITMLKGH--YKTVDCCVFQSNFQ---ELYSGSRDCNILAWVPSLYEPVP  370 (408)
T ss_dssp             EEEECCC--SSCEEEEEEETTTT---EEEEEETTSCEEEEEECC-----
T ss_pred             eeeeccC--CCeEEEEEEcCCCC---EEEEECCCCeEEEEeCCCCCccC
Confidence            9988643  56799999999999   99999999999999999876543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1.6e-26  Score=213.95  Aligned_cols=239  Identities=12%  Similarity=0.123  Sum_probs=181.4

Q ss_pred             CCCCCeEEEEEcCC-CCEEEEEcCCc-EEEEeCCC----------CcEE--EEEeeCCEEEEEEcCCCC-eEEEEcCCCC
Q 019349            5 SSSYPVFFVSFNQD-NSGFALSTKDG-FKIFDSST----------GRLC--YERAVGAFSIVEMLYSSS-LLAIVGAGEQ   69 (342)
Q Consensus         5 ~~~~~V~~l~fs~d-~~~la~g~~~g-~~v~d~~~----------~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~g~~   69 (342)
                      .+...|++++|+|+ +.+|++|+.+| +++|++.+          .+..  +..+...+..+.+.+... .++.++    
T Consensus       126 ~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----  201 (430)
T 2xyi_A          126 NHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS----  201 (430)
T ss_dssp             EESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC----
T ss_pred             cCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe----
Confidence            45678999999998 67889998887 79999875          3333  334455666778877766 554443    


Q ss_pred             CCCCCCeEEEEECCCCcE-------EEEE-ecCCceEEEEEcC-C--eEEEEE-CCeEEEEECCCC---ceeeEEeCCCC
Q 019349           70 PSLSPRRLCLFNTTTGTA-------LREL-NFLTSILAVRLNK-K--RLVIVL-REKTYIYDANTL---AILDTIDTVPN  134 (342)
Q Consensus        70 ~~~~d~~i~iwd~~~~~~-------~~~~-~~~~~v~~i~~~~-~--~~~~~~-d~~i~i~d~~~~---~~~~~~~~~~~  134 (342)
                         .|++|++||+.++..       ...+ .+...|.+++|++ +  .++.++ |+.|++||++++   +.+..+..+. 
T Consensus       202 ---~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~-  277 (430)
T 2xyi_A          202 ---DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT-  277 (430)
T ss_dssp             ---TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS-
T ss_pred             ---CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC-
Confidence               489999999987432       2233 3455899999987 2  333444 889999999876   4666665443 


Q ss_pred             CceEEEEeeCCCcc-EEEEeCCCCccEEEEEEccC-CceeEEEecccCCeeEEEECCCCC-EEEEEeCCCcEEEEEEcCC
Q 019349          135 LKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVME-LHSHCEIDAHQAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       135 ~~~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~-~~~~~~~~~h~~~v~~i~~s~dg~-~lat~s~dg~~irlwd~~~  211 (342)
                       ..+.+++++|++. ++++++  .||.|++||+++ .+++..+..|..+|++++|+|+++ +|++++.||+ |++||+..
T Consensus       278 -~~v~~i~~~p~~~~~l~tg~--~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~-i~iwd~~~  353 (430)
T 2xyi_A          278 -AEVNCLSFNPYSEFILATGS--ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRR-LHVWDLSK  353 (430)
T ss_dssp             -SCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSC-CEEEEGGG
T ss_pred             -CCeEEEEeCCCCCCEEEEEe--CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCc-EEEEeCCC
Confidence             4577778888776 566666  689999999998 567888999999999999999985 7999999998 58999987


Q ss_pred             --------------CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          212 --------------ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       212 --------------~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                                    .+.+..+.  .+...|.+++|+|++..  +|++++.||.|+||++...
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~~--~h~~~v~~~~~~p~~~~--~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          354 IGEEQSTEDAEDGPPELLFIHG--GHTAKISDFSWNPNEPW--IICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             TTCCCCHHHHHHCCTTEEEECC--CCSSCEEEEEECSSSTT--EEEEEETTSEEEEEEECHH
T ss_pred             CccccCccccccCCcceEEEcC--CCCCCceEEEECCCCCC--EEEEEECCCCEEEeEcccc
Confidence                          24445443  23456999999999863  7999999999999998754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=1.9e-27  Score=220.49  Aligned_cols=243  Identities=16%  Similarity=0.110  Sum_probs=175.5

Q ss_pred             CCCCCCeEEEEEcC-CCCEEEEEcCCc-EEEEeCCCCcEEEEEee--C--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349            4 QSSSYPVFFVSFNQ-DNSGFALSTKDG-FKIFDSSTGRLCYERAV--G--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         4 ~~~~~~V~~l~fs~-d~~~la~g~~~g-~~v~d~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      ..|..+|++|+|+| ++++|++|+.|+ +++||+.+.........  .  .+..+.+.++++.++..+       .|++|
T Consensus       161 ~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-------~dg~i  233 (435)
T 4e54_B          161 IGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGD-------NVGNV  233 (435)
T ss_dssp             CSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEEC-------SSSBE
T ss_pred             cCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEe-------CCCcE
Confidence            45788999999998 688999998887 69999987654332221  2  234456667777776655       48999


Q ss_pred             EEEECCCCcEEEEEe-cCCceEEEEEcCCe--EE-EEE-CCeEEEEECCCCceeeEEe-CCCCCceEEEEeeCCCccEEE
Q 019349           78 CLFNTTTGTALRELN-FLTSILAVRLNKKR--LV-IVL-REKTYIYDANTLAILDTID-TVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~-~~~-d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      ++||++. +.+..+. +...|.+++|+++.  ++ .++ |+.|++||+++.+....+. ...+...+.+++++|++.+|+
T Consensus       234 ~~wd~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~  312 (435)
T 4e54_B          234 ILLNMDG-KELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLL  312 (435)
T ss_dssp             EEEESSS-CBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEE
T ss_pred             eeeccCc-ceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeE
Confidence            9999865 4444444 45689999998753  33 344 8899999998876544332 223445688889999999999


Q ss_pred             EeCCCCccEEEEEEccCCceeEEEecccC------CeeEEEECCCCCEEEEEeC-----------CCcEEEEEEcCCCee
Q 019349          152 VPASTTKGSVLVYNVMELHSHCEIDAHQA------PLAAIVLSSNGMYIATASE-----------QGTIIRVFLVSEATK  214 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~~~~~~~~~h~~------~v~~i~~s~dg~~lat~s~-----------dg~~irlwd~~~~~~  214 (342)
                      +++  .||.|++||+.+++....+..|..      .+....|+|++.++++++.           ++..|++||..+++.
T Consensus       313 s~~--~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~  390 (435)
T 4e54_B          313 TTD--QKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKM  390 (435)
T ss_dssp             EEE--SSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCE
T ss_pred             EEc--CCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcE
Confidence            988  689999999999988777766543      2334567777777776642           333479999999999


Q ss_pred             EEEeccCcCceeEEEE-EEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          215 SYSFRRGTYPSTIFSL-SFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       215 ~~~~~~~~~~~~v~~l-~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +..+..+ +...|.++ +|+|++.   +|++|+ |++|+||+++.++.
T Consensus       391 ~~~l~~~-~~~~v~s~~~fspdg~---~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          391 MCQLYDP-ESSGISSLNEFNPMGD---TLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             EEEECCS-SCCCCCCEEEECTTSS---CEEEEC-SSEEEECCCC----
T ss_pred             EEEEeCC-CCCcEEEEEEECCCCC---EEEEEc-CCcEEEEECCcCee
Confidence            8887544 34457776 6999999   888776 78999999987654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.95  E-value=3.3e-26  Score=211.90  Aligned_cols=255  Identities=13%  Similarity=0.178  Sum_probs=175.2

Q ss_pred             eeCCEEEEEEcCC-CCeEEEEcCCCCCCCCCCeEEEEECCC----------CcEEEEEe-cCCceEEEEEcCCe--EEE-
Q 019349           45 AVGAFSIVEMLYS-SSLLAIVGAGEQPSLSPRRLCLFNTTT----------GTALRELN-FLTSILAVRLNKKR--LVI-  109 (342)
Q Consensus        45 ~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~d~~i~iwd~~~----------~~~~~~~~-~~~~v~~i~~~~~~--~~~-  109 (342)
                      +.+.+..+.+.+. .+++++.+       .++.|++||+.+          .+.+..+. +...|.+++|+++.  .++ 
T Consensus       127 h~~~v~~l~~~p~~~~~lat~~-------~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s  199 (430)
T 2xyi_A          127 HEGEVNRARYMPQNACVIATKT-------PSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLS  199 (430)
T ss_dssp             ESSCCSEEEEETTEEEEEEEEC-------SSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEE
T ss_pred             CCCcEEEEEECCCCCcEEEEEC-------CCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEE
Confidence            4456666777665 34444443       489999999976          45555554 45589999998863  333 


Q ss_pred             EE-CCeEEEEECCCCce-------eeEEeCCCCCceEEEEeeCC-CccEEEEeCCCCccEEEEEEccCC---ceeEEEec
Q 019349          110 VL-REKTYIYDANTLAI-------LDTIDTVPNLKGLCAFSPSL-NACFLAVPASTTKGSVLVYNVMEL---HSHCEIDA  177 (342)
Q Consensus       110 ~~-d~~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~g~i~iwd~~~~---~~~~~~~~  177 (342)
                      +. |+.|++|++..+..       ...+..  +...+.+++++| ++.++++++  .+|.|++||++++   +.+..+.+
T Consensus       200 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~~l~s~~--~dg~i~i~d~~~~~~~~~~~~~~~  275 (430)
T 2xyi_A          200 ASDDHTICLWDINATPKEHRVIDAKNIFTG--HTAVVEDVAWHLLHESLFGSVA--DDQKLMIWDTRNNNTSKPSHTVDA  275 (430)
T ss_dssp             ECTTSCEEEEETTSCCBGGGEEECSEEECC--CSSCEEEEEECSSCTTEEEEEE--TTSEEEEEETTCSCSSSCSEEEEC
T ss_pred             EeCCCeEEEEeCCCCCCCCceeccceeecC--CCCCEeeeEEeCCCCCEEEEEe--CCCeEEEEECCCCCCCcceeEeec
Confidence            33 88999999987422       233333  334577777777 566777777  5899999999987   57778889


Q ss_pred             ccCCeeEEEECCCCC-EEEEEeCCCcEEEEEEcCC-CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          178 HQAPLAAIVLSSNGM-YIATASEQGTIIRVFLVSE-ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       178 h~~~v~~i~~s~dg~-~lat~s~dg~~irlwd~~~-~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      |..+|++|+|+|++. +|++|+.||+ |++||+++ ++.+..+..+  ...|.+++|+|+++  .+|++++.||+|+|||
T Consensus       276 ~~~~v~~i~~~p~~~~~l~tg~~dg~-v~vwd~~~~~~~~~~~~~h--~~~v~~i~~sp~~~--~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          276 HTAEVNCLSFNPYSEFILATGSADKT-VALWDLRNLKLKLHSFESH--KDEIFQVQWSPHNE--TILASSGTDRRLHVWD  350 (430)
T ss_dssp             CSSCEEEEEECSSCTTEEEEEETTSE-EEEEETTCTTSCSEEEECC--SSCEEEEEECSSCT--TEEEEEETTSCCEEEE
T ss_pred             CCCCeEEEEeCCCCCCEEEEEeCCCe-EEEEeCCCCCCCeEEeecC--CCCEEEEEECCCCC--CEEEEEeCCCcEEEEe
Confidence            999999999999987 7999999997 58999998 5566777543  55799999999985  2799999999999999


Q ss_pred             cCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCcccc-EEEEEEeCCcEEEEEEecC
Q 019349          256 PGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRA-SVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~dg~v~~~~~~~~  322 (342)
                      +............    ....+.   .+.....|...+..+.+.+.++ .|++++.||.|++|+++..
T Consensus       351 ~~~~~~~~~~~~~----~~~~~~---~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          351 LSKIGEEQSTEDA----EDGPPE---LLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             GGGTTCCCCHHHH----HHCCTT---EEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCccccCcccc----ccCCcc---eEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            9874322110000    000000   0111111111222333344446 7999999999999998643

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=2.9e-25  Score=204.94  Aligned_cols=273  Identities=11%  Similarity=0.040  Sum_probs=199.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE-------eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER-------AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      ..+.+++|+|++.++++++.++ +++||+.+++.....       +.+.+..+.+..++..++..+       .++.|++
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~-------~d~~v~~  195 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQM-------QANAVHV  195 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEG-------GGTEEEE
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEEC-------CCCEEEE
Confidence            4466899999777777777665 899999998776432       123455566655555554444       3899999


Q ss_pred             EECCCCcEEEEEec-CCceEEEEEcCCe--EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           80 FNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        80 wd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      ||+.+++.+..+.. ...+.+++++++.  ++++.  ++.|++||+.+++.+..+..+   ..+.+++++|++..+++++
T Consensus       196 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~  272 (433)
T 3bws_A          196 FDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKI---GLPRGLLLSKDGKELYIAQ  272 (433)
T ss_dssp             EETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCC---SEEEEEEECTTSSEEEEEE
T ss_pred             EECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCC---CCceEEEEcCCCCEEEEEE
Confidence            99999999888864 4589999998764  44455  689999999999887776542   3477788888888887765


Q ss_pred             CC------CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEE-EEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE
Q 019349          155 ST------TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYI-ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  227 (342)
Q Consensus       155 ~~------~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~l-at~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v  227 (342)
                      ..      .+|.|++||+.+++.+..+ .|...+.+++|+|+|+.| ++++.|++ +++||+.+++.+..+..   ...+
T Consensus       273 ~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~-v~v~d~~~~~~~~~~~~---~~~~  347 (433)
T 3bws_A          273 FSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDMCCSK-IEVYDLKEKKVQKSIPV---FDKP  347 (433)
T ss_dssp             EESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEETTTTE-EEEEETTTTEEEEEEEC---SSSE
T ss_pred             CCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEecCCCE-EEEEECCCCcEEEEecC---CCCC
Confidence            21      2789999999998876655 466689999999999755 66678887 58999999988877742   3458


Q ss_pred             EEEEEecCCCcccEEEEEeC---------------CCcEEEEecCCCCCCCCCCCcccccccccccccccccccccccee
Q 019349          228 FSLSFGQSMQFQDILVATSS---------------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVL  292 (342)
Q Consensus       228 ~~l~fs~d~~~~~~l~~~s~---------------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (342)
                      .+++|+|+++   +|++++.               ||.|++||+++.+....       +.. ........|        
T Consensus       348 ~~~~~s~dg~---~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~-------~~~-~~~~~~~~~--------  408 (433)
T 3bws_A          348 NTIALSPDGK---YLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEF-------WEA-GNQPTGLDV--------  408 (433)
T ss_dssp             EEEEECTTSS---EEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEE-------EEC-SSSEEEEEE--------
T ss_pred             CeEEEcCCCC---EEEEEecCCCccccccccccccceEEEEEECCCCcEEEE-------ecC-CCCCceEEE--------
Confidence            8999999998   8888876               57999999987653221       000 000111233        


Q ss_pred             eeccCCCccccEEEEEEe-CCcEEEEEEe
Q 019349          293 RNAFPAGVKRASVSVITY-NGYFVEYIFS  320 (342)
Q Consensus       293 ~~~~~~~~~~~~l~~~~~-dg~v~~~~~~  320 (342)
                            .++++.|++++. ||.+++|+++
T Consensus       409 ------s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          409 ------SPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             ------CTTSCEEEEEETTTTEEEEEEET
T ss_pred             ------cCCCCEEEEEECCCCeEEEEEec
Confidence                  344478888886 9999999875

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.95  E-value=8.6e-26  Score=204.71  Aligned_cols=197  Identities=14%  Similarity=0.200  Sum_probs=152.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc--CCc-EEEEeCCCCcEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALST--KDG-FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~--~~g-~~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      .++..+++++|||||++|++++  .++ ++|||+.+++.++... .+.+..+.+.+++++++.++        ++.+++|
T Consensus       131 ~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~~v~fspdg~~l~s~s--------~~~~~~~  202 (365)
T 4h5i_A          131 NADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVKDLHFSTDGKVVAYIT--------GSSLEVI  202 (365)
T ss_dssp             CTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCCEEEECTTSSEEEEEC--------SSCEEEE
T ss_pred             CcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceEEEEEccCCceEEecc--------ceeEEEE
Confidence            3455689999999999987654  455 6999999998776653 35677788888888887765        4578888


Q ss_pred             ECCCCcEEEEEe---cCCceEEEEEcCCeEEEE--E-CC----eEEEEECCCCce--eeEEeCCCCCceEEEEeeCCCcc
Q 019349           81 NTTTGTALRELN---FLTSILAVRLNKKRLVIV--L-RE----KTYIYDANTLAI--LDTIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        81 d~~~~~~~~~~~---~~~~v~~i~~~~~~~~~~--~-d~----~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
                      +..+++.+....   +...|.+++|+++...++  + ++    .+++|++.....  ........+...+.+++++|++.
T Consensus       203 ~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~  282 (365)
T 4h5i_A          203 STVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGE  282 (365)
T ss_dssp             ETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSC
T ss_pred             EeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCC
Confidence            888888776543   234789999988754443  3 44    688899876543  22222223345688889999999


Q ss_pred             EEEEeCCCCccEEEEEEccCCceeEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349          149 FLAVPASTTKGSVLVYNVMELHSHCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~  212 (342)
                      +||+++  .|++|+|||+++++++.++ .+|..+|++|+|||||++|||||.|++ |||||+...
T Consensus       283 ~lasgs--~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~t-vrvw~ip~~  344 (365)
T 4h5i_A          283 LAVLAS--NDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANT-IHIIKLPLN  344 (365)
T ss_dssp             EEEEEE--TTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSE-EEEEECCTT
T ss_pred             ceEEEc--CCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCe-EEEEEcCCC
Confidence            999988  6899999999999999886 689999999999999999999999998 599999643

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.95  E-value=7.1e-28  Score=224.51  Aligned_cols=259  Identities=10%  Similarity=0.035  Sum_probs=181.5

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcE-EEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGF-KIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~-~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~   85 (342)
                      ...|.+++|+|||+++|+++.|+. +  |...++.+ ..|...+..+.+.+++              .++++.+|+.+..
T Consensus        15 ~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l-~gh~~~v~~V~FsPdg--------------~~~~~~~~~~~~~   77 (588)
T 2j04_A           15 EDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDI-NCNSKNLFHVKEFPLE--------------FENKLDFELAQQN   77 (588)
T ss_dssp             SSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCC-SSBGGGTEEEEEECCC--------------CCCTTTTSCCCSS
T ss_pred             hccEEEEEECCCCCEEEEEcCCceee--ccccccee-cCCCccEEEEEECCCC--------------CcceEEEEeCCCc
Confidence            467899999999999999999885 6  76555433 3444556666665544              1556666654322


Q ss_pred             cEEEEEecCCceEEEEEcCCeEEE--EE-CCeEEEEECCCCceeeEEeCCCC---CceEEEEeeCCCccEEEEeCCCCcc
Q 019349           86 TALRELNFLTSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPN---LKGLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        86 ~~~~~~~~~~~v~~i~~~~~~~~~--~~-d~~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      + +..+.+...|.+++|+|++..+  ++ |+.|++||...  ++..+. +..   ...+.+++++|++.+||+++  .||
T Consensus        78 ~-~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs--~DG  151 (588)
T 2j04_A           78 G-LLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGN--EDG  151 (588)
T ss_dssp             C-SSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEE--TTS
T ss_pred             e-EeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEc--CCC
Confidence            2 3333345689999999986544  34 89999999644  555544 332   23577999999999999998  699


Q ss_pred             EEEEEEccCCc-------eeEEE----ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee---EEEeccCcCce
Q 019349          160 SVLVYNVMELH-------SHCEI----DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK---SYSFRRGTYPS  225 (342)
Q Consensus       160 ~i~iwd~~~~~-------~~~~~----~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~---~~~~~~~~~~~  225 (342)
                      +|+|||+.+++       .+.++    .+|.+.|.+++|+|||  ||+++.|++ +|+||+.+++.   ..++..+ +..
T Consensus       152 tVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~t-VrlWd~~~~~~~~~~~tL~~~-h~~  227 (588)
T 2j04_A          152 ELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNS-VFSMTVSASSHQPVSRMIQNA-SRR  227 (588)
T ss_dssp             EEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCC-EEEECCCSSSSCCCEEEEECC-CSS
T ss_pred             EEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCe-EEEEECCCCccccceeeeccc-ccC
Confidence            99999998875       25676    5688899999999999  888899988 59999988773   2345333 345


Q ss_pred             eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCC--Ccccc
Q 019349          226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPA--GVKRA  303 (342)
Q Consensus       226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  303 (342)
                      .|.+++|+  ++   +||+++ +++|++||+........       .-++...    +          ..+++  .+++.
T Consensus       228 ~V~svaFs--g~---~LASa~-~~tIkLWd~~~~~~~~~-------~~gh~~~----V----------~~va~~~s~d~~  280 (588)
T 2j04_A          228 KITDLKIV--DY---KVVLTC-PGYVHKIDLKNYSISSL-------KTGSLEN----F----------HIIPLNHEKEST  280 (588)
T ss_dssp             CCCCEEEE--TT---EEEEEC-SSEEEEEETTTTEEEEE-------ECSCCSC----C----------CEEEETTCSSCE
T ss_pred             cEEEEEEE--CC---EEEEEe-CCeEEEEECCCCeEEEE-------EcCCCce----E----------EEEEeeeCCCCC
Confidence            69999999  46   899887 69999999886643110       0011111    1          11222  34446


Q ss_pred             EEEEEEeCCcEEEEEEe
Q 019349          304 SVSVITYNGYFVEYIFS  320 (342)
Q Consensus       304 ~l~~~~~dg~v~~~~~~  320 (342)
                      .|++++.||. ++|.++
T Consensus       281 ~La~a~edG~-klw~~d  296 (588)
T 2j04_A          281 ILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             EEEECSSCEE-EEEESS
T ss_pred             EEEEEcCCCC-EEEeec
Confidence            7888888999 888764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.7e-25  Score=208.13  Aligned_cols=256  Identities=11%  Similarity=0.060  Sum_probs=184.6

Q ss_pred             CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc---EEEEEecC-----------------------------
Q 019349           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT---ALRELNFL-----------------------------   94 (342)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~---~~~~~~~~-----------------------------   94 (342)
                      +++..+.+.+++++++...        ++.|++||+.+|+   .+..+..+                             
T Consensus         5 ~p~~~v~~s~dg~~l~~~~--------~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   76 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAII--------KNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKL   76 (450)
T ss_dssp             CCCCEEEECSSSSEEEEEE--------TTEEEEEEEETTTEEEEEEEEECCC----------------------------
T ss_pred             ccEEEEEecCCCCEEEEEe--------CCeEEEEECCCCCcceeeeecCCccccccccccccchhhcccccccccccccc
Confidence            4566677878887554443        5799999999998   55554421                             


Q ss_pred             --------------------------CceEEEEEcCCeEE--EEE--CCeEEEEECC--CCceeeEEeCCCCCceEEEEe
Q 019349           95 --------------------------TSILAVRLNKKRLV--IVL--REKTYIYDAN--TLAILDTIDTVPNLKGLCAFS  142 (342)
Q Consensus        95 --------------------------~~v~~i~~~~~~~~--~~~--d~~i~i~d~~--~~~~~~~~~~~~~~~~~~~~~  142 (342)
                                                ..|.+++|+++...  +++  |+.|++||+.  +++.+..+..+..+..+.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~  156 (450)
T 2vdu_B           77 KSNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAIS  156 (450)
T ss_dssp             -----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEE
T ss_pred             ccCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEE
Confidence                                      15899999987533  333  7899999999  888888876544556788899


Q ss_pred             eCCCccEEEEeCCCCccEEEEEEccCCceeE----EEecccCCeeEEEECCC---CCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349          143 PSLNACFLAVPASTTKGSVLVYNVMELHSHC----EIDAHQAPLAAIVLSSN---GMYIATASEQGTIIRVFLVSEATKS  215 (342)
Q Consensus       143 ~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~----~~~~h~~~v~~i~~s~d---g~~lat~s~dg~~irlwd~~~~~~~  215 (342)
                      ++|++.+|++++  .+|.|++|++.+++...    .+.+|..+|++++|+|+   +++|++|+.|++ |++||+.+++.+
T Consensus       157 ~sp~~~~l~~~~--~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~-i~vwd~~~~~~~  233 (450)
T 2vdu_B          157 IAEDDTTVIIAD--KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEH-IKISHYPQCFIV  233 (450)
T ss_dssp             ECTTSSEEEEEE--TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSC-EEEEEESCTTCE
T ss_pred             EcCCCCEEEEEe--CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCc-EEEEECCCCcee
Confidence            999999999887  58999999998876544    77899999999999999   999999999998 589999999888


Q ss_pred             EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccc-c-ccccccc---ccc
Q 019349          216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPES-V-NEVLDPA---DHH  290 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~---~~~  290 (342)
                      ..+..+ +...|.+++|+ +++   +|++++.|++|++||+++++.......... ...+.... . ...+...   ...
T Consensus       234 ~~~~~~-h~~~v~~~~~s-d~~---~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  307 (450)
T 2vdu_B          234 DKWLFG-HKHFVSSICCG-KDY---LLLSAGGDDKIFAWDWKTGKNLSTFDYNSL-IKPYLNDQHLAPPRFQNENNDIIE  307 (450)
T ss_dssp             EEECCC-CSSCEEEEEEC-STT---EEEEEESSSEEEEEETTTCCEEEEEECHHH-HGGGCCTTSBC----------CBC
T ss_pred             eeeecC-CCCceEEEEEC-CCC---EEEEEeCCCeEEEEECCCCcEeeeecchhh-hhhhhhhcccccccccccccccce
Confidence            775433 35679999999 998   999999999999999988764332110000 00000000 0 0000000   011


Q ss_pred             eeeeccCCCccccEEEEEE-eCCcEEEEEE
Q 019349          291 VLRNAFPAGVKRASVSVIT-YNGYFVEYIF  319 (342)
Q Consensus       291 ~~~~~~~~~~~~~~l~~~~-~dg~v~~~~~  319 (342)
                      ..+..+.+.++++.|++++ .||.|++|++
T Consensus       308 ~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~  337 (450)
T 2vdu_B          308 FAVSKIIKSKNLPFVAFFVEATKCIIILEM  337 (450)
T ss_dssp             CCEEEEEECSSSSEEEEEETTCSEEEEEEE
T ss_pred             EEEEEEEEeCCCCEEEEEECCCCeEEEEEe
Confidence            1223344456668899999 8999999999

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=1.7e-25  Score=201.95  Aligned_cols=234  Identities=12%  Similarity=0.076  Sum_probs=173.2

Q ss_pred             CeEEEEEcCCCCEEE-EEcCC-cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC-
Q 019349            9 PVFFVSFNQDNSGFA-LSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG-   85 (342)
Q Consensus         9 ~V~~l~fs~d~~~la-~g~~~-g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~-   85 (342)
                      .+..++|.++++.++ +|+.+ .+++||+.+++.+....... .+..+.++.+.++++.        +++|++||+.++ 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~--------~~~i~i~d~~~~~  130 (355)
T 3vu4_A           60 HLSKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA-PVKDLFLSREFIVVSY--------GDVISVFKFGNPW  130 (355)
T ss_dssp             CCCEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSS-CEEEEEECSSEEEEEE--------TTEEEEEESSTTC
T ss_pred             CeEEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCC-ceEEEEEcCCEEEEEE--------cCEEEEEECCCCc
Confidence            477888999888874 45555 57999999998776654322 3334445566666553        579999999988 


Q ss_pred             cEEEEEecCCceEEEEEcCCeEEEE-E--CCeEEEEECCCCc----------------eeeEEeCCCCCceEEEEeeCCC
Q 019349           86 TALRELNFLTSILAVRLNKKRLVIV-L--REKTYIYDANTLA----------------ILDTIDTVPNLKGLCAFSPSLN  146 (342)
Q Consensus        86 ~~~~~~~~~~~v~~i~~~~~~~~~~-~--d~~i~i~d~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~  146 (342)
                      +.+..+..  +...+++++..++++ +  ++.|++||+.+++                .+..+..|.  ..+.+++++|+
T Consensus       131 ~~~~~~~~--~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~--~~v~~~~~s~~  206 (355)
T 3vu4_A          131 KRITDDIR--FGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHT--NPIKMVRLNRK  206 (355)
T ss_dssp             CBSSCCEE--EEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCS--SCEEEEEECTT
T ss_pred             eeeEEecc--CCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccC--CceEEEEECCC
Confidence            66555444  334455666777776 2  7899999998765                145555443  46778888899


Q ss_pred             ccEEEEeCCCCccE-EEEEEccCCceeEEEe-c-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee--EEEecc-
Q 019349          147 ACFLAVPASTTKGS-VLVYNVMELHSHCEID-A-HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRR-  220 (342)
Q Consensus       147 ~~~l~~~~~~~~g~-i~iwd~~~~~~~~~~~-~-h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~--~~~~~~-  220 (342)
                      +.+||+++  .||+ |++||+++++++..+. + |..+|++++|+|||++|++++.|++ |++||++++..  ...+.. 
T Consensus       207 g~~l~s~s--~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~-v~iw~~~~~~~~~~~~~~~~  283 (355)
T 3vu4_A          207 SDMVATCS--QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWT-LHVFEIFNDQDNKRHALKGW  283 (355)
T ss_dssp             SSEEEEEE--TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCE-EEEEESSCCSCCCSEETTTT
T ss_pred             CCEEEEEe--CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCE-EEEEEccCCCCcccccccce
Confidence            99999998  6898 9999999999999998 5 9999999999999999999999997 58999976531  111100 


Q ss_pred             ------------------CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          221 ------------------GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       221 ------------------~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                                        .........++|++|++   +|++++.||.+++|++....+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~---~l~~~~~dg~~~~~~~~~~~~  339 (355)
T 3vu4_A          284 INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESS---LVVVWPHTRMIETFKVVFDDE  339 (355)
T ss_dssp             EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSE---EEEEETTTTEEEEEEEEEETT
T ss_pred             eeccccccccceeEEEeccCCCCCceEEEEeCCCC---EEEEEeCCCeEEEEEEEcCCC
Confidence                              00111236689999999   999999999999999876554

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.95  E-value=1.3e-25  Score=222.05  Aligned_cols=247  Identities=10%  Similarity=0.056  Sum_probs=180.1

Q ss_pred             EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC--CCcEEEEEe-cCCceEEEEEcCC----eEEEEE-CC
Q 019349           42 YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT--TGTALRELN-FLTSILAVRLNKK----RLVIVL-RE  113 (342)
Q Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~--~~~~~~~~~-~~~~v~~i~~~~~----~~~~~~-d~  113 (342)
                      +..|.+.+..+.+.++++.+++++.       |++|++||+.  +++.+..+. +...|.+++|+++    .++.++ |+
T Consensus         5 l~gH~~~V~~l~~s~dg~~latg~~-------dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg   77 (753)
T 3jro_A            5 ANAHNELIHDAVLDYYGKRLATCSS-------DKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDG   77 (753)
T ss_dssp             ---CCCCEEEECCCSSSCCEEEEET-------TTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTS
T ss_pred             cccCcceeEEEEECCCCCeEEEEEC-------CCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCC
Confidence            3456677887888777887777664       8999999997  445555554 4568999999754    445555 89


Q ss_pred             eEEEEECCCCc--eeeEEeCCCCCceEEEEeeCCC--ccEEEEeCCCCccEEEEEEccCCc--eeEEEecccCCeeEEEE
Q 019349          114 KTYIYDANTLA--ILDTIDTVPNLKGLCAFSPSLN--ACFLAVPASTTKGSVLVYNVMELH--SHCEIDAHQAPLAAIVL  187 (342)
Q Consensus       114 ~i~i~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~  187 (342)
                      .|++||+.+++  .+..+..  +...+.+++++|+  +..+++++  .||.|++||+.++.  ....+.+|..+|.+++|
T Consensus        78 ~I~vwd~~~~~~~~~~~~~~--h~~~V~~v~~sp~~~~~~l~sgs--~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~  153 (753)
T 3jro_A           78 KVLIWKEENGRWSQIAVHAV--HSASVNSVQWAPHEYGPLLLVAS--SDGKVSVVEFKENGTTSPIIIDAHAIGVNSASW  153 (753)
T ss_dssp             CEEEEEEETTEEEEEEEECC--CSSCEEEEEECCGGGCSEEEEEE--TTSEEEEEECCSSSCCCCEEEECCSSCEEEEEE
T ss_pred             eEEEEECCCCcccccccccC--CCCCeEEEEECCCCCCCEEEEEe--CCCcEEEEEeecCCCcceeEeecCCCceEEEEe
Confidence            99999999886  4444443  3446777777777  78898888  68999999998773  44567789999999999


Q ss_pred             CC-------------CCCEEEEEeCCCcEEEEEEcCCC----eeEEEeccCcCceeEEEEEEecC---CCcccEEEEEeC
Q 019349          188 SS-------------NGMYIATASEQGTIIRVFLVSEA----TKSYSFRRGTYPSTIFSLSFGQS---MQFQDILVATSS  247 (342)
Q Consensus       188 s~-------------dg~~lat~s~dg~~irlwd~~~~----~~~~~~~~~~~~~~v~~l~fs~d---~~~~~~l~~~s~  247 (342)
                      +|             ++.+|++|+.||+ |++||++++    ..+..+..  +...|.+++|+|+   +.   +|++++.
T Consensus       154 ~p~~~~~~~~~~~~~d~~~l~sgs~dg~-I~iwd~~~~~~~~~~~~~~~~--h~~~V~~l~~sp~~~~~~---~l~s~s~  227 (753)
T 3jro_A          154 APATIEEDGEHNGTKESRKFVTGGADNL-VKIWKYNSDAQTYVLESTLEG--HSDWVRDVAWSPTVLLRS---YLASVSQ  227 (753)
T ss_dssp             CCCC---------CGGGCCEEEEETTSC-EEEEEEETTTTEEEEEEEECC--CSSCEEEEEECCCCSSSE---EEEEEES
T ss_pred             cCcccccccccccCCCCCEEEEEECCCe-EEEEeccCCcccceeeeeecC--CCCcEEEEEeccCCCCCC---EEEEEec
Confidence            99             5999999999998 589999887    34444432  3567999999999   77   9999999


Q ss_pred             CCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          248 SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       248 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      ||+|++||++..........  .....+...              +..+.+.+++..|++++.||.|++|+++.
T Consensus       228 Dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~--------------v~~l~~spdg~~l~s~s~Dg~I~vwd~~~  285 (753)
T 3jro_A          228 DRTCIIWTQDNEQGPWKKTL--LKEEKFPDV--------------LWRASWSLSGNVLALSGGDNKVTLWKENL  285 (753)
T ss_dssp             SSCEEEEEESSSSSCCBCCB--SSSSCCSSC--------------CCCEEECTTTCCEEEECSSSCEECCBCCS
T ss_pred             CCEEEEecCCCCCCcceeEE--eccCCCCCc--------------eEEEEEcCCCCEEEEEcCCCEEEEEecCC
Confidence            99999999987643211000  000001111              11223344457899999999999999874

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.94  E-value=3.5e-24  Score=197.71  Aligned_cols=236  Identities=15%  Similarity=0.096  Sum_probs=188.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .+...|.+++|+|++.++++++.++ +++||+.+++.+....  ...+..+.+.++.+.+++++.      .++.|++||
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------~~~~i~~~d  240 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNW------ISEDISVID  240 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEET------TTTEEEEEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEec------CCCcEEEEE
Confidence            4567899999999999999998766 6999999987765543  356777788888887766664      488999999


Q ss_pred             CCCCcEEEEEecCCceEEEEEcCCe--EEEEE---------CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349           82 TTTGTALRELNFLTSILAVRLNKKR--LVIVL---------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                      +++++.+..+.....+.+++++++.  ++++.         |+.|++||+.+++.+..+...   .....++++|++..+
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l  317 (433)
T 3bws_A          241 RKTKLEIRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPP---GNKRHIVSGNTENKI  317 (433)
T ss_dssp             TTTTEEEEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEE---ECEEEEEECSSTTEE
T ss_pred             CCCCcEEEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCC---CCcceEEECCCCCEE
Confidence            9999998888877789999998874  44444         459999999998877666322   235566777888666


Q ss_pred             EEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC---------------CCcEEEEEEcCCCeeE
Q 019349          151 AVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE---------------QGTIIRVFLVSEATKS  215 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~---------------dg~~irlwd~~~~~~~  215 (342)
                      ++++. .++.|++||+.+++.+..+. |...+.+++|+|+|++|++++.               ||. |++||+.+++.+
T Consensus       318 ~~~~~-~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~-v~~~d~~~~~~~  394 (433)
T 3bws_A          318 YVSDM-CCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGK-VYVIDTTTDTVK  394 (433)
T ss_dssp             EEEET-TTTEEEEEETTTTEEEEEEE-CSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCE-EEEEETTTTEEE
T ss_pred             EEEec-CCCEEEEEECCCCcEEEEec-CCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceE-EEEEECCCCcEE
Confidence            55543 68999999999998887776 6778999999999999999887               456 589999999988


Q ss_pred             EEeccCcCceeEEEEEEecCCCcccEEEEEeC-CCcEEEEecCC
Q 019349          216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGSLHVFSPGF  258 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~-dg~i~vwd~~~  258 (342)
                      ..+..   ...+.+++|+||++   +|++++. |++|++|+++.
T Consensus       395 ~~~~~---~~~~~~~~~s~dg~---~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          395 EFWEA---GNQPTGLDVSPDNR---YLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             EEEEC---SSSEEEEEECTTSC---EEEEEETTTTEEEEEEETT
T ss_pred             EEecC---CCCCceEEEcCCCC---EEEEEECCCCeEEEEEecC
Confidence            88754   23589999999998   8887765 99999999863

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=2.3e-24  Score=197.21  Aligned_cols=215  Identities=11%  Similarity=-0.009  Sum_probs=136.3

Q ss_pred             CCCeEEEEECCCCcEEEEEe------cCCceEEEEEcC--------CeEEE--EE-CCeEEEEECCCCceeeEEeCCCCC
Q 019349           73 SPRRLCLFNTTTGTALRELN------FLTSILAVRLNK--------KRLVI--VL-REKTYIYDANTLAILDTIDTVPNL  135 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~------~~~~v~~i~~~~--------~~~~~--~~-d~~i~i~d~~~~~~~~~~~~~~~~  135 (342)
                      .|++|+|||..+++......      |...|.+++|+|        +..++  ++ |++|+|||+.++..+..+..+.. 
T Consensus       109 ~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~-  187 (393)
T 4gq1_A          109 QDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSS-  187 (393)
T ss_dssp             TTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSS-
T ss_pred             CCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCC-
Confidence            59999999999887654321      356899999976        33333  33 88999999988877666655544 


Q ss_pred             ceEEEEeeCCCcc-EEEEeCCCCccEEEEEEccCCceeEE-------------------------EecccCCeeEEEEC-
Q 019349          136 KGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSHCE-------------------------IDAHQAPLAAIVLS-  188 (342)
Q Consensus       136 ~~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~~~~~-------------------------~~~h~~~v~~i~~s-  188 (342)
                       .+.+++++|++. +|++++  .||+|++||+++++....                         ..+|...|.++.|+ 
T Consensus       188 -~v~~v~~~p~~~~~l~~~~--~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~  264 (393)
T 4gq1_A          188 -PGISVQFRPSNPNQLIVGE--RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG  264 (393)
T ss_dssp             -CEEEEEEETTEEEEEEEEE--TTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEET
T ss_pred             -CcEEEEECCCCCceEEecC--CCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeec
Confidence             456777777764 677766  689999999987754321                         23678889999987 


Q ss_pred             CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE------------------EEEec--CCCcccEEEEEeCC
Q 019349          189 SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS------------------LSFGQ--SMQFQDILVATSSS  248 (342)
Q Consensus       189 ~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~------------------l~fs~--d~~~~~~l~~~s~d  248 (342)
                      |||+.|++++.|++ +++||+.+++....+..+  ...+..                  ..|+|  ++.   ++++|+.|
T Consensus       265 ~dg~~l~s~s~d~~-i~vwd~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~sgs~D  338 (393)
T 4gq1_A          265 SDGSGILAMCKSGA-WLRWNLFANNDYNEISDS--TMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDY---FATAHSQH  338 (393)
T ss_dssp             TTTCEEEEECTTSE-EEEEEC---------------------CCSCSEEEECSSCCSSCCEECSSCTTE---EEEEETTT
T ss_pred             CCCCEEEEEeCCCC-EEEEECccCCCCceEeee--cCccccEEEccccccccccCcceeEEEccCCCCE---EEEEECCC
Confidence            79999999999998 589999888765554322  111222                  23333  334   67788899


Q ss_pred             CcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEE
Q 019349          249 GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       249 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~  319 (342)
                      |+|+|||+..+.....       ...+........|+|+              +++|++++.|| +.+|.+
T Consensus       339 g~V~lwd~~~~~~~~~-------~~~~~~~V~svafspd--------------G~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          339 GLIQLINTYEKDSNSI-------PIQLGMPIVDFCWHQD--------------GSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             TEEEEEETTCTTCCEE-------EEECSSCEEEEEECTT--------------SSEEEEEESSE-EEEEEE
T ss_pred             CEEEEEECCCCcEEEE-------ecCCCCcEEEEEEcCC--------------CCEEEEEeCCC-eEEEEE
Confidence            9999999987654321       0111111122345554              47888887665 555655

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=5.5e-25  Score=201.35  Aligned_cols=233  Identities=12%  Similarity=0.061  Sum_probs=145.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE-------EeeCCEEEEEEcC--------CCCeEEEEcCCCCCCC
Q 019349            9 PVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE-------RAVGAFSIVEMLY--------SSSLLAIVGAGEQPSL   72 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~-------~~~~~~~~~~~~~--------~~~~~~~~~~g~~~~~   72 (342)
                      .+....+++++.+||+|+.|+ +++||+.+++....       .|.+.+..+++.+        +++.++.++       
T Consensus        91 ~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s-------  163 (393)
T 4gq1_A           91 DGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVG-------  163 (393)
T ss_dssp             ------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEE-------
T ss_pred             CcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEE-------
Confidence            334445556777899998776 79999988865432       2445677777754        334555555       


Q ss_pred             CCCeEEEEECCCCcEEE-EEecCCceEEEEEcCCe--EEE-EE-CCeEEEEECCCCceeeEEeCCC--------------
Q 019349           73 SPRRLCLFNTTTGTALR-ELNFLTSILAVRLNKKR--LVI-VL-REKTYIYDANTLAILDTIDTVP--------------  133 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~-~~~~~~~v~~i~~~~~~--~~~-~~-d~~i~i~d~~~~~~~~~~~~~~--------------  133 (342)
                      .|++|+|||+.++.++. ...+...|.+++|+|+.  +++ ++ |++|++||+.+++.........              
T Consensus       164 ~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~  243 (393)
T 4gq1_A          164 DDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLP  243 (393)
T ss_dssp             TTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGG
T ss_pred             CCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEeccccc
Confidence            49999999998776654 45677899999999864  233 33 8899999998876543332110              


Q ss_pred             ---------CCceEEEEee-CCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECC--------------
Q 019349          134 ---------NLKGLCAFSP-SLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS--------------  189 (342)
Q Consensus       134 ---------~~~~~~~~~~-~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~--------------  189 (342)
                               +...+.++.+ .+++..+++++  .|+++++||+..++....+..|...+..+.+.|              
T Consensus       244 ~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s--~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (393)
T 4gq1_A          244 LVNTCHSSGIASSLANVRWIGSDGSGILAMC--KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGA  321 (393)
T ss_dssp             GC------CCSSSCSEEEEETTTTCEEEEEC--TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCC
T ss_pred             ceeeeecccccccceeeeeecCCCCEEEEEe--CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeE
Confidence                     1112223333 36788888887  689999999988876666666665555544433              


Q ss_pred             ------CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          190 ------NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       190 ------dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                            ++.++++|+.||+ |++||+.+++.+..+..+  ...|.+|+|||||+   +||+++++| +.+|.+.
T Consensus       322 ~~~~~~~~~~~~sgs~Dg~-V~lwd~~~~~~~~~~~~~--~~~V~svafspdG~---~LA~as~~G-v~lvrL~  388 (393)
T 4gq1_A          322 CPHPRYMDYFATAHSQHGL-IQLINTYEKDSNSIPIQL--GMPIVDFCWHQDGS---HLAIATEGS-VLLTRLM  388 (393)
T ss_dssp             EECSSCTTEEEEEETTTTE-EEEEETTCTTCCEEEEEC--SSCEEEEEECTTSS---EEEEEESSE-EEEEEEG
T ss_pred             EEccCCCCEEEEEECCCCE-EEEEECCCCcEEEEecCC--CCcEEEEEEcCCCC---EEEEEeCCC-eEEEEEe
Confidence                  3446788889997 589999999887766543  45699999999999   999998765 6666653

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.93  E-value=2.9e-24  Score=192.97  Aligned_cols=242  Identities=7%  Similarity=0.075  Sum_probs=169.4

Q ss_pred             EeeCCEEEEEEcCCC---CeEEEEcCCCCCCCCCCeEEEEECCC-CcEE-EEEe-cCCceEEEEEcCCe--EEEEE-CCe
Q 019349           44 RAVGAFSIVEMLYSS---SLLAIVGAGEQPSLSPRRLCLFNTTT-GTAL-RELN-FLTSILAVRLNKKR--LVIVL-REK  114 (342)
Q Consensus        44 ~~~~~~~~~~~~~~~---~~~~~~~~g~~~~~~d~~i~iwd~~~-~~~~-~~~~-~~~~v~~i~~~~~~--~~~~~-d~~  114 (342)
                      .|.+.+..+.+.++.   +.++..+       .|+.|++||+.+ ++.+ ..+. +...|.+++|+++.  ++.++ |+.
T Consensus        37 ~h~~~v~~~~~~~~~~~g~~l~~~~-------~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           37 SPDDSIGCLSFSPPTLPGNFLIAGS-------WANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             CCSSCEEEEEECCTTSSSEEEEEEE-------TTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             CCCCceEEEEEcCCCCCceEEEEEC-------CCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            345678888887774   5555554       389999999987 5554 4443 56699999998874  44444 889


Q ss_pred             EEEEECCCCceeeEEeCCCCCceEEEEee--CCCccEEEEeCCCCccEEEEEEccCCceeEEEeccc-------------
Q 019349          115 TYIYDANTLAILDTIDTVPNLKGLCAFSP--SLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ-------------  179 (342)
Q Consensus       115 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~-------------  179 (342)
                      |++||+.+++.+.... +..  .+.++++  ++++.++++++  .||.|++||+++++++..+..|.             
T Consensus       110 v~iwd~~~~~~~~~~~-~~~--~v~~~~~~~~~~~~~l~~~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (368)
T 3mmy_A          110 AKMWDLSSNQAIQIAQ-HDA--PVKTIHWIKAPNYSCVMTGS--WDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV  184 (368)
T ss_dssp             EEEEETTTTEEEEEEE-CSS--CEEEEEEEECSSCEEEEEEE--TTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred             EEEEEcCCCCceeecc-ccC--ceEEEEEEeCCCCCEEEEcc--CCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence            9999999988776443 333  3555555  88888899888  68999999999888776665443             


Q ss_pred             ----------------------------CCeeEEEECCCCCE----EEEEeCCCcEEEEEEcCCC---eeEEEeccCcCc
Q 019349          180 ----------------------------APLAAIVLSSNGMY----IATASEQGTIIRVFLVSEA---TKSYSFRRGTYP  224 (342)
Q Consensus       180 ----------------------------~~v~~i~~s~dg~~----lat~s~dg~~irlwd~~~~---~~~~~~~~~~~~  224 (342)
                                                  ..+.++++.+++..    +++++.||. |++||+...   +.+..+..+...
T Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~-i~i~~~~~~~~~~~~~~~~~~~~~  263 (368)
T 3mmy_A          185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGR-VAIHYINPPNPAKDNFTFKCHRSN  263 (368)
T ss_dssp             EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSE-EEEEESSCSCHHHHSEEEECSEEC
T ss_pred             EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCc-EEEEecCCCCccccceeeeeeecc
Confidence                                        33445555554443    999999997 589999887   445555432110


Q ss_pred             ----------eeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeee
Q 019349          225 ----------STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRN  294 (342)
Q Consensus       225 ----------~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (342)
                                ..|.+++|+|+++   +|++++.||.|++||+++.+......       .+..              .+.
T Consensus       264 ~~~~~~~~~~~~v~~~~~sp~~~---~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~--------------~v~  319 (368)
T 3mmy_A          264 GTNTSAPQDIYAVNGIAFHPVHG---TLATVGSDGRFSFWDKDARTKLKTSE-------QLDQ--------------PIS  319 (368)
T ss_dssp             ----CCCEEECCEEEEEECTTTC---CEEEEETTSCEEEEETTTTEEEEECC-------CCSS--------------CEE
T ss_pred             cccccccccccceEEEEEecCCC---EEEEEccCCeEEEEECCCCcEEEEec-------CCCC--------------Cce
Confidence                      1599999999999   99999999999999998765432111       1111              112


Q ss_pred             ccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          295 AFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       295 ~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      .+.+.+++.+|++++.||..+.|.+...
T Consensus       320 ~~~~s~~g~~l~~~s~d~~~~~~~~~~~  347 (368)
T 3mmy_A          320 ACCFNHNGNIFAYASSYDWSKGHEFYNP  347 (368)
T ss_dssp             EEEECTTSSCEEEEECCCSTTCGGGCCT
T ss_pred             EEEECCCCCeEEEEecccccccccccCC
Confidence            2333444589999999998777765433

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.3e-25  Score=205.25  Aligned_cols=225  Identities=11%  Similarity=0.065  Sum_probs=169.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      ..|+..|++++|+|+|      ..+.+.+|+.+..+..-..+...+..+.+.+++..++.++.       |++|++||.+
T Consensus        49 ~gh~~~v~~V~FsPdg------~~~~~~~~~~~~~~~~~~~~~~~V~~vawSPdG~~LAs~s~-------dg~V~iwd~~  115 (588)
T 2j04_A           49 NCNSKNLFHVKEFPLE------FENKLDFELAQQNGLLNSQPVCYPRVCKPSPIDDWMAVLSN-------NGNVSVFKDN  115 (588)
T ss_dssp             SSBGGGTEEEEEECCC------CCCTTTTSCCCSSCSSTTSCSCCEEEEEECSSSSCEEEEET-------TSCEEEEETT
T ss_pred             cCCCccEEEEEECCCC------CcceEEEEeCCCceEeecCCCCcEEEEEECCCCCEEEEEeC-------CCcEEEEeCC
Confidence            3577889999999999      33334666644322221123467888999999999998875       8999999954


Q ss_pred             CCcEEEEEecCC-----ceEEEEEcCCeEEE--EE-CCeEEEEECCCCce-------eeEEeCC--CCCceEEEEeeCCC
Q 019349           84 TGTALRELNFLT-----SILAVRLNKKRLVI--VL-REKTYIYDANTLAI-------LDTIDTV--PNLKGLCAFSPSLN  146 (342)
Q Consensus        84 ~~~~~~~~~~~~-----~v~~i~~~~~~~~~--~~-d~~i~i~d~~~~~~-------~~~~~~~--~~~~~~~~~~~~~~  146 (342)
                      +  ++..+.+..     .+.+++|+|++..+  ++ |++|+|||+.+++.       +.++..+  .+...+.+++++|+
T Consensus       116 ~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPd  193 (588)
T 2j04_A          116 K--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYED  193 (588)
T ss_dssp             E--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETT
T ss_pred             c--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCC
Confidence            4  555555222     49999999986444  44 88999999998753       5666422  23456888888899


Q ss_pred             ccEEEEeCCCCccEEEEEEccCCce---eEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc
Q 019349          147 ACFLAVPASTTKGSVLVYNVMELHS---HCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT  222 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~~~---~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~  222 (342)
                      +  +++++  .|++|++||+..++.   ..++ .+|...|.+++|+  |+.||+++ +++ |++||+.+++..... .+ 
T Consensus       194 g--Laass--~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~t-IkLWd~~~~~~~~~~-~g-  263 (588)
T 2j04_A          194 V--LVAAL--SNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGY-VHKIDLKNYSISSLK-TG-  263 (588)
T ss_dssp             E--EEEEE--TTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSE-EEEEETTTTEEEEEE-CS-
T ss_pred             c--EEEEe--CCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCe-EEEEECCCCeEEEEE-cC-
Confidence            8  55565  489999999988773   3567 4888999999999  68999998 576 689999988763322 23 


Q ss_pred             CceeEEEEEE--ecCCCcccEEEEEeCCCcEEEEecC
Q 019349          223 YPSTIFSLSF--GQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       223 ~~~~v~~l~f--s~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +.+.+.+++|  +||+.   .|+++++||+ ++|..+
T Consensus       264 h~~~V~~va~~~s~d~~---~La~a~edG~-klw~~d  296 (588)
T 2j04_A          264 SLENFHIIPLNHEKEST---ILLMSNKTSY-KVLLED  296 (588)
T ss_dssp             CCSCCCEEEETTCSSCE---EEEECSSCEE-EEEESS
T ss_pred             CCceEEEEEeeeCCCCC---EEEEEcCCCC-EEEeec
Confidence            4667999999  99999   9999999999 999986

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.91  E-value=1.7e-21  Score=185.32  Aligned_cols=282  Identities=12%  Similarity=0.081  Sum_probs=195.9

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEeC--CCCcEEEEEeeC-CEEEEEEcC----CCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            9 PVFFVSFNQDNSGFALSTKDG-FKIFDS--STGRLCYERAVG-AFSIVEMLY----SSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g-~~v~d~--~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      .+.+++|+|||++|++++.++ +++||+  .+++.+.....+ ....+.+.+    +++.+++.+.      .+++|.+|
T Consensus       180 ~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~~va~sp~~~~dg~~l~v~~~------~~~~v~v~  253 (543)
T 1nir_A          180 AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY------WPPQFAIM  253 (543)
T ss_dssp             TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE------ESSEEEEE
T ss_pred             ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcceEEeCCCcCCCCCEEEEEEc------cCCeEEEE
Confidence            388999999999998887665 799999  788776655433 344566776    7777776653      47899999


Q ss_pred             ECCCCcEEEEEecC-----------C-ceEEEEEcCC--eEEEEE--CCeEEEEECCCCceee--EEeCCCCCceEEEEe
Q 019349           81 NTTTGTALRELNFL-----------T-SILAVRLNKK--RLVIVL--REKTYIYDANTLAILD--TIDTVPNLKGLCAFS  142 (342)
Q Consensus        81 d~~~~~~~~~~~~~-----------~-~v~~i~~~~~--~~~~~~--d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~  142 (342)
                      |..+++++..+...           . .+.++.++++  .+++..  +++|.+||+.+.+.+.  .+....   ....+.
T Consensus       254 D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~---~~~~~~  330 (543)
T 1nir_A          254 DGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAP---FLHDGG  330 (543)
T ss_dssp             ETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCS---SCCCEE
T ss_pred             eccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCc---CccCce
Confidence            99999999887642           2 6788999874  344444  7899999998876544  444322   233456


Q ss_pred             eCCCccEEEEeCCCCccEEEEEEccCCceeEEEec----ccCCeeEEEECCC-CCEEEEEe-CCCcEEEEEEcCC-----
Q 019349          143 PSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA----HQAPLAAIVLSSN-GMYIATAS-EQGTIIRVFLVSE-----  211 (342)
Q Consensus       143 ~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~----h~~~v~~i~~s~d-g~~lat~s-~dg~~irlwd~~~-----  211 (342)
                      ++|++.++++++. .+++|.+||+.+++.+..+..    |......+ ++|+ |..++|++ .|++ |++||+.+     
T Consensus       331 ~spdg~~l~va~~-~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~-V~v~d~~~~~~~~  407 (543)
T 1nir_A          331 WDSSHRYFMTAAN-NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGS-ISLIGTDPKNHPQ  407 (543)
T ss_dssp             ECTTSCEEEEEEG-GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSE-EEEEECCTTTCTT
T ss_pred             ECCCCCEEEEEec-CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCce-EEEEEeCCCCCch
Confidence            7788887766554 578999999999999888874    55433333 5677 67777776 5676 68999998     


Q ss_pred             --CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe-------CCCcEEEEecCCCCCCCCCCCccccccccccccccc
Q 019349          212 --ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-------SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNE  282 (342)
Q Consensus       212 --~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (342)
                        ++.+.++..+  ...+..++||||++   +|++++       .+++|.|||+++.+....          .++-  . 
T Consensus       408 ~~~~~v~~l~~~--g~~~~~v~~~pdg~---~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~----------~~~v--~-  469 (543)
T 1nir_A          408 YAWKKVAELQGQ--GGGSLFIKTHPKSS---HLYVDTTFNPDARISQSVAVFDLKNLDAKYQ----------VLPI--A-  469 (543)
T ss_dssp             TBTSEEEEEECS--CSCCCCEECCTTCC---EEEECCTTCSSHHHHTCEEEEETTCTTSCCE----------EECH--H-
T ss_pred             hcCeEEEEEEcC--CCCceEEEcCCCCC---cEEEecCCCCCcccCceEEEEECCCCCCCeE----------Eeec--h-
Confidence              7888888643  23467799999999   899887       277999999998764311          1100  0 


Q ss_pred             ccc-ccccceeeeccCCCccccEEEEEEe-----CCcEEEEEEe
Q 019349          283 VLD-PADHHVLRNAFPAGVKRASVSVITY-----NGYFVEYIFS  320 (342)
Q Consensus       283 ~~~-~~~~~~~~~~~~~~~~~~~l~~~~~-----dg~v~~~~~~  320 (342)
                      -|. ...+......+.|.++++.|++...     |+.|.+|+..
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~  513 (543)
T 1nir_A          470 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDK  513 (543)
T ss_dssp             HHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETT
T ss_pred             hhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECC
Confidence            000 0011112234455777788887643     7999998543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.90  E-value=3.5e-21  Score=183.08  Aligned_cols=282  Identities=15%  Similarity=0.088  Sum_probs=196.2

Q ss_pred             EEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC--CCCcEEE
Q 019349           14 SFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT--TTGTALR   89 (342)
Q Consensus        14 ~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~--~~~~~~~   89 (342)
                      +|+|++..+++++.++ +.+||..+++++.... ...+..+.+.++++++++++.       +++|.+||+  .+++.+.
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~~v~~spdg~~l~v~~~-------d~~V~v~D~~~~t~~~~~  216 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR-------DARIDMIDLWAKEPTKVA  216 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEEEEEECTTSCEEEEEET-------TSEEEEEETTSSSCEEEE
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccceEEECCCCCEEEEECC-------CCeEEEEECcCCCCcEEE
Confidence            4899998888887766 7999999998876655 334556778888888887775       699999999  8999999


Q ss_pred             EEecCCceEEEEEcC----Ce--EEEEE--CCeEEEEECCCCceeeEEeCCCC--------C-ceEEEEeeCCCccEEEE
Q 019349           90 ELNFLTSILAVRLNK----KR--LVIVL--REKTYIYDANTLAILDTIDTVPN--------L-KGLCAFSPSLNACFLAV  152 (342)
Q Consensus        90 ~~~~~~~v~~i~~~~----~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~--------~-~~~~~~~~~~~~~~l~~  152 (342)
                      ++.....+..+++++    +.  ++++.  +++|.+||..++++++.+.....        + ..+.++..++++..+++
T Consensus       217 ~i~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~v  296 (543)
T 1nir_A          217 EIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIV  296 (543)
T ss_dssp             EEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEE
T ss_pred             EEecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEE
Confidence            988777899999998    53  44544  78999999999999988875321        1 13556666666555555


Q ss_pred             eCCCCccEEEEEEccCCceeE--EEecccCCeeEEEECCCCCEEEEEeC-CCcEEEEEEcCCCeeEEEeccCcCce--eE
Q 019349          153 PASTTKGSVLVYNVMELHSHC--EIDAHQAPLAAIVLSSNGMYIATASE-QGTIIRVFLVSEATKSYSFRRGTYPS--TI  227 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~~~~--~~~~h~~~v~~i~~s~dg~~lat~s~-dg~~irlwd~~~~~~~~~~~~~~~~~--~v  227 (342)
                      +.. .+|.|.+||..+.+.+.  .+. +...+..++|+|||++|++++. +++ |++||+.+++++..+..+..+.  ..
T Consensus       297 s~~-~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~-v~v~D~~tg~l~~~i~~g~~ph~g~g  373 (543)
T 1nir_A          297 NVK-ETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNK-VAVIDSKDRRLSALVDVGKTPHPGRG  373 (543)
T ss_dssp             EET-TTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTE-EEEEETTTTEEEEEEECSSSBCCTTC
T ss_pred             EEC-CCCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCe-EEEEECCCCeEEEeeccCCCCCCCCC
Confidence            544 68999999998876543  443 5677889999999998776654 666 6899999999988876432221  22


Q ss_pred             EEEEEecC-CCcccEEEEEe-CCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEE
Q 019349          228 FSLSFGQS-MQFQDILVATS-SSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASV  305 (342)
Q Consensus       228 ~~l~fs~d-~~~~~~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  305 (342)
                      ..+ ++|+ +.   ++++++ .|++|.|||+++...+.   .....+..+.        .+.   .....+.+.|++++|
T Consensus       374 ~~~-~~p~~g~---~~~s~~~~d~~V~v~d~~~~~~~~---~~~~~v~~l~--------~~g---~~~~~v~~~pdg~~l  435 (543)
T 1nir_A          374 ANF-VHPKYGP---VWSTSHLGDGSISLIGTDPKNHPQ---YAWKKVAELQ--------GQG---GGSLFIKTHPKSSHL  435 (543)
T ss_dssp             EEE-EETTTEE---EEEEEBSSSSEEEEEECCTTTCTT---TBTSEEEEEE--------CSC---SCCCCEECCTTCCEE
T ss_pred             ccc-CCCCCcc---EEEeccCCCceEEEEEeCCCCCch---hcCeEEEEEE--------cCC---CCceEEEcCCCCCcE
Confidence            222 4787 44   667665 68999999998732211   0011111110        000   001233455666788


Q ss_pred             EEEE-------eCCcEEEEEEecCC
Q 019349          306 SVIT-------YNGYFVEYIFSINN  323 (342)
Q Consensus       306 ~~~~-------~dg~v~~~~~~~~~  323 (342)
                      ++.+       .+++|.+|+++..+
T Consensus       436 ~v~~~~~~~~~~~~~v~v~d~~~~~  460 (543)
T 1nir_A          436 YVDTTFNPDARISQSVAVFDLKNLD  460 (543)
T ss_dssp             EECCTTCSSHHHHTCEEEEETTCTT
T ss_pred             EEecCCCCCcccCceEEEEECCCCC
Confidence            8877       37789999876544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.90  E-value=3.2e-20  Score=166.06  Aligned_cols=237  Identities=9%  Similarity=0.036  Sum_probs=178.5

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC--------cEEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            8 YPVFFVSFNQDNSGFALSTKD--------GFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~--------g~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      ..+..++|+|++++|++++.+        .+.+||..+++.+..... .....+.+.++++.+++...      .++.|.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~------~~~~v~  114 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNT------VNSAVT  114 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEET------TTTEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEec------CCCEEE
Confidence            467899999999998877632        479999999987655443 23344567777777766665      378999


Q ss_pred             EEECCCCcEEEEEecCC----------ceEEEEEcCC--eEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEee
Q 019349           79 LFNTTTGTALRELNFLT----------SILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSP  143 (342)
Q Consensus        79 iwd~~~~~~~~~~~~~~----------~v~~i~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~  143 (342)
                      +||..+++.+..+....          .+.++.++++  .++++.   ++.|++||..+++.+..+......  ...+++
T Consensus       115 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~  192 (353)
T 3vgz_A          115 AIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKM--STGLAL  192 (353)
T ss_dssp             EEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTT--CCCCEE
T ss_pred             EEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCc--cceEEE
Confidence            99999999988887643          2688899876  355555   568999999999888887632221  233455


Q ss_pred             CCCccEEEEeCCCCccEEEEEEccCCceeEEEec----ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349          144 SLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA----HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       144 ~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~----h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~  219 (342)
                      +|++..++++.  .++.|.+||+.+++.+..+..    +...+..++|+|+|++|+.++.++..|.+||+.+++.+..+.
T Consensus       193 s~dg~~l~~~~--~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~  270 (353)
T 3vgz_A          193 DSEGKRLYTTN--ADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVA  270 (353)
T ss_dssp             ETTTTEEEEEC--TTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEE
T ss_pred             CCCCCEEEEEc--CCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEE
Confidence            67777888777  479999999999988877764    556688999999999888877663346899999999888775


Q ss_pred             cCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCCCCC
Q 019349          220 RGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAIN  261 (342)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~~  261 (342)
                      .+.    ...++|+||++   +|++++ .+++|.+||+++.+.
T Consensus       271 ~~~----~~~~~~s~dg~---~l~v~~~~~~~v~~~d~~~~~~  306 (353)
T 3vgz_A          271 APE----SLAVLFNPARN---EAYVTHRQAGKVSVIDAKSYKV  306 (353)
T ss_dssp             CSS----CCCEEEETTTT---EEEEEETTTTEEEEEETTTTEE
T ss_pred             cCC----CceEEECCCCC---EEEEEECCCCeEEEEECCCCeE
Confidence            432    24689999998   666555 689999999876653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.90  E-value=1.2e-21  Score=180.57  Aligned_cols=278  Identities=13%  Similarity=0.037  Sum_probs=182.1

Q ss_pred             CCeEEEEEcCCCC-EEEEEc----CCc-----EEEEeC--CCCcEEEE--E--eeCCEEEEEEcC--------------C
Q 019349            8 YPVFFVSFNQDNS-GFALST----KDG-----FKIFDS--STGRLCYE--R--AVGAFSIVEMLY--------------S   57 (342)
Q Consensus         8 ~~V~~l~fs~d~~-~la~g~----~~g-----~~v~d~--~~~~~~~~--~--~~~~~~~~~~~~--------------~   57 (342)
                      ..+...+|++.|. ++++|+    .+|     +++||+  .+++.+..  .  +...+..+....              .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            4788889999886 455765    344     699999  88876633  2  111111111111              1


Q ss_pred             CCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE-C---CeEEEEECCCCceeeEEeC
Q 019349           58 SSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-R---EKTYIYDANTLAILDTIDT  131 (342)
Q Consensus        58 ~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~-d---~~i~i~d~~~~~~~~~~~~  131 (342)
                      ...+++++..... ...++|++||+..+.......+...+.+++|+|+.  ++.+. +   ..|++||+.+++... +..
T Consensus       143 ~~~l~~~s~~~~~-~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~  220 (415)
T 2hqs_A          143 RTRIAYVVQTNGG-QFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS  220 (415)
T ss_dssp             TCEEEEEEECSSS-SCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EEC
T ss_pred             CCEEEEEEecCCC-CccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eec
Confidence            4556666542100 00179999999865544444566789999999886  44444 4   399999999887653 433


Q ss_pred             CCCCceEEEEeeCCCccEEEEeCC-CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC-Cc-EEEEEE
Q 019349          132 VPNLKGLCAFSPSLNACFLAVPAS-TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ-GT-IIRVFL  208 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d-g~-~irlwd  208 (342)
                      +.  ..+.+++++|++..|++.+. +.+..|.+||+.+++. ..+..|...+.+++|+|||++|++++.+ |. .|.+||
T Consensus       221 ~~--~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d  297 (415)
T 2hqs_A          221 FP--RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVN  297 (415)
T ss_dssp             CS--SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             CC--CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEE
Confidence            32  35677888899988885432 2245699999998765 5677888999999999999999998864 42 246789


Q ss_pred             cCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC---CcEEEEecCCCCCCCCCCCcccccccccccccccccc
Q 019349          209 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLD  285 (342)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (342)
                      +.+++. ..+..  +...+.+++|+||++   +|++++.+   ..|++||+++.+...        +... .......|+
T Consensus       298 ~~~~~~-~~l~~--~~~~~~~~~~spdG~---~l~~~~~~~g~~~i~~~d~~~~~~~~--------l~~~-~~~~~~~~s  362 (415)
T 2hqs_A          298 INGGAP-QRITW--EGSQNQDADVSSDGK---FMVMVSSNGGQQHIAKQDLATGGVQV--------LSST-FLDETPSLA  362 (415)
T ss_dssp             TTSSCC-EECCC--SSSEEEEEEECTTSS---EEEEEEECSSCEEEEEEETTTCCEEE--------CCCS-SSCEEEEEC
T ss_pred             CCCCCE-EEEec--CCCcccCeEECCCCC---EEEEEECcCCceEEEEEECCCCCEEE--------ecCC-CCcCCeEEc
Confidence            988764 33322  234688999999999   88888764   589999998764311        1100 011123455


Q ss_pred             ccccceeeeccCCCccccEEEEEEeCC---cEEEEEE
Q 019349          286 PADHHVLRNAFPAGVKRASVSVITYNG---YFVEYIF  319 (342)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~~~~~dg---~v~~~~~  319 (342)
                      |+              +..|++++.|+   .|++|++
T Consensus       363 pd--------------g~~l~~~s~~~~~~~l~~~d~  385 (415)
T 2hqs_A          363 PN--------------GTMVIYSSSQGMGSVLNLVST  385 (415)
T ss_dssp             TT--------------SSEEEEEEEETTEEEEEEEET
T ss_pred             CC--------------CCEEEEEEcCCCccEEEEEEC
Confidence            54              47888888876   5666654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=4.7e-20  Score=163.82  Aligned_cols=277  Identities=10%  Similarity=0.028  Sum_probs=181.3

Q ss_pred             EEEcCCCCE-EEEEcCCc-EEEEeCCCCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE-
Q 019349           13 VSFNQDNSG-FALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA-   87 (342)
Q Consensus        13 l~fs~d~~~-la~g~~~g-~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~-   87 (342)
                      ..|.+++++ ++++..++ +++||+.++++......  ... .+.+.++++.+++++.      .++.|.+||..+++. 
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~------~~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSD------FCQTLVQIETQLEPPK   75 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEES------TTCEEEEEECSSSSCE
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeC------CCCeEEEEECCCCcee
Confidence            456777766 45555554 79999999987655443  233 6667777777777765      378999999999987 


Q ss_pred             EEEEecCCceEE-EEEcCCeEEE-EE-CC----eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349           88 LRELNFLTSILA-VRLNKKRLVI-VL-RE----KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (342)
Q Consensus        88 ~~~~~~~~~v~~-i~~~~~~~~~-~~-d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~  160 (342)
                      ...+........ ++++++...+ +. ++    .|++||+.+++.+..+.....   ...++++|++.++++++. .++.
T Consensus        76 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~spdg~~l~~~~~-~~~~  151 (331)
T 3u4y_A           76 VVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD---AVGIAISPNGNGLILIDR-SSAN  151 (331)
T ss_dssp             EEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT---EEEEEECTTSSCEEEEEE-TTTT
T ss_pred             EEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC---ccceEECCCCCEEEEEec-CCCc
Confidence            666666555555 8998874322 33 33    899999999988888765443   356777888876665553 3566


Q ss_pred             -EEEEEccCCcee----EEEecccCCeeEEEECCCCCEEEEEe-CCCcEEEEEEcCCCee---EEEeccCcCceeEEEEE
Q 019349          161 -VLVYNVMELHSH----CEIDAHQAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATK---SYSFRRGTYPSTIFSLS  231 (342)
Q Consensus       161 -i~iwd~~~~~~~----~~~~~h~~~v~~i~~s~dg~~lat~s-~dg~~irlwd~~~~~~---~~~~~~~~~~~~v~~l~  231 (342)
                       |.+|++.....+    .....+...+..++|+|||++|+.++ .+++ |++||+.+++.   +..+..+   ..+..++
T Consensus       152 ~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~d~~~~~~~~~~~~~~~~---~~~~~~~  227 (331)
T 3u4y_A          152 TVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNS-IGILETQNPENITLLNAVGTN---NLPGTIV  227 (331)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTE-EEEEECSSTTSCEEEEEEECS---SCCCCEE
T ss_pred             eEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCe-EEEEECCCCcccceeeeccCC---CCCceEE
Confidence             999998754332    11223445689999999999776665 4565 68999999887   7666533   3467899


Q ss_pred             EecCCCcccEEEEEe-CCCcEEEEecCCCCCCCCCCCcccccccc--ccccccccccccccceeeeccCCCccccEEEEE
Q 019349          232 FGQSMQFQDILVATS-SSGSLHVFSPGFAINQRRGGRTSSILGSI--LPESVNEVLDPADHHVLRNAFPAGVKRASVSVI  308 (342)
Q Consensus       232 fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  308 (342)
                      |+||++   +|++++ .++.|.+||+++.+.....    .+...+  .+.....          ...+.+.+++.+|+++
T Consensus       228 ~spdg~---~l~v~~~~~~~i~~~d~~~~~~~~~~----~~~~~~~~~~~~~~~----------~~~~~~spdg~~l~v~  290 (331)
T 3u4y_A          228 VSRDGS---TVYVLTESTVDVFNFNQLSGTLSFVK----SFGHGLLIDPRPLFG----------ANQMALNKTETKLFIS  290 (331)
T ss_dssp             ECTTSS---EEEEECSSEEEEEEEETTTTEEEEEE----EEECCCCCCCGGGTT----------CCCEEECTTSSEEEEE
T ss_pred             ECCCCC---EEEEEEcCCCEEEEEECCCCceeeec----ccccccccCCCCccc----------ccceEECCCCCEEEEe
Confidence            999998   777665 5788999999876431100    000000  0000000          0122345555788777


Q ss_pred             Ee-CCcEEEEEEec
Q 019349          309 TY-NGYFVEYIFSI  321 (342)
Q Consensus       309 ~~-dg~v~~~~~~~  321 (342)
                      +. +|.+++|++..
T Consensus       291 ~~~~~~v~v~d~~~  304 (331)
T 3u4y_A          291 ANISRELKVFTISG  304 (331)
T ss_dssp             ETTTTEEEEEETTS
T ss_pred             cCCCCcEEEEEecC
Confidence            76 55899998754

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=1.1e-19  Score=161.54  Aligned_cols=242  Identities=11%  Similarity=0.093  Sum_probs=168.3

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-C-cEEEEeCCCCcE-EEEEee-CCEEE-EEEcCCCCeEEEEcCCCCCCCCCC--eEEE
Q 019349            7 SYPVFFVSFNQDNSGFALSTK-D-GFKIFDSSTGRL-CYERAV-GAFSI-VEMLYSSSLLAIVGAGEQPSLSPR--RLCL   79 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~-~-g~~v~d~~~~~~-~~~~~~-~~~~~-~~~~~~~~~~~~~~~g~~~~~~d~--~i~i   79 (342)
                      ..++ +++|+|||++|++++. + .+.+||+.++++ ...... ..... +.+.++++.++ ++.+     .++  .|.+
T Consensus        40 ~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~-~~~~-----~~~~~~i~v  112 (331)
T 3u4y_A           40 YDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAV-TVTG-----LNHPFNMQS  112 (331)
T ss_dssp             CCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEE-ECCC-----SSSSCEEEE
T ss_pred             CCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEE-EecC-----CCCcccEEE
Confidence            3445 9999999997765543 3 479999998876 433322 22233 67777888877 4442     123  9999


Q ss_pred             EECCCCcEEEEEecCCceEEEEEcCCe--EEEEE--CCe-EEEEECCCCceeeEE--eCCCCCceEEEEeeCCCccEEEE
Q 019349           80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--REK-TYIYDANTLAILDTI--DTVPNLKGLCAFSPSLNACFLAV  152 (342)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~-i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~  152 (342)
                      ||+.+++.+..+.......+++++++.  ++++.  ++. +.+|++.....+...  ...........++++|++.++++
T Consensus       113 ~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v  192 (331)
T 3u4y_A          113 YSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFV  192 (331)
T ss_dssp             EETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEE
T ss_pred             EECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEE
Confidence            999999998888887788999999884  55554  467 999999764332111  10011234567778888887666


Q ss_pred             eCCCCccEEEEEEccCCce---eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee--EEEeccC--cCce
Q 019349          153 PASTTKGSVLVYNVMELHS---HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRRG--TYPS  225 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~~---~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~--~~~~~~~--~~~~  225 (342)
                      ++. .++.|.+||+.+++.   +..+..+ ..+..++|+|||++|+.++.....|.+||+.+++.  +..+..+  ..+.
T Consensus       193 ~~~-~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~  270 (331)
T 3u4y_A          193 ANL-IGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR  270 (331)
T ss_dssp             EET-TTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG
T ss_pred             EeC-CCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC
Confidence            654 579999999998887   7777654 56789999999998877665333468999999876  4444322  1111


Q ss_pred             e---EEEEEEecCCCcccEEEEEe-CCCcEEEEecCCCC
Q 019349          226 T---IFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAI  260 (342)
Q Consensus       226 ~---v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~  260 (342)
                      .   ...++|+||++   +|++++ .+++|++||+....
T Consensus       271 ~~~~~~~~~~spdg~---~l~v~~~~~~~v~v~d~~~~~  306 (331)
T 3u4y_A          271 PLFGANQMALNKTET---KLFISANISRELKVFTISGKV  306 (331)
T ss_dssp             GGTTCCCEEECTTSS---EEEEEETTTTEEEEEETTSCE
T ss_pred             CcccccceEECCCCC---EEEEecCCCCcEEEEEecCCc
Confidence            1   35689999998   776555 56799999997654

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.87  E-value=1.3e-20  Score=185.78  Aligned_cols=235  Identities=10%  Similarity=0.029  Sum_probs=169.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-Cc------EEEEeCCCCcEEEEEee--CC------------------------EEEEE
Q 019349            7 SYPVFFVSFNQDNSGFALSTK-DG------FKIFDSSTGRLCYERAV--GA------------------------FSIVE   53 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~-~g------~~v~d~~~~~~~~~~~~--~~------------------------~~~~~   53 (342)
                      ...|.+++|||||++|++++. ++      +++||+.+++.......  ..                        +..+.
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            567999999999999998876 54      79999999865433321  11                        34567


Q ss_pred             EcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC---cEEEEEecCCceEEEEEcCCe--EEEEECCeEEEEECCCCceeeE
Q 019349           54 MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG---TALRELNFLTSILAVRLNKKR--LVIVLREKTYIYDANTLAILDT  128 (342)
Q Consensus        54 ~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~---~~~~~~~~~~~v~~i~~~~~~--~~~~~d~~i~i~d~~~~~~~~~  128 (342)
                      +.++++.+++.+.        ++|.+||+.++   +......+...+..+.|+|++  ++.+.++.|++||+.+++....
T Consensus       116 ~SpDg~~l~~~~~--------~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          116 WSPDAQRLLFPLG--------GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             ECTTSSEEEEEET--------TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTTEEEEC
T ss_pred             ECCCCCEEEEEeC--------CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCCCEEEe
Confidence            7788888887763        69999999988   543333344679999999986  4444588999999998765533


Q ss_pred             EeCCCCCc--------------eEEEEeeCCCccEEEEeCCCCcc---------------------------------EE
Q 019349          129 IDTVPNLK--------------GLCAFSPSLNACFLAVPASTTKG---------------------------------SV  161 (342)
Q Consensus       129 ~~~~~~~~--------------~~~~~~~~~~~~~l~~~~~~~~g---------------------------------~i  161 (342)
                      ...+....              ....++++||+..|+++..  ++                                 .|
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~--d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARI--DESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEE--ECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEE--cCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            22221100              0245677888888888752  33                                 78


Q ss_pred             EEEEccC-CceeEEEe--cccCCeeEEEECCCCCEEEEEeC-----CCcEEEEEEcCCCeeEEEeccCcCce---eEEEE
Q 019349          162 LVYNVME-LHSHCEID--AHQAPLAAIVLSSNGMYIATASE-----QGTIIRVFLVSEATKSYSFRRGTYPS---TIFSL  230 (342)
Q Consensus       162 ~iwd~~~-~~~~~~~~--~h~~~v~~i~~s~dg~~lat~s~-----dg~~irlwd~~~~~~~~~~~~~~~~~---~v~~l  230 (342)
                      .+||+.+ ++......  .|...+..++| |||++|++++.     +.+ |++||+.+++....+..+. ..   .+.++
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~-i~~~d~~~g~~~~~~~~~~-~~~~~~~~~~  342 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLD-LVEVTLASNQQRVLAHETS-PTWVPLHNSL  342 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEE-EEEEETTTCCEEEEEEEEC-SSCCCCCSCC
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEE-EEEEECCCCceEEEEEcCC-CCcCCcCCce
Confidence            8999988 77554332  47788999999 99999998764     344 6899999998765553221 11   24578


Q ss_pred             EEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          231 SFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +|+||++   ++++++.||+++||.++
T Consensus       343 ~~spdg~---~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          343 RFLDDGS---ILWSSERTGFQHLYRID  366 (741)
T ss_dssp             EECTTSC---EEEEECTTSSCEEEEEC
T ss_pred             EECCCCe---EEEEecCCCccEEEEEc
Confidence            9999999   99999999999999876

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=4.3e-20  Score=163.91  Aligned_cols=258  Identities=10%  Similarity=0.054  Sum_probs=180.0

Q ss_pred             CEEEEEcCCc-EEEEeCCCCcEEEEEeeC----CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC
Q 019349           20 SGFALSTKDG-FKIFDSSTGRLCYERAVG----AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL   94 (342)
Q Consensus        20 ~~la~g~~~g-~~v~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~   94 (342)
                      ++|++++.++ +++||+.+++.+.....+    ....+.+.++++.+++++.      .++.|.+||+.+++.+..+...
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~------~~~~v~~~d~~~~~~~~~~~~~   75 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN------KSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET------TTTEEEEEETTTCCEEEEEECC
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC------CCCeEEEEECCCCCeEeeEEcC
Confidence            3566666554 799999999877655432    3555677777777766654      3789999999999988877764


Q ss_pred             C------ceEEEEEcCCe--EEEEE-------------CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           95 T------SILAVRLNKKR--LVIVL-------------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        95 ~------~v~~i~~~~~~--~~~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      .      .+..+.++++.  ++++.             ++.|++||+.+++.+..+.....   ...++++|++.+++++
T Consensus        76 ~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~---~~~~~~s~dg~~l~~~  152 (337)
T 1pby_B           76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQ---ITMLAWARDGSKLYGL  152 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSS---CCCEEECTTSSCEEEE
T ss_pred             CcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCC---cceeEECCCCCEEEEe
Confidence            4      67788898764  44552             48999999999988887765433   3344567777777766


Q ss_pred             CCCCccEEEEEEccCCceeEEEeccc--CCeeEEEECCCCCEEEEEeCCCcE-----------------------EEEEE
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQ--APLAAIVLSSNGMYIATASEQGTI-----------------------IRVFL  208 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~--~~v~~i~~s~dg~~lat~s~dg~~-----------------------irlwd  208 (342)
                      +    +.|.+||+.+++.+..+..+.  .++   .|+|||++|+.++..+..                       +.+||
T Consensus       153 ~----~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  225 (337)
T 1pby_B          153 G----RDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMD  225 (337)
T ss_dssp             S----SSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEE
T ss_pred             C----CeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEe
Confidence            3    679999999998887776544  333   789999987766554432                       47999


Q ss_pred             cCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccc
Q 019349          209 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPAD  288 (342)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (342)
                      +.+++.. .+........+.+++|+||++   +|+++  ++.|++||+++.+....       +. .........|    
T Consensus       226 ~~~~~~~-~~~~~~~~~~~~~~~~s~dg~---~l~~~--~~~v~~~d~~~~~~~~~-------~~-~~~~~~~~~~----  287 (337)
T 1pby_B          226 LETGEMA-MREVRIMDVFYFSTAVNPAKT---RAFGA--YNVLESFDLEKNASIKR-------VP-LPHSYYSVNV----  287 (337)
T ss_dssp             TTTCCEE-EEEEEECSSCEEEEEECTTSS---EEEEE--ESEEEEEETTTTEEEEE-------EE-CSSCCCEEEE----
T ss_pred             CCCCCce-EeecCCCCCceeeEEECCCCC---EEEEe--CCeEEEEECCCCcCcce-------ec-CCCceeeEEE----
Confidence            9998765 332222334578899999999   88887  79999999886543221       00 0000111233    


Q ss_pred             cceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          289 HHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       289 ~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                                .+++++|++++.||.|++|++..
T Consensus       288 ----------s~dg~~l~~~~~~~~i~v~d~~~  310 (337)
T 1pby_B          288 ----------STDGSTVWLGGALGDLAAYDAET  310 (337)
T ss_dssp             ----------CTTSCEEEEESBSSEEEEEETTT
T ss_pred             ----------CCCCCEEEEEcCCCcEEEEECcC
Confidence                      44447899999999999997543

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.87  E-value=3.9e-19  Score=163.68  Aligned_cols=226  Identities=15%  Similarity=0.070  Sum_probs=165.4

Q ss_pred             CCEEEEEcC-------CcEEEEeCCCCcE-EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349           19 NSGFALSTK-------DGFKIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (342)
Q Consensus        19 ~~~la~g~~-------~g~~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~   90 (342)
                      +..++.++.       ..+++||++.... .+..+...+..+.+.++++.+++++...    .+..|++||+.+++....
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~----~~~~i~~~d~~tg~~~~l  218 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVRQV  218 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCcceeeEEcCCCCEEEEEEecC----CCcEEEEEECCCCcEEEe
Confidence            556655443       2479999986543 2334556788888999999998887520    135999999999988765


Q ss_pred             EecCCceEEEEEcCCeE--EEEE--C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc--EEE
Q 019349           91 LNFLTSILAVRLNKKRL--VIVL--R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG--SVL  162 (342)
Q Consensus        91 ~~~~~~v~~i~~~~~~~--~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g--~i~  162 (342)
                      ..+...+.+++|+|+..  ++..  +  ..|++||+.+++. ..+..  +...+..++++|++..|++.+. .+|  .|.
T Consensus       219 ~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~--~~~~~~~~~~spdg~~l~~~s~-~~g~~~i~  294 (415)
T 2hqs_A          219 ASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD--GRSNNTEPTWFPDSQNLAFTSD-QAGRPQVY  294 (415)
T ss_dssp             ECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC--CSSCEEEEEECTTSSEEEEEEC-TTSSCEEE
T ss_pred             ecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC--CCCcccceEECCCCCEEEEEEC-CCCCcEEE
Confidence            55667899999998863  3233  3  3699999998765 33333  2345677888899998887763 244  788


Q ss_pred             EEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCccc
Q 019349          163 VYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  240 (342)
Q Consensus       163 iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg--~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~  240 (342)
                      +||+.+++. ..+..|...+.+++|+|||++|++++.++  ..|++||+.+++.. .+..+  . .+.+++|+||++   
T Consensus       295 ~~d~~~~~~-~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~~~--~-~~~~~~~spdg~---  366 (415)
T 2hqs_A          295 KVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLSST--F-LDETPSLAPNGT---  366 (415)
T ss_dssp             EEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE-ECCCS--S-SCEEEEECTTSS---
T ss_pred             EEECCCCCE-EEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE-EecCC--C-CcCCeEEcCCCC---
Confidence            889888764 44566778899999999999999988751  24689999988763 44332  2 688999999999   


Q ss_pred             EEEEEeCCC---cEEEEecCCCC
Q 019349          241 ILVATSSSG---SLHVFSPGFAI  260 (342)
Q Consensus       241 ~l~~~s~dg---~i~vwd~~~~~  260 (342)
                      +|++++.++   .|++||++...
T Consensus       367 ~l~~~s~~~~~~~l~~~d~~g~~  389 (415)
T 2hqs_A          367 MVIYSSSQGMGSVLNLVSTDGRF  389 (415)
T ss_dssp             EEEEEEEETTEEEEEEEETTSCC
T ss_pred             EEEEEEcCCCccEEEEEECCCCc
Confidence            899988877   79999987543

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.86  E-value=1.3e-19  Score=160.73  Aligned_cols=240  Identities=9%  Similarity=0.036  Sum_probs=173.2

Q ss_pred             CeEEEEEcCCCCEEEE-EcCCc-EEEEeCCCCcEEEEEeeC-------CEEEEEEcCCCCeEEEEcCCC---CCCC--CC
Q 019349            9 PVFFVSFNQDNSGFAL-STKDG-FKIFDSSTGRLCYERAVG-------AFSIVEMLYSSSLLAIVGAGE---QPSL--SP   74 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~-g~~~g-~~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~---~~~~--~d   74 (342)
                      .+.+++|+|||+++++ +..++ +.+||+.+++.+.....+       ....+.+.++++.++++..+.   ....  .+
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~  114 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQP  114 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccC
Confidence            4788999999987654 44444 799999998776544321       233456667777777664100   0000  26


Q ss_pred             CeEEEEECCCCcEEEEEecCCceEEEEEcCCeE-EEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           75 RRLCLFNTTTGTALRELNFLTSILAVRLNKKRL-VIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      +.|.+||+.+++.+..+.....+.++.++++.. +++.++.|++||+.+++.+..+.........   .++|++..++..
T Consensus       115 ~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~---~~s~dg~~l~~~  191 (337)
T 1pby_B          115 TRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET---YAQPDVLAVWNQ  191 (337)
T ss_dssp             CEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTT---BCCCBCCCCCCC
T ss_pred             ceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEeCCeEEEEECCCCcEeeeeeccccCCCc---eeCCCccEEeee
Confidence            899999999999888887777788899988753 3344889999999999888777654422222   345555555444


Q ss_pred             CCCCcc-----------------------EEEEEEccCCcee-EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEc
Q 019349          154 ASTTKG-----------------------SVLVYNVMELHSH-CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLV  209 (342)
Q Consensus       154 ~~~~~g-----------------------~i~iwd~~~~~~~-~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~  209 (342)
                      +. .++                       .|.+||+.+++.. ..+..|...+.+++|+|||++|+++  ++. |++||+
T Consensus       192 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~-v~~~d~  267 (337)
T 1pby_B          192 HE-SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA--YNV-LESFDL  267 (337)
T ss_dssp             CT-TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE--ESE-EEEEET
T ss_pred             cc-CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe--CCe-EEEEEC
Confidence            32 222                       5789999988764 3344567788999999999999988  566 589999


Q ss_pred             CCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          210 SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      .+++.+..+..+   ..+.+++|+||++   +|++++.++.|++||+++.+.
T Consensus       268 ~~~~~~~~~~~~---~~~~~~~~s~dg~---~l~~~~~~~~i~v~d~~~~~~  313 (337)
T 1pby_B          268 EKNASIKRVPLP---HSYYSVNVSTDGS---TVWLGGALGDLAAYDAETLEK  313 (337)
T ss_dssp             TTTEEEEEEECS---SCCCEEEECTTSC---EEEEESBSSEEEEEETTTCCE
T ss_pred             CCCcCcceecCC---CceeeEEECCCCC---EEEEEcCCCcEEEEECcCCcE
Confidence            999888777533   3467899999999   899999999999999987654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.86  E-value=1.7e-20  Score=184.27  Aligned_cols=243  Identities=11%  Similarity=-0.010  Sum_probs=167.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeC-----CEEEEEEcCCCCeEEEEcCCCCC--CCCCCeEEEE
Q 019349            8 YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVG-----AFSIVEMLYSSSLLAIVGAGEQP--SLSPRRLCLF   80 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~--~~~d~~i~iw   80 (342)
                      ..+.+++|+|||++++++.+..+++||+.+++.......+     .+..+.+.++++.+++.+.....  ...++.+.+|
T Consensus        17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4577899999999877754445899999988765444332     26678888999998888653211  1124789999


Q ss_pred             ECCCCcEEEEEecC----CceEEEEEcCCe--EEEEECCeEEEEECCCCceeeEEeCCCCCc----------------eE
Q 019349           81 NTTTGTALRELNFL----TSILAVRLNKKR--LVIVLREKTYIYDANTLAILDTIDTVPNLK----------------GL  138 (342)
Q Consensus        81 d~~~~~~~~~~~~~----~~v~~i~~~~~~--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----------------~~  138 (342)
                      |+.+++. ..+...    ..+..++|+|++  ++.+.++.|++||+.+++..+....+....                ..
T Consensus        97 d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~  175 (723)
T 1xfd_A           97 KIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTH  175 (723)
T ss_dssp             ESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSS
T ss_pred             ECCCCce-EeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCc
Confidence            9998876 333221    137788999875  555558899999999887655443322211                12


Q ss_pred             EEEeeCCCccEEEEeCCCC--------------------------------ccEEEEEEccCCceeEEEecc------cC
Q 019349          139 CAFSPSLNACFLAVPASTT--------------------------------KGSVLVYNVMELHSHCEIDAH------QA  180 (342)
Q Consensus       139 ~~~~~~~~~~~l~~~~~~~--------------------------------~g~i~iwd~~~~~~~~~~~~h------~~  180 (342)
                      .+++++||+..|++++.+.                                +..|.+||+.+++....+..|      ..
T Consensus       176 ~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~  255 (723)
T 1xfd_A          176 IAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREY  255 (723)
T ss_dssp             EEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSE
T ss_pred             ceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccc
Confidence            5678889999998875210                                238999999988765666654      56


Q ss_pred             CeeEEEECCCCCEEEEEeCCC---cEEEEEEcCCCeeEEEeccCcCceeE----EEEEEecCCCcccEEEE--EeCCC--
Q 019349          181 PLAAIVLSSNGMYIATASEQG---TIIRVFLVSEATKSYSFRRGTYPSTI----FSLSFGQSMQFQDILVA--TSSSG--  249 (342)
Q Consensus       181 ~v~~i~~s~dg~~lat~s~dg---~~irlwd~~~~~~~~~~~~~~~~~~v----~~l~fs~d~~~~~~l~~--~s~dg--  249 (342)
                      .+..++|||||++|++.+.++   ..|++||+.+++....+..+ +...+    ..++||||++   .|+.  +..++  
T Consensus       256 ~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-~~~~~~~~~~~~~~spdg~---~l~~~~~~~~~~~  331 (723)
T 1xfd_A          256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGR---KFFFIRAIPQGGR  331 (723)
T ss_dssp             EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSC---SEEEEEEECCSSS
T ss_pred             eeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEec-cCCEEeccCCCceEcCCCC---eEEEEEecccCCC
Confidence            799999999999998775432   34689999998865544321 11222    3689999998   6665  45666  


Q ss_pred             ----cEEEEe
Q 019349          250 ----SLHVFS  255 (342)
Q Consensus       250 ----~i~vwd  255 (342)
                          .|.+||
T Consensus       332 ~~~~~l~~~d  341 (723)
T 1xfd_A          332 GKFYHITVSS  341 (723)
T ss_dssp             SCEEEEEEEC
T ss_pred             cceeEEEEEe
Confidence                456666

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.86  E-value=6.2e-19  Score=156.78  Aligned_cols=270  Identities=11%  Similarity=0.098  Sum_probs=169.8

Q ss_pred             EEEEcCC-cEEEEeCC-CCcE--EEEE-eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC--CCc--EEEEEe
Q 019349           22 FALSTKD-GFKIFDSS-TGRL--CYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT--TGT--ALRELN   92 (342)
Q Consensus        22 la~g~~~-g~~v~d~~-~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~--~~~--~~~~~~   92 (342)
                      +++++.+ .+++|+++ +++.  .... +...+..+.+.++++.+++++.      .++.|.+|++.  +++  .+..+.
T Consensus         8 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~------~~~~v~~~~~~~~~~~~~~~~~~~   81 (343)
T 1ri6_A            8 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR------PEFRVLAYRIAPDDGALTFAAESA   81 (343)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET------TTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeec------CCCeEEEEEecCCCCceeeccccc
Confidence            3443544 47999985 3432  2222 2344556778888888877765      25899999987  555  344555


Q ss_pred             cCCceEEEEEcCCe--EEEEE--CCeEEEEECCC---CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEE
Q 019349           93 FLTSILAVRLNKKR--LVIVL--REKTYIYDANT---LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYN  165 (342)
Q Consensus        93 ~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd  165 (342)
                      ....+..++++++.  ++++.  ++.|++||+.+   .+.+..+....   .+.+++++|++..+++++. .++.|.+||
T Consensus        82 ~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~-~~~~v~~~d  157 (343)
T 1ri6_A           82 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLD---GCHSANISPDNRTLWVPAL-KQDRICLFT  157 (343)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCT---TBCCCEECTTSSEEEEEEG-GGTEEEEEE
T ss_pred             cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCC---CceEEEECCCCCEEEEecC-CCCEEEEEE
Confidence            55688899998875  44455  67899999943   33444443332   2445567778877776653 479999999


Q ss_pred             ccC-CceeE----EEec-ccCCeeEEEECCCCCEEEEEe-CCCcEEEEEEcCC--Cee--EEEec---cC-cCceeEEEE
Q 019349          166 VME-LHSHC----EIDA-HQAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVSE--ATK--SYSFR---RG-TYPSTIFSL  230 (342)
Q Consensus       166 ~~~-~~~~~----~~~~-h~~~v~~i~~s~dg~~lat~s-~dg~~irlwd~~~--~~~--~~~~~---~~-~~~~~v~~l  230 (342)
                      +.+ ++...    .+.. ....+.+++|+|+|++|+.++ .+++ +++||+..  ++.  ...+.   .+ .....+.++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~-i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i  236 (343)
T 1ri6_A          158 VSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSS-VDVWELKDPHGNIECVQTLDMMPENFSDTRWAADI  236 (343)
T ss_dssp             ECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTE-EEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEE
T ss_pred             ecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCE-EEEEEecCCCCcEEEEeeccccCccccccCCccce
Confidence            987 54332    2333 345788999999999876665 6666 68999953  432  22221   11 012246789


Q ss_pred             EEecCCCcccEEE-EEeCCCcEEEEecCCCCCCCCCCCccccccccc--cccccccccccccceeeeccCCCccccEEEE
Q 019349          231 SFGQSMQFQDILV-ATSSSGSLHVFSPGFAINQRRGGRTSSILGSIL--PESVNEVLDPADHHVLRNAFPAGVKRASVSV  307 (342)
Q Consensus       231 ~fs~d~~~~~~l~-~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  307 (342)
                      +|+||++   +|+ +...++.|++||++......      ..+..+.  .......|              .++++.|++
T Consensus       237 ~~s~dg~---~l~v~~~~~~~i~v~d~~~~~~~~------~~~~~~~~~~~~~~~~~--------------s~dg~~l~~  293 (343)
T 1ri6_A          237 HITPDGR---HLYACDRTASLITVFSVSEDGSVL------SKEGFQPTETQPRGFNV--------------DHSGKYLIA  293 (343)
T ss_dssp             EECTTSS---EEEEEETTTTEEEEEEECTTSCCE------EEEEEEECSSSCCCEEE--------------CTTSSEEEE
T ss_pred             EECCCCC---EEEEEecCCCEEEEEEEcCCCCce------EEeeeecCCCccceEEE--------------CCCCCEEEE
Confidence            9999998   666 45578999999997321100      0010000  00111233              344477888


Q ss_pred             EE-eCCcEEEEEEecCCCC
Q 019349          308 IT-YNGYFVEYIFSINNCC  325 (342)
Q Consensus       308 ~~-~dg~v~~~~~~~~~~~  325 (342)
                      ++ .||.+.+|+++++.+.
T Consensus       294 ~~~~~~~v~v~~~d~~~g~  312 (343)
T 1ri6_A          294 AGQKSHHISVYEIVGEQGL  312 (343)
T ss_dssp             ECTTTCEEEEEEEETTTTE
T ss_pred             ecCCCCeEEEEEEcCCCce
Confidence            88 5899999999876553

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.85  E-value=3.6e-19  Score=158.33  Aligned_cols=237  Identities=13%  Similarity=0.112  Sum_probs=162.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC--cEEEEeCC--CCcEE--EEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKD--GFKIFDSS--TGRLC--YERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~--g~~v~d~~--~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      +...+.+++|+|+|++|++++.+  .+++|+++  +++..  .... .+.+..+.+.++++.+++.+.      .++.|.
T Consensus        36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~------~~~~i~  109 (343)
T 1ri6_A           36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY------NAGNVS  109 (343)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET------TTTEEE
T ss_pred             cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEec------CCCeEE
Confidence            44578899999999988877663  47999987  55533  2222 134455677778887777664      378999


Q ss_pred             EEEC---CCCcEEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEECCC-Cceee----EEeCCCCCceEEEEeeCCC
Q 019349           79 LFNT---TTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANT-LAILD----TIDTVPNLKGLCAFSPSLN  146 (342)
Q Consensus        79 iwd~---~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~-~~~~~----~~~~~~~~~~~~~~~~~~~  146 (342)
                      +||+   .+++.+..+.....+.+++++++.  ++++.  ++.|++||+.+ ++...    .+.... ......++++|+
T Consensus       110 ~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pd  188 (343)
T 1ri6_A          110 VTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHPN  188 (343)
T ss_dssp             EEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECTT
T ss_pred             EEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECCC
Confidence            9999   444455555556678889998874  45554  68999999987 54432    222222 234556778888


Q ss_pred             ccEEEEeCCCCccEEEEEEccC--Cce--eEEEe---c-c--cCCeeEEEECCCCCEEEEEe-CCCcEEEEEEcC--CC-
Q 019349          147 ACFLAVPASTTKGSVLVYNVME--LHS--HCEID---A-H--QAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVS--EA-  212 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~--~~~--~~~~~---~-h--~~~v~~i~~s~dg~~lat~s-~dg~~irlwd~~--~~-  212 (342)
                      +.++++++. .++.|.+||+..  ++.  ...+.   . |  ...+..++|+|+|++|+.+. .++. |++||+.  ++ 
T Consensus       189 g~~l~~~~~-~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~-i~v~d~~~~~~~  266 (343)
T 1ri6_A          189 EQYAYCVNE-LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASL-ITVFSVSEDGSV  266 (343)
T ss_dssp             SSEEEEEET-TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTE-EEEEEECTTSCC
T ss_pred             CCEEEEEeC-CCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCE-EEEEEEcCCCCc
Confidence            887766554 579999999953  332  22222   1 1  23566899999999887554 6776 6899998  33 


Q ss_pred             -eeEEEeccCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecC
Q 019349          213 -TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPG  257 (342)
Q Consensus       213 -~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~  257 (342)
                       +.+..+..+   ..+.+++|+|+++   +|++++ .++.|.+|+++
T Consensus       267 ~~~~~~~~~~---~~~~~~~~s~dg~---~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          267 LSKEGFQPTE---TQPRGFNVDHSGK---YLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEEEEEECS---SSCCCEEECTTSS---EEEEECTTTCEEEEEEEE
T ss_pred             eEEeeeecCC---CccceEEECCCCC---EEEEecCCCCeEEEEEEc
Confidence             344444322   2277899999998   888887 68999999765

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.85  E-value=2.2e-19  Score=160.25  Aligned_cols=227  Identities=8%  Similarity=0.051  Sum_probs=165.4

Q ss_pred             EEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeC---CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349           12 FVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG---AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (342)
Q Consensus        12 ~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~   87 (342)
                      .+++++++.++++++.++ +.+||+.+++.+.....+   ....+.+.++++.+++.+.      .++.|.+||+.+++.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~------~~~~i~~~d~~t~~~   77 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTCKN   77 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTTTEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC------CCCcEEEEeCCCCcE
Confidence            457888998888876665 799999999876554432   3455677777776666654      378999999999998


Q ss_pred             EEEEecCC-------ceEEEEEcCCe--EEEEE-C------------CeEEEEECCCCce---eeEEeCCCCCceEEEEe
Q 019349           88 LRELNFLT-------SILAVRLNKKR--LVIVL-R------------EKTYIYDANTLAI---LDTIDTVPNLKGLCAFS  142 (342)
Q Consensus        88 ~~~~~~~~-------~v~~i~~~~~~--~~~~~-d------------~~i~i~d~~~~~~---~~~~~~~~~~~~~~~~~  142 (342)
                      +..+....       .+..+.++++.  ++++. +            +.|++||+.+++.   +..+..+   ..+.+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~  154 (349)
T 1jmx_B           78 TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMR  154 (349)
T ss_dssp             EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEE
T ss_pred             EEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---Cccccee
Confidence            88777543       27788998874  45444 3            8999999988543   3334332   2355566


Q ss_pred             eCCCccEEEEeCCCCccEEEEEEccCCceeEEEeccc-------------------------------------------
Q 019349          143 PSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ-------------------------------------------  179 (342)
Q Consensus       143 ~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~-------------------------------------------  179 (342)
                      ++|++. +++.+    +.|.+||+.+++.+..+..+.                                           
T Consensus       155 ~s~dg~-l~~~~----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  229 (349)
T 1jmx_B          155 AADDGS-LYVAG----PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA  229 (349)
T ss_dssp             ECTTSC-EEEES----SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCC
T ss_pred             ECCCCc-EEEcc----CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCcccc
Confidence            777777 44444    239999999888776654331                                           


Q ss_pred             -------------------------CCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe
Q 019349          180 -------------------------APLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       180 -------------------------~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs  233 (342)
                                               ..+..++|+| ||++|+++  ++. |.+||+.+++.+..+..+   ..+.+++|+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~-v~~~d~~~~~~~~~~~~~---~~~~~~~~s  303 (349)
T 1jmx_B          230 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNR-LAKYDLKQRKLIKAANLD---HTYYCVAFD  303 (349)
T ss_dssp             EEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESE-EEEEETTTTEEEEEEECS---SCCCEEEEC
T ss_pred             ccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCe-EEEEECccCeEEEEEcCC---CCccceEEC
Confidence                                     1345678889 99999988  666 579999999988777533   236789999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      ||++   +|++++.++.|++||+++.+.
T Consensus       304 ~dg~---~l~~~~~~~~v~v~d~~~~~~  328 (349)
T 1jmx_B          304 KKGD---KLYLGGTFNDLAVFNPDTLEK  328 (349)
T ss_dssp             SSSS---CEEEESBSSEEEEEETTTTEE
T ss_pred             CCCC---EEEEecCCCeEEEEeccccce
Confidence            9998   788888899999999987654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=3.8e-19  Score=174.36  Aligned_cols=237  Identities=16%  Similarity=0.081  Sum_probs=163.8

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEE-eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC--
Q 019349            8 YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT--   84 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~--   84 (342)
                      ..|.+++|||| ..++.+.+..+++||+.+++..... ....+..+.+.++++.++++.        ++.|.+||+.+  
T Consensus        82 ~~v~~~~~spd-~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~--------~~~i~v~~~~~~~  152 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFTQGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVR--------NHNLYIARGGKLG  152 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEETTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEE--------TTEEEEEECBCTT
T ss_pred             cCceeEEECCC-CeEEEEECCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEE--------CCeEEEEecCccc
Confidence            57999999999 7777777777899999988654332 224455567888888888863        57999999988  


Q ss_pred             ---CcEEEEEecCCc---------------eEEEEEcCCe--EEEEE-C-------------------------------
Q 019349           85 ---GTALRELNFLTS---------------ILAVRLNKKR--LVIVL-R-------------------------------  112 (342)
Q Consensus        85 ---~~~~~~~~~~~~---------------v~~i~~~~~~--~~~~~-d-------------------------------  112 (342)
                         ++..........               +.++.|+|+.  ++.+. |                               
T Consensus       153 ~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~  232 (706)
T 2z3z_A          153 EGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPS  232 (706)
T ss_dssp             SCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCC
T ss_pred             ccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCC
Confidence               776543332222               4789999875  33333 1                               


Q ss_pred             --CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC---CccEEEEEEccCCceeEEEe--cccC---Ce
Q 019349          113 --EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST---TKGSVLVYNVMELHSHCEID--AHQA---PL  182 (342)
Q Consensus       113 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~g~i~iwd~~~~~~~~~~~--~h~~---~v  182 (342)
                        ..|++||+.+++.........+...+..++++||+..|++...+   ....|.+||+.+++....+.  .+..   .+
T Consensus       233 ~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~  312 (706)
T 2z3z_A          233 HHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPL  312 (706)
T ss_dssp             CEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCC
T ss_pred             CeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECcc
Confidence              47999999988654332222334567788889999988876521   12489999999984433332  2222   35


Q ss_pred             eEEEECC--CCCEEEEEeCCCcEEEEEEcC-CCeeEEEeccCcCceeEEE-EEEecCCCcccEEEEEeC-CC----cEEE
Q 019349          183 AAIVLSS--NGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTYPSTIFS-LSFGQSMQFQDILVATSS-SG----SLHV  253 (342)
Q Consensus       183 ~~i~~s~--dg~~lat~s~dg~~irlwd~~-~~~~~~~~~~~~~~~~v~~-l~fs~d~~~~~~l~~~s~-dg----~i~v  253 (342)
                      .+++|+|  ||++|++++.||. ++||++. +++.+..+..+  ...+.+ ++|+||++   .|+.++. ++    .|..
T Consensus       313 ~~~~~sp~~dg~~l~~~~~~g~-~~l~~~~~~~~~~~~l~~~--~~~v~~~~~~spdg~---~l~~~~~~~~~~~~~l~~  386 (706)
T 2z3z_A          313 HPLTFLPGSNNQFIWQSRRDGW-NHLYLYDTTGRLIRQVTKG--EWEVTNFAGFDPKGT---RLYFESTEASPLERHFYC  386 (706)
T ss_dssp             SCCEECTTCSSEEEEEECTTSS-CEEEEEETTSCEEEECCCS--SSCEEEEEEECTTSS---EEEEEESSSCTTCBEEEE
T ss_pred             CCceeecCCCCEEEEEEccCCc-cEEEEEECCCCEEEecCCC--CeEEEeeeEEcCCCC---EEEEEecCCCCceEEEEE
Confidence            7789999  9999999999987 4899886 66666666443  334665 79999998   6765554 44    4566


Q ss_pred             EecCCC
Q 019349          254 FSPGFA  259 (342)
Q Consensus       254 wd~~~~  259 (342)
                      ||+++.
T Consensus       387 ~d~~~~  392 (706)
T 2z3z_A          387 IDIKGG  392 (706)
T ss_dssp             EETTCC
T ss_pred             EEcCCC
Confidence            666544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.84  E-value=3.6e-18  Score=152.70  Aligned_cols=247  Identities=10%  Similarity=0.002  Sum_probs=177.5

Q ss_pred             CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEECCC
Q 019349           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDANT  122 (342)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~  122 (342)
                      .....+.+.++++.+++.+.+..+...+++|.+||..+++.+..+.....+..+.++++.  ++++.  ++.|.+||..+
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~  120 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDLKPFGATINNTTQTLWFGNTVNSAVTAIDAKT  120 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESSCCCSEEEETTTTEEEEEETTTTEEEEEETTT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCCCcceEEECCCCCEEEEEecCCCEEEEEeCCC
Confidence            455667777888888776643111112679999999999999988877778888888763  55555  57999999999


Q ss_pred             CceeeEEeCCCCC-------ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEE
Q 019349          123 LAILDTIDTVPNL-------KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIA  195 (342)
Q Consensus       123 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~la  195 (342)
                      ++.+..+..+...       .....+..+|++..+++++...++.|.+||+.+++.+..+..+...+.+++|+|||++|+
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~  200 (353)
T 3vgz_A          121 GEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLY  200 (353)
T ss_dssp             CCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEE
T ss_pred             CeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEE
Confidence            9988888764322       135566777777776665521478999999999998888876677789999999999999


Q ss_pred             EEeCCCcEEEEEEcCCCeeEEEeccCc--CceeEEEEEEecCCCcccEEEEEeC-CCcEEEEecCCCCCCCCCCCccccc
Q 019349          196 TASEQGTIIRVFLVSEATKSYSFRRGT--YPSTIFSLSFGQSMQFQDILVATSS-SGSLHVFSPGFAINQRRGGRTSSIL  272 (342)
Q Consensus       196 t~s~dg~~irlwd~~~~~~~~~~~~~~--~~~~v~~l~fs~d~~~~~~l~~~s~-dg~i~vwd~~~~~~~~~~~~~~~~~  272 (342)
                      +++.++.+ .+||+.+++.+..+..+.  ....+.+++|+|+++   +|++++. ++.|++||+++.+......      
T Consensus       201 ~~~~~~~i-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~~~~~~~v~~~d~~~~~~~~~~~------  270 (353)
T 3vgz_A          201 TTNADGEL-ITIDTADNKILSRKKLLDDGKEHFFINISLDTARQ---RAFITDSKAAEVLVVDTRNGNILAKVA------  270 (353)
T ss_dssp             EECTTSEE-EEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTT---EEEEEESSSSEEEEEETTTCCEEEEEE------
T ss_pred             EEcCCCeE-EEEECCCCeEEEEEEcCCCCCCcccceEEECCCCC---EEEEEeCCCCEEEEEECCCCcEEEEEE------
Confidence            99999875 699999999887775422  133478899999998   7766665 5899999997765422100      


Q ss_pred             cccccccccccccccccceeeeccCCCccccEEEEEE-eCCcEEEEEEe
Q 019349          273 GSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT-YNGYFVEYIFS  320 (342)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~~~~~~  320 (342)
                         .+......|+              ++++++++.+ .++.|++|+..
T Consensus       271 ---~~~~~~~~~s--------------~dg~~l~v~~~~~~~v~~~d~~  302 (353)
T 3vgz_A          271 ---APESLAVLFN--------------PARNEAYVTHRQAGKVSVIDAK  302 (353)
T ss_dssp             ---CSSCCCEEEE--------------TTTTEEEEEETTTTEEEEEETT
T ss_pred             ---cCCCceEEEC--------------CCCCEEEEEECCCCeEEEEECC
Confidence               0111112333              3346676666 58888888653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.83  E-value=3.1e-19  Score=174.96  Aligned_cols=234  Identities=10%  Similarity=0.033  Sum_probs=159.9

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcE--EEEEe-e-----------------CCEEEEEEcCCCCeEEEEcCCC
Q 019349            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRL--CYERA-V-----------------GAFSIVEMLYSSSLLAIVGAGE   68 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~--~~~~~-~-----------------~~~~~~~~~~~~~~~~~~~~g~   68 (342)
                      .+..++|.  |+.++.++.+++ +||+.+++.  ..-.. .                 ..+..+.+.++ +.+++..   
T Consensus        27 ~~~~~~w~--g~~~~~~~~~~i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~~---   99 (706)
T 2z3z_A           27 YVVGLQWM--GDNYVFIEGDDL-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLFT---   99 (706)
T ss_dssp             -CTTCEEE--TTEEEEEETTEE-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEEE---
T ss_pred             cCCCCcCc--CCeEEEEeCCcE-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEEE---
Confidence            34557777  556666667789 999998865  21111 1                 34666777777 6666553   


Q ss_pred             CCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEECCeEEEEECCC-----CceeeEEeCCCCCc-----
Q 019349           69 QPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVLREKTYIYDANT-----LAILDTIDTVPNLK-----  136 (342)
Q Consensus        69 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~d~~i~i~d~~~-----~~~~~~~~~~~~~~-----  136 (342)
                           +++|++||+.+++..........+.+++|+|++  ++.+.++.|++||+.+     ++............     
T Consensus       100 -----~~~i~~~d~~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~  174 (706)
T 2z3z_A          100 -----QGGLVGFDMLARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQA  174 (706)
T ss_dssp             -----TTEEEEEETTTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSC
T ss_pred             -----CCEEEEEECCCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccc
Confidence                 579999999998776666566678889999875  4444589999999988     65543222211100     


Q ss_pred             -------eEEEEeeCCCccEEEEeCC-------------------------------CCccEEEEEEccCCceeEEE--e
Q 019349          137 -------GLCAFSPSLNACFLAVPAS-------------------------------TTKGSVLVYNVMELHSHCEI--D  176 (342)
Q Consensus       137 -------~~~~~~~~~~~~~l~~~~~-------------------------------~~~g~i~iwd~~~~~~~~~~--~  176 (342)
                             .+.++.++||+.+|++++.                               ..+..|.+||+.+++.....  .
T Consensus       175 ~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~  254 (706)
T 2z3z_A          175 VHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGE  254 (706)
T ss_dssp             CGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCS
T ss_pred             hhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCC
Confidence                   1256778889999988751                               13578999999988765433  2


Q ss_pred             cccCCeeEEEECCCCCEEEEEeCCC----cEEEEEEcCCCeeEEEeccCcCce---eEEEEEEec--CCCcccEEEEEeC
Q 019349          177 AHQAPLAAIVLSSNGMYIATASEQG----TIIRVFLVSEATKSYSFRRGTYPS---TIFSLSFGQ--SMQFQDILVATSS  247 (342)
Q Consensus       177 ~h~~~v~~i~~s~dg~~lat~s~dg----~~irlwd~~~~~~~~~~~~~~~~~---~v~~l~fs~--d~~~~~~l~~~s~  247 (342)
                      .|...+.+++|+|||++|++++.++    ..|++||+.+++....+.......   .+.+++|+|  |++   +|++++.
T Consensus       255 ~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~---~l~~~~~  331 (706)
T 2z3z_A          255 PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQ---FIWQSRR  331 (706)
T ss_dssp             CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSE---EEEEECT
T ss_pred             CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCE---EEEEEcc
Confidence            5777899999999999999988775    135899999984433332111111   245789999  998   9999999


Q ss_pred             CCcEEEEecC
Q 019349          248 SGSLHVFSPG  257 (342)
Q Consensus       248 dg~i~vwd~~  257 (342)
                      |+.++||.++
T Consensus       332 ~g~~~l~~~~  341 (706)
T 2z3z_A          332 DGWNHLYLYD  341 (706)
T ss_dssp             TSSCEEEEEE
T ss_pred             CCccEEEEEE
Confidence            9999999886

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.83  E-value=4.3e-19  Score=164.24  Aligned_cols=163  Identities=13%  Similarity=0.130  Sum_probs=119.4

Q ss_pred             EecCCceEEEEEcCCeEEEE----E---CCeEEEEECCCC--------ceeeEEeC-CCCCceEEEEeeCCC-ccEEEEe
Q 019349           91 LNFLTSILAVRLNKKRLVIV----L---REKTYIYDANTL--------AILDTIDT-VPNLKGLCAFSPSLN-ACFLAVP  153 (342)
Q Consensus        91 ~~~~~~v~~i~~~~~~~~~~----~---d~~i~i~d~~~~--------~~~~~~~~-~~~~~~~~~~~~~~~-~~~l~~~  153 (342)
                      +.+...|.+++|+++...++    +   |+.|++||+.+.        +.+..+.. ..+...+.+++++|+ +.+++++
T Consensus        89 ~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~  168 (434)
T 2oit_A           89 VPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVC  168 (434)
T ss_dssp             ECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEE
T ss_pred             ccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEE
Confidence            34456788888887754444    3   678888887653        22233332 123456778888887 6788888


Q ss_pred             CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc-----CceeEE
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-----YPSTIF  228 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~-----~~~~v~  228 (342)
                      +  .||+|++||++++..+....+|...|++++|+|+|++||+|+.||+ |++||++ ++....+..+.     +...|.
T Consensus       169 s--~Dg~v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~-v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~  244 (434)
T 2oit_A          169 L--ADGSIAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGT-VVQYLPT-LQEKKVIPCPPFYESDHPVRVL  244 (434)
T ss_dssp             E--TTSCEEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSC-EEEECTT-CCEEEEECCCTTCCTTSCEEEE
T ss_pred             E--CCCeEEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCc-EEEEccC-CcccccccCCcccCCCCceeEE
Confidence            7  6899999999998777777789999999999999999999999998 5899998 55555553321     123699


Q ss_pred             EEEEecCCCcccEEEEE-eCCC------cEEEEecCCCC
Q 019349          229 SLSFGQSMQFQDILVAT-SSSG------SLHVFSPGFAI  260 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~-s~dg------~i~vwd~~~~~  260 (342)
                      +++|++++.   ++++. +.+|      .+++|++....
T Consensus       245 ~v~w~~~~~---~l~~~~~~dg~~~~~~~v~i~~l~~~~  280 (434)
T 2oit_A          245 DVLWIGTYV---FAIVYAAADGTLETSPDVVMALLPKKE  280 (434)
T ss_dssp             EEEEEETTE---EEEEEEETTCCSSSCCEEEEEECCCTT
T ss_pred             EEEEecCce---EEEEEccCCCccCCCCceEEEEeccCC
Confidence            999999987   66443 3443      39999998653

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.83  E-value=6.1e-19  Score=173.74  Aligned_cols=234  Identities=6%  Similarity=0.055  Sum_probs=168.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEeCCCC---cEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTG---RLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g~~v~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      .|.+++|||||++|++++...+.+||+.++   +.. ...+...+..+.+.++++.+++++.        +.|.+||+.+
T Consensus       110 ~v~~~~~SpDg~~l~~~~~~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~--------~~i~~~d~~~  181 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLGGELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG--------RNLWVIDLAS  181 (741)
T ss_dssp             ESCCCEECTTSSEEEEEETTEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET--------TEEEEEETTT
T ss_pred             CcceeEECCCCCEEEEEeCCcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC--------CcEEEEecCC
Confidence            478999999999999988877899999887   432 2223356777889999999988863        5899999998


Q ss_pred             CcEEEEEecCCc-----------------eEEEEEcCCe--EEEEE-CC-------------------------------
Q 019349           85 GTALRELNFLTS-----------------ILAVRLNKKR--LVIVL-RE-------------------------------  113 (342)
Q Consensus        85 ~~~~~~~~~~~~-----------------v~~i~~~~~~--~~~~~-d~-------------------------------  113 (342)
                      ++..........                 +.++.|+|+.  ++++. ++                               
T Consensus       182 g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~  261 (741)
T 2ecf_A          182 GRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANV  261 (741)
T ss_dssp             TEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCC
T ss_pred             CCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCC
Confidence            876543322221                 4678999875  44443 43                               


Q ss_pred             --eEEEEECCC-CceeeEEeCCCCCceEEEEeeCCCccEEEEeCC---CCccEEEEEEccCCceeEEEecccC----Cee
Q 019349          114 --KTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS---TTKGSVLVYNVMELHSHCEIDAHQA----PLA  183 (342)
Q Consensus       114 --~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~g~i~iwd~~~~~~~~~~~~h~~----~v~  183 (342)
                        .|++||+.+ ++.........+...+..+++ ||+..|++...   ..+..|.+||+.+++....+..|..    .+.
T Consensus       262 ~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~  340 (741)
T 2ecf_A          262 QVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHN  340 (741)
T ss_dssp             EEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCS
T ss_pred             eeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCC
Confidence              789999988 765433221133455677788 88888886531   1368899999999988777766554    457


Q ss_pred             EEEECCCCCEEEEEeCCCcEEEEEEcC-CCeeEEEeccCcCceeEEEE-EEecCCCcccEEEE-EeCCC--cEEEEecCC
Q 019349          184 AIVLSSNGMYIATASEQGTIIRVFLVS-EATKSYSFRRGTYPSTIFSL-SFGQSMQFQDILVA-TSSSG--SLHVFSPGF  258 (342)
Q Consensus       184 ~i~~s~dg~~lat~s~dg~~irlwd~~-~~~~~~~~~~~~~~~~v~~l-~fs~d~~~~~~l~~-~s~dg--~i~vwd~~~  258 (342)
                      +++|+|||+++++++.||. ++||.+. +++ ...+..+  ...+.++ +|+||++   .|+. ++.++  +++||+++.
T Consensus       341 ~~~~spdg~~~~~~~~~g~-~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~---~l~~~~~~~~~~~~~l~~~~~  413 (741)
T 2ecf_A          341 SLRFLDDGSILWSSERTGF-QHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAG---LAYFRAGIESARESQIYAVPL  413 (741)
T ss_dssp             CCEECTTSCEEEEECTTSS-CEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTT---EEEEEECSSCTTCBEEEEEET
T ss_pred             ceEECCCCeEEEEecCCCc-cEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCC---EEEEEEeCCCCceEEEEEEEc
Confidence            8999999999999999987 4788775 445 5555433  3447776 5999998   6654 45555  899999864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.83  E-value=6.3e-18  Score=151.30  Aligned_cols=235  Identities=11%  Similarity=0.102  Sum_probs=155.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcC----CcEEEEeCCCCcEE--EE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            8 YPVFFVSFNQDNSGFALSTK----DGFKIFDSSTGRLC--YE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~----~g~~v~d~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      ..+..++|+|||+ |++++.    ..+.+|++.+++..  ..  .+......+.+.++++.+++++.      .+++|.+
T Consensus        40 ~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~------~~~~v~v  112 (347)
T 3hfq_A           40 QNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANY------HKGTAEV  112 (347)
T ss_dssp             SCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEET------TTTEEEE
T ss_pred             CCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeC------CCCEEEE
Confidence            4566799999999 554433    34799999877542  22  12344556777888888877764      3789999


Q ss_pred             EECC-CCc--EEEEEecC----------CceEEEEEcCCeEEEEE---CCeEEEEECC-CCceee--EEeCCCCCceEEE
Q 019349           80 FNTT-TGT--ALRELNFL----------TSILAVRLNKKRLVIVL---REKTYIYDAN-TLAILD--TIDTVPNLKGLCA  140 (342)
Q Consensus        80 wd~~-~~~--~~~~~~~~----------~~v~~i~~~~~~~~~~~---d~~i~i~d~~-~~~~~~--~~~~~~~~~~~~~  140 (342)
                      ||+. ++.  .+..+...          ..+.+++++++..+++.   ++.|++|++. ++++..  .+.... ......
T Consensus       113 ~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-g~~p~~  191 (347)
T 3hfq_A          113 MKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEA-GFGPRH  191 (347)
T ss_dssp             EEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCT-TCCEEE
T ss_pred             EEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCC-CCCCce
Confidence            9985 333  33333332          13788999887644444   6699999998 554332  222222 224556


Q ss_pred             EeeCCCccEEEEeCCCCccEEEEEEccC--Cce--eEEEeccc------CCeeEEEECCCCCEEE-EEeCCCcEEEEEEc
Q 019349          141 FSPSLNACFLAVPASTTKGSVLVYNVME--LHS--HCEIDAHQ------APLAAIVLSSNGMYIA-TASEQGTIIRVFLV  209 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~--~~~--~~~~~~h~------~~v~~i~~s~dg~~la-t~s~dg~~irlwd~  209 (342)
                      ++++|++.++++++. .++.|.+|++..  ++.  +..+....      ..+..++|+|||++|+ ++..+++ |++||+
T Consensus       192 ~~~spdg~~l~v~~~-~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~-v~v~~~  269 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGE-LSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNT-LAVFAV  269 (347)
T ss_dssp             EEECTTSSEEEEEET-TTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTE-EEEEEE
T ss_pred             EEECCCCCEEEEEeC-CCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCE-EEEEEE
Confidence            777888887776654 578999999874  442  23333322      3488999999999875 5555676 589999


Q ss_pred             CC-C--eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC-CcEEEEecC
Q 019349          210 SE-A--TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-GSLHVFSPG  257 (342)
Q Consensus       210 ~~-~--~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d-g~i~vwd~~  257 (342)
                      .. +  +.+..+..+  ...+.+++|+||++   +|++++.+ +.|.+|+++
T Consensus       270 ~~~g~~~~~~~~~~~--~~~~~~~~~spdg~---~l~v~~~~~~~v~v~~~d  316 (347)
T 3hfq_A          270 TADGHLTLIQQISTE--GDFPRDFDLDPTEA---FVVVVNQNTDNATLYARD  316 (347)
T ss_dssp             CGGGCEEEEEEEECS--SSCCCEEEECTTSS---EEEEEETTTTEEEEEEEC
T ss_pred             CCCCcEEEeEEEecC--CCCcCeEEECCCCC---EEEEEEcCCCcEEEEEEe
Confidence            73 2  344444321  22467899999999   88888764 899999765

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=6.1e-19  Score=169.23  Aligned_cols=232  Identities=12%  Similarity=0.092  Sum_probs=153.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcC-Cc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE--EEC-
Q 019349            8 YPVFFVSFNQDNSGFALSTK-DG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL--FNT-   82 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~-~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i--wd~-   82 (342)
                      .+|++++|+|||++||.++. ++ ++||+++.++...-...+.-......++++.+++.+....   .+...++  ++. 
T Consensus        22 ~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~---g~~~~~l~~~~~~   98 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSK---GAEQHALFKVNTS   98 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECST---TSCCEEEEEEETT
T ss_pred             cchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCC---CCcceEEEEEecc
Confidence            47999999999999998765 55 6999987665433222221233344444444444332100   1344455  444 


Q ss_pred             CCCcEEEEEecCC--ceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC--
Q 019349           83 TTGTALRELNFLT--SILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST--  156 (342)
Q Consensus        83 ~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--  156 (342)
                      ..+... .+....  .+.++.++++.+++++  ++.+.+||+.+++.......+.     ..++++||+..|++.+.+  
T Consensus        99 ~~g~~~-~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~-----~~~~~spDG~~la~~~~~~~  172 (582)
T 3o4h_A           99 RPGEEQ-RLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG-----FGFVSDIRGDLIAGLGFFGG  172 (582)
T ss_dssp             STTCCE-ECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS-----CEEEEEEETTEEEEEEEEET
T ss_pred             CCCccc-cccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC-----ceEEECCCCCEEEEEEEcCC
Confidence            122222 332222  3445555666666655  5566799998886554443222     455666788899876621  


Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCeeEEEeccCcCceeEEEEE---
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSLS---  231 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg--~~irlwd~~~~~~~~~~~~~~~~~~v~~l~---  231 (342)
                      ..+.|++||+.+++.. .+..|...+..++|||||++|++++.+|  + |++||+.+++.. .+..+  ...+..++   
T Consensus       173 ~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~-i~~~d~~~~~~~-~~~~~--~~~~~~~~~~~  247 (582)
T 3o4h_A          173 GRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREAR-LVTVDPRDGSVE-DLELP--SKDFSSYRPTA  247 (582)
T ss_dssp             TEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEE-EEEECTTTCCEE-ECCCS--CSHHHHHCCSE
T ss_pred             CCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeE-EEEEcCCCCcEE-EccCC--CcChhhhhhcc
Confidence            1178999999887754 6778889999999999999999888887  5 579999988876 44322  22344445   


Q ss_pred             -----EecCCCcccEEEEEeCCCcEEEEec
Q 019349          232 -----FGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       232 -----fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                           |+||+.   ++++++.|+++++|++
T Consensus       248 ~~~~~~spdg~---~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          248 ITWLGYLPDGR---LAVVARREGRSAVFID  274 (582)
T ss_dssp             EEEEEECTTSC---EEEEEEETTEEEEEET
T ss_pred             ccceeEcCCCc---EEEEEEcCCcEEEEEE
Confidence                 999998   9999999999999998

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.83  E-value=1e-18  Score=151.61  Aligned_cols=233  Identities=11%  Similarity=-0.051  Sum_probs=162.3

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCC-CcEEEEEee---CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSST-GRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      +...|.+++|+|||++|++++++.+.+||+.+ ++.......   ..+..+.+.++++.+++++....   ....|.+||
T Consensus        40 ~~~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~---~~~~l~~~~  116 (297)
T 2ojh_A           40 TPELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEF---GKSAIYLLP  116 (297)
T ss_dssp             ESSCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTT---SSCEEEEEE
T ss_pred             CCcceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCC---CcceEEEEE
Confidence            46789999999999999999877889999998 765433222   23445678888888888773200   134555555


Q ss_pred             CCCCcEEEEEecCCceEEEEEcCCe--EEEEE--CCeEEEEEC--CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349           82 TTTGTALRELNFLTSILAVRLNKKR--LVIVL--REKTYIYDA--NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      ..+++ ...+.....+..+.|+++.  ++++.  ++.+++|++  .+++. ..+.  .....+..++++|++..+++++.
T Consensus       117 ~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~-~~~~--~~~~~~~~~~~s~dg~~l~~~~~  192 (297)
T 2ojh_A          117 STGGT-PRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVE-TRLT--HGEGRNDGPDYSPDGRWIYFNSS  192 (297)
T ss_dssp             TTCCC-CEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCE-EECC--CSSSCEEEEEECTTSSEEEEEEC
T ss_pred             CCCCc-eEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcc-eEcc--cCCCccccceECCCCCEEEEEec
Confidence            55555 4445555568889998875  33233  788888885  33332 3332  23345677788888888887664


Q ss_pred             CCccEEEEEEcc-CCceeEEEecccCCeeEEEECCCCCEEEEEeCCC----------cEEEEEEcCCCeeEEEeccCcCc
Q 019349          156 TTKGSVLVYNVM-ELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG----------TIIRVFLVSEATKSYSFRRGTYP  224 (342)
Q Consensus       156 ~~~g~i~iwd~~-~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg----------~~irlwd~~~~~~~~~~~~~~~~  224 (342)
                       .++.+++|++. .+..+..+..|...+.+++|+|+|++|++++.++          ..|.+||+.+++.........+.
T Consensus       193 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~  271 (297)
T 2ojh_A          193 -RTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQ  271 (297)
T ss_dssp             -TTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEEST
T ss_pred             -CCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCC
Confidence             47889999986 5566777888888999999999999999988763          23579999887653322111123


Q ss_pred             eeEEEEEEecCCCcccEEEEEeCCC
Q 019349          225 STIFSLSFGQSMQFQDILVATSSSG  249 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~s~dg  249 (342)
                      ..+.+++|+||++   +|++++.+.
T Consensus       272 ~~~~~~~~spdg~---~l~~~~~~~  293 (297)
T 2ojh_A          272 GTMNSPNWSPDGD---EFAYVRYFP  293 (297)
T ss_dssp             TTSCSCCBCTTSS---EEEEEEECC
T ss_pred             cccccceECCCCC---EEEEEEecc
Confidence            4578899999999   888887653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.82  E-value=1.5e-17  Score=149.81  Aligned_cols=235  Identities=13%  Similarity=0.130  Sum_probs=155.1

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC-----cEEEEeCCC--CcEEE--EEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKD-----GFKIFDSST--GRLCY--ERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~-----g~~v~d~~~--~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (342)
                      ...+..++|+|||++|++++.+     .+.+|+++.  +++..  ....  .....+.+  +.+.++++..      .++
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~------~~~  120 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANY------SGG  120 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEET------TTT
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEEC------CCC
Confidence            3456678999999999888764     578998765  54432  2221  22333444  6677766654      478


Q ss_pred             eEEEEECCCCcEEE----EEec-----------CCceEEEEEcCCe--EEEEE--CCeEEEEECCCCc-------ee---
Q 019349           76 RLCLFNTTTGTALR----ELNF-----------LTSILAVRLNKKR--LVIVL--REKTYIYDANTLA-------IL---  126 (342)
Q Consensus        76 ~i~iwd~~~~~~~~----~~~~-----------~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~-------~~---  126 (342)
                      .|.+|++.....+.    ...+           ...+.+++++|+.  ++++.  ++.|++|++....       +.   
T Consensus       121 ~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~  200 (361)
T 3scy_A          121 SITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKG  200 (361)
T ss_dssp             EEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEE
T ss_pred             EEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecc
Confidence            99999987543321    1121           1135779999875  44444  6799999987543       21   


Q ss_pred             --eEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce--eEEEe---cccCCeeEEEECCCCCEEEEEeC
Q 019349          127 --DTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--HCEID---AHQAPLAAIVLSSNGMYIATASE  199 (342)
Q Consensus       127 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~--~~~~~---~h~~~v~~i~~s~dg~~lat~s~  199 (342)
                        ...... .......++++|++.++++++. .++.|.+||+.+++.  +..+.   .+......++|+|||++|+++..
T Consensus       201 ~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~-~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          201 TPEAFKVA-PGSGPRHLIFNSDGKFAYLINE-IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             EEEEEECC-TTCCEEEEEECTTSSEEEEEET-TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             cccceecC-CCCCCeEEEEcCCCCEEEEEcC-CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence              122222 2234566788888888777664 579999999987653  23332   34455789999999999977766


Q ss_pred             C--CcEEEEEEcC--CCe--eEEEeccCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCC
Q 019349          200 Q--GTIIRVFLVS--EAT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGF  258 (342)
Q Consensus       200 d--g~~irlwd~~--~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~  258 (342)
                      +  ++ |++|++.  +++  .+..+..   ...+.+++|+||++   +|++++ .++.|.+|+++.
T Consensus       279 ~~~~~-i~v~~~~~~~g~~~~~~~~~~---g~~~~~~~~spdg~---~l~~~~~~~~~v~v~~~d~  337 (361)
T 3scy_A          279 LKADG-VAIFKVDETNGTLTKVGYQLT---GIHPRNFIITPNGK---YLLVACRDTNVIQIFERDQ  337 (361)
T ss_dssp             SSSCE-EEEEEECTTTCCEEEEEEEEC---SSCCCEEEECTTSC---EEEEEETTTTEEEEEEECT
T ss_pred             CCCCE-EEEEEEcCCCCcEEEeeEecC---CCCCceEEECCCCC---EEEEEECCCCCEEEEEEEC
Confidence            5  55 6899995  454  3333432   23467899999999   888887 678999987653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.82  E-value=5.4e-18  Score=147.01  Aligned_cols=213  Identities=9%  Similarity=-0.026  Sum_probs=152.0

Q ss_pred             EEEEeCCCCcEEE-EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC-CcEEEEEecC--CceEEEEEcCC
Q 019349           30 FKIFDSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT-GTALRELNFL--TSILAVRLNKK  105 (342)
Q Consensus        30 ~~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~-~~~~~~~~~~--~~v~~i~~~~~  105 (342)
                      +++||+.+++... ..+...+..+.+.++++.+++.+        ++.|.+||+.+ ++........  ..+.+++|+++
T Consensus        24 i~~~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~--------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spd   95 (297)
T 2ojh_A           24 IEIFNIRTRKMRVVWQTPELFEAPNWSPDGKYLLLNS--------EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPD   95 (297)
T ss_dssp             EEEEETTTTEEEEEEEESSCCEEEEECTTSSEEEEEE--------TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTT
T ss_pred             EEEEeCCCCceeeeccCCcceEeeEECCCCCEEEEEc--------CCeEEEEeCCCCCCceEeccccccccccceEECCC
Confidence            7999999886653 33456788888988888887764        57999999998 8766555433  46788999887


Q ss_pred             e--EEEEE---C--CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC-CceeEEEec
Q 019349          106 R--LVIVL---R--EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME-LHSHCEIDA  177 (342)
Q Consensus       106 ~--~~~~~---d--~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~-~~~~~~~~~  177 (342)
                      .  ++++.   +  ..|..+++.+++ ...+....   .+..+.++|++..+++.+. .++.++||++.. ......+..
T Consensus        96 g~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~---~~~~~~~spdg~~l~~~~~-~~~~~~l~~~~~~~~~~~~~~~  170 (297)
T 2ojh_A           96 GALYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL---PSYWHGWSPDGKSFTYCGI-RDQVFDIYSMDIDSGVETRLTH  170 (297)
T ss_dssp             SSEEEEEECTTTSSCEEEEEETTCCC-CEECCSSS---SEEEEEECTTSSEEEEEEE-ETTEEEEEEEETTTCCEEECCC
T ss_pred             CCEEEEEEeCCCCcceEEEEECCCCc-eEEeecCC---CccceEECCCCCEEEEEEC-CCCceEEEEEECCCCcceEccc
Confidence            5  33344   1  255555655554 33332222   2566778888888875443 578899998642 234456677


Q ss_pred             ccCCeeEEEECCCCCEEEEEeC-CCcEEEEEEcC-CCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC-------
Q 019349          178 HQAPLAAIVLSSNGMYIATASE-QGTIIRVFLVS-EATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-------  248 (342)
Q Consensus       178 h~~~v~~i~~s~dg~~lat~s~-dg~~irlwd~~-~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d-------  248 (342)
                      |...+.+++|+|+|++|+.++. ++. +++|++. .+..+..+..  +...+.+++|+|+++   +|++++.+       
T Consensus       171 ~~~~~~~~~~s~dg~~l~~~~~~~~~-~~i~~~~~~~~~~~~~~~--~~~~~~~~~~s~dg~---~l~~~~~~~~~~~~~  244 (297)
T 2ojh_A          171 GEGRNDGPDYSPDGRWIYFNSSRTGQ-MQIWRVRVDGSSVERITD--SAYGDWFPHPSPSGD---KVVFVSYDADVFDHP  244 (297)
T ss_dssp             SSSCEEEEEECTTSSEEEEEECTTSS-CEEEEEETTSSCEEECCC--CSEEEEEEEECTTSS---EEEEEEEETTCCSCC
T ss_pred             CCCccccceECCCCCEEEEEecCCCC-ccEEEECCCCCCcEEEec--CCcccCCeEECCCCC---EEEEEEcCCCCCccc
Confidence            8889999999999998887764 776 5899986 4555566543  245688999999999   89888876       


Q ss_pred             ----CcEEEEecCCCCC
Q 019349          249 ----GSLHVFSPGFAIN  261 (342)
Q Consensus       249 ----g~i~vwd~~~~~~  261 (342)
                          +.|++||++..+.
T Consensus       245 ~~~~~~l~~~d~~~~~~  261 (297)
T 2ojh_A          245 RDLDVRVQLMDMDGGNV  261 (297)
T ss_dssp             SSEEEEEEEEETTSCSC
T ss_pred             ccCceEEEEEecCCCCc
Confidence                5699999987543

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.80  E-value=1.3e-17  Score=170.54  Aligned_cols=233  Identities=12%  Similarity=0.152  Sum_probs=168.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCC--CCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSS--TGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .+...+.+++|+++ ..++++..++ .+||.++  .+....-.....+....+.++++.+++..        ++.|.+||
T Consensus       201 ~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~~~~~SpDG~~la~~~--------~~~i~~~d  271 (1045)
T 1k32_A          201 DMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFTDYYPRHLNTDGRRILFSK--------GGSIYIFN  271 (1045)
T ss_dssp             CCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCCSSCEEEEEESSSCEEEEE--------TTEEEEEC
T ss_pred             CCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCCCcceeeEcCCCCEEEEEe--------CCEEEEec
Confidence            45678899999998 5556666665 5888754  33222111122344457777888777763        57999999


Q ss_pred             CCCCcEEEEEecC------------CceEEEEEc-CCe--EEEEECCeEEEEECCCCceeeEEeCCCCCc-eEEEEeeCC
Q 019349           82 TTTGTALRELNFL------------TSILAVRLN-KKR--LVIVLREKTYIYDANTLAILDTIDTVPNLK-GLCAFSPSL  145 (342)
Q Consensus        82 ~~~~~~~~~~~~~------------~~v~~i~~~-~~~--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~  145 (342)
                      +...+ +..+...            ..+.++.|+ |+.  ++++.++.+++|++.+++... +.  .+.. .+..++++ 
T Consensus       272 ~~~~~-l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~~~~i~~~~~~~~~~~~-~~--~~~~~~~~~~~~s-  346 (1045)
T 1k32_A          272 PDTEK-IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLK-VP--EPLRIRYVRRGGD-  346 (1045)
T ss_dssp             TTTCC-EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEETTEEEEECTTSSBEEE-CS--CCSCEEEEEECSS-
T ss_pred             CCceE-eeeeccCcccccccccccccccceeeecCCCCCEEEEEEcCEEEEEcCCCCceEE-cc--CCCcceEEeeeEc-
Confidence            95443 3344321            258899999 875  555558899999998776442 22  2223 56778888 


Q ss_pred             CccEEEEeCCCCccEEE-EEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCc
Q 019349          146 NACFLAVPASTTKGSVL-VYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYP  224 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~-iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~  224 (342)
                      ++..+++++  .++.+. +||+.+++.. .+..|...+.+++|||||++||+++.+++ +++||+.+++....+..  +.
T Consensus       347 dg~~l~~~s--~~~~l~~~~d~~~~~~~-~l~~~~~~~~~~~~SpDG~~la~~~~~~~-v~~~d~~tg~~~~~~~~--~~  420 (1045)
T 1k32_A          347 TKVAFIHGT--REGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFE-IMTVDLETGKPTVIERS--RE  420 (1045)
T ss_dssp             SEEEEEEEE--TTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEEC--SS
T ss_pred             CCCeEEEEE--CCCceEEEEECCCCCce-EecCCccceeeeEECCCCCEEEEECCCCe-EEEEECCCCceEEeccC--CC
Confidence            888898887  367888 9999877654 34478889999999999999999999987 58999999987665532  34


Q ss_pred             eeEEEEEEecCCCcccEEEEEeCCC----------cEEEEecCCCC
Q 019349          225 STIFSLSFGQSMQFQDILVATSSSG----------SLHVFSPGFAI  260 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~s~dg----------~i~vwd~~~~~  260 (342)
                      ..+.+++||||++   +|++++.++          +|++||+++++
T Consensus       421 ~~v~~~~~SpDG~---~la~~~~~~~~~~~~~~~~~i~l~d~~~g~  463 (1045)
T 1k32_A          421 AMITDFTISDNSR---FIAYGFPLKHGETDGYVMQAIHVYDMEGRK  463 (1045)
T ss_dssp             SCCCCEEECTTSC---EEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred             CCccceEECCCCC---eEEEEecCccccccCCCCCeEEEEECCCCc
Confidence            4578899999999   898887654          89999998654

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.80  E-value=3.3e-16  Score=140.10  Aligned_cols=271  Identities=15%  Similarity=0.072  Sum_probs=160.8

Q ss_pred             CcEEEEeC--CCCcEEE---EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE--EEEE-ecCCceEE
Q 019349           28 DGFKIFDS--STGRLCY---ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA--LREL-NFLTSILA   99 (342)
Q Consensus        28 ~g~~v~d~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~--~~~~-~~~~~v~~   99 (342)
                      +++.+|++  .++++..   ..+......+.+.++++ +++++..    ..++.|.+||+.+++.  +..+ .....+..
T Consensus        16 ~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~----~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~   90 (347)
T 3hfq_A           16 QGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKE----DDEGGIAAWQIDGQTAHKLNTVVAPGTPPAY   90 (347)
T ss_dssp             CEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEE----TTEEEEEEEEEETTEEEEEEEEEEESCCCSE
T ss_pred             CCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEec----CCCceEEEEEecCCcEEEeeeeecCCCCCEE
Confidence            45766654  5565433   12223444566667666 5444420    0268999999977653  3332 23457788


Q ss_pred             EEEcCCe--EEEEE--CCeEEEEECCC-C--ceeeEEeCCCC-------CceEEEEeeCCCccEEEEeCCCCccEEEEEE
Q 019349          100 VRLNKKR--LVIVL--REKTYIYDANT-L--AILDTIDTVPN-------LKGLCAFSPSLNACFLAVPASTTKGSVLVYN  165 (342)
Q Consensus       100 i~~~~~~--~~~~~--d~~i~i~d~~~-~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd  165 (342)
                      ++++++.  ++++.  ++.+.+|++.. +  +.+..+.....       ...+.+++++|++.++ +++. .++.|.+||
T Consensus        91 ~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~-v~~~-~~~~v~~~~  168 (347)
T 3hfq_A           91 VAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLA-VIDL-GSDKVYVYN  168 (347)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEE-EEET-TTTEEEEEE
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEE-EEeC-CCCEEEEEE
Confidence            9998874  55555  57999999963 3  33333332211       1135567777888844 4443 578999999


Q ss_pred             cc-CCcee--EEEecc-cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC--Cee--EEEeccCcC----ceeEEEEEEe
Q 019349          166 VM-ELHSH--CEIDAH-QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE--ATK--SYSFRRGTY----PSTIFSLSFG  233 (342)
Q Consensus       166 ~~-~~~~~--~~~~~h-~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~--~~~--~~~~~~~~~----~~~v~~l~fs  233 (342)
                      +. +++..  ..+..+ ...+..++|+|||++|++++..+..+++|++..  ++.  +..+.....    ...+..++|+
T Consensus       169 ~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s  248 (347)
T 3hfq_A          169 VSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS  248 (347)
T ss_dssp             ECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC
T ss_pred             ECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC
Confidence            98 45432  222332 336788999999997777654433468999874  543  222221111    1348889999


Q ss_pred             cCCCcccEE-EEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeC-
Q 019349          234 QSMQFQDIL-VATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN-  311 (342)
Q Consensus       234 ~d~~~~~~l-~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-  311 (342)
                      ||++   +| ++...+++|.+|+++......       .+..+....    ..|       ..+.+.+++++|++++.+ 
T Consensus       249 pdG~---~l~v~~~~~~~v~v~~~~~~g~~~-------~~~~~~~~~----~~~-------~~~~~spdg~~l~v~~~~~  307 (347)
T 3hfq_A          249 HDGH---FLYVSNRGYNTLAVFAVTADGHLT-------LIQQISTEG----DFP-------RDFDLDPTEAFVVVVNQNT  307 (347)
T ss_dssp             TTSC---EEEEEEETTTEEEEEEECGGGCEE-------EEEEEECSS----SCC-------CEEEECTTSSEEEEEETTT
T ss_pred             CCCC---EEEEEeCCCCEEEEEEECCCCcEE-------EeEEEecCC----CCc-------CeEEECCCCCEEEEEEcCC
Confidence            9998   77 455668999999987421111       010000000    000       122334555788888875 


Q ss_pred             CcEEEEEEecCCCCe
Q 019349          312 GYFVEYIFSINNCCE  326 (342)
Q Consensus       312 g~v~~~~~~~~~~~~  326 (342)
                      +.+.+|.++.+.+..
T Consensus       308 ~~v~v~~~d~~tg~l  322 (347)
T 3hfq_A          308 DNATLYARDLTSGKL  322 (347)
T ss_dssp             TEEEEEEECTTTCCE
T ss_pred             CcEEEEEEeCCCCeE
Confidence            899999998776653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.79  E-value=1.2e-17  Score=148.82  Aligned_cols=215  Identities=8%  Similarity=-0.007  Sum_probs=149.1

Q ss_pred             CCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCe--EEEEE--CCeEEEEECCCCceeeEEeCCCC----CceEEEEe
Q 019349           73 SPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPN----LKGLCAFS  142 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~  142 (342)
                      .+++|.+||..+++.+..+..+.  .+..++++++.  ++++.  ++.|++||+.+++.+..+.....    ...+..++
T Consensus        19 ~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~   98 (349)
T 1jmx_B           19 YPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFA   98 (349)
T ss_dssp             TTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEE
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceE
Confidence            38999999999999988888766  68889998875  44554  67999999999988877765432    11234556


Q ss_pred             eCCCccEEEEeCCCC-----------ccEEEEEEccCCce---eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEE
Q 019349          143 PSLNACFLAVPASTT-----------KGSVLVYNVMELHS---HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFL  208 (342)
Q Consensus       143 ~~~~~~~l~~~~~~~-----------~g~i~iwd~~~~~~---~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd  208 (342)
                      ++|++.++++++. .           ++.|.+||+.+++.   +..+.. ...+.+++|+|||+ |+.++.  . |++||
T Consensus        99 ~spdg~~l~~~~~-~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~-i~~~d  172 (349)
T 1jmx_B           99 ISPDGKEVYATVN-PTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGS-LYVAGP--D-IYKMD  172 (349)
T ss_dssp             ECTTSSEEEEEEE-EEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSC-EEEESS--S-EEEEC
T ss_pred             ECCCCCEEEEEcc-cccccccccccCCCeEEEEECCCccccceeeeccC-CCcccceeECCCCc-EEEccC--c-EEEEe
Confidence            6788888887762 1           38999999988543   334443 34689999999999 555543  3 57999


Q ss_pred             cCCCeeEEEeccCcC-----------------------------------------------------------------
Q 019349          209 VSEATKSYSFRRGTY-----------------------------------------------------------------  223 (342)
Q Consensus       209 ~~~~~~~~~~~~~~~-----------------------------------------------------------------  223 (342)
                      +.+++.+..+..+..                                                                 
T Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  252 (349)
T 1jmx_B          173 VKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD  252 (349)
T ss_dssp             TTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE
T ss_pred             CCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEeccccc
Confidence            999987776643310                                                                 


Q ss_pred             -ceeEEEEEEec-CCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCcc
Q 019349          224 -PSTIFSLSFGQ-SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVK  301 (342)
Q Consensus       224 -~~~v~~l~fs~-d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (342)
                       ...+.+++|+| |++   +|+++  ++.|++||+++.+..+...      ..  .......|+              ++
T Consensus       253 ~~~~~~~~~~sp~dg~---~l~~~--~~~v~~~d~~~~~~~~~~~------~~--~~~~~~~~s--------------~d  305 (349)
T 1jmx_B          253 LTELYFTGLRSPKDPN---QIYGV--LNRLAKYDLKQRKLIKAAN------LD--HTYYCVAFD--------------KK  305 (349)
T ss_dssp             CSSCEEEEEECSSCTT---EEEEE--ESEEEEEETTTTEEEEEEE------CS--SCCCEEEEC--------------SS
T ss_pred             CCCcceeeEecCCCCC---EEEEE--cCeEEEEECccCeEEEEEc------CC--CCccceEEC--------------CC
Confidence             00245678889 998   88877  8899999998765322100      00  001112333              34


Q ss_pred             ccEEEEEEeCCcEEEEEEe
Q 019349          302 RASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       302 ~~~l~~~~~dg~v~~~~~~  320 (342)
                      +++|++++.++.|++|++.
T Consensus       306 g~~l~~~~~~~~v~v~d~~  324 (349)
T 1jmx_B          306 GDKLYLGGTFNDLAVFNPD  324 (349)
T ss_dssp             SSCEEEESBSSEEEEEETT
T ss_pred             CCEEEEecCCCeEEEEecc
Confidence            4788888889999999754

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.79  E-value=5e-17  Score=166.15  Aligned_cols=229  Identities=14%  Similarity=0.119  Sum_probs=174.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEee-------------CCEEEEEEc-CCCCeEEEEcCCCCCCCCC
Q 019349            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV-------------GAFSIVEML-YSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~-------------~~~~~~~~~-~~~~~~~~~~~g~~~~~~d   74 (342)
                      .+...+|+|||++|+.+.+..+.+||+...++. ....             ..+..+.+. +++..+++.+        +
T Consensus       246 ~~~~~~~SpDG~~la~~~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--------~  316 (1045)
T 1k32_A          246 DYYPRHLNTDGRRILFSKGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--------R  316 (1045)
T ss_dssp             SSCEEEEEESSSCEEEEETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--------T
T ss_pred             CcceeeEcCCCCEEEEEeCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE--------c
Confidence            456789999999999888777899998655443 3222             135567787 8888887775        4


Q ss_pred             CeEEEEECCCCcEEEEEecCC-ceEEEEEcCCeE--EEEE-CCeEE-EEECCCCceeeEEeCCCCCceEEEEeeCCCccE
Q 019349           75 RRLCLFNTTTGTALRELNFLT-SILAVRLNKKRL--VIVL-REKTY-IYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~-~v~~i~~~~~~~--~~~~-d~~i~-i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
                      +.|.+|+..+++......+.. .+..+.|+ +..  +.+. ++.+. +|++.+++.. .+.  .+...+..++++|++..
T Consensus       317 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~--~~~~~~~~~~~SpDG~~  392 (1045)
T 1k32_A          317 GQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFE--ENLGNVFAMGVDRNGKF  392 (1045)
T ss_dssp             TEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECC--CCCCSEEEEEECTTSSE
T ss_pred             CEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-Eec--CCccceeeeEECCCCCE
Confidence            689999998887654333445 78889998 754  3334 45788 8898876543 332  23345677888899999


Q ss_pred             EEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC---------cEEEEEEcCCCeeEEEecc
Q 019349          150 LAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG---------TIIRVFLVSEATKSYSFRR  220 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg---------~~irlwd~~~~~~~~~~~~  220 (342)
                      |++++  .++.|++||+.+++....+..|...+.+++|||||++||+++.++         ..|++||+.+++ +..+..
T Consensus       393 la~~~--~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~  469 (1045)
T 1k32_A          393 AVVAN--DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATT  469 (1045)
T ss_dssp             EEEEE--TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSC
T ss_pred             EEEEC--CCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeC
Confidence            99887  578999999999988877778999999999999999999988754         246899999887 455543


Q ss_pred             CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          221 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      +  ...+.+++|+||++   +|+.++.++...+|+...
T Consensus       470 ~--~~~~~~~~~spdG~---~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          470 E--NSHDYAPAFDADSK---NLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             S--SSBEEEEEECTTSC---EEEEEESCCCCCEECSSS
T ss_pred             C--CcccCCceEcCCCC---EEEEEecccCCcCcchhc
Confidence            2  34578899999999   999999999999998653

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=3e-17  Score=148.33  Aligned_cols=248  Identities=12%  Similarity=0.074  Sum_probs=157.7

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEeCC-CCcEEEEEe-e--CCEEEEEEcCCCCeE-EEEcC-CCCCCC------CCC
Q 019349            8 YPVFFVSFNQDNSGFALSTKDGFKIFDSS-TGRLCYERA-V--GAFSIVEMLYSSSLL-AIVGA-GEQPSL------SPR   75 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g~~v~d~~-~~~~~~~~~-~--~~~~~~~~~~~~~~~-~~~~~-g~~~~~------~d~   75 (342)
                      ..+..++|+|||++|++++.+.+.+|+++ ++++..... .  +....+.+.++++.+ ++++. +.-..+      .++
T Consensus        40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g  119 (365)
T 1jof_A           40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAG  119 (365)
T ss_dssp             CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCC
T ss_pred             CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCc
Confidence            46789999999999988877788999987 776543211 1  211123344455532 22321 000000      268


Q ss_pred             eEEEEECC-CCcEEEEEe-----cCCceEEEEEcCCe--EEEEE--CCeEEEEECC-CCcee--eEEeCCCCCceEEEEe
Q 019349           76 RLCLFNTT-TGTALRELN-----FLTSILAVRLNKKR--LVIVL--REKTYIYDAN-TLAIL--DTIDTVPNLKGLCAFS  142 (342)
Q Consensus        76 ~i~iwd~~-~~~~~~~~~-----~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~-~~~~~--~~~~~~~~~~~~~~~~  142 (342)
                      ++.+|++. +++....+.     ....+.++.+++++  ++++.  ++.|++|++. +++..  ..+....+......++
T Consensus       120 ~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~  199 (365)
T 1jof_A          120 YGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA  199 (365)
T ss_dssp             EEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred             eEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence            89999987 466544433     23578999999885  34443  5699999998 67543  3343222123466677


Q ss_pred             eCCCccEEEEeCCCCccEEEEEEcc--CCcee---EEEe-------cccC------CeeEEE-ECCCCCEEEEEeCCCc-
Q 019349          143 PSLNACFLAVPASTTKGSVLVYNVM--ELHSH---CEID-------AHQA------PLAAIV-LSSNGMYIATASEQGT-  202 (342)
Q Consensus       143 ~~~~~~~l~~~~~~~~g~i~iwd~~--~~~~~---~~~~-------~h~~------~v~~i~-~s~dg~~lat~s~dg~-  202 (342)
                      ++|++.++++++. .++.|.+|++.  +++..   ..+.       +|..      .+..++ |+|||++|++++.+.. 
T Consensus       200 ~spdg~~l~v~~~-~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~  278 (365)
T 1jof_A          200 MHPTGNYLYALME-AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKF  278 (365)
T ss_dssp             ECTTSSEEEEEET-TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESST
T ss_pred             ECCCCCEEEEEEC-CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCC
Confidence            8888888877664 47899999875  45432   1222       1222      488999 9999999887765432 


Q ss_pred             ----EEEEEEcC-CCeeEEEec-cCcCceeEEEEEEec---CCCcccEEEEEeCC-CcEEEEecCCC
Q 019349          203 ----IIRVFLVS-EATKSYSFR-RGTYPSTIFSLSFGQ---SMQFQDILVATSSS-GSLHVFSPGFA  259 (342)
Q Consensus       203 ----~irlwd~~-~~~~~~~~~-~~~~~~~v~~l~fs~---d~~~~~~l~~~s~d-g~i~vwd~~~~  259 (342)
                          .|++|++. +|+...... .......+..++|+|   |++   +|++++.+ ++|+||+++..
T Consensus       279 ~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg~---~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          279 ELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE---WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             TSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT---EEEEECSSSCEEEEEEEETT
T ss_pred             CCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCCC---EEEEEEcCCCeEEEEEEchh
Confidence                36899996 666433110 111122356789999   898   89988865 89999998654

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.79  E-value=4.6e-16  Score=139.98  Aligned_cols=285  Identities=13%  Similarity=0.080  Sum_probs=171.8

Q ss_pred             EcCCCCEEEEEc-----CCcEEEEeC--CCCcEEEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC-
Q 019349           15 FNQDNSGFALST-----KDGFKIFDS--STGRLCYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT-   84 (342)
Q Consensus        15 fs~d~~~la~g~-----~~g~~v~d~--~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~-   84 (342)
                      ..++..++.+|+     +.++.+|.+  .++++...  .+......+.+.++++.+++++....   .++.|.+|++.. 
T Consensus         9 ~~~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~---~~~~v~~~~~~~~   85 (361)
T 3scy_A            9 TTDSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSK---DQAAVSAFAFDKE   85 (361)
T ss_dssp             GGGGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSS---TTCEEEEEEEETT
T ss_pred             hCCCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCC---CCCcEEEEEEeCC
Confidence            445555666763     345788755  55654322  23334445677778887777765100   147999998755 


Q ss_pred             -CcE--EEEEe-cCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceee----EEeCCC-C-------CceEEEEeeCCC
Q 019349           85 -GTA--LRELN-FLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILD----TIDTVP-N-------LKGLCAFSPSLN  146 (342)
Q Consensus        85 -~~~--~~~~~-~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~----~~~~~~-~-------~~~~~~~~~~~~  146 (342)
                       ++.  +.... .......+++..+.++++.  ++.+.+|++.....+.    .+.... .       .....+++++|+
T Consensus        86 ~g~~~~~~~~~~~~~~p~~~~~dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spd  165 (361)
T 3scy_A           86 KGTLHLLNTQKTMGADPCYLTTNGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPD  165 (361)
T ss_dssp             TTEEEEEEEEECSSSCEEEEEECSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTT
T ss_pred             CCcEEEeeEeccCCCCcEEEEECCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCC
Confidence             433  33333 2346777778666666666  6799999997543221    111110 0       112355777888


Q ss_pred             ccEEEEeCCCCccEEEEEEccCCce------e------EE-EecccCCeeEEEECCCCCEEEEEeC-CCcEEEEEEcCCC
Q 019349          147 ACFLAVPASTTKGSVLVYNVMELHS------H------CE-IDAHQAPLAAIVLSSNGMYIATASE-QGTIIRVFLVSEA  212 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~~~------~------~~-~~~h~~~v~~i~~s~dg~~lat~s~-dg~~irlwd~~~~  212 (342)
                      +.++++++. .++.|.+|++.....      +      .. ...+...+..++|+|||++|++++. +++ |++||+.++
T Consensus       166 g~~l~~~~~-~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~-v~v~~~~~g  243 (361)
T 3scy_A          166 GKYLLADDL-GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGT-VIAFRYADG  243 (361)
T ss_dssp             SSEEEEEET-TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCE-EEEEEEETT
T ss_pred             CCEEEEEeC-CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCe-EEEEEecCC
Confidence            887776664 578999999875431      1      11 2234556789999999999888874 665 689999877


Q ss_pred             ee--EEEeccCc-CceeEEEEEEecCCCcccEEEEEeCC--CcEEEEecCCCCCCCCCCCcccccccccccccccccccc
Q 019349          213 TK--SYSFRRGT-YPSTIFSLSFGQSMQFQDILVATSSS--GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPA  287 (342)
Q Consensus       213 ~~--~~~~~~~~-~~~~v~~l~fs~d~~~~~~l~~~s~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (342)
                      +.  +..+.... .......++|+||++   +|+++..+  ++|.+|+++......      ..+..+...     ..| 
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~i~~spdg~---~l~v~~~~~~~~i~v~~~~~~~g~~------~~~~~~~~g-----~~~-  308 (361)
T 3scy_A          244 MLDEIQTVAADTVNAQGSGDIHLSPDGK---YLYASNRLKADGVAIFKVDETNGTL------TKVGYQLTG-----IHP-  308 (361)
T ss_dssp             EEEEEEEEESCSSCCCCEEEEEECTTSS---EEEEEECSSSCEEEEEEECTTTCCE------EEEEEEECS-----SCC-
T ss_pred             ceEEeEEEecCCCCCCCcccEEECCCCC---EEEEECCCCCCEEEEEEEcCCCCcE------EEeeEecCC-----CCC-
Confidence            54  23232111 112367899999999   88776654  899999996321100      001000000     000 


Q ss_pred             ccceeeeccCCCccccEEEEEE-eCCcEEEEEEecCCCC
Q 019349          288 DHHVLRNAFPAGVKRASVSVIT-YNGYFVEYIFSINNCC  325 (342)
Q Consensus       288 ~~~~~~~~~~~~~~~~~l~~~~-~dg~v~~~~~~~~~~~  325 (342)
                            ..+.+.+++++|++++ .++.+.+|.++.+.+.
T Consensus       309 ------~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~  341 (361)
T 3scy_A          309 ------RNFIITPNGKYLLVACRDTNVIQIFERDQATGL  341 (361)
T ss_dssp             ------CEEEECTTSCEEEEEETTTTEEEEEEECTTTCC
T ss_pred             ------ceEEECCCCCEEEEEECCCCCEEEEEEECCCCc
Confidence                  0123344557888888 5799999999976654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.78  E-value=8e-18  Score=155.72  Aligned_cols=170  Identities=12%  Similarity=0.145  Sum_probs=119.4

Q ss_pred             CeEEEEECCCCcEEEEEecCCceEEEEEcC--CeEEEEECCeEEEEECCCCc----------eeeEEe---CCCCCceEE
Q 019349           75 RRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVLREKTYIYDANTLA----------ILDTID---TVPNLKGLC  139 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~d~~i~i~d~~~~~----------~~~~~~---~~~~~~~~~  139 (342)
                      +++++|+....     . ....+..+++++  ..++++..+.+++|+.....          .+....   .......+.
T Consensus        23 ~~vri~~~~~~-----~-~~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~   96 (434)
T 2oit_A           23 KKVRIFDSPEE-----L-PKERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIH   96 (434)
T ss_dssp             CEEECSCCCSS-----C-CCSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEE
T ss_pred             eeEEecCCccc-----c-CCCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCccc
Confidence            46777764311     1 112355556654  34555555569998763210          011000   001223578


Q ss_pred             EEeeCCCccEEEE---eCCCCccEEEEEEccCC--------ce---eEEEecccCCeeEEEECCC-CCEEEEEeCCCcEE
Q 019349          140 AFSPSLNACFLAV---PASTTKGSVLVYNVMEL--------HS---HCEIDAHQAPLAAIVLSSN-GMYIATASEQGTII  204 (342)
Q Consensus       140 ~~~~~~~~~~l~~---~~~~~~g~i~iwd~~~~--------~~---~~~~~~h~~~v~~i~~s~d-g~~lat~s~dg~~i  204 (342)
                      ++++++++.+|++   +++ .|+.|+|||+.++        ++   +..+.+|..+|++++|+|+ +++||+++.||+ |
T Consensus        97 ~l~~spdg~~lav~~~sgs-~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~-v  174 (434)
T 2oit_A           97 HLALSCDNLTLSACMMSSE-YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS-I  174 (434)
T ss_dssp             EEEECTTSCEEEEEEEETT-TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC-E
T ss_pred             EEEEcCCCCEEEEEEeccC-CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe-E
Confidence            8899999999984   343 6999999998754        22   3456679999999999998 899999999998 5


Q ss_pred             EEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          205 RVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       205 rlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      ++||+++++.+.....  +...|.+++|+|+++   +|++|+.||+|++||++
T Consensus       175 ~iwD~~~~~~~~~~~~--~~~~v~~v~wspdg~---~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          175 AVLQVTETVKVCATLP--STVAVTSVCWSPKGK---QLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEEEESSSEEEEEEEC--GGGCEEEEEECTTSS---CEEEEETTSCEEEECTT
T ss_pred             EEEEcCCCcceeeccC--CCCceeEEEEcCCCC---EEEEEcCCCcEEEEccC
Confidence            8999999876554432  345699999999999   99999999999999987

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.78  E-value=3.4e-15  Score=129.85  Aligned_cols=238  Identities=14%  Similarity=0.161  Sum_probs=162.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEee--------CCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAV--------GAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      +-..+.+++++++|+++++...+ .+.+||.+ ++.......        .....+.+......+.++..+     .++.
T Consensus        28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~-----~~~~  101 (286)
T 1q7f_A           28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQ  101 (286)
T ss_dssp             CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCE
T ss_pred             ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC-----CCCE
Confidence            33568999999999987776655 47999987 544433211        233444553333444444421     2679


Q ss_pred             EEEEECCCCcEEEEEecC--CceEEEEEcCCe-EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           77 LCLFNTTTGTALRELNFL--TSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        77 i~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~-~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      |.+|| .+++.+..+...  ..+.+++++++. ++++.  ++.|++||. +++.+..+...........++.++++.+++
T Consensus       102 i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~p~~i~~~~~g~l~v  179 (286)
T 1q7f_A          102 IQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFI  179 (286)
T ss_dssp             EEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEE
T ss_pred             EEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcC-CCCEEEEeCCCCccCCcEEEEECCCCCEEE
Confidence            99999 667777766533  368899998875 44444  568999996 456666665433333466777788877666


Q ss_pred             EeCCCCccEEEEEEccCCceeEEEecc--cCCeeEEEECCCCCEEEEEeCCC-cEEEEEEcCCCeeEEEeccCcCceeEE
Q 019349          152 VPASTTKGSVLVYNVMELHSHCEIDAH--QAPLAAIVLSSNGMYIATASEQG-TIIRVFLVSEATKSYSFRRGTYPSTIF  228 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~~~~~~~~~h--~~~v~~i~~s~dg~~lat~s~dg-~~irlwd~~~~~~~~~~~~~~~~~~v~  228 (342)
                      +..  .++.|++||. .++.+..+..+  ...+..|+++++|+++++...++ + |++||. +++.+..+..+.....+.
T Consensus       180 ~~~--~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~~  254 (286)
T 1q7f_A          180 SDN--RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFN-LTIFTQ-DGQLISALESKVKHAQCF  254 (286)
T ss_dssp             EEG--GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCE-EEEECT-TSCEEEEEEESSCCSCEE
T ss_pred             EEC--CCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEE-EEEECC-CCCEEEEEcccCCCCcce
Confidence            554  4789999997 45566666543  36789999999999988887775 6 589995 577777765433233478


Q ss_pred             EEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          229 SLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      +++|+|+++   ++++ +.+++|++|++....
T Consensus       255 ~i~~~~~g~---l~vs-~~~~~v~v~~~~~~~  282 (286)
T 1q7f_A          255 DVALMDDGS---VVLA-SKDYRLYIYRYVQLA  282 (286)
T ss_dssp             EEEEETTTE---EEEE-ETTTEEEEEECSCCC
T ss_pred             eEEECCCCc---EEEE-CCCCeEEEEEccccc
Confidence            999999997   6666 679999999976543

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.76  E-value=1.8e-16  Score=143.74  Aligned_cols=234  Identities=12%  Similarity=-0.048  Sum_probs=148.3

Q ss_pred             EEEcCCCCEEEEEcC-Cc---EEEEeCCCCcEEEEEeeCC--EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349           13 VSFNQDNSGFALSTK-DG---FKIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus        13 l~fs~d~~~la~g~~-~g---~~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      .+|||||++|+.+++ ++   +.+||+.+++.......+.  .....+.++++.+++++.       ++.|.+||+.+++
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~-------~~~l~~~d~~~g~  113 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKD-------GRNLMRVDLATLE  113 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEET-------TTEEEEEETTTCC
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeC-------CCeEEEEECCCCc
Confidence            789999999988776 66   6778988886543322222  112467788888888875       6799999999998


Q ss_pred             EEEEEecCCc-eEEE--EEcCCeEEEEE-------------------------CCeEEEEECCCCceeeEEeCCCCCceE
Q 019349           87 ALRELNFLTS-ILAV--RLNKKRLVIVL-------------------------REKTYIYDANTLAILDTIDTVPNLKGL  138 (342)
Q Consensus        87 ~~~~~~~~~~-v~~i--~~~~~~~~~~~-------------------------d~~i~i~d~~~~~~~~~~~~~~~~~~~  138 (342)
                      .......+.. +...  .++++...++.                         +..|++||+.+++....... .  ..+
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~--~~~  190 (388)
T 3pe7_A          114 ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE-N--QWL  190 (388)
T ss_dssp             EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE-S--SCE
T ss_pred             ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC-C--ccc
Confidence            7766665543 3222  23565433331                         25799999998865443322 2  235


Q ss_pred             EEEeeCC-CccEEEEeCCCC----ccEEEEEEccCCceeEEEeccc--CCeeEEEECCCCCEEEEEeCC-Cc---EEEEE
Q 019349          139 CAFSPSL-NACFLAVPASTT----KGSVLVYNVMELHSHCEIDAHQ--APLAAIVLSSNGMYIATASEQ-GT---IIRVF  207 (342)
Q Consensus       139 ~~~~~~~-~~~~l~~~~~~~----~g~i~iwd~~~~~~~~~~~~h~--~~v~~i~~s~dg~~lat~s~d-g~---~irlw  207 (342)
                      ..+.++| ++..|++.....    ...|.++|+..++. ..+..+.  ..+...+|||||+.|+..+.+ +.   .|.+|
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~  269 (388)
T 3pe7_A          191 GHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSA  269 (388)
T ss_dssp             EEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEE
T ss_pred             cccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEE
Confidence            5667778 888888765311    33688888766543 3444444  357889999999988765542 22   15799


Q ss_pred             EcCCCee--EEEeccCcCc-eeEEEEEEecCCCcccEEEEE---------eCCCcEEEEecCCCC
Q 019349          208 LVSEATK--SYSFRRGTYP-STIFSLSFGQSMQFQDILVAT---------SSSGSLHVFSPGFAI  260 (342)
Q Consensus       208 d~~~~~~--~~~~~~~~~~-~~v~~l~fs~d~~~~~~l~~~---------s~dg~i~vwd~~~~~  260 (342)
                      |+.+++.  +..+....+. .....++|+||++   .|+..         ..+..|++||++++.
T Consensus       270 d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~---~l~~~~~~~~~~~~~~~~~i~~~d~~~~~  331 (388)
T 3pe7_A          270 DPETLENRQLTSMPACSHLMSNYDGSLMVGDGS---DAPVDVQDDSGYKIENDPFLYVFNMKNGT  331 (388)
T ss_dssp             CTTTCCEEEEEEECCEEEEEECTTSSEEEEEEC---CC------------CCCCEEEEEETTTTE
T ss_pred             ecCCCceEEEEcCCCceeeeecCCCCeEccCCC---cceeEeeeccccccCCCCEEEEEeccCCc
Confidence            9998874  3333210000 0011237999998   77754         456689999998754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.76  E-value=1.2e-16  Score=156.82  Aligned_cols=238  Identities=10%  Similarity=-0.016  Sum_probs=159.9

Q ss_pred             CeEEEEEcCCCCEEEEEcCC----------cEEEEeCCCCcEEEEEee-C---CEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349            9 PVFFVSFNQDNSGFALSTKD----------GFKIFDSSTGRLCYERAV-G---AFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~----------g~~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (342)
                      .|.+++|||||++|++++++          .+.+||+.+++...-... .   .+..+.+.++++.+++++.        
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~--------  133 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE--------  133 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET--------
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC--------
Confidence            48999999999999988652          367999998865211111 1   2445677888888988863        


Q ss_pred             CeEEEEECCCCcEEEEEec-CCce------------------EEEEEcCCe--EEEEE-CC-------------------
Q 019349           75 RRLCLFNTTTGTALRELNF-LTSI------------------LAVRLNKKR--LVIVL-RE-------------------  113 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~-~~~v------------------~~i~~~~~~--~~~~~-d~-------------------  113 (342)
                      ++|.+||+.+++....... ...+                  .++.|+|+.  ++.+. ++                   
T Consensus       134 ~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~  213 (723)
T 1xfd_A          134 NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTV  213 (723)
T ss_dssp             TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCC
T ss_pred             CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcc
Confidence            6899999998877654433 2222                  789999885  33333 32                   


Q ss_pred             ---------------eEEEEECCCCceeeEEeCCC----CCceEEEEeeCCCccEEEEeCC--CCccEEEEEEccCCcee
Q 019349          114 ---------------KTYIYDANTLAILDTIDTVP----NLKGLCAFSPSLNACFLAVPAS--TTKGSVLVYNVMELHSH  172 (342)
Q Consensus       114 ---------------~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~--~~~g~i~iwd~~~~~~~  172 (342)
                                     +|++||+.+++....+..+.    +...+..++++||+.++++...  ..+..|.+||+.+++..
T Consensus       214 ~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~  293 (723)
T 1xfd_A          214 KPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCT  293 (723)
T ss_dssp             EEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEE
T ss_pred             eeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcce
Confidence                           79999998887555554321    1345677888899988865531  13578999999998877


Q ss_pred             EEEec-ccCCee----EEEECCCCCEEEEE--eCCC----c-EEEEEE-cCCCee--EEEeccCcCceeEEE-EEEecCC
Q 019349          173 CEIDA-HQAPLA----AIVLSSNGMYIATA--SEQG----T-IIRVFL-VSEATK--SYSFRRGTYPSTIFS-LSFGQSM  236 (342)
Q Consensus       173 ~~~~~-h~~~v~----~i~~s~dg~~lat~--s~dg----~-~irlwd-~~~~~~--~~~~~~~~~~~~v~~-l~fs~d~  236 (342)
                      ..+.. |...+.    .++|||||+.|+..  ..++    . -|.+|| ..+++.  ...+..+  ...+.. ++|+||+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg  371 (723)
T 1xfd_A          294 KKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKG  371 (723)
T ss_dssp             EEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTT
T ss_pred             EEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCC
Confidence            66554 344443    78999999987754  4555    2 235677 344431  3444322  223444 6999999


Q ss_pred             CcccEEEEEeCC---CcEEEEecCCC
Q 019349          237 QFQDILVATSSS---GSLHVFSPGFA  259 (342)
Q Consensus       237 ~~~~~l~~~s~d---g~i~vwd~~~~  259 (342)
                      +   +|+..+.+   ++++||+++..
T Consensus       372 ~---~l~~~~~~~~~~~~~l~~~~~~  394 (723)
T 1xfd_A          372 N---KIYFLSTEDLPRRRQLYSANTV  394 (723)
T ss_dssp             T---EEEEEESSSCTTCCEEEEECSS
T ss_pred             C---EEEEEEcCCCCcceEEEEEeCC
Confidence            9   88766555   78999998754

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.76  E-value=1.3e-16  Score=153.05  Aligned_cols=195  Identities=13%  Similarity=0.058  Sum_probs=136.2

Q ss_pred             CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC-CceEEEEEcCCeEEEEEC-----CeEEEEEC
Q 019349           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSILAVRLNKKRLVIVLR-----EKTYIYDA  120 (342)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~d-----~~i~i~d~  120 (342)
                      ..+..+.+.++++.+++++.      .+++++||++.+++......++ ..+..+.|+|+.++...+     ....+|.+
T Consensus        22 ~~~~~~~~~~DG~~la~~s~------~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd~~l~~~~~~~g~~~~~l~~~   95 (582)
T 3o4h_A           22 VEKYSLQGVVDGDKLLVVGF------SEGSVNAYLYDGGETVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKV   95 (582)
T ss_dssp             SCEEEEEEEETTTEEEEEEE------ETTEEEEEEEETTEEEECCSSCCSEECEECTTCSEEEEEEECSTTSCCEEEEEE
T ss_pred             cchheeecCCCCCeEEEEEc------cCCceeEEEEcCCCcEeeecccccccccccCCCCeEEEEeccCCCCcceEEEEE
Confidence            46777888899999998875      3789999999766654444444 478999999996555442     34455444


Q ss_pred             CC--CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe
Q 019349          121 NT--LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS  198 (342)
Q Consensus       121 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s  198 (342)
                      ..  ......+.. .......++++++++..++...   ++.+.+||+.+++.......+ .  .+++|||||++||+++
T Consensus        96 ~~~~~g~~~~l~~-~~~~~~~~~s~dg~~~~~~s~~---~~~~~l~d~~~g~~~~l~~~~-~--~~~~~spDG~~la~~~  168 (582)
T 3o4h_A           96 NTSRPGEEQRLEA-VKPMRILSGVDTGEAVVFTGAT---EDRVALYALDGGGLRELARLP-G--FGFVSDIRGDLIAGLG  168 (582)
T ss_dssp             ETTSTTCCEECTT-SCSBEEEEEEECSSCEEEEEEC---SSCEEEEEEETTEEEEEEEES-S--CEEEEEEETTEEEEEE
T ss_pred             eccCCCccccccC-CCCceeeeeCCCCCeEEEEecC---CCCceEEEccCCcEEEeecCC-C--ceEEECCCCCEEEEEE
Confidence            22  211123322 2223456777777666665554   344559999988765544433 3  8899999999999888


Q ss_pred             CC----CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC--cEEEEecCCCCC
Q 019349          199 EQ----GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG--SLHVFSPGFAIN  261 (342)
Q Consensus       199 ~d----g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg--~i~vwd~~~~~~  261 (342)
                      .|    ++ |++||+.+++.. .+..  +...+.+++|||||+   +|+++..++  +|++||+++++.
T Consensus       169 ~~~~~~~~-i~~~d~~~g~~~-~l~~--~~~~~~~~~~SpDG~---~l~~~~~~~~~~i~~~d~~~~~~  230 (582)
T 3o4h_A          169 FFGGGRVS-LFTSNLSSGGLR-VFDS--GEGSFSSASISPGMK---VTAGLETAREARLVTVDPRDGSV  230 (582)
T ss_dssp             EEETTEEE-EEEEETTTCCCE-EECC--SSCEEEEEEECTTSC---EEEEEECSSCEEEEEECTTTCCE
T ss_pred             EcCCCCeE-EEEEcCCCCCce-Eeec--CCCccccceECCCCC---EEEEccCCCeeEEEEEcCCCCcE
Confidence            77    55 689999888764 4432  345689999999999   999888888  899999987654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.76  E-value=4.2e-18  Score=167.30  Aligned_cols=243  Identities=9%  Similarity=0.019  Sum_probs=159.2

Q ss_pred             EEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeC-----CEEEEEEcCCCCeEEEEcCCCC--CCCCCCeEEEEECCC
Q 019349           12 FVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVG-----AFSIVEMLYSSSLLAIVGAGEQ--PSLSPRRLCLFNTTT   84 (342)
Q Consensus        12 ~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~--~~~~d~~i~iwd~~~   84 (342)
                      +++|+|||++++++.+..+++||+.+++.......+     .+..+.+.++++.+++.+....  ..+.+++|++||+.+
T Consensus        20 ~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~   99 (719)
T 1z68_A           20 FPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSN   99 (719)
T ss_dssp             CCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTT
T ss_pred             ccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCC
Confidence            789999997776666556899999998765433321     2667788899999888764100  000157999999999


Q ss_pred             CcEEEEEecCCceEEEEEcCCe--EEEEECCeEEEEECCCCceeeEEeCCCCCceE-----------------EEEeeCC
Q 019349           85 GTALRELNFLTSILAVRLNKKR--LVIVLREKTYIYDANTLAILDTIDTVPNLKGL-----------------CAFSPSL  145 (342)
Q Consensus        85 ~~~~~~~~~~~~v~~i~~~~~~--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~  145 (342)
                      ++.+........+..++|+|++  ++.+.++.|++|++.+++..+.. .......+                 .+++++|
T Consensus       100 g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~-~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSP  178 (719)
T 1z68_A          100 GEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQIT-FNGRENKIFNGIPDWVYEEEMLATKYALWWSP  178 (719)
T ss_dssp             TEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECC-CCCBTTTEEESSCCHHHHHHTTCSSCCEEECT
T ss_pred             CccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEe-cCCCcCCeEcccccceeeeecccCcccEEECC
Confidence            8763222334568889999885  45555999999999887654321 11111111                 3678889


Q ss_pred             CccEEEEeCCCC--------------------------------ccEEEEEEccCCcee--------EEEecccCCeeEE
Q 019349          146 NACFLAVPASTT--------------------------------KGSVLVYNVMELHSH--------CEIDAHQAPLAAI  185 (342)
Q Consensus       146 ~~~~l~~~~~~~--------------------------------~g~i~iwd~~~~~~~--------~~~~~h~~~v~~i  185 (342)
                      |+..||+++.+.                                ...|++||+.+++..        ..+.+|...+..+
T Consensus       179 DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (719)
T 1z68_A          179 NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWL  258 (719)
T ss_dssp             TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEE
T ss_pred             CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEe
Confidence            999999876311                                128999999887642        1234688889999


Q ss_pred             EECCCCCEEEEEeCCC---cEEEEEE----cCCCeeEEEec---cCcCceeEE-----EEEEecCCCcccEEEE--EeCC
Q 019349          186 VLSSNGMYIATASEQG---TIIRVFL----VSEATKSYSFR---RGTYPSTIF-----SLSFGQSMQFQDILVA--TSSS  248 (342)
Q Consensus       186 ~~s~dg~~lat~s~dg---~~irlwd----~~~~~~~~~~~---~~~~~~~v~-----~l~fs~d~~~~~~l~~--~s~d  248 (342)
                      +||||++++++....+   ..|.+||    +.+++....+.   .+ +...+.     .++|+||++   .|+.  ...+
T Consensus       259 ~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~---~l~~~~~~~~  334 (719)
T 1z68_A          259 TWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEES-RTGWAGGFFVSTPVFSYDAI---SYYKIFSDKD  334 (719)
T ss_dssp             EESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEEC-SSSCSSSSSCCCCEECTTSS---CEEEEEECTT
T ss_pred             EEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEeccccc-CCceEccccCCccEECCCCC---eEEEEEEccC
Confidence            9999988777754322   1256899    77776433221   11 122344     689999998   5554  4455


Q ss_pred             Cc--EEEEecCCC
Q 019349          249 GS--LHVFSPGFA  259 (342)
Q Consensus       249 g~--i~vwd~~~~  259 (342)
                      |.  |.+||+...
T Consensus       335 g~~~l~~~~~~~~  347 (719)
T 1z68_A          335 GYKHIHYIKDTVE  347 (719)
T ss_dssp             SCEEEEEESSCST
T ss_pred             CceEEEEEECCCC
Confidence            64  566666544

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.72  E-value=1.3e-14  Score=129.09  Aligned_cols=239  Identities=8%  Similarity=0.039  Sum_probs=165.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC-------------------------cEEEEeCCCCcEEEEEee---CCEEEEEEcCCC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKD-------------------------GFKIFDSSTGRLCYERAV---GAFSIVEMLYSS   58 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~-------------------------g~~v~d~~~~~~~~~~~~---~~~~~~~~~~~~   58 (342)
                      -..+.+++|+|+|+.+++...+                         .+.+||..++++......   .....+.+..++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4579999999999988888766                         479999998887654321   234456666666


Q ss_pred             CeEEEEcCCCCCCCCCCeEEEEECCCCc-EEEEEec----------CCceEEEEEcC-C-eEEEEE---CCeEEEEECCC
Q 019349           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGT-ALRELNF----------LTSILAVRLNK-K-RLVIVL---REKTYIYDANT  122 (342)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~~-~~~~~~~----------~~~v~~i~~~~-~-~~~~~~---d~~i~i~d~~~  122 (342)
                      +.+ ++..      .++.|++||..... .+..+..          -....++++++ + .++++.   ++.|++|+ .+
T Consensus       103 ~l~-v~d~------~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~  174 (329)
T 3fvz_A          103 NYW-VTDV------ALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PS  174 (329)
T ss_dssp             CEE-EEET------TTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TT
T ss_pred             CEE-EEEC------CCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CC
Confidence            643 3333      37899999976442 4554421          12578999987 4 455554   35899999 56


Q ss_pred             CceeeEEeCCCC--------CceEEEEeeCCC-ccEEEEeCCCCccEEEEEEccCCceeEEEe--cccCCeeEEEECCCC
Q 019349          123 LAILDTIDTVPN--------LKGLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHSHCEID--AHQAPLAAIVLSSNG  191 (342)
Q Consensus       123 ~~~~~~~~~~~~--------~~~~~~~~~~~~-~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~--~h~~~v~~i~~s~dg  191 (342)
                      ++.+..+.....        ......++.+++ +.++++..  .++.|++||..+++.+..+.  .+...+.+++|+| |
T Consensus       175 g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~--~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g  251 (329)
T 3fvz_A          175 GKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADR--ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-G  251 (329)
T ss_dssp             SCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEET--TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-T
T ss_pred             CCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEEC--CCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-C
Confidence            777666632211        112456666776 55554444  57899999999888888774  4667889999999 4


Q ss_pred             CEEEEEe-------CCCcEEEEEEcCCCeeEEEeccC-cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          192 MYIATAS-------EQGTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       192 ~~lat~s-------~dg~~irlwd~~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      ..+++.+       .+.+ |++||..+++.+..+... .....+.+|+|+|++.   ++++...+++|++|+++...
T Consensus       252 ~~~~~~g~~~v~~~~~~~-v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~---lyvad~~~~~I~~~~~~~~~  324 (329)
T 3fvz_A          252 FLFAVNGKPYFGDQEPVQ-GFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGT---VYIGDAHTNTVWKFTLTEKM  324 (329)
T ss_dssp             EEEEEECCCCTTCSCCCC-EEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSE---EEEEESSSCCEEEEEEEECS
T ss_pred             EEEEeCCCEEeccCCCcE-EEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCC---EEEEECCCCEEEEEeCCccc
Confidence            4444433       3345 579999999998887421 1233478999999998   89999999999999987543

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.72  E-value=7.7e-15  Score=132.45  Aligned_cols=272  Identities=10%  Similarity=0.058  Sum_probs=164.6

Q ss_pred             EEEEcC---CcEEEEe--CCCCcEEEEEe---e--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC-CCcEEEE
Q 019349           22 FALSTK---DGFKIFD--SSTGRLCYERA---V--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT-TGTALRE   90 (342)
Q Consensus        22 la~g~~---~g~~v~d--~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~-~~~~~~~   90 (342)
                      |++|+-   +++.+|+  ..++++.....   .  .....+.+.++++.+++++.       + .|.+||+. +++....
T Consensus         5 ~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~-------~-~v~~~~~~~~g~~~~~   76 (365)
T 1jof_A            5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-------K-KWSSFAVKSPTEIVHE   76 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-------T-EEEEEEEEETTEEEEE
T ss_pred             EEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEcc-------c-eEEEEEECCCCCEEEe
Confidence            455542   3576654  56676543221   1  23445677777777766654       3 89999987 7766543


Q ss_pred             Eec--CCceEEEEEcCCeE--EEE----------------ECCeEEEEECC-CCceeeEEeC--CCCCceEEEEeeCCCc
Q 019349           91 LNF--LTSILAVRLNKKRL--VIV----------------LREKTYIYDAN-TLAILDTIDT--VPNLKGLCAFSPSLNA  147 (342)
Q Consensus        91 ~~~--~~~v~~i~~~~~~~--~~~----------------~d~~i~i~d~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~  147 (342)
                      ...  ...+..+.++++..  +++                .++.+.+|++. +++....+..  +........++++|++
T Consensus        77 ~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG  156 (365)
T 1jof_A           77 ASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTE  156 (365)
T ss_dssp             EEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTS
T ss_pred             eEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCC
Confidence            332  23355577888754  331                25689999997 4655544432  1122346677788888


Q ss_pred             cEEEEeCCCCccEEEEEEcc-CCcee--EEEe--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC--CCeeEE---E
Q 019349          148 CFLAVPASTTKGSVLVYNVM-ELHSH--CEID--AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS--EATKSY---S  217 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~-~~~~~--~~~~--~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~--~~~~~~---~  217 (342)
                      .+++++.. .++.|.+||+. +++..  ..+.  .|...+..++|+|||++|+++++.+..+++|++.  +|+...   .
T Consensus       157 ~~l~~~~~-~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~  235 (365)
T 1jof_A          157 TYLYSADL-TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHS  235 (365)
T ss_dssp             SEEEEEET-TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEE
T ss_pred             CEEEEEcC-CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccce
Confidence            88877654 46799999998 66543  3343  2466799999999999999888643346899765  565421   2


Q ss_pred             ecc---CcCc-e-------eEEEEE-EecCCCcccEEEEEeCC-C-----cEEEEecCCCCCCCCCCCcccccccccccc
Q 019349          218 FRR---GTYP-S-------TIFSLS-FGQSMQFQDILVATSSS-G-----SLHVFSPGFAINQRRGGRTSSILGSILPES  279 (342)
Q Consensus       218 ~~~---~~~~-~-------~v~~l~-fs~d~~~~~~l~~~s~d-g-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~  279 (342)
                      +..   +... .       .+..++ |+||++   +|++++.+ +     +|.+|+++......      . +....+..
T Consensus       236 ~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~---~l~v~~~~~~~~~~~~i~v~~~~~~g~~~------~-~~~~~~~~  305 (365)
T 1jof_A          236 FPLIPPGIPDRDPETGKGLYRADVCALTFSGK---YMFASSRANKFELQGYIAGFKLRDCGSIE------K-QLFLSPTP  305 (365)
T ss_dssp             EESSCTTCCCBCTTTSSBSEEEEEEEECTTSS---EEEEEEEESSTTSCCEEEEEEECTTSCEE------E-EEEEEECS
T ss_pred             EEcCCCCcCCcccccccccccccEEEECCCCC---EEEEECCCCCCCCCCeEEEEEECCCCCEE------E-eeeeeecC
Confidence            211   1001 1       478899 999999   88776543 3     89999996311111      0 00000000


Q ss_pred             ccccccccccceeeeccCCCc---cccEEEEEEeC-CcEEEEEEecC
Q 019349          280 VNEVLDPADHHVLRNAFPAGV---KRASVSVITYN-GYFVEYIFSIN  322 (342)
Q Consensus       280 ~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~d-g~v~~~~~~~~  322 (342)
                         -..+       ..+++.|   ++++|++++.+ +.|.+|+++.+
T Consensus       306 ---~~~~-------~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          306 ---TSGG-------HSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             ---SCCT-------TCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             ---CCCc-------ccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence               0000       0122233   45789888875 89999999875

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.71  E-value=3.8e-15  Score=135.08  Aligned_cols=283  Identities=11%  Similarity=-0.015  Sum_probs=165.9

Q ss_pred             eEEEEEcCCCCEEEEEcCC----cEEEEeCCCCcEEEEEeeC-CEE-EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349           10 VFFVSFNQDNSGFALSTKD----GFKIFDSSTGRLCYERAVG-AFS-IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~~~----g~~v~d~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      +.+++|+|||++|+.....    .+.+||+.+++...-.... ... ...+.++++.+++++.       ++.|.+||+.
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~-------~~~l~~~d~~  110 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKN-------ELNLMKVDLE  110 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEET-------TTEEEEEETT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEc-------CCcEEEEECC
Confidence            6678999999998766543    3677898887653322211 111 1456778888888875       5689999999


Q ss_pred             CCcEEEEEecCCc-eEE---E----------------EEcCCeEE--E------EECCeEEEEECCCCceeeEEeCCCCC
Q 019349           84 TGTALRELNFLTS-ILA---V----------------RLNKKRLV--I------VLREKTYIYDANTLAILDTIDTVPNL  135 (342)
Q Consensus        84 ~~~~~~~~~~~~~-v~~---i----------------~~~~~~~~--~------~~d~~i~i~d~~~~~~~~~~~~~~~~  135 (342)
                      +++.......+.. ...   +                .++++...  +      ..+..|++||+.+++.......   .
T Consensus       111 ~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~  187 (396)
T 3c5m_A          111 TLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---T  187 (396)
T ss_dssp             TCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---S
T ss_pred             CCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC---C
Confidence            8886655543332 111   1                12222111  1      1134899999988765544422   2


Q ss_pred             ceEEEEeeCC-CccEEEEeCCCCc----cEEEEEEccCCceeEEEecc--cCCeeEEEECCCCCEEEEEeCC-C---cEE
Q 019349          136 KGLCAFSPSL-NACFLAVPASTTK----GSVLVYNVMELHSHCEIDAH--QAPLAAIVLSSNGMYIATASEQ-G---TII  204 (342)
Q Consensus       136 ~~~~~~~~~~-~~~~l~~~~~~~~----g~i~iwd~~~~~~~~~~~~h--~~~v~~i~~s~dg~~lat~s~d-g---~~i  204 (342)
                      ..+..+.++| ++..+++......    ..|.+||+..++.. .+..+  ...+..++|+|||++|+.++.+ +   ..|
T Consensus       188 ~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l  266 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVI  266 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEE
T ss_pred             cccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCccccceEECCCCCEEEEEecCCCCccceE
Confidence            2345556667 6666666542122    46899998765433 33333  2358889999999988877654 1   125


Q ss_pred             EEEEcCCCeeEEEeccCcCceeEEEEEEec-CCCcccEEEEEe----------------CCCcEEEEecCCCCCCCCCCC
Q 019349          205 RVFLVSEATKSYSFRRGTYPSTIFSLSFGQ-SMQFQDILVATS----------------SSGSLHVFSPGFAINQRRGGR  267 (342)
Q Consensus       205 rlwd~~~~~~~~~~~~~~~~~~v~~l~fs~-d~~~~~~l~~~s----------------~dg~i~vwd~~~~~~~~~~~~  267 (342)
                      ++||+.+++...... .  +. .. ++|+| |++   +|+.++                .++.|++||++.+........
T Consensus       267 ~~~d~~~g~~~~l~~-~--~~-~~-~~~s~~dg~---~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  338 (396)
T 3c5m_A          267 YKANPETLENEEVMV-M--PP-CS-HLMSNFDGS---LMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKH  338 (396)
T ss_dssp             EEECTTTCCEEEEEE-C--CS-EE-EEEECSSSS---EEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEEC
T ss_pred             EEEECCCCCeEEeee-C--CC-CC-CCccCCCCc---eEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCC
Confidence            799998886533221 1  11 23 89999 998   887765                346899999876543210000


Q ss_pred             ccccccccccc----cccccccccccceeeeccCCCccccEEEEEEe-CCcEEEEEEecCCCCe
Q 019349          268 TSSILGSILPE----SVNEVLDPADHHVLRNAFPAGVKRASVSVITY-NGYFVEYIFSINNCCE  326 (342)
Q Consensus       268 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~v~~~~~~~~~~~~  326 (342)
                      ... .+.+...    .....|+|              +++.|+..+. +|...+|.++...+..
T Consensus       339 ~~~-~~~~~~~~~~~~~~~~~s~--------------dg~~l~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          339 STS-WDVLDGDRQITHPHPSFTP--------------NDDGVLFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             CCC-CCCBTTBSSTTCCCCEECT--------------TSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred             CCc-cccccccccCCCCCceEcc--------------CCCeEEEEecCCCCceEEEEEEccccc
Confidence            000 0000000    01113333              4467777665 6788888888766553

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.71  E-value=5.1e-16  Score=153.15  Aligned_cols=247  Identities=11%  Similarity=0.040  Sum_probs=158.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCC-----EEE--EEEcCCCCeEEEEcCCCCC--CCCCCeEEE
Q 019349            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGA-----FSI--VEMLYSSSLLAIVGAGEQP--SLSPRRLCL   79 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~g~~~--~~~d~~i~i   79 (342)
                      ...+++|+|||++|+++ ++.+++||+.+++.......+.     +..  ..+.++++.+++.+.....  .+..+.+.+
T Consensus        18 ~~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             cccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            46689999999988887 6668999999987543322211     122  5678888888877641000  001256789


Q ss_pred             EECCCCcEEEEEecCCceEEEEEcCCe--EEEEECCeEEEEECCCCceeeEEeCCCCCceE-----------------EE
Q 019349           80 FNTTTGTALRELNFLTSILAVRLNKKR--LVIVLREKTYIYDANTLAILDTIDTVPNLKGL-----------------CA  140 (342)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~-----------------~~  140 (342)
                      ||+.+++......++..+....|+|++  ++.+.++.|++|++.+++..+ +........+                 .+
T Consensus        97 ~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~ee~~~~~~~  175 (740)
T 4a5s_A           97 YDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (740)
T ss_dssp             EETTTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             EECCCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE-EcCCCCccceecCcccccccchhcCCCcc
Confidence            999998865433345678999999975  444559999999998876432 2222221111                 23


Q ss_pred             EeeCCCccEEEEeCCC----------------------------------CccEEEEEEccC---Cc--eeEEEe-----
Q 019349          141 FSPSLNACFLAVPAST----------------------------------TKGSVLVYNVME---LH--SHCEID-----  176 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~----------------------------------~~g~i~iwd~~~---~~--~~~~~~-----  176 (342)
                      +.++||+..||+...+                                  ...+|.+||+.+   ++  ....+.     
T Consensus       176 ~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~  255 (740)
T 4a5s_A          176 LWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASM  255 (740)
T ss_dssp             EEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHH
T ss_pred             eEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccC
Confidence            6778899988876310                                  122688999988   73  223343     


Q ss_pred             -cccCCeeEEEECCCCCEEEEEeCCC---cEEEEEEcCCCe----eE--EEeccCcCcee-----EEEEEEecCCCcccE
Q 019349          177 -AHQAPLAAIVLSSNGMYIATASEQG---TIIRVFLVSEAT----KS--YSFRRGTYPST-----IFSLSFGQSMQFQDI  241 (342)
Q Consensus       177 -~h~~~v~~i~~s~dg~~lat~s~dg---~~irlwd~~~~~----~~--~~~~~~~~~~~-----v~~l~fs~d~~~~~~  241 (342)
                       +|...+..++|||||+.++.....+   ..|++||+.+|+    +.  ..+....+..-     ....+|+|||+   .
T Consensus       256 ~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~---~  332 (740)
T 4a5s_A          256 LIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGN---S  332 (740)
T ss_dssp             HTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSS---E
T ss_pred             CCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCC---E
Confidence             3778899999999999777654322   236899999886    11  11100111111     23678999998   7


Q ss_pred             EE-EEeC-CC--cEEEEecCCCC
Q 019349          242 LV-ATSS-SG--SLHVFSPGFAI  260 (342)
Q Consensus       242 l~-~~s~-dg--~i~vwd~~~~~  260 (342)
                      |+ ..+. +|  .|++||++...
T Consensus       333 l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          333 FYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             EEEEEECTTSCEEEEEEETTCSS
T ss_pred             EEEEEEcCCCceEEEEEECCCCc
Confidence            76 6654 44  57788877554

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.63  E-value=7.5e-13  Score=117.70  Aligned_cols=213  Identities=9%  Similarity=0.024  Sum_probs=150.0

Q ss_pred             CcEEEEeCCCCcEEEEEe-------eCC-EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEE
Q 019349           28 DGFKIFDSSTGRLCYERA-------VGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILA   99 (342)
Q Consensus        28 ~g~~v~d~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~   99 (342)
                      .++.+||.++++......       .+. ...+.  ...+.+.++..      .+++|.+||..+++.+.++........
T Consensus        17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~--~~~~~lyv~~~------~~~~v~viD~~t~~~~~~i~~~~~p~~   88 (328)
T 3dsm_A           17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMV--IRDGIGWIVVN------NSHVIFAIDINTFKEVGRITGFTSPRY   88 (328)
T ss_dssp             BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEE--EETTEEEEEEG------GGTEEEEEETTTCCEEEEEECCSSEEE
T ss_pred             ceEEEEECCCCEEhhhhHhhhcCcccCccceEEE--EECCEEEEEEc------CCCEEEEEECcccEEEEEcCCCCCCcE
Confidence            458999999987654221       111 12222  24455555554      368999999999999998876667889


Q ss_pred             EEEcC-CeEEEEE--CCeEEEEECCCCceeeEEeCCC------CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc
Q 019349          100 VRLNK-KRLVIVL--REKTYIYDANTLAILDTIDTVP------NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (342)
Q Consensus       100 i~~~~-~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~  170 (342)
                      +++++ ..++++.  ++.|.+||..+++....+....      .+..+..   . ++..+++... .++.|.++|+.+++
T Consensus        89 i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~---~-~~~lyv~~~~-~~~~v~viD~~t~~  163 (328)
T 3dsm_A           89 IHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ---Y-GKYVYVNCWS-YQNRILKIDTETDK  163 (328)
T ss_dssp             EEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE---E-TTEEEEEECT-TCCEEEEEETTTTE
T ss_pred             EEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE---E-CCEEEEEcCC-CCCEEEEEECCCCe
Confidence            99844 4555665  6799999999999888887655      4444433   2 2333333221 26899999999998


Q ss_pred             eeEEEecccCCeeEEEECCCCCEEEEEeCC----------CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCccc
Q 019349          171 SHCEIDAHQAPLAAIVLSSNGMYIATASEQ----------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQD  240 (342)
Q Consensus       171 ~~~~~~~h~~~v~~i~~s~dg~~lat~s~d----------g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~  240 (342)
                      .+..+.... ....++++|+|++++++..+          +. +.++|..+++....+.... ......|+|+||++   
T Consensus       164 ~~~~i~~g~-~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~-v~~id~~t~~v~~~~~~~~-g~~p~~la~~~d~~---  237 (328)
T 3dsm_A          164 VVDELTIGI-QPTSLVMDKYNKMWTITDGGYEGSPYGYEAPS-LYRIDAETFTVEKQFKFKL-GDWPSEVQLNGTRD---  237 (328)
T ss_dssp             EEEEEECSS-CBCCCEECTTSEEEEEBCCBCTTCSSCBCCCE-EEEEETTTTEEEEEEECCT-TCCCEEEEECTTSC---
T ss_pred             EEEEEEcCC-CccceEEcCCCCEEEEECCCccCCccccCCce-EEEEECCCCeEEEEEecCC-CCCceeEEEecCCC---
Confidence            888776533 45789999999987777654          55 5799999998776664321 12478899999998   


Q ss_pred             EEEEEeCCCcEEEEecCCCCC
Q 019349          241 ILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       241 ~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +|.++..  +|.+||+++.+.
T Consensus       238 ~lyv~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          238 TLYWINN--DIWRMPVEADRV  256 (328)
T ss_dssp             EEEEESS--SEEEEETTCSSC
T ss_pred             EEEEEcc--EEEEEECCCCce
Confidence            7877765  899999877653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.62  E-value=9.3e-13  Score=117.08  Aligned_cols=232  Identities=9%  Similarity=0.019  Sum_probs=159.8

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CcEEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349            9 PVFFVSFNQDNSGFALSTK-DGFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~-~g~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      ....+.+.. ++..++... +.+.+||..+++++..... .....+.+..+. .+.+...      .++.|.+||..+++
T Consensus        45 ~~~~i~~~~-~~lyv~~~~~~~v~viD~~t~~~~~~i~~~~~p~~i~~~~~g-~lyv~~~------~~~~v~~iD~~t~~  116 (328)
T 3dsm_A           45 VAQSMVIRD-GIGWIVVNNSHVIFAIDINTFKEVGRITGFTSPRYIHFLSDE-KAYVTQI------WDYRIFIINPKTYE  116 (328)
T ss_dssp             CEEEEEEET-TEEEEEEGGGTEEEEEETTTCCEEEEEECCSSEEEEEEEETT-EEEEEEB------SCSEEEEEETTTTE
T ss_pred             cceEEEEEC-CEEEEEEcCCCEEEEEECcccEEEEEcCCCCCCcEEEEeCCC-eEEEEEC------CCCeEEEEECCCCe
Confidence            457788753 333344443 4579999999988665532 334444443444 4444432      27899999999999


Q ss_pred             EEEEEecCC------ceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           87 ALRELNFLT------SILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        87 ~~~~~~~~~------~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      .+..+....      ....+++....++++.   ++.|.++|+.+++.+..+.....+..   +..++++.+++++.. .
T Consensus       117 ~~~~i~~g~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~---i~~~~dG~l~v~~~~-~  192 (328)
T 3dsm_A          117 ITGYIECPDMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTS---LVMDKYNKMWTITDG-G  192 (328)
T ss_dssp             EEEEEECTTCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCC---CEECTTSEEEEEBCC-B
T ss_pred             EEEEEEcCCccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccc---eEEcCCCCEEEEECC-C
Confidence            888887655      6667777777888875   57999999999998888876555433   344667776665542 1


Q ss_pred             ---------ccEEEEEEccCCceeEEEecc-cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE
Q 019349          158 ---------KGSVLVYNVMELHSHCEIDAH-QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI  227 (342)
Q Consensus       158 ---------~g~i~iwd~~~~~~~~~~~~h-~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v  227 (342)
                               .+.|.++|..+++....+... ....+.++|+||+++|..+..  ++ .+||..+++..............
T Consensus       193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v-~~~d~~t~~~~~~~~~~~~~~~p  269 (328)
T 3dsm_A          193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN--DI-WRMPVEADRVPVRPFLEFRDTKY  269 (328)
T ss_dssp             CTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS--SE-EEEETTCSSCCSSCSBCCCSSCE
T ss_pred             ccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc--EE-EEEECCCCceeeeeeecCCCCce
Confidence                     278999999999877776543 236899999999999988765  54 69999888753211001012347


Q ss_pred             EEEEEecCCCcccEEEEE----eCCCcEEEEecC
Q 019349          228 FSLSFGQSMQFQDILVAT----SSSGSLHVFSPG  257 (342)
Q Consensus       228 ~~l~fs~d~~~~~~l~~~----s~dg~i~vwd~~  257 (342)
                      ..++++|++.  .++++.    ..+++|.+||.+
T Consensus       270 ~gi~vdp~~g--~lyva~~~~y~~~~~V~v~d~~  301 (328)
T 3dsm_A          270 YGLTVNPNNG--EVYVADAIDYQQQGIVYRYSPQ  301 (328)
T ss_dssp             EEEEECTTTC--CEEEEECTTSSSEEEEEEECTT
T ss_pred             EEEEEcCCCC--eEEEEcccccccCCEEEEECCC
Confidence            8899999544  166666    678999999987

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.61  E-value=4.1e-13  Score=119.71  Aligned_cols=228  Identities=12%  Similarity=0.102  Sum_probs=146.9

Q ss_pred             CeEEEEEcCCCCEEEEEcCC---c---EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCC-----------C
Q 019349            9 PVFFVSFNQDNSGFALSTKD---G---FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQP-----------S   71 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~---g---~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-----------~   71 (342)
                      .+.+++|||||++|+..+.+   +   +.+|++.+++...-.....+..+.+.++++.+++.+.....           .
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~  139 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKNIRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPA  139 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESEEEEEEECTTSSEEEEEEECCCC---------CCC
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCCccceeECCCCCEEEEEEccCCCcCCcEEEcccce
Confidence            46789999999999876542   2   56778888764432222226667788888888887631000           0


Q ss_pred             ---------CCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE--C------C-eEEEEECCCCceeeEEeCCC
Q 019349           72 ---------LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL--R------E-KTYIYDANTLAILDTIDTVP  133 (342)
Q Consensus        72 ---------~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~--d------~-~i~i~d~~~~~~~~~~~~~~  133 (342)
                               .....|.+||+.+++.+..+..+ .+..+.|+++++++..  +      . ...||.+.+++. ..+..+ 
T Consensus       140 ~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~-~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~l~~~-  216 (347)
T 2gop_A          140 WFDDLGFFDGEKTTFWIFDTESEEVIEEFEKP-RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWEDGKE-EKMFEK-  216 (347)
T ss_dssp             C---------CEEEEEEEETTTTEEEEEEEEE-TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEETTEE-EEEEEE-
T ss_pred             eecCcccccCccceEEEEECCCCeEEeeecCC-CcccccCCCCeEEEEEecccccccccccccEEEeCCCce-EEeccC-
Confidence                     01367999999988774444434 7888999999844333  2      1 334443334443 333322 


Q ss_pred             CCceEEEEeeCCCccEEEEeCCCC------ccEEEEEEccCCceeEEEecccCCeeE-EEECCCCCEEEEEeCCCcEEEE
Q 019349          134 NLKGLCAFSPSLNACFLAVPASTT------KGSVLVYNVMELHSHCEIDAHQAPLAA-IVLSSNGMYIATASEQGTIIRV  206 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~~~------~g~i~iwd~~~~~~~~~~~~h~~~v~~-i~~s~dg~~lat~s~dg~~irl  206 (342)
                        .....+  +|++..|++.+...      ...|.+||  +++.......|...+.. +.|+ || ++++++.++. ++|
T Consensus       217 --~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~-~~l  287 (347)
T 2gop_A          217 --VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS-VNL  287 (347)
T ss_dssp             --ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE-EEE
T ss_pred             --cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc-EEE
Confidence              223333  56777777665321      35788888  55554445567778886 9999 88 9999999987 589


Q ss_pred             EEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcE-EEEecC
Q 019349          207 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL-HVFSPG  257 (342)
Q Consensus       207 wd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i-~vwd~~  257 (342)
                      | +.+++....+ .+  ...|.+++|+|  .   ++++++.+++. .||.++
T Consensus       288 ~-~~~g~~~~~~-~~--~~~v~~~~~s~--~---~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          288 Y-IWDGEIKPIA-KG--RHWIMGFDVDE--I---VVYLKETATRLRELFTWD  330 (347)
T ss_dssp             E-EESSSEEEEE-CS--SSEEEEEEESS--S---EEEEEECSSSCCEEEEES
T ss_pred             E-EcCCceEEEe-cC--CCeEEeeeeeC--c---EEEEEcCCCChHHheEeC
Confidence            9 8766653333 22  45689999999  5   77777777765 788776

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.61  E-value=5.6e-14  Score=137.94  Aligned_cols=234  Identities=11%  Similarity=0.052  Sum_probs=155.2

Q ss_pred             CeEEEEEcCCCCEEEEEcC----------CcEEEEeCCCCcEE--EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            9 PVFFVSFNQDNSGFALSTK----------DGFKIFDSSTGRLC--YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~----------~g~~v~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      .|.+++|||||++|+.+++          ..+++||+++++.+  ... ...+..+.+.++++.++++.        +++
T Consensus        61 ~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l-~~~~~~~~~SPDG~~la~~~--------~~~  131 (719)
T 1z68_A           61 NASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNEL-PRPIQYLCWSPVGSKLAYVY--------QNN  131 (719)
T ss_dssp             TCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCC-CSSBCCEEECSSTTCEEEEE--------TTE
T ss_pred             ceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceec-CcccccceECCCCCEEEEEE--------CCe
Confidence            4789999999999988765          34799999988752  111 24456678899999998875        579


Q ss_pred             EEEEECCCCcEEEEEecC--Cce-----------------EEEEEcCCe--EEEEE-CC---------------------
Q 019349           77 LCLFNTTTGTALRELNFL--TSI-----------------LAVRLNKKR--LVIVL-RE---------------------  113 (342)
Q Consensus        77 i~iwd~~~~~~~~~~~~~--~~v-----------------~~i~~~~~~--~~~~~-d~---------------------  113 (342)
                      |++||+.+++........  ..|                 .++.|+|++  ++.+. ++                     
T Consensus       132 i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~  211 (719)
T 1z68_A          132 IYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTIN  211 (719)
T ss_dssp             EEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEE
T ss_pred             EEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCcccee
Confidence            999999888765322111  112                 479999885  33333 31                     


Q ss_pred             -------------eEEEEECCCCcee--eEEeC----CCCCceEEEEeeCCCccEEEEeC--CCCccEEEEEE----ccC
Q 019349          114 -------------KTYIYDANTLAIL--DTIDT----VPNLKGLCAFSPSLNACFLAVPA--STTKGSVLVYN----VME  168 (342)
Q Consensus       114 -------------~i~i~d~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~l~~~~--~~~~g~i~iwd----~~~  168 (342)
                                   +|++||+.+++..  ..+..    ..+...+..++++||+.++++..  ......|.+||    +.+
T Consensus       212 ~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~  291 (719)
T 1z68_A          212 IPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQT  291 (719)
T ss_dssp             EECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSS
T ss_pred             ecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCC
Confidence                         7889999887643  12211    02334566778888877666532  11235688899    777


Q ss_pred             CceeEEE----ecccCCee-----EEEECCCCCEEEE--EeCCCc-EEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349          169 LHSHCEI----DAHQAPLA-----AIVLSSNGMYIAT--ASEQGT-IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  236 (342)
Q Consensus       169 ~~~~~~~----~~h~~~v~-----~i~~s~dg~~lat--~s~dg~-~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (342)
                      ++....+    ..|...+.     .++|+|||+.|+.  +..+|. -|.+||+.+++ ...+..+  ...+..+.++ ++
T Consensus       292 g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~--~~~v~~~~~~-d~  367 (719)
T 1z68_A          292 WDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG--KWEAINIFRV-TQ  367 (719)
T ss_dssp             EECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS--SSCEEEEEEE-CS
T ss_pred             CceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC--ceEEEEEEEE-eC
Confidence            7765555    46777777     8999999996654  445553 24577877665 3444322  3347777777 77


Q ss_pred             CcccEEEEEeCC-----CcEEEEecCC
Q 019349          237 QFQDILVATSSS-----GSLHVFSPGF  258 (342)
Q Consensus       237 ~~~~~l~~~s~d-----g~i~vwd~~~  258 (342)
                      +   .|+..+.+     +++++|.++.
T Consensus       368 ~---~i~~~~~~~~~~~~~~~l~~~~~  391 (719)
T 1z68_A          368 D---SLFYSSNEFEEYPGRRNIYRISI  391 (719)
T ss_dssp             S---EEEEEESCGGGCTTCBEEEEEEC
T ss_pred             C---EEEEEEecCCCCCceEEEEEEeC
Confidence            7   66666654     8899998864

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.61  E-value=2.7e-12  Score=111.36  Aligned_cols=191  Identities=11%  Similarity=0.141  Sum_probs=131.4

Q ss_pred             EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC-------CceEEEEE-cCC-eEEEEE---CCeEE
Q 019349           49 FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-------TSILAVRL-NKK-RLVIVL---REKTY  116 (342)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~-------~~v~~i~~-~~~-~~~~~~---d~~i~  116 (342)
                      ...+.+..+.+.++ +..      .++.|.+||.. ++.+..+...       ..+.++++ .++ .++++.   ++.|+
T Consensus        32 p~~v~~~~~g~l~v-~~~------~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           32 PSGVAVNAQNDIIV-ADT------NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQ  103 (286)
T ss_dssp             EEEEEECTTCCEEE-EEG------GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEE
T ss_pred             CceEEECCCCCEEE-EEC------CCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEE
Confidence            34455555555333 322      36899999986 6666665421       36788998 344 556665   57999


Q ss_pred             EEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe--cccCCeeEEEECCCCCEE
Q 019349          117 IYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID--AHQAPLAAIVLSSNGMYI  194 (342)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~--~h~~~v~~i~~s~dg~~l  194 (342)
                      +|| .+++.+..+... .......++.++++.++++..  .++.|.+||.. ++.+..+.  .+...+..|+++++|+++
T Consensus       104 ~~d-~~g~~~~~~~~~-~~~~~~~i~~~~~g~l~v~~~--~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~  178 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGAT-ILQHPRGVTVDNKGRIIVVEC--KVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIF  178 (286)
T ss_dssp             EEC-TTSCEEEEECTT-TCSCEEEEEECTTSCEEEEET--TTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEE
T ss_pred             EEC-CCCcEEEEecCc-cCCCceEEEEeCCCCEEEEEC--CCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEE
Confidence            999 667777666432 223456677777887666654  46899999954 55555554  455678999999999988


Q ss_pred             EEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC-cEEEEecC
Q 019349          195 ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG-SLHVFSPG  257 (342)
Q Consensus       195 at~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg-~i~vwd~~  257 (342)
                      ++.+.++. |++||. +++.+..+........+..|+++|++.   ++++...++ .|++||.+
T Consensus       179 v~~~~~~~-i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~---l~v~~~~~~~~i~~~~~~  237 (286)
T 1q7f_A          179 ISDNRAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGE---ILIADNHNNFNLTIFTQD  237 (286)
T ss_dssp             EEEGGGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCC---EEEEECSSSCEEEEECTT
T ss_pred             EEECCCCE-EEEEcC-CCCEEEEEccCCccCCCcEEEECCCCC---EEEEeCCCCEEEEEECCC
Confidence            88777776 589997 566666664321123578999999998   888887776 99999954

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.61  E-value=3.3e-13  Score=121.66  Aligned_cols=228  Identities=9%  Similarity=0.074  Sum_probs=150.4

Q ss_pred             EEEEcCCCCEEEEEcC-----------CcEEEEeCCCCcEEEEEeeC--------CEEEEEEcCCCCeEEEEcCCCCCCC
Q 019349           12 FVSFNQDNSGFALSTK-----------DGFKIFDSSTGRLCYERAVG--------AFSIVEMLYSSSLLAIVGAGEQPSL   72 (342)
Q Consensus        12 ~l~fs~d~~~la~g~~-----------~g~~v~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~~   72 (342)
                      .++|+|||++|+++..           +.+.+||+.+++.+......        ....+.+.++++++.+...+     
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~-----  128 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNAS-----  128 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEES-----
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCC-----
Confidence            8999999999988752           34799999988776554321        12235677778887776531     


Q ss_pred             CCCeEEEEECCCCcEEEE-EecCCceEEEEEcCC---eEEEEE-CCeEEEEECCC-CceeeEEe------CCCCCceEEE
Q 019349           73 SPRRLCLFNTTTGTALRE-LNFLTSILAVRLNKK---RLVIVL-REKTYIYDANT-LAILDTID------TVPNLKGLCA  140 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~-~~~~~~v~~i~~~~~---~~~~~~-d~~i~i~d~~~-~~~~~~~~------~~~~~~~~~~  140 (342)
                      .+++|.+||+.+++.+.. +..... ..+.+.++   .++... |+++.+|++.. ++......      ....+.   .
T Consensus       129 ~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~---~  204 (361)
T 2oiz_A          129 PATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI---F  204 (361)
T ss_dssp             SSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB---C
T ss_pred             CCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCce---E
Confidence            268999999999988877 655432 22344443   233333 88999999865 55442221      111111   1


Q ss_pred             EeeCCCccEEEEeCCCCccEEEEEEccCCce--eEEEec------c----cCCeeEEEECCCCCEEEEEeC---------
Q 019349          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHS--HCEIDA------H----QAPLAAIVLSSNGMYIATASE---------  199 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~--~~~~~~------h----~~~v~~i~~s~dg~~lat~s~---------  199 (342)
                      +...+++..+++..  .++.|.++|+.....  ...+..      +    ......++|+||++.+..+..         
T Consensus       205 ~~~~~~g~~~~~~~--~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~  282 (361)
T 2oiz_A          205 IAPALDKDKAHFVS--YYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHK  282 (361)
T ss_dssp             SCCEECSSEEEEEB--TTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTT
T ss_pred             EEecccCCEEEEEe--CCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccccc
Confidence            11223344555555  468899999875432  222211      0    011223789999888877653         


Q ss_pred             --CCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          200 --QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       200 --dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                        .++ +.+||+.+++.+.++..+.    +.+|+|+||++   +|++++. ++|.|||+++.
T Consensus       283 ~~~~~-v~viD~~t~~~v~~i~~~~----p~~ia~spdg~---~l~v~n~-~~v~v~D~~t~  335 (361)
T 2oiz_A          283 FPAAE-IWVMDTKTKQRVARIPGRD----ALSMTIDQQRN---LMLTLDG-GNVNVYDISQP  335 (361)
T ss_dssp             CCCSE-EEEEETTTTEEEEEEECTT----CCEEEEETTTT---EEEEECS-SCEEEEECSSS
T ss_pred             CCCce-EEEEECCCCcEEEEEecCC----eeEEEECCCCC---EEEEeCC-CeEEEEECCCC
Confidence              234 5799999999999886542    78899999999   8998887 99999999887

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.59  E-value=1.4e-12  Score=115.88  Aligned_cols=223  Identities=6%  Similarity=0.031  Sum_probs=144.1

Q ss_pred             CeEEEEECCCCcEEEEEecC--CceEEEEEcCCeEEEEE---CCeEEEEECCCCc-eeeEEeC-------CCCCceEEEE
Q 019349           75 RRLCLFNTTTGTALRELNFL--TSILAVRLNKKRLVIVL---REKTYIYDANTLA-ILDTIDT-------VPNLKGLCAF  141 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~-~~~~~~~-------~~~~~~~~~~  141 (342)
                      ++|.+||..+++.+..+...  ....+++++++..+.++   ++.|++||..... .+..+..       .........+
T Consensus        69 ~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~i  148 (329)
T 3fvz_A           69 DTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDV  148 (329)
T ss_dssp             CCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEE
T ss_pred             CcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEE
Confidence            58999999999887665432  36889999887644444   5799999985442 4555532       1122245667


Q ss_pred             eeCC-CccEEEEeCCCCccEEEEEEccCCceeEEEec----------ccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEc
Q 019349          142 SPSL-NACFLAVPASTTKGSVLVYNVMELHSHCEIDA----------HQAPLAAIVLSSN-GMYIATASEQGTIIRVFLV  209 (342)
Q Consensus       142 ~~~~-~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~----------h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~  209 (342)
                      +.++ ++.++++.+. .++.|++|| .+++.+..+..          +-.....|+++|+ |+++++...+++ |++||.
T Consensus       149 a~~~~~g~lyv~d~~-~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~-I~~~~~  225 (329)
T 3fvz_A          149 AVEPSTGAVFVSDGY-CNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGR-IQCFKT  225 (329)
T ss_dssp             EECTTTCCEEEEECS-SCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTE-EEEEET
T ss_pred             EEeCCCCeEEEEeCC-CCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCE-EEEEEC
Confidence            7777 6666666542 378999999 56677666642          2234899999998 677777767766 689999


Q ss_pred             CCCeeEEEeccCcCceeEEEEEEecCCCcccEEEE-------EeCCCcEEEEecCCCCCCCCCCCccccccccccccccc
Q 019349          210 SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA-------TSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNE  282 (342)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~-------~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (342)
                      .+|+.+..+........+.+++|+| +.   .+++       .+.+++|++|++.+++....       ++. .+..   
T Consensus       226 ~~G~~~~~~~~~~~~~~~~~~~~~p-g~---~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~-------~~~-~~~~---  290 (329)
T 3fvz_A          226 DTKEFVREIKHASFGRNVFAISYIP-GF---LFAVNGKPYFGDQEPVQGFVMNFSSGEIIDV-------FKP-VRKH---  290 (329)
T ss_dssp             TTCCEEEEECCTTTTTCEEEEEEET-TE---EEEEECCCCTTCSCCCCEEEEETTTCCEEEE-------ECC-SSSC---
T ss_pred             CCCcEEEEEeccccCCCcceeeecC-CE---EEEeCCCEEeccCCCcEEEEEEcCCCeEEEE-------EcC-CCCc---
Confidence            9899888875443444588999999 33   3333       33445899999876643221       000 0000   


Q ss_pred             cccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecC
Q 019349          283 VLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSIN  322 (342)
Q Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~  322 (342)
                      ...|       ..+++.++++.+++...++.|++|+++..
T Consensus       291 ~~~p-------~~ia~~~dG~lyvad~~~~~I~~~~~~~~  323 (329)
T 3fvz_A          291 FDMP-------HDIVASEDGTVYIGDAHTNTVWKFTLTEK  323 (329)
T ss_dssp             CSSE-------EEEEECTTSEEEEEESSSCCEEEEEEEEC
T ss_pred             cCCe-------eEEEECCCCCEEEEECCCCEEEEEeCCcc
Confidence            0011       12334555556666667999999988753

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.58  E-value=1.3e-13  Score=124.77  Aligned_cols=244  Identities=11%  Similarity=0.026  Sum_probs=146.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEee--CCEEEEEE--cCCCCeEEEEcCC-C--CC----------
Q 019349            9 PVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAV--GAFSIVEM--LYSSSLLAIVGAG-E--QP----------   70 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~g-~--~~----------   70 (342)
                      .+..++|+|||+.|+.++.+ .+.+||+.+++.......  +......+  ..+...++..... .  .+          
T Consensus        82 ~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T 3pe7_A           82 NTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEF  161 (388)
T ss_dssp             CSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHH
T ss_pred             CccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhh
Confidence            34467899999999888765 579999999865432222  22222222  3445554422100 0  00          


Q ss_pred             --CCCCCeEEEEECCCCcEEEEEecCCceEEEEEcC-CeEEE--EEC-------CeEEEEECCCCceeeEEeCCCCCceE
Q 019349           71 --SLSPRRLCLFNTTTGTALRELNFLTSILAVRLNK-KRLVI--VLR-------EKTYIYDANTLAILDTIDTVPNLKGL  138 (342)
Q Consensus        71 --~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~-~~~~~--~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~  138 (342)
                        ...+..|.+||+.+++..........+..+.|+| +...+  +..       ..|+++|...++. ..+........+
T Consensus       162 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~  240 (388)
T 3pe7_A          162 YFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNM-RKVKTHAEGESC  240 (388)
T ss_dssp             GGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCC-EESCCCCTTEEE
T ss_pred             hccCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCce-EEeeeCCCCccc
Confidence              0135789999999998766556666789999999 76433  332       2788888765533 233222222345


Q ss_pred             EEEeeCCCccEEEEeCCC---CccEEEEEEccCCcee--EEEecccCC---eeEEEECCCCCEEEEEe---------CCC
Q 019349          139 CAFSPSLNACFLAVPAST---TKGSVLVYNVMELHSH--CEIDAHQAP---LAAIVLSSNGMYIATAS---------EQG  201 (342)
Q Consensus       139 ~~~~~~~~~~~l~~~~~~---~~g~i~iwd~~~~~~~--~~~~~h~~~---v~~i~~s~dg~~lat~s---------~dg  201 (342)
                      ....++|++..|++.+..   .++.|.+||+.+++..  ..+.++...   ...++|+|||+.|+...         .+.
T Consensus       241 ~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~  320 (388)
T 3pe7_A          241 THEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDP  320 (388)
T ss_dssp             EEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCC
T ss_pred             ccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCC
Confidence            566788888877664421   1235999999988743  333331110   22247999999888653         334


Q ss_pred             cEEEEEEcCCCeeEEEeccCcC---------ceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCC
Q 019349          202 TIIRVFLVSEATKSYSFRRGTY---------PSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGF  258 (342)
Q Consensus       202 ~~irlwd~~~~~~~~~~~~~~~---------~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~  258 (342)
                      . |.+||+.+++.. .+..+..         ...+.+++|+||++   +|+.++ .+|..+||.++-
T Consensus       321 ~-i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~spDg~---~l~~~s~~~g~~~l~~~~l  382 (388)
T 3pe7_A          321 F-LYVFNMKNGTQH-RVARHDTSWKVFEGDRQVTHPHPSFTPDDK---QILFTSDVHGKPALYLATL  382 (388)
T ss_dssp             E-EEEEETTTTEEE-EEEECCCCCCCBTTBSSTTCCCCEECTTSS---EEEEEECTTSSCEEEEEEC
T ss_pred             E-EEEEeccCCceE-EeccccCcccccccccccCCCCccCCCCCC---EEEEEecCCCceeEEEEEC
Confidence            4 689999887653 3332211         00367789999998   777665 477777776543

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.57  E-value=7.2e-13  Score=130.62  Aligned_cols=192  Identities=15%  Similarity=0.065  Sum_probs=129.2

Q ss_pred             EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC------ceEEEEEcCCeE--EEEEC----------
Q 019349           51 IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT------SILAVRLNKKRL--VIVLR----------  112 (342)
Q Consensus        51 ~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~------~v~~i~~~~~~~--~~~~d----------  112 (342)
                      .+.+.+++.+++..         +++|++||+.++++...+..+.      ...++.++|++.  ++..+          
T Consensus        21 ~~~w~~dg~~~~~~---------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~   91 (740)
T 4a5s_A           21 SLRWISDHEYLYKQ---------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYT   91 (740)
T ss_dssp             CEEECSSSEEEEEE---------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred             ccEECCCCcEEEEc---------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence            35666666544432         5799999999999876665432      223478888854  33333          


Q ss_pred             CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEE-EecccCCe---------
Q 019349          113 EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCE-IDAHQAPL---------  182 (342)
Q Consensus       113 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~-~~~h~~~v---------  182 (342)
                      +.+++||+.+++... +..  .+..+...+++||+..||+..   ++.|.+||+.+++..+. ..++...+         
T Consensus        92 ~~~~~~d~~~~~~~~-l~~--~~~~~~~~~~SPdG~~la~~~---~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           92 ASYDIYDLNKRQLIT-EER--IPNNTQWVTWSPVGHKLAYVW---NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             EEEEEEETTTTEECC-SSC--CCTTEEEEEECSSTTCEEEEE---TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             eEEEEEECCCCcEEE-ccc--CCCcceeeEECCCCCEEEEEE---CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence            567899999986543 222  233567778889999999885   58899999988765432 22332222         


Q ss_pred             --------eEEEECCCCCEEEEEeCCCc-----------------------------------EEEEEEcCC---Ce--e
Q 019349          183 --------AAIVLSSNGMYIATASEQGT-----------------------------------IIRVFLVSE---AT--K  214 (342)
Q Consensus       183 --------~~i~~s~dg~~lat~s~dg~-----------------------------------~irlwd~~~---~~--~  214 (342)
                              ..+.|||||++||.++.|.+                                   .+++||+.+   ++  .
T Consensus       166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~  245 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT  245 (740)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred             cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence                    35899999999999875433                                   357899988   73  2


Q ss_pred             EEEeccC----cCceeEEEEEEecCCCcccEEEEEeC----CCcEEEEecCCCC
Q 019349          215 SYSFRRG----TYPSTIFSLSFGQSMQFQDILVATSS----SGSLHVFSPGFAI  260 (342)
Q Consensus       215 ~~~~~~~----~~~~~v~~l~fs~d~~~~~~l~~~s~----dg~i~vwd~~~~~  260 (342)
                      ..++...    .+...+..++||||++   +++....    +..|++||+++++
T Consensus       246 ~~~l~~~~~~~~~~~~~~~~~wspdg~---~~~~~~~r~~~~~~i~~~d~~tg~  296 (740)
T 4a5s_A          246 SIQITAPASMLIGDHYLCDVTWATQER---ISLQWLRRIQNYSVMDICDYDESS  296 (740)
T ss_dssp             EEEECCCHHHHTSCEEEEEEEEEETTE---EEEEEEESSTTEEEEEEEEEETTT
T ss_pred             EEEecCCccCCCCCeEEEEEEEeCCCe---EEEEEeCCCCCEEEEEEEECCCCc
Confidence            2334321    1344589999999998   7776643    3379999998765

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.56  E-value=4e-12  Score=110.15  Aligned_cols=177  Identities=13%  Similarity=0.062  Sum_probs=137.1

Q ss_pred             CCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccE
Q 019349           73 SPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
                      .++.|.+||.++|+.+.++..+.  .+.++.+.++..++++ ++.|+.||. +++.+.++..+.. ..+....+.+++..
T Consensus        13 ~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilvs~~~~V~~~d~-~G~~~W~~~~~~~-~~~~~~~~~~dG~~   90 (276)
T 3no2_A           13 GWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILFSYSKGAKMITR-DGRELWNIAAPAG-CEMQTARILPDGNA   90 (276)
T ss_dssp             TCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEEECBSEEEEECT-TSCEEEEEECCTT-CEEEEEEECTTSCE
T ss_pred             CCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEEeCCCCEEEECC-CCCEEEEEcCCCC-ccccccEECCCCCE
Confidence            48999999999999999988764  6888889887655545 779999999 8999999876422 34566677888888


Q ss_pred             EEEeCCCCccEEEEEEccCCceeEEEe------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349          150 LAVPASTTKGSVLVYNVMELHSHCEID------AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~~~~~~~~------~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~  223 (342)
                      +++... .++.|..+|. +++.+..+.      .+..+...+++.++|++|++.+.++++ ..||.. |+.+.++..+  
T Consensus        91 lv~~~~-~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v-~~~d~~-G~~~w~~~~~--  164 (276)
T 3no2_A           91 LVAWCG-HPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEV-REIAPN-GQLLNSVKLS--  164 (276)
T ss_dssp             EEEEES-TTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEE-EEECTT-SCEEEEEECS--
T ss_pred             EEEecC-CCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEE-EEECCC-CCEEEEEECC--
Confidence            887652 2677888885 677666654      222356677889999999999999875 699997 9999988654  


Q ss_pred             ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                       ....++.+.+++.   ++++++.++.|..+|.++++.
T Consensus       165 -~~~~~~~~~~~g~---~~v~~~~~~~v~~~d~~tG~~  198 (276)
T 3no2_A          165 -GTPFSSAFLDNGD---CLVACGDAHCFVQLNLESNRI  198 (276)
T ss_dssp             -SCCCEEEECTTSC---EEEECBTTSEEEEECTTTCCE
T ss_pred             -CCccceeEcCCCC---EEEEeCCCCeEEEEeCcCCcE
Confidence             2355677889998   888888888999999886654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.55  E-value=1.6e-12  Score=126.20  Aligned_cols=238  Identities=10%  Similarity=-0.037  Sum_probs=151.2

Q ss_pred             CCCCeEEEEEcCCCCEEEEE--cCCc-EEEEeCCCCcEEEEEeeC--CEE---------EEEEc--CCCCe-EEEEcCCC
Q 019349            6 SSYPVFFVSFNQDNSGFALS--TKDG-FKIFDSSTGRLCYERAVG--AFS---------IVEML--YSSSL-LAIVGAGE   68 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g--~~~g-~~v~d~~~~~~~~~~~~~--~~~---------~~~~~--~~~~~-~~~~~~g~   68 (342)
                      +...|..++|++++-+++.+  ..++ .+||....+........+  .+.         ...+.  ++++. +++.+.  
T Consensus        22 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~--   99 (662)
T 3azo_A           22 RSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHF--   99 (662)
T ss_dssp             TCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBT--
T ss_pred             cCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEEC--
Confidence            45679999999887667766  4455 588885333222222222  111         22333  66777 777664  


Q ss_pred             CCCCCCCeEEEEECC--C-CcEEEEEec------CCceEEEEEcCCe--EEEEE-C----------CeEEEEECCC----
Q 019349           69 QPSLSPRRLCLFNTT--T-GTALRELNF------LTSILAVRLNKKR--LVIVL-R----------EKTYIYDANT----  122 (342)
Q Consensus        69 ~~~~~d~~i~iwd~~--~-~~~~~~~~~------~~~v~~i~~~~~~--~~~~~-d----------~~i~i~d~~~----  122 (342)
                          .+..|.+|++.  . ++ ...+..      ...+.+++|++++  ++.+. +          .+|++||+.+    
T Consensus       100 ----~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  174 (662)
T 3azo_A          100 ----GDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAA  174 (662)
T ss_dssp             ----TTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTT
T ss_pred             ----CCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccc
Confidence                25677777775  3 44 333332      2367889999875  44444 4          4899999987    


Q ss_pred             --CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC------ccEEEEEEcc-CC---ceeEEEecccCCeeEEEECCC
Q 019349          123 --LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT------KGSVLVYNVM-EL---HSHCEIDAHQAPLAAIVLSSN  190 (342)
Q Consensus       123 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------~g~i~iwd~~-~~---~~~~~~~~h~~~v~~i~~s~d  190 (342)
                        ++. ..+. ..+......++++||+..|++.+.+.      ...|.+||+. ++   +.......|...+..++|+||
T Consensus       175 ~~~~~-~~l~-~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spd  252 (662)
T 3azo_A          175 DRSAV-RELS-DDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPD  252 (662)
T ss_dssp             CGGGS-EESS-CSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTT
T ss_pred             cCCce-eEEE-ecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCC
Confidence              443 3332 02223455667888999998776321      2589999998 56   444444556788999999999


Q ss_pred             CCEEEEEeCCCcE-EEEEEcCCCeeEEEeccCcCce-------eEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          191 GMYIATASEQGTI-IRVFLVSEATKSYSFRRGTYPS-------TIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       191 g~~lat~s~dg~~-irlwd~~~~~~~~~~~~~~~~~-------~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      |+++++++.+|.. |.+||+.+++.. .+..+....       .+.+++|+|+++   ++++++. ++++||.++
T Consensus       253 g~l~~~~~~~~~~~l~~~~~~~~~~~-~l~~~~~~~~~p~w~~~~~~~~~~~~~~---~~~~~~~-~~~~l~~~d  322 (662)
T 3azo_A          253 GSLIVATDRTGWWNLHRVDPATGAAT-QLCRREEEFAGPLWTPGMRWFAPLANGL---IAVVHGK-GAAVLGILD  322 (662)
T ss_dssp             SCEEEEECTTSSCEEEEECTTTCCEE-ESSCCSSBSSCCCCSTTCCSEEECTTSC---EEEEEBS-SSCEEEEEE
T ss_pred             CeEEEEECCCCCeEEEEEECCCCcee-ecccccccccCccccccCceEeEeCCCE---EEEEEEc-CccEEEEEE
Confidence            9988888888731 346666566543 332221110       045789999998   8999998 999999543

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.54  E-value=5.8e-12  Score=111.64  Aligned_cols=236  Identities=11%  Similarity=0.057  Sum_probs=149.0

Q ss_pred             CCCeEEEEEcCCCCEEEEE-cCCcEEEEeCCCCcEEEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            7 SYPVFFVSFNQDNSGFALS-TKDGFKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g-~~~g~~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      ...|.+++|++++..++.. ++..++.|.   ++......  ......+.+..+.+ +++++.      .++.|.+||..
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~-l~~~~~------~~~~i~~~d~~   74 (333)
T 2dg1_A            5 QQDLPTLFYSGKSNSAVPIISESELQTIT---AEPWLEISKKGLQLEGLNFDRQGQ-LFLLDV------FEGNIFKINPE   74 (333)
T ss_dssp             -CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEEEEEESSCCCEEEEEECTTSC-EEEEET------TTCEEEEECTT
T ss_pred             ccccceeeecCCccceeEEeecccCcccc---cceeEEEeccCccccCcEECCCCC-EEEEEC------CCCEEEEEeCC
Confidence            3568899999998876654 444578883   33322222  23344555655555 443433      36899999998


Q ss_pred             CCcEEEEE-ecCCceEEEEEcCCe-EEEEE-C-----CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349           84 TGTALREL-NFLTSILAVRLNKKR-LVIVL-R-----EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        84 ~~~~~~~~-~~~~~v~~i~~~~~~-~~~~~-d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      +++..... .....+.+++++++. ++++. .     +.|++||..+++....+........+..+..++++.++++...
T Consensus        75 ~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  154 (333)
T 2dg1_A           75 TKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFR  154 (333)
T ss_dssp             TCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred             CCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEecc
Confidence            88765544 344679999998775 45554 2     4899999987765433332222234667777888877765541


Q ss_pred             C----CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEE-eCCCcEEEEEEcCC-CeeEEEec-----cCcCc
Q 019349          156 T----TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATA-SEQGTIIRVFLVSE-ATKSYSFR-----RGTYP  224 (342)
Q Consensus       156 ~----~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~-s~dg~~irlwd~~~-~~~~~~~~-----~~~~~  224 (342)
                      .    ..+.|..+|..+++.. .+..+...++.++|+|||+.|+.+ +.++. |.+||+.+ ++.+..+.     .....
T Consensus       155 ~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~-i~~~d~~~~g~~~~~~~~~~~~~~~~~  232 (333)
T 2dg1_A          155 GYSTNPLGGVYYVSPDFRTVT-PIIQNISVANGIALSTDEKVLWVTETTANR-LHRIALEDDGVTIQPFGATIPYYFTGH  232 (333)
T ss_dssp             CBTTBCCEEEEEECTTSCCEE-EEEEEESSEEEEEECTTSSEEEEEEGGGTE-EEEEEECTTSSSEEEEEEEEEEECCSS
T ss_pred             ccccCCCceEEEEeCCCCEEE-EeecCCCcccceEECCCCCEEEEEeCCCCe-EEEEEecCCCcCcccccceEEEecCCC
Confidence            0    1356777776654433 333344567899999999866554 44565 57999964 43332211     00011


Q ss_pred             eeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          225 STIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      ..+..+++++++.   ++++...++.|.+||.+
T Consensus       233 ~~~~~i~~d~~G~---l~v~~~~~~~v~~~d~~  262 (333)
T 2dg1_A          233 EGPDSCCIDSDDN---LYVAMYGQGRVLVFNKR  262 (333)
T ss_dssp             SEEEEEEEBTTCC---EEEEEETTTEEEEECTT
T ss_pred             CCCCceEECCCCC---EEEEEcCCCEEEEECCC
Confidence            2478899999998   78888788999999974

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=2e-10  Score=99.61  Aligned_cols=232  Identities=4%  Similarity=0.002  Sum_probs=151.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-CCcEEEEeCCCCcEEEEE-e--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALST-KDGFKIFDSSTGRLCYER-A--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~-~~g~~v~d~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      .....+.+++++++|+..++.. .+++.+||.. ++..... .  ......+.+..+.... ++..      .++.|..|
T Consensus        12 ~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~------~~~~i~~~   83 (299)
T 2z2n_A           12 NQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVW-FTEN------AANKIGRI   83 (299)
T ss_dssp             SSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEE-EEET------TTTEEEEE
T ss_pred             CcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEE-EeCC------CCCeEEEE
Confidence            4456899999999999777665 3568999988 6544322 1  1334445554544443 3332      26789999


Q ss_pred             ECCCCcEEEEEec---CCceEEEEEcCCe-EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           81 NTTTGTALRELNF---LTSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        81 d~~~~~~~~~~~~---~~~v~~i~~~~~~-~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      |.. ++ ...+..   ...+.+++++++. ++++.  ++.|..||. +++.. .+...........++.++++.+.++..
T Consensus        84 ~~~-g~-~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~  159 (299)
T 2z2n_A           84 TKK-GI-IKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIR-EYELPNKGSYPSFITLGSDNALWFTEN  159 (299)
T ss_dssp             CTT-SC-EEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEE-EEECSSTTCCEEEEEECTTSCEEEEET
T ss_pred             CCC-Cc-EEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEE-EecCCCCCCCCceEEEcCCCCEEEEeC
Confidence            976 43 333332   2368899998764 55555  568999998 55443 232222233456777777777666554


Q ss_pred             CCCccEEEEEEccCCceeEE-EecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe
Q 019349          155 STTKGSVLVYNVMELHSHCE-IDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~-~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs  233 (342)
                        .++.|..||. +++.... +..+...+..++++++|++.++...++. |.+||. +++.. .+........+.+++++
T Consensus       160 --~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~  233 (299)
T 2z2n_A          160 --QNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNK-IGRITT-SGEIT-EFKIPTPNARPHAITAG  233 (299)
T ss_dssp             --TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEE-EEECSSTTCCEEEEEEC
T ss_pred             --CCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCce-EEEECC-CCcEE-EEECCCCCCCceeEEEC
Confidence              4688999998 6654432 3334566889999999997777666666 578998 66643 23222223458899999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecC
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +++.   ++++...++.|.+||.+
T Consensus       234 ~~g~---l~v~~~~~~~i~~~d~~  254 (299)
T 2z2n_A          234 AGID---LWFTEWGANKIGRLTSN  254 (299)
T ss_dssp             STTC---EEEEETTTTEEEEEETT
T ss_pred             CCCC---EEEeccCCceEEEECCC
Confidence            9998   77776678999999973

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.53  E-value=2.1e-11  Score=106.37  Aligned_cols=229  Identities=10%  Similarity=-0.039  Sum_probs=147.3

Q ss_pred             CCCeEEEEEcCCCC-EEEEEcCC-cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            7 SYPVFFVSFNQDNS-GFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         7 ~~~V~~l~fs~d~~-~la~g~~~-g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      ..-..+++|+|+|+ .++++..+ ++..||.+++...+.........+.+..+++.++...+       ++.|.+||..+
T Consensus        27 ~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~dg~l~v~~~~-------~~~i~~~d~~~   99 (296)
T 3e5z_A           27 FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQNGHCLNKQGHLIACSHG-------LRRLERQREPG   99 (296)
T ss_dssp             CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEEEEEECTTCCEEEEETT-------TTEEEEECSTT
T ss_pred             CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcceeeECCCCcEEEEecC-------CCeEEEEcCCC
Confidence            34567899999998 66677654 57999998872223333344556666666665443332       67999999988


Q ss_pred             CcEEEEEec-----CCceEEEEEcCCeEEEEEC--------------------CeEEEEECCCCceeeEEeCCCCCceEE
Q 019349           85 GTALRELNF-----LTSILAVRLNKKRLVIVLR--------------------EKTYIYDANTLAILDTIDTVPNLKGLC  139 (342)
Q Consensus        85 ~~~~~~~~~-----~~~v~~i~~~~~~~~~~~d--------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (342)
                      ++.......     ...+.++++++++.+.++|                    +.|+.++.. ++. ..+...  .....
T Consensus       100 g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~-~~~~~~--~~~~~  175 (296)
T 3e5z_A          100 GEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTL-SAPIRD--RVKPN  175 (296)
T ss_dssp             CCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCE-EEEECC--CSSEE
T ss_pred             CcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCE-EEeecC--CCCCc
Confidence            875443321     1245678898887555531                    255555554 433 333222  22345


Q ss_pred             EEeeCCCccEEEEeCCCCccEEEEEEcc-CCce---eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349          140 AFSPSLNACFLAVPASTTKGSVLVYNVM-ELHS---HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS  215 (342)
Q Consensus       140 ~~~~~~~~~~l~~~~~~~~g~i~iwd~~-~~~~---~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~  215 (342)
                      .++++|++..+++..  .++.|.+||+. +++.   ...+..+...+..|+++++|++.++.  ++. |.+||.. ++.+
T Consensus       176 gi~~s~dg~~lv~~~--~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~-v~~~~~~-g~~~  249 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDT--GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDG-VHVLTPD-GDEL  249 (296)
T ss_dssp             EEEECTTSCEEEEET--TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTE-EEEECTT-SCEE
T ss_pred             cEEECCCCCEEEEeC--CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCe-EEEECCC-CCEE
Confidence            567778888884443  57899999986 4443   23333455667889999999977766  555 5799986 7777


Q ss_pred             EEeccCcCceeEEEEEE-ecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          216 YSFRRGTYPSTIFSLSF-GQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l~f-s~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      ..+..+  .. +.+++| +|+++   .|.+++.++ +.-++.++.
T Consensus       250 ~~~~~~--~~-~~~~~f~~~d~~---~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          250 GRVLTP--QT-TSNLCFGGPEGR---TLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             EEEECS--SC-CCEEEEESTTSC---EEEEEETTE-EEEEECSCC
T ss_pred             EEEECC--CC-ceeEEEECCCCC---EEEEEcCCe-EEEEEcccc
Confidence            776533  22 788999 58888   888888763 444444433

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.53  E-value=1.1e-11  Score=121.69  Aligned_cols=244  Identities=7%  Similarity=-0.005  Sum_probs=158.7

Q ss_pred             CeEEEEEcCCCCEEEEEcC-C-----cEEEEeCCCCcEEEE-EeeCCEEEEEEcCCCCeEEEEcCCCCCC---------C
Q 019349            9 PVFFVSFNQDNSGFALSTK-D-----GFKIFDSSTGRLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPS---------L   72 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~-~-----g~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~---------~   72 (342)
                      .+..++|||||++||.+.+ +     .+++||+.+++.... .....+..+.|.++++.+++.+....+.         .
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCccccccccccccC
Confidence            5789999999999986643 2     479999999976542 2222244567888888888876532100         1


Q ss_pred             CCCeEEEEECCCCcE--EEEEec---CCceEEEEEcCCe--EEEEE------CCeEEEEECCC------Cc-eeeEEeCC
Q 019349           73 SPRRLCLFNTTTGTA--LRELNF---LTSILAVRLNKKR--LVIVL------REKTYIYDANT------LA-ILDTIDTV  132 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~--~~~~~~---~~~v~~i~~~~~~--~~~~~------d~~i~i~d~~~------~~-~~~~~~~~  132 (342)
                      ....|.+|++.+++.  ...+..   +..+..+.+++++  +++..      +..|++||+.+      +. ....+..+
T Consensus       206 ~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~  285 (710)
T 2xdw_A          206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (710)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCC
Confidence            134599999988762  222222   2347788998875  33333      34899999976      43 34555444


Q ss_pred             CCCceEEEEeeCCCccEEEEeCC-C-CccEEEEEEccCCc--eeEEEecccC--CeeEEEECCCCCEEEEEeCCCcE-EE
Q 019349          133 PNLKGLCAFSPSLNACFLAVPAS-T-TKGSVLVYNVMELH--SHCEIDAHQA--PLAAIVLSSNGMYIATASEQGTI-IR  205 (342)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~~-~-~~g~i~iwd~~~~~--~~~~~~~h~~--~v~~i~~s~dg~~lat~s~dg~~-ir  205 (342)
                      .... ...+++  ++..+++.+. + ..+.|.+||+.+++  ....+..|..  .+..++|++++.++++...|+.. |.
T Consensus       286 ~~~~-~~~~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~  362 (710)
T 2xdw_A          286 FEGE-YDYVTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQ  362 (710)
T ss_dssp             SSSC-EEEEEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEE
T ss_pred             CCcE-EEEEec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEE
Confidence            3322 223444  4445544432 1 24589999998764  2344555544  68889999888888999888853 45


Q ss_pred             EEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEE-eC---CCcEEEEecCCCC
Q 019349          206 VFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT-SS---SGSLHVFSPGFAI  260 (342)
Q Consensus       206 lwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~-s~---dg~i~vwd~~~~~  260 (342)
                      +||+.+|+.+..+..+  ...+..++++|++.   .|+.. +.   .++|++||+.+++
T Consensus       363 ~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~---~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          363 LHDLATGALLKIFPLE--VGSVVGYSGQKKDT---EIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEETTTCCEEEEECCC--SSEEEEEECCTTCS---EEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEECCCCCEEEecCCC--CceEEEEecCCCCC---EEEEEEeCCCCCCEEEEEECCCCc
Confidence            6787778777776533  45688899999986   55533 32   4689999998765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.52  E-value=1.3e-10  Score=110.55  Aligned_cols=233  Identities=15%  Similarity=0.116  Sum_probs=156.8

Q ss_pred             cCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeC-CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC--CCcEEEEE
Q 019349           16 NQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT--TGTALREL   91 (342)
Q Consensus        16 s~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~--~~~~~~~~   91 (342)
                      ++.+..+++..+++ +.++|..+++++.....+ ....+.+.++++++.+.+.       ++.|.+||+.  +++.+.++
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~~v~~SpDGr~lyv~~~-------dg~V~viD~~~~t~~~v~~i  236 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-------DGKVNMIDLWMKEPTTVAEI  236 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-------TSEEEEEETTSSSCCEEEEE
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCccceEECCCCCEEEEEcC-------CCeEEEEECCCCCCcEeEEE
Confidence            34444455555554 799999999887665543 3345677778888776653       7899999995  88888888


Q ss_pred             ecCCceEEEEEc----CC--eEEEEE--CCeEEEEECCCCceeeEEeCCCC--------Cc-eEEEEeeCCCccEEEEeC
Q 019349           92 NFLTSILAVRLN----KK--RLVIVL--REKTYIYDANTLAILDTIDTVPN--------LK-GLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        92 ~~~~~v~~i~~~----~~--~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~l~~~~  154 (342)
                      ........+.++    ++  .++++.  ++++.++|..+.+.++.+.+...        +. .+.++..++++..+++.-
T Consensus       237 ~~G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~  316 (567)
T 1qks_A          237 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  316 (567)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             ecCCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence            877778899998    35  355554  68999999999999988865321        11 334444445444444433


Q ss_pred             CCCccEEEEEEccCCcee--EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc-CcCceeEEEEE
Q 019349          155 STTKGSVLVYNVMELHSH--CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-GTYPSTIFSLS  231 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~--~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~-~~~~~~v~~l~  231 (342)
                      . ..|.|.++|....+.+  ..+. .......+.|+|||++|+++......|.++|+.+++.+..+.. +..+.+-..+.
T Consensus       317 ~-~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~  394 (567)
T 1qks_A          317 K-ETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN  394 (567)
T ss_dssp             T-TTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE
T ss_pred             c-CCCeEEEEecCCCccceeeeee-ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee
Confidence            3 5799999998776432  2332 3345678899999999887775333467999999998877755 32222111222


Q ss_pred             -EecCCCcccEEEEEe-CCCcEEEEecCCC
Q 019349          232 -FGQSMQFQDILVATS-SSGSLHVFSPGFA  259 (342)
Q Consensus       232 -fs~d~~~~~~l~~~s-~dg~i~vwd~~~~  259 (342)
                       ++|++.  ..++++. .+++|.++|.+..
T Consensus       395 ~~~p~~g--~v~~t~~~g~~~Vsvid~~~~  422 (567)
T 1qks_A          395 FVHPTFG--PVWATSHMGDDSVALIGTDPE  422 (567)
T ss_dssp             EEETTTE--EEEEEEBSSSSEEEEEECCTT
T ss_pred             eECCCCC--cEEEeCCCCCCeEEEecCCCC
Confidence             588754  1444443 4689999998864

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.52  E-value=1.2e-10  Score=110.85  Aligned_cols=234  Identities=14%  Similarity=0.109  Sum_probs=158.0

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEeCC--CCcEEEEEeeCC-EEEEEEc----CCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSS--TGRLCYERAVGA-FSIVEML----YSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g-~~v~d~~--~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      ..+..+.|+|||++|++++.++ +.+||+.  +++.+.+...+. -..+.+.    ++++++++...      .+++|.+
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~~ia~s~~~~pDGk~l~v~n~------~~~~v~V  270 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAY------WPPQYVI  270 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE------ETTEEEE
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCceeEEccccCCCCCEEEEEEc------cCCeEEE
Confidence            4567999999999998887765 7999995  777766554433 2345565    36777766654      4799999


Q ss_pred             EECCCCcEEEEEecC-----------C-ceEEEEEcCC--eEEEEE--CCeEEEEECCCCceee--EEeCCCCCceEEEE
Q 019349           80 FNTTTGTALRELNFL-----------T-SILAVRLNKK--RLVIVL--REKTYIYDANTLAILD--TIDTVPNLKGLCAF  141 (342)
Q Consensus        80 wd~~~~~~~~~~~~~-----------~-~v~~i~~~~~--~~~~~~--d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~  141 (342)
                      +|..+.+.+..+...           . .+..+..+++  .+++..  .++|.++|..+.+.+.  .+...   .....+
T Consensus       271 iD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~---~~~~d~  347 (567)
T 1qks_A          271 MDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAE---RFLHDG  347 (567)
T ss_dssp             EETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECC---SSEEEE
T ss_pred             EECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeecc---ccccCc
Confidence            999999998877532           1 4667777654  333333  5799999998764332  33222   224455


Q ss_pred             eeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec-----ccC-CeeEEEECCCCC-EEEEEe-CCCcEEEEEEcCC--
Q 019349          142 SPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA-----HQA-PLAAIVLSSNGM-YIATAS-EQGTIIRVFLVSE--  211 (342)
Q Consensus       142 ~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~-----h~~-~v~~i~~s~dg~-~lat~s-~dg~~irlwd~~~--  211 (342)
                      .+++++++++++.. .++.|.++|+.+++.+..+..     |.+ .++ + ++|++. ..+++. .+++ |.++|..+  
T Consensus       348 ~~~pdgr~~~va~~-~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~-~~p~~g~v~~t~~~g~~~-Vsvid~~~~~  423 (567)
T 1qks_A          348 GLDGSHRYFITAAN-ARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-F-VHPTFGPVWATSHMGDDS-VALIGTDPEG  423 (567)
T ss_dssp             EECTTSCEEEEEEG-GGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-E-EETTTEEEEEEEBSSSSE-EEEEECCTTT
T ss_pred             eECCCCCEEEEEeC-CCCeEEEEECCCCcEEEEEeccCcCCCCcccee-e-ECCCCCcEEEeCCCCCCe-EEEecCCCCC
Confidence            67788888766654 578999999999988776654     332 222 2 588754 445553 3466 57999987  


Q ss_pred             -----CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeC-------CCcEEEEecCCC
Q 019349          212 -----ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-------SGSLHVFSPGFA  259 (342)
Q Consensus       212 -----~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~-------dg~i~vwd~~~~  259 (342)
                           .+.+.++.... .+ -..+.++|+++   +|.+...       .++|.|||+++.
T Consensus       424 ~~~~~~kvv~~i~~~g-~g-~~~i~~~p~~~---~l~v~~~~~~~~~~~~~v~v~d~~~~  478 (567)
T 1qks_A          424 HPDNAWKILDSFPALG-GG-SLFIKTHPNSQ---YLYVDATLNPEAEISGSVAVFDIKAM  478 (567)
T ss_dssp             CTTTBTSEEEEEECSC-SC-CCCEECCTTCS---EEEEECTTCSSHHHHTCEEEEEGGGC
T ss_pred             CccccCEEEEEEecCC-CC-CEEEEeCCCCC---eEEEecCCCCCcccCceEEEEECCcc
Confidence                 55666665321 21 23367899999   7877663       459999999876

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.51  E-value=2.1e-12  Score=116.39  Aligned_cols=214  Identities=12%  Similarity=0.080  Sum_probs=135.5

Q ss_pred             CeEEEEEcCCCCEEEEEc---CCcEEEEeCCCCcEEEE-EeeCCEEEEEEcCCC-CeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            9 PVFFVSFNQDNSGFALST---KDGFKIFDSSTGRLCYE-RAVGAFSIVEMLYSS-SLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~---~~g~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      ....++|+|||++|+++.   ++.+.+||+.+++.+.. ...+....+.+.+.. ..++..+       .|+++.+|+..
T Consensus       109 ~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~-------~dg~~~~v~~~  181 (361)
T 2oiz_A          109 YDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC-------GDGGLLTINLG  181 (361)
T ss_dssp             CGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE-------TTSSEEEEEEC
T ss_pred             CcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC-------CCCcEEEEEEC
Confidence            456789999999998875   24589999999987766 444443333344443 3333333       37889999886


Q ss_pred             C-CcEEEEEe------cCCceEEE--EEcCCeEEEEE-CCeEEEEECCCCc--eeeEEeCCC--------CCce--EEEE
Q 019349           84 T-GTALRELN------FLTSILAV--RLNKKRLVIVL-REKTYIYDANTLA--ILDTIDTVP--------NLKG--LCAF  141 (342)
Q Consensus        84 ~-~~~~~~~~------~~~~v~~i--~~~~~~~~~~~-d~~i~i~d~~~~~--~~~~~~~~~--------~~~~--~~~~  141 (342)
                      . ++......      .......+  ...+..+++.. +++++++|+...+  ....+....        .+.+  ..++
T Consensus       182 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~  261 (361)
T 2oiz_A          182 EDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGL  261 (361)
T ss_dssp             TTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEE
T ss_pred             CCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEE
Confidence            5 55542221      11111111  12233444444 7799999997543  223332111        0111  2344


Q ss_pred             eeCCCccEEEEeCC---------CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349          142 SPSLNACFLAVPAS---------TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       142 ~~~~~~~~l~~~~~---------~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~  212 (342)
                      +  +++..+.++..         +..+.|.+||+.+++.+.++..+.  +.+|+|+|||++|++++. ++ |.+||..++
T Consensus       262 ~--~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~-v~v~D~~t~  335 (361)
T 2oiz_A          262 H--RASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-GN-VNVYDISQP  335 (361)
T ss_dssp             E--TTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-SC-EEEEECSSS
T ss_pred             e--cCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-Ce-EEEEECCCC
Confidence            4  44444443311         013589999999999999999887  899999999999999887 77 589999999


Q ss_pred             --eeEEEeccCcCceeEEEEEEecCCC
Q 019349          213 --TKSYSFRRGTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       213 --~~~~~~~~~~~~~~v~~l~fs~d~~  237 (342)
                        +.+.++...  ......++|+|||.
T Consensus       336 ~l~~~~~i~~~--G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          336 EPKLLRTIEGA--AEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEEETTS--CSSEEEEEECCCSC
T ss_pred             cceeeEEeccC--CCCcEEEEecCCCC
Confidence              988886322  22357789999985

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.50  E-value=1.6e-11  Score=105.32  Aligned_cols=234  Identities=6%  Similarity=-0.024  Sum_probs=146.1

Q ss_pred             CeEEEEEcCCCCEEE-EEcC-CcEEEEeCCCCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            9 PVFFVSFNQDNSGFA-LSTK-DGFKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         9 ~V~~l~fs~d~~~la-~g~~-~g~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      ...+++++++|+.++ +... .++.+||..+.........  .....+.+..+++ +.++..       ++.|.+||...
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~-l~v~~~-------~~~i~~~d~~~   96 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGT-VYVTDF-------NNRVVTLAAGS   96 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCC-EEEEET-------TTEEEEECTTC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCC-EEEEcC-------CCEEEEEeCCC
Confidence            678999999999666 4243 4578898766543221111  2233344544445 333332       57899999876


Q ss_pred             CcEEEEEecC--CceEEEEEcCCe-EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349           85 GTALRELNFL--TSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        85 ~~~~~~~~~~--~~v~~i~~~~~~-~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      +.. ..+...  ..+.+++++++. ++++.  ++.|.+|+..+......  ..........++.++++.++++..  .++
T Consensus        97 ~~~-~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~--~~~~~~~p~~i~~~~~g~l~v~~~--~~~  171 (270)
T 1rwi_B           97 NNQ-TVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVL--PFTGLNDPDGVAVDNSGNVYVTDT--DNN  171 (270)
T ss_dssp             SCC-EECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEEC--CCCSCCSCCCEEECTTCCEEEEEG--GGT
T ss_pred             ceE-eeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEee--ccccCCCceeEEEeCCCCEEEEEC--CCC
Confidence            543 223222  468899998765 44444  56899997655433221  111111233455566666655544  468


Q ss_pred             EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcc
Q 019349          160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQ  239 (342)
Q Consensus       160 ~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~  239 (342)
                      .|.+||............+...+..|+++++|.++++...++.+ .+||....... ..... ....+.+++++|+++  
T Consensus       172 ~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v-~~~~~~~~~~~-~~~~~-~~~~p~~i~~~~~g~--  246 (270)
T 1rwi_B          172 RVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQV-VKLLAGSTTST-VLPFT-GLNTPLAVAVDSDRT--  246 (270)
T ss_dssp             EEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCE-EEECTTCSCCE-ECCCC-SCSCEEEEEECTTCC--
T ss_pred             EEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcE-EEEcCCCCcce-eeccC-CCCCceeEEECCCCC--
Confidence            89999987765443333344678999999999888877777774 79998655432 22211 123488999999998  


Q ss_pred             cEEEEEeCCCcEEEEecCCCCC
Q 019349          240 DILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       240 ~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                       ++++...+++|++|++...+.
T Consensus       247 -l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          247 -VYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             -EEEEEGGGTEEEEECCCGGGS
T ss_pred             -EEEEECCCCEEEEEcCCCccc
Confidence             889999999999999876654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.48  E-value=2.9e-12  Score=124.50  Aligned_cols=242  Identities=13%  Similarity=0.027  Sum_probs=142.6

Q ss_pred             CCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC-CceE---------EEEEc--CC--e-EEEEEC--CeEEEEE
Q 019349           57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-TSIL---------AVRLN--KK--R-LVIVLR--EKTYIYD  119 (342)
Q Consensus        57 ~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~-~~v~---------~i~~~--~~--~-~~~~~d--~~i~i~d  119 (342)
                      +++.++++....   ..++...||....+.....+... ..+.         ...++  |+  . ++.+.+  ..|++++
T Consensus        32 s~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~  108 (662)
T 3azo_A           32 VGDEVWWVAPRP---AEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFE  108 (662)
T ss_dssp             ETTEEEEEEEET---TTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEEC
T ss_pred             cCCeEEEEecCc---ccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEc
Confidence            355555554310   03678889985444444444332 3444         45454  54  3 343433  4677777


Q ss_pred             CC--C-CceeeEEeCCC---CCceEEEEeeCCCccEEEEeCCCCc----------cEEEEEEccC------CceeEEEe-
Q 019349          120 AN--T-LAILDTIDTVP---NLKGLCAFSPSLNACFLAVPASTTK----------GSVLVYNVME------LHSHCEID-  176 (342)
Q Consensus       120 ~~--~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~----------g~i~iwd~~~------~~~~~~~~-  176 (342)
                      +.  . + ....+....   +......++++||+..|++...  +          ..|.+||+.+      ++. ..+. 
T Consensus       109 ~~~~g~~-~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~  184 (662)
T 3azo_A          109 PDAPGGA-VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAE--EFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSD  184 (662)
T ss_dssp             TTSTTCC-CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEE--EECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSC
T ss_pred             CCCCCCC-CCEeccCCccCCCCccccCcEECCCCCEEEEEEe--cccCCCCCCceeEEEEEECCCCccccCCce-eEEEe
Confidence            65  2 3 333443221   2345667888899999988763  3          5899999987      543 4555 


Q ss_pred             cccCCeeEEEECCCCCEEEEEeCCC-------cEEEEEEcC-CC--eeEEEeccCcCceeEEEEEEecCCCcccEEEEEe
Q 019349          177 AHQAPLAAIVLSSNGMYIATASEQG-------TIIRVFLVS-EA--TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       177 ~h~~~v~~i~~s~dg~~lat~s~dg-------~~irlwd~~-~~--~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s  246 (342)
                      .+...+..++|||||++||.++.++       ..|++||+. +|  .....+..+ +...+..++|+||++   ++++++
T Consensus       185 ~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-~~~~~~~~~~spdg~---l~~~~~  260 (662)
T 3azo_A          185 DAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG-PEEAIAQAEWAPDGS---LIVATD  260 (662)
T ss_dssp             SCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE-TTBCEEEEEECTTSC---EEEEEC
T ss_pred             cCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC-CCceEcceEECCCCe---EEEEEC
Confidence            5667788999999999999888654       346899998 57  233333222 234588999999999   888888


Q ss_pred             CCCc--EEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349          247 SSGS--LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       247 ~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                      .++.  |.+||+++++......        .........|++...     .+.+.+++..+++++. |.+++|.++...
T Consensus       261 ~~~~~~l~~~~~~~~~~~~l~~--------~~~~~~~p~w~~~~~-----~~~~~~~~~~~~~~~~-~~~~l~~~d~~~  325 (662)
T 3azo_A          261 RTGWWNLHRVDPATGAATQLCR--------REEEFAGPLWTPGMR-----WFAPLANGLIAVVHGK-GAAVLGILDPES  325 (662)
T ss_dssp             TTSSCEEEEECTTTCCEEESSC--------CSSBSSCCCCSTTCC-----SEEECTTSCEEEEEBS-SSCEEEEEETTT
T ss_pred             CCCCeEEEEEECCCCceeeccc--------ccccccCccccccCc-----eEeEeCCCEEEEEEEc-CccEEEEEECCC
Confidence            8884  5555554332211000        000001123444221     1223344456666666 888888877643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.48  E-value=2.1e-10  Score=101.47  Aligned_cols=230  Identities=10%  Similarity=-0.007  Sum_probs=143.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      ...+.+++|+|+|++++++..+ ++.+||.++++.....  ....+..+.+..+++.++....+.   ...+.|.+||..
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~---~~~~~i~~~d~~  120 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF---KSTGGIFAATEN  120 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTS---SSCCEEEEECTT
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCC---CCCceEEEEeCC
Confidence            3457899999999977777665 4899999888654332  234555666666665444332200   012689999998


Q ss_pred             CCcEEEEEe---cCCceEEEEEcCCeEEEEE-C--------CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           84 TGTALRELN---FLTSILAVRLNKKRLVIVL-R--------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        84 ~~~~~~~~~---~~~~v~~i~~~~~~~~~~~-d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      +++....+.   ....+.++.++++..+.++ .        +.|+.+|..+++.......   ......+++++++..+.
T Consensus       121 ~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~l~  197 (333)
T 2dg1_A          121 GDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKVLW  197 (333)
T ss_dssp             SCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSEEE
T ss_pred             CCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCCCEEE
Confidence            877543332   2246889999887644443 2        3566666555443322211   11245567778877555


Q ss_pred             EeCCCCccEEEEEEccC-CceeEE--------EecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc
Q 019349          152 VPASTTKGSVLVYNVME-LHSHCE--------IDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT  222 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~-~~~~~~--------~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~  222 (342)
                      ++.. .++.|.+||+.+ ++.+..        +.++ ..+..++++++|+++++...++.+ .+||. +++.+..+....
T Consensus       198 v~~~-~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v-~~~d~-~g~~~~~~~~~~  273 (333)
T 2dg1_A          198 VTET-TANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRV-LVFNK-RGYPIGQILIPG  273 (333)
T ss_dssp             EEEG-GGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEE-EEECT-TSCEEEEEECTT
T ss_pred             EEeC-CCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEE-EEECC-CCCEEEEEEcCC
Confidence            4443 468999999964 332221        1122 367889999999988888777774 79998 577666664321


Q ss_pred             C----ceeEEEEEEecCCCcccEEEEEeCCC
Q 019349          223 Y----PSTIFSLSFGQSMQFQDILVATSSSG  249 (342)
Q Consensus       223 ~----~~~v~~l~fs~d~~~~~~l~~~s~dg  249 (342)
                      .    ...+.+++|+||++   .|.+++.++
T Consensus       274 ~~~g~~~~~~~~~~~~dg~---~L~v~~~~g  301 (333)
T 2dg1_A          274 RDEGHMLRSTHPQFIPGTN---QLIICSNDI  301 (333)
T ss_dssp             GGGTCSCBCCEEEECTTSC---EEEEEEECG
T ss_pred             CccccccCcceEEECCCCC---EEEEEeCcc
Confidence            1    01478899999986   666665553

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.48  E-value=7.2e-12  Score=113.36  Aligned_cols=235  Identities=11%  Similarity=-0.007  Sum_probs=140.5

Q ss_pred             EEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee-CCE-EE---E----------------EEcCCCCeEEEEcCCCC
Q 019349           12 FVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV-GAF-SI---V----------------EMLYSSSLLAIVGAGEQ   69 (342)
Q Consensus        12 ~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~-~~~-~~---~----------------~~~~~~~~~~~~~~g~~   69 (342)
                      .+.|+|||++|+.++.+. +.+||+.+++....... ... ..   +                .+.++++.+++....  
T Consensus        85 ~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~--  162 (396)
T 3c5m_A           85 GGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFY--  162 (396)
T ss_dssp             TCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHH--
T ss_pred             cceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeec--
Confidence            378999999998776654 89999988864332221 111 10   0                111122222221100  


Q ss_pred             CCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcC-Ce--EEEEEC-------CeEEEEECCCCceeeEEeCCCCCceEE
Q 019349           70 PSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNK-KR--LVIVLR-------EKTYIYDANTLAILDTIDTVPNLKGLC  139 (342)
Q Consensus        70 ~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~-~~--~~~~~d-------~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (342)
                      ....+..|.+||+.+++..........+..+.|++ +.  ++.+.+       ..|++||+..++.. .+..+.....+.
T Consensus       163 ~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~  241 (396)
T 3c5m_A          163 HTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVR-KIKEHAEGESCT  241 (396)
T ss_dssp             HTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCE-ESSCCCTTEEEE
T ss_pred             cCCCcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCcee-EeeccCCCcccc
Confidence            00136789999999988766666666788999998 44  333442       36888998765422 222211123455


Q ss_pred             EEeeCCCccEEEEeCCC---CccEEEEEEccCCceeEEEecccCCeeEEEECC-CCCEEEEEeC----------------
Q 019349          140 AFSPSLNACFLAVPAST---TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS-NGMYIATASE----------------  199 (342)
Q Consensus       140 ~~~~~~~~~~l~~~~~~---~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~-dg~~lat~s~----------------  199 (342)
                      .+.++|++..|++.+..   ..+.|.+||+.+++....... . ... +.|+| ||++|++++.                
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~  318 (396)
T 3c5m_A          242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN  318 (396)
T ss_dssp             EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred             ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence            67788888877766421   125699999988765432221 1 233 88999 9999988652                


Q ss_pred             CCcEEEEEEcCCCeeEEEeccCcCce---------eEEEEEEecCCCcccEEEEEeC-CCcEEEEecC
Q 019349          200 QGTIIRVFLVSEATKSYSFRRGTYPS---------TIFSLSFGQSMQFQDILVATSS-SGSLHVFSPG  257 (342)
Q Consensus       200 dg~~irlwd~~~~~~~~~~~~~~~~~---------~v~~l~fs~d~~~~~~l~~~s~-dg~i~vwd~~  257 (342)
                      ++. |.+||+.+++.. .+..+...-         .+..++|+||++   +|+.++. ++...||.++
T Consensus       319 ~~~-i~~~d~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~---~l~~~s~~~~~~~l~~~~  381 (396)
T 3c5m_A          319 DPF-LYVLNTKAKSAQ-KLCKHSTSWDVLDGDRQITHPHPSFTPNDD---GVLFTSDFEGVPAIYIAD  381 (396)
T ss_dssp             CCE-EEEEETTTTBCC-EEEECCCCCCCBTTBSSTTCCCCEECTTSS---EEEEEECTTSSCEEEEEE
T ss_pred             CCc-EEEEecccCceE-EccCCCCccccccccccCCCCCceEccCCC---eEEEEecCCCCceEEEEE
Confidence            244 679999887643 232221100         145678999998   7777665 5666666554

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.47  E-value=2.2e-10  Score=100.28  Aligned_cols=231  Identities=11%  Similarity=0.046  Sum_probs=146.1

Q ss_pred             CeEEEEEcCCCCEEEE--------EcCCcEEEEeCCCCcEEEEE------eeCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349            9 PVFFVSFNQDNSGFAL--------STKDGFKIFDSSTGRLCYER------AVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~--------g~~~g~~v~d~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (342)
                      ...+++|+++|..+++        ..+.++.+||..+++.....      ....+..+.+..+...+.++..       .
T Consensus        19 ~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-------~   91 (314)
T 1pjx_A           19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------R   91 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------T
T ss_pred             CccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-------C
Confidence            4579999999987777        34456899998887654321      1233444444444234444443       3


Q ss_pred             CeEEEEECCCCcEEEE-EecC-----CceEEEEEcCCe-EEEEEC-----------------CeEEEEECCCCceeeEEe
Q 019349           75 RRLCLFNTTTGTALRE-LNFL-----TSILAVRLNKKR-LVIVLR-----------------EKTYIYDANTLAILDTID  130 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~-~~~~-----~~v~~i~~~~~~-~~~~~d-----------------~~i~i~d~~~~~~~~~~~  130 (342)
                      +.|.+||.. ++.... ....     ..+.+++++++. ++++..                 +.|..|+.. ++......
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence            479999988 665433 2211     247889998775 444442                 356667655 44333222


Q ss_pred             CCCCCceEEEEeeC----CCccEEEEeCCCCccEEEEEEcc-CCc-----eeEEEeccc-CCeeEEEECCCCCEEEEEeC
Q 019349          131 TVPNLKGLCAFSPS----LNACFLAVPASTTKGSVLVYNVM-ELH-----SHCEIDAHQ-APLAAIVLSSNGMYIATASE  199 (342)
Q Consensus       131 ~~~~~~~~~~~~~~----~~~~~l~~~~~~~~g~i~iwd~~-~~~-----~~~~~~~h~-~~v~~i~~s~dg~~lat~s~  199 (342)
                      ....   ...++.+    +++..+..+.. .++.|.+||.. +++     ....+..+. ..+..++++++|+++++...
T Consensus       170 ~~~~---~~~i~~~~~~d~dg~~l~v~~~-~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~  245 (314)
T 1pjx_A          170 AFQF---PNGIAVRHMNDGRPYQLIVAET-PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG  245 (314)
T ss_dssp             EESS---EEEEEEEECTTSCEEEEEEEET-TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET
T ss_pred             CCCC---cceEEEecccCCCCCEEEEEEC-CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC
Confidence            1111   2334455    77755554443 46889999986 443     223334443 56789999999998888877


Q ss_pred             CCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEE-eCCCcEEEEecCC
Q 019349          200 QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPGF  258 (342)
Q Consensus       200 dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~-s~dg~i~vwd~~~  258 (342)
                      ++.+ .+||..+++.+..+..+  ...+.+++|+|+++   +|.++ ..++.|..|+++.
T Consensus       246 ~~~i-~~~d~~~g~~~~~~~~~--~~~~~~i~~~~dg~---~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          246 SSHI-EVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTK---TIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             TTEE-EEECTTCBSCSEEEECS--SSCEEEEEECTTSS---EEEEEETTTTEEEEEECSS
T ss_pred             CCEE-EEEcCCCCcEeEEEeCC--CCCceeEEECCCCC---EEEEEeCCCCeEEEEeCCC
Confidence            7764 79999878766665432  24588999999997   66555 4568999999865

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.47  E-value=3.2e-11  Score=107.38  Aligned_cols=223  Identities=10%  Similarity=0.047  Sum_probs=141.1

Q ss_pred             CCeEEEEEcCCCCEEEEEc----------CCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349            8 YPVFFVSFNQDNSGFALST----------KDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~----------~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      ..+...+|  ||++++...          ...+.+||+.+++...-   ..+....+.++++.+++++...+  .....|
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l---~~~~~~~~SpDg~~la~~~~~~~--~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI---ENATMPRISPDGKKIAFMRANEE--KKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE---ESCEEEEECTTSSEEEEEEEETT--TTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc---ccCCCeEECCCCCEEEEEEeccC--CCcceE
Confidence            35778888  999887542          12267889888764322   44566788888998888764210  012358


Q ss_pred             EEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE-C---------------------------CeEEEEECCCCceee
Q 019349           78 CLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-R---------------------------EKTYIYDANTLAILD  127 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~-d---------------------------~~i~i~d~~~~~~~~  127 (342)
                      .+||+.+++.......+. +..+.|+|+.  ++++. +                           ..|++||+.+++.+.
T Consensus        88 ~~~~~~~g~~~~l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~  166 (347)
T 2gop_A           88 WVADLETLSSKKILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIE  166 (347)
T ss_dssp             EEEETTTTEEEEEEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEE
T ss_pred             EEEECCCCceEEEEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEe
Confidence            889998887665555555 8899998774  44443 2                           479999999887645


Q ss_pred             EEeCCCCCceEEEEeeCCCccEEEEeCCCCc----c-EEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC-
Q 019349          128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTK----G-SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG-  201 (342)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----g-~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg-  201 (342)
                      .+.. .   .+..++++|++ +++++..+.+    . ...||.+.+++ ...+..+ ..+..+  +|||++|+.++.++ 
T Consensus       167 ~l~~-~---~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~~-~~~~~~--spdg~~l~~~~~~~~  237 (347)
T 2gop_A          167 EFEK-P---RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFEK-VSFYAV--DSDGERILLYGKPEK  237 (347)
T ss_dssp             EEEE-E---TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEEE-ESEEEE--EECSSCEEEEECCSS
T ss_pred             eecC-C---CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEeccC-cceeeE--CCCCCEEEEEEcccc
Confidence            5543 2   33455666778 5555532111    1 33444443444 3444445 555554  99999999888553 


Q ss_pred             ------cEEEEEEcCCCeeEEEeccCcCceeEEE-EEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          202 ------TIIRVFLVSEATKSYSFRRGTYPSTIFS-LSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       202 ------~~irlwd~~~~~~~~~~~~~~~~~~v~~-l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                            .-|.+||  +++. ..+..+ +...+.. ++|+ |+    ++++++.++.++|| +.
T Consensus       238 ~~~~~~~~l~~~d--~~~~-~~l~~~-~~~~~~~~~~~s-dg----~~~~~~~~~~~~l~-~~  290 (347)
T 2gop_A          238 KYMSEHNKLYIYD--GKEV-MGILDE-VDRGVGQAKIKD-GK----VYFTLFEEGSVNLY-IW  290 (347)
T ss_dssp             SCCCSSCEEEEEC--SSCE-EESSTT-CCSEEEEEEEET-TE----EEEEEEETTEEEEE-EE
T ss_pred             CCccccceEEEEC--CCce-Eecccc-CCcccCCccEEc-Cc----EEEEEecCCcEEEE-Ec
Confidence                  2245777  5543 333222 2345775 8998 65    68889999999999 87

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.46  E-value=7.4e-11  Score=102.12  Aligned_cols=223  Identities=7%  Similarity=0.006  Sum_probs=157.3

Q ss_pred             CCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeC---CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEe
Q 019349           17 QDNSGFALSTKDG-FKIFDSSTGRLCYERAVG---AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELN   92 (342)
Q Consensus        17 ~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~   92 (342)
                      ..++.|++++.++ +.+||.++++++.+...+   ....+.+.++++.++  +.       ++.|..||. +|+.+.++.
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~-------~~~V~~~d~-~G~~~W~~~   72 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SY-------SKGAKMITR-DGRELWNIA   72 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--EC-------BSEEEEECT-TSCEEEEEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eC-------CCCEEEECC-CCCEEEEEc
Confidence            3457788888776 699999999988776543   345567777777666  32       578999999 899999988


Q ss_pred             cC--CceEEEEEcCCeEEEEE--C--CeEEEEECCCCceeeEEeCCCCC----ceEEEEeeCCCccEEEEeCCCCccEEE
Q 019349           93 FL--TSILAVRLNKKRLVIVL--R--EKTYIYDANTLAILDTIDTVPNL----KGLCAFSPSLNACFLAVPASTTKGSVL  162 (342)
Q Consensus        93 ~~--~~v~~i~~~~~~~~~~~--d--~~i~i~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~g~i~  162 (342)
                      .+  ..+.++.+.++..+++.  +  +.+..+|. +++.+.++......    .....+++.+++.++++..  .++.|.
T Consensus        73 ~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~--~~~~v~  149 (276)
T 3no2_A           73 APAGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLF--ATSEVR  149 (276)
T ss_dssp             CCTTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEET--TTTEEE
T ss_pred             CCCCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEec--CCCEEE
Confidence            75  36778888777544433  3  35666664 67777776532210    1111234566777888766  589999


Q ss_pred             EEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc----CceeEEEEEEecCCCc
Q 019349          163 VYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT----YPSTIFSLSFGQSMQF  238 (342)
Q Consensus       163 iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~----~~~~v~~l~fs~d~~~  238 (342)
                      .||.. ++.+..+..+ ..+.++.+.++|+.+++++.++++ ..+|..+|+.+.++....    ....+..++..+++. 
T Consensus       150 ~~d~~-G~~~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v-~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~~G~-  225 (276)
T 3no2_A          150 EIAPN-GQLLNSVKLS-GTPFSSAFLDNGDCLVACGDAHCF-VQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQNGG-  225 (276)
T ss_dssp             EECTT-SCEEEEEECS-SCCCEEEECTTSCEEEECBTTSEE-EEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECTTSC-
T ss_pred             EECCC-CCEEEEEECC-CCccceeEcCCCCEEEEeCCCCeE-EEEeCcCCcEEEEecCCCCCCccccccccceEcCCCC-
Confidence            99988 9988888765 345677889999999998888775 699999999999886321    112378889999998 


Q ss_pred             ccEEEEEeCC--------CcEEEEecCC
Q 019349          239 QDILVATSSS--------GSLHVFSPGF  258 (342)
Q Consensus       239 ~~~l~~~s~d--------g~i~vwd~~~  258 (342)
                        ++++.+..        +..+++++..
T Consensus       226 --i~v~~~~g~~~~~~~~~~~~~~~~~~  251 (276)
T 3no2_A          226 --LYICNWQGHDREAGKGKHPQLVEIDS  251 (276)
T ss_dssp             --EEEEEECTTCTTGGGSCCCSEEEECT
T ss_pred             --EEEEeccCccccccccCCceEEEECC
Confidence              77666421        2456777643

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.46  E-value=4e-10  Score=101.80  Aligned_cols=235  Identities=14%  Similarity=0.028  Sum_probs=149.7

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEeCCCCcEEEEEeeC---------CEEEEEEcCCCCeEEEEcCCCCCC
Q 019349           12 FVSFNQDNSGFALST-----------KDGFKIFDSSTGRLCYERAVG---------AFSIVEMLYSSSLLAIVGAGEQPS   71 (342)
Q Consensus        12 ~l~fs~d~~~la~g~-----------~~g~~v~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~   71 (342)
                      .++|+|||++|+++.           ++.+.+||..+.+.+.....+         .-..+.+.++++.+.+....    
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----  145 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----  145 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC----
Confidence            899999999998875           345789999988766544322         12245677788888777541    


Q ss_pred             CCCCeEEEEECCCCcEEEE-EecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeC-----CCCCceE-EEEee
Q 019349           72 LSPRRLCLFNTTTGTALRE-LNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDT-----VPNLKGL-CAFSP  143 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~-----~~~~~~~-~~~~~  143 (342)
                       .++.|.++| .+++.+.+ +..+..+.-....+..++... |+++.++|. +++.......     ...+... ..+..
T Consensus       146 -~~~~v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~  222 (373)
T 2mad_H          146 -AGPAVGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQAN  222 (373)
T ss_pred             -CCCeEEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEe
Confidence             257899999 99998888 766554322222222333332 889999999 8776643321     1111101 11222


Q ss_pred             CCCccEEEEeCCCCccEEEEEEccCCc--eeEEEecc----------cCCeeEEEECCCCCEEEEEeC----------CC
Q 019349          144 SLNACFLAVPASTTKGSVLVYNVMELH--SHCEIDAH----------QAPLAAIVLSSNGMYIATASE----------QG  201 (342)
Q Consensus       144 ~~~~~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~~h----------~~~v~~i~~s~dg~~lat~s~----------dg  201 (342)
                      .  +..+++..  ..+.+.+.|+....  .+..+...          ......++++||++.|..+..          .+
T Consensus       223 ~--~~~~~~~~--~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~  298 (373)
T 2mad_H          223 K--SGRIVWPV--YSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAK  298 (373)
T ss_pred             c--CCEEEEEc--CCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCC
Confidence            2  22333333  35789999987553  22233211          122445889999998887654          23


Q ss_pred             cEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCCCCCCC
Q 019349          202 TIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAINQR  263 (342)
Q Consensus       202 ~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~~~~  263 (342)
                      + |.++|+.+++.+.++..+.   ...+++|+||++  .+|+++. .+++|.|||+++.+..+
T Consensus       299 ~-V~VID~~t~~vv~~i~~g~---~p~~i~~s~Dg~--~~l~v~~~~~~~V~ViD~~t~~vv~  355 (373)
T 2mad_H          299 E-VTSVTGLVGQTSSQISLGH---DVDAISVAQDGG--PDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             e-EEEEECCCCEEEEEEECCC---CcCeEEECCCCC--eEEEEEcCCCCeEEEEECCCCCEEe
Confidence            4 5799999999988885442   468899999997  1455555 48999999999877543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.43  E-value=6.1e-12  Score=123.15  Aligned_cols=243  Identities=9%  Similarity=0.006  Sum_probs=149.6

Q ss_pred             CCeEEEEEcCCCCEEEEE-----cCC-cEEEEeCCCCcEEEEEeeCCE--EEEEEcCCCCeEEEEcCCCCC------CCC
Q 019349            8 YPVFFVSFNQDNSGFALS-----TKD-GFKIFDSSTGRLCYERAVGAF--SIVEMLYSSSLLAIVGAGEQP------SLS   73 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g-----~~~-g~~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~------~~~   73 (342)
                      ..+.+++|||||++||.+     +++ .+++||+.+++.+........  ..+.|.++++.+++.+.....      ...
T Consensus       121 ~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~  200 (695)
T 2bkl_A          121 VSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPG  200 (695)
T ss_dssp             EEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred             EEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCC
Confidence            468899999999999843     222 379999999876411111222  456788888888887652110      001


Q ss_pred             CCeEEEEECCCCcE--EEEEec---CCceEEEEEcCCe--EEEEE-CC----eEEEEECCCCceeeEEeCCCCCceEEEE
Q 019349           74 PRRLCLFNTTTGTA--LRELNF---LTSILAVRLNKKR--LVIVL-RE----KTYIYDANTLAILDTIDTVPNLKGLCAF  141 (342)
Q Consensus        74 d~~i~iwd~~~~~~--~~~~~~---~~~v~~i~~~~~~--~~~~~-d~----~i~i~d~~~~~~~~~~~~~~~~~~~~~~  141 (342)
                      ...|++|++.+++.  ...+..   ...+.++.+++++  +++.. ++    .|++++..+++. ..+..+.... ...+
T Consensus       201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~~~~~~~-~~~~  278 (695)
T 2bkl_A          201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLVKGVGAK-YEVH  278 (695)
T ss_dssp             GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEEECSSCC-EEEE
T ss_pred             CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCce-EEeecCCCce-EEEE
Confidence            23499999988762  222222   2367889999875  33333 44    677777655543 3333332221 2222


Q ss_pred             eeCCCccEEEEeCCC-CccEEEEEEccCCce---eEEEecc-cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC-CCeeE
Q 019349          142 SPSLNACFLAVPAST-TKGSVLVYNVMELHS---HCEIDAH-QAPLAAIVLSSNGMYIATASEQGTIIRVFLVS-EATKS  215 (342)
Q Consensus       142 ~~~~~~~~l~~~~~~-~~g~i~iwd~~~~~~---~~~~~~h-~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~-~~~~~  215 (342)
                      .+  ++.+++....+ .++.|.+||+.+++.   ...+..+ ...+..++++ ++.++++...|+. .+||.+. +++.+
T Consensus       279 ~~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~g~~~  354 (695)
T 2bkl_A          279 AW--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDAT-SEVRVATLKGKPV  354 (695)
T ss_dssp             EE--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTE-EEEEEEETTCCEE
T ss_pred             ec--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCCCCee
Confidence            23  33344444311 358999999987653   3333333 4568889998 7788899998986 4788664 46555


Q ss_pred             EEeccCcCceeEEEEEEecCCCcccEEEEEe----CCCcEEEEecCCCC
Q 019349          216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATS----SSGSLHVFSPGFAI  260 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s----~dg~i~vwd~~~~~  260 (342)
                      ..+... ....+..++++||+.   .|+...    ..++|++||+++++
T Consensus       355 ~~l~~~-~~~~v~~~~~s~d~~---~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          355 RTVQLP-GVGAASNLMGLEDLD---DAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EECCCS-SSSEECCCBSCTTCS---EEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEecCC-CCeEEEEeecCCCCC---EEEEEEcCCCCCCEEEEEECCCCc
Confidence            555322 244577889999987   566333    24689999997654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.41  E-value=1.9e-10  Score=103.31  Aligned_cols=237  Identities=13%  Similarity=0.033  Sum_probs=154.4

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEeCCCCcEEEEEeeC---------CEEEEEEcCCCCeEEEEcCCCCCC
Q 019349           12 FVSFNQDNSGFALST-----------KDGFKIFDSSTGRLCYERAVG---------AFSIVEMLYSSSLLAIVGAGEQPS   71 (342)
Q Consensus        12 ~l~fs~d~~~la~g~-----------~~g~~v~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~   71 (342)
                      .++++|||++|+++.           ++.+.+||..+.+.+.....+         .-..+.+.++++.+.+....    
T Consensus        82 ~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~----  157 (386)
T 3sjl_D           82 NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----  157 (386)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----
T ss_pred             cEEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcC----
Confidence            399999999887765           345799999999877665432         12235667788877766531    


Q ss_pred             CCCCeEEEEECCCCcEEEEEecCCceEEEEE-cCCeEEEEE-CCeEEEEECCC-CceeeEEeCCCCCc--eE---EEEee
Q 019349           72 LSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKRLVIVL-REKTYIYDANT-LAILDTIDTVPNLK--GL---CAFSP  143 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~~~~~~-d~~i~i~d~~~-~~~~~~~~~~~~~~--~~---~~~~~  143 (342)
                       .++.|.++|+.+++.+.++..+.. ..+.. ....++..+ |+++.+.++.+ ++..........+.  .+   ..+. 
T Consensus       158 -~~~~VsVID~~t~~vv~tI~v~g~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~-  234 (386)
T 3sjl_D          158 -PAPAVGVVDLEGKAFKRMLDVPDC-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYS-  234 (386)
T ss_dssp             -SSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEE-
T ss_pred             -CCCeEEEEECCCCcEEEEEECCCc-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceeccccccccccceeE-
Confidence             268999999999999999977653 22222 233344444 89999999976 55432221111111  11   1222 


Q ss_pred             CCCccEEEEeCCCCccEEEEEEccCCc--eeEEEe---------c-ccCCeeEEEECCCCCEEEEEeCC---------Cc
Q 019349          144 SLNACFLAVPASTTKGSVLVYNVMELH--SHCEID---------A-HQAPLAAIVLSSNGMYIATASEQ---------GT  202 (342)
Q Consensus       144 ~~~~~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~---------~-h~~~v~~i~~s~dg~~lat~s~d---------g~  202 (342)
                      .+++.++. ..  .+|+|.+.|+.+..  .+..+.         + .......++++++++.|...-.+         +.
T Consensus       235 ~~dG~~~~-vs--~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~  311 (386)
T 3sjl_D          235 QKAGRLVW-PT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASR  311 (386)
T ss_dssp             TTTTEEEE-EB--TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEE
T ss_pred             cCCCcEEE-Ee--CCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCC
Confidence            24554444 33  36899999997654  233332         0 12344567889999988886431         12


Q ss_pred             EEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEE-eCCCcEEEEecCCCCCCC
Q 019349          203 IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       203 ~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~-s~dg~i~vwd~~~~~~~~  263 (342)
                      -|-+.|+.+++.+.++..+   ..+.+|+|+||++  ++|.++ ..+++|.++|..+.+..+
T Consensus       312 ~V~viD~~t~kv~~~i~vg---~~~~~lavs~D~~--~~ly~tn~~~~~VsViD~~t~k~~~  368 (386)
T 3sjl_D          312 FVVVLDAKTGERLAKFEMG---HEIDSINVSQDEK--PLLYALSTGDKTLYIHDAESGEELR  368 (386)
T ss_dssp             EEEEEETTTCCEEEEEEEE---EEECEEEECSSSS--CEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEEEEECCCCeEEEEEECC---CCcceEEECCCCC--eEEEEEcCCCCeEEEEECCCCcEEE
Confidence            3469999999999988644   3588999999985  256665 458999999998876543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.39  E-value=2.5e-10  Score=111.97  Aligned_cols=205  Identities=5%  Similarity=-0.065  Sum_probs=133.4

Q ss_pred             EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE-CCe-----------
Q 019349           49 FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-REK-----------  114 (342)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~-d~~-----------  114 (342)
                      +....+.++++.+++.....  .....+|++||+.+++.+........+.++.|+++.  ++... ++.           
T Consensus       127 ~~~~~~SPDg~~la~~~~~~--G~~~~~i~v~d~~tg~~~~~~~~~~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~  204 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSAS--GSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEET--TCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             EEEEEECCCCCEEEEEEcCC--CCceEEEEEEECCCCCCCcccccCcccceEEEEeCCCEEEEEEECCcccccccccccc
Confidence            45567888888888775310  012248999999999876533222236678998874  44444 333           


Q ss_pred             -----EEEEECCCCcee--eEEeCCCCCceEEEEeeCCCccEEEEeCCCC---ccEEEEEEccC------Cc-eeEEEec
Q 019349          115 -----TYIYDANTLAIL--DTIDTVPNLKGLCAFSPSLNACFLAVPASTT---KGSVLVYNVME------LH-SHCEIDA  177 (342)
Q Consensus       115 -----i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~g~i~iwd~~~------~~-~~~~~~~  177 (342)
                           |++|++.+++..  ..+....++.....+.++|++.+|++.....   +..|.+||+.+      +. ....+..
T Consensus       205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~  284 (710)
T 2xdw_A          205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (710)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence                 999999887532  2223333344466778888998888764211   56899999986      43 4566777


Q ss_pred             ccCCeeEEEECCCCCEEEEEeCCCc---EEEEEEcCCCe--eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc--
Q 019349          178 HQAPLAAIVLSSNGMYIATASEQGT---IIRVFLVSEAT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS--  250 (342)
Q Consensus       178 h~~~v~~i~~s~dg~~lat~s~dg~---~irlwd~~~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~--  250 (342)
                      |...+.. .|+|+|+.|+..+.++.   -|.+||+.+++  ....+..+.....+.+++|++++.   ++++...++.  
T Consensus       285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---lv~~~~~~g~~~  360 (710)
T 2xdw_A          285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF---LVLCYLHDVKNT  360 (710)
T ss_dssp             SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTE---EEEEEEETTEEE
T ss_pred             CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCE---EEEEEEECCEEE
Confidence            7776665 48899998887776432   24689998764  123343332223588899997777   8888888885  


Q ss_pred             EEEEecCCC
Q 019349          251 LHVFSPGFA  259 (342)
Q Consensus       251 i~vwd~~~~  259 (342)
                      |++|++.++
T Consensus       361 l~~~~~~~g  369 (710)
T 2xdw_A          361 LQLHDLATG  369 (710)
T ss_dssp             EEEEETTTC
T ss_pred             EEEEECCCC
Confidence            555666444

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.39  E-value=4.4e-10  Score=110.72  Aligned_cols=241  Identities=10%  Similarity=-0.014  Sum_probs=151.4

Q ss_pred             CeEEEEEcCCCCEEEEEcCC------cEEEEeCCCCcEEEEEeeCCE--EEEEEcCCCCeEEEEcCCCCC-------CCC
Q 019349            9 PVFFVSFNQDNSGFALSTKD------GFKIFDSSTGRLCYERAVGAF--SIVEMLYSSSLLAIVGAGEQP-------SLS   73 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~------g~~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~-------~~~   73 (342)
                      .+..++|||||++||.+.++      .+++||+++++.+.. .....  ..+.|.++ +.+++.+.....       ...
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence            57889999999999876543      379999999976543 11122  34567788 888877642110       001


Q ss_pred             CCeEEEEECCCCcE--EEEEecC---CceEEEEEcCCe--EEEEE-CC-----eEEEEECCCC--ceeeEEeCCCCCceE
Q 019349           74 PRRLCLFNTTTGTA--LRELNFL---TSILAVRLNKKR--LVIVL-RE-----KTYIYDANTL--AILDTIDTVPNLKGL  138 (342)
Q Consensus        74 d~~i~iwd~~~~~~--~~~~~~~---~~v~~i~~~~~~--~~~~~-d~-----~i~i~d~~~~--~~~~~~~~~~~~~~~  138 (342)
                      ...|.+|++.+++.  ...+..+   ..+..+.+++++  +++.. ++     .|++||+.++  +....+..+.... .
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~-~  320 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQ-W  320 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSC-E
T ss_pred             CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCce-E
Confidence            34699999987762  2233322   247889999986  33333 32     8999999876  3144554433322 2


Q ss_pred             EEEeeCCCccEEEEeCCC--CccEEEEEEccCC--ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC-CCe
Q 019349          139 CAFSPSLNACFLAVPAST--TKGSVLVYNVMEL--HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS-EAT  213 (342)
Q Consensus       139 ~~~~~~~~~~~l~~~~~~--~~g~i~iwd~~~~--~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~-~~~  213 (342)
                      ..+.  +++..|++.+..  .++.|.+||+.++  +....+..+...+..++++ ++.++++...||. .+||.+. +++
T Consensus       321 ~~~~--~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~-~~l~~~~~~g~  396 (741)
T 1yr2_A          321 DFVD--GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAK-SQVLAFDLDGK  396 (741)
T ss_dssp             EEEE--EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTE-EEEEEEETTSC
T ss_pred             EEEe--ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCE-EEEEEEeCCCC
Confidence            2233  344455544321  2567999999875  3344445566667788887 6678888888886 4677554 466


Q ss_pred             eEEEeccCcCceeEEEEEEecCCCcccEEE-EEe---CCCcEEEEecCCCC
Q 019349          214 KSYSFRRGTYPSTIFSLSFGQSMQFQDILV-ATS---SSGSLHVFSPGFAI  260 (342)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~-~~s---~dg~i~vwd~~~~~  260 (342)
                      .+..+... ....+..++++||+.   .|+ +.+   ..++|++||+.+++
T Consensus       397 ~~~~l~~~-~~~~v~~~~~s~d~~---~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          397 PAGAVSLP-GIGSASGLSGRPGDR---HAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEECBCS-SSCEEEEEECCBTCS---CEEEEEEETTEEEEEEEEETTTTE
T ss_pred             ceeeccCC-CCeEEEEeecCCCCC---EEEEEEcCCCCCCEEEEEECCCCc
Confidence            55655421 245688899999987   455 333   23689999997654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.38  E-value=1e-09  Score=100.35  Aligned_cols=237  Identities=8%  Similarity=0.031  Sum_probs=149.3

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349            8 YPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      ....+|+|+++++++++...+ .+++||.+++++...........+.+..+.+.++++...     ....|.++|...+.
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~~ia~~~~g~~l~~~d~~-----~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGGKPAVTKDKQRVYSIGWE-----GTHTVYVYMKASGW  205 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBCBCEECTTSSEEEEEBSS-----TTCEEEEEEGGGTT
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCCceeEecCCCcEEEEecC-----CCceEEEEEcCCCc
Confidence            467899999999976666654 479999988866544332222226677777776666542     12289999987665


Q ss_pred             EEEEE----e-cCCceEEEEEcC-CeEEEEE--CCeEEEEECCCCceeeEEe---CCCC-CceEE-EEeeCCCccEEEEe
Q 019349           87 ALREL----N-FLTSILAVRLNK-KRLVIVL--REKTYIYDANTLAILDTID---TVPN-LKGLC-AFSPSLNACFLAVP  153 (342)
Q Consensus        87 ~~~~~----~-~~~~v~~i~~~~-~~~~~~~--d~~i~i~d~~~~~~~~~~~---~~~~-~~~~~-~~~~~~~~~~l~~~  153 (342)
                      ....+    . ....+.++++++ +..+.+.  ++.|+.||..++... .+.   .... ..... .++.+|++..|..+
T Consensus       206 ~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~-~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~  284 (409)
T 3hrp_A          206 APTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVT-LIKQLELSGSLGTNPGPYLIYYFVDSNFYMS  284 (409)
T ss_dssp             CEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEE-EEEECCCCSCCCCSSCCEEEEETTTTEEEEE
T ss_pred             eeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEE-EEecccccCCCCCCccccEEEeCCCCEEEEE
Confidence            54444    2 234677889988 4444445  468999999876532 220   1111 11101 45555632333334


Q ss_pred             CCCCccEEEEEEccCCceeEEEeccc---------------CCeeEEEECCCCCEEEEEe-CCCcEEEEEEcCCCeeEEE
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQ---------------APLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATKSYS  217 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~---------------~~v~~i~~s~dg~~lat~s-~dg~~irlwd~~~~~~~~~  217 (342)
                      .. .++.|+.||....  +..+.++.               .....|+++|+|+++++-+ .+++ |+.||+.+|+....
T Consensus       285 d~-~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~-I~~~~~~~G~v~~~  360 (409)
T 3hrp_A          285 DQ-NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYC-LRKLDILDGYVSTV  360 (409)
T ss_dssp             ET-TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCE-EEEEETTTTEEEEE
T ss_pred             eC-CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCE-EEEEECCCCEEEEE
Confidence            33 5789999987643  33333332               3478999999999777766 5665 68999888864322


Q ss_pred             eccCc------------CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          218 FRRGT------------YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       218 ~~~~~------------~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      .....            .-.....|++++++.   ++++-..++.|+.++++
T Consensus       361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~---lyVad~~n~~Ir~i~~e  409 (409)
T 3hrp_A          361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGG---YWIAEAWGKAIRKYAVE  409 (409)
T ss_dssp             EECTTCBSCCCBSTTTCCBSSEEEEEECSSSE---EEEEESTTCEEEEEEEC
T ss_pred             eCCCCCCCcCCCChhceEeCCceEEEEcCCCC---EEEEECCCCeEEEEEeC
Confidence            21100            012478999999987   88888888999988764

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.37  E-value=4.8e-10  Score=97.66  Aligned_cols=191  Identities=9%  Similarity=0.020  Sum_probs=122.8

Q ss_pred             EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEec-CCceEEEEEcCCeE-EEEE--CCeEEEEECCCCc
Q 019349           49 FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKRL-VIVL--REKTYIYDANTLA  124 (342)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~-~~~~--d~~i~i~d~~~~~  124 (342)
                      ...+.+..+++.+++++.      .++.|..||..++  ...+.. ...+.+++++++.. +++.  ++.|.+||..+++
T Consensus        30 ~eg~~~d~~g~~l~~~~~------~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~  101 (296)
T 3e5z_A           30 TEGPVYVPARSAVIFSDV------RQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE  101 (296)
T ss_dssp             EEEEEEEGGGTEEEEEEG------GGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC
T ss_pred             ccCCeEeCCCCEEEEEeC------CCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc
Confidence            344566666774555554      3789999999887  444443 34689999988764 4444  4689999998876


Q ss_pred             eeeEEeCCCC--CceEEEEeeCCCccEEEEeCC---------------CCccEEEEEEccCCceeEEEecccCCeeEEEE
Q 019349          125 ILDTIDTVPN--LKGLCAFSPSLNACFLAVPAS---------------TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVL  187 (342)
Q Consensus       125 ~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~---------------~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~  187 (342)
                      ..........  ......++.++++.++++...               ...+.|..+|.. ++ +..+..+....+.++|
T Consensus       102 ~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~-~~~~~~~~~~~~gi~~  179 (296)
T 3e5z_A          102 WESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GT-LSAPIRDRVKPNGLAF  179 (296)
T ss_dssp             EEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SC-EEEEECCCSSEEEEEE
T ss_pred             EEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CC-EEEeecCCCCCccEEE
Confidence            5433221111  112234566777877775320               012456666654 33 4445566677899999


Q ss_pred             CCCCCEEEEEeCCCcEEEEEEcC-CCee---EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          188 SSNGMYIATASEQGTIIRVFLVS-EATK---SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       188 s~dg~~lat~s~dg~~irlwd~~-~~~~---~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +|||+.|++.+.+++ |++||+. +|+.   ...+ . .....+.+|++++++.   ++++.  ++.|.+||.+
T Consensus       180 s~dg~~lv~~~~~~~-i~~~~~~~~g~~~~~~~~~-~-~~~~~p~~i~~d~~G~---l~v~~--~~~v~~~~~~  245 (296)
T 3e5z_A          180 LPSGNLLVSDTGDNA-THRYCLNARGETEYQGVHF-T-VEPGKTDGLRVDAGGL---IWASA--GDGVHVLTPD  245 (296)
T ss_dssp             CTTSCEEEEETTTTE-EEEEEECSSSCEEEEEEEE-C-CSSSCCCSEEEBTTSC---EEEEE--TTEEEEECTT
T ss_pred             CCCCCEEEEeCCCCe-EEEEEECCCCcCcCCCeEe-e-CCCCCCCeEEECCCCC---EEEEc--CCeEEEECCC
Confidence            999999977777776 5799997 5554   2333 2 1233467899999998   66555  7899999975

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.35  E-value=2.2e-08  Score=86.60  Aligned_cols=232  Identities=9%  Similarity=0.025  Sum_probs=149.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcC-CcEEEEeCCCCcEEEE-Eee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTK-DGFKIFDSSTGRLCYE-RAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~-~g~~v~d~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      .....+.+++++++|+..++... +++.+||.. ++.... ...  .....+.+..+.+.. ++..      .++.|..+
T Consensus        17 ~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~------~~~~v~~~   88 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIW-FTEN------GANKIGKL   88 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEE-EEET------TTTEEEEE
T ss_pred             CCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEE-EEec------CCCeEEEE
Confidence            34568899999999997776654 568999988 654432 111  234444454444433 3332      25789999


Q ss_pred             ECCCCcEEEEEec---CCceEEEEEcCCe-EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           81 NTTTGTALRELNF---LTSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        81 d~~~~~~~~~~~~---~~~v~~i~~~~~~-~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      |.. ++. ..+..   ...+.++++.++. ++++.  ++.|..||.. ++.. .+...........++.++++.+.++..
T Consensus        89 d~~-g~~-~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~  164 (300)
T 2qc5_A           89 SKK-GGF-TEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIY-EYDLPNKGSYPAFITLGSDNALWFTEN  164 (300)
T ss_dssp             CTT-SCE-EEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEE-EEECSSTTCCEEEEEECTTSSEEEEET
T ss_pred             CCC-CCe-EEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEE-EccCCCCCCCceeEEECCCCCEEEEec
Confidence            987 554 33333   2468889998654 55555  5689999987 5443 332222233456677777777655543


Q ss_pred             CCCccEEEEEEccCCceeE-EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe
Q 019349          155 STTKGSVLVYNVMELHSHC-EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~-~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs  233 (342)
                        .++.|..+|. +++... ....+...+..|+++++|++.++....+. |.+||. +++... +........+.+++++
T Consensus       165 --~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d  238 (300)
T 2qc5_A          165 --QNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNK-IGRITT-TGEISE-YDIPTPNARPHAITAG  238 (300)
T ss_dssp             --TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTE-EEEECT-TCCEEE-EECSSTTCCEEEEEEC
T ss_pred             --CCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCE-EEEEcC-CCcEEE-EECCCCCCCceEEEEC
Confidence              3678999998 554432 12234557899999999987777665665 468998 555433 2111123457899999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecC
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +++.   ++++...++.|..|+..
T Consensus       239 ~~g~---l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          239 KNSE---IWFTEWGANQIGRITND  259 (300)
T ss_dssp             STTC---EEEEETTTTEEEEECTT
T ss_pred             CCCC---EEEeccCCCeEEEECCC
Confidence            9998   77777677999999873

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.34  E-value=2.5e-08  Score=86.25  Aligned_cols=232  Identities=9%  Similarity=-0.032  Sum_probs=145.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-CcEEEEeCCCCcEE-EEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTK-DGFKIFDSSTGRLC-YERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~-~g~~v~d~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      ....+.+++++++|...++... .++..||.+ ++.. +...  ......+.+..++. +.++..      .++.|..||
T Consensus        55 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~------~~~~i~~~d  126 (299)
T 2z2n_A           55 PDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGD-IWFTEM------NGNRIGRIT  126 (299)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSC-EEEEET------TTTEEEEEC
T ss_pred             ccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCC-EEEEec------CCceEEEEC
Confidence            3467899999999997777664 457889976 4432 2211  12333444444443 333332      267899999


Q ss_pred             CCCCcEEEEEe--cCCceEEEEEcCCe-EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           82 TTTGTALRELN--FLTSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        82 ~~~~~~~~~~~--~~~~v~~i~~~~~~-~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      . +++......  ....+.+++++++. ++++.  ++.|..||. +++... +...........++.++++.+.++..  
T Consensus       127 ~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~~~~g~l~v~~~--  201 (299)
T 2z2n_A          127 D-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITE-FKIPTPASGPVGITKGNDDALWFVEI--  201 (299)
T ss_dssp             T-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEET--
T ss_pred             C-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE-eeCCCCCCcceeEEECCCCCEEEEcc--
Confidence            8 555432221  12468899998764 55555  468999998 665443 32222233456677777777666554  


Q ss_pred             CccEEEEEEccCCceeEE-EecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC
Q 019349          157 TKGSVLVYNVMELHSHCE-IDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  235 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~-~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d  235 (342)
                      .++.|.+||. +++.... +..+...+.+|+++++|++.++...++. |..||. +++. ..+........+.++++ ++
T Consensus       202 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~-i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~  276 (299)
T 2z2n_A          202 IGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANK-IGRLTS-NNII-EEYPIQIKSAEPHGICF-DG  276 (299)
T ss_dssp             TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEEET-TTEE-EEEECSSSSCCEEEEEE-CS
T ss_pred             CCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCce-EEEECC-CCce-EEEeCCCCCCccceEEe-cC
Confidence            3688999998 6653322 3345567899999999997777656666 468998 5543 33322122345889999 88


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCC
Q 019349          236 MQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       236 ~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      +.   ++++.+ .+.|..++.++.
T Consensus       277 g~---l~v~~~-~~~l~~~~~~~~  296 (299)
T 2z2n_A          277 ET---IWFAME-CDKIGKLTLIKD  296 (299)
T ss_dssp             SC---EEEEET-TTEEEEEEEC--
T ss_pred             CC---EEEEec-CCcEEEEEcCcc
Confidence            87   555544 677888887653

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.31  E-value=3.7e-09  Score=92.27  Aligned_cols=219  Identities=10%  Similarity=0.036  Sum_probs=139.1

Q ss_pred             eEEEEEcCCCCEE-EEEcCC-cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349           10 VFFVSFNQDNSGF-ALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (342)
Q Consensus        10 V~~l~fs~d~~~l-a~g~~~-g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~   87 (342)
                      ..+..|++++..| .+...+ .+..||..+++.........+..+.+..++++ ++..        ++.|.+||..+++.
T Consensus        15 ~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~i~~~~dG~l-~v~~--------~~~l~~~d~~~g~~   85 (297)
T 3g4e_A           15 GESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVSSVALRQSGGY-VATI--------GTKFCALNWKEQSA   85 (297)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEEEEEEBTTSSE-EEEE--------TTEEEEEETTTTEE
T ss_pred             ccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceEEEEECCCCCE-EEEE--------CCeEEEEECCCCcE
Confidence            4578899966554 555444 47899998876643333456666777777773 3332        45899999988765


Q ss_pred             EEEEecC-----CceEEEEEcCCeEEEEEC------------CeEEEEECCC-CceeeEEeCCCCCceEEEEeeCCCccE
Q 019349           88 LRELNFL-----TSILAVRLNKKRLVIVLR------------EKTYIYDANT-LAILDTIDTVPNLKGLCAFSPSLNACF  149 (342)
Q Consensus        88 ~~~~~~~-----~~v~~i~~~~~~~~~~~d------------~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
                      .......     ..+.++.++++..+.+++            ....+|.+.. ++.......   ......++++|++..
T Consensus        86 ~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---~~~pngi~~spdg~~  162 (297)
T 3g4e_A           86 VVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ---VDISNGLDWSLDHKI  162 (297)
T ss_dssp             EEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE---ESBEEEEEECTTSCE
T ss_pred             EEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec---cccccceEEcCCCCE
Confidence            4333221     247889998875444431            2345555542 333222211   112345667777776


Q ss_pred             EEEeCCCCccEEEEEEc--cCCce-----eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc
Q 019349          150 LAVPASTTKGSVLVYNV--MELHS-----HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT  222 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~--~~~~~-----~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~  222 (342)
                      +..+.. .++.|.+||+  .++..     +..+..+......|+++++|++.++....++ |..||..+|+.+..+... 
T Consensus       163 lyv~~~-~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~-v~~~d~~tG~~~~~i~~p-  239 (297)
T 3g4e_A          163 FYYIDS-LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGR-VIRLDPVTGKRLQTVKLP-  239 (297)
T ss_dssp             EEEEEG-GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTE-EEEECTTTCCEEEEEECS-
T ss_pred             EEEecC-CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCE-EEEEcCCCceEEEEEECC-
Confidence            655543 4789999997  44432     2223334466889999999998888777776 469999989988877543 


Q ss_pred             CceeEEEEEEe-cCCCcccEEEEEeC
Q 019349          223 YPSTIFSLSFG-QSMQFQDILVATSS  247 (342)
Q Consensus       223 ~~~~v~~l~fs-~d~~~~~~l~~~s~  247 (342)
                       ...+++++|. ||++   .|.+++.
T Consensus       240 -~~~~t~~~f~g~d~~---~L~vt~~  261 (297)
T 3g4e_A          240 -VDKTTSCCFGGKNYS---EMYVTCA  261 (297)
T ss_dssp             -SSBEEEEEEESGGGC---EEEEEEB
T ss_pred             -CCCceEEEEeCCCCC---EEEEEcC
Confidence             2358999998 8877   6665554

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.31  E-value=2.5e-10  Score=102.90  Aligned_cols=170  Identities=12%  Similarity=0.137  Sum_probs=125.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCc-----------EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR-----------LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (342)
                      ..+++.+++++...+|++|+.+++++|+++..+           .........+..+.+  +.+.++++ .       ++
T Consensus        37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~V~~l~f--d~~~L~v~-~-------~~  106 (388)
T 1xip_A           37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVS-T-------RN  106 (388)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEE-E-------SS
T ss_pred             cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCCeeEEEE--CCCEEEEE-c-------CC
Confidence            347999999999999999999999999864332           111112233666666  77777776 3       57


Q ss_pred             eEEEEECCCCcEEEEE-ecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           76 RLCLFNTTTGTALREL-NFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        76 ~i~iwd~~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      .|++||+.+....... .+...+.++.+.+..++++. ||.+.+||+.+++... +     ...+.+++++|++  ++.+
T Consensus       107 ~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p~~av~~~dG~L~v~dl~~~~~~~-~-----~~~Vs~v~WSpkG--~~vg  178 (388)
T 1xip_A          107 ALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKSTKQ-L-----AQNVTSFDVTNSQ--LAVL  178 (388)
T ss_dssp             EEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEE-E-----EESEEEEEECSSE--EEEE
T ss_pred             cEEEEEchhhhccCccceeecceeeEEecCCCEEEEECCCCEEEEEccCCcccc-c-----cCCceEEEEcCCc--eEEE
Confidence            9999998776544333 34557888887666666666 8999999999887643 2     1358899999998  3444


Q ss_pred             CCCCccEEEEEEccCCce--eEEE------e---cccCCeeEEEECCCCCEEEE
Q 019349          154 ASTTKGSVLVYNVMELHS--HCEI------D---AHQAPLAAIVLSSNGMYIAT  196 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~--~~~~------~---~h~~~v~~i~~s~dg~~lat  196 (342)
                      .  .||.+++|+....+.  ..++      .   +|...|.+|.|.+++.+|++
T Consensus       179 ~--~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          179 L--KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             E--TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             E--cCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            4  579999999887775  5566      2   37889999999999999887

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.31  E-value=8.5e-10  Score=94.40  Aligned_cols=220  Identities=7%  Similarity=-0.020  Sum_probs=133.8

Q ss_pred             CCeEEEEECCCCcEEEEE-ecCCceEEEEEcCCe-EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349           74 PRRLCLFNTTTGTALREL-NFLTSILAVRLNKKR-LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~-~~~~~v~~i~~~~~~-~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                      ++.|.+||..++...... .....+.+++++++. ++++. ++.|++||...... ..+.. ........++.++++.++
T Consensus        45 ~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~i~~~d~~~~~~-~~~~~-~~~~~p~~i~~~~~g~l~  122 (270)
T 1rwi_B           45 YGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQ-TVLPF-DGLNYPEGLAVDTQGAVY  122 (270)
T ss_dssp             SCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCC-EECCC-CSCSSEEEEEECTTCCEE
T ss_pred             CCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcCCCEEEEEeCCCceE-eeeec-CCcCCCcceEECCCCCEE
Confidence            688999997655432211 112367788898764 55555 67999999876533 22221 112345667777777766


Q ss_pred             EEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEE
Q 019349          151 AVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSL  230 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l  230 (342)
                      ++..  .++.|.+||..+.........+...+..|+++++|+++++...++. |.+||...+........  ....+.+|
T Consensus       123 v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~-i~~~~~~~~~~~~~~~~--~~~~p~~i  197 (270)
T 1rwi_B          123 VADR--GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNR-VVKLEAESNNQVVLPFT--DITAPWGI  197 (270)
T ss_dssp             EEEG--GGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTE-EEEECTTTCCEEECCCS--SCCSEEEE
T ss_pred             EEEC--CCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCE-EEEEecCCCceEeeccc--CCCCceEE
Confidence            6544  4688999986655443322233446789999999997777766666 57999876654332211  12457899


Q ss_pred             EEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe
Q 019349          231 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY  310 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (342)
                      ++++++.   ++++...++.|.+|+.+.......           ....   ...|       ..+.+.++++.+++...
T Consensus       198 ~~d~~g~---l~v~~~~~~~v~~~~~~~~~~~~~-----------~~~~---~~~p-------~~i~~~~~g~l~v~~~~  253 (270)
T 1rwi_B          198 AVDEAGT---VYVTEHNTNQVVKLLAGSTTSTVL-----------PFTG---LNTP-------LAVAVDSDRTVYVADRG  253 (270)
T ss_dssp             EECTTCC---EEEEETTTSCEEEECTTCSCCEEC-----------CCCS---CSCE-------EEEEECTTCCEEEEEGG
T ss_pred             EECCCCC---EEEEECCCCcEEEEcCCCCcceee-----------ccCC---CCCc-------eeEEECCCCCEEEEECC
Confidence            9999998   788888889999999765432110           0000   0001       12233444465666667


Q ss_pred             CCcEEEEEEecCCC
Q 019349          311 NGYFVEYIFSINNC  324 (342)
Q Consensus       311 dg~v~~~~~~~~~~  324 (342)
                      ++.|++|+++.++.
T Consensus       254 ~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          254 NDRVVKLTSLEHHH  267 (270)
T ss_dssp             GTEEEEECCCGGGS
T ss_pred             CCEEEEEcCCCccc
Confidence            99999998776543

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.31  E-value=1.5e-08  Score=91.42  Aligned_cols=273  Identities=10%  Similarity=0.002  Sum_probs=165.1

Q ss_pred             EEcCCCCEEEEEcC--C----cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCC---CCCCCeEEEEECCC
Q 019349           14 SFNQDNSGFALSTK--D----GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQP---SLSPRRLCLFNTTT   84 (342)
Q Consensus        14 ~fs~d~~~la~g~~--~----g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~d~~i~iwd~~~   84 (342)
                      ...|++.++.+...  .    .+.+||..+++++.....+....+.+.++++.+.++......   ...++.|.+||..+
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t  106 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVT  106 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCCCeEECCCCCEEEEEeccccccccCCCCCeEEEEECCC
Confidence            45688887766543  2    458999999987765544433366777888888776421000   01257899999999


Q ss_pred             CcEEEEEecC--------CceEEEEEcCC--eEEEEE---CCeEEEEECCCCceeeE-EeCCCCCceEEEEeeCCCccEE
Q 019349           85 GTALRELNFL--------TSILAVRLNKK--RLVIVL---REKTYIYDANTLAILDT-IDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        85 ~~~~~~~~~~--------~~v~~i~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                      .+.+.++...        .....+.++++  .++++.   ++.|.++| .+++.+.. +....    ...+.+.+...++
T Consensus       107 ~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~  181 (373)
T 2mad_H          107 FLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFY  181 (373)
T ss_pred             CcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEE
Confidence            9988887654        23457788776  455554   36899999 99988877 65422    1333444443344


Q ss_pred             EEeCCCCccEEEEEEccCCceeEEEe-----cccCCe-eEEEECCCCCEEEEEeCCCcEEEEEEcCCCe--eEEEecc--
Q 019349          151 AVPASTTKGSVLVYNVMELHSHCEID-----AHQAPL-AAIVLSSNGMYIATASEQGTIIRVFLVSEAT--KSYSFRR--  220 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~~~~~~~~~-----~h~~~v-~~i~~s~dg~~lat~s~dg~~irlwd~~~~~--~~~~~~~--  220 (342)
                      +.+   .||.+.++|. +++.+....     ....++ ....+.+++..++..+..+.+ .+.|+.++.  .+..+..  
T Consensus       182 ~~~---~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v-~vid~~~~~~~v~~~~~~~~  256 (373)
T 2mad_H          182 LLC---AQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKI-LQADISAAGATNKAPIDALS  256 (373)
T ss_pred             EEc---CCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceE-EEEeccCCcceEeeeeeecC
Confidence            333   4799999999 877663322     112222 234567776655554566764 689987553  2222211  


Q ss_pred             ------CcCceeEEEEEEecCCCcccEEEEEeC----------CCcEEEEecCCCCCCCCCCCccccccccccccccccc
Q 019349          221 ------GTYPSTIFSLSFGQSMQFQDILVATSS----------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVL  284 (342)
Q Consensus       221 ------~~~~~~v~~l~fs~d~~~~~~l~~~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (342)
                            +..+.....++|+||++   .|.++..          .+.|.++|+++.+..++..     ++.   ......|
T Consensus       257 ~~~~~~~~~p~g~~~~~~s~d~~---~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~-----~g~---~p~~i~~  325 (373)
T 2mad_H          257 GGRKADTWRPGGWQQVAYLKSSD---GIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-----LGH---DVDAISV  325 (373)
T ss_pred             CcccccceecCceEeEEECCCCC---EEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEE-----CCC---CcCeEEE
Confidence                  00122244578999988   6766543          3579999998776533210     000   0112233


Q ss_pred             cccccceeeeccCCCcccc-EEEEEE-eCCcEEEEEEec
Q 019349          285 DPADHHVLRNAFPAGVKRA-SVSVIT-YNGYFVEYIFSI  321 (342)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~~-~l~~~~-~dg~v~~~~~~~  321 (342)
                      +              ++++ .++++. .++.|.+|+...
T Consensus       326 s--------------~Dg~~~l~v~~~~~~~V~ViD~~t  350 (373)
T 2mad_H          326 A--------------QDGGPDLYALSAGTEVLHIYDAGA  350 (373)
T ss_pred             C--------------CCCCeEEEEEcCCCCeEEEEECCC
Confidence            3              4446 677777 489999987654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.29  E-value=3.1e-10  Score=102.27  Aligned_cols=174  Identities=10%  Similarity=0.133  Sum_probs=122.1

Q ss_pred             CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc-----------EEEEEecCCceEEEEEcCCeEEEEECCeEE
Q 019349           48 AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT-----------ALRELNFLTSILAVRLNKKRLVIVLREKTY  116 (342)
Q Consensus        48 ~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~-----------~~~~~~~~~~v~~i~~~~~~~~~~~d~~i~  116 (342)
                      .+..+++......++.++.        ..+++|+++..+           ....+..+. |..++|+...++++.++.|+
T Consensus        39 ~~nlLais~~~gll~a~~~--------~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~fd~~~L~v~~~~~l~  109 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASG--------SKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCFHGDQVLVSTRNALY  109 (388)
T ss_dssp             CCBCEEEETTTTEEEEEET--------TEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEEETTEEEEEESSEEE
T ss_pred             cccEEEEcCCCCEEEEeCC--------CEEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEECCCEEEEEcCCcEE
Confidence            4566677666666655543        578889965332           224556677 99999966677777788999


Q ss_pred             EEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEE
Q 019349          117 IYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIAT  196 (342)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat  196 (342)
                      +||+.+.........+..  .+..+.+.+..  +|+..  .||.|.+||+.++....    +...|+|++|||+|  ++.
T Consensus       110 v~dv~sl~~~~~~~~~~~--~v~~i~~~~p~--~av~~--~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSpkG--~~v  177 (388)
T 1xip_A          110 SLDLEELSEFRTVTSFEK--PVFQLKNVNNT--LVILN--SVNDLSALDLRTKSTKQ----LAQNVTSFDVTNSQ--LAV  177 (388)
T ss_dssp             EEESSSTTCEEEEEECSS--CEEEEEECSSE--EEEEE--TTSEEEEEETTTCCEEE----EEESEEEEEECSSE--EEE
T ss_pred             EEEchhhhccCccceeec--ceeeEEecCCC--EEEEE--CCCCEEEEEccCCcccc----ccCCceEEEEcCCc--eEE
Confidence            999987754444433332  34555554443  55555  58999999999877643    45689999999999  788


Q ss_pred             EeCCCcEEEEEEcCCCee--EEEecc----C---cCceeEEEEEEecCCCcccEEEEEe
Q 019349          197 ASEQGTIIRVFLVSEATK--SYSFRR----G---TYPSTIFSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       197 ~s~dg~~irlwd~~~~~~--~~~~~~----~---~~~~~v~~l~fs~d~~~~~~l~~~s  246 (342)
                      |..||++ ++|+...++.  ..++..    +   .+...|.+|.|.+++.   +|++-+
T Consensus       178 g~~dg~i-~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~---flv~y~  232 (388)
T 1xip_A          178 LLKDRSF-QSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQD---FLAVFG  232 (388)
T ss_dssp             EETTSCE-EEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSE---EEEEEE
T ss_pred             EEcCCcE-EEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCe---EEEEEc
Confidence            9999985 8999887774  555622    1   1346799999999998   777743

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.29  E-value=1.6e-09  Score=105.92  Aligned_cols=245  Identities=9%  Similarity=0.042  Sum_probs=149.9

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-----C-cEEEEeCCCCcEEEEEeeCC-EEEEEEcCCCCeEEEEcCCCCC------CC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTK-----D-GFKIFDSSTGRLCYERAVGA-FSIVEMLYSSSLLAIVGAGEQP------SL   72 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~-----~-g~~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~------~~   72 (342)
                      +...+..++|||||++||-+.+     . .+++||+++++.+....... ...+.|. +++.++++......      ..
T Consensus       127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~  205 (693)
T 3iuj_A          127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFSGISWL-GNEGFFYSSYDKPDGSELSART  205 (693)
T ss_dssp             SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEE-TTTEEEEEESSCCC-------C
T ss_pred             CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceeccEEEe-CCCEEEEEEecCcccccccccC
Confidence            3346888999999999885432     1 26899999998654321111 2345677 88888877653110      01


Q ss_pred             CCCeEEEEECCCCcE--EEEEec----CCceEEEEEcCCeEE--EEE-----CCeEEEEECCCCc-eeeEEeCCCCCceE
Q 019349           73 SPRRLCLFNTTTGTA--LRELNF----LTSILAVRLNKKRLV--IVL-----REKTYIYDANTLA-ILDTIDTVPNLKGL  138 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~--~~~~~~----~~~v~~i~~~~~~~~--~~~-----d~~i~i~d~~~~~-~~~~~~~~~~~~~~  138 (342)
                      ....|.+|++.++..  ...+..    +....++.+++++..  +..     .+.|+++|+.++. ....+..+.... .
T Consensus       206 ~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~-~  284 (693)
T 3iuj_A          206 DQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD-V  284 (693)
T ss_dssp             CCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC-E
T ss_pred             CCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce-E
Confidence            245699999987653  222222    224678888887533  322     2489999998763 344454433322 2


Q ss_pred             EEEeeCCCccEEEEeCCC-CccEEEEEEccCCce--eEEEecccCCeeEEEECCCCCEEEEEeCCCc--EEEEEEcCCCe
Q 019349          139 CAFSPSLNACFLAVPAST-TKGSVLVYNVMELHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQGT--IIRVFLVSEAT  213 (342)
Q Consensus       139 ~~~~~~~~~~~l~~~~~~-~~g~i~iwd~~~~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~--~irlwd~~~~~  213 (342)
                      ..+++.++ .+++....+ ..+.|..+|+.++..  ...+..|...+.  .|++++++|+....++.  .|++||+..+ 
T Consensus       285 ~~~~~~g~-~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-  360 (693)
T 3iuj_A          285 SLVDNKGS-TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-  360 (693)
T ss_dssp             EEEEEETT-EEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred             EEEeccCC-EEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence            22444333 333333321 247899999987654  345666666655  89999998887765541  2578998744 


Q ss_pred             eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC----CcEEEEecCCCC
Q 019349          214 KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS----GSLHVFSPGFAI  260 (342)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d----g~i~vwd~~~~~  260 (342)
                      ....+... ....+..++++|++.   .|+....+    ++|+.||+++++
T Consensus       361 ~~~~l~~p-~~~~~~~~~~~~d~~---~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          361 RVREVALP-GLGSVSGFNGKHDDP---ALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEECCS-SSSEEEECCCCTTCS---CEEEEEECSSSCCEEEEECTTTCC
T ss_pred             eeEEeecC-CCceEEeeecCCCCC---EEEEEecCCCCCCEEEEEECCCCe
Confidence            44444322 234577788888887   55555444    789999987654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.26  E-value=1.5e-09  Score=106.16  Aligned_cols=232  Identities=7%  Similarity=-0.017  Sum_probs=139.1

Q ss_pred             cCCCCEEEEEcC-Cc---EEEEe--CCCCc--EEEEEe----eC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349           16 NQDNSGFALSTK-DG---FKIFD--SSTGR--LCYERA----VG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus        16 s~d~~~la~g~~-~g---~~v~d--~~~~~--~~~~~~----~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      +|+|++++-... .+   ..+|.  ...++  .+....    .+  .+....+.++++.+++.....  ...+.+|++||
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~--G~~~~~i~v~d  153 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPN--AADEAVLHVID  153 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEET--TCSCCEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCC--CCceEEEEEEE
Confidence            478988775433 32   35664  33442  222211    11  355667888888888664210  02357999999


Q ss_pred             CCCCcEE-EEEecCCceEEEEEcCCe--EEEEE-CCe-------------EEEEECCCCcee--eEEeCCCCCceEEEEe
Q 019349           82 TTTGTAL-RELNFLTSILAVRLNKKR--LVIVL-REK-------------TYIYDANTLAIL--DTIDTVPNLKGLCAFS  142 (342)
Q Consensus        82 ~~~~~~~-~~~~~~~~v~~i~~~~~~--~~~~~-d~~-------------i~i~d~~~~~~~--~~~~~~~~~~~~~~~~  142 (342)
                      +.+++.+ ...........+.|+++.  ++... +..             |++|++.+++..  ..+....+......+.
T Consensus       154 l~tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~  233 (695)
T 2bkl_A          154 VDSGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSD  233 (695)
T ss_dssp             TTTCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEE
T ss_pred             CCCCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEE
Confidence            9998865 211111122678898874  44444 443             999999887632  2223333334566778


Q ss_pred             eCCCccEEEEeCCCC--ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC----CCcEEEEEEcCCCee--
Q 019349          143 PSLNACFLAVPASTT--KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE----QGTIIRVFLVSEATK--  214 (342)
Q Consensus       143 ~~~~~~~l~~~~~~~--~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~----dg~~irlwd~~~~~~--  214 (342)
                      ++|++.+|++...+.  ...|.+||..+++ ...+..+...+....+ ++|. |+..+.    +++ |.+||+.+++.  
T Consensus       234 ~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~-l~~~d~~~~~~~~  309 (695)
T 2bkl_A          234 LSRDGKYLFVYILRGWSENDVYWKRPGEKD-FRLLVKGVGAKYEVHA-WKDR-FYVLTDEGAPRQR-VFEVDPAKPARAS  309 (695)
T ss_dssp             ECTTSCCEEEEEEETTTEEEEEEECTTCSS-CEEEEECSSCCEEEEE-ETTE-EEEEECTTCTTCE-EEEEBTTBCSGGG
T ss_pred             ECCCCCEEEEEEeCCCCceEEEEEcCCCCc-eEEeecCCCceEEEEe-cCCc-EEEEECCCCCCCE-EEEEeCCCCCccC
Confidence            889998888766311  2367777665554 4455556666666666 5666 444443    455 46999987652  


Q ss_pred             EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          215 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      ...+..+.....+.+++|+ ++.   ++++...|+..+||.++
T Consensus       310 ~~~l~~~~~~~~l~~~~~~-~~~---lv~~~~~dg~~~l~~~~  348 (695)
T 2bkl_A          310 WKEIVPEDSSASLLSVSIV-GGH---LSLEYLKDATSEVRVAT  348 (695)
T ss_dssp             CEEEECCCSSCEEEEEEEE-TTE---EEEEEEETTEEEEEEEE
T ss_pred             CeEEecCCCCCeEEEEEEE-CCE---EEEEEEECCEEEEEEEe
Confidence            2333222223457888998 666   88889999998888765

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.24  E-value=1.1e-08  Score=92.14  Aligned_cols=259  Identities=11%  Similarity=0.064  Sum_probs=152.9

Q ss_pred             CCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCc
Q 019349           18 DNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTS   96 (342)
Q Consensus        18 d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~   96 (342)
                      ++..+.+++.++ +..+|..+++++.................+.+.+.+       .++.|..+|.++|+.+........
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~~~~v~v~~-------~~g~l~~~d~~tG~~~W~~~~~~~  174 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVSDGLVLIHT-------SNGQLQALNEADGAVKWTVNLDMP  174 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEETTEEEEEC-------TTSEEEEEETTTCCEEEEEECCC-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEECCEEEEEc-------CCCeEEEEECCCCcEEEEEeCCCC
Confidence            344566666554 799999999887665432211000011133444433       378999999999999988876544


Q ss_pred             eE------EEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCce-----EEEEeeCC--CccEEEEeCCCCccEEE
Q 019349           97 IL------AVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKG-----LCAFSPSL--NACFLAVPASTTKGSVL  162 (342)
Q Consensus        97 v~------~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~~~~l~~~~~~~~g~i~  162 (342)
                      +.      ......+.+++.. ++.+..+|..+++.+...........     +..+...|  .+..+.+++  .+|.+.
T Consensus       175 ~~~~~~~~~~~~~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~--~~g~l~  252 (376)
T 3q7m_A          175 SLSLRGESAPTTAFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALA--YNGNLT  252 (376)
T ss_dssp             ----CCCCCCEEETTEEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEEC--TTSCEE
T ss_pred             ceeecCCCCcEEECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEe--cCcEEE
Confidence            32      2233455555555 67999999999988877654321000     00000000  112444444  478899


Q ss_pred             EEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEE
Q 019349          163 VYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL  242 (342)
Q Consensus       163 iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l  242 (342)
                      .+|..+++.+.....  .....+..  ++..|..++.+|.+ ..+|..+|+.+.+..... ...+......  +.   .|
T Consensus       253 ~~d~~tG~~~w~~~~--~~~~~~~~--~~~~l~~~~~~g~l-~~~d~~tG~~~w~~~~~~-~~~~~~~~~~--~~---~l  321 (376)
T 3q7m_A          253 ALDLRSGQIMWKREL--GSVNDFIV--DGNRIYLVDQNDRV-MALTIDGGVTLWTQSDLL-HRLLTSPVLY--NG---NL  321 (376)
T ss_dssp             EEETTTCCEEEEECC--CCEEEEEE--ETTEEEEEETTCCE-EEEETTTCCEEEEECTTT-TSCCCCCEEE--TT---EE
T ss_pred             EEECCCCcEEeeccC--CCCCCceE--ECCEEEEEcCCCeE-EEEECCCCcEEEeecccC-CCcccCCEEE--CC---EE
Confidence            999999987755442  23444444  35678888888885 699999999887764211 1112222232  33   68


Q ss_pred             EEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349          243 VATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       243 ~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                      .+++.+|.|+++|.++++...+..        ..+.   ..+..          + ...++.|++++.||.++.|+
T Consensus       322 ~v~~~~g~l~~~d~~tG~~~~~~~--------~~~~---~~~~~----------~-~~~~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          322 VVGDSEGYLHWINVEDGRFVAQQK--------VDSS---GFQTE----------P-VAADGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEE--------CCTT---CBCSC----------C-EEETTEEEEEBTTSCEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEe--------cCCC---cceeC----------C-EEECCEEEEEeCCCEEEEEe
Confidence            899999999999988765421100        0000   01100          0 01237899999999999885

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.23  E-value=3.7e-08  Score=87.13  Aligned_cols=217  Identities=10%  Similarity=-0.003  Sum_probs=134.0

Q ss_pred             eEEEEEcCCCCE-EEEEcC-CcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349           10 VFFVSFNQDNSG-FALSTK-DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (342)
Q Consensus        10 V~~l~fs~d~~~-la~g~~-~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~   87 (342)
                      ..+.+|+|++.. +.++.. .++.+||.++++.........+..+.+..+++.++ +.        .+.|.+||..+++.
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~~i~~~~dg~l~v-~~--------~~gl~~~d~~~g~~  121 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSKQLI-AS--------DDGLFLRDTATGVL  121 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTEEEE-EE--------TTEEEEEETTTCCE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcceEEEEeCCCeEEE-EE--------CCCEEEEECCCCcE
Confidence            467899998654 455544 45789999887654322234555555555554443 32        23599999988875


Q ss_pred             EEEEecC-----CceEEEEEcCCeEEEEE-C--------CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           88 LRELNFL-----TSILAVRLNKKRLVIVL-R--------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        88 ~~~~~~~-----~~v~~i~~~~~~~~~~~-d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      .......     ..+.++.+++++.+.++ .        +.|+.++  +++.. .+....  .....+++++++..+.++
T Consensus       122 ~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~--~~~~~i~~s~dg~~lyv~  196 (326)
T 2ghs_A          122 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADI--SIPNSICFSPDGTTGYFV  196 (326)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEE--SSEEEEEECTTSCEEEEE
T ss_pred             EEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCC--cccCCeEEcCCCCEEEEE
Confidence            4333221     25788999887544433 2        3566666  45433 221111  123456677788766655


Q ss_pred             CCCCccEEEEEEcc--CC-ce-----eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCce
Q 019349          154 ASTTKGSVLVYNVM--EL-HS-----HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPS  225 (342)
Q Consensus       154 ~~~~~g~i~iwd~~--~~-~~-----~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~  225 (342)
                      .. .++.|.+||+.  ++ +.     +..+..+...+..++++++|++.++...++.+ ..||. +++.+..+...  ..
T Consensus       197 ~~-~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v-~~~d~-~g~~~~~i~~~--~~  271 (326)
T 2ghs_A          197 DT-KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV-DRYDT-DGNHIARYEVP--GK  271 (326)
T ss_dssp             ET-TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEE-EEECT-TCCEEEEEECS--CS
T ss_pred             EC-CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEE-EEECC-CCCEEEEEECC--CC
Confidence            43 46899999986  55 31     22233334567889999999988777666664 68998 67776666432  23


Q ss_pred             eEEEEEEe-cCCCcccEEEEEeCC
Q 019349          226 TIFSLSFG-QSMQFQDILVATSSS  248 (342)
Q Consensus       226 ~v~~l~fs-~d~~~~~~l~~~s~d  248 (342)
                      .+.+++|+ |++.   .|.+++..
T Consensus       272 ~~~~~af~g~d~~---~L~vt~~~  292 (326)
T 2ghs_A          272 QTTCPAFIGPDAS---RLLVTSAR  292 (326)
T ss_dssp             BEEEEEEESTTSC---EEEEEEBC
T ss_pred             CcEEEEEecCCCC---EEEEEecC
Confidence            58999998 8876   66555443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.23  E-value=2.6e-09  Score=97.54  Aligned_cols=237  Identities=15%  Similarity=0.065  Sum_probs=151.2

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEeCCCCcEEEEEeeC---------CEEEEEEcCCCCeEEEEcCCCCCC
Q 019349           12 FVSFNQDNSGFALST-----------KDGFKIFDSSTGRLCYERAVG---------AFSIVEMLYSSSLLAIVGAGEQPS   71 (342)
Q Consensus        12 ~l~fs~d~~~la~g~-----------~~g~~v~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~   71 (342)
                      .++|+|||++|+++.           ++.+.++|..+++.+.....+         .-..+.+.++++.+.+....    
T Consensus       122 gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----  197 (426)
T 3c75_H          122 HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----  197 (426)
T ss_dssp             EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----
T ss_pred             ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----
Confidence            799999999887775           345799999999877655432         11134566777777766531    


Q ss_pred             CCCCeEEEEECCCCcEEEEEecCCceEEEEEcC-CeEEEEE-CCeEEEEECCCCceeeE----EeCCCCCceEEEEeeCC
Q 019349           72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNK-KRLVIVL-REKTYIYDANTLAILDT----IDTVPNLKGLCAFSPSL  145 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~-~~~~~~~-d~~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~~  145 (342)
                       .++.|.+.|+.+++.+.++..+.. ..+.... ..++... |+++.+.++.+++....    +.....+... .+...+
T Consensus       198 -~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~-~~~~~~  274 (426)
T 3c75_H          198 -PAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLIN-HPAFSL  274 (426)
T ss_dssp             -SSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCS-CCEECT
T ss_pred             -CCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceee-EeeecC
Confidence             267899999999999998887553 1222222 2233333 88888888866655432    1111121111 122244


Q ss_pred             CccEEEEeCCCCccEEEEEEccCCcee--EEEec----------ccCCeeEEEECCCCCEEEEEeC----------CCcE
Q 019349          146 NACFLAVPASTTKGSVLVYNVMELHSH--CEIDA----------HQAPLAAIVLSSNGMYIATASE----------QGTI  203 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~--~~~~~----------h~~~v~~i~~s~dg~~lat~s~----------dg~~  203 (342)
                      ++..+++..  ..|.|.+.|+......  ..+..          .......++++|||++|..+..          +++ 
T Consensus       275 dg~~~~~~s--~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~-  351 (426)
T 3c75_H          275 RSGRLVWPT--YTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRF-  351 (426)
T ss_dssp             TTCEEEEEB--TTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEE-
T ss_pred             CCCEEEEEe--CCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCE-
Confidence            444555555  3588999998654321  11110          1112234789999987777642          234 


Q ss_pred             EEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCCCCCCC
Q 019349          204 IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAINQR  263 (342)
Q Consensus       204 irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~~~~  263 (342)
                      +-++|+.+.+.+.++..+   ....+|+|+||++  .+|+++. .+++|.|+|+.+.+..+
T Consensus       352 VsVID~~T~kvv~~I~vg---~~P~gia~spDg~--~~lyv~n~~s~~VsVID~~t~kvv~  407 (426)
T 3c75_H          352 VVVLNAETGERINKIELG---HEIDSINVSQDAE--PLLYALSAGTQTLHIYDAATGEELR  407 (426)
T ss_dssp             EEEEETTTCCEEEEEEEE---EEECEEEECCSSS--CEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEEEECCCCeEEEEEECC---CCcCeEEEccCCC--EEEEEEcCCCCeEEEEECCCCCEEE
Confidence            579999999999988643   2478899999986  2566666 58999999999887543

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.19  E-value=6.6e-08  Score=84.24  Aligned_cols=195  Identities=11%  Similarity=0.032  Sum_probs=124.4

Q ss_pred             EEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe-EEEEECCeEEEEECCCCceeeEEeC
Q 019349           53 EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-LVIVLREKTYIYDANTLAILDTIDT  131 (342)
Q Consensus        53 ~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~  131 (342)
                      .+....+.+.++..      ..++|..||..+++. ..+..+..+.+++++++. ++++.++.|.+||..+++.......
T Consensus        19 ~w~~~~~~l~~~d~------~~~~i~~~d~~~~~~-~~~~~~~~~~~i~~~~dG~l~v~~~~~l~~~d~~~g~~~~~~~~   91 (297)
T 3g4e_A           19 VWEEVSNSLLFVDI------PAKKVCRWDSFTKQV-QRVTMDAPVSSVALRQSGGYVATIGTKFCALNWKEQSAVVLATV   91 (297)
T ss_dssp             EEETTTTEEEEEET------TTTEEEEEETTTCCE-EEEECSSCEEEEEEBTTSSEEEEETTEEEEEETTTTEEEEEEEC
T ss_pred             eEECCCCEEEEEEC------CCCEEEEEECCCCcE-EEEeCCCceEEEEECCCCCEEEEECCeEEEEECCCCcEEEEEec
Confidence            44454556666654      378999999988765 456667789999998765 5556688999999988765433322


Q ss_pred             CC--CCceEEEEeeCCCccEEEEeCC---------CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEE-eC
Q 019349          132 VP--NLKGLCAFSPSLNACFLAVPAS---------TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATA-SE  199 (342)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~~l~~~~~---------~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~-s~  199 (342)
                      ..  .......+..++++.+.+....         ...+.|..+|.. ++ +..+..+....+.++|+|||+.|..+ +.
T Consensus        92 ~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~-~~~~~~~~~~pngi~~spdg~~lyv~~~~  169 (297)
T 3g4e_A           92 DNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HH-VKKYFDQVDISNGLDWSLDHKIFYYIDSL  169 (297)
T ss_dssp             CTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SC-EEEEEEEESBEEEEEECTTSCEEEEEEGG
T ss_pred             CCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CC-EEEEeeccccccceEEcCCCCEEEEecCC
Confidence            21  1234556777788876664421         012344444433 33 22333344557899999999877554 44


Q ss_pred             CCcEEEEEEc--CCCeeE--EEecc-CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          200 QGTIIRVFLV--SEATKS--YSFRR-GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       200 dg~~irlwd~--~~~~~~--~~~~~-~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      +++ |.+||+  .+|...  ..+.. .........|++.+++.   +.++....+.|.+||.++++
T Consensus       170 ~~~-i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~---lwva~~~~~~v~~~d~~tG~  231 (297)
T 3g4e_A          170 SYS-VDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK---LWVACYNGGRVIRLDPVTGK  231 (297)
T ss_dssp             GTE-EEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC---EEEEEETTTEEEEECTTTCC
T ss_pred             CCc-EEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC---EEEEEcCCCEEEEEcCCCce
Confidence            565 578987  455431  11111 11124578899999998   78877788899999987554

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.18  E-value=2.1e-07  Score=80.39  Aligned_cols=228  Identities=11%  Similarity=0.040  Sum_probs=143.0

Q ss_pred             CCCeEEEEEcCCCCEEEEEcC-CcEEEEeCCCCcEE-EEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            7 SYPVFFVSFNQDNSGFALSTK-DGFKIFDSSTGRLC-YERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~-~g~~v~d~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      ...+.+++++++|+..++... ..+..||.. ++.. +...  ......+.+..+.+.. ++..      .++.|..+|.
T Consensus        61 ~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~-v~~~------~~~~i~~~~~  132 (300)
T 2qc5_A           61 DAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIW-FTQL------NGDRIGKLTA  132 (300)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEE-EEET------TTTEEEEECT
T ss_pred             CCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEE-EEcc------CCCeEEEECC
Confidence            357899999999997776654 457899987 6543 2221  1234444454444433 3332      2578999998


Q ss_pred             CCCcEEEEEec---CCceEEEEEcCCe-EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           83 TTGTALRELNF---LTSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        83 ~~~~~~~~~~~---~~~v~~i~~~~~~-~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      . ++.. .+..   ...+.+++++++. ++++.  .+.|..|+. +++... +...........++.++++.+.++..  
T Consensus       133 ~-g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~-~~~~~~~~~~~~i~~d~~g~l~v~~~--  206 (300)
T 2qc5_A          133 D-GTIY-EYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEE-YPLPTNAAAPVGITSGNDGALWFVEI--  206 (300)
T ss_dssp             T-SCEE-EEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE-EECSSTTCCEEEEEECTTSSEEEEET--
T ss_pred             C-CCEE-EccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEE-eeCCCCCCCcceEEECCCCCEEEEcc--
Confidence            7 5544 3322   2468889997754 55555  568999998 555443 43322333456677777776666554  


Q ss_pred             CccEEEEEEccCCceeE-EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC
Q 019349          157 TKGSVLVYNVMELHSHC-EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  235 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~-~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d  235 (342)
                      ..+.|.+||. +++... .+..+...+.+|+++++|++.++...++. |..||. +++.. .+........+.+++++++
T Consensus       207 ~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~-i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~  282 (300)
T 2qc5_A          207 MGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQ-IGRITN-DNTIQ-EYQLQTENAEPHGITFGKD  282 (300)
T ss_dssp             TTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTE-EEEECT-TSCEE-EEECCSTTCCCCCEEECTT
T ss_pred             CCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCe-EEEECC-CCcEE-EEECCccCCccceeEeCCC
Confidence            3578999998 444332 23344567899999999997777655666 468998 45433 3322212334788999999


Q ss_pred             CCcccEEEEEeCCCcEEEEecC
Q 019349          236 MQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       236 ~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +.   ++++.. . .|..+|.+
T Consensus       283 g~---l~v~~~-~-~i~~~~p~  299 (300)
T 2qc5_A          283 GS---VWFALK-C-KIGKLNLN  299 (300)
T ss_dssp             SC---EEEECS-S-EEEEEEEC
T ss_pred             CC---EEEEcc-C-ceEEeCCC
Confidence            97   555444 4 77777653

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.18  E-value=5.1e-12  Score=114.20  Aligned_cols=259  Identities=11%  Similarity=0.030  Sum_probs=132.1

Q ss_pred             CCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC-
Q 019349           18 DNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-   95 (342)
Q Consensus        18 d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~-   95 (342)
                      ++..+++++.++ +..||..+|+++.....+.+....+..+.. +++++.      .|+.|+.||.++|+.+....+.. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~~~~~s~p~~~~g~-~~v~~s------~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKEDPVLQVPTHVEEP-AFLPDP------NDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEECCCSCCCC-----C-CEEECT------TTCCEEEC-----CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecCCCceecceEcCCC-EEEEeC------CCCEEEEEECCCCceeeeeeccCc
Confidence            566788887766 699999999988765543322111222222 333332      48999999999998877665431 


Q ss_pred             -ceE-EEEE-cCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce
Q 019349           96 -SIL-AVRL-NKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS  171 (342)
Q Consensus        96 -~v~-~i~~-~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~  171 (342)
                       .+. ...+ ..+.++++. ++.++.||..+++.+..+..+..    ..+++  ++..+++++  .++.|..||.++++.
T Consensus        81 ~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~----~~~~p--~~~~v~~~~--~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           81 ELVQASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA----DSLSP--STSLLYLGR--TEYTITMYDTKTREL  152 (369)
T ss_dssp             HHHTTCSCC-----CCCCEEEEEEEEECCC----------------------------EEEEE--EEEEEECCCSSSSSC
T ss_pred             cccccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc----ccccc--cCCEEEEEe--cCCEEEEEECCCCCE
Confidence             110 0111 223334433 78999999999988877654321    12233  445666655  589999999999987


Q ss_pred             eEEEecccCCeeEEEECCCC---CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEE----EE
Q 019349          172 HCEIDAHQAPLAAIVLSSNG---MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL----VA  244 (342)
Q Consensus       172 ~~~~~~h~~~v~~i~~s~dg---~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l----~~  244 (342)
                      +..+..+.  ....++++++   ..+++++.||.+ +.||..+|+.+.++..+  ...+...++++++.   ..    ..
T Consensus       153 ~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~dg~v-~a~d~~tG~~~W~~~~~--~pv~~~~~~~~dg~---~~v~~~~~  224 (369)
T 2hz6_A          153 RWNATYFD--YAASLPEDDVDYKMSHFVSNGDGLV-VTVDSESGDVLWIQNYA--SPVVAFYVWQREGL---RKVMHINV  224 (369)
T ss_dssp             CCEEEEEE--ECCBCCCCCTTCCCCEEEEETSCEE-EEECTTTCCEEEEEECS--SCEEEEEECTTSSC---EEECCEEE
T ss_pred             EEeEeccc--ccCccccCCccccceEEEECCCCEE-EEEECCCCcEEEEecCC--CceEEEEEecCCce---Eeccceee
Confidence            65554321  2233444432   557778889974 79999999988877532  11233345566664   21    12


Q ss_pred             EeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          245 TSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       245 ~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      +  ++.++.+|.++++..                 ...+|..........  + ...++.|++++.||.++.++...
T Consensus       225 ~--~~~l~~ld~~tG~~~-----------------~~~~W~~~~~~~~~s--p-~~~~g~lyv~~~~G~l~al~~~~  279 (369)
T 2hz6_A          225 A--VETLRYLTFMSGEVG-----------------RITKWKYPFPKETEA--K-SKLTPTLYVGKYSTSLYASPSMV  279 (369)
T ss_dssp             E--HHHHHHHHHHHHHHH-----------------HHHTSCCCCCCHHHH--H-HHSEEEECBEECSSCEECCEEEE
T ss_pred             c--ccceeeeehhcCCcc-----------------cceeeeeccCccccc--c-ccccceEEEecccCCEEecCccc
Confidence            2  345666665443300                 001232211000000  0 01236899999999999998764

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.18  E-value=5.4e-08  Score=87.59  Aligned_cols=220  Identities=9%  Similarity=0.036  Sum_probs=138.0

Q ss_pred             CCEEEEEcCC-cEEEEeCCCCcEEEEEeeCC----------EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349           19 NSGFALSTKD-GFKIFDSSTGRLCYERAVGA----------FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (342)
Q Consensus        19 ~~~la~g~~~-g~~v~d~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~   87 (342)
                      +..+.+++.+ .+..||..+++++.......          ..........+.+.+.+.       ++.|..+|.++|+.
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~-------~g~l~a~d~~tG~~  125 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE-------KAQVYALNTSDGTV  125 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET-------TSEEEEEETTTCCE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC-------CCEEEEEECCCCCE
Confidence            4566677655 57999999998876554321          111122223445554443       78999999999999


Q ss_pred             EEEEecCCceE-EEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCc-----eEEEEeeCCCccEEEEeCCCCccE
Q 019349           88 LRELNFLTSIL-AVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLK-----GLCAFSPSLNACFLAVPASTTKGS  160 (342)
Q Consensus        88 ~~~~~~~~~v~-~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~g~  160 (342)
                      +........+. ......+.+++.. ++.++.+|..+++.+..........     ....+.   ++ .+.++.  .+|.
T Consensus       126 ~W~~~~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~---~~-~v~~g~--~~g~  199 (376)
T 3q7m_A          126 AWQTKVAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA---FG-AAVVGG--DNGR  199 (376)
T ss_dssp             EEEEECSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE---TT-EEEECC--TTTE
T ss_pred             EEEEeCCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE---CC-EEEEEc--CCCE
Confidence            98887654332 2234455666655 7799999999999888776533211     111111   22 444444  4789


Q ss_pred             EEEEEccCCceeEEEecccCC-------eeEEEECC--CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEE
Q 019349          161 VLVYNVMELHSHCEIDAHQAP-------LAAIVLSS--NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  231 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~~~-------v~~i~~s~--dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~  231 (342)
                      |..+|..+++.+.........       +..+.-+|  .+..+..++.+|.+ ..+|..+|+.+.+....    ....+.
T Consensus       200 l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l-~~~d~~tG~~~w~~~~~----~~~~~~  274 (376)
T 3q7m_A          200 VSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNL-TALDLRSGQIMWKRELG----SVNDFI  274 (376)
T ss_dssp             EEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCE-EEEETTTCCEEEEECCC----CEEEEE
T ss_pred             EEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEE-EEEECCCCcEEeeccCC----CCCCce
Confidence            999999999877655422100       00011111  24677778888885 69999999988776432    233444


Q ss_pred             EecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          232 FGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      ..  +.   .|.+++.++.|..+|.++++.
T Consensus       275 ~~--~~---~l~~~~~~g~l~~~d~~tG~~  299 (376)
T 3q7m_A          275 VD--GN---RIYLVDQNDRVMALTIDGGVT  299 (376)
T ss_dssp             EE--TT---EEEEEETTCCEEEEETTTCCE
T ss_pred             EE--CC---EEEEEcCCCeEEEEECCCCcE
Confidence            43  44   688888999999999887754

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.17  E-value=6e-08  Score=84.63  Aligned_cols=177  Identities=11%  Similarity=0.094  Sum_probs=113.3

Q ss_pred             CCeEEEEECCCCcEEEEEe-----cCCceEEEEEcCC-e-EEEEE-CCeEEEEECCCCceeeE-EeCCCC--CceEEEEe
Q 019349           74 PRRLCLFNTTTGTALRELN-----FLTSILAVRLNKK-R-LVIVL-REKTYIYDANTLAILDT-IDTVPN--LKGLCAFS  142 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~-----~~~~v~~i~~~~~-~-~~~~~-d~~i~i~d~~~~~~~~~-~~~~~~--~~~~~~~~  142 (342)
                      ++.|.+||..+++......     ....+.++.++++ . ++++. .+.|.+||.. ++.... ......  ...+..++
T Consensus        45 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~  123 (314)
T 1pjx_A           45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCA  123 (314)
T ss_dssp             CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEE
T ss_pred             CCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEE
Confidence            6789999988887643222     2256889999887 4 56665 4589999988 654322 111111  12345667


Q ss_pred             eCCCccEEEEeCCCC--------------ccEEEEEEccCCceeEEEecccCCeeEEEEC----CCCCEEEEE-eCCCcE
Q 019349          143 PSLNACFLAVPASTT--------------KGSVLVYNVMELHSHCEIDAHQAPLAAIVLS----SNGMYIATA-SEQGTI  203 (342)
Q Consensus       143 ~~~~~~~l~~~~~~~--------------~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s----~dg~~lat~-s~dg~~  203 (342)
                      .++++.+.++... .              .+.|..||.. ++.. .+..+....+.++++    |+|+.|..+ ..++. 
T Consensus       124 ~d~~g~l~v~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~-  199 (314)
T 1pjx_A          124 FDYEGNLWITAPA-GEVAPADYTRSMQEKFGSIYCFTTD-GQMI-QVDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKK-  199 (314)
T ss_dssp             ECTTSCEEEEECB-CBCTTSCCCBTTSSSCEEEEEECTT-SCEE-EEEEEESSEEEEEEEECTTSCEEEEEEEETTTTE-
T ss_pred             ECCCCCEEEEecC-cccccccccccccCCCCeEEEECCC-CCEE-EeccCCCCcceEEEecccCCCCCEEEEEECCCCe-
Confidence            7777777665542 1              1567777765 4433 233344556889999    999766555 45565 


Q ss_pred             EEEEEcC-CCee-----EEEeccCcCc-eeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          204 IRVFLVS-EATK-----SYSFRRGTYP-STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       204 irlwd~~-~~~~-----~~~~~~~~~~-~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      |.+||.. +++.     ...+..  .. ..+..+++++++.   ++++...++.|.+||.++.+
T Consensus       200 i~~~~~~~~g~~~~~~~~~~~~~--~~~~~p~~i~~d~~G~---l~v~~~~~~~i~~~d~~~g~  258 (314)
T 1pjx_A          200 LWSYDIKGPAKIENKKVWGHIPG--THEGGADGMDFDEDNN---LLVANWGSSHIEVFGPDGGQ  258 (314)
T ss_dssp             EEEEEEEETTEEEEEEEEEECCC--CSSCEEEEEEEBTTCC---EEEEEETTTEEEEECTTCBS
T ss_pred             EEEEECCCCCccccceEEEECCC--CCCCCCCceEECCCCC---EEEEEcCCCEEEEEcCCCCc
Confidence            5799986 4542     222221  11 4578899999998   78877788999999976443

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.15  E-value=8.6e-09  Score=94.11  Aligned_cols=271  Identities=11%  Similarity=0.046  Sum_probs=167.4

Q ss_pred             CCCCEEEEEcC------CcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCC---CCCCeEEEEECCCCcE
Q 019349           17 QDNSGFALSTK------DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPS---LSPRRLCLFNTTTGTA   87 (342)
Q Consensus        17 ~d~~~la~g~~------~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~---~~d~~i~iwd~~~~~~   87 (342)
                      +++..+.+...      +.+.++|+.+++++.....+...-+.+.++.+.+.+........   -.++.|.++|..+++.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~Pgia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v  161 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLPHPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP  161 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCCceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcE
Confidence            57777766544      35799999999888766543333577778888777664200000   0156899999999999


Q ss_pred             EEEEecC--------CceEEEEEcCC--eEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           88 LRELNFL--------TSILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        88 ~~~~~~~--------~~v~~i~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      +.++..+        .....+.++++  .++++.   ++.|.+.|+.+++.+.++....    ...+.+.+...+++.+ 
T Consensus       162 v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g----~~~~~p~g~~~~v~~~-  236 (426)
T 3c75_H          162 IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD----CYHIFPASPTVFYMNC-  236 (426)
T ss_dssp             EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTEEEEEE-
T ss_pred             EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC----ceeeccCCCcEEEEEc-
Confidence            9988764        23456778775  466655   4689999999999999887632    1334444443444444 


Q ss_pred             CCCccEEEEEEccCCceeEE----EecccCCe-eEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE--EEecc-------
Q 019349          155 STTKGSVLVYNVMELHSHCE----IDAHQAPL-AAIVLSSNGMYIATASEQGTIIRVFLVSEATKS--YSFRR-------  220 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~----~~~h~~~v-~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~--~~~~~-------  220 (342)
                        .||.+.+.++.+++....    +.....++ ..+.|++++..++..+..|++ .+.|+..+...  ..+..       
T Consensus       237 --~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V-~ViD~~~~~~~v~~~~~~~~~~~i~  313 (426)
T 3c75_H          237 --RDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKI-FQADLTAEGATFRAPIEALTEAERA  313 (426)
T ss_dssp             --TTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEE-EEEEECSSCEEECCCEESSCTTTGG
T ss_pred             --CCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcE-EEEeccCCceEEeeeeeeccccccc
Confidence              367888888865554422    22222222 235689999888887888874 69998655421  11110       


Q ss_pred             -CcCceeEEEEEEecCCCcccEEEEEeC----------CCcEEEEecCCCCCCCCCCCcccccccccccccccccccccc
Q 019349          221 -GTYPSTIFSLSFGQSMQFQDILVATSS----------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADH  289 (342)
Q Consensus       221 -~~~~~~v~~l~fs~d~~~~~~l~~~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (342)
                       +..+.....++|+||++   +|.++..          .++|.++|+++.+..++..     +    +.   .-      
T Consensus       314 ~g~~p~g~~~va~s~dg~---rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~-----v----g~---~P------  372 (426)
T 3c75_H          314 DDWRPGGWQQTAYHRQSD---RIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIE-----L----GH---EI------  372 (426)
T ss_dssp             GTEEECSSSCEEEEGGGT---EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE-----E----EE---EE------
T ss_pred             cccccCCceeeEEcCCCC---EEEEEecccccccccCCCCEEEEEECCCCeEEEEEE-----C----CC---Cc------
Confidence             00011122378999987   6666542          3579999998876543200     0    00   01      


Q ss_pred             ceeeeccCCCcccc-EEEEEE-eCCcEEEEEEe
Q 019349          290 HVLRNAFPAGVKRA-SVSVIT-YNGYFVEYIFS  320 (342)
Q Consensus       290 ~~~~~~~~~~~~~~-~l~~~~-~dg~v~~~~~~  320 (342)
                          ..+.+.++++ .+++.. .++.|.+++..
T Consensus       373 ----~gia~spDg~~~lyv~n~~s~~VsVID~~  401 (426)
T 3c75_H          373 ----DSINVSQDAEPLLYALSAGTQTLHIYDAA  401 (426)
T ss_dssp             ----CEEEECCSSSCEEEEEETTTTEEEEEETT
T ss_pred             ----CeEEEccCCCEEEEEEcCCCCeEEEEECC
Confidence                1223344556 888888 49999999754

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.15  E-value=1.9e-08  Score=90.33  Aligned_cols=275  Identities=11%  Similarity=0.023  Sum_probs=167.0

Q ss_pred             EEEEEcCCCCEEEEEcC------CcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCC-C--CCCCCeEEEEE
Q 019349           11 FFVSFNQDNSGFALSTK------DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQ-P--SLSPRRLCLFN   81 (342)
Q Consensus        11 ~~l~fs~d~~~la~g~~------~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~--~~~d~~i~iwd   81 (342)
                      ......|++..+.+...      +.+.++|..+++.+.....+....+.+.++++.+.++..... .  ...++.|.+||
T Consensus        36 ~~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           36 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eeeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCCcEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            34567899999887754      247899999998876665433334788888887776641000 0  00256899999


Q ss_pred             CCCCcEEEEEecCC--------ceEEEEEcCC--eEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc
Q 019349           82 TTTGTALRELNFLT--------SILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC  148 (342)
Q Consensus        82 ~~~~~~~~~~~~~~--------~v~~i~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (342)
                      ..+++.+.++..+.        ....+.++++  .++++.   ++.|.++|+.+++.+.++....    ...+.+.+...
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g----~~~~~P~g~~~  191 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD----CYHIFPTAPDT  191 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS----EEEEEEEETTE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC----cceeecCCCce
Confidence            99999999887542        3556788776  456664   4689999999999999997532    12233333333


Q ss_pred             EEEEeCCCCccEEEEEEccC-CceeEEEeccc----CCee-EEEEC-CCCCEEEEEeCCCcEEEEEEcCCCe--eEEEec
Q 019349          149 FLAVPASTTKGSVLVYNVME-LHSHCEIDAHQ----APLA-AIVLS-SNGMYIATASEQGTIIRVFLVSEAT--KSYSFR  219 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~-~~~~~~~~~h~----~~v~-~i~~s-~dg~~lat~s~dg~~irlwd~~~~~--~~~~~~  219 (342)
                      +++.+   .||.+.+.++.+ ++.......+.    .++. ...|. ++|+++. .+.+|++ .+.|+.++.  .+..+.
T Consensus       192 ~~~~~---~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V-~v~d~~~~~~~v~~~~~  266 (386)
T 3sjl_D          192 FFMHC---RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKI-HQIDLSSGDAKFLPAVE  266 (386)
T ss_dssp             EEEEE---TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEE-EEEECTTSSCEECCCEE
T ss_pred             eEEEC---CCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEE-EeCCCEE-EEEECCCCcceeeccee
Confidence            44433   378888888875 55432221111    2221 23553 6776544 5557874 799997654  222221


Q ss_pred             --------cCcCceeEEEEEEecCCCcccEEEEEeC----------CCcEEEEecCCCCCCCCCCCcccccccccccccc
Q 019349          220 --------RGTYPSTIFSLSFGQSMQFQDILVATSS----------SGSLHVFSPGFAINQRRGGRTSSILGSILPESVN  281 (342)
Q Consensus       220 --------~~~~~~~v~~l~fs~d~~~~~~l~~~s~----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (342)
                              .+..+.....++++|+++   .|.+...          .++|.++|+++.+..++..         ++.   
T Consensus       267 ~~~~~~~~~g~~p~g~q~~a~~~~~~---~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~---------vg~---  331 (386)
T 3sjl_D          267 ALTEAERADGWRPGGWQQVAYHRALD---RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE---------MGH---  331 (386)
T ss_dssp             SSCHHHHHTTEEECSSSCEEEETTTT---EEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE---------EEE---
T ss_pred             ccccccccccccCCCcceeeECCCCC---eEEEEeccccccccCCCCCEEEEEECCCCeEEEEEE---------CCC---
Confidence                    111122234578899988   7776643          2579999998876533200         000   


Q ss_pred             ccccccccceeeeccCCCcccc-EEEEEEe-CCcEEEEEE
Q 019349          282 EVLDPADHHVLRNAFPAGVKRA-SVSVITY-NGYFVEYIF  319 (342)
Q Consensus       282 ~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~-dg~v~~~~~  319 (342)
                      ..|          .+.+.++++ .|++.+. +|.|.+++.
T Consensus       332 ~~~----------~lavs~D~~~~ly~tn~~~~~VsViD~  361 (386)
T 3sjl_D          332 EID----------SINVSQDEKPLLYALSTGDKTLYIHDA  361 (386)
T ss_dssp             EEC----------EEEECSSSSCEEEEEETTTTEEEEEET
T ss_pred             Ccc----------eEEECCCCCeEEEEEcCCCCeEEEEEC
Confidence            111          222344444 6777665 899998864

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.13  E-value=1.4e-08  Score=100.00  Aligned_cols=234  Identities=12%  Similarity=0.024  Sum_probs=141.7

Q ss_pred             cCCCCEEEEEc-CCc---EEEEeC--C---CCc--EEEEE----eeC--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349           16 NQDNSGFALST-KDG---FKIFDS--S---TGR--LCYER----AVG--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus        16 s~d~~~la~g~-~~g---~~v~d~--~---~~~--~~~~~----~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      +|||++++-.. +.+   ..+|..  .   .++  .++..    ..+  .+....+.++++.+++.....  .....+|+
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~--G~e~~~i~  192 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDG--GSDWRTVK  192 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEET--TCSEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCC--CCceEEEE
Confidence            38999877543 333   356643  3   332  22111    112  345567888888888775310  01125799


Q ss_pred             EEECCCCcEEEEEecCCceEEEEEcCC-eEEEEE-CC--------------eEEEEECCCCcee--eEEeCCCCCceEEE
Q 019349           79 LFNTTTGTALRELNFLTSILAVRLNKK-RLVIVL-RE--------------KTYIYDANTLAIL--DTIDTVPNLKGLCA  140 (342)
Q Consensus        79 iwd~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~~-d~--------------~i~i~d~~~~~~~--~~~~~~~~~~~~~~  140 (342)
                      +||+.+++.+........+..+.|+++ .++... ++              .|++|++.+++..  ..+....++.....
T Consensus       193 v~dl~tg~~~~~~~~~~~~~~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~  272 (741)
T 1yr2_A          193 FVGVADGKPLADELKWVKFSGLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHG  272 (741)
T ss_dssp             EEETTTCCEEEEEEEEEESCCCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             EEECCCCCCCCccCCCceeccEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEE
Confidence            999999987654211112356788887 334443 32              4999999877532  22333333334667


Q ss_pred             EeeCCCccEEEEeCCC---CccEEEEEEccCC--ceeEEEecccCCeeEEEECCCCCEEEEEeCCCc---EEEEEEcCCC
Q 019349          141 FSPSLNACFLAVPAST---TKGSVLVYNVMEL--HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT---IIRVFLVSEA  212 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~---~~g~i~iwd~~~~--~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~---~irlwd~~~~  212 (342)
                      +.++||+.+|++....   ....|.+||+.++  ++...+..+...+... ++|+|+.|+..+.++.   -|.+||+.++
T Consensus       273 ~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          273 ASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             EEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             EEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            7888999888876531   1348999999887  3145566666555555 3589999988876432   2468999875


Q ss_pred             -eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          213 -TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       213 -~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                       .....+..+ ....+.+++|+ ++.   ++++...|+..+||.++
T Consensus       352 ~~~~~~l~~~-~~~~l~~~~~~-~~~---lv~~~~~dg~~~l~~~~  392 (741)
T 1yr2_A          352 TPRFDTVVPE-SKDNLESVGIA-GNR---LFASYIHDAKSQVLAFD  392 (741)
T ss_dssp             SCEEEEEECC-CSSEEEEEEEE-BTE---EEEEEEETTEEEEEEEE
T ss_pred             ccccEEEecC-CCCeEEEEEEE-CCE---EEEEEEECCEEEEEEEe
Confidence             233333332 23347778887 455   78888899988887654

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.13  E-value=7.1e-09  Score=92.46  Aligned_cols=240  Identities=10%  Similarity=0.035  Sum_probs=144.6

Q ss_pred             CCeEEEEEcCCCCEEEEEc--CCc-EEEEeCCCCcEEEE--------EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            8 YPVFFVSFNQDNSGFALST--KDG-FKIFDSSTGRLCYE--------RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~--~~g-~~v~d~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      ..+..++++++|+.+++..  .++ .+||.++++++..-        .+......+.+..+. .+.++..+. +...+.+
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g-~L~v~D~g~-~~~~~~~   94 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNG-IVWMLDNGN-QSKSVPK   94 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSS-EEEEEECHH-HHTSCCE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCC-cEEEEcCCC-CcCCCCe
Confidence            4678999999999888753  223 46666555554310        011233444554443 344443210 0001468


Q ss_pred             EEEEECCCCcEEEEEecCC-------ceEEEEEcCC--eEEEEE-----CCeEEEEECCCCceeeEEeCCCC--------
Q 019349           77 LCLFNTTTGTALRELNFLT-------SILAVRLNKK--RLVIVL-----REKTYIYDANTLAILDTIDTVPN--------  134 (342)
Q Consensus        77 i~iwd~~~~~~~~~~~~~~-------~v~~i~~~~~--~~~~~~-----d~~i~i~d~~~~~~~~~~~~~~~--------  134 (342)
                      |.+||+.+++.+..+.++.       .+.+++++++  .++++.     ++.|.+||+.+++..+.+..+..        
T Consensus        95 i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           95 LVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            9999999999887776542       3578888853  444543     35899999988876555432100        


Q ss_pred             -------------------CceEEEEeeCCCccEEEEeCCCCccEEEEEEcc---CCc-----eeE--EEecccCCeeEE
Q 019349          135 -------------------LKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM---ELH-----SHC--EIDAHQAPLAAI  185 (342)
Q Consensus       135 -------------------~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~---~~~-----~~~--~~~~h~~~v~~i  185 (342)
                                         ......++.++++..|.++.. ....+..++..   .+.     ...  ...++......|
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgi  253 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPM-HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGI  253 (343)
T ss_dssp             EETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEES-SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCE
T ss_pred             eECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeC-CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceE
Confidence                               012456777788877776653 23466666542   110     000  122344556789


Q ss_pred             EECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          186 VLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       186 ~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      +++++|+++++...+++ |.+||..+|+..... .........+++|.++++   ++++.+..+.+.+|.
T Consensus       254 a~d~~G~l~va~~~~~~-V~~~d~~~G~~~~~~-~~~~~~~p~~va~~~~g~---l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          254 SIDKDHNIYVGDLAHSA-IGVITSADRAYKLLV-TDEKLSWTDSFNFGSDGY---LYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EECTTCCEEEEEGGGTE-EEEEETTTTEEEEEE-ECGGGSCEEEEEECTTSC---EEEEECCGGGSGGGB
T ss_pred             EECCCCCEEEEccCCCe-EEEEECCCCCEEEEE-ECCceecCCeeEECCCCc---EEEEeCccccccccc
Confidence            99999999999888887 579998667643222 211123478999999988   777777655554443

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.13  E-value=5.9e-09  Score=101.44  Aligned_cols=191  Identities=16%  Similarity=0.090  Sum_probs=119.8

Q ss_pred             CCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCE-----------EEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAF-----------SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus        19 ~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      +..|.+++.++ +.-+|..+|+++.+.....-           ...........+.+.+       .++.|..+|.++|+
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~-------~dg~l~alD~~tG~  149 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGA-------WDGRLIALDAATGK  149 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEEC-------TTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEc-------CCCEEEEEECCCCC
Confidence            33455555544 68889999988876543210           0000111234444443       37899999999999


Q ss_pred             EEEEEecC------CceE-EEEEcCCeEEEEE-------CCeEEEEECCCCceeeEEeCCCCCc----------------
Q 019349           87 ALRELNFL------TSIL-AVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLK----------------  136 (342)
Q Consensus        87 ~~~~~~~~------~~v~-~i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~----------------  136 (342)
                      .+.++...      ..+. ...+..+.+++..       ++.|+.||..+++.+..+.......                
T Consensus       150 ~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w  229 (677)
T 1kb0_A          150 EVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (677)
T ss_dssp             EEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             EEeeecCCcCcCcCcccccCcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence            99988764      1221 1223455555544       4789999999999998886543220                


Q ss_pred             -----------e---EEEEeeCCCccEEEEeCCCCcc-------------------EEEEEEccCCceeEEEec--cc--
Q 019349          137 -----------G---LCAFSPSLNACFLAVPASTTKG-------------------SVLVYNVMELHSHCEIDA--HQ--  179 (342)
Q Consensus       137 -----------~---~~~~~~~~~~~~l~~~~~~~~g-------------------~i~iwd~~~~~~~~~~~~--h~--  179 (342)
                                 +   ...++.++++..+.++..  ++                   .|..+|..+++.+-.++.  |.  
T Consensus       230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~--~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~w  307 (677)
T 1kb0_A          230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTG--NGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNW  307 (677)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETTTTEEEEECC--CEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCS
T ss_pred             cccCceeEeCCCcccccceeEcCCCCEEEEECC--CCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccc
Confidence                       0   012334444555555542  32                   599999999998866653  31  


Q ss_pred             -----CCeeEEEECCCC---CEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349          180 -----APLAAIVLSSNG---MYIATASEQGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       180 -----~~v~~i~~s~dg---~~lat~s~dg~~irlwd~~~~~~~~~~~  219 (342)
                           .....+....+|   ..|+.++.+|.+ .++|..+|+.+..+.
T Consensus       308 d~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l-~~lD~~tG~~l~~~~  354 (677)
T 1kb0_A          308 DYTSTQPMILADIKIAGKPRKVILHAPKNGFF-FVLDRTNGKFISAKN  354 (677)
T ss_dssp             CCCCCSCCEEEEEEETTEEEEEEEECCTTSEE-EEEETTTCCEEEEEE
T ss_pred             ccccCCCcEEEecccCCcEeeEEEEECCCCEE-EEEECCCCCEecccc
Confidence                 122333444477   689999999975 799999999987764

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.12  E-value=2.6e-08  Score=96.89  Aligned_cols=235  Identities=9%  Similarity=0.069  Sum_probs=149.4

Q ss_pred             CCCEEEEEcCCc-EEEEeCCCCcEEEEEeeC-C------EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEE
Q 019349           18 DNSGFALSTKDG-FKIFDSSTGRLCYERAVG-A------FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR   89 (342)
Q Consensus        18 d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~   89 (342)
                      ++..|++++.++ +..+|..+|+++.+...+ .      +...-.. ..+.+.+.+.+.. ...++.|..+|.++|+.+.
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAE-YGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTT-TCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccc-cCCCCEEEEEECCCCcEEE
Confidence            355677777665 689999999988765543 1      1100001 1233433332110 0126899999999999998


Q ss_pred             EEecCCce---------------------------------EEEEEcC--CeEEEEECC--------------------e
Q 019349           90 ELNFLTSI---------------------------------LAVRLNK--KRLVIVLRE--------------------K  114 (342)
Q Consensus        90 ~~~~~~~v---------------------------------~~i~~~~--~~~~~~~d~--------------------~  114 (342)
                      .+......                                 ..+.+++  +.+++...+                    .
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~s  284 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLAS  284 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTE
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEE
Confidence            87642211                                 1344543  344444422                    4


Q ss_pred             EEEEECCCCceeeEEeCCCCC-------ceEEEEeeCCCc---cEEEEeCCCCccEEEEEEccCCceeEEEeccc-----
Q 019349          115 TYIYDANTLAILDTIDTVPNL-------KGLCAFSPSLNA---CFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ-----  179 (342)
Q Consensus       115 i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~---~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~-----  179 (342)
                      |..+|..+++.+..++...+.       .....+....++   ..++.+.  .+|.|.++|..+++.+..++...     
T Consensus       285 v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~~~~  362 (677)
T 1kb0_A          285 IVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP--KNGFFFVLDRTNGKFISAKNFVPVNWAS  362 (677)
T ss_dssp             EEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred             EEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC--CCCEEEEEECCCCCEeccccccccCccc
Confidence            999999999999888764331       112222221234   4566555  68999999999999876654211     


Q ss_pred             ------CCe------------------------eEEEECCCCCEEEEEeCC-----------------------------
Q 019349          180 ------APL------------------------AAIVLSSNGMYIATASEQ-----------------------------  200 (342)
Q Consensus       180 ------~~v------------------------~~i~~s~dg~~lat~s~d-----------------------------  200 (342)
                            .++                        ..++|+|++.++++.+.+                             
T Consensus       363 ~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  442 (677)
T 1kb0_A          363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNT  442 (677)
T ss_dssp             EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCC
T ss_pred             ccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeeccccccccccccccccccccccc
Confidence                  111                        157899998888876542                             


Q ss_pred             --------------CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          201 --------------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       201 --------------g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                                    |. +..||+.+|+.+.++..+   ..+.+..++.++.   +++.++.||.+++||+++++...
T Consensus       443 g~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~---~~~~~g~~~~~g~---~v~~g~~dg~l~a~D~~tG~~lw  512 (677)
T 1kb0_A          443 AKFFNAEPPKSKPFGR-LLAWDPVAQKAAWSVEHV---SPWNGGTLTTAGN---VVFQGTADGRLVAYHAATGEKLW  512 (677)
T ss_dssp             CEEECSSCCCSCCEEE-EEEEETTTTEEEEEEEES---SSCCCCEEEETTT---EEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccccCCCCCccE-EEEEeCCCCcEEeecCCC---CCCcCcceEeCCC---EEEEECCCCcEEEEECCCCceee
Confidence                          55 579999999998877533   2244455677777   88899999999999999887643

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.10  E-value=5.4e-07  Score=81.82  Aligned_cols=193  Identities=8%  Similarity=0.064  Sum_probs=123.9

Q ss_pred             CCeEEEEcCCCCCCCCCCeEEEEECCCC----cEEEEEe---c----C-CceEEEEEcCCeEEEEE--C------CeEEE
Q 019349           58 SSLLAIVGAGEQPSLSPRRLCLFNTTTG----TALRELN---F----L-TSILAVRLNKKRLVIVL--R------EKTYI  117 (342)
Q Consensus        58 ~~~~~~~~~g~~~~~~d~~i~iwd~~~~----~~~~~~~---~----~-~~v~~i~~~~~~~~~~~--d------~~i~i  117 (342)
                      .+++.+.+.      .+++|.+.|+.+.    +.+..++   .    . .....+.+.++++++..  +      +.+.+
T Consensus        95 r~~l~v~~l------~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdGi~Vs~~g~~~g~~~g~v~v  168 (462)
T 2ece_A           95 RRFLIVPGL------RSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDAIYISALGNEEGEGPGGILM  168 (462)
T ss_dssp             SCEEEEEBT------TTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSCEEEEEEEETTSCSCCEEEE
T ss_pred             CCEEEEccC------CCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCeEEEEcCCCcCCCCCCeEEE
Confidence            345555554      5889999999765    5555563   1    1 13456777888866654  3      58999


Q ss_pred             EECCCCceeeEEeCCCCCce-EEEEeeCCCccEEEEeCC-----------------CCccEEEEEEccCCceeEEEecc-
Q 019349          118 YDANTLAILDTIDTVPNLKG-LCAFSPSLNACFLAVPAS-----------------TTKGSVLVYNVMELHSHCEIDAH-  178 (342)
Q Consensus       118 ~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-----------------~~~g~i~iwd~~~~~~~~~~~~h-  178 (342)
                      +|..+.+.+.++.....+.. -..+-++|++..++++.-                 ....+|.+||+.+++.+.++..- 
T Consensus       169 lD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~  248 (462)
T 2ece_A          169 LDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGE  248 (462)
T ss_dssp             ECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCT
T ss_pred             EECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCC
Confidence            99999999998865433321 222444566667777630                 02588999999998888877642 


Q ss_pred             -cCCeeEEEE--CCCCCEEEEEeC-----CCcEEEEEEcCCCee--EEE--eccCc--C------------ceeEEEEEE
Q 019349          179 -QAPLAAIVL--SSNGMYIATASE-----QGTIIRVFLVSEATK--SYS--FRRGT--Y------------PSTIFSLSF  232 (342)
Q Consensus       179 -~~~v~~i~~--s~dg~~lat~s~-----dg~~irlwd~~~~~~--~~~--~~~~~--~------------~~~v~~l~f  232 (342)
                       ......|.|  +|+|+++..+++     ....|-+|....|+.  +..  +....  .            ......|.+
T Consensus       249 ~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~l  328 (462)
T 2ece_A          249 ENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDI  328 (462)
T ss_dssp             TEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEE
T ss_pred             CCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEE
Confidence             233455656  999999888886     443344655544431  111  11100  0            123677899


Q ss_pred             ecCCCcccEEEEEeC-CCcEEEEecCCC
Q 019349          233 GQSMQFQDILVATSS-SGSLHVFSPGFA  259 (342)
Q Consensus       233 s~d~~~~~~l~~~s~-dg~i~vwd~~~~  259 (342)
                      |||++   +|.++.. .++|.+||+...
T Consensus       329 S~DGr---fLYVSnrg~d~VavfdV~d~  353 (462)
T 2ece_A          329 SLDDK---FLYLSLWGIGEVRQYDISNP  353 (462)
T ss_dssp             CTTSC---EEEEEETTTTEEEEEECSST
T ss_pred             CCCCC---EEEEEeCCCCEEEEEEecCC
Confidence            99999   6766654 689999999744

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.10  E-value=7.4e-08  Score=84.24  Aligned_cols=220  Identities=10%  Similarity=0.012  Sum_probs=134.0

Q ss_pred             CCeEEEEEcCCCCE-EEEEcCC-cEEEEeCCCCcE-EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            8 YPVFFVSFNQDNSG-FALSTKD-GFKIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         8 ~~V~~l~fs~d~~~-la~g~~~-g~~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      .-.....|+|+|+. +.++..+ .+..|+.. ++. .+.........+.+..+++.+ ++..      ..+.|.+||.. 
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~~~~~~~~~~~~~gl~~d~dG~l~-v~~~------~~~~v~~~~~~-  115 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GTVDVLLDATAFTNGNAVDAQQRLV-HCEH------GRRAITRSDAD-  115 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SCEEEEEESCSCEEEEEECTTSCEE-EEET------TTTEEEEECTT-
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CCEEEEeCCCCccceeeECCCCCEE-EEEC------CCCEEEEECCC-
Confidence            34568899999994 4566554 47888874 443 333333445556666666644 3332      25789999975 


Q ss_pred             CcEEEEEe-cC----CceEEEEEcCCeEEEEEC--------------------CeEEEEECCCCceeeEEeCCCCCceEE
Q 019349           85 GTALRELN-FL----TSILAVRLNKKRLVIVLR--------------------EKTYIYDANTLAILDTIDTVPNLKGLC  139 (342)
Q Consensus        85 ~~~~~~~~-~~----~~v~~i~~~~~~~~~~~d--------------------~~i~i~d~~~~~~~~~~~~~~~~~~~~  139 (342)
                      ++...... ..    ..+.++.+++++.+.++|                    +.|+.||..+++..... .   .....
T Consensus       116 g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~---~~~p~  191 (305)
T 3dr2_A          116 GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D---LDHPN  191 (305)
T ss_dssp             SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E---ESSEE
T ss_pred             CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c---CCCCc
Confidence            55332221 11    245678888887666642                    35777777666543322 1   11234


Q ss_pred             EEeeCCCccEEEEeCCCC----ccEEEEEEccCCce--eEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349          140 AFSPSLNACFLAVPASTT----KGSVLVYNVMELHS--HCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       140 ~~~~~~~~~~l~~~~~~~----~g~i~iwd~~~~~~--~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~  212 (342)
                      .++++|++..|.++....    .+.|.+||+.....  ...+ .........|+++++|++.++ ..+|  |.+|+. ++
T Consensus       192 gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~-~~~g--v~~~~~-~g  267 (305)
T 3dr2_A          192 GLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSS-SGTG--VCVFDS-DG  267 (305)
T ss_dssp             EEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEEC-CSSE--EEEECT-TS
T ss_pred             ceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEe-cCCc--EEEECC-CC
Confidence            566778887666665311    26899999876541  1111 112344567899999995554 4554  469998 57


Q ss_pred             eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc
Q 019349          213 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS  250 (342)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~  250 (342)
                      +.+..+...   ..+.+++|+|+++   .|..++.++.
T Consensus       268 ~~~~~~~~~---~~~~~~~f~~d~~---~L~it~~~~l  299 (305)
T 3dr2_A          268 QLLGHIPTP---GTASNCTFDQAQQ---RLFITGGPCL  299 (305)
T ss_dssp             CEEEEEECS---SCCCEEEECTTSC---EEEEEETTEE
T ss_pred             CEEEEEECC---CceeEEEEeCCCC---EEEEEcCCeE
Confidence            777766533   2478899999987   7887777643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.10  E-value=1.5e-09  Score=97.53  Aligned_cols=228  Identities=14%  Similarity=0.043  Sum_probs=142.7

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEeCCCCcEEEEEeeC---------CEEEEEEcCCCCeEEEEcCCCCCC
Q 019349           12 FVSFNQDNSGFALST-----------KDGFKIFDSSTGRLCYERAVG---------AFSIVEMLYSSSLLAIVGAGEQPS   71 (342)
Q Consensus        12 ~l~fs~d~~~la~g~-----------~~g~~v~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~   71 (342)
                      .+.|+||+++|.++.           ++.+.+||+.+++.+.+...+         .-..+.+.++++++.++..+    
T Consensus        69 ~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~----  144 (368)
T 1mda_H           69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG----  144 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS----
T ss_pred             ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccC----
Confidence            799999999988875           244799999999887765432         12245667777777766531    


Q ss_pred             CCCCeEEE--EECCCCcEEEEEecCCceEEEEEcCCeEEEEE--CCeEEEEECCC-----Cceee----EEeCCCCCceE
Q 019349           72 LSPRRLCL--FNTTTGTALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANT-----LAILD----TIDTVPNLKGL  138 (342)
Q Consensus        72 ~~d~~i~i--wd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~-----~~~~~----~~~~~~~~~~~  138 (342)
                       ..+.+.+  +|+.+   +.++..+..+ .+...+...+++.  |+++.+.++.+     ++...    .+.....+.  
T Consensus       145 -~~~~v~V~~iD~~t---v~~i~v~~~~-~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~--  217 (368)
T 1mda_H          145 -SSAAAGLSVPGASD---DQLTKSASCF-HIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA--  217 (368)
T ss_dssp             -SSCEEEEEETTTEE---EEEEECSSCC-CCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE--
T ss_pred             -CCCeEEEEEEchhh---ceEEECCCce-EEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc--
Confidence             2467888  99877   5555443321 1223333333333  77788888876     33221    111122222  


Q ss_pred             EEEeeCCCccEEEEeCCCCccEEEEEEccCCc--eeEEEec-------c---cCCeeEEEECCCCCEEEEEeC-C-----
Q 019349          139 CAFSPSLNACFLAVPASTTKGSVLVYNVMELH--SHCEIDA-------H---QAPLAAIVLSSNGMYIATASE-Q-----  200 (342)
Q Consensus       139 ~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~~-------h---~~~v~~i~~s~dg~~lat~s~-d-----  200 (342)
                       +   .+++..+++..  . +.|.+.|+....  .+..+..       +   ......++|+|||+.|..+.. .     
T Consensus       218 -~---~~~~~~~~~vs--~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~  290 (368)
T 1mda_H          218 -Q---ANYPGMLVWAV--A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             -E---ETTTTEEEECB--S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             -c---cccCCEEEEEc--C-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCccc
Confidence             2   33344555555  4 789999986532  2222211       1   112223789999998886543 2     


Q ss_pred             ---CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCCCCCCC
Q 019349          201 ---GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAINQR  263 (342)
Q Consensus       201 ---g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~~~~  263 (342)
                         +.+. ++|+.+++.+.++..+   .....|+|+||++  .++++.. .+++|.|+|+++.+..+
T Consensus       291 ~~~~~~~-ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~--~l~va~~~~~~~VsVID~~t~kvv~  351 (368)
T 1mda_H          291 AAAENTS-SVTASVGQTSGPISNG---HDSDAIIAAQDGA--SDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             SCEEEEE-EEESSSCCEEECCEEE---EEECEEEECCSSS--CEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             ccCCCEE-EEECCCCeEEEEEECC---CCcceEEECCCCC--EEEEEccCCCCeEEEEECCCCcEEE
Confidence               2444 9999999998887543   2478899999997  1455555 58999999999877543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.09  E-value=1.8e-08  Score=98.24  Aligned_cols=190  Identities=17%  Similarity=0.106  Sum_probs=116.3

Q ss_pred             CCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEE-----------EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFS-----------IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus        19 ~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      +..|.+++.++ +.-+|..+|+++.+.....-.           ..........+.+.+       .++.|..+|.++|+
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~-------~dg~l~AlDa~TG~  142 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGV-------LDGRLEAIDAKTGQ  142 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-------TTSEEEEEETTTCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEc-------cCCEEEEEECCCCC
Confidence            44566666554 688999999988765432100           000011233444443       38899999999999


Q ss_pred             EEEEEecC-C-----ceE-EEEEcCCeEEEEE-------CCeEEEEECCCCceeeEEeCCC-CCc---------------
Q 019349           87 ALRELNFL-T-----SIL-AVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVP-NLK---------------  136 (342)
Q Consensus        87 ~~~~~~~~-~-----~v~-~i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~-~~~---------------  136 (342)
                      .+.+.... .     .+. +-.+..+.+++..       ++.|+.||..+++.+..+.... .+.               
T Consensus       143 ~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  222 (689)
T 1yiq_A          143 RAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW  222 (689)
T ss_dssp             EEEEEECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred             EeeeecCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence            99887653 1     111 1122344454443       4789999999999988876421 110               


Q ss_pred             ----------e---EEEEeeCCCccEEEEeCCCCcc-------------------EEEEEEccCCceeEEEec--cc---
Q 019349          137 ----------G---LCAFSPSLNACFLAVPASTTKG-------------------SVLVYNVMELHSHCEIDA--HQ---  179 (342)
Q Consensus       137 ----------~---~~~~~~~~~~~~l~~~~~~~~g-------------------~i~iwd~~~~~~~~~~~~--h~---  179 (342)
                                +   ....+.+++...+.++.  .++                   .|..+|..+++.+-.++.  |.   
T Consensus       223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~--~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd  300 (689)
T 1yiq_A          223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGV--GNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWD  300 (689)
T ss_dssp             CSSTHHHHCEECCCCSCEEEETTTTEEEEEC--CCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSC
T ss_pred             CCceeeecCCCCccccceeEcCCCCEEEEeC--CCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCccccc
Confidence                      0   01234445555666554  344                   499999999998877654  32   


Q ss_pred             ----CCeeEEEECCCCC---EEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349          180 ----APLAAIVLSSNGM---YIATASEQGTIIRVFLVSEATKSYSF  218 (342)
Q Consensus       180 ----~~v~~i~~s~dg~---~lat~s~dg~~irlwd~~~~~~~~~~  218 (342)
                          .++....+..+|+   .|+.++.+|.+ +++|..+|+.+...
T Consensus       301 ~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l-~~lD~~tG~~l~~~  345 (689)
T 1yiq_A          301 YTATQHMILAELPIDGKPRKVLMQAPKNGFF-YVIDRATGELLSAK  345 (689)
T ss_dssp             CCCCSCEEEEEEEETTEEEEEEEECCTTSEE-EEEETTTCCEEEEE
T ss_pred             ccCCCCcEEEeeccCCcEEEEEEEECCCCeE-EEEECCCCCEeccc
Confidence                2222223333665   78899999975 79999999987543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.09  E-value=2.1e-07  Score=79.31  Aligned_cols=176  Identities=13%  Similarity=0.050  Sum_probs=129.9

Q ss_pred             CCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccE
Q 019349           74 PRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF  149 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  149 (342)
                      ++.|.+.|+.+++.+.++..+.  ....+++.++.++++.  ++.+.++|..+++.+.++... .+.+ ..+++++  ..
T Consensus        43 ~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~g-~glt~Dg--~~  118 (266)
T 2iwa_A           43 RSSVRQVALQTGKVENIHKMDDSYFGEGLTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKDG-WGLATDG--KI  118 (266)
T ss_dssp             TCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSSC-CEEEECS--SS
T ss_pred             CCEEEEEECCCCCEEEEEecCCCcceEEEEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCCe-EEEEECC--CE
Confidence            6899999999999999887654  3457788888888888  789999999999999999765 2333 3466654  34


Q ss_pred             EEEeCCCCccEEEEEEccCCceeEEEeccc--C---CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc-C
Q 019349          150 LAVPASTTKGSVLVYNVMELHSHCEIDAHQ--A---PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-Y  223 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~--~---~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~-~  223 (342)
                      +..+.  .++.|.++|..+.+.+.+++--.  .   .++.+.|. +|...+....++. |.+.|..+++.+..+..+. .
T Consensus       119 l~vs~--gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~-V~vID~~tg~V~~~I~~~g~~  194 (266)
T 2iwa_A          119 LYGSD--GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDC-IARISAKDGTLLGWILLPNLR  194 (266)
T ss_dssp             EEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE-EEEEETTTCCEEEEEECHHHH
T ss_pred             EEEEC--CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCe-EEEEECCCCcEEEEEECCCcc
Confidence            44444  36899999999998888776321  2   36788888 7755555444555 5799999999988885421 0


Q ss_pred             ----------ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          224 ----------PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       224 ----------~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                                ....+.|+|+|+++  .+++++...+++.+.++...
T Consensus       195 ~~~~~~~~~~~~v~nGIa~~~~~~--~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          195 KKLIDEGFRDIDVLNGIAWDQENK--RIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             HHHHHTTCTTCCCEEEEEEETTTT--EEEEEETTCSEEEEEEEEEC
T ss_pred             cccccccccccCceEEEEEcCCCC--EEEEECCCCCeEEEEEEecc
Confidence                      12468999999986  26666667889999998654

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.08  E-value=2.7e-07  Score=78.65  Aligned_cols=191  Identities=10%  Similarity=0.003  Sum_probs=130.1

Q ss_pred             eEEEEEcCCCCEEEEEc---CCcEEEEeCCCCcEEEEEeeCC--EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349           10 VFFVSFNQDNSGFALST---KDGFKIFDSSTGRLCYERAVGA--FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~---~~g~~v~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      ...++|++|+.+.++.+   ++.++++|+.+++.+.....+.  .. ..+...++.+..+..      .++.+.++|..+
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fg-eGi~~~g~~lyv~t~------~~~~v~viD~~t   95 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFG-EGLTLLNEKLYQVVW------LKNIGFIYDRRT   95 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCE-EEEEEETTEEEEEET------TCSEEEEEETTT
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcce-EEEEEeCCEEEEEEe------cCCEEEEEECCC
Confidence            57899999875444433   2458999999999877654322  21 122233556666654      489999999999


Q ss_pred             CcEEEEEecC-CceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCc---eEEEEeeCCCccEEEEeCCCCcc
Q 019349           85 GTALRELNFL-TSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLK---GLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        85 ~~~~~~~~~~-~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      .+.+.++... ..-..++.....++++. ++++.++|..+.+.+..+....++.   ....+.+. ++...+...  .++
T Consensus        96 ~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~--~~~  172 (266)
T 2iwa_A           96 LSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIW--QTD  172 (266)
T ss_dssp             TEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET--TSS
T ss_pred             CcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecC--CCC
Confidence            9999998766 44456777777777665 6799999999999988887543321   12333443 454444443  468


Q ss_pred             EEEEEEccCCceeEEEeccc-------------CCeeEEEECCCCCEEEEEe-CCCcEEEEEEcCC
Q 019349          160 SVLVYNVMELHSHCEIDAHQ-------------APLAAIVLSSNGMYIATAS-EQGTIIRVFLVSE  211 (342)
Q Consensus       160 ~i~iwd~~~~~~~~~~~~h~-------------~~v~~i~~s~dg~~lat~s-~dg~~irlwd~~~  211 (342)
                      .|.+.|..+++.+..+....             ...+.|+|+|+++.|..++ ..++ +.+.++..
T Consensus       173 ~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~-v~~i~l~~  237 (266)
T 2iwa_A          173 CIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPK-LFEIKLHL  237 (266)
T ss_dssp             EEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSE-EEEEEEEE
T ss_pred             eEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCe-EEEEEEec
Confidence            99999999999988886321             3568999999987655554 4454 45666644

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.04  E-value=5.4e-08  Score=82.15  Aligned_cols=172  Identities=7%  Similarity=-0.037  Sum_probs=123.5

Q ss_pred             CCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCce--EEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeC
Q 019349           56 YSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDT  131 (342)
Q Consensus        56 ~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~  131 (342)
                      ++.+.+..+++      .++.|+.+|+++++.+.++ .+...  ..+++.++.++++.  ++.+.+||..+++.+.++..
T Consensus        62 ~~~~~Ly~stG------~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           62 FHQGHFFESTG------HQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             EETTEEEEEET------TTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             EECCEEEEEcC------CCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            34556655555      4677999999999999888 76654  45888899999988  88999999999999999987


Q ss_pred             CCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec--ccC---CeeEEEECCCCCEEEEEeCCCcEEEE
Q 019349          132 VPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA--HQA---PLAAIVLSSNGMYIATASEQGTIIRV  206 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~--h~~---~v~~i~~s~dg~~lat~s~dg~~irl  206 (342)
                      ....   .+++++  +..|..+.  .++.|.++|..+.+.+.+++.  +..   .++.+.|. +|+..|....++. |.+
T Consensus       135 ~~eG---wGLt~D--g~~L~vSd--Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~-I~v  205 (268)
T 3nok_A          135 SGEG---WGLCYW--NGKLVRSD--GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSD-VLE  205 (268)
T ss_dssp             SSCC---CCEEEE--TTEEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSE-EEE
T ss_pred             CCce---eEEecC--CCEEEEEC--CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCe-EEE
Confidence            5443   334444  34555554  368999999999998888764  222   35667776 7765544434554 679


Q ss_pred             EEcCCCeeEEEeccCc-----------CceeEEEEEEecCCCcccEEEEEe
Q 019349          207 FLVSEATKSYSFRRGT-----------YPSTIFSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       207 wd~~~~~~~~~~~~~~-----------~~~~v~~l~fs~d~~~~~~l~~~s  246 (342)
                      .|.++|+.+..+....           .....+.||++|+++   .|.+++
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~---rlfVTG  253 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSG---RIFMTG  253 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTC---CEEEEE
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCC---EEEEeC
Confidence            9999999888775321           113478999999876   455444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.04  E-value=4.4e-07  Score=82.39  Aligned_cols=226  Identities=8%  Similarity=0.028  Sum_probs=137.5

Q ss_pred             c--CCCCEEEEEcCC--cEEEEeCCCC----cEEEEEe------eCCE---EEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349           16 N--QDNSGFALSTKD--GFKIFDSSTG----RLCYERA------VGAF---SIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus        16 s--~d~~~la~g~~~--g~~v~d~~~~----~~~~~~~------~~~~---~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      +  +++++|.+.+..  .+.|+|+.+.    ++....+      ..+.   -.+.+.+++ .++.+.++..+ -..+.|.
T Consensus        90 ~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g-~~~g~v~  167 (462)
T 2ece_A           90 KPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEG-EGPGGIL  167 (462)
T ss_dssp             CTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTS-CSCCEEE
T ss_pred             CCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCC-CCCCeEE
Confidence            7  889998876543  3789998644    3333221      0011   123444555 33322221111 1247899


Q ss_pred             EEECCCCcEEEEEecCC----ceEEEEEcCCe-EEEEE---------------------CCeEEEEECCCCceeeEEeCC
Q 019349           79 LFNTTTGTALRELNFLT----SILAVRLNKKR-LVIVL---------------------REKTYIYDANTLAILDTIDTV  132 (342)
Q Consensus        79 iwd~~~~~~~~~~~~~~----~v~~i~~~~~~-~~~~~---------------------d~~i~i~d~~~~~~~~~~~~~  132 (342)
                      +.|.++++.+.++....    --.++.+++++ .++.+                     +++|.+||+.+++.+.++...
T Consensus       168 vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg  247 (462)
T 2ece_A          168 MLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLG  247 (462)
T ss_dssp             EECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESC
T ss_pred             EEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecC
Confidence            99999999999886432    23456666654 33333                     479999999999888888775


Q ss_pred             CCCceE--EEEeeCCCccEEEEeCC----CCccEEEEEEccCCc--eeEEE--ecc----------------cCCeeEEE
Q 019349          133 PNLKGL--CAFSPSLNACFLAVPAS----TTKGSVLVYNVMELH--SHCEI--DAH----------------QAPLAAIV  186 (342)
Q Consensus       133 ~~~~~~--~~~~~~~~~~~l~~~~~----~~~g~i~iwd~~~~~--~~~~~--~~h----------------~~~v~~i~  186 (342)
                      ......  +.+.++|++.++.+...    +.+++|.+|....++  ..+.+  ...                ......|.
T Consensus       248 ~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~  327 (462)
T 2ece_A          248 EENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDID  327 (462)
T ss_dssp             TTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEE
T ss_pred             CCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEE
Confidence            321222  23555777766554431    025788877655442  11111  110                13468899


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEEcCC---CeeEEEeccCcC---------c---eeEEEEEEecCCCcccEEEEEe
Q 019349          187 LSSNGMYIATASEQGTIIRVFLVSE---ATKSYSFRRGTY---------P---STIFSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       187 ~s~dg~~lat~s~dg~~irlwd~~~---~~~~~~~~~~~~---------~---~~v~~l~fs~d~~~~~~l~~~s  246 (342)
                      +|+||++|..+......|.++|+..   .+.+..+..+..         .   ..-..++++|||+   +|.++.
T Consensus       328 lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk---~LyVaN  399 (462)
T 2ece_A          328 ISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGR---RVYVTN  399 (462)
T ss_dssp             ECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSS---EEEEEC
T ss_pred             ECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCC---EEEEEc
Confidence            9999999999887655678999853   355555544311         0   0246789999999   888888

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.04  E-value=1.1e-06  Score=77.49  Aligned_cols=189  Identities=9%  Similarity=-0.041  Sum_probs=120.9

Q ss_pred             EEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe-EEEEECCeEEEEECCCCceeeEEeC
Q 019349           53 EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-LVIVLREKTYIYDANTLAILDTIDT  131 (342)
Q Consensus        53 ~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~~d~~i~i~d~~~~~~~~~~~~  131 (342)
                      .+..+.+.++++..      ..+.|..||..+++. ..+..+..+.++.++++. ++++..+.|++||..+++.......
T Consensus        55 ~~~~~~~~l~~~d~------~~~~i~~~d~~~~~~-~~~~~~~~v~~i~~~~dg~l~v~~~~gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           55 TFDPASGTAWWFNI------LERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEETTTTEEEEEEG------GGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECS
T ss_pred             eEeCCCCEEEEEEC------CCCEEEEEECCCCcE-EEEECCCcceEEEEeCCCeEEEEECCCEEEEECCCCcEEEEeeC
Confidence            44455556666654      367999999987754 345566788999987765 5555577899999988765432222


Q ss_pred             CC--CCceEEEEeeCCCccEEEEeCCC----CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe-CCCcEE
Q 019349          132 VP--NLKGLCAFSPSLNACFLAVPAST----TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS-EQGTII  204 (342)
Q Consensus       132 ~~--~~~~~~~~~~~~~~~~l~~~~~~----~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s-~dg~~i  204 (342)
                      ..  ....+..+..++++.+.+.....    ..+.|..+|  +++. ..+..+....+.++|+|||+.|+.+. .++. |
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~-~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~-I  203 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKV-TKLFADISIPNSICFSPDGTTGYFVDTKVNR-L  203 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEE-EEEEEEESSEEEEEECTTSCEEEEEETTTCE-E
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcE-EEeeCCCcccCCeEEcCCCCEEEEEECCCCE-E
Confidence            11  12345677778888766543210    125566666  4443 33333445678999999998776654 4455 5


Q ss_pred             EEEEcC--CC-e-----eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          205 RVFLVS--EA-T-----KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       205 rlwd~~--~~-~-----~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      .+||+.  +| +     .+..+..  .......+++.+++.   ++++...++.|.+||.+
T Consensus       204 ~~~d~~~~~Gl~~~~~~~~~~~~~--~~~~p~gi~~d~~G~---lwva~~~~~~v~~~d~~  259 (326)
T 2ghs_A          204 MRVPLDARTGLPTGKAEVFIDSTG--IKGGMDGSVCDAEGH---IWNARWGEGAVDRYDTD  259 (326)
T ss_dssp             EEEEBCTTTCCBSSCCEEEEECTT--SSSEEEEEEECTTSC---EEEEEETTTEEEEECTT
T ss_pred             EEEEcccccCCcccCceEEEECCC--CCCCCCeeEECCCCC---EEEEEeCCCEEEEECCC
Confidence            799986  56 3     1222221  123467899999998   77777677899999873

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.03  E-value=6.5e-11  Score=106.90  Aligned_cols=171  Identities=11%  Similarity=0.029  Sum_probs=91.8

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcCCe-EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC-CccE
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL-NACF  149 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  149 (342)
                      ++.|+.||..+|+.+.++.. ..+.+..+..+. ++++.  |+.++.||..+++.+..+..+..  .....++.- .+..
T Consensus        18 dg~v~a~d~~tG~~~W~~~~-~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~--~~~~~sp~~~~~~~   94 (369)
T 2hz6_A           18 DGSLHAVSKRTGSIKWTLKE-DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIP--ELVQASPCRSSDGI   94 (369)
T ss_dssp             TSEEEEEETTTCCEEEEEEC-CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHH--HHHTTCSCC-----
T ss_pred             CCEEEEEECCCCCEEEEecC-CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCc--cccccCceEecCCE
Confidence            78999999999999998877 544443333333 44443  88999999998877665533211  000001110 1224


Q ss_pred             EEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349          150 LAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  229 (342)
Q Consensus       150 l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~  229 (342)
                      +++++  .+|.|..||..+++.+..+..+.    .+.++|++..|++++.|+.+ +.||.++|+.+.++...    ....
T Consensus        95 v~~g~--~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v-~a~d~~tG~~~W~~~~~----~~~~  163 (369)
T 2hz6_A           95 LYMGK--KQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTI-TMYDTKTRELRWNATYF----DYAA  163 (369)
T ss_dssp             CCCCE--EEEEEEEECCC--------------------------EEEEEEEEEE-ECCCSSSSSCCCEEEEE----EECC
T ss_pred             EEEEe--CCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEE-EEEECCCCCEEEeEecc----cccC
Confidence            44444  58999999999999887776554    24567788999999999875 79999999887665421    1223


Q ss_pred             EEEecCC---CcccEEEEEeCCCcEEEEecCCCCC
Q 019349          230 LSFGQSM---QFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       230 l~fs~d~---~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      .+++++.   .   .+++++.||.|+.||.++++.
T Consensus       164 ~~~~~~~~~~~---~v~~~~~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          164 SLPEDDVDYKM---SHFVSNGDGLVVTVDSESGDV  195 (369)
T ss_dssp             BCCCCCTTCCC---CEEEEETSCEEEEECTTTCCE
T ss_pred             ccccCCccccc---eEEEECCCCEEEEEECCCCcE
Confidence            3444432   3   577889999999999887653

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.03  E-value=1.5e-07  Score=79.49  Aligned_cols=161  Identities=9%  Similarity=0.084  Sum_probs=118.6

Q ss_pred             CeEEEEECCCCcEEEEEecCCce--EEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEE
Q 019349           75 RRLCLFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFL  150 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  150 (342)
                      ..|+.+|+++++.+.++..+...  ..+.+..+.++++.  ++.+.+||..+.+.+.++......-   +++++  +..|
T Consensus        65 S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~---glt~d--g~~L  139 (262)
T 3nol_A           65 SSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW---GLTHN--DQYL  139 (262)
T ss_dssp             EEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC---CEEEC--SSCE
T ss_pred             ceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce---EEecC--CCEE
Confidence            48999999999999999887655  55788889999988  8899999999999999998754432   34444  3455


Q ss_pred             EEeCCCCccEEEEEEccCCceeEEEecc--c---CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc---
Q 019349          151 AVPASTTKGSVLVYNVMELHSHCEIDAH--Q---APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT---  222 (342)
Q Consensus       151 ~~~~~~~~g~i~iwd~~~~~~~~~~~~h--~---~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~---  222 (342)
                      ..+.  .++.|.++|..+.+.+.+++..  .   ..++.+.+. +|+..|..-.++. |.+.|.++|+.+..+....   
T Consensus       140 ~~Sd--Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~-I~vIDp~tG~V~~~Id~~~L~~  215 (262)
T 3nol_A          140 IMSD--GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNK-IVRIDPETGKVTGIIDLNGILA  215 (262)
T ss_dssp             EECC--SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSE-EEEECTTTCBEEEEEECTTGGG
T ss_pred             EEEC--CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCe-EEEEECCCCcEEEEEECCcCcc
Confidence            5544  3578999999999988887642  2   335567776 6765544444555 5799999999888775321   


Q ss_pred             -------CceeEEEEEEecCCCcccEEEEEeC
Q 019349          223 -------YPSTIFSLSFGQSMQFQDILVATSS  247 (342)
Q Consensus       223 -------~~~~v~~l~fs~d~~~~~~l~~~s~  247 (342)
                             .....+.|||+|+++   .|.+++.
T Consensus       216 ~~~~~~~~~~vlNGIA~dp~~~---~lfVTGK  244 (262)
T 3nol_A          216 EAGPLPSPIDVLNGIAWDKEHH---RLFVTGK  244 (262)
T ss_dssp             GSCSCCSSCCCEEEEEEETTTT---EEEEEET
T ss_pred             ccccccCcCCceEEEEEcCCCC---EEEEECC
Confidence                   112478999999987   6666664

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.99  E-value=4.6e-07  Score=75.74  Aligned_cols=175  Identities=13%  Similarity=0.079  Sum_probs=123.4

Q ss_pred             CCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCce--EEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCC
Q 019349           57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTV  132 (342)
Q Consensus        57 ~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~  132 (342)
                      +.+.+...++.    .....|+.+|+++++.+.++..+...  ..+++..+.++++.  ++.+.+||..+.+.+.++...
T Consensus        29 ~~~~LyestG~----~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~  104 (243)
T 3mbr_X           29 LRGHLYESTGE----TGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYP  104 (243)
T ss_dssp             ETTEEEEEECC----TTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECS
T ss_pred             ECCEEEEECCC----CCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCC
Confidence            34555444442    12468999999999999999887654  56677888998888  889999999999999999875


Q ss_pred             CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecc--c---CCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349          133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAH--Q---APLAAIVLSSNGMYIATASEQGTIIRVF  207 (342)
Q Consensus       133 ~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h--~---~~v~~i~~s~dg~~lat~s~dg~~irlw  207 (342)
                      ...   .++++++  ..|..+.  .++.|.++|..+.+.+.+++-.  .   ..++.+.+. +|+..|..-.+.. |.+.
T Consensus       105 ~~G---wglt~dg--~~L~vSd--gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~-I~vI  175 (243)
T 3mbr_X          105 GEG---WALTSDD--SHLYMSD--GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSR-IARI  175 (243)
T ss_dssp             SCC---CEEEECS--SCEEEEC--SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTE-EEEE
T ss_pred             CCc---eEEeeCC--CEEEEEC--CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCe-EEEE
Confidence            543   3445443  3444444  3688999999999988877642  2   245666665 6665544434544 5799


Q ss_pred             EcCCCeeEEEeccCc-----------CceeEEEEEEecCCCcccEEEEEeC
Q 019349          208 LVSEATKSYSFRRGT-----------YPSTIFSLSFGQSMQFQDILVATSS  247 (342)
Q Consensus       208 d~~~~~~~~~~~~~~-----------~~~~v~~l~fs~d~~~~~~l~~~s~  247 (342)
                      |.++|+.+..+....           .....+.||++|++.   .|.+++.
T Consensus       176 Dp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~---~lfVTGK  223 (243)
T 3mbr_X          176 DPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHD---RLFVTGK  223 (243)
T ss_dssp             CTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTT---EEEEEET
T ss_pred             ECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCC---EEEEECC
Confidence            999999888775321           112478999999887   6666653

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.95  E-value=5.5e-07  Score=87.76  Aligned_cols=233  Identities=10%  Similarity=0.079  Sum_probs=143.3

Q ss_pred             CCEEEEEcCCc-EEEEeCCCCcEEEEEeeC-------CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVG-------AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (342)
Q Consensus        19 ~~~la~g~~~g-~~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~   90 (342)
                      +..+++++.++ +..+|..+|+++......       .+...-... .+.+++...+.. ...++.|..||.++|+.+..
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVV-NGKVVIGNGGAE-FGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEE-TTEEEECCBCTT-TCCBCEEEEEETTTCCEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEE-CCEEEEEeCCCc-cCCCCEEEEEECCCCcEEEE
Confidence            45677777666 689999999988665432       010000001 233333222100 01368999999999999988


Q ss_pred             EecC-C-c------------------------------eEEEEEcC--CeEEEEE-CC-------------------eEE
Q 019349           91 LNFL-T-S------------------------------ILAVRLNK--KRLVIVL-RE-------------------KTY  116 (342)
Q Consensus        91 ~~~~-~-~------------------------------v~~i~~~~--~~~~~~~-d~-------------------~i~  116 (342)
                      +... . +                              ...+.+++  +.+++.. ++                   .|.
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            7531 0 0                              01345544  3444443 32                   399


Q ss_pred             EEECCCCceeeEEeCCCCC-------c--eEEEEeeCCC-ccEEEEeCCCCccEEEEEEccCCceeEEEeccc-C-----
Q 019349          117 IYDANTLAILDTIDTVPNL-------K--GLCAFSPSLN-ACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ-A-----  180 (342)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~-------~--~~~~~~~~~~-~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~-~-----  180 (342)
                      .+|..+++.+..++...+.       .  .+..+...+. ...++.+.  .+|.++++|..+++.+...+... .     
T Consensus       279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~  356 (689)
T 1yiq_A          279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP--KNGFFYVIDRATGELLSAKGIVPQSWTKGM  356 (689)
T ss_dssp             EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred             EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC--CCCeEEEEECCCCCEecccccccccccccc
Confidence            9999999999888764321       1  1112222221 12455555  68999999999998874332110 0     


Q ss_pred             ---------------------------------CeeEEEECCCCCEEEEEeC----------------------------
Q 019349          181 ---------------------------------PLAAIVLSSNGMYIATASE----------------------------  199 (342)
Q Consensus       181 ---------------------------------~v~~i~~s~dg~~lat~s~----------------------------  199 (342)
                                                       .-..++|+|+..++++.+.                            
T Consensus       357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  436 (689)
T 1yiq_A          357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRT  436 (689)
T ss_dssp             ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEE
T ss_pred             CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccc
Confidence                                             0123789998888887643                            


Q ss_pred             -----------------CCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349          200 -----------------QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       200 -----------------dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~  262 (342)
                                       +|+ ++.||+.+|+.+.++..+.   .+..-.++..+.   +++.++.||.|+.||.++++..
T Consensus       437 ~~~p~~~~~~~~~~~~~~g~-l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg---lvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          437 GMMPEGAEGLLEMAKSWSGK-LIAWDPVKQQAAWEVPYVT---IFNGGTLSTAGN---LVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             CCCCSSHHHHHHHHTTCEEE-EEEEETTTTEEEEEEEESS---SCCCCEEEETTT---EEEEECTTSEEEEEETTTCCEE
T ss_pred             cccCcccccCCCCCCCccee-EEEEECCCCCeEeEccCCC---CccCccceECCC---EEEEECCCCcEEEEECCCCccc
Confidence                             255 5799999999988775432   233335666676   8999999999999999988763

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.93  E-value=3.4e-07  Score=77.27  Aligned_cols=182  Identities=10%  Similarity=0.021  Sum_probs=125.2

Q ss_pred             eEEEEEcCCCCEEEEEcCC---cEEEEeCCCCcEEEEEeeCC-EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349           10 VFFVSFNQDNSGFALSTKD---GFKIFDSSTGRLCYERAVGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~~~---g~~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~   85 (342)
                      ...|.|+ ++.+..+.+.+   .++++|+.+++++....... .....+....+.+..+..      .++.+.++|..+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~g~~ly~ltw------~~~~v~v~D~~t~  117 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDWKDKIVGLTW------KNGLGFVWNIRNL  117 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSSEEEEEETTTC
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEeCCEEEEEEe------eCCEEEEEECccC
Confidence            4678898 66544444443   47999999999887655432 111122233556666654      5889999999999


Q ss_pred             cEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCc---eEEEEeeCCCccEEEEeCCCCccEE
Q 019349           86 TALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLK---GLCAFSPSLNACFLAVPASTTKGSV  161 (342)
Q Consensus        86 ~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~g~i  161 (342)
                      +.+.++..+..-..++...+.++++. +++|.++|..+.+.+..+....+..   .+..+.+. ++...+..-  .++.|
T Consensus       118 ~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w--~~~~I  194 (262)
T 3nol_A          118 RQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVW--QTNKI  194 (262)
T ss_dssp             CEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEET--TSSEE
T ss_pred             cEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEc--cCCeE
Confidence            99999988765567777777766665 5689999999999998887643221   22223333 454444443  46799


Q ss_pred             EEEEccCCceeEEEecc------------cCCeeEEEECCCCCEEEEEeCCC
Q 019349          162 LVYNVMELHSHCEIDAH------------QAPLAAIVLSSNGMYIATASEQG  201 (342)
Q Consensus       162 ~iwd~~~~~~~~~~~~h------------~~~v~~i~~s~dg~~lat~s~dg  201 (342)
                      .+.|.++++.+..+...            ..-.+.|+|+|+++.|...+..=
T Consensus       195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~W  246 (262)
T 3nol_A          195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLW  246 (262)
T ss_dssp             EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTC
T ss_pred             EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCC
Confidence            99999999988877532            13568999999988877776543

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=98.91  E-value=1.4e-06  Score=79.56  Aligned_cols=178  Identities=7%  Similarity=-0.038  Sum_probs=106.8

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE-CC--eEEEEECCCCceeeEE-eCCC-CCceEEEEeeCCC
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-RE--KTYIYDANTLAILDTI-DTVP-NLKGLCAFSPSLN  146 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~-d~--~i~i~d~~~~~~~~~~-~~~~-~~~~~~~~~~~~~  146 (342)
                      ++.|++||..+++............ ++++++.  ++++. ++  .|++++.........+ .... .......++.+|+
T Consensus       151 ~~~I~~id~~~g~~~~~~~~~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~  229 (409)
T 3hrp_A          151 DPRVRLISVDDNKVTTVHPGFKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDET  229 (409)
T ss_dssp             TTEEEEEETTTTEEEEEEETCCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTT
T ss_pred             CCcEEEEECCCCEEEEeeccCCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCC
Confidence            6899999998877665554433344 7787764  34443 23  8999998765443343 1111 1122334455663


Q ss_pred             ccEEEEeCCCCccEEEEEEccCCceeEE----EecccCC--eeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349          147 ACFLAVPASTTKGSVLVYNVMELHSHCE----IDAHQAP--LAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~~~~~~----~~~h~~~--v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~~~~~~~  219 (342)
                      ...|.++.  .++.|..||..++.....    ..++...  .+.|+|+|+ +.++++-...++ |+.|+... +. ..+.
T Consensus       230 ~g~lyv~d--~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~-I~~~~~~g-~~-~~~~  304 (409)
T 3hrp_A          230 EEWLYFVD--SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSS-VYKITPDG-EC-EWFC  304 (409)
T ss_dssp             SSEEEEEC--TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTE-EEEECTTC-CE-EEEE
T ss_pred             CCeEEEEE--CCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCE-EEEEecCC-CE-EEEE
Confidence            33444454  478999999987653322    1222222  239999995 555555555555 67888753 32 2221


Q ss_pred             cCc-----C--------ceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCCCC
Q 019349          220 RGT-----Y--------PSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGFAI  260 (342)
Q Consensus       220 ~~~-----~--------~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~~~  260 (342)
                      ...     .        -.....|+|+|++.   ++++-+ .++.|+.|++..+.
T Consensus       305 g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~---lyvad~~~~~~I~~~~~~~G~  356 (409)
T 3hrp_A          305 GSATQKTVQDGLREEALFAQPNGMTVDEDGN---FYIVDGFKGYCLRKLDILDGY  356 (409)
T ss_dssp             ECTTCCSCBCEEGGGCBCSSEEEEEECTTCC---EEEEETTTTCEEEEEETTTTE
T ss_pred             eCCCCCCcCCCcccccEeCCCeEEEEeCCCC---EEEEeCCCCCEEEEEECCCCE
Confidence            110     0        12378899999998   888888 89999999975543

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.87  E-value=2.9e-08  Score=87.30  Aligned_cols=216  Identities=11%  Similarity=0.116  Sum_probs=132.4

Q ss_pred             EEEEcCCCCEEEEEc-CCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349           12 FVSFNQDNSGFALST-KDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (342)
Q Consensus        12 ~l~fs~d~~~la~g~-~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~   90 (342)
                      +..+..++. |.+++ +.++..|| .+++.......+......+..+.+..+.++.       .+ |..+|. +++.+..
T Consensus        24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~v~t-------~~-l~~~d~-~g~~~~~   92 (330)
T 3hxj_A           24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGTIYFGS-------DK-VYAINP-DGTEKWR   92 (330)
T ss_dssp             CCEECTTSC-EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTEECCSS-------CE-EEEECC-CGGGGGG
T ss_pred             CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCcEEEec-------Cc-EEEECC-CCcEEEE
Confidence            345556776 44555 55689999 8887765443332222333333333344444       34 888886 5655443


Q ss_pred             EecCCc-eEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC
Q 019349           91 LNFLTS-ILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME  168 (342)
Q Consensus        91 ~~~~~~-v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~  168 (342)
                      +..... .....+..+.+.+++ ++.++.+|.. ++...........  +.++...+++.+.+ +.  .++.|..+|.. 
T Consensus        93 ~~~~~~~~~~~~~~~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~--~~~~~~~~~g~l~v-gt--~~~~l~~~d~~-  165 (330)
T 3hxj_A           93 FDTKKAIVSDFTIFEDILYVTSMDGHLYAINTD-GTEKWRFKTKKAI--YATPIVSEDGTIYV-GS--NDNYLYAINPD-  165 (330)
T ss_dssp             SCC-----CCEEEETTEEEEECTTSEEEEECTT-SCEEEEEECSSCC--CSCCEECTTSCEEE-EC--TTSEEEEECTT-
T ss_pred             EECCCCcccCceEECCEEEEEecCCEEEEEcCC-CCEEEEEcCCCce--eeeeEEcCCCEEEE-Ec--CCCEEEEECCC-
Confidence            332221 122233466677766 7799999988 7766666543322  22223344555444 33  36889999998 


Q ss_pred             CceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC
Q 019349          169 LHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS  248 (342)
Q Consensus       169 ~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d  248 (342)
                      ++....+......+.++.+.++|...+..   +.+ ..+| .+++.+..+...  ...+.+++..+++.    |..++.+
T Consensus       166 g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l-~~~d-~~g~~~~~~~~~--~~~~~~~~~~~~g~----l~v~t~~  234 (330)
T 3hxj_A          166 GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKV-YAIN-PDGTEKWNFYAG--YWTVTRPAISEDGT----IYVTSLD  234 (330)
T ss_dssp             SCEEEEEECSSCCCSCCEECTTCCEEEES---SSE-EEEC-TTSCEEEEECCS--SCCCSCCEECTTSC----EEEEETT
T ss_pred             CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEE-EEEC-CCCcEEEEEccC--CcceeceEECCCCe----EEEEcCC
Confidence            77776666666678888888888865544   555 5899 788877766432  23477788888886    6667778


Q ss_pred             CcEEEEec
Q 019349          249 GSLHVFSP  256 (342)
Q Consensus       249 g~i~vwd~  256 (342)
                      +.|..+|.
T Consensus       235 ~gl~~~~~  242 (330)
T 3hxj_A          235 GHLYAINP  242 (330)
T ss_dssp             TEEEEECT
T ss_pred             CeEEEECC
Confidence            88888874

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.83  E-value=5.3e-06  Score=69.32  Aligned_cols=182  Identities=12%  Similarity=0.048  Sum_probs=124.1

Q ss_pred             CeEEEEEcCCCCEEEEEcCC---cEEEEeCCCCcEEEEEeeC-CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            9 PVFFVSFNQDNSGFALSTKD---GFKIFDSSTGRLCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~---g~~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      -...+.|++ +.+..+.+..   .++++|+.+++++...... ......+....+.+..+..      .++.+.++|..+
T Consensus        22 ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw------~~~~v~v~D~~t   94 (243)
T 3mbr_X           22 FTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTW------RNHEGFVYDLAT   94 (243)
T ss_dssp             CEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEES------SSSEEEEEETTT
T ss_pred             ccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEe------eCCEEEEEECCc
Confidence            456889986 4444444443   4799999999988765432 2111122223456655554      589999999999


Q ss_pred             CcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCce---EEEEeeCCCccEEEEeCCCCccE
Q 019349           85 GTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKG---LCAFSPSLNACFLAVPASTTKGS  160 (342)
Q Consensus        85 ~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~g~  160 (342)
                      .+.+.++..+..-..++.....++++. +++|.++|..+.+.+.++....++..   +..+.+. ++...+..-  .+..
T Consensus        95 l~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw--~s~~  171 (243)
T 3mbr_X           95 LTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVW--LTSR  171 (243)
T ss_dssp             TEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET--TTTE
T ss_pred             CcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEEC--CCCe
Confidence            999999988776677887777776665 66999999999999988876443221   2233333 344444443  3678


Q ss_pred             EEEEEccCCceeEEEecc-------------cCCeeEEEECCCCCEEEEEeCC
Q 019349          161 VLVYNVMELHSHCEIDAH-------------QAPLAAIVLSSNGMYIATASEQ  200 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h-------------~~~v~~i~~s~dg~~lat~s~d  200 (342)
                      |.+.|.++++.+..+...             ..-.+.|+++|+++.|...+.-
T Consensus       172 I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          172 IARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            999999999988877521             1356899999987776666543

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.81  E-value=9.7e-07  Score=74.51  Aligned_cols=178  Identities=12%  Similarity=0.038  Sum_probs=121.6

Q ss_pred             eEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCC-EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349           10 VFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA-FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~   87 (342)
                      ...|.|+. +.+..+.+.++ ++++|+++++.+... ... .....+....+.+..+..      .++.+.++|.++.+.
T Consensus        57 tqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~~Ly~ltw------~~~~v~V~D~~Tl~~  128 (268)
T 3nok_A           57 TQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGERLYQLTW------TEGLLFTWSGMPPQR  128 (268)
T ss_dssp             EEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSSCEEEEES------SSCEEEEEETTTTEE
T ss_pred             cceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCCEEEEEEc------cCCEEEEEECCcCcE
Confidence            46788873 44444445544 799999999876655 322 111123334555555554      589999999999999


Q ss_pred             EEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCce---EEEEeeCCCccEEEEeCCCCccEEEE
Q 019349           88 LRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKG---LCAFSPSLNACFLAVPASTTKGSVLV  163 (342)
Q Consensus        88 ~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~g~i~i  163 (342)
                      +.++.....-..++...+.++++. +++|.++|..+.+.+..+....++..   +..+.+. ++...+..-  .++.|.+
T Consensus       129 ~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw--~s~~I~v  205 (268)
T 3nok_A          129 ERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIW--HSSDVLE  205 (268)
T ss_dssp             EEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET--TCSEEEE
T ss_pred             EEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEEC--CCCeEEE
Confidence            999988766677888887777765 67999999999999988876444322   2233333 444444443  4678999


Q ss_pred             EEccCCceeEEEecc-------------cCCeeEEEECCCCCEEEEEe
Q 019349          164 YNVMELHSHCEIDAH-------------QAPLAAIVLSSNGMYIATAS  198 (342)
Q Consensus       164 wd~~~~~~~~~~~~h-------------~~~v~~i~~s~dg~~lat~s  198 (342)
                      .|.++++.+..+...             .+-.+.|+++|+++.|...+
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            999999988877532             13578999999776555544

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.79  E-value=1.2e-06  Score=85.64  Aligned_cols=200  Identities=9%  Similarity=0.061  Sum_probs=121.0

Q ss_pred             EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEc-CCeEEEEE-C-------------C
Q 019349           49 FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLN-KKRLVIVL-R-------------E  113 (342)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~-~~~~~~~~-d-------------~  113 (342)
                      +..+.+.++++.+++....  ......+|++||+.+++.+...........+.|+ .+.++... +             .
T Consensus       131 l~~~~~SpDg~~lAy~~~~--~G~~~~~i~v~dl~tg~~~~~~~~~~k~~~~~WsDg~~l~y~~~~~~~~~~~~~~~~~~  208 (693)
T 3iuj_A          131 LDQLSFSRDGRILAYSLSL--AGSDWREIHLMDVESKQPLETPLKDVKFSGISWLGNEGFFYSSYDKPDGSELSARTDQH  208 (693)
T ss_dssp             EEEEEECTTSSEEEEEEEC--SSCCEEEEEEEETTTCSEEEEEEEEEESCCCEEETTTEEEEEESSCCC-------CCCC
T ss_pred             EEEEEECCCCCEEEEEEec--CCCceEEEEEEECCCCCCCccccCCceeccEEEeCCCEEEEEEecCcccccccccCCCc
Confidence            4456778888888865421  0013468999999999876532111112344555 44566665 3             2


Q ss_pred             eEEEEECCCCce--eeEEeCCC-CCceEEEEeeCCCccEEEEeCC--CCccEEEEEEccCCc-eeEEEecccCCeeEEEE
Q 019349          114 KTYIYDANTLAI--LDTIDTVP-NLKGLCAFSPSLNACFLAVPAS--TTKGSVLVYNVMELH-SHCEIDAHQAPLAAIVL  187 (342)
Q Consensus       114 ~i~i~d~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~--~~~g~i~iwd~~~~~-~~~~~~~h~~~v~~i~~  187 (342)
                      +|++|++.+.+.  ...+.... ++.....+..++++.+|++...  ...+.|.++|+.++. ....+..+....... +
T Consensus       209 ~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~  287 (693)
T 3iuj_A          209 KVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-V  287 (693)
T ss_dssp             EEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-E
T ss_pred             EEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-E
Confidence            499999987643  22222222 2334566778888888765431  123589999998764 455666666666555 6


Q ss_pred             CCCCCEEEEEeC-C---CcEEEEEEcCCCee--EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC---cEEEEecCC
Q 019349          188 SSNGMYIATASE-Q---GTIIRVFLVSEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG---SLHVFSPGF  258 (342)
Q Consensus       188 s~dg~~lat~s~-d---g~~irlwd~~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg---~i~vwd~~~  258 (342)
                      +++|..|+..+. +   +++ ..+|+.++..  ...+..+. . .+.  .|+++++   +|+....++   .|++|+++.
T Consensus       288 ~~~g~~l~~~t~~~~~~~~l-~~~d~~~~~~~~~~~l~~~~-~-~~~--~~s~~g~---~lv~~~~~~g~~~l~~~d~~g  359 (693)
T 3iuj_A          288 DNKGSTLYLLTNRDAPNRRL-VTVDAANPGPAHWRDLIPER-Q-QVL--TVHSGSG---YLFAEYMVDATARVEQFDYEG  359 (693)
T ss_dssp             EEETTEEEEEECTTCTTCEE-EEEETTSCCGGGCEEEECCC-S-SCE--EEEEETT---EEEEEEEETTEEEEEEECTTS
T ss_pred             eccCCEEEEEECCCCCCCEE-EEEeCCCCCccccEEEecCC-C-CEE--EEEEECC---EEEEEEEECCeeEEEEEECCC
Confidence            677766655443 3   454 5899987653  23443322 2 233  8899998   777666544   688998874


Q ss_pred             C
Q 019349          259 A  259 (342)
Q Consensus       259 ~  259 (342)
                      .
T Consensus       360 ~  360 (693)
T 3iuj_A          360 K  360 (693)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.79  E-value=1.7e-06  Score=82.36  Aligned_cols=232  Identities=11%  Similarity=0.062  Sum_probs=139.8

Q ss_pred             CCEEEEEcCCc-EEEEeCCCCcEEEEEeeCC------EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEE
Q 019349           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGA------FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL   91 (342)
Q Consensus        19 ~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~   91 (342)
                      +..+.+++.++ +..+|..+|+++.+.....      +...-.. ..+.+.+.+.+.. ...++.|..+|.++|+.+.++
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFV-AKDTVLMGCSGAE-LGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETTEEEEECBCGG-GTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEE-ECCEEEEEecCCc-cCCCCEEEEEECCCCcEEEEE
Confidence            45677776665 6889999998886654321      1100011 1233433332100 001689999999999999887


Q ss_pred             ecCCce---------------------------------------EEEEEcC--CeEEEEEC-----------------C
Q 019349           92 NFLTSI---------------------------------------LAVRLNK--KRLVIVLR-----------------E  113 (342)
Q Consensus        92 ~~~~~v---------------------------------------~~i~~~~--~~~~~~~d-----------------~  113 (342)
                      ......                                       ..+.+++  +.+++...                 +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            653221                                       1133333  34444432                 2


Q ss_pred             eEEEEECCCCceeeEEeCCCCC-------ceEEEEeeCCCcc---EEEEeCCCCccEEEEEEccCCceeEEEeccc----
Q 019349          114 KTYIYDANTLAILDTIDTVPNL-------KGLCAFSPSLNAC---FLAVPASTTKGSVLVYNVMELHSHCEIDAHQ----  179 (342)
Q Consensus       114 ~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~---~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~----  179 (342)
                      .|..+|..+++.+..++...+.       .....+....++.   .++.+.  .+|.+.++|..+++.+..++...    
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~~w~~~~~~~~~w  350 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVNV  350 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCS
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeC--CCcEEEEEECCCCCEEeeecccCCccc
Confidence            5999999999998888754321       1112222212342   444454  58999999999998876554211    


Q ss_pred             ---------CCe--------------------------eEEEECCCCCEEEEEeC-------------------------
Q 019349          180 ---------APL--------------------------AAIVLSSNGMYIATASE-------------------------  199 (342)
Q Consensus       180 ---------~~v--------------------------~~i~~s~dg~~lat~s~-------------------------  199 (342)
                               .++                          ..++|+|+..+|...+.                         
T Consensus       351 ~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~  430 (571)
T 2ad6_A          351 FKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLA  430 (571)
T ss_dssp             EEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEE
T ss_pred             cccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccce
Confidence                     111                          24678888877777642                         


Q ss_pred             ------------CCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          200 ------------QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       200 ------------dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                                  +|. +..||+.+|+.+.++..+.   .+.+..+...+.   ++.+++.||.|+.||.++++.
T Consensus       431 ~~~~~~~~~~~~~g~-l~a~D~~tG~~~W~~~~~~---~~~~~~~~t~gg---~v~~g~~dg~l~a~D~~tG~~  497 (571)
T 2ad6_A          431 MYPGPNGPTKKEMGQ-IRAFDLTTGKAKWTKWEKF---AAWGGTLYTKGG---LVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEECTTSTTSCCCEE-EEEECTTTCCEEEEEEESS---CCCSBCEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             eccCccccCCCCCCe-EEEEECCCCCEEEEecCCC---CccceeEEECCC---EEEEEcCCCeEEEEECCCCCE
Confidence                        355 4699999999888775332   122223333444   688899999999999988765

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.76  E-value=5.2e-06  Score=72.33  Aligned_cols=188  Identities=10%  Similarity=-0.028  Sum_probs=112.9

Q ss_pred             EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEE-EE--CCeEEEEECCCCceee
Q 019349           51 IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVI-VL--REKTYIYDANTLAILD  127 (342)
Q Consensus        51 ~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~~--d~~i~i~d~~~~~~~~  127 (342)
                      ...+..+.+.+++++.      .++.|..|+. +++..........+.++.++++..++ +.  ++.|.+|+.. ++.. 
T Consensus        49 gp~~~~~g~~l~~~d~------~~~~i~~~~~-~g~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~~~-  119 (305)
T 3dr2_A           49 GPAWWEAQRTLVWSDL------VGRRVLGWRE-DGTVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQAH-  119 (305)
T ss_dssp             EEEEEGGGTEEEEEET------TTTEEEEEET-TSCEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEE-
T ss_pred             CCeEeCCCCEEEEEEC------CCCEEEEEeC-CCCEEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-CCEE-
Confidence            3455566676666665      4789999998 45533222334578899998875444 44  3589999985 5432 


Q ss_pred             EEeCCCCC---ceEEEEeeCCCccEEEEe---CCC------------CccEEEEEEccCCceeEEEecccCCeeEEEECC
Q 019349          128 TIDTVPNL---KGLCAFSPSLNACFLAVP---AST------------TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSS  189 (342)
Q Consensus       128 ~~~~~~~~---~~~~~~~~~~~~~~l~~~---~~~------------~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~  189 (342)
                      .+......   .....+..++++.+.++-   +..            ..+.|..||..+++.....  +....+.++|+|
T Consensus       120 ~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p~gl~~sp  197 (305)
T 3dr2_A          120 LLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHPNGLAFSP  197 (305)
T ss_dssp             EEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSEEEEEECT
T ss_pred             EEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCCcceEEcC
Confidence            22111110   112345566777777642   100            1356888887666544333  445678899999


Q ss_pred             CCCEEEEEeCC------CcEEEEEEcCCCeeEE---EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          190 NGMYIATASEQ------GTIIRVFLVSEATKSY---SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       190 dg~~lat~s~d------g~~irlwd~~~~~~~~---~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      ||+.|+.+...      +. |++||+..+. +.   .+.. ........+++.+++.   +.+ ++.+ .|++|+.+
T Consensus       198 dg~~lyv~~~~~~~~~~~~-i~~~~~~~~~-l~~~~~~~~-~~~~~pdgi~~d~~G~---lwv-~~~~-gv~~~~~~  266 (305)
T 3dr2_A          198 DEQTLYVSQTPEQGHGSVE-ITAFAWRDGA-LHDRRHFAS-VPDGLPDGFCVDRGGW---LWS-SSGT-GVCVFDSD  266 (305)
T ss_dssp             TSSEEEEEECCC---CCCE-EEEEEEETTE-EEEEEEEEC-CSSSCCCSEEECTTSC---EEE-CCSS-EEEEECTT
T ss_pred             CCCEEEEEecCCcCCCCCE-EEEEEecCCC-ccCCeEEEE-CCCCCCCeEEECCCCC---EEE-ecCC-cEEEECCC
Confidence            99988877665      44 5799987654 21   1111 0122345688999997   444 4444 49999864

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.75  E-value=3.8e-06  Score=80.01  Aligned_cols=192  Identities=8%  Similarity=0.056  Sum_probs=112.8

Q ss_pred             CCEEEEEcC-Cc-EEEEeC-CCCcEEEEEeeCCEE-----------EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349           19 NSGFALSTK-DG-FKIFDS-STGRLCYERAVGAFS-----------IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus        19 ~~~la~g~~-~g-~~v~d~-~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      +..+.+++. ++ +.-+|. .+|+++.+.....-.           ..........+.+.+       .++.|..+|.++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-------~dg~l~alD~~t  134 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQ-------ANGHLLALDAKT  134 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEEC-------TTSEEEEEETTT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEe-------CCCEEEEEECCC
Confidence            334555555 44 788999 899887665432100           000011233444333       378999999999


Q ss_pred             CcEEEEEecCC-----ceE-EEEEcCCeEEEEE-------CCeEEEEECCCCceeeEEeCCCCCc---------------
Q 019349           85 GTALRELNFLT-----SIL-AVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLK---------------  136 (342)
Q Consensus        85 ~~~~~~~~~~~-----~v~-~i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~---------------  136 (342)
                      |+.+.+.....     .+. .-.+..+.+++..       ++.|+.+|..+++.+.++.......               
T Consensus       135 G~~~W~~~~~~~~~~~~~~~~P~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~  214 (571)
T 2ad6_A          135 GKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHY  214 (571)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGG
T ss_pred             CCEEEEecCCCCCccceeccCCEEECCEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCcccccccccc
Confidence            99998876543     222 1122345555544       4699999999999998876532210               


Q ss_pred             ------------------e---EEEEeeCCCccEEEEeCCCC--------------ccEEEEEEccCCceeEEEec--cc
Q 019349          137 ------------------G---LCAFSPSLNACFLAVPASTT--------------KGSVLVYNVMELHSHCEIDA--HQ  179 (342)
Q Consensus       137 ------------------~---~~~~~~~~~~~~l~~~~~~~--------------~g~i~iwd~~~~~~~~~~~~--h~  179 (342)
                                        +   ...++.+++...+..+....              .+.|..+|..+++.+-.++.  |.
T Consensus       215 G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d  294 (571)
T 2ad6_A          215 GQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHD  294 (571)
T ss_dssp             CCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTC
T ss_pred             cccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCc
Confidence                              0   00122233323333332100              14699999999998766653  21


Q ss_pred             --------CCeeEEEECCCCC---EEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349          180 --------APLAAIVLSSNGM---YIATASEQGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       180 --------~~v~~i~~s~dg~---~lat~s~dg~~irlwd~~~~~~~~~~~  219 (342)
                              .++. +...++|+   .++.++.+|.+ .++|..+|+.+..++
T Consensus       295 ~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l-~~lD~~tG~~~w~~~  343 (571)
T 2ad6_A          295 EWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGIL-YTLNRENGNLIVAEK  343 (571)
T ss_dssp             SSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEE-EEEETTTCCEEEEEE
T ss_pred             ccccccCCCCEE-EecccCCcEEEEEEEeCCCcEE-EEEECCCCCEEeeec
Confidence                    2221 22334774   57788888875 699999999887764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.74  E-value=8.5e-07  Score=77.79  Aligned_cols=215  Identities=9%  Similarity=0.030  Sum_probs=132.8

Q ss_pred             CCEEEEEcC-CcEEEEeCCCCcEEEEEeeCCE--EEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC
Q 019349           19 NSGFALSTK-DGFKIFDSSTGRLCYERAVGAF--SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT   95 (342)
Q Consensus        19 ~~~la~g~~-~g~~v~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~   95 (342)
                      +..|.+|+. .++..||.. ++..........  ....... ...+.+.+       .++.|..+|.. ++.+..+....
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~-~g~l~vgt-------~~~~l~~~d~~-g~~~~~~~~~~  176 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSE-DGTIYVGS-------NDNYLYAINPD-GTEKWRFKTND  176 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECT-TSCEEEEC-------TTSEEEEECTT-SCEEEEEECSS
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcC-CCEEEEEc-------CCCEEEEECCC-CCEeEEEecCC
Confidence            344666764 568899988 766655433221  1112222 23344433       36899999998 88777776543


Q ss_pred             -ceEEEEEc-CCeEEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeE
Q 019349           96 -SILAVRLN-KKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHC  173 (342)
Q Consensus        96 -~v~~i~~~-~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~  173 (342)
                       .+.++... ...+.+++ +.++.+| .+++.+........  .+.++..++++...+..   .++.|..+| .+++.+.
T Consensus       177 ~~~~~~~~d~~g~l~v~t-~~l~~~d-~~g~~~~~~~~~~~--~~~~~~~~~~g~l~v~t---~~~gl~~~~-~~g~~~~  248 (330)
T 3hxj_A          177 AITSAASIGKDGTIYFGS-DKVYAIN-PDGTEKWNFYAGYW--TVTRPAISEDGTIYVTS---LDGHLYAIN-PDGTEKW  248 (330)
T ss_dssp             CCCSCCEECTTCCEEEES-SSEEEEC-TTSCEEEEECCSSC--CCSCCEECTTSCEEEEE---TTTEEEEEC-TTSCEEE
T ss_pred             CceeeeEEcCCCEEEEEe-CEEEEEC-CCCcEEEEEccCCc--ceeceEECCCCeEEEEc---CCCeEEEEC-CCCCEeE
Confidence             45666674 44566666 9999999 77776666654322  23344445565555443   356788887 4566666


Q ss_pred             EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEE
Q 019349          174 EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHV  253 (342)
Q Consensus       174 ~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~v  253 (342)
                      .+......+.++.+.++|. |..++.+|.+ ..+|. +++.+..+...  ...+.++...+++.    |..++.+|.+++
T Consensus       249 ~~~~~~~~~~~~~~~~~g~-l~v~t~~ggl-~~~d~-~g~~~~~~~~~--~~~~~~~~~d~~g~----l~~gt~~G~~~~  319 (330)
T 3hxj_A          249 RFKTGKRIESSPVIGNTDT-IYFGSYDGHL-YAINP-DGTEKWNFETG--SWIIATPVIDENGT----IYFGTRNGKFYA  319 (330)
T ss_dssp             EEECSSCCCSCCEECTTSC-EEEECTTCEE-EEECT-TSCEEEEEECS--SCCCSCCEECTTCC----EEEECTTSCEEE
T ss_pred             EeeCCCCccccceEcCCCe-EEEecCCCCE-EEECC-CCcEEEEEEcC--CccccceEEcCCCE----EEEEcCCCeEEE
Confidence            6655555556677776665 6667777765 58885 77777666432  23366677778886    778999999999


Q ss_pred             EecCCCC
Q 019349          254 FSPGFAI  260 (342)
Q Consensus       254 wd~~~~~  260 (342)
                      ...+..+
T Consensus       320 ~~~~~~~  326 (330)
T 3hxj_A          320 LFNLEHH  326 (330)
T ss_dssp             EEC----
T ss_pred             Eeccccc
Confidence            9876544

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.72  E-value=8.7e-05  Score=63.10  Aligned_cols=227  Identities=4%  Similarity=-0.053  Sum_probs=128.4

Q ss_pred             CCEEEEEcCCcEEEEeCCCCcE-------EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEE
Q 019349           19 NSGFALSTKDGFKIFDSSTGRL-------CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL   91 (342)
Q Consensus        19 ~~~la~g~~~g~~v~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~   91 (342)
                      |.+|..+..+.++.++++....       ...........+.+....+.+.++..      ..+.|..+|...+.....+
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~------~~~~I~~~~~~g~~~~~~~   74 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI------SEPSIGRASLHGGEPTTII   74 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET------TTTEEEEEESSSCCCEEEE
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEEC------CCCEEEEEecCCCCcEEEE
Confidence            3456666555677788765431       12211222334555555666666654      3689999998765543333


Q ss_pred             ecC-CceEEEEEcC--CeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC-CccEEEEEE
Q 019349           92 NFL-TSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYN  165 (342)
Q Consensus        92 ~~~-~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~g~i~iwd  165 (342)
                      ... ....++++++  ..++++.  .+.|.++++..... ..+... .......++.++++..|..+... ..+.|..++
T Consensus        75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~-~~~~~~-~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~  152 (267)
T 1npe_A           75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQR-RVLFDT-GLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (267)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECS-SCSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCE-EEEEEC-CCCCccEEEEeeCCCEEEEEECCCCCcEEEEEe
Confidence            222 4678888876  3556555  56899999864322 222211 11223445556643344333321 147898888


Q ss_pred             ccCCceeEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEE
Q 019349          166 VMELHSHCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA  244 (342)
Q Consensus       166 ~~~~~~~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~  244 (342)
                      +.... ...+ .......+.|++++++..|..+......|.++|.........+...   .....|++. ++.   ++++
T Consensus       153 ~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d-~~~---lyva  224 (267)
T 1npe_A          153 MDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY-GKN---LYYT  224 (267)
T ss_dssp             TTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE-TTE---EEEE
T ss_pred             cCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe-CCE---EEEE
Confidence            75432 2222 2233457899999988777666655444689998754433222211   123566654 343   4555


Q ss_pred             EeCCCcEEEEecCCCCC
Q 019349          245 TSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       245 ~s~dg~i~vwd~~~~~~  261 (342)
                      ....+.|.++|.++++.
T Consensus       225 ~~~~~~v~~~d~~~g~~  241 (267)
T 1npe_A          225 DWKTNSVIAMDLAISKE  241 (267)
T ss_dssp             ETTTTEEEEEETTTTEE
T ss_pred             ECCCCeEEEEeCCCCCc
Confidence            55678999999876653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.71  E-value=2.3e-06  Score=83.09  Aligned_cols=190  Identities=17%  Similarity=0.095  Sum_probs=115.3

Q ss_pred             CCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEE-----------EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGAFS-----------IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus        19 ~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      +..|.+++.++ +.-+|..+|+++.+.....-.           ........+.+.+.+       .++.|..+|.++|+
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~-------~dg~l~alD~~tG~  138 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGT-------LDGRLIALDAKTGK  138 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEEC-------TTSEEEEEETTTCC
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEc-------CCCEEEEEECCCCC
Confidence            34455555554 688899999888765432100           000001123444433       37899999999999


Q ss_pred             EEEEEecCC-----ceE-EEEEcCCeEEEEE-------CCeEEEEECCCCceeeEEeCCC-CCce---------------
Q 019349           87 ALRELNFLT-----SIL-AVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVP-NLKG---------------  137 (342)
Q Consensus        87 ~~~~~~~~~-----~v~-~i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~-~~~~---------------  137 (342)
                      .+.+.....     .+. .-.+..+.+++..       ++.|+.+|..+++.+..+.... .+..               
T Consensus       139 ~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~  218 (668)
T 1kv9_A          139 AIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ  218 (668)
T ss_dssp             EEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred             EeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence            998876531     111 1122345555543       3689999999999998886521 1110               


Q ss_pred             -------------EEEEeeCCCccEEEEeCCCCcc-------------------EEEEEEccCCceeEEEec--cc----
Q 019349          138 -------------LCAFSPSLNACFLAVPASTTKG-------------------SVLVYNVMELHSHCEIDA--HQ----  179 (342)
Q Consensus       138 -------------~~~~~~~~~~~~l~~~~~~~~g-------------------~i~iwd~~~~~~~~~~~~--h~----  179 (342)
                                   ....+.+++...+.++.  .++                   .|..+|..+++.+-.++.  |.    
T Consensus       219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~--~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~  296 (668)
T 1kv9_A          219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGT--GNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDF  296 (668)
T ss_dssp             SSCHHHHCEECCCCSCEEEETTTTEEEEEC--CCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             ccceeeeCCCCccccceEEcCCCCEEEEeC--CCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccc
Confidence                         01233444444555544  234                   499999999998876653  32    


Q ss_pred             ---CCeeEEEECCCCC---EEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349          180 ---APLAAIVLSSNGM---YIATASEQGTIIRVFLVSEATKSYSF  218 (342)
Q Consensus       180 ---~~v~~i~~s~dg~---~lat~s~dg~~irlwd~~~~~~~~~~  218 (342)
                         .+.....+..+|+   .|+.++.+|.+ .++|..+|+.+...
T Consensus       297 ~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l-~~lD~~tG~~l~~~  340 (668)
T 1kv9_A          297 TATQQITLAELNIDGKPRKVLMQAPKNGFF-YVLDRTNGKLISAE  340 (668)
T ss_dssp             CCCSCEEEEEEEETTEEEEEEEECCTTSEE-EEEETTTCCEEEEE
T ss_pred             cCCCCcEEEEeccCCcEEEEEEEECCCCEE-EEEECCCCCEeccc
Confidence               3333333334675   68899999975 79999999988544

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.66  E-value=1.3e-06  Score=77.67  Aligned_cols=155  Identities=12%  Similarity=0.154  Sum_probs=99.2

Q ss_pred             CceEEEEEcCCe-EEEEE-------CCeEEEEECCCCceeeEEeCCCC----CceEEEEeeCCCccEEEEeCC--CCccE
Q 019349           95 TSILAVRLNKKR-LVIVL-------REKTYIYDANTLAILDTIDTVPN----LKGLCAFSPSLNACFLAVPAS--TTKGS  160 (342)
Q Consensus        95 ~~v~~i~~~~~~-~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~--~~~g~  160 (342)
                      ..+.+++++++. ++++.       +.+|.+||+.+++.++.+..+..    ......+..++++..+..+..  ..++.
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~  146 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA  146 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence            368999999865 44444       26899999999988877764321    111233344433223323321  02578


Q ss_pred             EEEEEccCCceeEEEeccc-----------------------------CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 019349          161 VLVYNVMELHSHCEIDAHQ-----------------------------APLAAIVLSSNGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~-----------------------------~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~  211 (342)
                      |.+||+.+++..+.+..|.                             ..++.|+|+|||+.|+.+..++.  ++|.+..
T Consensus       147 i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~--~l~~~~~  224 (343)
T 2qe8_A          147 LIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST--SMYRIKS  224 (343)
T ss_dssp             EEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS--EEEEEEH
T ss_pred             EEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC--eEEEEEH
Confidence            9999998877665554321                             23688999999999999988876  3555432


Q ss_pred             C-----e--------eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          212 A-----T--------KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       212 ~-----~--------~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      .     .        .+..+  + .......+++++++.   ++++...++.|.+||.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~--g-~~g~pdgia~d~~G~---l~va~~~~~~V~~~d~~  277 (343)
T 2qe8_A          225 ADLSNLQLTDAELGSKIERY--S-EKPICDGISIDKDHN---IYVGDLAHSAIGVITSA  277 (343)
T ss_dssp             HHHTCTTCCHHHHHTTCEEE--E-ECCSCSCEEECTTCC---EEEEEGGGTEEEEEETT
T ss_pred             HHhcCCCCChhhhhcceEec--c-cCCCCceEEECCCCC---EEEEccCCCeEEEEECC
Confidence            1     1        00111  0 011245689999998   88888999999999973

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.62  E-value=1.6e-06  Score=77.73  Aligned_cols=216  Identities=8%  Similarity=-0.031  Sum_probs=128.5

Q ss_pred             cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCC---CCCCCeEEEEECCCCcEEEEEecC--------Cce
Q 019349           29 GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQP---SLSPRRLCLFNTTTGTALRELNFL--------TSI   97 (342)
Q Consensus        29 g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~d~~i~iwd~~~~~~~~~~~~~--------~~v   97 (342)
                      .+.++|..+++.+.....+....+.+.++...+.++..+...   ...+++|.+||+.+++.+.++..+        ...
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P  126 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRV  126 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTCEEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCT
T ss_pred             eEEEEECCCCeEEEEEeCCCCCceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCc
Confidence            567999999988876654333357777888877776521000   002689999999999999998765        235


Q ss_pred             EEEEEcCC--eEEEEE---CCeEEE--EECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC--
Q 019349           98 LAVRLNKK--RLVIVL---REKTYI--YDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME--  168 (342)
Q Consensus        98 ~~i~~~~~--~~~~~~---d~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~--  168 (342)
                      ..+.++++  .++++.   .+.+.+  +|..+   +..+.....    ..+.+.+...++  +.+ .||.+.+.|+.+  
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~--~~~-~dg~~~~vd~~~~~  196 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHY--LGS-CPASLAASDLAAAP  196 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEE--CCC-CTTSCEEEECCSSC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEE--EEc-CCCCEEEEECcccc
Confidence            67788776  466665   357888  88876   556654221    122333333333  222 478888888876  


Q ss_pred             ---CceeE----EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe--eEEEeccC--------cCceeEEEEE
Q 019349          169 ---LHSHC----EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT--KSYSFRRG--------TYPSTIFSLS  231 (342)
Q Consensus       169 ---~~~~~----~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~--~~~~~~~~--------~~~~~v~~l~  231 (342)
                         ++...    .+.....|.   . ++++..++..+. +++ .+.|+.+++  .+..+...        ..+.....++
T Consensus       197 ~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V-~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~  270 (368)
T 1mda_H          197 AAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSI-LQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVA  270 (368)
T ss_dssp             CCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCC-EEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEE
T ss_pred             ccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEE-EEEECCCCcceEEEEEEeccccccccccccCcceeeE
Confidence               33221    122223344   3 566666666666 775 689986542  22222111        0011112268


Q ss_pred             EecCCCcccEEEEEeC---------CCcEEEEecCCCCCCC
Q 019349          232 FGQSMQFQDILVATSS---------SGSLHVFSPGFAINQR  263 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~---------dg~i~vwd~~~~~~~~  263 (342)
                      |+||++   .|.++..         ++.+.++|+++.+..+
T Consensus       271 ~s~dg~---~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~  308 (368)
T 1mda_H          271 KLKNTD---GIMILTVEHSRSCLAAAENTSSVTASVGQTSG  308 (368)
T ss_dssp             EETTTT---EEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred             EcCCCC---EEEEEeccccCcccccCCCEEEEECCCCeEEE
Confidence            999998   6776543         2467799998876533

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.61  E-value=1.7e-05  Score=75.69  Aligned_cols=192  Identities=8%  Similarity=0.039  Sum_probs=113.6

Q ss_pred             CCEEEEEcC-Cc-EEEEeC-CCCcEEEEEeeCCE-------------EEEEEcCCCCe----EEEEcCCCCCCCCCCeEE
Q 019349           19 NSGFALSTK-DG-FKIFDS-STGRLCYERAVGAF-------------SIVEMLYSSSL----LAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus        19 ~~~la~g~~-~g-~~v~d~-~~~~~~~~~~~~~~-------------~~~~~~~~~~~----~~~~~~g~~~~~~d~~i~   78 (342)
                      +..|.+++. ++ +.-+|. .+|+++.+.....-             .-+...+....    +.+.+       .++.|.
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t-------~dg~l~  134 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQ-------LDGNVA  134 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEEC-------TTSEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEc-------CCCEEE
Confidence            344555654 44 788899 89988766543210             00111001222    43333       378999


Q ss_pred             EEECCCCcEEEEEecCC-----ceEE-EEEcCCeEEEEE-------CCeEEEEECCCCceeeEEeCCCCCce--------
Q 019349           79 LFNTTTGTALRELNFLT-----SILA-VRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLKG--------  137 (342)
Q Consensus        79 iwd~~~~~~~~~~~~~~-----~v~~-i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~--------  137 (342)
                      .+|.++|+.+.+.....     .+.+ -.+..+.+++..       ++.|+-+|..+++.+..+........        
T Consensus       135 AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~  214 (599)
T 1w6s_A          135 ALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFN  214 (599)
T ss_dssp             EEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTT
T ss_pred             EEECCCCCEEEeecCCCCCccceeecCCEEECCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCccccccccccc
Confidence            99999999998876543     2221 122345555543       57999999999999988765432100        


Q ss_pred             ---------------------------E-EEEeeCCCccEEEEeCCCC--------------ccEEEEEEccCCceeEEE
Q 019349          138 ---------------------------L-CAFSPSLNACFLAVPASTT--------------KGSVLVYNVMELHSHCEI  175 (342)
Q Consensus       138 ---------------------------~-~~~~~~~~~~~l~~~~~~~--------------~g~i~iwd~~~~~~~~~~  175 (342)
                                                 + ...+.+++...+..+....              .+.|..+|..+++.+-.+
T Consensus       215 ~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~  294 (599)
T 1w6s_A          215 IKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGY  294 (599)
T ss_dssp             TTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEE
T ss_pred             cccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEe
Confidence                                       0 0122223333444433211              247999999999987666


Q ss_pred             ec--cc--------CCeeEEEEC-CCC---CEEEEEeCCCcEEEEEEcCCCeeEEEec
Q 019349          176 DA--HQ--------APLAAIVLS-SNG---MYIATASEQGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       176 ~~--h~--------~~v~~i~~s-~dg---~~lat~s~dg~~irlwd~~~~~~~~~~~  219 (342)
                      +.  |.        .++. +... .+|   ..++.++.+|.+ .++|.++|+.+....
T Consensus       295 q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l-~~lD~~tG~~lw~~~  350 (599)
T 1w6s_A          295 QKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIV-YTLDRTDGALVSANK  350 (599)
T ss_dssp             ESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEE-EEEETTTCCEEEEEE
T ss_pred             ecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEE-EEEECCCCCEeeccc
Confidence            53  21        2222 2222 577   567788899975 699999999887664

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.61  E-value=2.4e-05  Score=74.75  Aligned_cols=229  Identities=10%  Similarity=0.064  Sum_probs=135.6

Q ss_pred             EEEEcCCc-EEEEeCCCCcEEEEEeeCC------EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC
Q 019349           22 FALSTKDG-FKIFDSSTGRLCYERAVGA------FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL   94 (342)
Q Consensus        22 la~g~~~g-~~v~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~   94 (342)
                      +.+++.++ +.-+|..+|+++.+.....      +...-... .+.+.+.+.+.. ...++.|..+|.++|+.+..+...
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e-~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAE-LGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGG-GTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CCEEEEEecccc-cCCCCeEEEEECCCCcEEEEEcCC
Confidence            77777666 6888999998886654321      11000111 233333221100 002689999999999999887654


Q ss_pred             CceE---------------------------------------EEEE--cCCeEEEEE-C----------------CeEE
Q 019349           95 TSIL---------------------------------------AVRL--NKKRLVIVL-R----------------EKTY  116 (342)
Q Consensus        95 ~~v~---------------------------------------~i~~--~~~~~~~~~-d----------------~~i~  116 (342)
                      ....                                       .+.+  ..+.+++.. +                +.|.
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~  281 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF  281 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence            3210                                       1222  233444444 2                3799


Q ss_pred             EEECCCCceeeEEeCCCCCc-------eEEEEeeC-CCc---cEEEEeCCCCccEEEEEEccCCceeEEEecc-------
Q 019349          117 IYDANTLAILDTIDTVPNLK-------GLCAFSPS-LNA---CFLAVPASTTKGSVLVYNVMELHSHCEIDAH-------  178 (342)
Q Consensus       117 i~d~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~---~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h-------  178 (342)
                      .+|..+++.+..++...+..       ..+.+... .++   ..++.+.  .+|.+.++|.++++.+...+..       
T Consensus       282 Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~--~~G~l~~lD~~tG~~lw~~~~~~~~~~~~  359 (599)
T 1w6s_A          282 GRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDTVNVFK  359 (599)
T ss_dssp             EEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEEC--CCcEEEEEECCCCCEeecccccCCccccc
Confidence            99999999998887654311       11122211 234   3455455  5899999999999887654421       


Q ss_pred             ------cCCe--------------------------eEEEECCCCCEEEEEe----------------------------
Q 019349          179 ------QAPL--------------------------AAIVLSSNGMYIATAS----------------------------  198 (342)
Q Consensus       179 ------~~~v--------------------------~~i~~s~dg~~lat~s----------------------------  198 (342)
                            ..++                          ..++|+|+..++....                            
T Consensus       360 ~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  439 (599)
T 1w6s_A          360 SVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMY  439 (599)
T ss_dssp             EECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             ccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceec
Confidence                  1111                          2467787776665532                            


Q ss_pred             -----------CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          199 -----------EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       199 -----------~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                                 .+|. +.-||+.+|+.+.+...+.   +..+-.+...+.   ++..++.||.++.||.++++.
T Consensus       440 ~~p~~~~~~~~~~G~-l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg---~vf~gt~dg~l~A~D~~tG~~  506 (599)
T 1w6s_A          440 PGPKGDRQNYEGLGQ-IKAYNAITGDYKWEKMERF---AVWGGTMATAGD---LVFYGTLDGYLKARDSDTGDL  506 (599)
T ss_dssp             ECTTSBTTTTBCCEE-EEEECTTTCCEEEEEEESS---CCCSBCEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             cCCcCCcccCCCcCe-EEEEECCCCCEEeEecCCC---CccCcceEecCC---EEEEECCCCeEEEEECCCCCE
Confidence                       2355 4689999999887764321   111111223444   788899999999999998875

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.59  E-value=5.5e-05  Score=66.30  Aligned_cols=232  Identities=13%  Similarity=0.078  Sum_probs=131.0

Q ss_pred             CeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEe---------------------eCCEEEEEEcCCCCeEEEEcC
Q 019349            9 PVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERA---------------------VGAFSIVEMLYSSSLLAIVGA   66 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~   66 (342)
                      ...+++|+++|+.+.++..+ .+..|+..+++...-..                     ......+.+......+.++..
T Consensus        20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~   99 (322)
T 2fp8_A           20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDC   99 (322)
T ss_dssp             CCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEET
T ss_pred             CceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEEC
Confidence            34578899999867777655 47888887765432111                     012233444432344555543


Q ss_pred             CCCCCCCCCeEEEEECCCCcEEEEEe--cC----CceEEEEEcC-Ce-EEEEE-C------------------CeEEEEE
Q 019349           67 GEQPSLSPRRLCLFNTTTGTALRELN--FL----TSILAVRLNK-KR-LVIVL-R------------------EKTYIYD  119 (342)
Q Consensus        67 g~~~~~~d~~i~iwd~~~~~~~~~~~--~~----~~v~~i~~~~-~~-~~~~~-d------------------~~i~i~d  119 (342)
                             .+.|..+|..+++. ..+.  ..    ....++++.+ +. ++++. .                  +.++.||
T Consensus       100 -------~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A          100 -------YYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             -------TTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             -------CCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence                   34588888765532 2221  11    2467888887 65 44443 1                  4688888


Q ss_pred             CCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc--eeEEEecccCCeeEEEECCCCCEEEEE
Q 019349          120 ANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH--SHCEIDAHQAPLAAIVLSSNGMYIATA  197 (342)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~dg~~lat~  197 (342)
                      ..+++..........+.   .++.++++..|.++.. ..+.|.+|++....  ....+..... ...|+++++|++.++.
T Consensus       172 ~~~~~~~~~~~~~~~p~---gia~~~dg~~lyv~d~-~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~  246 (322)
T 2fp8_A          172 PSTKETTLLLKELHVPG---GAEVSADSSFVLVAEF-LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSS  246 (322)
T ss_dssp             TTTTEEEEEEEEESCCC---EEEECTTSSEEEEEEG-GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEE
T ss_pred             CCCCEEEEeccCCccCc---ceEECCCCCEEEEEeC-CCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEe
Confidence            77665432222112222   3455667665555432 46889999987421  1122211223 7889999999977776


Q ss_pred             eC----------CCcEEEEEEcCCCeeEEEeccCcC--ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          198 SE----------QGTIIRVFLVSEATKSYSFRRGTY--PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       198 s~----------dg~~irlwd~~~~~~~~~~~~~~~--~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      ..          .+.+ ..+|. .|+.+..+.....  ...+.++++ .+++   ++++....+.|.+++++..
T Consensus       247 ~~~~~~~~~~~~~~~v-~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~---L~v~~~~~~~i~~~~~~~~  314 (322)
T 2fp8_A          247 SEELDGNMHGRVDPKG-IKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGL---LYIGTLFHGSVGILVYDKK  314 (322)
T ss_dssp             EEETTSSTTSCEEEEE-EEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTE---EEEECSSCSEEEEEEC---
T ss_pred             cCcccccccCCCccEE-EEECC-CCCEEEEEECCCCCccccceEEEE-eCCE---EEEeecCCCceEEEecccc
Confidence            54          3444 57776 5777666643211  123566666 4665   5666567888999998643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.58  E-value=6.8e-06  Score=77.19  Aligned_cols=186  Identities=9%  Similarity=-0.021  Sum_probs=126.1

Q ss_pred             CCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC--CceEEEEEc--C--CeEEEEE-------------------
Q 019349           57 SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL--TSILAVRLN--K--KRLVIVL-------------------  111 (342)
Q Consensus        57 ~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~i~~~--~--~~~~~~~-------------------  111 (342)
                      ++.++.+...      .++.|.+.|+.+.++...++.+  .....+++.  |  .+++++.                   
T Consensus       100 DG~~lfVnd~------~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~  173 (595)
T 1fwx_A          100 DGRFLFMNDK------ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANY  173 (595)
T ss_dssp             EEEEEEEEET------TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGE
T ss_pred             CCCEEEEEcC------CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCccccccccc
Confidence            3445555443      4778999999999988855543  467888862  3  3555553                   


Q ss_pred             CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC----------------------------------
Q 019349          112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT----------------------------------  157 (342)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------------------------  157 (342)
                      ++.+.+.|..+++...++....++.++ ++  ++++.++++++...                                  
T Consensus       174 ~~~vtvID~~t~~v~~qI~Vgg~pd~~-~~--spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~  250 (595)
T 1fwx_A          174 VNVFTAVDADKWEVAWQVLVSGNLDNC-DA--DYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  250 (595)
T ss_dssp             EEEEEEEETTTTEEEEEEEESSCCCCE-EE--CSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             CceEEEEECCCCeEEEEEEeCCCccce-EE--CCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCe
Confidence            247899999999999998775565544 33  44566666554321                                  


Q ss_pred             --ccEEEEEEccC--Cce-eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe------------eEEEecc
Q 019349          158 --KGSVLVYNVME--LHS-HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT------------KSYSFRR  220 (342)
Q Consensus       158 --~g~i~iwd~~~--~~~-~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~------------~~~~~~~  220 (342)
                        -+.|.|.|.++  ++. +..++.- ....++.++|||++++.++.....+.++|+.+.+            ...+...
T Consensus       251 ~~i~~V~VID~~~~~~~~~~~~Ipvg-~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v  329 (595)
T 1fwx_A          251 QELNGVKVVDGRKEASSLFTRYIPIA-NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL  329 (595)
T ss_dssp             EEETTEEEEECSGGGCCSSEEEEEEE-SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC
T ss_pred             eEECcEEEEeCcccCCceeEEEEecC-CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC
Confidence              12377777776  444 4555542 3457899999999988877544446799998653            2334433


Q ss_pred             CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          221 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      +.   ....++|+|||.   ...+.-.|++|.+||++.
T Consensus       330 G~---gP~h~aF~~dG~---aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          330 GL---GPLHTAFDGRGN---AYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             CS---CEEEEEECTTSE---EEEEETTTTEEEEEEHHH
T ss_pred             CC---CcceEEECCCCe---EEEEEecCCcEEEEEhhH
Confidence            32   257789999996   777888899999999976

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.54  E-value=4.5e-05  Score=71.66  Aligned_cols=235  Identities=9%  Similarity=0.006  Sum_probs=146.2

Q ss_pred             CCCCEEEEEcCCc--EEEEeCCCCcEEE--EEee-CCEEEEEE-c-CCCCeEEEEcCCCCC-----------CCCCCeEE
Q 019349           17 QDNSGFALSTKDG--FKIFDSSTGRLCY--ERAV-GAFSIVEM-L-YSSSLLAIVGAGEQP-----------SLSPRRLC   78 (342)
Q Consensus        17 ~d~~~la~g~~~g--~~v~d~~~~~~~~--~~~~-~~~~~~~~-~-~~~~~~~~~~~g~~~-----------~~~d~~i~   78 (342)
                      +||++|.+...+.  +.+.|+.+.+...  +... .....+.+ . ++..++...+....|           ...++.+-
T Consensus        99 ~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A           99 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             cCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            4999987765544  7899999987654  3321 33333444 3 567777555421111           01356899


Q ss_pred             EEECCCCcEEEEEecCCceEEEEEcCC--eEEEEE--C-------------------------------------CeEEE
Q 019349           79 LFNTTTGTALRELNFLTSILAVRLNKK--RLVIVL--R-------------------------------------EKTYI  117 (342)
Q Consensus        79 iwd~~~~~~~~~~~~~~~v~~i~~~~~--~~~~~~--d-------------------------------------~~i~i  117 (342)
                      ++|..+.+.+.++........+.++++  ..+++.  .                                     +.|.+
T Consensus       179 vID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~V  258 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKV  258 (595)
T ss_dssp             EEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEE
T ss_pred             EEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEE
Confidence            999999998888876444444555544  233333  1                                     23666


Q ss_pred             EECCC--Cce-eeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc------------eeEEEecccCCe
Q 019349          118 YDANT--LAI-LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH------------SHCEIDAHQAPL  182 (342)
Q Consensus       118 ~d~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~------------~~~~~~~h~~~v  182 (342)
                      .|..+  ++. +..+.....+.   ++..+||+.++++++. .+.+|.++|+.+.+            .+..++. ....
T Consensus       259 ID~~~~~~~~~~~~Ipvg~~Ph---Gv~~sPDGk~v~V~~~-~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v-G~gP  333 (595)
T 1fwx_A          259 VDGRKEASSLFTRYIPIANNPH---GCNMAPDKKHLCVAGK-LSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL-GLGP  333 (595)
T ss_dssp             EECSGGGCCSSEEEEEEESSCC---CEEECTTSSEEEEECT-TSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-CSCE
T ss_pred             EeCcccCCceeEEEEecCCCce---EEEEcCCCCEEEEeCC-CCCeEEEEECcccccccccccCcccceEEEcCC-CCCc
Confidence            67665  434 45554433332   3466788988888886 68999999998653            2333332 3456


Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEEEcCC----------CeeEEEeccCcCceeEE---EEEEecCCCcccEEEEEeCC-
Q 019349          183 AAIVLSSNGMYIATASEQGTIIRVFLVSE----------ATKSYSFRRGTYPSTIF---SLSFGQSMQFQDILVATSSS-  248 (342)
Q Consensus       183 ~~i~~s~dg~~lat~s~dg~~irlwd~~~----------~~~~~~~~~~~~~~~v~---~l~fs~d~~~~~~l~~~s~d-  248 (342)
                      ..++|+|||...++.-.|+++ -+||+.+          .+.+.++..+..+++..   ++.++|||+   +|++...- 
T Consensus       334 ~h~aF~~dG~aY~t~~ldsqV-~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk---~l~~~Nk~s  409 (595)
T 1fwx_A          334 LHTAFDGRGNAYTSLFLDSQV-VKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND---WLVCLSKFS  409 (595)
T ss_dssp             EEEEECTTSEEEEEETTTTEE-EEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS---EEEEEESCC
T ss_pred             ceEEECCCCeEEEEEecCCcE-EEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCC---EEEEcCCCC
Confidence            889999999444455567765 5899977          45667776554443322   235689999   88887542 


Q ss_pred             -CcE-----------EEEecCCCC
Q 019349          249 -GSL-----------HVFSPGFAI  260 (342)
Q Consensus       249 -g~i-----------~vwd~~~~~  260 (342)
                       ..+           .++|+...+
T Consensus       410 kdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          410 KDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             TTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             ccccccCCCCCCCcceEEEcCCCc
Confidence             234           899996554

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.53  E-value=6.2e-05  Score=71.77  Aligned_cols=194  Identities=13%  Similarity=0.029  Sum_probs=110.2

Q ss_pred             CCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEE--E-------EEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE
Q 019349           18 DNSGFALSTKDGFKIFDSSTGRLCYERAVGAFS--I-------VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (342)
Q Consensus        18 d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~--~-------~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~   88 (342)
                      ++..++++..+++.-+|..+|+++.+.....-.  .       .......+.+.+.+       .++.|..+|.++|+.+
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t-------~dg~l~AlD~~TG~~~  140 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGT-------LDASVVALNKNTGKVV  140 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEE-------TTTEEEEEESSSCCEE
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEe-------CCCEEEEEECCCCCEE
Confidence            444344444356788899999887665432100  0       00001123443333       3789999999999999


Q ss_pred             EEEecCC-----ceE-EEEEcCC------eEEEEE-------CCeEEEEECCCCceeeEEeCCCCCce-----E------
Q 019349           89 RELNFLT-----SIL-AVRLNKK------RLVIVL-------REKTYIYDANTLAILDTIDTVPNLKG-----L------  138 (342)
Q Consensus        89 ~~~~~~~-----~v~-~i~~~~~------~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~-----~------  138 (342)
                      .+.....     .+. .-.+..+      .+++..       ++.|+-+|..+++.+...........     .      
T Consensus       141 W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~  220 (582)
T 1flg_A          141 WKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGD  220 (582)
T ss_dssp             EEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSC
T ss_pred             eeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccc
Confidence            8876532     111 1111222      344432       57899999999998876654210000     0      


Q ss_pred             ----------------------------EEEeeCCCccEEEEeCC------------C----------CccEEEEEEccC
Q 019349          139 ----------------------------CAFSPSLNACFLAVPAS------------T----------TKGSVLVYNVME  168 (342)
Q Consensus       139 ----------------------------~~~~~~~~~~~l~~~~~------------~----------~~g~i~iwd~~~  168 (342)
                                                  ...+.+++...+.++..            .          ..+.|..+|..+
T Consensus       221 ~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~T  300 (582)
T 1flg_A          221 VKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSS  300 (582)
T ss_dssp             TTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTT
T ss_pred             cccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCC
Confidence                                        01122223233333221            0          116899999999


Q ss_pred             CceeEEEec--cc--------CCeeEEEEC-CCCC---EEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349          169 LHSHCEIDA--HQ--------APLAAIVLS-SNGM---YIATASEQGTIIRVFLVSEATKSYSFRR  220 (342)
Q Consensus       169 ~~~~~~~~~--h~--------~~v~~i~~s-~dg~---~lat~s~dg~~irlwd~~~~~~~~~~~~  220 (342)
                      ++.+-.++.  |.        .++. +... .+|+   .|+.++.+|.+ .++|..+|+.+..+..
T Consensus       301 G~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l-~~lD~~tG~~lw~~~~  364 (582)
T 1flg_A          301 GEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFF-YVVDRSNGKLQNAFPF  364 (582)
T ss_dssp             CCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEE-EEEETTTCCEEEEEES
T ss_pred             CCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceE-EEEECCCCCEeccccc
Confidence            998866643  32        1221 2222 5774   78889999975 7999999999877643

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.48  E-value=0.00041  Score=58.84  Aligned_cols=216  Identities=6%  Similarity=-0.060  Sum_probs=126.5

Q ss_pred             CeEEEEEcCCCCEEEEEc-CC-cEEEEeCCCCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            9 PVFFVSFNQDNSGFALST-KD-GFKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~-~~-g~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      .+.+++|++++..|..+. .. .+.+++++..........  .....+.+.+..+.+.++..      ..+.|.++|...
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~------~~~~I~~~~~~g  110 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS------QLDRIEVAKMDG  110 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET------TTTEEEEEETTS
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEEC------CCCEEEEEEcCC
Confidence            356899999877766554 33 478889876543222211  23344555555566655554      367899999864


Q ss_pred             CcEEEEEecC-CceEEEEEcC--CeEEEEE-C---CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           85 GTALRELNFL-TSILAVRLNK--KRLVIVL-R---EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        85 ~~~~~~~~~~-~~v~~i~~~~--~~~~~~~-d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      .......... .....+++++  ..++++. .   +.|..+++... ....+.. ........++.++++..|..+.. .
T Consensus       111 ~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~-~~~~~~~-~~~~~P~gia~d~~~~~lyv~d~-~  187 (267)
T 1npe_A          111 TQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT-NRRILAQ-DNLGLPNGLTFDAFSSQLCWVDA-G  187 (267)
T ss_dssp             CSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC-CCEEEEC-TTCSCEEEEEEETTTTEEEEEET-T
T ss_pred             CCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCC-CcEEEEE-CCCCCCcEEEEcCCCCEEEEEEC-C
Confidence            4322222222 3578899987  3455555 2   47888887532 2233321 11123445566665555555544 4


Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCC
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (342)
                      .+.|.++|.........+..- .....|++.  +..|..+...+..|..+|..+++.+..+..+.. .....+++.|++.
T Consensus       188 ~~~I~~~~~~g~~~~~~~~~~-~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~-~~p~gi~~~~~~~  263 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVLEGL-QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIALSQC  263 (267)
T ss_dssp             TTEEEEEETTEEEEEEEEECC-CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEECSCC
T ss_pred             CCEEEEEecCCCceEEEecCC-CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEccccc-cccceeeecCccC
Confidence            689999998765443333332 233567664  455555554433367999999998888864421 1356788888864

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=98.43  E-value=0.0009  Score=60.17  Aligned_cols=219  Identities=13%  Similarity=0.183  Sum_probs=145.5

Q ss_pred             EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEE-cCCeEE
Q 019349           30 FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKRLV  108 (342)
Q Consensus        30 ~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~~~  108 (342)
                      +.|-|+.+........... ...-|.+..+.+++-++        +++.|+|+++.+.+..+.++..|.=-.| +++.+.
T Consensus        50 vvIiDl~~~~~~~rrpi~A-dsAIMnP~~~iiALrag--------~~lQiFnle~K~klks~~~~e~VvfWkWis~~~l~  120 (494)
T 1bpo_A           50 VVIIDMNDPSNPIRRPISA-DSAIMNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA  120 (494)
T ss_dssp             EEEEETTSTTSCEEEECCC-SEEEECSSSSCEEEEET--------TEEEEEETTTTEEEEEEECSSCCCEEEEEETTEEE
T ss_pred             EEEEECCCCCcceeccccc-ceeeeCCCCcEEEEecC--------CeEEEEchHHhhhhcceecCCCceEEEecCCCeEE
Confidence            6777877654332222211 22345667778887764        6999999999999999998887766555 788888


Q ss_pred             EEECCeEEEEECCCC-ceeeEEeCCCC--CceEEEEeeCCCccEEEEeCC-----CCccEEEEEEccCCceeEEEecccC
Q 019349          109 IVLREKTYIYDANTL-AILDTIDTVPN--LKGLCAFSPSLNACFLAVPAS-----TTKGSVLVYNVMELHSHCEIDAHQA  180 (342)
Q Consensus       109 ~~~d~~i~i~d~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~-----~~~g~i~iwd~~~~~~~~~~~~h~~  180 (342)
                      ++++..|+-|++... .+++-++.+.+  ...++.+..+++..+++..|-     ...|.+++|..+.. ..+.+++|..
T Consensus       121 lVT~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa  199 (494)
T 1bpo_A          121 LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA  199 (494)
T ss_dssp             EECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEE
T ss_pred             EEcCCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeee
Confidence            899999999999643 45555554432  356778888888888876651     13588999998764 4567888887


Q ss_pred             CeeEEEECCCC---CEEEEEeCC--CcEEEEEEcCCC--------eeEEEeccC--cCceeEEEEEEecCCCcccEEEEE
Q 019349          181 PLAAIVLSSNG---MYIATASEQ--GTIIRVFLVSEA--------TKSYSFRRG--TYPSTIFSLSFGQSMQFQDILVAT  245 (342)
Q Consensus       181 ~v~~i~~s~dg---~~lat~s~d--g~~irlwd~~~~--------~~~~~~~~~--~~~~~v~~l~fs~d~~~~~~l~~~  245 (342)
                      ....+.+..+.   +.++-+...  |.-+++-++...        ++...+.-.  ....-..+|..|+...   .+..-
T Consensus       200 ~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kyg---viyvi  276 (494)
T 1bpo_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVFLI  276 (494)
T ss_dssp             EEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTT---EEEEE
T ss_pred             eeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCC---EEEEE
Confidence            66555553221   244544432  223578887432        111111111  1112245688888877   89999


Q ss_pred             eCCCcEEEEecCCCCC
Q 019349          246 SSSGSLHVFSPGFAIN  261 (342)
Q Consensus       246 s~dg~i~vwd~~~~~~  261 (342)
                      +.-|.|++||++++..
T Consensus       277 TK~G~i~lyDleTgt~  292 (494)
T 1bpo_A          277 TKYGYIHLYDLETGTC  292 (494)
T ss_dssp             ETTSEEEEEETTTCCE
T ss_pred             ecCceEEEEeccccee
Confidence            9999999999998875

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.42  E-value=0.0019  Score=63.93  Aligned_cols=232  Identities=11%  Similarity=0.109  Sum_probs=142.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEe----------eCCEEEEEEcCCCCeEEEEcCCCCCCCCCC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA----------VGAFSIVEMLYSSSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~   75 (342)
                      ....|.++...++|..-+.....|+..|+..+++...-..          ...+..+.....++.+.+.+.       ++
T Consensus       355 ~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~-------~~  427 (795)
T 4a2l_A          355 SDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTH-------AG  427 (795)
T ss_dssp             SCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEET-------TT
T ss_pred             CCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeC-------cC
Confidence            3457999999999985553344589999988775543211          123333333333442544442       46


Q ss_pred             eEEEEECCCCcEEEEEe-----cCCceEEEEEcCC-eEEEEECCeEEEEECCCCceeeEEeC----CCCCceEEEEeeCC
Q 019349           76 RLCLFNTTTGTALRELN-----FLTSILAVRLNKK-RLVIVLREKTYIYDANTLAILDTIDT----VPNLKGLCAFSPSL  145 (342)
Q Consensus        76 ~i~iwd~~~~~~~~~~~-----~~~~v~~i~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~  145 (342)
                      -|.++|..+++...-..     ....|.++...++ .+.+++.+-+.+||..+++.......    ......+.++..++
T Consensus       428 Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~  507 (795)
T 4a2l_A          428 GLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS  507 (795)
T ss_dssp             EEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT
T ss_pred             ceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECC
Confidence            79999988876433221     1246888888764 56777777899999887644322111    01123466777777


Q ss_pred             CccEEEEeCCCCccEEEEEEccCCceeEEEe-------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349          146 NACFLAVPASTTKGSVLVYNVMELHSHCEID-------AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF  218 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-------~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~  218 (342)
                      ++.+.+...    +.+..||..+.+.  .+.       .+...|.+|..+++|++.++.. .| + ..||..+++. ..+
T Consensus       508 ~g~lWigt~----~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l-~~~d~~~~~~-~~~  577 (795)
T 4a2l_A          508 HKRLWIGGE----EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-F-YCFNEKDKQI-KRY  577 (795)
T ss_dssp             TCCEEEEES----SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-E-EEEETTTTEE-EEE
T ss_pred             CCCEEEEeC----CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-c-eeECCCCCcE-EEe
Confidence            776665442    3488899877654  222       2345799999999998655443 45 4 5899877654 333


Q ss_pred             cc--CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          219 RR--GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       219 ~~--~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      ..  +.....|.++...+++.   +.+ ++. +-|..|+.++.
T Consensus       578 ~~~~gl~~~~i~~i~~d~~g~---lWi-~t~-~Gl~~~~~~~~  615 (795)
T 4a2l_A          578 NTTNGLPNNVVYGILEDSFGR---LWL-STN-RGISCFNPETE  615 (795)
T ss_dssp             CGGGTCSCSCEEEEEECTTSC---EEE-EET-TEEEEEETTTT
T ss_pred             CCCCCCchhheEEEEECCCCC---EEE-EcC-CceEEEcCCCC
Confidence            21  11123488899888887   444 444 45777886543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.37  E-value=0.00035  Score=61.38  Aligned_cols=177  Identities=14%  Similarity=0.168  Sum_probs=113.4

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--------EEEEE--C---CeEEEEECC-CCceeeEEe-------C
Q 019349           73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--------LVIVL--R---EKTYIYDAN-TLAILDTID-------T  131 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--------~~~~~--d---~~i~i~d~~-~~~~~~~~~-------~  131 (342)
                      ..+-+.++|+ +|+.+..+.. ..+..+.+-+..        +++++  +   ++|.+|++. ..+.+..+.       +
T Consensus        48 k~~gL~Vydl-~G~~l~~~~~-g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~~~pv~t  125 (355)
T 3amr_A           48 KKSGLVVYSL-DGKMLHSYNT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDPDHPIAT  125 (355)
T ss_dssp             TTTEEEEEET-TSCEEEEECC-SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCTTSCEEC
T ss_pred             CCCCEEEEcC-CCcEEEEccC-CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccccccCcCC
Confidence            3578999999 8999988864 566666665543        44555  4   589999773 222344442       2


Q ss_pred             C-CCCceEEEEeeCCCcc-EEEEeCCCCccEEEEEEcc-------CCceeEEEecccCCeeEEEECCCCCEEEEEeCCCc
Q 019349          132 V-PNLKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVM-------ELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGT  202 (342)
Q Consensus       132 ~-~~~~~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~-------~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~  202 (342)
                      . ..+.++|.+.....+. +++..+  .+|.+..|++.       +.+.+++|.. .+.+..+++.+...+|..+-++-.
T Consensus       126 ~~~~pyGlcly~~~~~g~~yafV~~--k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~eEd~G  202 (355)
T 3amr_A          126 AINEVYGFTLYHSQKTGKYYAMVTG--KEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIAEEDEA  202 (355)
T ss_dssp             CCSSCCCEEEEECTTTCCEEEEEEC--SSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTE
T ss_pred             CCCCeeEEEEEecCCCCcEEEEEEC--CCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEecccce
Confidence            2 3445554443222343 455555  57999999983       3356677765 356888899998899999999854


Q ss_pred             EEEEEEcC-----CCeeEEEeccCcCceeEEEEEE--ecCCCcccEEEEEe-CCCcEEEEecC
Q 019349          203 IIRVFLVS-----EATKSYSFRRGTYPSTIFSLSF--GQSMQFQDILVATS-SSGSLHVFSPG  257 (342)
Q Consensus       203 ~irlwd~~-----~~~~~~~~~~~~~~~~v~~l~f--s~d~~~~~~l~~~s-~dg~i~vwd~~  257 (342)
                       |..+|.+     +++.+..+..+.-...+..|++  .++++  .+|++++ .+++..|||.+
T Consensus       203 -Iw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~--gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          203 -IWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGK--GYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             -EEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGC--EEEEEEEGGGTEEEEEESS
T ss_pred             -EEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCC--EEEEEEcCCCCEEEEEECC
Confidence             4456644     3556655533322335788888  45444  2666666 57799999986

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.36  E-value=0.00033  Score=69.32  Aligned_cols=231  Identities=10%  Similarity=0.025  Sum_probs=139.8

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEee---------CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAV---------GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      ...|.++...++|... +|+.+|+.+||..+++...-...         ..+..+.....+ .+.+.+       .++-|
T Consensus       262 ~~~i~~i~~d~~g~lW-igt~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g-~lWigt-------~~~Gl  332 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLW-IGTFNDLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQG-GMWLGT-------YFGGL  332 (795)
T ss_dssp             CSBEEEEEECTTSCEE-EEESSCEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTS-CEEEEE-------SSSCE
T ss_pred             CCeEEEEEEcCCCCEE-EEeCChhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCc-CEEEEE-------CCCCe
Confidence            4679999999999854 45566999999887765432211         223333332222 333333       24678


Q ss_pred             EEEECCCCcEEEEEec--------CCceEEEEEcCC-eEEEEEC-CeEEEEECCCCceeeEEeCC------CCCceEEEE
Q 019349           78 CLFNTTTGTALRELNF--------LTSILAVRLNKK-RLVIVLR-EKTYIYDANTLAILDTIDTV------PNLKGLCAF  141 (342)
Q Consensus        78 ~iwd~~~~~~~~~~~~--------~~~v~~i~~~~~-~~~~~~d-~~i~i~d~~~~~~~~~~~~~------~~~~~~~~~  141 (342)
                      ..+|..+++.. .+..        ...|.++...++ .+.++++ +-+..|+..+++...-....      .....+.++
T Consensus       333 ~~~~~~~~~~~-~~~~~~~~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i  411 (795)
T 4a2l_A          333 NYYHPIRNRFK-NIRNIPYKNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAV  411 (795)
T ss_dssp             EEECGGGGSSE-EECCCTTSSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEE
T ss_pred             EEeCCCcccce-EEcCCCCCCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEE
Confidence            88887655422 2211        236889988766 5677774 58999998776543221111      112356777


Q ss_pred             eeCCCcc-EEEEeCCCCccEEEEEEccCCceeEEEe----cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE
Q 019349          142 SPSLNAC-FLAVPASTTKGSVLVYNVMELHSHCEID----AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY  216 (342)
Q Consensus       142 ~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~~~~~~~----~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~  216 (342)
                      ..++++. +.+..   .++-|..||..+++......    .+...|.++...++|++.+.. ..| + .+||..+++.. 
T Consensus       412 ~~d~~g~~lWigt---~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l-~~~~~~~~~~~-  484 (795)
T 4a2l_A          412 YVDEKKSLVYIGT---HAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-L-VRFNPEQRSFT-  484 (795)
T ss_dssp             EEETTTTEEEEEE---TTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-E-EEEETTTTEEE-
T ss_pred             EEcCCCCEEEEEe---CcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-e-eEEeCCCCeEE-
Confidence            7777776 44432   23559999988765432211    234579999999998865554 455 4 58998877543 


Q ss_pred             EeccC-----cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          217 SFRRG-----TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       217 ~~~~~-----~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      .+...     .....|.++...+++.   +.+ |+. +-+..||.++.
T Consensus       485 ~~~~~~~~~~~~~~~i~~i~~d~~g~---lWi-gt~-~Gl~~~~~~~~  527 (795)
T 4a2l_A          485 TIEKEKDGTPVVSKQITTLFRDSHKR---LWI-GGE-EGLSVFKQEGL  527 (795)
T ss_dssp             ECCBCTTCCBCCCCCEEEEEECTTCC---EEE-EES-SCEEEEEEETT
T ss_pred             EccccccccccCCceEEEEEECCCCC---EEE-EeC-CceEEEeCCCC
Confidence            23211     1124589999999987   444 444 56888887543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.34  E-value=0.0011  Score=57.47  Aligned_cols=226  Identities=10%  Similarity=0.044  Sum_probs=123.2

Q ss_pred             CCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349            8 YPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      .....++|+++|+.+++...+ .+..||.+..........+....+.+..+.+. .++..+.    ....|..+|..+++
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~gia~~~dG~l-~vad~~~----~~~~v~~~d~~~g~  106 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDL-VATGWNA----DSIPVVSLVKSDGT  106 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCE-EEEEECT----TSCEEEEEECTTSC
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCceeEEEcCCCcE-EEEeccC----CcceEEEEcCCCCe
Confidence            456789999999966666444 46888876543222212233334555556554 3333210    11247777877777


Q ss_pred             EEEEEecCC--ceEEEEEcCCeE-EEEE--CCeEEEEECCCCce-eeEEe------C-CCCCceEEEEeeCCCccEEEEe
Q 019349           87 ALRELNFLT--SILAVRLNKKRL-VIVL--REKTYIYDANTLAI-LDTID------T-VPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        87 ~~~~~~~~~--~v~~i~~~~~~~-~~~~--d~~i~i~d~~~~~~-~~~~~------~-~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      .......+.  ....++..++.. +++.  .+.|+++|...++. +....      . .........+++  ++..|.++
T Consensus       107 ~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~--dg~~lyv~  184 (306)
T 2p4o_A          107 VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--FGNFLYVS  184 (306)
T ss_dssp             EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--ETTEEEEE
T ss_pred             EEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCcCc--CCCEEEEE
Confidence            544333322  233444444443 4443  56888888765421 11110      0 011112233443  44455555


Q ss_pred             CCCCccEEEEEEccC-Cce--eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE--EeccCcCceeEE
Q 019349          154 ASTTKGSVLVYNVME-LHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY--SFRRGTYPSTIF  228 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~-~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~--~~~~~~~~~~v~  228 (342)
                      .. ..+.|..+|+.. ++.  ...+.. ......|+++++|++.++....+++ .++|.. |+...  .+..+  .....
T Consensus       185 d~-~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V-~~~~~~-G~~~~~~~~~~~--~~~p~  258 (306)
T 2p4o_A          185 NT-EKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSV-VRIAPD-RSTTIIAQAEQG--VIGST  258 (306)
T ss_dssp             ET-TTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCE-EEECTT-CCEEEEECGGGT--CTTEE
T ss_pred             eC-CCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeE-EEECCC-CCEEEEeecccc--cCCce
Confidence            43 578999999864 321  122211 1345778999999887776666775 688874 65432  23211  13478


Q ss_pred             EEEEe---cCCCcccEEEEEeCCC
Q 019349          229 SLSFG---QSMQFQDILVATSSSG  249 (342)
Q Consensus       229 ~l~fs---~d~~~~~~l~~~s~dg  249 (342)
                      +++|.   ||+.   .|.+++..+
T Consensus       259 ~~a~~g~~~d~~---~LyVt~~~~  279 (306)
T 2p4o_A          259 AVAFGQTEGDCT---AIYVVTNGG  279 (306)
T ss_dssp             EEEECCSTTTTT---EEEEEECTT
T ss_pred             EEEEecccCCCC---EEEEECCCC
Confidence            99998   8876   666665543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.34  E-value=0.00084  Score=63.92  Aligned_cols=234  Identities=11%  Similarity=0.134  Sum_probs=135.7

Q ss_pred             CCEEEEEcCCc-EEEEeCCCCcEEEEEeeCC------E---EEEE-EcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349           19 NSGFALSTKDG-FKIFDSSTGRLCYERAVGA------F---SIVE-MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (342)
Q Consensus        19 ~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~------~---~~~~-~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~   87 (342)
                      +..+.+++.++ +.-+|..+|+++.+.....      +   ..+. -.......++++........++.|.-+|.++|+.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            34566666555 6888999998886654321      1   1111 0011121344432100000267999999999999


Q ss_pred             EEEEecCCce------------------------------------------EEEEEc--CCeEEEEEC-----------
Q 019349           88 LRELNFLTSI------------------------------------------LAVRLN--KKRLVIVLR-----------  112 (342)
Q Consensus        88 ~~~~~~~~~v------------------------------------------~~i~~~--~~~~~~~~d-----------  112 (342)
                      +.........                                          ..++++  .+.+++...           
T Consensus       197 ~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~  276 (582)
T 1flg_A          197 IWMRPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWART  276 (582)
T ss_dssp             EEEEESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGS
T ss_pred             EeecCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccc
Confidence            8876542100                                          012222  234555441           


Q ss_pred             --------------CeEEEEECCCCceeeEEeCCCCC-------ceEEEEeeC-CCc---cEEEEeCCCCccEEEEEEcc
Q 019349          113 --------------EKTYIYDANTLAILDTIDTVPNL-------KGLCAFSPS-LNA---CFLAVPASTTKGSVLVYNVM  167 (342)
Q Consensus       113 --------------~~i~i~d~~~~~~~~~~~~~~~~-------~~~~~~~~~-~~~---~~l~~~~~~~~g~i~iwd~~  167 (342)
                                    +.|..+|..+++.+..++...+.       ...+.+... .++   ..++.++  .+|.+.++|..
T Consensus       277 ~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~--~~G~l~~lD~~  354 (582)
T 1flg_A          277 AKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHAD--RNGFFYVVDRS  354 (582)
T ss_dssp             CTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEEC--TTSEEEEEETT
T ss_pred             cCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEEC--CCceEEEEECC
Confidence                          47999999999999888664321       111222211 234   2455555  68999999999


Q ss_pred             CCceeEEEeccc-------------CCe--------------------------------eEEEECCCCCEEEEEe----
Q 019349          168 ELHSHCEIDAHQ-------------APL--------------------------------AAIVLSSNGMYIATAS----  198 (342)
Q Consensus       168 ~~~~~~~~~~h~-------------~~v--------------------------------~~i~~s~dg~~lat~s----  198 (342)
                      +++.+..++...             .++                                ..++++|+..++....    
T Consensus       355 tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~  434 (582)
T 1flg_A          355 NGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWK  434 (582)
T ss_dssp             TCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEE
T ss_pred             CCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcc
Confidence            998876554321             000                                1356777655555443    


Q ss_pred             -----------------------------CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC
Q 019349          199 -----------------------------EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG  249 (342)
Q Consensus       199 -----------------------------~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg  249 (342)
                                                   .+|. +.-||+.+|+.+.+...+.   .+..-.+...+.   +++.++.||
T Consensus       435 ~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~-l~A~D~~tG~~~W~~~~~~---~~~~g~~~tagg---lvf~g~~dg  507 (582)
T 1flg_A          435 EDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGS-LRAMDPVSGKVVWEHKEHL---PLWAGVLATAGN---LVFTGTGDG  507 (582)
T ss_dssp             EEEEECCCCCCTTSCCCCEEEEEEESCSSCSEE-EEEECTTTCCEEEEEEESS---CCCSCCEEETTT---EEEEECTTS
T ss_pred             eeeecccccccCCCceeccceeecCCCCCCcce-EEEEECCCCCEEEEecCCC---CCcccceEeCCC---EEEEECCCC
Confidence                                         2465 4699999999887765332   111111222344   788899999


Q ss_pred             cEEEEecCCCCC
Q 019349          250 SLHVFSPGFAIN  261 (342)
Q Consensus       250 ~i~vwd~~~~~~  261 (342)
                      .++.||.++++.
T Consensus       508 ~l~A~D~~tG~~  519 (582)
T 1flg_A          508 YFKAFDAKSGKE  519 (582)
T ss_dssp             EEEEEETTTCCE
T ss_pred             cEEEEECCCCCE
Confidence            999999998875

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.29  E-value=5.7e-05  Score=73.29  Aligned_cols=186  Identities=10%  Similarity=0.056  Sum_probs=120.4

Q ss_pred             CCeEEEEECCCCcEEEEEecCCc------------eEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEE
Q 019349           74 PRRLCLFNTTTGTALRELNFLTS------------ILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCA  140 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~------------v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  140 (342)
                      ++.|..+|..+|+.+.++.....            -..+.+..+.+++.+ ++.++.+|..+++.+.++......... .
T Consensus        75 ~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~-~  153 (668)
T 1kv9_A           75 WSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPY-S  153 (668)
T ss_dssp             GGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSC-B
T ss_pred             CCeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcc-e
Confidence            67899999999999998865431            123445566666666 889999999999999887653211000 0


Q ss_pred             EeeCC---CccEEEEeCCC----CccEEEEEEccCCceeEEEecc-------------------------------cCCe
Q 019349          141 FSPSL---NACFLAVPAST----TKGSVLVYNVMELHSHCEIDAH-------------------------------QAPL  182 (342)
Q Consensus       141 ~~~~~---~~~~l~~~~~~----~~g~i~iwd~~~~~~~~~~~~h-------------------------------~~~v  182 (342)
                      +...|   ++ .++++...    .+|.|..+|..+++.+-.+...                               ....
T Consensus       154 ~~~~P~v~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w  232 (668)
T 1kv9_A          154 ITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVW  232 (668)
T ss_dssp             CCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCC
T ss_pred             ecCCCEEECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccc
Confidence            00011   23 33333210    2589999999999987666421                               0112


Q ss_pred             eEEEECCCCCEEEEEeCCCc------------------EEEEEEcCCCeeEEEeccCcCc-------eeEEEEEEecCCC
Q 019349          183 AAIVLSSNGMYIATASEQGT------------------IIRVFLVSEATKSYSFRRGTYP-------STIFSLSFGQSMQ  237 (342)
Q Consensus       183 ~~i~~s~dg~~lat~s~dg~------------------~irlwd~~~~~~~~~~~~~~~~-------~~v~~l~fs~d~~  237 (342)
                      ..++++|++.+++.++.++.                  .|..+|..+|+.+..++...+.       .+.....+..+++
T Consensus       233 ~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~  312 (668)
T 1kv9_A          233 DSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGK  312 (668)
T ss_dssp             SCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTE
T ss_pred             cceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCc
Confidence            34789998889988887653                  2469999999999888653221       2222223334553


Q ss_pred             cccEEEEEeCCCcEEEEecCCCCC
Q 019349          238 FQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       238 ~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      ....++.++.+|.++++|.++++.
T Consensus       313 ~~~~v~~~~~~G~l~~lD~~tG~~  336 (668)
T 1kv9_A          313 PRKVLMQAPKNGFFYVLDRTNGKL  336 (668)
T ss_dssp             EEEEEEECCTTSEEEEEETTTCCE
T ss_pred             EEEEEEEECCCCEEEEEECCCCCE
Confidence            112588899999999999888764

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.17  E-value=0.0017  Score=64.08  Aligned_cols=234  Identities=13%  Similarity=0.062  Sum_probs=139.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEe-----------eCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA-----------VGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (342)
                      +...|.++...++|..-+....+|+..|+..+.....-..           ...+..+....+ ..+.+.+.       +
T Consensus       311 ~~~~v~~i~~D~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~-g~lWigt~-------~  382 (781)
T 3v9f_A          311 SNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQ-GKLWIGTD-------G  382 (781)
T ss_dssp             SSSCEEEEEECSSCCEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTT-SCEEEEEB-------S
T ss_pred             CCCeEEEEEEeCCCCEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCC-CCEEEEeC-------C
Confidence            3457999999999985544447889999987664332211           122333332222 33444432       4


Q ss_pred             CeEEEEECCCCcEEEEE---ec-CCceEEEEEcC-CeEEEEE-CCeEEEEECCCCceeeEEeC-CCCCceEEEEeeCCCc
Q 019349           75 RRLCLFNTTTGTALREL---NF-LTSILAVRLNK-KRLVIVL-REKTYIYDANTLAILDTIDT-VPNLKGLCAFSPSLNA  147 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~---~~-~~~v~~i~~~~-~~~~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  147 (342)
                      +-|..+|..+++...-.   .. ...|.++...+ ..+.+++ ++-+..++..+++.. .+.. ......+.++..++++
T Consensus       383 ~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g  461 (781)
T 3v9f_A          383 GGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNK  461 (781)
T ss_dssp             SCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTS
T ss_pred             CcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCC
Confidence            56888887654322110   11 24688888874 4577777 468999998776432 2221 1123457778777777


Q ss_pred             cEEEEeCCCCccEEEEEEccCCceeEEEecc-----cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc--
Q 019349          148 CFLAVPASTTKGSVLVYNVMELHSHCEIDAH-----QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR--  220 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h-----~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~--  220 (342)
                      .+.+...    +.|..||..+++........     ...|.+|...++|++.+.....| + ..+|..+++. ..+..  
T Consensus       462 ~lwigt~----~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l-~~~~~~~~~~-~~~~~~~  534 (781)
T 3v9f_A          462 KIWIGTH----AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-V-GIYTPDMQLV-RKFNQYE  534 (781)
T ss_dssp             EEEEEET----TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-E-EEECTTCCEE-EEECTTT
T ss_pred             CEEEEEC----CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-E-EEEeCCCCeE-EEccCCC
Confidence            6655432    44889998776543322222     36799999999998665443355 5 4788876643 33422  


Q ss_pred             CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          221 GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       221 ~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      +.....|.++...+++.    |..++.+|-|..||.++.
T Consensus       535 ~l~~~~i~~i~~d~~g~----lWi~T~~Glv~~~d~~~~  569 (781)
T 3v9f_A          535 GFCSNTINQIYRSSKGQ----MWLATGEGLVCFPSARNF  569 (781)
T ss_dssp             TCSCSCEEEEEECTTSC----EEEEETTEEEEESCTTTC
T ss_pred             CCCCCeeEEEEECCCCC----EEEEECCCceEEECCCCC
Confidence            11123589999888887    444555666588887654

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.15  E-value=0.004  Score=55.99  Aligned_cols=235  Identities=6%  Similarity=-0.074  Sum_probs=135.1

Q ss_pred             EEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEE
Q 019349           11 FFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR   89 (342)
Q Consensus        11 ~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~   89 (342)
                      .|.+..+ ..+|+.+....++.+++.......... ......+.+....+.+.++..      ..+.|..++...+....
T Consensus        80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~------~~~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV------TLDRILRANLNGSNVEE  152 (386)
T ss_dssp             CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCCEEE
T ss_pred             eECCccc-cceeEeecCccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeC------CCCcEEEEecCCCCcEE
Confidence            3555555 345666777778888887664433222 234445666666666666654      36789999987665433


Q ss_pred             EEecC-CceEEEEEc--CCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEE
Q 019349           90 ELNFL-TSILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVY  164 (342)
Q Consensus        90 ~~~~~-~~v~~i~~~--~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iw  164 (342)
                      .+... ....+++++  ...++++.  .+.|.+.++........+...  ......++.+|.+..|..+.....+.|..+
T Consensus       153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~--l~~P~giavdp~~g~ly~td~~~~~~I~r~  230 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS--LEKPRAIALHPMEGTIYWTDWGNTPRIEAS  230 (386)
T ss_dssp             EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSS--CSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCC--CCCCcEEEEEcCCCeEEEeccCCCCEEEEE
Confidence            33221 234566665  34555555  458888887644322222221  122344455554445555543123789999


Q ss_pred             EccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEE
Q 019349          165 NVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVA  244 (342)
Q Consensus       165 d~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~  244 (342)
                      ++............-...+.|+|+|++..|..+......|..+|+..... ..+... .......|++ .++.   ++.+
T Consensus       231 ~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~-~~~~P~giav-~~~~---ly~t  304 (386)
T 3v65_B          231 SMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHR-KAVISQ-GLPHPFAITV-FEDS---LYWT  304 (386)
T ss_dssp             ETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSC-EEEECS-SCSSEEEEEE-ETTE---EEEE
T ss_pred             eCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCee-EEEEEC-CCCCceEEEE-ECCE---EEEe
Confidence            87654333333333445789999987777777665555567888754332 222221 1234677888 3444   6667


Q ss_pred             EeCCCcEEEEecCCCC
Q 019349          245 TSSSGSLHVFSPGFAI  260 (342)
Q Consensus       245 ~s~dg~i~vwd~~~~~  260 (342)
                      -...+.|..++..+++
T Consensus       305 d~~~~~V~~~~~~~G~  320 (386)
T 3v65_B          305 DWHTKSINSANKFTGK  320 (386)
T ss_dssp             ETTTTEEEEEETTTCC
T ss_pred             eCCCCeEEEEECCCCc
Confidence            7778889998854443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.08  E-value=0.011  Score=58.36  Aligned_cols=234  Identities=10%  Similarity=0.003  Sum_probs=138.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCC-cEEEEeCCCCcEEEEE-e---e-----CCEEEEEEcCC-CCeEEEEcCCCCCCCCCC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKD-GFKIFDSSTGRLCYER-A---V-----GAFSIVEMLYS-SSLLAIVGAGEQPSLSPR   75 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~-g~~v~d~~~~~~~~~~-~---~-----~~~~~~~~~~~-~~~~~~~~~g~~~~~~d~   75 (342)
                      ...|.++.-.++|..|-+|+.+ |+..||..+.+...-. .   .     ..+..+..... ...+.+.+.       .+
T Consensus        65 ~n~I~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~lwi~t~-------~~  137 (781)
T 3v9f_A           65 GNELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTY-------YR  137 (781)
T ss_dssp             CSCEEEEEECSSSSEEEEEESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSEEEEEES-------SS
T ss_pred             ccccceEEEcCCCCEEEEEeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCCEEEEEC-------CC
Confidence            4579999999999845567777 9999999877654321 1   0     12333332220 234444432       35


Q ss_pred             eEEEEECCCCcEEEEEec-------CCceEEEEEc-CCeEEEEECC-eEEEEECCCCceeeEEeC-CC-----CCceEEE
Q 019349           76 RLCLFNTTTGTALRELNF-------LTSILAVRLN-KKRLVIVLRE-KTYIYDANTLAILDTIDT-VP-----NLKGLCA  140 (342)
Q Consensus        76 ~i~iwd~~~~~~~~~~~~-------~~~v~~i~~~-~~~~~~~~d~-~i~i~d~~~~~~~~~~~~-~~-----~~~~~~~  140 (342)
                      .|..+|.++++.. .+..       ...|.++... ...+.+++.+ -+..||..+.+... +.. ..     ....+.+
T Consensus       138 gl~~~~~~~~~~~-~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~~~Gl~~~~~~~~~~~~-~~~~~~~~~~l~~~~i~~  215 (781)
T 3v9f_A          138 GIEYLDIATGKFT-HYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKH-FVHDPQNPNSLPGNDVRC  215 (781)
T ss_dssp             CEEEEETTTTEEE-EESTTTCTTCSCCCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEE-ECC--------CCSSEEE
T ss_pred             CeeEEECCCCeEE-eeccCcccCCCccceEEEEECCCCCEEEEecCCCeEEEcCCCCceEe-eecCCCCcccCCCCceeE
Confidence            6888998766543 3321       2357888775 4567777744 89999987764432 211 00     1234667


Q ss_pred             EeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe-------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe
Q 019349          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID-------AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  213 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-------~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~  213 (342)
                      +..++++.+.+...   + -+.+||..+.+......       .....|.+|...++|.+. .|+..+.+ .++|..+++
T Consensus       216 i~~d~~g~lwigt~---~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~~Gl-~~~~~~~~~  289 (781)
T 3v9f_A          216 IYKDTNGNIWIGTS---K-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLW-IATELNGI-MILDLQQNQ  289 (781)
T ss_dssp             EEECTTCCEEEEET---T-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEE-EEESSSCE-EEEETTCC-
T ss_pred             EEEcCCCCEEEEeC---C-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEE-EEeCCCCe-EEECCCCCe
Confidence            77777776666543   3 48999987665332111       123569999998888754 45552334 589987765


Q ss_pred             eEEEec------------cCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          214 KSYSFR------------RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       214 ~~~~~~------------~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      ...-..            .......|.++...+++.    |-.|+.++-|..|+....
T Consensus       290 ~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~----lWigt~~~Gl~~~~~~~~  343 (781)
T 3v9f_A          290 FLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN----IWIGTWGGGINFISNAPP  343 (781)
T ss_dssp             --------CEEECBCSSTTSBSSSCEEEEEECSSCC----EEEEEBSSCEEEECSSCC
T ss_pred             eeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC----EEEEecCCeEEEeCCCCC
Confidence            321110            011123589999888886    667777778888886543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.05  E-value=0.00054  Score=67.38  Aligned_cols=244  Identities=10%  Similarity=-0.010  Sum_probs=123.0

Q ss_pred             CeEEEEEc-CCCCEEEEEcCC------cEEEEeCCCC-cEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            9 PVFFVSFN-QDNSGFALSTKD------GFKIFDSSTG-RLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         9 ~V~~l~fs-~d~~~la~g~~~------g~~v~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      .+...+|| |||++||-+.+.      .++++|++++ +.+...-........|.++++.++++.....  .....|.++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~--~~~~~v~~~  252 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDET--LRENKVWRH  252 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTT--CCEEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCC--CCCCEEEEE
Confidence            57789999 999998855432      2788899988 6321100011123467777778877754210  012478999


Q ss_pred             ECCCCcE--EEEEec--CCceEEEEEcCCe--EEEEE----CCeEEEEECCCCc-ee--eEEeCCCCCceEEEEeeCCCc
Q 019349           81 NTTTGTA--LRELNF--LTSILAVRLNKKR--LVIVL----REKTYIYDANTLA-IL--DTIDTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        81 d~~~~~~--~~~~~~--~~~v~~i~~~~~~--~~~~~----d~~i~i~d~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~  147 (342)
                      ++.+++.  ...+..  ......+.+++++  +++..    ...|+++|+.++. ..  ..+.. ..........++.++
T Consensus       253 ~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~-~~~~~~~s~~~~~g~  331 (751)
T 2xe4_A          253 VMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRP-REKGVRYDVQMHGTS  331 (751)
T ss_dssp             ETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSC-CCTTCCEEEEEETTT
T ss_pred             ECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeec-CCCCceEEEeeeeCC
Confidence            9987642  222222  2345677888875  44433    2378999998752 12  22221 111222333322223


Q ss_pred             cEEEEeCCC--CccEEEEEEccCCceeEE-EecccC--CeeEEEECCCCCEEEEEeCCCcE-EEEEEc-------CCCee
Q 019349          148 CFLAVPAST--TKGSVLVYNVMELHSHCE-IDAHQA--PLAAIVLSSNGMYIATASEQGTI-IRVFLV-------SEATK  214 (342)
Q Consensus       148 ~~l~~~~~~--~~g~i~iwd~~~~~~~~~-~~~h~~--~v~~i~~s~dg~~lat~s~dg~~-irlwd~-------~~~~~  214 (342)
                      .+++....+  ....|..+|+.++..... +-.|..  .+..+.+. .+.++++...+|.. +.++|+       ..++.
T Consensus       332 ~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~  410 (751)
T 2xe4_A          332 HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIWTMMADSQDGVFKAGTG  410 (751)
T ss_dssp             EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEEEEECCTTTSCCCTTTC
T ss_pred             EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEEEEecccccccccCCcc
Confidence            333333321  234677788765322222 333433  34555554 23455666666642 345564       33331


Q ss_pred             EEEeccCcCceeEEEEEE----ecCCCcccEEEEEeCC---CcEEEEecCCC
Q 019349          215 SYSFRRGTYPSTIFSLSF----GQSMQFQDILVATSSS---GSLHVFSPGFA  259 (342)
Q Consensus       215 ~~~~~~~~~~~~v~~l~f----s~d~~~~~~l~~~s~d---g~i~vwd~~~~  259 (342)
                      +..+... ....+..+.+    ++++.  .++++.+..   .+++.+|+.++
T Consensus       411 ~~~l~l~-~~~~~~~~~~~~~~~~~~~--~l~~~~ss~~~P~~~~~~d~~~~  459 (751)
T 2xe4_A          411 LREVVME-EPIFTVHLVESQMLEYEEP--TFRMEYSSLATPNTWFDVSPQDH  459 (751)
T ss_dssp             CEECCCC-CSSCEEEECGGGCCCTTCS--CEEEEEEETTEEEEEEEECTTTC
T ss_pred             ceEECCC-CceeEEEeccCcccCCCCC--EEEEEEeCCCCCCEEEEEECCCC
Confidence            3443211 1112333433    34554  155554443   34677776654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.03  E-value=0.0063  Score=53.87  Aligned_cols=236  Identities=6%  Similarity=-0.084  Sum_probs=135.6

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE
Q 019349            9 PVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA   87 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~   87 (342)
                      ...|.+..++ ..|..+....++..+++......... ......+.+....+.+.++..      ..+.|..++...+..
T Consensus        35 ~~~C~~~~~~-~~ll~~~~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~------~~~~I~r~~~~g~~~  107 (349)
T 3v64_C           35 RRSCKALGPE-PVLLFANRIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDV------TLDRILRANLNGSNV  107 (349)
T ss_dssp             SSCEEESSSC-CEEEEECBSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSC
T ss_pred             CCcccccccC-ceeEeecccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEec------cCCceEEEecCCCCc
Confidence            3456666663 45666666778778877654433222 234445566666666666654      367899999876553


Q ss_pred             EEEEecC-CceEEEEEcC--CeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc-cEE
Q 019349           88 LRELNFL-TSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK-GSV  161 (342)
Q Consensus        88 ~~~~~~~-~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-g~i  161 (342)
                      ...+... ....++++++  ..++++.  .+.|.+.++........+...  ......++.+|.+..|..+.. .. +.|
T Consensus       108 ~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~--l~~P~~iavdp~~g~ly~td~-~~~~~I  184 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQS--LEKPRAIALHPMEGTIYWTDW-GNTPRI  184 (349)
T ss_dssp             EEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTT--CSCEEEEEEETTTTEEEEEEC-SSSCEE
T ss_pred             eEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCC--CCCcceEEEecCcCeEEEecc-CCCCEE
Confidence            3333221 2456677763  4555555  468999998654322222221  122344455554445555543 34 789


Q ss_pred             EEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349          162 LVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI  241 (342)
Q Consensus       162 ~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~  241 (342)
                      ..+++........+...-...+.|+++|++..|..+......|..+|+.... ...+... .......|++ .++.   +
T Consensus       185 ~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~-~~~~~~~-~~~~P~giav-~~~~---l  258 (349)
T 3v64_C          185 EASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH-RKAVISQ-GLPHPFAITV-FEDS---L  258 (349)
T ss_dssp             EEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECS-SCSSEEEEEE-ETTE---E
T ss_pred             EEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc-eEEEEeC-CCCCceEEEE-ECCE---E
Confidence            9998764332222222334578999999777777776555556888876432 2222211 1234577888 3454   6


Q ss_pred             EEEEeCCCcEEEEecCCCC
Q 019349          242 LVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       242 l~~~s~dg~i~vwd~~~~~  260 (342)
                      +.+-...+.|..++-.+++
T Consensus       259 y~td~~~~~V~~~~~~~G~  277 (349)
T 3v64_C          259 YWTDWHTKSINSANKFTGK  277 (349)
T ss_dssp             EEEETTTTEEEEEETTTCC
T ss_pred             EEecCCCCeEEEEEccCCC
Confidence            6666677889888854443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.99  E-value=0.0066  Score=52.88  Aligned_cols=227  Identities=7%  Similarity=-0.055  Sum_probs=128.9

Q ss_pred             EEEEEcCCcEEEEeCCCCcEEEEE-eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC---CcEEE-EEecC-
Q 019349           21 GFALSTKDGFKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT---GTALR-ELNFL-   94 (342)
Q Consensus        21 ~la~g~~~g~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~---~~~~~-~~~~~-   94 (342)
                      +|+.+..+.++..|+++.+..... .......+.+....+.+.++..      ..+.|..+|+..   +.... .+... 
T Consensus         3 ~ll~~~~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~------~~~~I~~~~~~g~~~~~~~~~~~~~~~   76 (316)
T 1ijq_A            3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRDI   76 (316)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET------TTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECCCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEEC------CCCcEEEEECCCCCCCcccEEEEeCCC
Confidence            567777788999998876543322 2233444556555666666654      368899999875   12222 22211 


Q ss_pred             CceEEEEEc--CCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc
Q 019349           95 TSILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (342)
Q Consensus        95 ~~v~~i~~~--~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~  170 (342)
                      ....+++++  ...++++.  .+.|.++++........+....  .....++.+|.+..|..+.....+.|...++....
T Consensus        77 ~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~--~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~  154 (316)
T 1ijq_A           77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENG--SKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  154 (316)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTT--CCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCC--CCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC
Confidence            245677775  34566655  5689999986543322222211  12334455554444444442123788888875432


Q ss_pred             eeEEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC-cCceeEEEEEEecCCCcccEEEEEeCC
Q 019349          171 SHCEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSS  248 (342)
Q Consensus       171 ~~~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~~~l~~~s~d  248 (342)
                       ...+ ...-...+.|++++++..|..+......|..+|+.. .....+... ........|++. .+.   ++.+-...
T Consensus       155 -~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~---ly~~d~~~  228 (316)
T 1ijq_A          155 -IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDK---VFWTDIIN  228 (316)
T ss_dssp             -EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTE---EEEEETTT
T ss_pred             -eEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCE---EEEEECCC
Confidence             2222 223345789999998877777665544568899863 332333211 112235678885 344   66666777


Q ss_pred             CcEEEEecCCCCC
Q 019349          249 GSLHVFSPGFAIN  261 (342)
Q Consensus       249 g~i~vwd~~~~~~  261 (342)
                      +.|..++..+++.
T Consensus       229 ~~V~~~~~~~g~~  241 (316)
T 1ijq_A          229 EAIFSANRLTGSD  241 (316)
T ss_dssp             TEEEEEETTTCCC
T ss_pred             CeEEEEeCCCCcc
Confidence            8899998765543

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.95  E-value=0.01  Score=53.56  Aligned_cols=229  Identities=7%  Similarity=-0.058  Sum_probs=132.5

Q ss_pred             CEEEEEcCCcEEEEeCCCCcEEEEE-eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC----cEEEEEe-c
Q 019349           20 SGFALSTKDGFKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG----TALRELN-F   93 (342)
Q Consensus        20 ~~la~g~~~g~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~----~~~~~~~-~   93 (342)
                      .+|+.+....++..+++........ .......+++....+.+.++..      ..+.|..+++...    .....+. .
T Consensus        84 ~~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~------~~~~I~~~~~~g~~~~~~~~~~~~~~  157 (400)
T 3p5b_L           84 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRD  157 (400)
T ss_dssp             CEEEEEETTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEET------TTTEEEEEEC------CCCEEEECSS
T ss_pred             ceeEEeccceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEec------CCCeEEEEEcccCCCCCcceEEEeCC
Confidence            4666677778888888776433222 2344555666666666666654      3678888887652    1222222 2


Q ss_pred             CCceEEEEEcC--CeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC
Q 019349           94 LTSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL  169 (342)
Q Consensus        94 ~~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~  169 (342)
                      .....+++++.  ..++++.  .+.|.+.++........+.....  ...+++.+|.+..|..+.....+.|...++...
T Consensus       158 ~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~--~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~  235 (400)
T 3p5b_L          158 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  235 (400)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSC--CEEEEEEETTTTEEEEEECSSSCCEEEEETTSC
T ss_pred             CCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCC--CcceEEEecccCeEEEEeCCCCCEEEEEeCCCC
Confidence            23567777764  4566655  46899998875543333332212  233445555444554443213477888888654


Q ss_pred             ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC-cCceeEEEEEEecCCCcccEEEEEeCC
Q 019349          170 HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSS  248 (342)
Q Consensus       170 ~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~~~l~~~s~d  248 (342)
                      .....+...-...+.|++++++..|..+......|+.+|+... ....+... .......+|++. .+.   ++.+-...
T Consensus       236 ~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~l~~P~gl~v~-~~~---lywtd~~~  310 (400)
T 3p5b_L          236 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVF-EDK---VFWTDIIN  310 (400)
T ss_dssp             SCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC-CCEEEEECSSTTSSEEEEEEE-TTE---EEEEESSS
T ss_pred             ccEEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCC-ccEEEEeCCCCCCCCEEEEEe-CCE---EEEecCCC
Confidence            4333333333567899999988888877655555788898543 33333221 112235677774 334   66666777


Q ss_pred             CcEEEEecCCCCC
Q 019349          249 GSLHVFSPGFAIN  261 (342)
Q Consensus       249 g~i~vwd~~~~~~  261 (342)
                      +.|..+|..+++.
T Consensus       311 ~~V~~~~~~~G~~  323 (400)
T 3p5b_L          311 EAIFSANRLTGSD  323 (400)
T ss_dssp             CSEEEEESSSCCC
T ss_pred             CeEEEEEcCCCCc
Confidence            8899998655543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.94  E-value=0.012  Score=53.82  Aligned_cols=239  Identities=7%  Similarity=0.011  Sum_probs=128.1

Q ss_pred             CeEEEEEcC-CCCEEEEEcC-CcEEEEeCCCCcEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349            9 PVFFVSFNQ-DNSGFALSTK-DGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (342)
Q Consensus         9 ~V~~l~fs~-d~~~la~g~~-~g~~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~   85 (342)
                      ....|+|+| ++..|.++.. ..++.+|++.+++..... ......+.+..+.+.+.++..+..  .....+...+ ..+
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~--~~~~~v~~~~-~~g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVRTICWTHEADSMIITNDQNN--NDRPNNYILT-RES  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEEEEEECTTSSEEEEEECCSC--TTSEEEEEEE-GGG
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcceEEEeCCCCEEEEEeCCCC--cccceEEEEe-CCC
Confidence            456889998 4555655544 557889988776543322 233455677777775655543210  0011233333 333


Q ss_pred             cEE--EEEecCCceEEEEEcC-Ce-EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349           86 TAL--RELNFLTSILAVRLNK-KR-LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        86 ~~~--~~~~~~~~v~~i~~~~-~~-~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      ...  ..+.......++++++ +. ++++.  .++|+.++...+.......... ......++.++++.+|..+.. ..+
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~~lyv~d~-~~~  292 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGNYAYIVVV-NQH  292 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS-SSCCEEEEECTTSSEEEEEET-TTT
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCCEEEEEEC-CCC
Confidence            221  2222223456777887 44 44444  5799999998765422222211 122345566777775555543 578


Q ss_pred             EEEEEEccC--Cce--eEEEecc---------------cCCee-EEEEC--------CCCCEEEEEeCCCcEEEEEEcCC
Q 019349          160 SVLVYNVME--LHS--HCEIDAH---------------QAPLA-AIVLS--------SNGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       160 ~i~iwd~~~--~~~--~~~~~~h---------------~~~v~-~i~~s--------~dg~~lat~s~dg~~irlwd~~~  211 (342)
                      .|..++...  ++.  ...+.+.               -.... .+++.        ++|.+.++-...++ |+.++ .+
T Consensus       293 ~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~-I~~i~-~~  370 (430)
T 3tc9_A          293 YILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHC-IRILT-PQ  370 (430)
T ss_dssp             EEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTE-EEEEC-TT
T ss_pred             EEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcE-EEEEC-CC
Confidence            899988653  221  1222211               01122 45553        44655555444444 67888 46


Q ss_pred             CeeEEEecc------Cc-C--------ceeEEEEEEecC-CCcccEEEEEeCCCcEEEEecC
Q 019349          212 ATKSYSFRR------GT-Y--------PSTIFSLSFGQS-MQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       212 ~~~~~~~~~------~~-~--------~~~v~~l~fs~d-~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      |+.......      +. .        -.....|+++|+ +.   ++++-...+.|+.++++
T Consensus       371 G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~---lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          371 GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEEREC---FFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTE---EEEEEGGGTEEEEEEEC
T ss_pred             CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCE---EEEEECCCCeEEEEccC
Confidence            654333211      00 0        013688999994 65   66666667789988864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.93  E-value=0.012  Score=53.74  Aligned_cols=239  Identities=10%  Similarity=0.075  Sum_probs=129.8

Q ss_pred             CeEEEEEcCC--CCEEEEEcC-CcEEEEeCCCCcEEEEEe-eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            9 PVFFVSFNQD--NSGFALSTK-DGFKIFDSSTGRLCYERA-VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         9 ~V~~l~fs~d--~~~la~g~~-~g~~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      ....|+|+|+  +..|.++.. ..++.+|+.++++..... ......+.+..+++ +.++..+..  .....+...+...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~giavd~dG~-lyVad~~~~--~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCADVNFTLNGD-MVVVDDQSS--DTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEEEEEECTTCC-EEEEECCSC--TTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCccEEEECCCCC-EEEEcCCCC--cccceEEEEECCC
Confidence            3568999995  444555543 568889988776654322 23345566767777 444332100  0012233333322


Q ss_pred             CcE-EEEEecCCceEEEEEcC-Ce-EEEEE--CCeEEEEECCCCceeeEE-eCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349           85 GTA-LRELNFLTSILAVRLNK-KR-LVIVL--REKTYIYDANTLAILDTI-DTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (342)
Q Consensus        85 ~~~-~~~~~~~~~v~~i~~~~-~~-~~~~~--d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  158 (342)
                      +.. ...+..-.....+++++ +. ++++.  .+.|+.++..++.....+ ..... .....++.++++..|..+.. ..
T Consensus       217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~-~~~~~ia~dpdG~~LYvad~-~~  294 (433)
T 4hw6_A          217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTK-GSNFHIVWHPTGDWAYIIYN-GK  294 (433)
T ss_dssp             TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCC-SSCEEEEECTTSSEEEEEET-TT
T ss_pred             CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCC-CCcccEEEeCCCCEEEEEeC-CC
Confidence            211 01111123445677777 44 44444  468999998877653333 22222 12224666777765555544 47


Q ss_pred             cEEEEEEcc--CCce--eEEEecc---------------cCCeeEEEE---------CCCCCEEEEEeCCCcEEEEEEcC
Q 019349          159 GSVLVYNVM--ELHS--HCEIDAH---------------QAPLAAIVL---------SSNGMYIATASEQGTIIRVFLVS  210 (342)
Q Consensus       159 g~i~iwd~~--~~~~--~~~~~~h---------------~~~v~~i~~---------s~dg~~lat~s~dg~~irlwd~~  210 (342)
                      +.|+.++..  ++..  ...+.+.               -.....|++         .++|++.++-...++ |+.++. 
T Consensus       295 ~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~-I~~~~~-  372 (433)
T 4hw6_A          295 HCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHT-VRVLTP-  372 (433)
T ss_dssp             TEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTE-EEEECT-
T ss_pred             CEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCE-EEEECC-
Confidence            899998865  2221  1222221               123567999         777776666555554 688884 


Q ss_pred             CCeeEEEeccCc------C---------ceeEEEEEEe-cCCCcccEEEEEeCCCcEEEEecC
Q 019349          211 EATKSYSFRRGT------Y---------PSTIFSLSFG-QSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       211 ~~~~~~~~~~~~------~---------~~~v~~l~fs-~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +|......-.+.      .         -.....|+++ +++.   ++++-...+.|+.++++
T Consensus       373 ~G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~---lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          373 EGRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKC---FYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             TSEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTE---EEEEEGGGTEEEEEEEC
T ss_pred             CCCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCE---EEEEeCCCCEEEEEecC
Confidence            665432221110      0         1126789999 6676   66666777889988865

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=97.90  E-value=0.005  Score=53.64  Aligned_cols=174  Identities=11%  Similarity=0.086  Sum_probs=100.3

Q ss_pred             CCeEEEEECCCCcEEEEEec---------------------CCceEEEEEcC-C-eEEEEE-CCeEEEEECCCCceeeEE
Q 019349           74 PRRLCLFNTTTGTALRELNF---------------------LTSILAVRLNK-K-RLVIVL-REKTYIYDANTLAILDTI  129 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~---------------------~~~v~~i~~~~-~-~~~~~~-d~~i~i~d~~~~~~~~~~  129 (342)
                      ++.|..||..+++.. .+..                     ...+.++++.+ + .++++. .+.+..+|..+++. ..+
T Consensus        39 ~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d~~~~i~~~d~~~g~~-~~~  116 (322)
T 2fp8_A           39 DGRVIKYEGPNSGFV-DFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHA-TQL  116 (322)
T ss_dssp             TSEEEEECCTTTCEE-EEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEETTTEEEEECTTCEEC-EEE
T ss_pred             CCeEEEECCCCCceE-EEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEECCCCEEEEeCCCCEE-EEe
Confidence            678888988765433 2221                     12478888885 4 566665 45688888765432 222


Q ss_pred             eCCC---CCceEEEEeeCC-CccEEEEeCC---------------CCccEEEEEEccCCceeEEEecccCCeeEEEECCC
Q 019349          130 DTVP---NLKGLCAFSPSL-NACFLAVPAS---------------TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSN  190 (342)
Q Consensus       130 ~~~~---~~~~~~~~~~~~-~~~~l~~~~~---------------~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~d  190 (342)
                      ....   .......+..++ ++.+.++...               ..+|.|..||..+++...... .....+.|+++|+
T Consensus       117 ~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~-~~~~p~gia~~~d  195 (322)
T 2fp8_A          117 ATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLK-ELHVPGGAEVSAD  195 (322)
T ss_dssp             ESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEE-EESCCCEEEECTT
T ss_pred             cccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEecc-CCccCcceEECCC
Confidence            2111   111234556667 6666554321               124789999987765432222 2234578999999


Q ss_pred             CCEEEEE-eCCCcEEEEEEcCCCe--eEEEeccCcCceeEEEEEEecCCCcccEEEEEeC----------CCcEEEEecC
Q 019349          191 GMYIATA-SEQGTIIRVFLVSEAT--KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS----------SGSLHVFSPG  257 (342)
Q Consensus       191 g~~lat~-s~dg~~irlwd~~~~~--~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~----------dg~i~vwd~~  257 (342)
                      |+.|..+ +..++ |..|++....  ....+..  .+. ...|++.++|.   ++++...          .+.|..+|.+
T Consensus       196 g~~lyv~d~~~~~-I~~~~~~~~~~~~~~~~~~--~~g-P~gi~~d~~G~---l~va~~~~~~~~~~~~~~~~v~~~d~~  268 (322)
T 2fp8_A          196 SSFVLVAEFLSHQ-IVKYWLEGPKKGTAEVLVK--IPN-PGNIKRNADGH---FWVSSSEELDGNMHGRVDPKGIKFDEF  268 (322)
T ss_dssp             SSEEEEEEGGGTE-EEEEESSSTTTTCEEEEEE--CSS-EEEEEECTTSC---EEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred             CCEEEEEeCCCCe-EEEEECCCCcCCccceEEe--CCC-CCCeEECCCCC---EEEEecCcccccccCCCccEEEEECCC
Confidence            9876655 44455 5788886421  1112211  122 57789999998   6665544          4567777643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.89  E-value=0.0083  Score=50.50  Aligned_cols=158  Identities=14%  Similarity=0.088  Sum_probs=99.3

Q ss_pred             CceEEEEEcC--CeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc
Q 019349           95 TSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (342)
Q Consensus        95 ~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~  170 (342)
                      ..+.++++++  +.++++.  ++.|...|.. ++.++.+..... ...-.++..+++.++++..  .++.+.++++....
T Consensus        27 ~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E--~~~~l~~~~v~~~~  102 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDE--RDYAIYVISLTPNS  102 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEET--TTTEEEEEEECTTC
T ss_pred             cCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEEC--CCCcEEEEEcCCCC
Confidence            4688899986  4566666  4588888887 888888754321 2344555667776655544  46889999876543


Q ss_pred             e---eEEEe------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC---CCeeEEEec-----cCcCceeEEEEEEe
Q 019349          171 S---HCEID------AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS---EATKSYSFR-----RGTYPSTIFSLSFG  233 (342)
Q Consensus       171 ~---~~~~~------~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~---~~~~~~~~~-----~~~~~~~v~~l~fs  233 (342)
                      .   +....      .+......|+++|+++.|.++.+.+.. .+|.+.   ....+..+.     .......+.+++++
T Consensus       103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~-~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~d  181 (255)
T 3qqz_A          103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPI-EVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFN  181 (255)
T ss_dssp             CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSE-EEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEE
T ss_pred             eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCc-eEEEEcccccCCceeeecchhhccccccCCceeEEEc
Confidence            2   22221      123456899999999888888876652 455553   111112111     11112246889999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      |...  ++++.......+.++|.+..
T Consensus       182 p~tg--~lliLS~~s~~L~~~d~~g~  205 (255)
T 3qqz_A          182 QQKN--TLLVLSHESRALQEVTLVGE  205 (255)
T ss_dssp             TTTT--EEEEEETTTTEEEEECTTCC
T ss_pred             CCCC--eEEEEECCCCeEEEEcCCCC
Confidence            9765  36777777778999987644

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.88  E-value=0.013  Score=52.57  Aligned_cols=177  Identities=11%  Similarity=-0.070  Sum_probs=103.5

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcC--CeEEEEE--CCeEEEEECCCCceeeEEeCCC-CCceEEEEeeCCCcc
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTIDTVP-NLKGLCAFSPSLNAC  148 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  148 (342)
                      .+.|+..++..+.....+.....+.++++++  ..++++.  .+.|+.+++........+.... .+.+ .++.+.  +.
T Consensus        95 ~~~I~~i~~~~~~~~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g-lavd~~--~g  171 (386)
T 3v65_B           95 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG-LAVDWV--HD  171 (386)
T ss_dssp             BSCEEEECTTSCCCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCC-EEEETT--TT
T ss_pred             CccceeeccCCCcEEEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccE-EEEEeC--CC
Confidence            4678888887766554444455688899874  3455554  5689999987654333333222 2222 344433  23


Q ss_pred             EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC-cEEEEEEcCCCeeEEEeccCcCceeE
Q 019349          149 FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG-TIIRVFLVSEATKSYSFRRGTYPSTI  227 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg-~~irlwd~~~~~~~~~~~~~~~~~~v  227 (342)
                      .|..+.. ..+.|.+.++........+.......+.|+++|++..|..+.... ..|..+++. |.....+... .....
T Consensus       172 ~lY~~d~-~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~-~~~~P  248 (386)
T 3v65_B          172 KLYWTDS-GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMD-GSGRRIIADT-HLFWP  248 (386)
T ss_dssp             EEEEEET-TTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCSCEEEECS-SCSCE
T ss_pred             eEEEEcC-CCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCC-CCCcEEEEEC-CCCCe
Confidence            3433333 467899888865443333333345678999998766655554332 235677765 3332333211 12236


Q ss_pred             EEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          228 FSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       228 ~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      ..|+|+|++.  .+..+-+..+.|..+|++.
T Consensus       249 nGlavd~~~~--~lY~aD~~~~~I~~~d~dG  277 (386)
T 3v65_B          249 NGLTIDYAGR--RMYWVDAKHHVIERANLDG  277 (386)
T ss_dssp             EEEEEEGGGT--EEEEEETTTTEEEEECTTS
T ss_pred             eeEEEeCCCC--EEEEEECCCCEEEEEeCCC
Confidence            7899998765  1445556677899999864

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.85  E-value=0.0095  Score=52.33  Aligned_cols=184  Identities=13%  Similarity=0.236  Sum_probs=108.4

Q ss_pred             EEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCC----CCe--EEEEcCCCCCCCC--CCeEEEEEC--CCCcEEEEEec
Q 019349           24 LSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYS----SSL--LAIVGAGEQPSLS--PRRLCLFNT--TTGTALRELNF   93 (342)
Q Consensus        24 ~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~----~~~--~~~~~~g~~~~~~--d~~i~iwd~--~~~~~~~~~~~   93 (342)
                      +.-..|+.+||+ +|+++.....+.+.-+.+.+.    +..  +++++..     .  +++|.++++  .+++ +..+..
T Consensus        46 t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R-----~~~~n~l~vf~iDp~~~~-l~~i~~  118 (355)
T 3amr_A           46 TNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNR-----SEGKNTIEIYAIDGKNGT-LQSMTD  118 (355)
T ss_dssp             EETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEEC-----STTCCEEEEEEECTTTCC-EEECSC
T ss_pred             EcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCC-----CCCCCeEEEEEECCCCCc-eeeccc
Confidence            334457999999 777776665555555555442    111  4555542     4  689999966  4443 544421


Q ss_pred             ---C-----CceEEEEE--cCC-e--EEEEE--CCeEEEEECC-------CCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           94 ---L-----TSILAVRL--NKK-R--LVIVL--REKTYIYDAN-------TLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        94 ---~-----~~v~~i~~--~~~-~--~~~~~--d~~i~i~d~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                         +     ..+..+++  ++. .  .+++.  ++.+..|++.       +.++++++.....+.   .+..++....|.
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~E---gcvvDd~~g~Ly  195 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTE---GMAADDEYGRLY  195 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEE---EEEEETTTTEEE
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcc---eEEEcCCCCeEE
Confidence               1     45677777  542 2  23344  6788888882       236678887755432   333344444666


Q ss_pred             EeCCCCccEEEEEEcc-----CCceeEEEe-cc-cCCeeEEEE--CCCCC-EEEEEeCCCcEEEEEEcC-CCeeEEEec
Q 019349          152 VPASTTKGSVLVYNVM-----ELHSHCEID-AH-QAPLAAIVL--SSNGM-YIATASEQGTIIRVFLVS-EATKSYSFR  219 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~-----~~~~~~~~~-~h-~~~v~~i~~--s~dg~-~lat~s~dg~~irlwd~~-~~~~~~~~~  219 (342)
                      ++-  .+..|..+|.+     +++.+..+. +| ...+..|++  .++|+ +|+++|+....+.+||.. +.+.+..|+
T Consensus       196 v~e--Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~  272 (355)
T 3amr_A          196 IAE--EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR  272 (355)
T ss_dssp             EEE--TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred             Eec--ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence            655  34447667754     344454442 22 246888888  56666 777777443335799996 667777775

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.81  E-value=0.021  Score=52.76  Aligned_cols=246  Identities=6%  Similarity=0.010  Sum_probs=131.4

Q ss_pred             CeEEEEEcC-CCCEEEEEcCC--cEEEEeCCCCcEEEEEeeC-----CEEEEEE-------cCCCCeEEEEcCCCCCCCC
Q 019349            9 PVFFVSFNQ-DNSGFALSTKD--GFKIFDSSTGRLCYERAVG-----AFSIVEM-------LYSSSLLAIVGAGEQPSLS   73 (342)
Q Consensus         9 ~V~~l~fs~-d~~~la~g~~~--g~~v~d~~~~~~~~~~~~~-----~~~~~~~-------~~~~~~~~~~~~g~~~~~~   73 (342)
                      ....|+|+| ++..|.++...  .+++.|++.+.+..-...+     ....+.+       ..+.+.+.+..........
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            467999999 45556555443  4688888887665433222     2455666       6666656555442100000


Q ss_pred             CCeEEEEECCC-CcEE-----EEEecCCceEEEEEcC--CeEEEEE--CCeEEEEECC-------CCce-----------
Q 019349           74 PRRLCLFNTTT-GTAL-----RELNFLTSILAVRLNK--KRLVIVL--REKTYIYDAN-------TLAI-----------  125 (342)
Q Consensus        74 d~~i~iwd~~~-~~~~-----~~~~~~~~v~~i~~~~--~~~~~~~--d~~i~i~d~~-------~~~~-----------  125 (342)
                      ...|.+.+... +...     ..+..-.....+++++  ..++++.  .+.|+.+|+.       ++..           
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence            12366665333 1211     1111112334667777  3455555  5689999987       5543           


Q ss_pred             eeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc--CCce--eEEEecc------c---------CCee-EE
Q 019349          126 LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM--ELHS--HCEIDAH------Q---------APLA-AI  185 (342)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~--~~~~--~~~~~~h------~---------~~v~-~i  185 (342)
                      ...+-..........++.+|++..|..+.. ....|+.+|..  .+..  ..++-+.      .         .... .+
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~-~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVI-NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEET-TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeC-CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence            223211111122345667777775555543 46889996653  3221  1222221      0         1233 45


Q ss_pred             EEC-------CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC-------------cCc---------eeEEEEEEecC-
Q 019349          186 VLS-------SNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-------------TYP---------STIFSLSFGQS-  235 (342)
Q Consensus       186 ~~s-------~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~-------------~~~---------~~v~~l~fs~d-  235 (342)
                      +..       ++|.+.++=+... .||.++ .+|. +.++...             ...         .....|+++++ 
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~-rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~  455 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNF-CVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVK  455 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGT-EEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTT
T ss_pred             EEccccccccCCCeEEEEECCCC-EEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCC
Confidence            554       4566555544444 468888 4664 3444211             001         12678999997 


Q ss_pred             CCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          236 MQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       236 ~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +.   ++++=+..+.|+.++++....
T Consensus       456 g~---lyVaD~~N~rIrki~~~~~~~  478 (496)
T 3kya_A          456 EM---FYVHDQVGHTIRTISMEQEEN  478 (496)
T ss_dssp             TE---EEEEETTTTEEEEEEECCCC-
T ss_pred             CE---EEEEeCCCCEEEEEECCCCcc
Confidence            76   666667778899999876543

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=97.80  E-value=0.012  Score=49.62  Aligned_cols=197  Identities=11%  Similarity=0.055  Sum_probs=120.2

Q ss_pred             CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC--CceEEEEEcCCeEE-EEE--CCeEEEEECC
Q 019349           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL--TSILAVRLNKKRLV-IVL--REKTYIYDAN  121 (342)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~--~~v~~i~~~~~~~~-~~~--d~~i~i~d~~  121 (342)
                      ..+.-+.+.++.+.++.+..      .++.|...|.. ++.+..+.+.  ...-+|++.++..+ ++.  ++.+.++++.
T Consensus        27 ~~lSGla~~~~~~~L~aV~d------~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           27 NNISSLTWSAQSNTLFSTIN------KPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             SCEEEEEEETTTTEEEEEEE------TTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             cCcceeEEeCCCCEEEEEEC------CCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            34566677777777777776      37889999987 8888888765  37788888776555 444  5689999886


Q ss_pred             CCc---eeeEEeCC----CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEc-cCCceeEEEe-------cccCCeeEEE
Q 019349          122 TLA---ILDTIDTV----PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNV-MELHSHCEID-------AHQAPLAAIV  186 (342)
Q Consensus       122 ~~~---~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~-~~~~~~~~~~-------~h~~~v~~i~  186 (342)
                      ...   .+......    ....+.-+++.++.+..|.++.-.....|..|+- .....+..+.       .+...+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            543   23344321    2234567778877664444433111224555551 1111222221       1334678999


Q ss_pred             ECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc--CcC-----ceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          187 LSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR--GTY-----PSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       187 ~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~--~~~-----~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      ++|....|..-|.....+-.+|.. |+.+..+.-  +.+     ...-..|+|.++|+    |...|+-+.+++|.
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~----lyIvsE~n~~y~f~  250 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN----IYIVSEPNRFYRFT  250 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC----EEEEETTTEEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC----EEEEcCCceEEEEE
Confidence            999666655556555556688865 555544432  211     11367899999998    44558888777775

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=97.77  E-value=0.008  Score=51.96  Aligned_cols=188  Identities=9%  Similarity=0.074  Sum_probs=106.0

Q ss_pred             EEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe-EEEEE--CC--eEEEEECCCCce
Q 019349           51 IVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR-LVIVL--RE--KTYIYDANTLAI  125 (342)
Q Consensus        51 ~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~-~~~~~--d~--~i~i~d~~~~~~  125 (342)
                      -+.+..+.+ +.++..      ..+.|..||... +....+.....+..+++.++. ++++.  .+  .|..++..+++.
T Consensus        36 gia~~~~g~-lyv~d~------~~~~I~~~d~~g-~~~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~  107 (306)
T 2p4o_A           36 NLASAPDGT-IFVTNH------EVGEIVSITPDG-NQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTV  107 (306)
T ss_dssp             EEEECTTSC-EEEEET------TTTEEEEECTTC-CEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCE
T ss_pred             eEEECCCCC-EEEEeC------CCCeEEEECCCC-ceEEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeE
Confidence            345555544 333432      367899998765 445555666778899998764 44444  22  477778777765


Q ss_pred             eeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce-eEEEe---------cccCCeeEEEECCCCCEEE
Q 019349          126 LDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-HCEID---------AHQAPLAAIVLSSNGMYIA  195 (342)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~-~~~~~---------~h~~~v~~i~~s~dg~~la  195 (342)
                      ......... ...-..+..+++..+++..  .+|.|..+|..+++. +....         ..-...+.|  ++|+++|.
T Consensus       108 ~~~~~~~~~-~~~~g~~~~~~~~~~v~d~--~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ly  182 (306)
T 2p4o_A          108 ETLLTLPDA-IFLNGITPLSDTQYLTADS--YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLY  182 (306)
T ss_dssp             EEEEECTTC-SCEEEEEESSSSEEEEEET--TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEE
T ss_pred             EEEEeCCCc-cccCcccccCCCcEEEEEC--CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEE
Confidence            433332211 1112222233343444332  468899999875431 21110         111234555  78888776


Q ss_pred             EEeCCCcEEEEEEcCC-Cee--EEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          196 TASEQGTIIRVFLVSE-ATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       196 t~s~dg~~irlwd~~~-~~~--~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      .+......|..+|+.. ++.  ...+...   .....|+++++|.   ++++....+.|.+|+.+
T Consensus       183 v~d~~~~~I~~~~~~~~g~~~~~~~~~~~---~~P~gi~vd~dG~---l~va~~~~~~V~~~~~~  241 (306)
T 2p4o_A          183 VSNTEKMLLLRIPVDSTDKPGEPEIFVEQ---TNIDDFAFDVEGN---LYGATHIYNSVVRIAPD  241 (306)
T ss_dssp             EEETTTTEEEEEEBCTTSCBCCCEEEEES---CCCSSEEEBTTCC---EEEECBTTCCEEEECTT
T ss_pred             EEeCCCCEEEEEEeCCCCCCCccEEEecc---CCCCCeEECCCCC---EEEEeCCCCeEEEECCC
Confidence            6655444467899864 331  1111111   1245689999998   77777778899999854

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.75  E-value=0.0036  Score=60.47  Aligned_cols=236  Identities=8%  Similarity=0.034  Sum_probs=119.3

Q ss_pred             EEEEcC-CCCEEEEEcCC------------cEEEEeCCCCcEE--EEEee---CCEEEEEEcCCCCeEEEEcCCCCCCCC
Q 019349           12 FVSFNQ-DNSGFALSTKD------------GFKIFDSSTGRLC--YERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (342)
Q Consensus        12 ~l~fs~-d~~~la~g~~~------------g~~v~d~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (342)
                      ++++.+ +++.++.|+.+            .+.+||+.+++..  .....   .....+.+..++. +.++||.     .
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~-----~  263 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGN-----D  263 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSS-----S
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCC-----C
Confidence            667777 88887777532            2578998877432  11111   1111233344444 4444441     3


Q ss_pred             CCeEEEEECCCCcEEEEEecCC--ceEEEEEc-CCeEEEEEC--------CeEEEEECCCCceeeEEeC----CC-CCce
Q 019349           74 PRRLCLFNTTTGTALRELNFLT--SILAVRLN-KKRLVIVLR--------EKTYIYDANTLAILDTIDT----VP-NLKG  137 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~-~~~~~~~~d--------~~i~i~d~~~~~~~~~~~~----~~-~~~~  137 (342)
                      +..+.+||..+++....-..+.  .-.++... ...+++...        +.+.+||..+.+-. .+..    +. ....
T Consensus       264 ~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~-~~~~~~~~p~~~~~~  342 (656)
T 1k3i_A          264 AKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT-SLPNAKVNPMLTADK  342 (656)
T ss_dssp             TTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE-EETTSCSGGGCCCCT
T ss_pred             CCceEEecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcce-eCCCccccccccccc
Confidence            5689999998876543322221  11233333 445555542        46899999776422 1110    00 0000


Q ss_pred             EEEEeeCCCccEEEEeCCC-------CccEEEEEEccCCceeEEEecccC---------CeeEEEEC-CCCCEEEEEeCC
Q 019349          138 LCAFSPSLNACFLAVPAST-------TKGSVLVYNVMELHSHCEIDAHQA---------PLAAIVLS-SNGMYIATASEQ  200 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~-------~~g~i~iwd~~~~~~~~~~~~h~~---------~v~~i~~s-~dg~~lat~s~d  200 (342)
                      . + ....++...++++.+       ....+..||..+..-......+..         .-.++.|. .+++.++.|+.+
T Consensus       343 ~-~-~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~  420 (656)
T 1k3i_A          343 Q-G-LYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSP  420 (656)
T ss_dssp             T-G-GGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBS
T ss_pred             c-c-eeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCC
Confidence            0 0 001122233333310       134678899877653332222211         22444454 478888888754


Q ss_pred             C-------c---EEEEEEcCCCeeEEEe-ccCcCceeEEEEEEecCCCcccEEEEEeCC-----------CcEEEEecCC
Q 019349          201 G-------T---IIRVFLVSEATKSYSF-RRGTYPSTIFSLSFGQSMQFQDILVATSSS-----------GSLHVFSPGF  258 (342)
Q Consensus       201 g-------~---~irlwd~~~~~~~~~~-~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d-----------g~i~vwd~~~  258 (342)
                      +       .   .+.+||..+.+-.... .....+..-.+++..|+++   +++.|+.+           .++.+||.++
T Consensus       421 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~---i~v~GG~~~~~~~~~~~~~~~v~~ydp~t  497 (656)
T 1k3i_A          421 DYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGS---TFITGGQRRGIPFEDSTPVFTPEIYVPEQ  497 (656)
T ss_dssp             SSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSC---EEEECCBSBCCTTCCCSBCCCCEEEEGGG
T ss_pred             CCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCC---EEEECCcccCcCcCCCCcccceEEEcCCC
Confidence            2       1   3568888766543221 0111111124456678998   88888754           4688888765


Q ss_pred             C
Q 019349          259 A  259 (342)
Q Consensus       259 ~  259 (342)
                      .
T Consensus       498 ~  498 (656)
T 1k3i_A          498 D  498 (656)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.68  E-value=0.05  Score=53.55  Aligned_cols=228  Identities=7%  Similarity=-0.048  Sum_probs=127.9

Q ss_pred             CEEEEEcCCcEEEEeCCCCcEEE-EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC----cEEEEEe-c
Q 019349           20 SGFALSTKDGFKIFDSSTGRLCY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG----TALRELN-F   93 (342)
Q Consensus        20 ~~la~g~~~g~~v~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~----~~~~~~~-~   93 (342)
                      .+|+.+....++..++....... .........+.+....+.+.++..      ..+.|..+++...    .....+. .
T Consensus       396 p~Ll~an~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~------~~~~I~~~~l~g~~~~~~~~~vi~~~  469 (791)
T 3m0c_C          396 AYLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRD  469 (791)
T ss_dssp             CEEEEECBSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEET------TTTEEEEEEC--------CEEEECSS
T ss_pred             cccccccccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeec------cceeEEEEeccCCCCCcceeEEEecC
Confidence            35666666778888877654322 122344455566655566666654      3678888887642    1122222 1


Q ss_pred             CCceEEEEEc--CCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC
Q 019349           94 LTSILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL  169 (342)
Q Consensus        94 ~~~v~~i~~~--~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~  169 (342)
                      -....+|+++  ...++++.  .++|.+.++........+.....  ...+++.+|....|..+.....+.|...++...
T Consensus       470 l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~--~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~  547 (791)
T 3m0c_C          470 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  547 (791)
T ss_dssp             CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCC--CcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence            2345566665  44566665  56899999875433222222222  234455555444555444213378999998754


Q ss_pred             ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC-cCceeEEEEEEecCCCcccEEEEEeCC
Q 019349          170 HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSS  248 (342)
Q Consensus       170 ~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~~~l~~~s~d  248 (342)
                      .....+...-...+.|++++.+..|..+......|+..++.. .....+... .......+|++..+ .   ++.+-...
T Consensus       548 ~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG-~~~~~v~~~~~~l~~P~glav~~~-~---lYwtD~~~  622 (791)
T 3m0c_C          548 DIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVFED-K---VFWTDIIN  622 (791)
T ss_dssp             CEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEETT-E---EEEEETTT
T ss_pred             ceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCC-CceEEEecCCCccCCCCEEEEeCC-E---EEEEECCC
Confidence            443334433456889999987777777765555578888854 333333221 11223556777433 4   55666667


Q ss_pred             CcEEEEecCCCC
Q 019349          249 GSLHVFSPGFAI  260 (342)
Q Consensus       249 g~i~vwd~~~~~  260 (342)
                      +.|...+..+++
T Consensus       623 ~~I~~~dk~tG~  634 (791)
T 3m0c_C          623 EAIFSANRLTGS  634 (791)
T ss_dssp             TEEEEEETTTCC
T ss_pred             CEEEEEeCCCCc
Confidence            888888865554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.67  E-value=0.024  Score=49.31  Aligned_cols=176  Identities=11%  Similarity=0.015  Sum_probs=102.9

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcC--CeEEEEE--CCeEEEEECCC---CceeeE-EeCC-CCCceEEEEeeC
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANT---LAILDT-IDTV-PNLKGLCAFSPS  144 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~---~~~~~~-~~~~-~~~~~~~~~~~~  144 (342)
                      .+.|+..|+.+.+....+.....+.++.+++  +.++++.  .+.|+.+++..   +..... +... ..+.+ .++.+.
T Consensus         9 ~~~I~~i~~~~~~~~~~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g-lavd~~   87 (316)
T 1ijq_A            9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG-LAVDWI   87 (316)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE-EEEETT
T ss_pred             CCeEEEEECCCcceEehhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE-EEEeec
Confidence            4679999998877655555455778899975  3555555  56999999875   122222 2221 22322 234332


Q ss_pred             CCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC--CcEEEEEEcCCCeeEEEeccCc
Q 019349          145 LNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ--GTIIRVFLVSEATKSYSFRRGT  222 (342)
Q Consensus       145 ~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d--g~~irlwd~~~~~~~~~~~~~~  222 (342)
                        +..|..+.. ..+.|.++|+........+.......+.|+++|++..|..+...  ++ |...++. |+....+... 
T Consensus        88 --~~~ly~~d~-~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~-I~~~~~d-G~~~~~~~~~-  161 (316)
T 1ijq_A           88 --HSNIYWTDS-VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-  161 (316)
T ss_dssp             --TTEEEEEET-TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCCEEEEECS-
T ss_pred             --CCeEEEEEC-CCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCe-EEEEcCC-CCCeEEEEEC-
Confidence              223433332 46889999987544333333334567899999966655554433  44 4567764 4443333221 


Q ss_pred             CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          223 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       223 ~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      .-.....|+++|++.  .+..+-+..+.|..+|++.
T Consensus       162 ~~~~P~gla~d~~~~--~lY~~D~~~~~I~~~d~dg  195 (316)
T 1ijq_A          162 NIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNG  195 (316)
T ss_dssp             SCSCEEEEEEETTTT--EEEEEETTTTEEEEEETTS
T ss_pred             CCCCceEEEEeccCC--EEEEEECCCCeEEEEecCC
Confidence            123467899998766  1444555677899999874

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.60  E-value=0.0081  Score=58.01  Aligned_cols=230  Identities=9%  Similarity=-0.017  Sum_probs=116.0

Q ss_pred             EEEEcCCCCEEEEEcCC--cEEEEeCCCCcEEEEEe--eCCE-EEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349           12 FVSFNQDNSGFALSTKD--GFKIFDSSTGRLCYERA--VGAF-SIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus        12 ~l~fs~d~~~la~g~~~--g~~v~d~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      ++++..+++.+++|+.+  .+.+||+.+.+......  .... ..+....++.. .++||..+.....+.+.+||..+++
T Consensus       247 ~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~i-yv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          247 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRV-FTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCE-EEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             cccCCCCCCEEEeCCCCCCceEEecCcCCceeECCCCCccccccceEEecCCeE-EEEeCcccCCcccccceEeCCCCCc
Confidence            46788899998888744  37999988764332211  1111 12223334444 4444412211124679999998876


Q ss_pred             EEEEE-----ecCCc-eEEEEEcCCeEEEEE-----------CCeEEEEECCCCceeeEEeCCCC-------CceEEEEe
Q 019349           87 ALREL-----NFLTS-ILAVRLNKKRLVIVL-----------REKTYIYDANTLAILDTIDTVPN-------LKGLCAFS  142 (342)
Q Consensus        87 ~~~~~-----~~~~~-v~~i~~~~~~~~~~~-----------d~~i~i~d~~~~~~~~~~~~~~~-------~~~~~~~~  142 (342)
                      ....-     ..... -..+....+.+++..           ...+..||..+.+-.........       +....++.
T Consensus       326 W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~  405 (656)
T 1k3i_A          326 WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  405 (656)
T ss_dssp             EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             ceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence            54320     00000 000000112222222           34678899877653332221111       11112222


Q ss_pred             -eCCCccEEEEeCCCC------cc---EEEEEEccCCceeEEE--ecccCC-eeEEEECCCCCEEEEEeCC---------
Q 019349          143 -PSLNACFLAVPASTT------KG---SVLVYNVMELHSHCEI--DAHQAP-LAAIVLSSNGMYIATASEQ---------  200 (342)
Q Consensus       143 -~~~~~~~l~~~~~~~------~g---~i~iwd~~~~~~~~~~--~~h~~~-v~~i~~s~dg~~lat~s~d---------  200 (342)
                       +..++.+++++|...      ..   .|.+||..+.+-....  ..+... -.++++.|+|+.++.|+.+         
T Consensus       406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~  485 (656)
T 1k3i_A          406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST  485 (656)
T ss_dssp             EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred             ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence             123566777776310      01   6888888766533222  112222 2445677899999999864         


Q ss_pred             --CcEEEEEEcCCCeeEEEeccCcC-ceeEEEEEEecCCCcccEEEEEeC
Q 019349          201 --GTIIRVFLVSEATKSYSFRRGTY-PSTIFSLSFGQSMQFQDILVATSS  247 (342)
Q Consensus       201 --g~~irlwd~~~~~~~~~~~~~~~-~~~v~~l~fs~d~~~~~~l~~~s~  247 (342)
                        .+ +.+||..+.+-. .+..... .....+..+.||++   +++.|+.
T Consensus       486 ~~~~-v~~ydp~t~~W~-~~~~~~~~R~~hs~a~ll~dg~---v~v~GG~  530 (656)
T 1k3i_A          486 PVFT-PEIYVPEQDTFY-KQNPNSIVRVYHSISLLLPDGR---VFNGGGG  530 (656)
T ss_dssp             BCCC-CEEEEGGGTEEE-ECCCCSSCCCTTEEEEECTTSC---EEEEECC
T ss_pred             cccc-eEEEcCCCCcee-ecCCCCCccccccHhhcCCCcE---EEecCCC
Confidence              23 469999776532 1211111 11122345678999   8988885

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.59  E-value=0.034  Score=49.07  Aligned_cols=176  Identities=11%  Similarity=-0.051  Sum_probs=102.9

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcC--CeEEEEE--CCeEEEEECCCCceeeEEeCC-CCCceEEEEeeCCCcc
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLNAC  148 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  148 (342)
                      .+.|+..++........+.....+.++++++  +.++.+.  .+.|+.+++........+... ..+.+ .++.  +.+.
T Consensus        52 ~~~I~~i~~~g~~~~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~g-lavd--~~~g  128 (349)
T 3v64_C           52 RIDIRQVLPHRSEYTLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGG-LAVD--WVHD  128 (349)
T ss_dssp             BSCEEEECTTSCCEEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE-EEEE--TTTT
T ss_pred             ccceEEEeCCCCeeEEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccE-EEEe--cCCC
Confidence            4568888887665544444445678888874  3455554  568999998765433333222 12222 2344  3233


Q ss_pred             EEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe-CC-CcEEEEEEcCCCeeEEEeccCcCcee
Q 019349          149 FLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS-EQ-GTIIRVFLVSEATKSYSFRRGTYPST  226 (342)
Q Consensus       149 ~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s-~d-g~~irlwd~~~~~~~~~~~~~~~~~~  226 (342)
                      .|..+.. ..+.|.+.++........+...-...+.|+++|.+..|.... .. ++ |..+++. |.....+... ....
T Consensus       129 ~ly~~d~-~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~-I~r~~~d-G~~~~~~~~~-~~~~  204 (349)
T 3v64_C          129 KLYWTDS-GTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPR-IEASSMD-GSGRRIIADT-HLFW  204 (349)
T ss_dssp             EEEEEET-TTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCSCEESCCS-SCSC
T ss_pred             eEEEEcC-CCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCE-EEEEeCC-CCCcEEEEEC-CCCC
Confidence            4433333 467899999875543333333445678999999665555444 33 44 5677765 4333333211 1233


Q ss_pred             EEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          227 IFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       227 v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      ...|+|+|++.  .+..+-+..+.|..++++.
T Consensus       205 PnGla~d~~~~--~lY~aD~~~~~I~~~~~dG  234 (349)
T 3v64_C          205 PNGLTIDYAGR--RMYWVDAKHHVIERANLDG  234 (349)
T ss_dssp             EEEEEEETTTT--EEEEEETTTTEEEEEETTS
T ss_pred             cceEEEeCCCC--EEEEEECCCCEEEEEeCCC
Confidence            68899998765  1444445677899999875

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.57  E-value=0.034  Score=48.53  Aligned_cols=222  Identities=13%  Similarity=0.144  Sum_probs=109.0

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCc---EEEE-Ee--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR---LCYE-RA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~---~~~~-~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      ....+.+|.|.+++..+++|....+ +...+.++   .... ..  ...+..+.+  +.+.+.+++.       ++.|..
T Consensus        34 ~~~~~~~v~~~~~~~~~~~G~~g~i-~~s~DgG~tW~~~~~~~~~~~~~~~~i~~--~~~~~~~~g~-------~g~i~~  103 (327)
T 2xbg_A           34 TTATILDMSFIDRHHGWLVGVNATL-METRDGGQTWEPRTLVLDHSDYRFNSVSF--QGNEGWIVGE-------PPIMLH  103 (327)
T ss_dssp             CSSCEEEEEESSSSCEEEEETTTEE-EEESSTTSSCEECCCCCSCCCCEEEEEEE--ETTEEEEEEE-------TTEEEE
T ss_pred             CCCcEEEEEECCCCcEEEEcCCCeE-EEeCCCCCCCeECCCCCCCCCccEEEEEe--cCCeEEEEEC-------CCeEEE
Confidence            3457999999988888887764433 33334332   1111 00  112333333  3344444432       344333


Q ss_pred             EECCCCcEEEEEe----cCCceEEEEEc-CCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           80 FNTTTGTALRELN----FLTSILAVRLN-KKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        80 wd~~~~~~~~~~~----~~~~v~~i~~~-~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      - ...|+.=....    .+..+..+.+. +..++++. ++.|+. ....++.-..+... ....+..+...+++.+++++
T Consensus       104 S-~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~-~~~~~~~~~~~~~~~~~~~g  180 (327)
T 2xbg_A          104 T-TDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQE-AIGVMRNLNRSPSGEYVAVS  180 (327)
T ss_dssp             E-SSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECS-CCCCEEEEEECTTSCEEEEE
T ss_pred             E-CCCCCCceECccccCCCCCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecC-CCcceEEEEEcCCCcEEEEE
Confidence            2 12233212221    23456666654 44455555 343322 12223332233222 22356667777777777665


Q ss_pred             CCCCccEEEE-EEc--cCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC--cCceeEE
Q 019349          154 ASTTKGSVLV-YNV--MELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG--TYPSTIF  228 (342)
Q Consensus       154 ~~~~~g~i~i-wd~--~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~--~~~~~v~  228 (342)
                      .   .|.+.. .|-  .+-+.+.  ......+..++++++++.++. +.+|. +++.+...|+.-..+...  .....+.
T Consensus       181 ~---~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~-~~~G~-~~~s~~D~G~tW~~~~~~~~~~~~~~~  253 (327)
T 2xbg_A          181 S---RGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMI-VNGGK-IAFSDPDNSENWGELLSPLRRNSVGFL  253 (327)
T ss_dssp             T---TSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEE-ETTTE-EEEEETTEEEEECCCBCTTSSCCSCEE
T ss_pred             C---CCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEE-eCCce-EEEecCCCCCeeEeccCCcccCCcceE
Confidence            4   344433 342  2222221  234567889999999876654 55775 445543324432222211  0112488


Q ss_pred             EEEEecCCCcccEEEEEeCCCcE
Q 019349          229 SLSFGQSMQFQDILVATSSSGSL  251 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~s~dg~i  251 (342)
                      ++++.+++.   +++++ .+|.|
T Consensus       254 ~v~~~~~~~---~~~~g-~~g~i  272 (327)
T 2xbg_A          254 DLAYRTPNE---VWLAG-GAGAL  272 (327)
T ss_dssp             EEEESSSSC---EEEEE-STTCE
T ss_pred             EEEecCCCE---EEEEe-CCCeE
Confidence            899998877   55554 46776

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.56  E-value=0.0074  Score=54.25  Aligned_cols=145  Identities=14%  Similarity=0.185  Sum_probs=97.3

Q ss_pred             EcCCeEEEEECCeEEEEECCCCceeeEEeCCC--CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc---------
Q 019349          102 LNKKRLVIVLREKTYIYDANTLAILDTIDTVP--NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH---------  170 (342)
Q Consensus       102 ~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~---------  170 (342)
                      -+...++++.++.||.-++.+....+.+..+.  ....+..+..+|++.+||..|   +.+|.|..+..+.         
T Consensus        30 ~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g---~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           30 QNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN---DNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC---SSEEEEEECCTTCSCCCCHHHH
T ss_pred             cCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec---CCeEEEEEecCccccCcccccc
Confidence            35567777889999999988665666776652  222344466678888999987   4679998886221         


Q ss_pred             ---eeEEEec------ccCCeeEEEECCC---CCEEEEEeCCCcEEEEEEcCCCe--eEEEeccC-------cCceeEEE
Q 019349          171 ---SHCEIDA------HQAPLAAIVLSSN---GMYIATASEQGTIIRVFLVSEAT--KSYSFRRG-------TYPSTIFS  229 (342)
Q Consensus       171 ---~~~~~~~------h~~~v~~i~~s~d---g~~lat~s~dg~~irlwd~~~~~--~~~~~~~~-------~~~~~v~~  229 (342)
                         ..+.+.-      ...+|..+.|+|-   |..|++=-.|++ ||+||+....  .. .+...       .....|.+
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~-Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDT-ITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSC-EEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCE-EEEEEcccCCCCCc-chhccccccCCCcccceEEE
Confidence               1123332      2568999999995   468998889987 6999998532  11 22211       11245899


Q ss_pred             EEEecCCCcccEEEEEe--CCCcEEEE
Q 019349          230 LSFGQSMQFQDILVATS--SSGSLHVF  254 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s--~dg~i~vw  254 (342)
                      ++|.+++-   .|.+.+  ..|.|+-.
T Consensus       185 ~~Fg~~~l---TLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          185 LEFSKDGL---TLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EEECTTSS---CEEEEECTTSCEEEEE
T ss_pred             EEEcCCCc---EEEEEecCCCCCEEEE
Confidence            99999875   566644  77887654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.55  E-value=0.044  Score=49.40  Aligned_cols=177  Identities=10%  Similarity=-0.002  Sum_probs=104.6

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcC--CeEEEEE--CCeEEEEECCCCc----eeeEEeCCCCCceEEEEeeCC
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANTLA----ILDTIDTVPNLKGLCAFSPSL  145 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~  145 (342)
                      .+.|+..|+........+.....+.++++++  +.++.+.  .+.|+.+++....    ....+..  .......++.++
T Consensus        91 ~~~I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~--~~~~p~glavD~  168 (400)
T 3p5b_L           91 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISR--DIQAPDGLAVDW  168 (400)
T ss_dssp             TTEEEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECS--SCSCEEEEEEET
T ss_pred             cceeEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeC--CCCCcccEEEEe
Confidence            4688888887766555555556788899875  4555554  5688888886521    2222221  122333444444


Q ss_pred             CccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe-C-CCcEEEEEEcCCCeeEEEeccCcC
Q 019349          146 NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS-E-QGTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s-~-dg~~irlwd~~~~~~~~~~~~~~~  223 (342)
                      .+..|..+.. ..+.|.+.++........+...-.....|+++|.+.+|.-+. . .+. |...++. |.....+... .
T Consensus       169 ~~~~lY~~d~-~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~-I~~~~~d-G~~~~~~~~~-~  244 (400)
T 3p5b_L          169 IHSNIYWTDS-VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-N  244 (400)
T ss_dssp             TTTEEEEEET-TTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCC-EEEEETT-SCSCEEEECS-S
T ss_pred             cCCceEEEEC-CCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCE-EEEEeCC-CCccEEEEEC-C
Confidence            2334444443 468899999876554444443445578999999666555544 2 255 5677875 4333333211 1


Q ss_pred             ceeEEEEEEecCCCcccEEEEE-eCCCcEEEEecCCC
Q 019349          224 PSTIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPGFA  259 (342)
Q Consensus       224 ~~~v~~l~fs~d~~~~~~l~~~-s~dg~i~vwd~~~~  259 (342)
                      -.....|++++++.   .|..+ +..+.|..+|++..
T Consensus       245 l~~P~glavd~~~~---~lY~aD~~~~~I~~~d~dG~  278 (400)
T 3p5b_L          245 IQWPNGITLDLLSG---RLYWVDSKLHSISSIDVNGG  278 (400)
T ss_dssp             CSCEEEEEEETTTT---EEEEEETTTTEEEEEETTSC
T ss_pred             CCceEEEEEEeCCC---EEEEEECCCCEEEEEeCCCC
Confidence            23468899998776   55554 56678999998753

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.55  E-value=0.0072  Score=62.18  Aligned_cols=220  Identities=12%  Similarity=0.193  Sum_probs=135.3

Q ss_pred             EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEE-cCCeEE
Q 019349           30 FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKRLV  108 (342)
Q Consensus        30 ~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~~~  108 (342)
                      +.|-|+.++........ .-...-|.+..+.+++-++        +++.|+|+.+.+.+.++.++.+|.=-.| +++.+.
T Consensus        50 vvIidl~~~~~~~rrpi-~AdsAIMnP~~~iiALrag--------~~lQiFnl~~k~klks~~~~e~VvfWkWis~~~l~  120 (1630)
T 1xi4_A           50 VVIIDMNDPSNPIRRPI-SADSAIMNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNTVA  120 (1630)
T ss_pred             EEEEECCCCCCcccccc-cchhhccCCCcceEEEecC--------CeEEEeehHHhhhhcccccCCCceEEEecCCCeeE
Confidence            56777766543221111 1112234556677777653        7999999999999999988888766666 778888


Q ss_pred             EEECCeEEEEECCCC-ceeeEEeCCC--CCceEEEEeeCCCccEEEEeCC-----CCccEEEEEEccCCceeEEEecccC
Q 019349          109 IVLREKTYIYDANTL-AILDTIDTVP--NLKGLCAFSPSLNACFLAVPAS-----TTKGSVLVYNVMELHSHCEIDAHQA  180 (342)
Q Consensus       109 ~~~d~~i~i~d~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~-----~~~g~i~iwd~~~~~~~~~~~~h~~  180 (342)
                      ++++..|+-|++... .+++-++.+.  ....++.+..+++..+++..|-     ...|.+++|..+.+ ..+.++||..
T Consensus       121 lVT~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~-~sQ~iegha~  199 (1630)
T 1xi4_A          121 LVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAA  199 (1630)
T ss_pred             EEcCCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc-cchhhhHhHh
Confidence            899999999999642 3333333322  2345777778888888876552     14588999987764 3345677776


Q ss_pred             CeeEEEECC---CCCEEEEEeC--CCcEEEEEEcCCC---eeEE-----E--eccCcCceeEEEEEEecCCCcccEEEEE
Q 019349          181 PLAAIVLSS---NGMYIATASE--QGTIIRVFLVSEA---TKSY-----S--FRRGTYPSTIFSLSFGQSMQFQDILVAT  245 (342)
Q Consensus       181 ~v~~i~~s~---dg~~lat~s~--dg~~irlwd~~~~---~~~~-----~--~~~~~~~~~v~~l~fs~d~~~~~~l~~~  245 (342)
                      ....+.+..   ....++.+..  .|.-++|-++...   ....     .  |+......-..+|..|+...   .+..-
T Consensus       200 ~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g---~iy~i  276 (1630)
T 1xi4_A          200 SFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVFLI  276 (1630)
T ss_pred             hhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccC---EEEEE
Confidence            554444421   1223333322  1223567777432   1100     0  11000011134577777776   88889


Q ss_pred             eCCCcEEEEecCCCCCC
Q 019349          246 SSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       246 s~dg~i~vwd~~~~~~~  262 (342)
                      +.-|.|++||++++...
T Consensus       277 tk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          277 TKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             ecCceEEEEecccchhh
Confidence            99999999999998753

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.53  E-value=0.0017  Score=63.84  Aligned_cols=116  Identities=7%  Similarity=0.080  Sum_probs=74.8

Q ss_pred             eEEEEeeC-CCccEEEEeCCC---CccEEEEEEccCC-ceeE-EEecccCCeeEEEECCCCCEEEEEeCCC----cEEEE
Q 019349          137 GLCAFSPS-LNACFLAVPAST---TKGSVLVYNVMEL-HSHC-EIDAHQAPLAAIVLSSNGMYIATASEQG----TIIRV  206 (342)
Q Consensus       137 ~~~~~~~~-~~~~~l~~~~~~---~~g~i~iwd~~~~-~~~~-~~~~h~~~v~~i~~s~dg~~lat~s~dg----~~irl  206 (342)
                      .+....++ ||+.+||+....   ...+|+++|+.++ +.+. .+..   ....++|+|||+.|+..+.|.    ..|.+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            45667888 899998876421   1246999999988 6321 1221   235688999999888877652    13567


Q ss_pred             EEcCCCee--EEEeccCcCceeEEEEEEecCCCcccEEEEEeC---CCcEEEEecCCC
Q 019349          207 FLVSEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS---SGSLHVFSPGFA  259 (342)
Q Consensus       207 wd~~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~---dg~i~vwd~~~~  259 (342)
                      +++.+++.  ...+... ......++.||||++   +|+..+.   ...|+++|++++
T Consensus       252 ~~lgt~~~~~~lv~~~~-~~~~~~~~~~SpDg~---~l~~~~~~~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEH-NPLFSAFMYKAADTN---TLCIGSQSPETAEVHLLDLRKG  305 (751)
T ss_dssp             EETTSCGGGCEEEEECC-CTTCEEEEEECTTSS---EEEEEEECSSCEEEEEEESSSC
T ss_pred             EECCCCchhcEEEEecC-CCceEEEEEECCCCC---EEEEEecCCCCceEEEEECCCC
Confidence            88876641  1222111 122356789999999   7877663   335888888765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.48  E-value=0.087  Score=51.87  Aligned_cols=177  Identities=10%  Similarity=-0.026  Sum_probs=102.9

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcC--CeEEEEE--CCeEEEEECCCC----ceeeEEeCCCCCceEEEEeeCC
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANTL----AILDTIDTVPNLKGLCAFSPSL  145 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~~----~~~~~~~~~~~~~~~~~~~~~~  145 (342)
                      ...|+..++........+.....+.+++++.  ..++++.  .+.|+.+++...    .....+.....  ....++.+.
T Consensus       403 ~~~Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~--~P~GLAvD~  480 (791)
T 3m0c_C          403 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQ--APDGLAVDW  480 (791)
T ss_dssp             BSSEEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCS--CCCEEEEET
T ss_pred             ccceeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCC--Ccceeeeee
Confidence            4577888877665544444455778888875  4555555  468888888653    11222221111  122333343


Q ss_pred             CccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC-C-CcEEEEEEcCCCeeEEEeccCcC
Q 019349          146 NACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE-Q-GTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~-d-g~~irlwd~~~~~~~~~~~~~~~  223 (342)
                      .+..|..+.. ..+.|.+.++........+...-.....|+++|.+.+|..+.. . ++ |...++. |.....+... .
T Consensus       481 ~~~~LY~tD~-~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~-I~~~~~d-G~~~~~lv~~-~  556 (791)
T 3m0c_C          481 IHSNIYWTDS-VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-N  556 (791)
T ss_dssp             TTTEEEEEET-TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCCEEEEECS-S
T ss_pred             cCCcEEEEec-CCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCe-EEEEecC-CCceEEEEeC-C
Confidence            3434444444 5789999998765444334444456889999997655555542 2 44 5678875 4443444222 2


Q ss_pred             ceeEEEEEEecCCCcccEEEEE-eCCCcEEEEecCCC
Q 019349          224 PSTIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPGFA  259 (342)
Q Consensus       224 ~~~v~~l~fs~d~~~~~~l~~~-s~dg~i~vwd~~~~  259 (342)
                      ......|++.+.+.   .|..+ ...+.|..++++..
T Consensus       557 l~~P~GLavD~~~~---~LYwaD~~~~~I~~~d~dG~  590 (791)
T 3m0c_C          557 IQWPNGITLDLLSG---RLYWVDSKLHSISSIDVNGG  590 (791)
T ss_dssp             CSCEEEEEEETTTT---EEEEEETTTTEEEEEETTSC
T ss_pred             CCCceEEEEecCCC---eEEEEeCCCCcEEEEecCCC
Confidence            23478899997766   55555 55678999998654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.39  E-value=0.057  Score=46.98  Aligned_cols=227  Identities=10%  Similarity=0.025  Sum_probs=127.0

Q ss_pred             EEEEEcCCcEEEEeCCCCc--EE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE-EEE-ecCC
Q 019349           21 GFALSTKDGFKIFDSSTGR--LC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL-REL-NFLT   95 (342)
Q Consensus        21 ~la~g~~~g~~v~d~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~-~~~-~~~~   95 (342)
                      +|+.+....++..+++...  .. ..........+.+....+.+..+..      ..+.|..++...+... ..+ ..-.
T Consensus         6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~------~~~~I~r~~~~g~~~~~~~~~~~l~   79 (318)
T 3sov_A            6 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV------SEEAIKRTEFNKTESVQNVVVSGLL   79 (318)
T ss_dssp             EEEEECEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEET------TTTEEEEEETTSSSCCCEEEEECCS
T ss_pred             EEEEEccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEEC------CCCcEEEEEccCCCceEEEEcCCCC
Confidence            4666666778889987653  11 1111122334555555566666654      3678999998765321 111 1112


Q ss_pred             ceEEEEEc--CCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce
Q 019349           96 SILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS  171 (342)
Q Consensus        96 ~v~~i~~~--~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~  171 (342)
                      ...++++.  ...++++.  .+.|.++++.... ...+.. ........++.+|.+..|..+.....+.|...++.....
T Consensus        80 ~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~-~~~l~~-~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~  157 (318)
T 3sov_A           80 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFW-QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR  157 (318)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CccEEEEEcCCCeEEEEECCCCEEEEEECCCCc-EEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCe
Confidence            45566665  34555554  4689999986532 222221 111223344445444455444321357888888764332


Q ss_pred             eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcE
Q 019349          172 HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL  251 (342)
Q Consensus       172 ~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i  251 (342)
                      ...+...-...+.|+++|++..|..+......|..+|+.. .....+..+ .......|++..+ .   ++.+-...+.|
T Consensus       158 ~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG-~~~~~~~~~-~~~~P~glav~~~-~---lywtd~~~~~V  231 (318)
T 3sov_A          158 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDG-TNRQAVVKG-SLPHPFALTLFED-I---LYWTDWSTHSI  231 (318)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS-CSCEEEECS-CCSCEEEEEEETT-E---EEEEETTTTEE
T ss_pred             EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCC-CceEEEecC-CCCCceEEEEeCC-E---EEEEecCCCeE
Confidence            2222222345689999998777777766555578888853 332333221 1233567887543 3   66666777889


Q ss_pred             EEEecCCCCC
Q 019349          252 HVFSPGFAIN  261 (342)
Q Consensus       252 ~vwd~~~~~~  261 (342)
                      ..++..+++.
T Consensus       232 ~~~~~~~G~~  241 (318)
T 3sov_A          232 LACNKYTGEG  241 (318)
T ss_dssp             EEEETTTCCS
T ss_pred             EEEECCCCCc
Confidence            9999866553

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.34  E-value=0.03  Score=48.71  Aligned_cols=156  Identities=10%  Similarity=0.079  Sum_probs=99.7

Q ss_pred             EEEEEcC--CeEEEEE--CCeEEEEECCCCceeeEEeCCC-----C-CceEEEEee---CCCccEEEEeCC---------
Q 019349           98 LAVRLNK--KRLVIVL--REKTYIYDANTLAILDTIDTVP-----N-LKGLCAFSP---SLNACFLAVPAS---------  155 (342)
Q Consensus        98 ~~i~~~~--~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~-----~-~~~~~~~~~---~~~~~~l~~~~~---------  155 (342)
                      .++.|++  ..+++..  .++|..|+...+..... ....     + ......+..   ++++.++++...         
T Consensus        16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~   94 (334)
T 2p9w_A           16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQ   94 (334)
T ss_dssp             SCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCTTSC
T ss_pred             cCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccccccccc
Confidence            4566754  5566665  78999999875543322 2211     1 123467777   677777764320         


Q ss_pred             --CCccEEEEEEcc---CCceeEEEe--ccc-----------CCeeEEEECCCCCEEEEEeCC-CcEEEEEEcCCCeeEE
Q 019349          156 --TTKGSVLVYNVM---ELHSHCEID--AHQ-----------APLAAIVLSSNGMYIATASEQ-GTIIRVFLVSEATKSY  216 (342)
Q Consensus       156 --~~~g~i~iwd~~---~~~~~~~~~--~h~-----------~~v~~i~~s~dg~~lat~s~d-g~~irlwd~~~~~~~~  216 (342)
                        ..+..|..+|+.   +++.+....  ...           ...+.|++.++|+..++++.- +.++ ..+.. |+.+.
T Consensus        95 ~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~-rV~pd-G~~~~  172 (334)
T 2p9w_A           95 SSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIA-RVSAD-GKTVS  172 (334)
T ss_dssp             CSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEE-EECTT-SCCEE
T ss_pred             ccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEE-EEeCC-CCEEe
Confidence              015779999999   777665443  211           248899999999999999887 7644 44543 44333


Q ss_pred             EeccC----cCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          217 SFRRG----TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       217 ~~~~~----~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      .+...    ....-.+.|+++||+.   .|++....|.+..+|++.+
T Consensus       173 ~~~~~~~~~~~~~G~nGIv~~pdg~---~Liv~~~~g~L~~fD~~~p  216 (334)
T 2p9w_A          173 TFAWESGNGGQRPGYSGITFDPHSN---KLIAFGGPRALTAFDVSKP  216 (334)
T ss_dssp             EEEECCCCSSSCCSCSEEEEETTTT---EEEEESSSSSEEEEECSSS
T ss_pred             eeeecCCCcccccCcceEEEeCCCC---EEEEEcCCCeEEEEcCCCC
Confidence            33211    1112267899999998   7888877999999998854

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=97.27  E-value=0.032  Score=50.85  Aligned_cols=153  Identities=9%  Similarity=0.037  Sum_probs=89.6

Q ss_pred             ceEEEEEcC---CeEEEEEC-CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC---CccEEEEEEccC
Q 019349           96 SILAVRLNK---KRLVIVLR-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST---TKGSVLVYNVME  168 (342)
Q Consensus        96 ~v~~i~~~~---~~~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~g~i~iwd~~~  168 (342)
                      ....+++++   ..++++.. +.|+.+|+..++......   .......++.++++..|..+...   ....+.+++.. 
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~---~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-  213 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS---GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-  213 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC---CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec---CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-
Confidence            346778885   23444443 688999988765443332   22345667777777755555421   11234444432 


Q ss_pred             Ccee--EEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEE
Q 019349          169 LHSH--CEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT  245 (342)
Q Consensus       169 ~~~~--~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~  245 (342)
                      +...  ..+.. ......++++| +|.++++-...++ |..++...+........+. ......|+|+|+++   +|..+
T Consensus       214 g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~-V~~~~~~~~~~~~~~~~~~-~~~P~gia~~pdG~---~lyv~  287 (430)
T 3tc9_A          214 SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQ-VFRYDFTTQETTPLFTIQD-SGWEFHIQFHPSGN---YAYIV  287 (430)
T ss_dssp             GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTE-EEEEETTTTEEEEEEECSS-SSCCEEEEECTTSS---EEEEE
T ss_pred             Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCE-EEEEECCCCcEEEEEEcCC-CCcceeEEEcCCCC---EEEEE
Confidence            2221  23332 23457789999 6776666656666 5789987765422222111 12357899999998   55555


Q ss_pred             -eCCCcEEEEecCC
Q 019349          246 -SSSGSLHVFSPGF  258 (342)
Q Consensus       246 -s~dg~i~vwd~~~  258 (342)
                       ...+.|+.++.+.
T Consensus       288 d~~~~~I~~~~~d~  301 (430)
T 3tc9_A          288 VVNQHYILRSDYDW  301 (430)
T ss_dssp             ETTTTEEEEEEEET
T ss_pred             ECCCCEEEEEeCCc
Confidence             5677899988764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.24  E-value=0.0013  Score=64.10  Aligned_cols=225  Identities=7%  Similarity=-0.030  Sum_probs=114.1

Q ss_pred             EEEEcCCcEEEEeCCCCcEEEEE-eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC----CcEEEEEec-CC
Q 019349           22 FALSTKDGFKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT----GTALRELNF-LT   95 (342)
Q Consensus        22 la~g~~~g~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~----~~~~~~~~~-~~   95 (342)
                      |+.+....+++.++.+.+..... .......+.+....+.+.++..      ..+.|..+++.+    ......+.. ..
T Consensus       380 ll~~~~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~------~~~~I~~~~~~g~~~~~~~~~~i~~~~~  453 (699)
T 1n7d_A          380 LFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRDIQ  453 (699)
T ss_dssp             BCCCCTTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCT------TTTSBEEEESCCCCC-CCCCCBCCSCC-
T ss_pred             EEecCccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEec------CCCeEEEEecCCCCCCcceEEEEeCCCC
Confidence            44445556777777765433211 1122223444444555555543      367888888764    121111111 11


Q ss_pred             ceEEEEEc--CCeEEEEE--CCeEEEEECCCCceeeEEeCC-CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc
Q 019349           96 SILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (342)
Q Consensus        96 ~v~~i~~~--~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~  170 (342)
                      ...+|++.  ...++++.  .+.|.++++........+... ..+.   .++.+|.+..|..+.....+.|.++++....
T Consensus       454 ~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~---giavDp~~g~ly~td~~~~~~I~~~~~dG~~  530 (699)
T 1n7d_A          454 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPR---AIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  530 (699)
T ss_dssp             -CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCC---CEECCSSSSCCEECCCSSSCCEEBCCSSSCC
T ss_pred             CcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcc---eEEEccCCCcEEEcccCCCCeEEEEeCCCCC
Confidence            33456665  34455543  468999988654332222211 2232   3344554444544442123678887765432


Q ss_pred             eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC-cCceeEEEEEEecCCCcccEEEEEeCCC
Q 019349          171 SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSSSG  249 (342)
Q Consensus       171 ~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~-~~~~~v~~l~fs~d~~~~~~l~~~s~dg  249 (342)
                      ....+...-...+.|+|+|++..|..+......|..+|+... ....+... ........|++..+ .   ++.+....+
T Consensus       531 ~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~-~~~~~~~~~~~~~~P~glavd~~-~---lywtd~~~~  605 (699)
T 1n7d_A          531 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGG-NRKTILEDEKRLAHPFSLAVFED-K---VFWTDIINE  605 (699)
T ss_dssp             CCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSS-CCEEECCCSSSCSSCCCCEEETT-E---EEEECSTTT
T ss_pred             eeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCC-ceEEEEecCCcCCCceEeEEECC-E---EEEEeCCCC
Confidence            221222223446789999987666665544444678888643 22333221 11122445666554 3   566667778


Q ss_pred             cEEEEecCCCC
Q 019349          250 SLHVFSPGFAI  260 (342)
Q Consensus       250 ~i~vwd~~~~~  260 (342)
                      .|..++..+++
T Consensus       606 ~V~~~d~~~G~  616 (699)
T 1n7d_A          606 AIFSANRLTGS  616 (699)
T ss_dssp             CEEEEETTTEE
T ss_pred             eEEEEEccCCC
Confidence            99999976544

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.15  E-value=0.21  Score=48.89  Aligned_cols=228  Identities=11%  Similarity=0.103  Sum_probs=130.4

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEE---eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYER---AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      +...|++|.-.++|. |=.|+.+|+..||-...+.....   ....+..+... ....+.+.+        .+-+..+|.
T Consensus        20 ~~n~V~~I~qD~~G~-lWigT~~GL~ryDG~~~~~~~~~~~~~~~~i~~i~~d-~~g~lWigT--------~~Gl~~yd~   89 (758)
T 3ott_A           20 EASVVSCFLQDSEGL-IWIGSNKGLFSYDGYSTQQHFTYGENNNTRIYCGVII-DNTYLYMGT--------DNGILVYNY   89 (758)
T ss_dssp             SCCCEEEEEECTTSC-EEEEESSCEEEECSSCEEECSCTTSTTSSCEEEEEEE-TTTEEEEEE--------TTEEEEEET
T ss_pred             ccceEEEEEECCCCC-EEEEECCCccccCCCceEEEEccCCCCCceEEEEEEc-CCCcEEEEe--------CCCeEEEeC
Confidence            356799999999886 44677899988885432211100   01123322222 223444443        245788998


Q ss_pred             CCCcEEEEE-ecCCceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEe---CCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349           83 TTGTALREL-NFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTID---TVPNLKGLCAFSPSLNACFLAVPASTTK  158 (342)
Q Consensus        83 ~~~~~~~~~-~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~  158 (342)
                      .+.+..... .....|.++......+.+++.+-+..||..+.+.. .+.   .......+.++..+.++.+.+...   +
T Consensus        90 ~~~~f~~~~~~~~~~i~~i~~~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigt~---~  165 (758)
T 3ott_A           90 RADRYEQPETDFPTDVRTMALQGDTLWLGALNGLYTYQLQSRKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYVGTY---N  165 (758)
T ss_dssp             TTTEECCCSCCCCSCEEEEEEETTEEEEEETTEEEEEETTTCCEE-EECHHHHCCSCSCEEEEEECTTCCEEEEET---T
T ss_pred             CCCEEECcccCCCceEEEEEecCCcEEEEcCCcceeEeCCCCeEE-EeccCCCCcCCCeEEEEEEcCCCCEEEEeC---C
Confidence            776432210 01235777766677788888778999998766533 221   111123466777776666665432   3


Q ss_pred             cEEEEEEccCCceeEEEe--cc----cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349          159 GSVLVYNVMELHSHCEID--AH----QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  232 (342)
Q Consensus       159 g~i~iwd~~~~~~~~~~~--~h----~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f  232 (342)
                      | +..+|..+.+.. .+.  ..    ...|.+|...+++..|-.|...| + ..+|..+++.. .+.. .....|.++..
T Consensus       166 G-l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~G-l-~~~~~~~~~~~-~~~~-l~~~~i~~i~~  239 (758)
T 3ott_A          166 G-LCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEGY-L-FQYFPSTGQIK-QTEA-FHNNSIKSLAL  239 (758)
T ss_dssp             E-EEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEEEE-E-EEEETTTTEEE-EEEE-EEEEEEEEEEE
T ss_pred             C-HhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEECCC-C-eEEcCCCCeEE-eccC-CCCCeEEEEEE
Confidence            4 778887765432 221  11    12488888888776555555444 4 47898776532 2211 11234888888


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          233 GQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       233 s~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      .+++.    |..|+.+ -+.+++.++
T Consensus       240 d~~g~----lWigT~~-Gl~~~~~~~  260 (758)
T 3ott_A          240 DGNGD----LLAGTDN-GLYVYHNDT  260 (758)
T ss_dssp             CTTCC----EEEEETT-EEEEECCTT
T ss_pred             cCCCC----EEEEeCC-ceeEEecCC
Confidence            88886    4455544 577887654

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.03  E-value=0.081  Score=47.60  Aligned_cols=101  Identities=13%  Similarity=0.110  Sum_probs=70.5

Q ss_pred             ccEEEEEEccCCceeEEEecc----cCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe------------eEEEeccC
Q 019349          158 KGSVLVYNVMELHSHCEIDAH----QAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT------------KSYSFRRG  221 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h----~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~------------~~~~~~~~  221 (342)
                      ++.||.-++......+.++..    -..|..+..||+|++||..+..+  |.|-.+..+.            ....+.-+
T Consensus        40 ~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~--V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~  117 (452)
T 3pbp_A           40 DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNE--IFVMEVPWGYSNVEDVSIQDAFQIFHYSID  117 (452)
T ss_dssp             TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSE--EEEEECCTTCSCCCCHHHHHTTEEEEEEGG
T ss_pred             CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCe--EEEEEecCccccCcccccccccceeEEEcC
Confidence            477998888754444454432    23688899999999999998764  4688887332            11223222


Q ss_pred             c----CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          222 T----YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       222 ~----~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      .    ...+|..+.|||-+.....|++-..|++|++||+....
T Consensus       118 ~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~  160 (452)
T 3pbp_A          118 EEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ  160 (452)
T ss_dssp             GCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred             CcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence            1    13569999999976422389999999999999998743

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=96.99  E-value=0.19  Score=45.34  Aligned_cols=226  Identities=13%  Similarity=0.175  Sum_probs=122.2

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      .+.|.|.|+.++..+.......  -+.-.+|...+++.  ..++.|||+++.+.++..........-..++.  +  .|+
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi~A--dsAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~e~VvfWkWis~--~--~l~  120 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPISA--DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDDVTFWKWISL--N--TVA  120 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEECCC--SEEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECSSCCCEEEEEET--T--EEE
T ss_pred             CCeEEEEECCCCCcceeccccc--ceeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecCCCceEEEecCC--C--eEE
Confidence            5689999998876654333222  22334555444444  77999999999998888876554322223332  2  555


Q ss_pred             EeCCCCccEEEEEEccC-CceeEEEeccc----CCeeEEEECCCCCEEEEEeC---C----CcEEEEEEcCCCeeEEEec
Q 019349          152 VPASTTKGSVLVYNVME-LHSHCEIDAHQ----APLAAIVLSSNGMYIATASE---Q----GTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~-~~~~~~~~~h~----~~v~~i~~s~dg~~lat~s~---d----g~~irlwd~~~~~~~~~~~  219 (342)
                      ...   +..|.-|++.. ..++..+..|.    ..|..-..+++.++++-.+-   +    |. +.+|.++.+.. ..+.
T Consensus       121 lVT---~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~-mQLYS~er~~s-Q~ie  195 (494)
T 1bpo_A          121 LVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA-MQLYSVDRKVS-QPIE  195 (494)
T ss_dssp             EEC---SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEE-EEEEESTTCCE-EEEC
T ss_pred             EEc---CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccce-EEEeecccccc-chhe
Confidence            553   46799999864 35777777664    35777778999998775432   3    44 57888865432 2222


Q ss_pred             cCcCceeEEEEEEecCCCcccEEEEEeCC---CcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeecc
Q 019349          220 RGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAF  296 (342)
Q Consensus       220 ~~~~~~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (342)
                       + |.+.-..+.+.-+..-..+++.+...   +.+||-++..+.....         .+.-..+...+.|+.....-..+
T Consensus       196 -G-haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~---------~f~kk~vdv~fppe~~~DFPvam  264 (494)
T 1bpo_A          196 -G-HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQ---------PFPKKAVDVFFPPEAQNDFPVAM  264 (494)
T ss_dssp             -C-SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCC---------CCCCEEEECCCCTTSTTCCEEEE
T ss_pred             -e-eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCC---------CccceeeeeeCCcccccCceeEE
Confidence             2 11111111111010000134444332   7899999976521110         01101111112221100000112


Q ss_pred             CCCccccEEEEEEeCCcEEEEEEec
Q 019349          297 PAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       297 ~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      ....+-..++..+.-|.+++|++.+
T Consensus       265 qvs~kygviyviTK~G~i~lyDleT  289 (494)
T 1bpo_A          265 QISEKHDVVFLITKYGYIHLYDLET  289 (494)
T ss_dssp             EEETTTTEEEEEETTSEEEEEETTT
T ss_pred             EecccCCEEEEEecCceEEEEeccc
Confidence            2244557899999999999997643

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=96.87  E-value=0.047  Score=49.77  Aligned_cols=155  Identities=9%  Similarity=0.016  Sum_probs=86.2

Q ss_pred             ceEEEEEcCC---e-EEEEEC-CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC-C-ccEEEEEEccC
Q 019349           96 SILAVRLNKK---R-LVIVLR-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-T-KGSVLVYNVME  168 (342)
Q Consensus        96 ~v~~i~~~~~---~-~~~~~d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~-~g~i~iwd~~~  168 (342)
                      ....++++++   . ++++.. +.|+.+|..+++......   .......++.++++.++++.... . ...+...+...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~---~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT---NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC---CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec---CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCC
Confidence            3567888863   4 444432 689999988776543322   22235566667777644433210 0 11233333322


Q ss_pred             Cce-eEEEecccCCeeEEEECC-CCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEE-
Q 019349          169 LHS-HCEIDAHQAPLAAIVLSS-NGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT-  245 (342)
Q Consensus       169 ~~~-~~~~~~h~~~v~~i~~s~-dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~-  245 (342)
                      ... ...+. .......++++| +|.+.++-..+++ |+.+|..++.....+........-..|+|+|+++   +|..+ 
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~-V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~---~LYvad  291 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAM-ISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGD---WAYIIY  291 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSE-EEEECTTTCCEEEEEEECSCCSSCEEEEECTTSS---EEEEEE
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCE-EEEEECCCCeEEEEEeccCCCCCcccEEEeCCCC---EEEEEe
Confidence            211 11222 234457789999 6776666555665 5788988776522221111111234699999997   55554 


Q ss_pred             eCCCcEEEEecCC
Q 019349          246 SSSGSLHVFSPGF  258 (342)
Q Consensus       246 s~dg~i~vwd~~~  258 (342)
                      ...+.|+.++++.
T Consensus       292 ~~~~~I~~~~~d~  304 (433)
T 4hw6_A          292 NGKHCIYRVDYNR  304 (433)
T ss_dssp             TTTTEEEEEEBCT
T ss_pred             CCCCEEEEEeCCC
Confidence            5567899988763

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.84  E-value=0.19  Score=42.90  Aligned_cols=229  Identities=9%  Similarity=0.062  Sum_probs=109.5

Q ss_pred             CCCEEEEEc-CC------cEEEEeCCCCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc--
Q 019349           18 DNSGFALST-KD------GFKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT--   86 (342)
Q Consensus        18 d~~~la~g~-~~------g~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~--   86 (342)
                      ++..++.|+ .+      .+.+||+.+.+...-...  .......... .+.+.+.||.. .....+.+.++|..+++  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~-~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYD-GRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBC-SSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCC-CCccCceEEEEECCCCCCC
Confidence            455566666 22      357888877653321111  1111111112 34555555522 11124679999998877  


Q ss_pred             -EEEEEecCC--ceEEEEEcCCeEEEEE-------CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           87 -ALRELNFLT--SILAVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        87 -~~~~~~~~~--~v~~i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                       ....-..+.  .-.++....+.+++..       .+.+.+||+.+.+-...-..+.......+...  ++..++.+|.+
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  169 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYD  169 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCC
Confidence             443322222  1122333355666654       24689999877642222122222222222222  34566666632


Q ss_pred             C---ccEEEEEEccCCceeE--EEecccCCeeEEEECCCCCEEEEEeCCC-----cEEEEEEcCCCeeEEEeccCcCcee
Q 019349          157 T---KGSVLVYNVMELHSHC--EIDAHQAPLAAIVLSSNGMYIATASEQG-----TIIRVFLVSEATKSYSFRRGTYPST  226 (342)
Q Consensus       157 ~---~g~i~iwd~~~~~~~~--~~~~h~~~v~~i~~s~dg~~lat~s~dg-----~~irlwd~~~~~~~~~~~~~~~~~~  226 (342)
                      .   ...+.+||+.+.+=..  .+......-.++.+  +++.++.|+.++     . +.+||+.+.+-.. +.....+..
T Consensus       170 ~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~-v~~yd~~~~~W~~-~~~~p~~r~  245 (301)
T 2vpj_A          170 GLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSS-VEAYNIRTDSWTT-VTSMTTPRC  245 (301)
T ss_dssp             SSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEE-ECCCSSCCB
T ss_pred             CCcccceEEEEeCCCCcEEeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccce-EEEEeCCCCcEEE-CCCCCCccc
Confidence            1   2468899987764221  12111111222333  567788887642     3 4689998775322 211111111


Q ss_pred             EEEEEEecCCCcccEEEEEeCC-----CcEEEEecCC
Q 019349          227 IFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGF  258 (342)
Q Consensus       227 v~~l~fs~d~~~~~~l~~~s~d-----g~i~vwd~~~  258 (342)
                      -.+++. -+++   +++.|+.+     +.|.+||+++
T Consensus       246 ~~~~~~-~~~~---i~v~GG~~~~~~~~~v~~yd~~~  278 (301)
T 2vpj_A          246 YVGATV-LRGR---LYAIAGYDGNSLLSSIECYDPII  278 (301)
T ss_dssp             SCEEEE-ETTE---EEEECCBCSSSBEEEEEEEETTT
T ss_pred             ceeEEE-ECCE---EEEEcCcCCCcccccEEEEcCCC
Confidence            112222 2566   67777655     3577787664

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=96.84  E-value=0.087  Score=48.70  Aligned_cols=156  Identities=10%  Similarity=0.001  Sum_probs=89.6

Q ss_pred             eEEEEEcC---CeEEEEEC--CeEEEEECCCCceeeEEeCCC-CCceEEEEee-------CCCccEEEEeCCCC-----c
Q 019349           97 ILAVRLNK---KRLVIVLR--EKTYIYDANTLAILDTIDTVP-NLKGLCAFSP-------SLNACFLAVPASTT-----K  158 (342)
Q Consensus        97 v~~i~~~~---~~~~~~~d--~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~-------~~~~~~l~~~~~~~-----~  158 (342)
                      ...|+++|   +.++++.+  +.|++.|+.++.+...+.... .......+++       ++++..|.++....     .
T Consensus       141 p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~  220 (496)
T 3kya_A          141 NGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDES  220 (496)
T ss_dssp             EEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGE
T ss_pred             CCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccC
Confidence            56788886   35666663  478889988876554443322 2234666777       77776555554311     1


Q ss_pred             cEEEEEEccC-Ccee-----EEEecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcC-------CCee----------
Q 019349          159 GSVLVYNVME-LHSH-----CEIDAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFLVS-------EATK----------  214 (342)
Q Consensus       159 g~i~iwd~~~-~~~~-----~~~~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~-------~~~~----------  214 (342)
                      ..|.+++... ++..     ..+.... ....++++|+ +.++++-..++. |..+|+.       ++..          
T Consensus       221 ~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~~g~LYvtd~~~g~-V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          221 PSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPINGELYFNSYEKGQ-VFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTTTCCEEEEETTTTE-EEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             ceEEEEecCCCCceeecccceeeccCC-CceEEEEcCCCCeEEEEECCCCE-EEEEecccccccccCceeeccccccccc
Confidence            2366666433 2221     2333222 3467889994 555556666666 4689987       5543          


Q ss_pred             -EEEeccCcCceeEEEEEEecCCCcccEEEEE-eCCCcEEEEecC
Q 019349          215 -SYSFRRGTYPSTIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPG  257 (342)
Q Consensus       215 -~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~-s~dg~i~vwd~~  257 (342)
                       ...+.........+.|+|+|++.   +|..+ +..+.|+.++.+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~---~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGK---YAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSS---EEEEEETTTTEEEEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCC---EEEEEeCCCCEEEEEecC
Confidence             11211111122357899999998   54444 567789987754

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=96.74  E-value=0.65  Score=47.74  Aligned_cols=170  Identities=13%  Similarity=0.141  Sum_probs=104.1

Q ss_pred             CeEEEEECCCCcEEEEEecCC--ceEEEE---EcC---CeEEEEE-----------CCeEEEEECCCCce--eeEEeCCC
Q 019349           75 RRLCLFNTTTGTALRELNFLT--SILAVR---LNK---KRLVIVL-----------REKTYIYDANTLAI--LDTIDTVP  133 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~--~v~~i~---~~~---~~~~~~~-----------d~~i~i~d~~~~~~--~~~~~~~~  133 (342)
                      ..|++.|..+.+.+..+++..  .+.+++   +..   ..+++.+           .|.|++|++.+.++  +.+.+.  
T Consensus       807 s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v--  884 (1158)
T 3ei3_A          807 HNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEV--  884 (1158)
T ss_dssp             EEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEE--
T ss_pred             EEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEc--
Confidence            468999999888888877654  455554   332   3455544           25799999875432  333222  


Q ss_pred             CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEE--EEcCC
Q 019349          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRV--FLVSE  211 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irl--wd~~~  211 (342)
                       ...+.+++.-. +.++|..|    ..|++|++...+.+..-..+-..|..+.....|++++.|..-..+ .+  |+...
T Consensus       885 -~g~v~al~~~~-g~Lla~ig----~~l~vy~l~~~~~L~~~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv-~~~~y~~~~  957 (1158)
T 3ei3_A          885 -KGAVYSMVEFN-GKLLASIN----STVRLYEWTTEKELRTECNHYNNIMALYLKTKGDFILVGDLMRSV-LLLAYKPME  957 (1158)
T ss_dssp             -SSCEEEEEEET-TEEEEEET----TEEEEEEECTTSCEEEEEEECCCSCEEEEEEETTEEEEEESSBCE-EEEEEETTT
T ss_pred             -CCcCEEEeeeC-CEEEEEcC----CEEEEEECCCCceEEEEeeccccEEEEEEeccCCEEEEEEhhheE-EEEEEEcCC
Confidence             23455666543 45666555    679999998765443111112223333343457888888765543 23  45444


Q ss_pred             CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          212 ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      + .+..+.+...+..++++.|=.++    .++.+..+|.+.+.....
T Consensus       958 ~-~L~~~a~D~~~~~vta~~~ld~~----t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          958 G-NFEEIARDFNPNWMSAVEILDDD----NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             T-EEEEEEECCSCBCEEEEEEEETT----EEEEEETTSEEEEEEECT
T ss_pred             C-eEEEEEeecccccEEEEEEEccC----cEEEEcCCCcEEEEecCC
Confidence            3 34455444456668888887665    578899999999998765

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=96.68  E-value=0.28  Score=42.68  Aligned_cols=189  Identities=10%  Similarity=0.041  Sum_probs=106.4

Q ss_pred             EEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC---------ceEEEEE---cCC-eEEEEEC-------
Q 019349           53 EMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT---------SILAVRL---NKK-RLVIVLR-------  112 (342)
Q Consensus        53 ~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~---------~v~~i~~---~~~-~~~~~~d-------  112 (342)
                      .|......+.+.+.      ..++|..||...+..... ..+.         .+.++.+   .++ +++++.+       
T Consensus        19 ~wd~~~g~~~vs~l------~~g~V~~~~~~~~~~~~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           19 IYDRTRQVFYQSNL------YKGRIEVYNPKTQSHFNV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             EEETTTTEEEEEET------TTTEEEEECTTTCCEEEE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             cCcCCCCEEEEEec------cCCEEEEEcCCCCeEEEE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            33333445555543      478999999876644333 3332         3578999   455 4555333       


Q ss_pred             --------CeEEEEECC---CCceeeEEeCCC-----------CCceEEEEeeCCCccEEEEeCCCCc-cEEEEEEccCC
Q 019349          113 --------EKTYIYDAN---TLAILDTIDTVP-----------NLKGLCAFSPSLNACFLAVPASTTK-GSVLVYNVMEL  169 (342)
Q Consensus       113 --------~~i~i~d~~---~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~l~~~~~~~~-g~i~iwd~~~~  169 (342)
                              ..+..||+.   +++.+.......           .......+..++++...++...  . +.|...+....
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~--~~~~I~rV~pdG~  169 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL--GMPAIARVSADGK  169 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE--SSCEEEEECTTSC
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC--CCCeEEEEeCCCC
Confidence                    579999999   787776664321           1223556777777766665442  3 55555554432


Q ss_pred             ceeEEEe------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCee--EEEecc-Cc--CceeEEE-EEEecCCC
Q 019349          170 HSHCEID------AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATK--SYSFRR-GT--YPSTIFS-LSFGQSMQ  237 (342)
Q Consensus       170 ~~~~~~~------~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~--~~~~~~-~~--~~~~v~~-l~fs~d~~  237 (342)
                       .+..+.      ...-..+.|+++|||+.|+.....|.+ .-+|+.+...  +. ..+ +.  ....... +.--.+++
T Consensus       170 -~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L-~~fD~~~pv~~~v~-~~~~G~~~~~~~~dgilp~~~~G~  246 (334)
T 2p9w_A          170 -TVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRAL-TAFDVSKPYAWPEP-VKINGDFGTLSGTEKIVTVPVGNE  246 (334)
T ss_dssp             -CEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSE-EEEECSSSSCCCEE-CEESSCCCCCTTEEEEEEEEETTE
T ss_pred             -EEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeE-EEEcCCCCcceeec-ccccCCcccccCcccccccccCCE
Confidence             222221      112236799999999999988778886 4789875433  21 110 11  0001233 34445676


Q ss_pred             cccE-EEEEeCCCcEEEEec
Q 019349          238 FQDI-LVATSSSGSLHVFSP  256 (342)
Q Consensus       238 ~~~~-l~~~s~dg~i~vwd~  256 (342)
                         . |++.+..+.+.+.+-
T Consensus       247 ---vllV~~~~~~~~~l~S~  263 (334)
T 2p9w_A          247 ---SVLVGARAPYAISFRSW  263 (334)
T ss_dssp             ---EEEEEEETTEEEEEECS
T ss_pred             ---EEEEEcCCCCEEEEECC
Confidence               5 555555666666553

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=96.58  E-value=0.62  Score=45.49  Aligned_cols=223  Identities=9%  Similarity=0.106  Sum_probs=127.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      ...|.++.-.++|. |-+|+.+|+..||..+.+.....  ....+..+..  ....+.+.+.        +.|..+|..+
T Consensus        62 ~~~i~~i~~d~~g~-lWigT~~Gl~~yd~~~~~f~~~~~~~~~~i~~i~~--~~g~lWigt~--------~Gl~~~~~~~  130 (758)
T 3ott_A           62 NTRIYCGVIIDNTY-LYMGTDNGILVYNYRADRYEQPETDFPTDVRTMAL--QGDTLWLGAL--------NGLYTYQLQS  130 (758)
T ss_dssp             SSCEEEEEEETTTE-EEEEETTEEEEEETTTTEECCCSCCCCSCEEEEEE--ETTEEEEEET--------TEEEEEETTT
T ss_pred             CceEEEEEEcCCCc-EEEEeCCCeEEEeCCCCEEECcccCCCceEEEEEe--cCCcEEEEcC--------CcceeEeCCC
Confidence            45689988887764 66777889999998776432210  0112332222  2344555442        3788889877


Q ss_pred             CcEEEEEe-----c-CCceEEEEEcC-CeEEEEECCeEEEEECCCCceeeEEeCCCC----CceEEEEeeCCCccEEEEe
Q 019349           85 GTALRELN-----F-LTSILAVRLNK-KRLVIVLREKTYIYDANTLAILDTIDTVPN----LKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        85 ~~~~~~~~-----~-~~~v~~i~~~~-~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~  153 (342)
                      ++.. .+.     . ...|.++...+ ..+.+++.+-+..|+..+.+.. .+.....    ...+.++..+.++..|-.+
T Consensus       131 ~~~~-~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWig  208 (758)
T 3ott_A          131 RKLT-SFDTRRNGLPNNTIYSIIRTKDNQIYVGTYNGLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIG  208 (758)
T ss_dssp             CCEE-EECHHHHCCSCSCEEEEEECTTCCEEEEETTEEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEE
T ss_pred             CeEE-EeccCCCCcCCCeEEEEEEcCCCCEEEEeCCCHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEE
Confidence            6543 231     1 23688888764 4677777777888998766432 2222111    1235566666544322222


Q ss_pred             CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC------cCceeE
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG------TYPSTI  227 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~------~~~~~v  227 (342)
                      .   ++-+..+|..+++...........|.+|...++|.+.+. +.+| + .+++..+++. ..+...      .....|
T Consensus       209 t---~~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWig-T~~G-l-~~~~~~~~~~-~~~~~~~~~~~~l~~~~i  281 (758)
T 3ott_A          209 T---EGYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAG-TDNG-L-YVYHNDTTPL-QHIIHDSRNIQSLTNNII  281 (758)
T ss_dssp             E---EEEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEE-ETTE-E-EEECCTTSCC-EEECCCTTCTTSCSCSCE
T ss_pred             E---CCCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEE-eCCc-e-eEEecCCCcE-EEEEcCCCCcCcCCcCeE
Confidence            2   245888998766432211112346899998888876554 4555 4 5788776543 222211      112348


Q ss_pred             EEEEEecCCCcccEEEEEeCCCcEEEE
Q 019349          228 FSLSFGQSMQFQDILVATSSSGSLHVF  254 (342)
Q Consensus       228 ~~l~fs~d~~~~~~l~~~s~dg~i~vw  254 (342)
                      .++....++.    |-.|+..| +.++
T Consensus       282 ~~i~~D~~g~----lWiGT~~G-l~~~  303 (758)
T 3ott_A          282 WNIFADQEHN----IWLGTDYG-ISLS  303 (758)
T ss_dssp             EEEEECTTCC----EEEEESSS-EEEE
T ss_pred             EEEEEcCCCC----EEEEeCCc-cccc
Confidence            8888887776    44555556 5444

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.48  E-value=0.38  Score=41.77  Aligned_cols=151  Identities=8%  Similarity=0.033  Sum_probs=83.5

Q ss_pred             CCceEEEEEcCCeEEEE-E-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce
Q 019349           94 LTSILAVRLNKKRLVIV-L-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS  171 (342)
Q Consensus        94 ~~~v~~i~~~~~~~~~~-~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~  171 (342)
                      ...+..+.+.++..+++ . .+.++.-+=..++.-..+.. .....+..+...+++..++...   +|.+.+.+...++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~-~~~~~~~~~~~~~~g~~~~~~~---~G~~~~s~~D~G~t  237 (327)
T 2xbg_A          162 IGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNR-TTSRRLHNMGFTPDGRLWMIVN---GGKIAFSDPDNSEN  237 (327)
T ss_dssp             CCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEEC-CSSSCEEEEEECTTSCEEEEET---TTEEEEEETTEEEE
T ss_pred             CcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECCC-CCCCccceeEECCCCCEEEEeC---CceEEEecCCCCCe
Confidence            34678888876644443 3 45444332111222222222 2233455666667776665543   57777764222332


Q ss_pred             eEEEe----cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc-CceeEEEEEEecCCCcccEEEEEe
Q 019349          172 HCEID----AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-YPSTIFSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       172 ~~~~~----~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~-~~~~v~~l~fs~d~~~~~~l~~~s  246 (342)
                      -..+.    .+...+.++++.+++..++.+. +|. + ++....|+.-..+.... .+..++++.|.+++.    +++++
T Consensus       238 W~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~-i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~----~~~~G  310 (327)
T 2xbg_A          238 WGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGA-L-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ----GFILG  310 (327)
T ss_dssp             ECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTC-E-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE----EEEEC
T ss_pred             eEeccCCcccCCcceEEEEecCCCEEEEEeC-CCe-E-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc----eEEEc
Confidence            22221    1224588999999888777655 666 3 46665565444443221 134578899986664    66777


Q ss_pred             CCCcEEEEe
Q 019349          247 SSGSLHVFS  255 (342)
Q Consensus       247 ~dg~i~vwd  255 (342)
                      .+|+|.-++
T Consensus       311 ~~G~i~~~~  319 (327)
T 2xbg_A          311 QKGILLRYV  319 (327)
T ss_dssp             STTEEEEEC
T ss_pred             CCceEEEEc
Confidence            889877765

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.47  E-value=0.34  Score=42.75  Aligned_cols=137  Identities=18%  Similarity=0.137  Sum_probs=75.9

Q ss_pred             CCeEEEEECCC--Ccee-eEEeCC------CCCceEEEEeeCCCc-cEEEEeCC-CCccEEEEEEccCCc-e---eEEEe
Q 019349          112 REKTYIYDANT--LAIL-DTIDTV------PNLKGLCAFSPSLNA-CFLAVPAS-TTKGSVLVYNVMELH-S---HCEID  176 (342)
Q Consensus       112 d~~i~i~d~~~--~~~~-~~~~~~------~~~~~~~~~~~~~~~-~~l~~~~~-~~~g~i~iwd~~~~~-~---~~~~~  176 (342)
                      ++.|.++|..+  ++.. -.+...      .++.++.... +.++ .+|..+.. ..+.+|.+|++.... .   +.++.
T Consensus        82 ~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~-d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~  160 (355)
T 3sre_A           82 SGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFI-DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIR  160 (355)
T ss_dssp             CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEE-CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEEC
T ss_pred             CCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEE-CCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccc
Confidence            67899999873  3321 122211      1333433322 2223 23433322 135788898876532 2   23333


Q ss_pred             cc-cCCeeEEEECCCCCEEEEEeC-----------------CCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCc
Q 019349          177 AH-QAPLAAIVLSSNGMYIATASE-----------------QGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  238 (342)
Q Consensus       177 ~h-~~~v~~i~~s~dg~~lat~s~-----------------dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (342)
                      +. -...+.+++.++|++.++...                 .|.   ||.+..++ +..+..+  -..-+.++||||++ 
T Consensus       161 g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~---vyr~d~~~-~~~~~~~--l~~pNGia~spDg~-  233 (355)
T 3sre_A          161 HKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSF---VTYYSPND-VRVVAEG--FDFANGINISPDGK-  233 (355)
T ss_dssp             CTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEE---EEEECTTC-CEEEEEE--ESSEEEEEECTTSS-
T ss_pred             cCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccE---EEEEECCe-EEEeecC--CcccCcceECCCCC-
Confidence            32 245789999999998888651                 133   34333332 2222111  12368899999997 


Q ss_pred             ccEEEEE-eCCCcEEEEecCC
Q 019349          239 QDILVAT-SSSGSLHVFSPGF  258 (342)
Q Consensus       239 ~~~l~~~-s~dg~i~vwd~~~  258 (342)
                        .|..+ +..+.|+.|+++.
T Consensus       234 --~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          234 --YVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             --EEEEEEGGGTEEEEEEECT
T ss_pred             --EEEEEeCCCCeEEEEEECC
Confidence              55554 5678999999874

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.43  E-value=0.0089  Score=58.16  Aligned_cols=176  Identities=9%  Similarity=-0.008  Sum_probs=95.4

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcC--CeEEEEE--CCeEEEEECCC----CceeeEEeCC-CCCceEEEEeeC
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANT----LAILDTIDTV-PNLKGLCAFSPS  144 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~----~~~~~~~~~~-~~~~~~~~~~~~  144 (342)
                      .+.|+..++.+.+....+.....+.++++++  ..++++.  .+.|+.+++..    ......+... ..+.   .++.+
T Consensus       385 ~~~I~~id~~~~~~~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~---glavD  461 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD---GLAVD  461 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC---CEECC
T ss_pred             ccceEEEeCCCCcceeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc---eEEEE
Confidence            4577888887766544443344566778875  3344443  46888888865    1111111111 1222   23333


Q ss_pred             CCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe-CC-CcEEEEEEcCCCeeEEEeccCc
Q 019349          145 LNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS-EQ-GTIIRVFLVSEATKSYSFRRGT  222 (342)
Q Consensus       145 ~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s-~d-g~~irlwd~~~~~~~~~~~~~~  222 (342)
                      +.+..|..+.. ..+.|.++++........+.........|+++|++.+|..+. .. ++ |..+++. |.....+... 
T Consensus       462 ~~~g~LY~tD~-~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~-I~~~~~d-G~~~~~l~~~-  537 (699)
T 1n7d_A          462 WIHSNIYWTDS-VLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-  537 (699)
T ss_dssp             CSSSBCEECCT-TTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCC-EEBCCSS-SCCCCEESCS-
T ss_pred             eeCCcEEEEec-cCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCe-EEEEeCC-CCCeeEEEeC-
Confidence            32223434433 467899999876543333333334568899999655444433 22 45 4566654 3322222111 


Q ss_pred             CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          223 YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       223 ~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      .......|+|+|++.  .++++-+..+.|.+++++.
T Consensus       538 ~l~~PnGlavd~~~~--~LY~aD~~~~~I~~~d~dG  571 (699)
T 1n7d_A          538 NIQWPNGITLDLLSG--RLYWVDSKLHSISSIDVNG  571 (699)
T ss_dssp             SCSSCCCEEECTTTC--CEEEEETTTTEEEEECSSS
T ss_pred             CCCCccEEEEeccCC--EEEEEecCCCeEEEEccCC
Confidence            112356799998765  1555666778899999864

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.26  E-value=0.46  Score=40.50  Aligned_cols=225  Identities=12%  Similarity=0.084  Sum_probs=108.7

Q ss_pred             CEEEEEcC---CcEEEEeCCCCcEEEEEee--C--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEe
Q 019349           20 SGFALSTK---DGFKIFDSSTGRLCYERAV--G--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELN   92 (342)
Q Consensus        20 ~~la~g~~---~g~~v~d~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~   92 (342)
                      ..++.|+.   +.+.+||+.+.+-......  .  ....+.  . .+.+.+.||..  ....+.+.++|..+++....-.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~--~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--W-DNVVYILGGSQ--LFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--E-TTEEEEECCBS--SSBCCEEEEEETTTTEEEEEEC
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--E-CCEEEEEeCCC--CCCcceEEEEeCCCCeEEECCC
Confidence            34556654   3478899887754321110  1  111121  2 34555555532  1234778999999887554333


Q ss_pred             cCC--ceEEEEEcCCeEEEEE--C------CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC-----
Q 019349           93 FLT--SILAVRLNKKRLVIVL--R------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT-----  157 (342)
Q Consensus        93 ~~~--~v~~i~~~~~~~~~~~--d------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----  157 (342)
                      .+.  .-.++....+.+++..  +      +.+.+||..+.+-...-..+.......+...  ++.+++++|...     
T Consensus        88 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~  165 (306)
T 3ii7_A           88 PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSG  165 (306)
T ss_dssp             CSSCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTC
T ss_pred             CCccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcc
Confidence            322  1122333355566654  2      3688999887642211111111112222222  345556665211     


Q ss_pred             --ccEEEEEEccCCce--eEEEecccCCeeEEEECCCCCEEEEEeCCCc----EEEEEEcCCCeeEEEeccCcC-ceeEE
Q 019349          158 --KGSVLVYNVMELHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQGT----IIRVFLVSEATKSYSFRRGTY-PSTIF  228 (342)
Q Consensus       158 --~g~i~iwd~~~~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~----~irlwd~~~~~~~~~~~~~~~-~~~v~  228 (342)
                        ...+.+||+.+.+=  +..+......-.++.+  ++++++.|+.++.    .+.+||+.+.+-. .+..-.. .....
T Consensus       166 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~  242 (306)
T 3ii7_A          166 RVLNSCEVYDPATETWTELCPMIEARKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWK-MVSPMPWKGVTVK  242 (306)
T ss_dssp             EECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEE-ECCCCSCCBSCCE
T ss_pred             cccceEEEeCCCCCeEEECCCccchhhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEE-ECCCCCCCcccee
Confidence              24588999887642  2112111111122223  6677777765431    1468998876532 1111111 11122


Q ss_pred             EEEEecCCCcccEEEEEeCC-----CcEEEEecCCC
Q 019349          229 SLSFGQSMQFQDILVATSSS-----GSLHVFSPGFA  259 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~s~d-----g~i~vwd~~~~  259 (342)
                      ++.+  +++   +++.|+.+     +.+.+||+++.
T Consensus       243 ~~~~--~~~---i~v~GG~~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          243 CAAV--GSI---VYVLAGFQGVGRLGHILEYNTETD  273 (306)
T ss_dssp             EEEE--TTE---EEEEECBCSSSBCCEEEEEETTTT
T ss_pred             EEEE--CCE---EEEEeCcCCCeeeeeEEEEcCCCC
Confidence            2222  566   77777744     46788887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.22  E-value=0.48  Score=40.31  Aligned_cols=228  Identities=14%  Similarity=0.096  Sum_probs=108.6

Q ss_pred             CCCEEEEEcC-----CcEEEEeCCCCcEEEEEee--C--CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE
Q 019349           18 DNSGFALSTK-----DGFKIFDSSTGRLCYERAV--G--AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (342)
Q Consensus        18 d~~~la~g~~-----~g~~v~d~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~   88 (342)
                      ++..++.|+.     +.+..||+.+.+.......  .  ....+.  . .+.+.+.||.. ....-+.+.++|..+++..
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~-~~~~~~~~~~~d~~~~~W~   90 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY--M-AGLVFAVGGFN-GSLRVRTVDSYDPVKDQWT   90 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--E-TTEEEEESCBC-SSSBCCCEEEEETTTTEEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE--E-CCEEEEEeCcC-CCccccceEEECCCCCcee
Confidence            3445556653     2367889887653322111  1  111121  1 45555665521 1112367899999887654


Q ss_pred             EEEecCC--ceEEEEEcCCeEEEEE--C-----CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC--
Q 019349           89 RELNFLT--SILAVRLNKKRLVIVL--R-----EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT--  157 (342)
Q Consensus        89 ~~~~~~~--~v~~i~~~~~~~~~~~--d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--  157 (342)
                      ..-..+.  .-.++....+.+++..  +     +.+.+||+.+.+-...-..+.......+...  ++..++.+|.+.  
T Consensus        91 ~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~  168 (302)
T 2xn4_A           91 SVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVAS  168 (302)
T ss_dssp             EECCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTT
T ss_pred             eCCCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCC
Confidence            4332222  1122333355555554  2     3688899877642211111111112222222  344666665311  


Q ss_pred             ---ccEEEEEEccCCce--eEEEecccCCeeEEEECCCCCEEEEEeCCC-----cEEEEEEcCCCeeEEEeccCcCceeE
Q 019349          158 ---KGSVLVYNVMELHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQG-----TIIRVFLVSEATKSYSFRRGTYPSTI  227 (342)
Q Consensus       158 ---~g~i~iwd~~~~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~dg-----~~irlwd~~~~~~~~~~~~~~~~~~v  227 (342)
                         ...+.+||+.+.+=  +..+........++.+  ++++++.|+.++     . +.+||..+.+-.. +.....+..-
T Consensus       169 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-~~~yd~~~~~W~~-~~~~~~~r~~  244 (302)
T 2xn4_A          169 RQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKS-VEVYDPTTNAWRQ-VADMNMCRRN  244 (302)
T ss_dssp             TEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCC-EEEEETTTTEEEE-ECCCSSCCBS
T ss_pred             CccccEEEEEeCCCCcEEECCCCccccccccEEEE--CCEEEEECCCCCCcccce-EEEEeCCCCCEee-CCCCCCcccc
Confidence               23588999877642  2122211111222333  577888887643     3 4689998765322 2111111011


Q ss_pred             EEEEEecCCCcccEEEEEeCCC-----cEEEEecCCC
Q 019349          228 FSLSFGQSMQFQDILVATSSSG-----SLHVFSPGFA  259 (342)
Q Consensus       228 ~~l~fs~d~~~~~~l~~~s~dg-----~i~vwd~~~~  259 (342)
                      .+++. -+++   +++.|+.++     .+.+||+++.
T Consensus       245 ~~~~~-~~~~---i~v~GG~~~~~~~~~v~~yd~~~~  277 (302)
T 2xn4_A          245 AGVCA-VNGL---LYVVGGDDGSCNLASVEYYNPTTD  277 (302)
T ss_dssp             CEEEE-ETTE---EEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CeEEE-ECCE---EEEECCcCCCcccccEEEEcCCCC
Confidence            11222 2566   777776553     4888887654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.04  E-value=0.26  Score=51.13  Aligned_cols=221  Identities=12%  Similarity=0.172  Sum_probs=117.6

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      .+.|.|.|+.++..+...  +-..-+.-.+|...+++.  ..++.|||+++.+.++......   .++-..|-.+. .|+
T Consensus        47 ~~~vvIidl~~~~~~~rr--pi~AdsAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~~e---~VvfWkWis~~-~l~  120 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRR--PISADSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN-TVA  120 (1630)
T ss_pred             CceEEEEECCCCCCcccc--cccchhhccCCCcceEEEecCCeEEEeehHHhhhhcccccCC---CceEEEecCCC-eeE
Confidence            458999999887655322  112223334666656655  6799999999887777765533   35445553322 444


Q ss_pred             EeCCCCccEEEEEEccC-CceeEEEecc----cCCeeEEEECCCCCEEEEEeC-------CCcEEEEEEcCCCeeEEEec
Q 019349          152 VPASTTKGSVLVYNVME-LHSHCEIDAH----QAPLAAIVLSSNGMYIATASE-------QGTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~-~~~~~~~~~h----~~~v~~i~~s~dg~~lat~s~-------dg~~irlwd~~~~~~~~~~~  219 (342)
                      ...   +..|.-|++.. ..++..+..|    ...|..-..+++.++++..|-       .|. +.++.+..+.. ..+.
T Consensus       121 lVT---~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~-mQLyS~er~~s-Q~ie  195 (1630)
T 1xi4_A          121 LVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA-MQLYSVDRKVS-QPIE  195 (1630)
T ss_pred             EEc---CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccce-eeeeecccccc-hhhh
Confidence            443   45799999963 3455555555    346777778899998775432       354 57888765431 1111


Q ss_pred             cCcCceeEEEEEE--ec-CCCcccEEEEEeC---CCcEEEEecCCCCCCCCCCCcccccccccccccccccccc--ccce
Q 019349          220 RGTYPSTIFSLSF--GQ-SMQFQDILVATSS---SGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPA--DHHV  291 (342)
Q Consensus       220 ~~~~~~~v~~l~f--s~-d~~~~~~l~~~s~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  291 (342)
                       | |.+.-..+.+  ++ ...   +++.+..   .+.+||-++..+.....         .+.-..+..-+.|+  +...
T Consensus       196 -g-ha~~F~~~~~~~~~~~~~---l~~f~~~~~~g~kLhi~Ei~~~~~~~~---------~f~kk~~~~~~~~~~~~Dfp  261 (1630)
T 1xi4_A          196 -G-HAASFAQFKMEGNAEEST---LFCFAVRGQAGGKLHIIEVGTPPTGNQ---------PFPKKAVDVFFPPEAQNDFP  261 (1630)
T ss_pred             -H-hHhhhheeccCCCCCCce---EEEEEEecCCCceEEEEecCCCccCCC---------CCccccccccCCcccccCcc
Confidence             1 0110000111  01 111   2222211   26899999976521110         01111111112221  1111


Q ss_pred             eeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          292 LRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       292 ~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      .  .+...++-..++..+.-|.+++|++.+
T Consensus       262 v--~~~vs~k~g~iy~itk~G~~~~~d~~t  289 (1630)
T 1xi4_A          262 V--AMQISEKHDVVFLITKYGYIHLYDLET  289 (1630)
T ss_pred             e--EEEeccccCEEEEEecCceEEEEeccc
Confidence            1  122244557899999999999998865

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=96.00  E-value=1.1  Score=42.65  Aligned_cols=225  Identities=8%  Similarity=0.014  Sum_probs=120.1

Q ss_pred             EEEEEcCCcEEEEeCCCCc--EEEE-EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE-EEEEecC-C
Q 019349           21 GFALSTKDGFKIFDSSTGR--LCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA-LRELNFL-T   95 (342)
Q Consensus        21 ~la~g~~~g~~v~d~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~-~~~~~~~-~   95 (342)
                      +|.-+..+.+++.+++...  .... ........+++.+..+.+.++..      ..+.|..+++..... ...+... .
T Consensus        11 ~~~~~~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~------~~~~I~r~~~~g~~~~~~v~~~~~~   84 (619)
T 3s94_A           11 LLLYANRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDV------SEEAIKRTEFNKTESVQNVVVSGLL   84 (619)
T ss_dssp             CEEEECSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEET------TTTEEEEEEC-----CEEEECSSCS
T ss_pred             eEEEeccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEEC------CCCeEEEEEccCCCceEEEEeCCCC
Confidence            4555667778888887542  1111 12234445666666676666654      367888888865432 2222222 3


Q ss_pred             ceEEEEEcC--CeEEEEE--CCeEEEEECCCCceeeEEe--CCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC
Q 019349           96 SILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTID--TVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL  169 (342)
Q Consensus        96 ~v~~i~~~~--~~~~~~~--d~~i~i~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~  169 (342)
                      ...+++++.  ..++++.  .+.|.+.++.... ...+.  ....|.   +++.+|.+..|..+.....+.|...++...
T Consensus        85 ~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~-~~~l~~~~l~~P~---~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~  160 (619)
T 3s94_A           85 SPDGLACDWLGEKLYWTDSETNRIEVSNLDGSL-RKVLFWQELDQPR---AIALDPSSGFMYWTDWGEVPKIERAGMDGS  160 (619)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECSSCSCCC---CEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CcCeEEEEecCCEEEEEeCCCCEEEEEECCCCC-EEEEEeCCCCCCc---eEEEecCCCeEEEeccCCCCEEEEEECCCC
Confidence            677888875  4555555  5689999986543 22232  122233   233444333444443213467777776543


Q ss_pred             ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCC
Q 019349          170 HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSG  249 (342)
Q Consensus       170 ~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg  249 (342)
                      .........-...+.|++++++..|..+......|...|+.... ...+..+. .....+|++..+ .   ++.+-...+
T Consensus       161 ~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~-~~~~~~~~-~~~P~gi~~~~~-~---ly~td~~~~  234 (619)
T 3s94_A          161 SRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTN-RQAVVKGS-LPHPFALTLFED-I---LYWTDWSTH  234 (619)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCE-EC----------CCCEEESSS-E---EEEECTTTC
T ss_pred             ceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCc-cEEEEeCC-CCCceEEEEeCC-E---EEEecCCCC
Confidence            33322333345678999999877777776544446778875433 22222211 122356777655 4   566656678


Q ss_pred             cEEEEecCCCCC
Q 019349          250 SLHVFSPGFAIN  261 (342)
Q Consensus       250 ~i~vwd~~~~~~  261 (342)
                      .|...|..+++.
T Consensus       235 ~V~~~d~~tg~~  246 (619)
T 3s94_A          235 SILACNKYTGEG  246 (619)
T ss_dssp             SEEEEESSSCCC
T ss_pred             EEEEEECCCCcc
Confidence            899998766543

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.98  E-value=0.66  Score=39.77  Aligned_cols=186  Identities=11%  Similarity=0.140  Sum_probs=89.2

Q ss_pred             EEEEcCCcEEEEeCCCCcEEEEEee---CCEEEEEEcCCCCeEEEEcCC-----CCCCCCCCeEEEEECCCCcEEEEEec
Q 019349           22 FALSTKDGFKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAG-----EQPSLSPRRLCLFNTTTGTALRELNF   93 (342)
Q Consensus        22 la~g~~~g~~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g-----~~~~~~d~~i~iwd~~~~~~~~~~~~   93 (342)
                      ++.|+ +.+..||+.+.+-....-.   ..........+...+ +.||.     .......+.+..+|..+++....-..
T Consensus         8 ~~~GG-~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iy-v~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~   85 (315)
T 4asc_A            8 FMISE-EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVF-VAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL   85 (315)
T ss_dssp             EEEET-TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEE-EEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB
T ss_pred             EEEcC-CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEE-EEcCcccCCCCCccccccceEEecCCCCeEEECCCC
Confidence            44555 6688999988865432111   122223333444444 44441     11011123478899988765432222


Q ss_pred             CCc--eEEEEEcCCeEEEEEC----------CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC----
Q 019349           94 LTS--ILAVRLNKKRLVIVLR----------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT----  157 (342)
Q Consensus        94 ~~~--v~~i~~~~~~~~~~~d----------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  157 (342)
                      +.+  -.++....+.+++...          +.+.+||..+.+=...-..+.......+...  ++..++.+|...    
T Consensus        86 p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~  163 (315)
T 4asc_A           86 PSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSH--MDLVYVIGGKGSDRKC  163 (315)
T ss_dssp             SSCEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCTTSCB
T ss_pred             CcchhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEE--CCEEEEEeCCCCCCcc
Confidence            221  1223334555655542          3588999877531111011111122222232  344666666311    


Q ss_pred             ccEEEEEEccCCce--eEEEecccCCeeEEEECCCCCEEEEEeCCCc----EEEEEEcCCCe
Q 019349          158 KGSVLVYNVMELHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQGT----IIRVFLVSEAT  213 (342)
Q Consensus       158 ~g~i~iwd~~~~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~----~irlwd~~~~~  213 (342)
                      -..+.+||..+.+=  +..+......-.++.+  +++.++.|+.++.    .+.+||+.+.+
T Consensus       164 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  223 (315)
T 4asc_A          164 LNKMCVYDPKKFEWKELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNK  223 (315)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTE
T ss_pred             cceEEEEeCCCCeEEECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCe
Confidence            24688999877642  2112211111122223  6778888876543    24688988765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=95.87  E-value=1.3  Score=42.31  Aligned_cols=225  Identities=8%  Similarity=-0.043  Sum_probs=131.6

Q ss_pred             CEEEEEcCCcEEEEeCCCCcEEEEEe---eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC-C
Q 019349           20 SGFALSTKDGFKIFDSSTGRLCYERA---VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL-T   95 (342)
Q Consensus        20 ~~la~g~~~g~~v~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~-~   95 (342)
                      .+|+.+....++..++++........   ......+++....+.+..+..      ..+.|..+++........+... .
T Consensus         7 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~------~~~~I~r~~~~g~~~~~v~~~g~~   80 (628)
T 4a0p_A            7 AFLLFSRRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDI------SLKTISRAFMNGSALEHVVEFGLD   80 (628)
T ss_dssp             CEEEEEETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEET------TTTEEEEEETTSCSCEEEECSSCS
T ss_pred             cEEEEEeCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEEC------CCCeEEEEECCCCCcEEEEeCCCC
Confidence            35666677778888887664332221   134445666666677666654      3688988888654433333322 2


Q ss_pred             ceEEEEEc--CCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce
Q 019349           96 SILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS  171 (342)
Q Consensus        96 ~v~~i~~~--~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~  171 (342)
                      ...+++++  ...++++.  .+.|.+.++.... ...+.. .......+++.+|....|..+.....+.|...++.....
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~-~~~l~~-~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~  158 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQH-RQVLVW-KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER  158 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTT-CEEEEC-SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCc-EEEEEe-CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce
Confidence            45666665  45566665  4689999986542 222221 111233455555543345444321357888888765443


Q ss_pred             eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcE
Q 019349          172 HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSL  251 (342)
Q Consensus       172 ~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i  251 (342)
                      ...+ ..-...+.|++++++..|..+......|...|+..... ..+...  ......|++.. +.   ++.+-...+.|
T Consensus       159 ~~l~-~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~---ly~tD~~~~~I  230 (628)
T 4a0p_A          159 TTLV-PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DY---IYWTDWSRRSI  230 (628)
T ss_dssp             EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TE---EEEEETTTTEE
T ss_pred             EEEE-CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CE---EEEecCCCCEE
Confidence            3223 33456789999998888887776655578888864433 223221  22356788865 34   55555667888


Q ss_pred             EEEecCCCC
Q 019349          252 HVFSPGFAI  260 (342)
Q Consensus       252 ~vwd~~~~~  260 (342)
                      ...|..+++
T Consensus       231 ~~~dk~tg~  239 (628)
T 4a0p_A          231 ERANKTSGQ  239 (628)
T ss_dssp             EEEETTTCC
T ss_pred             EEEECCCCC
Confidence            888865544

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=95.85  E-value=2  Score=44.22  Aligned_cols=138  Identities=10%  Similarity=0.086  Sum_probs=88.2

Q ss_pred             CCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEECCeEEEEECCCCcee--eEEeCCCCCceEEEEeeCCC---
Q 019349           74 PRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVLREKTYIYDANTLAIL--DTIDTVPNLKGLCAFSPSLN---  146 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~---  146 (342)
                      .+.|++.+...+..+.++..+.  .|...+.+...++++.++.+.++++.++++.  ...+.   +..+.|++..+.   
T Consensus       491 ~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~~~vvva~g~~l~~fel~~~~L~~~~~~~l---~~evscl~i~~~~~~  567 (1158)
T 3ei3_A          491 SASVRLVSQEPKALVSEWKEPQAKNISVASCNSSQVVVAVGRALYYLQIHPQELRQISHTEM---EHEVACLDITPLGDS  567 (1158)
T ss_dssp             SSCEEEEESSSCCEEEEECCTTCCCCCEEEECSSEEEEEETTEEEEEEEETTEEEEEEEEEC---SSCEEEEECCCCSSS
T ss_pred             cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCCCEEEEEECCEEEEEEeeCCceeeecccCC---CCceEEEEeecCCCC
Confidence            4678899887777777777653  6888888888888887778888888765432  22222   234666665432   


Q ss_pred             ---ccEEEEeCCCCccEEEEEEccCCceeEEEec-ccCCeeEEEEC--CCCCEEEEEeCCCcEEE-EEEcCCCeeE
Q 019349          147 ---ACFLAVPASTTKGSVLVYNVMELHSHCEIDA-HQAPLAAIVLS--SNGMYIATASEQGTIIR-VFLVSEATKS  215 (342)
Q Consensus       147 ---~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~-h~~~v~~i~~s--~dg~~lat~s~dg~~ir-lwd~~~~~~~  215 (342)
                         ..++|.+.. .|++|+|+.+.+.+.+....- -.....+|.+.  ....+|..|-.||.+++ .+|..+|+..
T Consensus       568 ~~~s~~~aVg~~-~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~  642 (1158)
T 3ei3_A          568 NGLSPLCAIGLW-TDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLS  642 (1158)
T ss_dssp             TTCCSEEEEEET-TTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEE
T ss_pred             cccccEEEEEEC-CCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccc
Confidence               357776653 489999999988776543321 11234444332  23467889999997654 3455566543

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=95.76  E-value=0.86  Score=39.40  Aligned_cols=198  Identities=9%  Similarity=-0.088  Sum_probs=105.4

Q ss_pred             eEEEEEcCCCCEEEEEc-CC-cEEEEeCCCCc---EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349           10 VFFVSFNQDNSGFALST-KD-GFKIFDSSTGR---LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~-~~-g~~v~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      +..++|++.+..|.... .. .+..++++...   .+.........-+.+.+....+.++..      ..+.|.+.++..
T Consensus        37 ~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~------~~~~I~~~~~dG  110 (318)
T 3sov_A           37 AAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDS------ETNRIEVSNLDG  110 (318)
T ss_dssp             EEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEET------TTTEEEEEETTS
T ss_pred             cEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEEC------CCCEEEEEECCC
Confidence            55788888666665443 33 36777776552   122221122223444444445544443      257888998765


Q ss_pred             CcEEEEE-ecCCceEEEEEcCC--eEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349           85 GTALREL-NFLTSILAVRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (342)
Q Consensus        85 ~~~~~~~-~~~~~v~~i~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  158 (342)
                      ......+ .......++++++.  .++.+.   .+.|+.+++... ....+.. ..-.....++.++++..|..+.. ..
T Consensus       111 ~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~-~~~~~~~-~~l~~Pnglavd~~~~~lY~aD~-~~  187 (318)
T 3sov_A          111 SLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGS-SRFIIIN-SEIYWPNGLTLDYEEQKLYWADA-KL  187 (318)
T ss_dssp             CSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSC-SCEEEEC-SSCSCEEEEEEETTTTEEEEEET-TT
T ss_pred             CcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCC-CeEEEEE-CCCCCccEEEEeccCCEEEEEEC-CC
Confidence            4322222 22235688888763  444444   247888887532 2222211 11122345566665556665554 57


Q ss_pred             cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349          159 GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF  218 (342)
Q Consensus       159 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~  218 (342)
                      +.|..+|+........+.........|++.. +..+.+-...++ |..+|..+|+....+
T Consensus       188 ~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~-V~~~~~~~G~~~~~i  245 (318)
T 3sov_A          188 NFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHS-ILACNKYTGEGLREI  245 (318)
T ss_dssp             TEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTE-EEEEETTTCCSCEEE
T ss_pred             CEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCe-EEEEECCCCCceEEE
Confidence            8999999864333222332334456777753 344445444444 567888777655544

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=95.73  E-value=0.98  Score=39.78  Aligned_cols=172  Identities=13%  Similarity=0.112  Sum_probs=92.0

Q ss_pred             CCCeEEEEECCC--CcEEEEEecC--------CceEEEEEcC----C-eEEEEE----CCeEEEEECCCC-c---eeeEE
Q 019349           73 SPRRLCLFNTTT--GTALRELNFL--------TSILAVRLNK----K-RLVIVL----REKTYIYDANTL-A---ILDTI  129 (342)
Q Consensus        73 ~d~~i~iwd~~~--~~~~~~~~~~--------~~v~~i~~~~----~-~~~~~~----d~~i~i~d~~~~-~---~~~~~  129 (342)
                      .++.|.++|..+  ++. ..+...        -....|.+.+    . +++++.    +.+|.+|++... +   .+.++
T Consensus        81 ~~G~I~~~d~~~~~~~~-~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~  159 (355)
T 3sre_A           81 KSGKILLMDLNEKEPAV-SELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTI  159 (355)
T ss_dssp             -CCEEEEEETTSSSCCE-EECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCeEEEEecCCCCCce-EEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEecc
Confidence            478899999873  332 222211        2567777643    1 355554    347888777542 2   23333


Q ss_pred             eCCCCCceEEEEeeCCCccEEEEeCC---------------CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEE
Q 019349          130 DTVPNLKGLCAFSPSLNACFLAVPAS---------------TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYI  194 (342)
Q Consensus       130 ~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~l  194 (342)
                      ... .-.....+...+++.+.++...               ...|.|.-+|..  + +..+...-..-+.|+|||||+.|
T Consensus       160 ~g~-~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~-~~~~~~~l~~pNGia~spDg~~l  235 (355)
T 3sre_A          160 RHK-LLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--D-VRVVAEGFDFANGINISPDGKYV  235 (355)
T ss_dssp             CCT-TCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--C-CEEEEEEESSEEEEEECTTSSEE
T ss_pred             ccC-CCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--e-EEEeecCCcccCcceECCCCCEE
Confidence            321 1122334444456666655321               013556666653  2 22222223456899999999988


Q ss_pred             EEEeCCCcEEEEEEcCC-Cee--EEEeccCcCceeEEEEEEec-CCCcccEEEEEeCC-CcEEEEe
Q 019349          195 ATASEQGTIIRVFLVSE-ATK--SYSFRRGTYPSTIFSLSFGQ-SMQFQDILVATSSS-GSLHVFS  255 (342)
Q Consensus       195 at~s~dg~~irlwd~~~-~~~--~~~~~~~~~~~~v~~l~fs~-d~~~~~~l~~~s~d-g~i~vwd  255 (342)
                      ..+......|..|++.. |+.  ...+.   .+...-.+++.+ +|.   +.+++..+ +.|..|+
T Consensus       236 Yvadt~~~~I~~~~~~~~g~l~~~~~~~---~~g~PDGi~vD~e~G~---lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHANWTLTPLRVLS---FDTLVDNISVDPVTGD---LWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEE---CSSEEEEEEECTTTCC---EEEEEESCHHHHHSCC
T ss_pred             EEEeCCCCeEEEEEECCCCcEecCEEEe---CCCCCceEEEeCCCCc---EEEEecCCceEEEEEC
Confidence            88765444467888863 432  12221   133467788888 587   66655433 3444444

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.72  E-value=0.85  Score=38.95  Aligned_cols=232  Identities=12%  Similarity=0.071  Sum_probs=109.3

Q ss_pred             EcCCCCEEEEEcC-----CcEEEEeCCCCcEEEEEee--C--CEEEEEEcCCCCeEEEEcCCC---CCCCCCCeEEEEEC
Q 019349           15 FNQDNSGFALSTK-----DGFKIFDSSTGRLCYERAV--G--AFSIVEMLYSSSLLAIVGAGE---QPSLSPRRLCLFNT   82 (342)
Q Consensus        15 fs~d~~~la~g~~-----~g~~v~d~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~g~---~~~~~d~~i~iwd~   82 (342)
                      ..-++..++.|+.     +.+.+||+.+.+.......  .  ....+.  . .+.+.+.||..   ......+.+.++|.
T Consensus        21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~   97 (308)
T 1zgk_A           21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV--V-GGLLYAVGGRNNSPDGNTDSSALDCYNP   97 (308)
T ss_dssp             CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--E-TTEEEEECCEEEETTEEEECCCEEEEET
T ss_pred             cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE--E-CCEEEEECCCcCCCCCCeecceEEEECC
Confidence            3345666666662     2367889887753321111  0  111121  1 34555665520   11112357889999


Q ss_pred             CCCcEEEEEecCC--ceEEEEEcCCeEEEEE-------CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           83 TTGTALRELNFLT--SILAVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        83 ~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      .+++....-..+.  .-.++....+.+++..       .+.+.+||+.+.+-...-..+.......+...  ++.+++++
T Consensus        98 ~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~G  175 (308)
T 1zgk_A           98 MTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVG  175 (308)
T ss_dssp             TTTEEEECCCCSSCCBTCEEEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEEC
T ss_pred             CCCeEeECCCCCcCccccEEEEECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEe
Confidence            8876443222221  1122233355555553       24688899877532211111111112222222  34566666


Q ss_pred             CCCC---ccEEEEEEccCCcee--EEEecccCCeeEEEECCCCCEEEEEeCC-----CcEEEEEEcCCCeeEEEeccCcC
Q 019349          154 ASTT---KGSVLVYNVMELHSH--CEIDAHQAPLAAIVLSSNGMYIATASEQ-----GTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       154 ~~~~---~g~i~iwd~~~~~~~--~~~~~h~~~v~~i~~s~dg~~lat~s~d-----g~~irlwd~~~~~~~~~~~~~~~  223 (342)
                      |.+.   ...+.+||+.+.+=.  ..+......-.++.+  +++.++.|+.+     .. +.+||+.+.+-.. +.....
T Consensus       176 G~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~-v~~yd~~~~~W~~-~~~~p~  251 (308)
T 1zgk_A          176 GFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNS-VERYDVETETWTF-VAPMKH  251 (308)
T ss_dssp             CBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCC-EEEEETTTTEEEE-CCCCSS
T ss_pred             CCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccce-EEEEeCCCCcEEE-CCCCCC
Confidence            6321   245889998776421  112111111223333  67778887754     23 4689998765321 211111


Q ss_pred             ceeEEEEEEecCCCcccEEEEEeCC-----CcEEEEecCCC
Q 019349          224 PSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGFA  259 (342)
Q Consensus       224 ~~~v~~l~fs~d~~~~~~l~~~s~d-----g~i~vwd~~~~  259 (342)
                      +..-.+++. -+++   +++.|+.+     ..+.+||+++.
T Consensus       252 ~r~~~~~~~-~~~~---i~v~GG~~~~~~~~~v~~yd~~~~  288 (308)
T 1zgk_A          252 RRSALGITV-HQGR---IYVLGGYDGHTFLDSVECYDPDTD  288 (308)
T ss_dssp             CCBSCEEEE-ETTE---EEEECCBCSSCBCCEEEEEETTTT
T ss_pred             CccceEEEE-ECCE---EEEEcCcCCCcccceEEEEcCCCC
Confidence            111112222 2566   67777643     35778887643

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.46  E-value=0.13  Score=45.10  Aligned_cols=112  Identities=16%  Similarity=0.155  Sum_probs=67.0

Q ss_pred             EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEe-eC--CCccEEEEeCCCCccEEEEEEccCCceeEEEec----c
Q 019349          107 LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFS-PS--LNACFLAVPASTTKGSVLVYNVMELHSHCEIDA----H  178 (342)
Q Consensus       107 ~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~----h  178 (342)
                      +++.+ |+.++-+|..+|+.+.+++... ........ +.  .++..++.... .||.|..+|..++.....+..    .
T Consensus        13 V~v~t~dG~l~Ald~~tG~~~W~~~~~~-~~p~~~~~~~~~~~~~~~~vv~p~-~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           13 LIAADVEGGLHAVDRRNGHIIWSIEPEN-FQPLIEIQEPSRLETYETLIIEPF-GDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEETTSCEEEEETTTTEEEEEECGGG-SCCSEECCCSCTTTSSEEEEECCS-TTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             EEEEeCCCeEEEEECCCCcEEEEecCCc-cCCcEEecCCccccCCcEEEEEEC-CCCEEEEEECCCCcEEeeecccccee
Confidence            44445 8999999999999998886541 01111111 10  12233333212 489999999888755433321    2


Q ss_pred             cCCeeE---EEE-C----CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC
Q 019349          179 QAPLAA---IVL-S----SNGMYIATASEQGTIIRVFLVSEATKSYSFRRG  221 (342)
Q Consensus       179 ~~~v~~---i~~-s----~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~  221 (342)
                      .+|+..   ..+ .    .++..+.+|+.+|++ .-.|+++|+.+.++..+
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l-~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIM-YTINMLNGEIISAFGPG  140 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEE-EEEETTTCCEEEEESTT
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEE-EEEECCCCcEEEEEecC
Confidence            223221   001 0    145678899999986 58999999999998654

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=95.39  E-value=2  Score=41.00  Aligned_cols=145  Identities=8%  Similarity=-0.041  Sum_probs=80.9

Q ss_pred             EEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEE
Q 019349          107 LVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIV  186 (342)
Q Consensus       107 ~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~  186 (342)
                      ++++..+.|+..++...................++++++.+..|..+.. ..+.|+.+++........+...-.....|+
T Consensus       320 Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~-~~~~I~r~~~~g~~~~~v~~~~~~~p~GlA  398 (619)
T 3s94_A          320 LLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDD-EVRAIRRSFIDGSGSQFVVTAQIAHPDGIA  398 (619)
T ss_dssp             EEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEET-TTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeC-CCCeEEEEEcCCCccEEEEECCCCCcCceE
Confidence            3344456777777765432111111112234667777765555555543 468899999875443333333335678899


Q ss_pred             ECCCCCEEEEE-eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeC--CCcEEEEecCC
Q 019349          187 LSSNGMYIATA-SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS--SGSLHVFSPGF  258 (342)
Q Consensus       187 ~s~dg~~lat~-s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~--dg~i~vwd~~~  258 (342)
                      +.+.+..|..+ +..++ |.+.++... ....+... .-....+|++.|...   +|..+..  .+.|...+++.
T Consensus       399 vD~~~~~lY~tD~~~~~-I~v~~~~G~-~~~~l~~~-~l~~P~~iavdp~~G---~ly~tD~g~~~~I~r~~~dG  467 (619)
T 3s94_A          399 VDWVARNLYWTDTGTDR-IEVTRLNGT-MRKILISE-DLEEPRAIVLDPMVG---YMYWTDWGEIPKIERAALDG  467 (619)
T ss_dssp             EETTTTEEEEEETTTTE-EEEEETTSC-SCEEEECT-TCCSEEEEEEETTTT---EEEEEECSSSCEEEEEETTS
T ss_pred             EecccCcEEEEeCCCCc-EEEEeCCCC-eEEEEEEC-CCCCeeeEEEEcCCC---cEEEecCCCCCEEEEEccCC
Confidence            99755555544 44454 678888643 32333221 223478999999744   4544432  35676666654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=95.35  E-value=0.52  Score=41.21  Aligned_cols=107  Identities=11%  Similarity=0.174  Sum_probs=61.4

Q ss_pred             EEEEEcCCc-EEEEeCCCCcEEEEEeeCC-EEEEEEc-C---CCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC
Q 019349           21 GFALSTKDG-FKIFDSSTGRLCYERAVGA-FSIVEML-Y---SSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL   94 (342)
Q Consensus        21 ~la~g~~~g-~~v~d~~~~~~~~~~~~~~-~~~~~~~-~---~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~   94 (342)
                      .+++++.|| +.-.|.++|+++....... ...+... .   ....+.++..     +.|+.|..+|..+|.....+..+
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p-----~~dG~l~a~~~~~G~~~~~~~~~   86 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEP-----FGDGNIYYFNAHQGLQKLPLSIR   86 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECC-----STTTEEEEEETTTEEEEEEEEHH
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEE-----CCCCEEEEEECCCCcEEeeeccc
Confidence            455666665 5777888887776654330 1111111 1   1223444421     14899999999988766555433


Q ss_pred             C-----ceEE---EEE-------cCCeEEEEE-CCeEEEEECCCCceeeEEeCC
Q 019349           95 T-----SILA---VRL-------NKKRLVIVL-REKTYIYDANTLAILDTIDTV  132 (342)
Q Consensus        95 ~-----~v~~---i~~-------~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~  132 (342)
                      .     ++..   ..+       ....+++.+ +++++..|+.+|+.+.++...
T Consensus        87 ~lv~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~  140 (339)
T 2be1_A           87 QLVSTSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPG  140 (339)
T ss_dssp             HHHTTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTT
T ss_pred             cceeccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecC
Confidence            2     2221   001       233333444 789999999999999888653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=94.74  E-value=3  Score=39.75  Aligned_cols=175  Identities=9%  Similarity=-0.048  Sum_probs=102.3

Q ss_pred             CCeEEEEECCCCcEEEEEecC--CceEEEEEcC--CeEEEEE--CCeEEEEECCCCceeeEEeCCC-CCceEEEEeeCCC
Q 019349           74 PRRLCLFNTTTGTALRELNFL--TSILAVRLNK--KRLVIVL--REKTYIYDANTLAILDTIDTVP-NLKGLCAFSPSLN  146 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~--~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~  146 (342)
                      .+.|+..|+.+......+...  ..+.++++++  +.++.+.  .+.|+.+++........+.... .+.+ .++.+.  
T Consensus        14 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~G-lAvD~~--   90 (628)
T 4a0p_A           14 RADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEG-MAVDWL--   90 (628)
T ss_dssp             TTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCE-EEEETT--
T ss_pred             CCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcce-EEEEeC--
Confidence            468899999876544333332  3678888875  3455555  5789988886544333333221 2333 344433  


Q ss_pred             ccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC--CCcEEEEEEcCCCeeEEEeccCcCc
Q 019349          147 ACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE--QGTIIRVFLVSEATKSYSFRRGTYP  224 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~--dg~~irlwd~~~~~~~~~~~~~~~~  224 (342)
                      +..|..+.. ..+.|.+.++........+...-.....|+++|...+|.-...  .++ |...++. |.....+...  -
T Consensus        91 ~~~LY~tD~-~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~-I~r~~~d-G~~~~~l~~~--~  165 (628)
T 4a0p_A           91 GKNLYWADT-GTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPK-IDRAAMD-GSERTTLVPN--V  165 (628)
T ss_dssp             TTEEEEEET-TTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCSCEEEECS--C
T ss_pred             CCEEEEEEC-CCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCE-EEEEeCC-CCceEEEECC--C
Confidence            334444443 4689999998754433233233445689999985445544432  344 4566764 3333333222  2


Q ss_pred             eeEEEEEEecCCCcccEEEEE-eCCCcEEEEecCCC
Q 019349          225 STIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPGFA  259 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~-s~dg~i~vwd~~~~  259 (342)
                      .....|++++++.   .|..+ ...+.|..+|++..
T Consensus       166 ~~P~GlalD~~~~---~LY~aD~~~~~I~~~d~dG~  198 (628)
T 4a0p_A          166 GRANGLTIDYAKR---RLYWTDLDTNLIESSNMLGL  198 (628)
T ss_dssp             SSEEEEEEETTTT---EEEEEETTTTEEEEEETTSC
T ss_pred             CCcceEEEccccC---EEEEEECCCCEEEEEcCCCC
Confidence            3468899999766   45444 56678999998754

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=94.20  E-value=2.3  Score=36.06  Aligned_cols=187  Identities=10%  Similarity=0.040  Sum_probs=93.3

Q ss_pred             CeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEEC------CeEEEEECCCCceeeEEe
Q 019349           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVLR------EKTYIYDANTLAILDTID  130 (342)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~d------~~i~i~d~~~~~~~~~~~  130 (342)
                      +.+.++||..    ..+.+.++|..+++....-..+.  .-.++....+.+++...      +.+.+||..+.+-...-.
T Consensus        12 ~~l~~~GG~~----~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~   87 (306)
T 3ii7_A           12 DYRIALFGGS----QPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLG   87 (306)
T ss_dssp             CEEEEEECCS----STTSEEEEETTTTEEEECCCCSCCCBSCEEEEETTEEEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred             ceEEEEeCCC----CCceEEEecCCCCCEecCCCCCcccceeEEEEECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence            5566666642    25789999998887543222222  11223334555665542      578899988764322212


Q ss_pred             CCCCCceEEEEeeCCCccEEEEeCCC----CccEEEEEEccCCcee--EEEecccCCeeEEEECCCCCEEEEEeCC----
Q 019349          131 TVPNLKGLCAFSPSLNACFLAVPAST----TKGSVLVYNVMELHSH--CEIDAHQAPLAAIVLSSNGMYIATASEQ----  200 (342)
Q Consensus       131 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~g~i~iwd~~~~~~~--~~~~~h~~~v~~i~~s~dg~~lat~s~d----  200 (342)
                      .+.......+...  ++..++++|.+    ....+.+||..+.+=.  ..+......-.++.+  +++.++.|+.+    
T Consensus        88 ~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  163 (306)
T 3ii7_A           88 PPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNV  163 (306)
T ss_dssp             CSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTT
T ss_pred             CCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCC
Confidence            2222222222222  34566666631    1246889998876422  112111111122222  66777777632    


Q ss_pred             -----CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC-----CcEEEEecCCC
Q 019349          201 -----GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGFA  259 (342)
Q Consensus       201 -----g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d-----g~i~vwd~~~~  259 (342)
                           .. +.+||..+.+-.. +.....+..-.+++.. +++   +++.|+.+     ..+.+||+++.
T Consensus       164 ~~~~~~~-~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~-~~~---i~v~GG~~~~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          164 SGRVLNS-CEVYDPATETWTE-LCPMIEARKNHGLVFV-KDK---IFAVGGQNGLGGLDNVEYYDIKLN  226 (306)
T ss_dssp             TCEECCC-EEEEETTTTEEEE-ECCCSSCCBSCEEEEE-TTE---EEEECCEETTEEBCCEEEEETTTT
T ss_pred             cccccce-EEEeCCCCCeEEE-CCCccchhhcceEEEE-CCE---EEEEeCCCCCCCCceEEEeeCCCC
Confidence                 23 4589998775322 2111111111122222 566   67776653     46888887654

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=93.88  E-value=2.6  Score=35.55  Aligned_cols=177  Identities=7%  Similarity=-0.051  Sum_probs=87.6

Q ss_pred             CCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEE--C-----CeEEEEECCCCc---eeeEEeCCCCCceEEEE
Q 019349           74 PRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL--R-----EKTYIYDANTLA---ILDTIDTVPNLKGLCAF  141 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~--d-----~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~  141 (342)
                      .+.+.++|..+++....-..+.  .-.++....+.+++..  +     +.+.+||+.+.+   -...-..+.......+.
T Consensus        30 ~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~  109 (301)
T 2vpj_A           30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGAT  109 (301)
T ss_dssp             CCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEE
T ss_pred             eeEEEEEcCCCCeEEeCCCCChhhccccEEEECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEE
Confidence            4678999998876443222222  1123333455666654  1     468999987765   21111111111222222


Q ss_pred             eeCCCccEEEEeCCCC---ccEEEEEEccCCce--eEEEecccCCeeEEEECCCCCEEEEEeCCCc----EEEEEEcCCC
Q 019349          142 SPSLNACFLAVPASTT---KGSVLVYNVMELHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQGT----IIRVFLVSEA  212 (342)
Q Consensus       142 ~~~~~~~~l~~~~~~~---~g~i~iwd~~~~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~----~irlwd~~~~  212 (342)
                      ..  ++..++.+|...   ...+.+||+.+.+-  +..+......-.++.+  +++.++.|+.++.    .+.+||..+.
T Consensus       110 ~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~  185 (301)
T 2vpj_A          110 TL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTG  185 (301)
T ss_dssp             EE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTT
T ss_pred             EE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCC
Confidence            22  345666665321   23688999877652  2222211111222223  6777888775431    1468998876


Q ss_pred             eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC-----CcEEEEecCCC
Q 019349          213 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGFA  259 (342)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d-----g~i~vwd~~~~  259 (342)
                      +-.. +.....+..-.+++. -+++   +++.|+.+     +.+.+||+++.
T Consensus       186 ~W~~-~~~~p~~r~~~~~~~-~~~~---i~v~GG~~~~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          186 HWTN-VTPMATKRSGAGVAL-LNDH---IYVVGGFDGTAHLSSVEAYNIRTD  232 (301)
T ss_dssp             EEEE-ECCCSSCCBSCEEEE-ETTE---EEEECCBCSSSBCCCEEEEETTTT
T ss_pred             cEEe-CCCCCcccccceEEE-ECCE---EEEEeCCCCCcccceEEEEeCCCC
Confidence            5322 111111111112222 2566   77777654     46889998654

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=92.42  E-value=1.1  Score=36.54  Aligned_cols=102  Identities=11%  Similarity=0.021  Sum_probs=56.4

Q ss_pred             EEEEeeCCCccEEEEeCCCCccEEEEEEccCCce------eEEEec-ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 019349          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS------HCEIDA-HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS  210 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~------~~~~~~-h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~  210 (342)
                      +..++++|++.+.++ .   +|.+.-.+..+.+.      -..+-. --..-.++.|.|+|.+.++  .||.+.| ++-.
T Consensus        43 ~~~laf~P~G~LYaV-~---~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr-~~pP  115 (236)
T 1tl2_A           43 FKFLFLSPGGELYGV-L---NDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYK-ASPP  115 (236)
T ss_dssp             CSEEEECTTSCEEEE-E---TTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEE-ESCC
T ss_pred             ceeEEECCCccEEEE-e---CCeEEEECCCCCCcccccccccEecccccccceEEEECCCCCEEEe--CCCEEEE-eCCC
Confidence            336677777876666 3   46666656544221      111110 0011478999999998888  4687654 4543


Q ss_pred             C-CeeE-----EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEE
Q 019349          211 E-ATKS-----YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLH  252 (342)
Q Consensus       211 ~-~~~~-----~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~  252 (342)
                      + +..-     ..+-.+ .=..+..|.|.|++.   +.|+.  |+.++
T Consensus       116 ~~~~~~Wl~~a~~vg~~-gw~~~~~lff~p~G~---Lyav~--dg~ly  157 (236)
T 1tl2_A          116 QSDTDNWIARATEVGSG-GWSGFKFLFFHPNGY---LYAVH--GQQFY  157 (236)
T ss_dssp             CSTTCCHHHHSEEEECS-SGGGEEEEEECTTSC---EEEEE--TTEEE
T ss_pred             cCCCCceeccccEeccC-CCCceEEEEECCCce---EEEEe--CCcEE
Confidence            2 2110     011010 112478999999998   55555  77744

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=92.26  E-value=5.8  Score=35.15  Aligned_cols=96  Identities=11%  Similarity=0.184  Sum_probs=58.5

Q ss_pred             ccEEEEEEccCCceeEEEe--------------cc----cCCeeEEEECCC----CCEEEEEeCCCcEEEEEEcCCC---
Q 019349          158 KGSVLVYNVMELHSHCEID--------------AH----QAPLAAIVLSSN----GMYIATASEQGTIIRVFLVSEA---  212 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~--------------~h----~~~v~~i~~s~d----g~~lat~s~dg~~irlwd~~~~---  212 (342)
                      .+.|.|+|+.+++.-+.+.              +.    ...|..|++||+    ++.|.-..-.++  ++|.+.+.   
T Consensus       180 ~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~--~ly~V~T~~L~  257 (381)
T 3q6k_A          180 RGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI--KVYSVNTKELK  257 (381)
T ss_dssp             TTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS--EEEEEEHHHHS
T ss_pred             CCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC--cEEEEEHHHhh
Confidence            5668888887776443321              11    246889999998    788888877775  46766421   


Q ss_pred             -----eeEEEeccCcCceeEEEEEEe-cCCCcccEEEEEeCCCcEEEEecCC
Q 019349          213 -----TKSYSFRRGTYPSTIFSLSFG-QSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       213 -----~~~~~~~~~~~~~~v~~l~fs-~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                           ..+..+-.......-..+++. .+|.   ++++--+.+.|..|+..+
T Consensus       258 ~~~~~~~v~~~G~kg~~s~~~~~~~D~~~G~---ly~~~~~~~aI~~w~~~~  306 (381)
T 3q6k_A          258 QKGGKLNPELLGNRGKYNDAIALAYDPKTKV---IFFAEANTKQVSCWNTQK  306 (381)
T ss_dssp             STTCCCCCEEEEECCTTCCEEEEEECTTTCE---EEEEESSSSEEEEEETTS
T ss_pred             CcchhhceEEeeecCCCCCcceEEEeCCCCe---EEEEeccCCeEEEEeCCC
Confidence                 112222111001223456675 5676   777778888999999875

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=92.17  E-value=4.9  Score=34.07  Aligned_cols=190  Identities=17%  Similarity=0.039  Sum_probs=90.1

Q ss_pred             CeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEE-----------CCeEEEEECCCCce
Q 019349           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVL-----------REKTYIYDANTLAI  125 (342)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~-----------d~~i~i~d~~~~~~  125 (342)
                      +.+.+.||. .. ..-+.+.++|..+++....-..+.  .-.++....+.+++..           .+.+.+||..+.+-
T Consensus        25 ~~i~v~GG~-~~-~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W  102 (308)
T 1zgk_A           25 RLIYTAGGY-FR-QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW  102 (308)
T ss_dssp             CCEEEECCB-SS-SBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCEEEETTEEEECCCEEEEETTTTEE
T ss_pred             CEEEEEeCc-CC-CCcceEEEEcCCCCeEeECCCCCcccccceEEEECCEEEEECCCcCCCCCCeecceEEEECCCCCeE
Confidence            445555542 11 124678999998876543322222  1122333355555543           13588899877532


Q ss_pred             eeEEeCCCCCceEEEEeeCCCccEEEEeCCCC---ccEEEEEEccCCcee--EEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349          126 LDTIDTVPNLKGLCAFSPSLNACFLAVPASTT---KGSVLVYNVMELHSH--CEIDAHQAPLAAIVLSSNGMYIATASEQ  200 (342)
Q Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~g~i~iwd~~~~~~~--~~~~~h~~~v~~i~~s~dg~~lat~s~d  200 (342)
                      ...-..+.......+...  ++..++.+|...   ...+.+||..+.+=.  ..+......-.++.+  ++.+++.|+.+
T Consensus       103 ~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~  178 (308)
T 1zgk_A          103 SPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFD  178 (308)
T ss_dssp             EECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             eECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCC
Confidence            111111111112222222  345666665311   135888998776421  112211111222333  67777777754


Q ss_pred             Cc----EEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC-----CcEEEEecCCC
Q 019349          201 GT----IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGFA  259 (342)
Q Consensus       201 g~----~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d-----g~i~vwd~~~~  259 (342)
                      +.    .+.+||+.+.+-.. +.....+..-.+++.. +++   +++.|+.+     ..+.+||+++.
T Consensus       179 ~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~-~~~---iyv~GG~~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          179 GTNRLNSAECYYPERNEWRM-ITAMNTIRSGAGVCVL-HNC---IYAAGGYDGQDQLNSVERYDVETE  241 (308)
T ss_dssp             SSCBCCCEEEEETTTTEEEE-CCCCSSCCBSCEEEEE-TTE---EEEECCBCSSSBCCCEEEEETTTT
T ss_pred             CCCcCceEEEEeCCCCeEee-CCCCCCccccceEEEE-CCE---EEEEeCCCCCCccceEEEEeCCCC
Confidence            32    14588987765321 1111111111122222 566   77777654     56888987654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=91.85  E-value=5.5  Score=34.01  Aligned_cols=102  Identities=12%  Similarity=0.097  Sum_probs=58.8

Q ss_pred             CCCccEEEEeCCCC------------ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe---CCCcEEEEEE
Q 019349          144 SLNACFLAVPASTT------------KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS---EQGTIIRVFL  208 (342)
Q Consensus       144 ~~~~~~l~~~~~~~------------~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s---~dg~~irlwd  208 (342)
                      ++++..|.++....            ...|+..++...+......   .+  +..|+++|++|+-..   .+...|..-+
T Consensus        61 ~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~---~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~  135 (302)
T 3s25_A           61 NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP---DP--CIYASLIGNYIYYLHYDTQTATSLYRIR  135 (302)
T ss_dssp             EECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC---SC--EEEEEEETTEEEEEEESSSSCEEEEEEE
T ss_pred             EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec---CC--ccEEEEeCCEEEEEeecCCCCceEEEEE
Confidence            34455777665211            3578888887665332221   11  236788999999876   2333344555


Q ss_pred             cCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeC-CCcEEEEecCCCC
Q 019349          209 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGSLHVFSPGFAI  260 (342)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~-dg~i~vwd~~~~~  260 (342)
                      +. |.....+..+  .  +  .+|+++++   .|.-.+. ...|++-+++...
T Consensus       136 ~d-Gs~~~~lt~~--~--~--~~~~~~g~---~iy~t~~g~~~Iy~~~l~g~~  178 (302)
T 3s25_A          136 ID-GEEKKKIKNH--Y--L--FTCNTSDR---YFYYNNPKNGQLYRYDTASQS  178 (302)
T ss_dssp             TT-SCCCEEEESS--C--C--CCSEEETT---EEEEECTTTCCEEEEETTTTE
T ss_pred             CC-CCCeEEEeCC--C--c--eEeeEECC---EEEEEeCCCceEEEEECCCCC
Confidence            54 3333444322  1  1  46788888   6776655 5678888876654

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=91.73  E-value=4.2  Score=40.90  Aligned_cols=33  Identities=27%  Similarity=0.235  Sum_probs=28.6

Q ss_pred             eEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      .+.+++..++..   ++.+-+.|+++|||++.++..
T Consensus       237 ~~~~~~~~~~~~---~lftl~~D~~LRiWsl~t~~~  269 (950)
T 4gq2_M          237 TIISMIFLSTYN---VLVMLSLDYKLKVLDLSTNQC  269 (950)
T ss_dssp             CEEEEEEETTTT---EEEEEETTCEEEEEETTTTEE
T ss_pred             eEEEEeecCCCc---EEEEEECCCEEEEEECCCCCe
Confidence            367788888888   999999999999999988764

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.54  E-value=6.6  Score=34.30  Aligned_cols=100  Identities=13%  Similarity=0.126  Sum_probs=53.8

Q ss_pred             EEEEeeCCCccEEEEeCCCCccEEEEEEccCCc-eeEEEe---cccCCeeEEEECCC---CCEE-EEEeC---C----Cc
Q 019349          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELH-SHCEID---AHQAPLAAIVLSSN---GMYI-ATASE---Q----GT  202 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~-~~~~~~---~h~~~v~~i~~s~d---g~~l-at~s~---d----g~  202 (342)
                      ...+++.|++.++++.   ..|.|+++| ..++ .+..+.   ........|+|+|+   +..| ++-+.   +    +.
T Consensus        31 P~~ia~~pdG~l~V~e---~~g~I~~~d-~~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           31 PWSIAPLGGGRYLVTE---RPGRLVLIS-PSGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             EEEEEEEETTEEEEEE---TTTEEEEEC-SSCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CeEEEEcCCCeEEEEe---CCCEEEEEe-CCCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            3455556667655543   358899987 3443 222221   12346889999997   4444 44332   2    34


Q ss_pred             EEEEEEcCCC-------eeE-EEeccCcCceeEEEEEEecCCCcccEEEEEe
Q 019349          203 IIRVFLVSEA-------TKS-YSFRRGTYPSTIFSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       203 ~irlwd~~~~-------~~~-~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s  246 (342)
                      + ..|+...+       +.+ ..+... .......|+|.||+.   ++++.+
T Consensus       107 v-~r~~~~~~~~~~~~~~~l~~~~~~~-~~h~~~~l~~~pDG~---Lyvt~G  153 (354)
T 3a9g_A          107 V-IRGRLDGSTFKLKEVKTLIDGIPGA-YIHNGGRIRFGPDGM---LYITTG  153 (354)
T ss_dssp             E-EEEEECSSSCCEEEEEEEEEEEECC-SSCCCCCEEECTTSC---EEEECC
T ss_pred             E-EEEEECCCCcCcCccEEEEEcCCCC-CCcCCceEEECCCCc---EEEEEC
Confidence            4 45776543       111 123211 111246799999998   555543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=91.24  E-value=7  Score=34.06  Aligned_cols=100  Identities=12%  Similarity=0.091  Sum_probs=55.8

Q ss_pred             EEEEeeCCCccEEEEeCCCCccEEEEEEccCCce--eEEEe---cccCCeeEEEECCC---CCEEEEEeC-C-----CcE
Q 019349          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--HCEID---AHQAPLAAIVLSSN---GMYIATASE-Q-----GTI  203 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~--~~~~~---~h~~~v~~i~~s~d---g~~lat~s~-d-----g~~  203 (342)
                      ...+++.|++.++++.   ..|.|.+++  .++.  +..+.   ........|+|+|+   +..|..+.. .     +++
T Consensus        33 P~~ia~~pdG~l~V~e---~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           33 PWALAFLPDGGMLIAE---RPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             EEEEEECTTSCEEEEE---TTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             ceEEEEcCCCeEEEEe---CCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            4466777888766554   358999998  3332  22221   12346789999998   444444433 2     444


Q ss_pred             EEEEEcCCCe-----eEE-Eecc-CcCceeEEEEEEecCCCcccEEEEEe
Q 019349          204 IRVFLVSEAT-----KSY-SFRR-GTYPSTIFSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       204 irlwd~~~~~-----~~~-~~~~-~~~~~~v~~l~fs~d~~~~~~l~~~s  246 (342)
                       ..|+...+.     .+. .+.. .........|+|.||+.   ++++.+
T Consensus       108 -~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~---Lyv~~G  153 (352)
T 2ism_A          108 -VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM---LYVTTG  153 (352)
T ss_dssp             -EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC---EEEECC
T ss_pred             -EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC---EEEEEC
Confidence             467776431     122 2321 11111246799999998   555543

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=91.12  E-value=8.7  Score=34.91  Aligned_cols=104  Identities=8%  Similarity=0.065  Sum_probs=55.5

Q ss_pred             ceEEEEEcCCeEEEEE--C-CeEEEEECCCCceee--EEeCC----CCCceEEEEeeCCC----ccEEEEeCC------C
Q 019349           96 SILAVRLNKKRLVIVL--R-EKTYIYDANTLAILD--TIDTV----PNLKGLCAFSPSLN----ACFLAVPAS------T  156 (342)
Q Consensus        96 ~v~~i~~~~~~~~~~~--d-~~i~i~d~~~~~~~~--~~~~~----~~~~~~~~~~~~~~----~~~l~~~~~------~  156 (342)
                      ...++++.++..++++  . +.|++++..+++...  .+...    ....++..++.+|+    +.+.++-..      .
T Consensus        28 ~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~  107 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTD  107 (454)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--
T ss_pred             CceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCc
Confidence            5678888887655544  3 368888765554322  22111    12346677788773    333222210      0


Q ss_pred             C----ccEEEEEEccCC-------ceeE-EEec-ccCCeeEEEECCCCCEEEEEeC
Q 019349          157 T----KGSVLVYNVMEL-------HSHC-EIDA-HQAPLAAIVLSSNGMYIATASE  199 (342)
Q Consensus       157 ~----~g~i~iwd~~~~-------~~~~-~~~~-h~~~v~~i~~s~dg~~lat~s~  199 (342)
                      .    ...|.-++....       +.+. .+.. .......|+|.|||.+.++-++
T Consensus       108 ~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          108 KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence            0    235666665432       1111 1221 1234688999999998777553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=90.86  E-value=6.6  Score=35.71  Aligned_cols=103  Identities=13%  Similarity=0.065  Sum_probs=57.0

Q ss_pred             eEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce--eEEEec------ccCCeeEEEECCC---CCEEEEEe-C-----
Q 019349          137 GLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--HCEIDA------HQAPLAAIVLSSN---GMYIATAS-E-----  199 (342)
Q Consensus       137 ~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~--~~~~~~------h~~~v~~i~~s~d---g~~lat~s-~-----  199 (342)
                      ...++++.|++.++++.-  ..+.|.+++..+++.  +..+..      ....+..|+|+||   +..|..+. .     
T Consensus        28 ~P~~~a~~pdG~l~V~e~--~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           28 KPHALLWGPDNQIWLTER--ATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SEEEEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CceEEEEcCCCcEEEEEc--CCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            345777788888777653  235788887655543  222221      2456779999995   44444433 2     


Q ss_pred             -------CCcEEEEEEcCCC-------eeEE-EeccCcCceeEEEEEEecCCCcccEEEEEe
Q 019349          200 -------QGTIIRVFLVSEA-------TKSY-SFRRGTYPSTIFSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       200 -------dg~~irlwd~~~~-------~~~~-~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s  246 (342)
                             ...+. -|+...+       +.+. .+... ..+....|+|.||+.   ++++.+
T Consensus       106 ~~~~~~~~~~v~-r~~~~~~~~~~~~~~~i~~~~p~~-~~H~~~~l~f~pDG~---Lyv~~G  162 (454)
T 1cru_A          106 TDKELPNQTIIR-RYTYNKSTDTLEKPVDLLAGLPSS-KDHQSGRLVIGPDQK---IYYTIG  162 (454)
T ss_dssp             --CCSCEEEEEE-EEEEETTTTEEEEEEEEEEEECCC-SSCCEEEEEECTTSC---EEEEEC
T ss_pred             CccccccccEEE-EEEECCCCCCcCCcEEEEEcCCCC-CCCCCCeEeECCCCe---EEEEEC
Confidence                   12333 3444321       1222 23221 123378899999998   555544

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=90.46  E-value=7.4  Score=32.98  Aligned_cols=184  Identities=12%  Similarity=0.042  Sum_probs=83.9

Q ss_pred             EEEEcCCCCEEEEEcC--------Cc----EEEEeCCCCcEEEEEee-CCEE-EEEEcCCCCeEEEEcCCC--CCCCCCC
Q 019349           12 FVSFNQDNSGFALSTK--------DG----FKIFDSSTGRLCYERAV-GAFS-IVEMLYSSSLLAIVGAGE--QPSLSPR   75 (342)
Q Consensus        12 ~l~fs~d~~~la~g~~--------~g----~~v~d~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~g~--~~~~~d~   75 (342)
                      ......++..++.|+.        ..    +.+||+.+.+-...... .... ...... .+.+.+.||..  ......+
T Consensus        39 ~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~  117 (315)
T 4asc_A           39 VSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA-LNSIYVVGGREIKDGERCLD  117 (315)
T ss_dssp             EEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE-TTEEEEECCEESSTTCCBCC
T ss_pred             eEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE-CCEEEEEeCCcCCCCCcccc
Confidence            3344457777666652        11    45678877653221111 1111 011111 34555555521  1112346


Q ss_pred             eEEEEECCCCcEEEEEecCC--ceEEEEEcCCeEEEEEC--------CeEEEEECCCCceeeEEeCCCCCceEEEEeeCC
Q 019349           76 RLCLFNTTTGTALRELNFLT--SILAVRLNKKRLVIVLR--------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL  145 (342)
Q Consensus        76 ~i~iwd~~~~~~~~~~~~~~--~v~~i~~~~~~~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (342)
                      .+.++|..+++....-..+.  .-.++....+.+++...        +.+.+||..+.+=...-..+.......+...  
T Consensus       118 ~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--  195 (315)
T 4asc_A          118 SVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH--  195 (315)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--
T ss_pred             eEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE--
Confidence            79999998876543222222  11233334555666541        3689999877532111011111112222222  


Q ss_pred             CccEEEEeCCCCc---cEEEEEEccCCcee--EEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349          146 NACFLAVPASTTK---GSVLVYNVMELHSH--CEIDAHQAPLAAIVLSSNGMYIATASEQ  200 (342)
Q Consensus       146 ~~~~l~~~~~~~~---g~i~iwd~~~~~~~--~~~~~h~~~v~~i~~s~dg~~lat~s~d  200 (342)
                      ++..++.+|....   ..+.+||+.+.+=.  ..+........++.+  +++.++.|+.+
T Consensus       196 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~  253 (315)
T 4asc_A          196 DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSL--VGTLYAIGGFA  253 (315)
T ss_dssp             TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEE
T ss_pred             CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEEE--CCEEEEECCcc
Confidence            3456666663221   36888998876422  111111111122323  56777777753

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.38  E-value=13  Score=35.77  Aligned_cols=195  Identities=10%  Similarity=0.053  Sum_probs=96.3

Q ss_pred             CeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEE-e-----cCC---ceEEEEEc-CCeEEEEE--C------CeEEEEEC
Q 019349           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL-N-----FLT---SILAVRLN-KKRLVIVL--R------EKTYIYDA  120 (342)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~-~-----~~~---~v~~i~~~-~~~~~~~~--d------~~i~i~d~  120 (342)
                      +.+.+.||...  ..-+.+.++|..+++....- .     .+.   .-..+.+. .+.+++.+  +      +.+.+||.
T Consensus       398 ~~iyv~GG~~~--~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          398 NDVFYMGGSNP--YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             SCEEEECCBSS--SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             CEEEEECCCCC--CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            44555554211  23467889999888765433 2     111   12333342 55666654  1      35788998


Q ss_pred             CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCcee--EE---EecccCCeeEEEECCC-CCEE
Q 019349          121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--CE---IDAHQAPLAAIVLSSN-GMYI  194 (342)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~--~~---~~~h~~~v~~i~~s~d-g~~l  194 (342)
                      .+.+=...-..+.......+... .++..++++|.+..+.+.+||..+.+=.  ..   +......-.++.+..+ ++.+
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~-~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSL-PDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEEC-TTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEE-cCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            77521111011111112222221 2456777777533337999998876421  11   1111122234556655 6777


Q ss_pred             EEEeC--CC----cEEEEEEcCCCee-----EEEeccC-cCceeEEEEEEecCCCcccEEEEEeC--------CCcEEEE
Q 019349          195 ATASE--QG----TIIRVFLVSEATK-----SYSFRRG-TYPSTIFSLSFGQSMQFQDILVATSS--------SGSLHVF  254 (342)
Q Consensus       195 at~s~--dg----~~irlwd~~~~~~-----~~~~~~~-~~~~~v~~l~fs~d~~~~~~l~~~s~--------dg~i~vw  254 (342)
                      +.|+.  ++    .-+..||+.+.+-     -..+... ..+..-.+++...+++   +++.|+.        ...|.+|
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~---iyv~GG~~~~~~~~~~~~v~~y  631 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRK---LLIVGGTSPSGLFDRTNSIISL  631 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTE---EEEECCBCSSCCCCTTTSEEEE
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCE---EEEECCccCCCCCCCCCeEEEE
Confidence            77775  22    1246889887761     1111110 0010111233334366   6777763        3468899


Q ss_pred             ecCCC
Q 019349          255 SPGFA  259 (342)
Q Consensus       255 d~~~~  259 (342)
                      |+++.
T Consensus       632 d~~t~  636 (695)
T 2zwa_A          632 DPLSE  636 (695)
T ss_dssp             ETTTT
T ss_pred             ECCCC
Confidence            88754

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=90.26  E-value=8.7  Score=33.46  Aligned_cols=26  Identities=12%  Similarity=0.234  Sum_probs=19.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcEEEEe
Q 019349            9 PVFFVSFNQDNSGFALSTKDGFKIFD   34 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g~~v~d   34 (342)
                      ....++|.|||+++++-....+.+++
T Consensus        32 ~P~~ia~~pdG~l~V~e~~g~I~~i~   57 (352)
T 2ism_A           32 VPWALAFLPDGGMLIAERPGRIRLFR   57 (352)
T ss_dssp             CEEEEEECTTSCEEEEETTTEEEEEE
T ss_pred             CceEEEEcCCCeEEEEeCCCeEEEEE
Confidence            45799999999976665554467777

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.12  E-value=14  Score=35.62  Aligned_cols=196  Identities=9%  Similarity=0.027  Sum_probs=94.5

Q ss_pred             CCCCEEEEEcCC-----cEEEEeCCCCcEEEEE-e-------eCCEEEEEEcCC-CCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349           17 QDNSGFALSTKD-----GFKIFDSSTGRLCYER-A-------VGAFSIVEMLYS-SSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus        17 ~d~~~la~g~~~-----g~~v~d~~~~~~~~~~-~-------~~~~~~~~~~~~-~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      -++..++.|+.+     .+.+||+.+.+..... .       ............ .+.+.+.||...+...-+.+.++|.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456666666532     3577888776543222 1       111111122221 4455555553222112356889999


Q ss_pred             CCCcEEEEEecCC---ceEEEEEcCCeEEEEEC----CeEEEEECCCCceeeEEeC----CCCCceEEEEeeCCC-ccEE
Q 019349           83 TTGTALRELNFLT---SILAVRLNKKRLVIVLR----EKTYIYDANTLAILDTIDT----VPNLKGLCAFSPSLN-ACFL  150 (342)
Q Consensus        83 ~~~~~~~~~~~~~---~v~~i~~~~~~~~~~~d----~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~-~~~l  150 (342)
                      .+++....-..+.   .-..+.+..+.+++.+.    +.+.+||..+.+=. .+..    +.......++..+.+ +..+
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~-~~~~~g~~p~~r~~~~a~v~~~~~~~iy  554 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFK-DVTPKDEFFQNSLVSAGLEFDPVSKQGI  554 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEE-ECCCSSGGGGSCCBSCEEEEETTTTEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceE-EccCCCCCCCcccceeEEEEeCCCCEEE
Confidence            8876543322221   12223334566666551    27899999875311 1111    111122222332333 5566


Q ss_pred             EEeCCCCc-----cEEEEEEccCCce-----eEEEec---ccCCeeEEEECCCCCEEEEEeCC--------CcEEEEEEc
Q 019349          151 AVPASTTK-----GSVLVYNVMELHS-----HCEIDA---HQAPLAAIVLSSNGMYIATASEQ--------GTIIRVFLV  209 (342)
Q Consensus       151 ~~~~~~~~-----g~i~iwd~~~~~~-----~~~~~~---h~~~v~~i~~s~dg~~lat~s~d--------g~~irlwd~  209 (342)
                      +++|...+     ..+.+||+.+.+-     -..+..   ....-.+++...+++.++.|+.+        .. +.+||.
T Consensus       555 v~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~-v~~yd~  633 (695)
T 2zwa_A          555 ILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNS-IISLDP  633 (695)
T ss_dssp             EECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTS-EEEEET
T ss_pred             EECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCe-EEEEEC
Confidence            67764222     4689999987761     111211   11111122333337788888743        23 468999


Q ss_pred             CCCee
Q 019349          210 SEATK  214 (342)
Q Consensus       210 ~~~~~  214 (342)
                      .+.+-
T Consensus       634 ~t~~W  638 (695)
T 2zwa_A          634 LSETL  638 (695)
T ss_dssp             TTTEE
T ss_pred             CCCeE
Confidence            87754

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=89.68  E-value=8.3  Score=32.37  Aligned_cols=176  Identities=11%  Similarity=0.071  Sum_probs=84.3

Q ss_pred             CeEEEEECCCCcEEEEEecCCc--eEEEEEcCCeEEEEE--C-----CeEEEEECCCCceeeEEeCCCCCceEEEEeeCC
Q 019349           75 RRLCLFNTTTGTALRELNFLTS--ILAVRLNKKRLVIVL--R-----EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL  145 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~~--v~~i~~~~~~~~~~~--d-----~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (342)
                      +.+.++|..+++....-..+.+  -.++....+.+++..  +     +.+.+||..+.+-...-..+.......+...  
T Consensus        30 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--  107 (302)
T 2xn4_A           30 RSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--  107 (302)
T ss_dssp             CCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--
T ss_pred             CcEEEEcCcCCcEeEcccCCcccccceEEEECCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--
Confidence            5688999988764433222221  122333455666654  1     3688899877642211111111112222222  


Q ss_pred             CccEEEEeCCCC---ccEEEEEEccCCcee--EEEecccCCeeEEEECCCCCEEEEEeCCCc------EEEEEEcCCCee
Q 019349          146 NACFLAVPASTT---KGSVLVYNVMELHSH--CEIDAHQAPLAAIVLSSNGMYIATASEQGT------IIRVFLVSEATK  214 (342)
Q Consensus       146 ~~~~l~~~~~~~---~g~i~iwd~~~~~~~--~~~~~h~~~v~~i~~s~dg~~lat~s~dg~------~irlwd~~~~~~  214 (342)
                      ++..++++|.+.   -..+.+||+.+.+=.  ..+........++.+  +++.++.|+.++.      .+.+||..+.+-
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            344556665321   146888998776422  112211111222222  5677777764321      145899887653


Q ss_pred             EEEeccCcCceeEEEEEEecCCCcccEEEEEeCC-----CcEEEEecCCC
Q 019349          215 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS-----GSLHVFSPGFA  259 (342)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d-----g~i~vwd~~~~  259 (342)
                      ... .....+..-.+++. -+++   +++.|+.+     +.+.+||+++.
T Consensus       186 ~~~-~~~p~~r~~~~~~~-~~~~---iyv~GG~~~~~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          186 TYI-AEMSTRRSGAGVGV-LNNL---LYAVGGHDGPLVRKSVEVYDPTTN  230 (302)
T ss_dssp             EEE-CCCSSCCBSCEEEE-ETTE---EEEECCBSSSSBCCCEEEEETTTT
T ss_pred             EEC-CCCccccccccEEE-ECCE---EEEECCCCCCcccceEEEEeCCCC
Confidence            221 11111111112222 2566   77777654     46888887654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=88.50  E-value=10  Score=33.11  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=57.5

Q ss_pred             EEEEeeCCCccEEEEeCCCCccEEEEEEccCCce--eEEE----ecccCCeeEEEECCC----CCEEEEEe--CCCcEEE
Q 019349          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS--HCEI----DAHQAPLAAIVLSSN----GMYIATAS--EQGTIIR  205 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~--~~~~----~~h~~~v~~i~~s~d----g~~lat~s--~dg~~ir  205 (342)
                      ...+++.|++.++++.-  ..|.|++++...++.  +..+    .........|+|+||    +.+.++-+  .++++.|
T Consensus        34 P~~ia~~pdG~llVter--~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R  111 (347)
T 3das_A           34 PWGLAPLPGGDLLVSSR--DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVR  111 (347)
T ss_dssp             EEEEEECTTSCEEEEET--TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEE
T ss_pred             ceEEEEcCCCcEEEEEe--cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEE
Confidence            45667778887777653  368999998665543  2222    123456889999995    44433322  3445543


Q ss_pred             EEEcCCC----------eeEE-EeccCcCceeEEEEEEecCCCcccEEEEEe
Q 019349          206 VFLVSEA----------TKSY-SFRRGTYPSTIFSLSFGQSMQFQDILVATS  246 (342)
Q Consensus       206 lwd~~~~----------~~~~-~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s  246 (342)
                       |....+          +.+. .+... ..+.-..|+|.||+.   ++++.+
T Consensus       112 -~~~~~~~~~~~~~~~~~~i~~~~p~~-~~H~g~~l~fgpDG~---Lyvt~G  158 (347)
T 3das_A          112 -MLYDEKKPSGEQLGAPDTVFRGIPKG-VIHNGGRIAFGPDKM---LYAGTG  158 (347)
T ss_dssp             -EEBCTTSCTTCCBCCCEEEEEEECCC-SSCCCCCEEECTTSC---EEEECB
T ss_pred             -EEeCCCCcccccCCCcEEEEEcCCCC-CCccCccccCCCCCC---EEEEEC
Confidence             554431          2222 23221 112245699999998   555544

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=88.38  E-value=12  Score=32.35  Aligned_cols=139  Identities=14%  Similarity=0.016  Sum_probs=66.5

Q ss_pred             CeEEEEECCCCcEEEEEecCC--ce-EEEEEcCCeEEEEE--------CCeEEEEEC--CCCceeeEEeCCCCC---ceE
Q 019349           75 RRLCLFNTTTGTALRELNFLT--SI-LAVRLNKKRLVIVL--------REKTYIYDA--NTLAILDTIDTVPNL---KGL  138 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~~~~--~v-~~i~~~~~~~~~~~--------d~~i~i~d~--~~~~~~~~~~~~~~~---~~~  138 (342)
                      +.+.++|..+.+....-..+.  .- .++....+.+++..        .+.+.+||+  .+.+= ..+.....+   ...
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W-~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKW-NKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEE-EECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcE-EecCCCCCCcccccc
Confidence            689999999887654433332  22 34445566666653        235777887  33211 111111111   122


Q ss_pred             EEEeeCCCccEEEEeCCCCc--------------------cEEEEEEccCCc--eeEEEecccCCeeEEEECCCCCEEEE
Q 019349          139 CAFSPSLNACFLAVPASTTK--------------------GSVLVYNVMELH--SHCEIDAHQAPLAAIVLSSNGMYIAT  196 (342)
Q Consensus       139 ~~~~~~~~~~~l~~~~~~~~--------------------g~i~iwd~~~~~--~~~~~~~h~~~v~~i~~s~dg~~lat  196 (342)
                      .+...  ++.+++++|...+                    ..+.+||+.+.+  .+..+......-.++.  .+++.++.
T Consensus       247 ~~~~~--~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~  322 (357)
T 2uvk_A          247 FAGIS--NDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQGRAYGVSLP--WNNSLLII  322 (357)
T ss_dssp             EEEEE--TTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSCCBSSEEEE--ETTEEEEE
T ss_pred             eEEEE--CCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCCcccceeEE--eCCEEEEE
Confidence            22222  2446666663111                    257889987654  3333332222222232  46788888


Q ss_pred             EeCCCc-----EEEEEEcCCCeeEEEe
Q 019349          197 ASEQGT-----IIRVFLVSEATKSYSF  218 (342)
Q Consensus       197 ~s~dg~-----~irlwd~~~~~~~~~~  218 (342)
                      |+.++.     -+.++++++++.+...
T Consensus       323 GG~~~~~~~~~~v~~l~~~~~~~~~~~  349 (357)
T 2uvk_A          323 GGETAGGKAVTDSVLITVKDNKVTVQN  349 (357)
T ss_dssp             EEECGGGCEEEEEEEEEC-CCSCEEEC
T ss_pred             eeeCCCCCEeeeEEEEEEcCcEeEeee
Confidence            886531     1234588777765543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=87.77  E-value=13  Score=32.36  Aligned_cols=136  Identities=15%  Similarity=0.121  Sum_probs=74.5

Q ss_pred             CceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeC----CCCCceEEEEeeCCC----cc-EEEEeCCCCccEEE
Q 019349           95 TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDT----VPNLKGLCAFSPSLN----AC-FLAVPASTTKGSVL  162 (342)
Q Consensus        95 ~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~----~~-~l~~~~~~~~g~i~  162 (342)
                      .....|++.++..++++   .++|++++..+++.......    .....+...++.+|+    +. ++.++.. .++.|.
T Consensus        32 ~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~-~~~~v~  110 (347)
T 3das_A           32 NSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA-SDNRIV  110 (347)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS-SSEEEE
T ss_pred             CCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC-CCCEEE
Confidence            46788999887644444   46888887665543211111    122356777888774    32 2333322 345677


Q ss_pred             EEEccCC----------cee-EEEe-cccCCeeEEEECCCCCEEEEEeC-------------CCcEEEEEEcCCCe----
Q 019349          163 VYNVMEL----------HSH-CEID-AHQAPLAAIVLSSNGMYIATASE-------------QGTIIRVFLVSEAT----  213 (342)
Q Consensus       163 iwd~~~~----------~~~-~~~~-~h~~~v~~i~~s~dg~~lat~s~-------------dg~~irlwd~~~~~----  213 (342)
                      -|.+...          +.+ ..+. .....-..|+|.|||.+.++-++             .|.++|+ +.. |+    
T Consensus       111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi-~~d-G~ip~~  188 (347)
T 3das_A          111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRM-TPD-GEPAPG  188 (347)
T ss_dssp             EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEE-CTT-SSBCTT
T ss_pred             EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEE-eCC-CCccCC
Confidence            6766541          111 1232 11123467999999998777542             3565543 432 22    


Q ss_pred             ------eEEEeccCcCceeEEEEEEecCCC
Q 019349          214 ------KSYSFRRGTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       214 ------~~~~~~~~~~~~~v~~l~fs~d~~  237 (342)
                            .+..  .+.  .....++|+|++.
T Consensus       189 nPf~~~~i~a--~G~--RNp~Gla~dp~G~  214 (347)
T 3das_A          189 NPFPGSPVYS--YGH--RNVQGLAWDDKQR  214 (347)
T ss_dssp             CSSTTCCEEE--BCC--SBCCEEEECTTCC
T ss_pred             CCCCCCeEEe--eCC--CCcceEEECCCCC
Confidence                  1222  222  2356799999887

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=87.55  E-value=12  Score=31.65  Aligned_cols=186  Identities=9%  Similarity=0.101  Sum_probs=87.0

Q ss_pred             EEEEEcCCcEEEEeCCCCcEEEEEee---CCEEEEEEcCCCCeEEEEcCCC-CC----CCCCCeEEEEECCCCcEEEEEe
Q 019349           21 GFALSTKDGFKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGE-QP----SLSPRRLCLFNTTTGTALRELN   92 (342)
Q Consensus        21 ~la~g~~~g~~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~-~~----~~~d~~i~iwd~~~~~~~~~~~   92 (342)
                      .++.|+ ..+..||+.+.+-......   ..........+ +.+.+.||.. +.    ......+..+|..+++....-.
T Consensus        18 i~~~GG-~~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~   95 (318)
T 2woz_A           18 ILLVND-TAAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPP   95 (318)
T ss_dssp             EEEECS-SEEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSC
T ss_pred             hhhccc-cceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCC
Confidence            344444 4578999988865432111   11222223333 4444555411 00    0112347889988876543222


Q ss_pred             cCC--ceEEEEEcCCeEEEEE--C-------CeEEEEECCCCceeeEEeCCCCC-ceEEEEeeCCCccEEEEeCCCC---
Q 019349           93 FLT--SILAVRLNKKRLVIVL--R-------EKTYIYDANTLAILDTIDTVPNL-KGLCAFSPSLNACFLAVPASTT---  157 (342)
Q Consensus        93 ~~~--~v~~i~~~~~~~~~~~--d-------~~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~---  157 (342)
                      .+.  .-.++....+.+++..  +       +.+.+||..+.+=.. +...+.+ ....++..  ++...+.+|...   
T Consensus        96 ~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~  172 (318)
T 2woz_A           96 LPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSE-VKNLPIKVYGHNVISH--NGMIYCLGGKTDDKK  172 (318)
T ss_dssp             BSSCBCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEE-ECCCSSCEESCEEEEE--TTEEEEECCEESSSC
T ss_pred             CCccccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeE-CCCCCCcccccEEEEE--CCEEEEEcCCCCCCC
Confidence            222  1122333355566554  2       357888887653221 1111111 11222222  345666665311   


Q ss_pred             -ccEEEEEEccCCce--eEEEecccCCeeEEEECCCCCEEEEEeCCCc----EEEEEEcCCCe
Q 019349          158 -KGSVLVYNVMELHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQGT----IIRVFLVSEAT  213 (342)
Q Consensus       158 -~g~i~iwd~~~~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~----~irlwd~~~~~  213 (342)
                       ...+.+||+.+.+=  +..+......-.++.+  +++.++.|+.++.    .+.+||+.+.+
T Consensus       173 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~  233 (318)
T 2woz_A          173 CTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNK  233 (318)
T ss_dssp             BCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCC
T ss_pred             ccceEEEEcCCCCEEEECCCCCCCcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCe
Confidence             23589999887642  2112111111122323  5678888775432    24578887764

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=85.31  E-value=18  Score=31.43  Aligned_cols=143  Identities=8%  Similarity=0.055  Sum_probs=0.0

Q ss_pred             CceEEEEEcCCeE-EEEE--CCeEEEEECCCCceeeEEeCCC-----CCceEEEEeeCCC---ccEEEEeCCCC------
Q 019349           95 TSILAVRLNKKRL-VIVL--REKTYIYDANTLAILDTIDTVP-----NLKGLCAFSPSLN---ACFLAVPASTT------  157 (342)
Q Consensus        95 ~~v~~i~~~~~~~-~~~~--d~~i~i~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~---~~~l~~~~~~~------  157 (342)
                      .....|++.++.. +.+.  .++|++++ .+++....+....     ...+...++.+|+   +..|.++.. .      
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~-~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~-~~~~~g~   95 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQ-AGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS-EVGDDGK   95 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEE-TTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEE-EECSSSC
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEe-CCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEe-CCCCCCC


Q ss_pred             -ccEEEEEEccCC----ceeEEE-------ecccCCeeEEEECCCCCEEEEEeCCCc------------EEEEEEcCCC-
Q 019349          158 -KGSVLVYNVMEL----HSHCEI-------DAHQAPLAAIVLSSNGMYIATASEQGT------------IIRVFLVSEA-  212 (342)
Q Consensus       158 -~g~i~iwd~~~~----~~~~~~-------~~h~~~v~~i~~s~dg~~lat~s~dg~------------~irlwd~~~~-  212 (342)
                       ...|..|++...    .....+       ......-..|+|.|||.+.++-+..+.            .|.-++.... 
T Consensus        96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~  175 (353)
T 2g8s_A           96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI  175 (353)
T ss_dssp             EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred             ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC


Q ss_pred             -----------eeEEEeccCcCceeEEEEEEec-CCCcccEEEE
Q 019349          213 -----------TKSYSFRRGTYPSTIFSLSFGQ-SMQFQDILVA  244 (342)
Q Consensus       213 -----------~~~~~~~~~~~~~~v~~l~fs~-d~~~~~~l~~  244 (342)
                                 .....+..+...  ...++|+| ++.   ++++
T Consensus       176 p~~npf~~~~~~~~~i~a~G~rn--p~gl~~d~~~g~---l~~~  214 (353)
T 2g8s_A          176 PDDNPFIKESGVRAEIWSYGIRN--PQGMAMNPWSNA---LWLN  214 (353)
T ss_dssp             CTTCTTTTSTTSCTTEEEECCSE--EEEEEEETTTTE---EEEE
T ss_pred             CCCCCCcCCCCCCccEEEEcCcC--ccceEEECCCCC---EEEE

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=84.48  E-value=5.2  Score=37.42  Aligned_cols=69  Identities=10%  Similarity=0.069  Sum_probs=47.6

Q ss_pred             EeeCCCccEEEEeCCCCccEEEEEEccCCce-------------eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHS-------------HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF  207 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~-------------~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw  207 (342)
                      +..+||+.+++.+|. -+.++.++|.+....             +...+ -.-.....+|.++|+-..|---|..++ -|
T Consensus       328 v~vsPDGkyi~v~GK-LsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~~G~aYTtlfidSqvv-kW  404 (638)
T 3sbq_A          328 CNTSSDGKYFIAAGK-LSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDGRGNAYTTLFIDSQVV-KW  404 (638)
T ss_dssp             EEECTTSCEEEEECT-TSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECSSSEEEEEETTTTEEE-EE
T ss_pred             eeeCCCCCEEEEcCC-CCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECCCCceEeeeeecceEE-EE
Confidence            355788999999987 789999999874211             12222 223456788999995555556787765 79


Q ss_pred             EcCCC
Q 019349          208 LVSEA  212 (342)
Q Consensus       208 d~~~~  212 (342)
                      ++...
T Consensus       405 ni~~a  409 (638)
T 3sbq_A          405 NMEEA  409 (638)
T ss_dssp             EHHHH
T ss_pred             eccHH
Confidence            98653

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=83.96  E-value=4.1  Score=33.19  Aligned_cols=65  Identities=15%  Similarity=0.079  Sum_probs=38.8

Q ss_pred             CCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeE--------EEEEEecCCCcccEEEEEeCCCcE
Q 019349          180 APLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTI--------FSLSFGQSMQFQDILVATSSSGSL  251 (342)
Q Consensus       180 ~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v--------~~l~fs~d~~~~~~l~~~s~dg~i  251 (342)
                      ..+..++|+|+|.+.+.  .+|.+ .-.+..+.+.. .+.. . ...|        .++.|.|++.   +.++  .||.|
T Consensus        41 ~~~~~laf~P~G~LYaV--~~G~L-y~~~~~t~~~~-~W~~-s-~t~IG~~Gw~~F~a~~fD~~G~---LYav--~dG~i  109 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV--LNDKI-YKGTPPTHDND-NWMG-R-AKKIGNGGWNQFQFLFFDPNGY---LYAV--SKDKL  109 (236)
T ss_dssp             TTCSEEEECTTSCEEEE--ETTEE-EEESCCCSTTC-CHHH-H-CEEEECSCGGGCSEEEECTTSC---EEEE--ETTEE
T ss_pred             ccceeEEECCCccEEEE--eCCeE-EEECCCCCCcc-cccc-c-ccEecccccccceEEEECCCCC---EEEe--CCCEE
Confidence            36789999999997777  56654 23444332110 0100 0 1123        6789999997   5555  55888


Q ss_pred             EEEe
Q 019349          252 HVFS  255 (342)
Q Consensus       252 ~vwd  255 (342)
                      +-++
T Consensus       110 yr~~  113 (236)
T 1tl2_A          110 YKAS  113 (236)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            7665

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=83.59  E-value=23  Score=31.29  Aligned_cols=151  Identities=10%  Similarity=0.096  Sum_probs=84.4

Q ss_pred             CCeEEEEcCCCCC------C---CCCCeEEEEECCCC--cEEEEEecCC-------ceEEEEEc---C-----CeEEEEE
Q 019349           58 SSLLAIVGAGEQP------S---LSPRRLCLFNTTTG--TALRELNFLT-------SILAVRLN---K-----KRLVIVL  111 (342)
Q Consensus        58 ~~~~~~~~~g~~~------~---~~d~~i~iwd~~~~--~~~~~~~~~~-------~v~~i~~~---~-----~~~~~~~  111 (342)
                      .+.++++-.|...      .   ...-+|.+||++++  +.+..+.++.       ...++.++   +     +..+..+
T Consensus        97 ~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYIt  176 (381)
T 3q6k_A           97 CRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYIT  176 (381)
T ss_dssp             TCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEE
T ss_pred             CCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEE
Confidence            4566666555321      1   23458999999999  9999998753       35677776   1     3444444


Q ss_pred             ---CCeEEEEECCCCceeeEEeCCCC----------------CceEEEEeeCCC----ccEEEEeCCCCccEEEEEE---
Q 019349          112 ---REKTYIYDANTLAILDTIDTVPN----------------LKGLCAFSPSLN----ACFLAVPASTTKGSVLVYN---  165 (342)
Q Consensus       112 ---d~~i~i~d~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~----~~~l~~~~~~~~g~i~iwd---  165 (342)
                         ...|.+||+.+++.-+.......                ..++..++.+|+    +..|.+..- ....+.--.   
T Consensus       177 D~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~pl-ss~~ly~V~T~~  255 (381)
T 3q6k_A          177 NFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAG-SAIKVYSVNTKE  255 (381)
T ss_dssp             ETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEES-SCSEEEEEEHHH
T ss_pred             cCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEEC-CCCcEEEEEHHH
Confidence               46899999998876554421111                124555555554    445554432 111222222   


Q ss_pred             ccCCc---eeEEEeccc---CCeeEEEEC-CCCCEEEEEeCCCcEEEEEEcCC
Q 019349          166 VMELH---SHCEIDAHQ---APLAAIVLS-SNGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       166 ~~~~~---~~~~~~~h~---~~v~~i~~s-~dg~~lat~s~dg~~irlwd~~~  211 (342)
                      ++...   .+..+ +..   ..-..+++. .+|.++.+--+... |..|+..+
T Consensus       256 L~~~~~~~~v~~~-G~kg~~s~~~~~~~D~~~G~ly~~~~~~~a-I~~w~~~~  306 (381)
T 3q6k_A          256 LKQKGGKLNPELL-GNRGKYNDAIALAYDPKTKVIFFAEANTKQ-VSCWNTQK  306 (381)
T ss_dssp             HSSTTCCCCCEEE-EECCTTCCEEEEEECTTTCEEEEEESSSSE-EEEEETTS
T ss_pred             hhCcchhhceEEe-eecCCCCCcceEEEeCCCCeEEEEeccCCe-EEEEeCCC
Confidence            11211   12222 222   223345675 67777777766665 57999875

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=83.35  E-value=13  Score=37.24  Aligned_cols=37  Identities=11%  Similarity=0.075  Sum_probs=32.3

Q ss_pred             CeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349          181 PLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSF  218 (342)
Q Consensus       181 ~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~  218 (342)
                      .+.+++..++..+|.|-+.|++ +|+|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~-LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYK-LKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCE-EEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCE-EEEEECCCCCeEeee
Confidence            5677888888899999999998 599999999988765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=80.41  E-value=25  Score=29.59  Aligned_cols=179  Identities=11%  Similarity=0.125  Sum_probs=81.4

Q ss_pred             EEcCCCCEEEEEcC----Cc--------EEEEeCCCCcEEEEEee----CCEEEEEEcCCCCeEEEEcCCC-CCCCCCCe
Q 019349           14 SFNQDNSGFALSTK----DG--------FKIFDSSTGRLCYERAV----GAFSIVEMLYSSSLLAIVGAGE-QPSLSPRR   76 (342)
Q Consensus        14 ~fs~d~~~la~g~~----~g--------~~v~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~-~~~~~d~~   76 (342)
                      ....++..++.|+.    ++        +.+||+.+.+.......    .....+..   .+.+.+.||.. ......+.
T Consensus        52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~  128 (318)
T 2woz_A           52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDS  128 (318)
T ss_dssp             EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEE
T ss_pred             EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccce
Confidence            33456777777762    11        45678776643321111    11112221   34555555421 01112356


Q ss_pred             EEEEECCCCcEEEEEecCCce--EEEEEcCCeEEEEE--------CCeEEEEECCCCceeeEEeCCCCCc-eEEEEeeCC
Q 019349           77 LCLFNTTTGTALRELNFLTSI--LAVRLNKKRLVIVL--------REKTYIYDANTLAILDTIDTVPNLK-GLCAFSPSL  145 (342)
Q Consensus        77 i~iwd~~~~~~~~~~~~~~~v--~~i~~~~~~~~~~~--------d~~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~  145 (342)
                      +.++|..+++....-..+.+.  .++....+.+++..        -+.+.+||+.+.+=. .+.....+. ...+...  
T Consensus       129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~-~~~~~p~~r~~~~~~~~--  205 (318)
T 2woz_A          129 VLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWK-DLAPMKTPRSMFGVAIH--  205 (318)
T ss_dssp             EEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEE-EECCCSSCCBSCEEEEE--
T ss_pred             EEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEE-ECCCCCCCcccceEEEE--
Confidence            889999887655433333211  12333455555544        135889998876322 111111111 1222222  


Q ss_pred             CccEEEEeCCCCc---cEEEEEEccCCce--eEEEecccCCeeEEEECCCCCEEEEEeCC
Q 019349          146 NACFLAVPASTTK---GSVLVYNVMELHS--HCEIDAHQAPLAAIVLSSNGMYIATASEQ  200 (342)
Q Consensus       146 ~~~~l~~~~~~~~---g~i~iwd~~~~~~--~~~~~~h~~~v~~i~~s~dg~~lat~s~d  200 (342)
                      ++..++++|...+   ..+.+||+.+.+=  +..++.......++.+  ++++++.|+.+
T Consensus       206 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~  263 (318)
T 2woz_A          206 KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSL--AGSLYAIGGFA  263 (318)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEEEE--TTEEEEECCBC
T ss_pred             CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEEEE--CCEEEEECCee
Confidence            3456666653222   4577899877642  2122211111122222  46677777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-06
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-05
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	0.001
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.001
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.004
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.1 bits (105), Expect = 6e-06
 Identities = 22/131 (16%), Positives = 47/131 (35%), Gaps = 6/131 (4%)

Query: 77  LCLFNTTTGTALRELNFLTS-ILAVRL--NKKRLVIVLREKT-YIYDANTLAILDTIDTV 132
             L++   G   +      S I A+    N         + T  ++D      L T    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHD 267

Query: 133 PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGM 192
             + G+ + S S +   L   A     +  V++ ++      +  H   ++ + ++ +GM
Sbjct: 268 NIICGITSVSFSKSGRLLL--AGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM 325

Query: 193 YIATASEQGTI 203
            +AT S    +
Sbjct: 326 AVATGSWDSFL 336

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 4/96 (4%)

Query: 160 SVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR 219
           S  +++V E         H++ + AI    NG   AT S+  T  R+F +    +  ++ 
Sbjct: 207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYS 265

Query: 220 RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS 255
                  I S+SF +S +    L+A     + +V+ 
Sbjct: 266 HDNIICGITSVSFSKSGRL---LLAGYDDFNCNVWD 298

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.6 bits (101), Expect = 2e-05
 Identities = 15/92 (16%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 116 YIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI 175
            ++D +T   L T+    N      F       F+   +     ++ V++         +
Sbjct: 230 KMWDVSTGMCLMTLVGHDNWVRGVLFHSGGK--FIL--SCADDKTLRVWDYKNKRCMKTL 285

Query: 176 DAHQAPLAAIVLSSNGMYIATASEQGTIIRVF 207
           +AH+  + ++       Y+ T S   T ++V+
Sbjct: 286 NAHEHFVTSLDFHKTAPYVVTGSVDQT-VKVW 316

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.001
 Identities = 11/82 (13%), Positives = 18/82 (21%), Gaps = 5/82 (6%)

Query: 140 AFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE 199
             +P+ +             SV    V  L        H         S +G Y A+   
Sbjct: 24  GNTPAGDKI-----QYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 200 QGTIIRVFLVSEATKSYSFRRG 221
            G +             +    
Sbjct: 79  HGNVRIWDTTQTTHILKTTIPV 100

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 37.9 bits (86), Expect = 0.001
 Identities = 8/68 (11%), Positives = 19/68 (27%), Gaps = 6/68 (8%)

Query: 139 CAFSPSLNACFLAVPASTTKGSVLVYNVM--ELHSHCEIDAHQAPLAAIVLSSNGMYIAT 196
            A++       +A+        V +Y     +     E+  H   +  +  + +   I T
Sbjct: 13  HAWNKDRT--QIAI--CPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVT 68

Query: 197 ASEQGTII 204
                   
Sbjct: 69  CGTDRNAY 76

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 0.004
 Identities = 7/86 (8%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 170 HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS 229
               ++  H++ + ++  +  G +  +  +    +  +        +  +     S++ S
Sbjct: 256 PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLS 311

Query: 230 LSFGQSMQFQDILVATSSSGSLHVFS 255
                  ++   +V  S      V+ 
Sbjct: 312 CDISVDDKY---IVTGSGDKKATVYE 334

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.1 bits (81), Expect = 0.004
 Identities = 10/62 (16%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 178 HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ 237
           H   + A+  S++G  + +A  +G  I  + +S    +  F    + + I  +       
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGH-INSWDISTGISNRVFPDV-HATMITGIKTTSKGD 68

Query: 238 FQ 239
             
Sbjct: 69  LF 70

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.97
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.97
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.97
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.96
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.96
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.94
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.94
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.92
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.87
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.83
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.82
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.82
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.74
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.73
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.73
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.69
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.66
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.63
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.55
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.5
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.36
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.23
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.21
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.15
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.09
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.98
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.9
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.87
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	98.85
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.75
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.73
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.72
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.71
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.56
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.54
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.51
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	98.45
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.24
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.15
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.04
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.04
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	97.98
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.83
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.56
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.43
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	97.37
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.28
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.19
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.09
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.85
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.75
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	96.72
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.48
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.07
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.03
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	95.92
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	95.75
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	95.74
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.53
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	95.43
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.8
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	94.74
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	94.4
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.24
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.01
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	93.63
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	93.59
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.13
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	91.12
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	87.54
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	87.23
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	84.94
d1q47a_	495	Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]	81.09

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-35  Score=260.95  Aligned_cols=274  Identities=13%  Similarity=0.125  Sum_probs=210.9

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcE-----EEE--EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRL-----CYE--RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      .|..+|.+++|+|+|++|++|+++.++|||+.+...     ...  .+.+.+..+++.++++.+++++.       |++|
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~-------dg~i  121 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE-------ASTL  121 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES-------SSEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeec-------cccc
Confidence            467899999999999999999976689999876521     111  12355778888888888877654       8999


Q ss_pred             EEEECCCCc--EEEEEec-CCceEEEEEcCCeEEEE--E-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           78 CLFNTTTGT--ALRELNF-LTSILAVRLNKKRLVIV--L-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        78 ~iwd~~~~~--~~~~~~~-~~~v~~i~~~~~~~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      ++||+....  ....+.. ...+..+.++++...++  . ++.|++|++.+++.......+..  .+.++++++++..++
T Consensus       122 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~--~v~~l~~s~~~~~~~  199 (337)
T d1gxra_         122 SIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTD--GASCIDISNDGTKLW  199 (337)
T ss_dssp             EEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccc
Confidence            999987544  3444443 44788999988754433  3 77999999999988777665444  566777788888998


Q ss_pred             EeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEE
Q 019349          152 VPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  231 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~  231 (342)
                      +++  .+|.|++||+++++.+..+ .|..+|.+++|+|++++|++|+.||. +++||+++++.....   .+...|.+++
T Consensus       200 ~~~--~d~~v~i~d~~~~~~~~~~-~~~~~i~~l~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~---~~~~~i~~v~  272 (337)
T d1gxra_         200 TGG--LDNTVRSWDLREGRQLQQH-DFTSQIFSLGYCPTGEWLAVGMESSN-VEVLHVNKPDKYQLH---LHESCVLSLK  272 (337)
T ss_dssp             EEE--TTSEEEEEETTTTEEEEEE-ECSSCEEEEEECTTSSEEEEEETTSC-EEEEETTSSCEEEEC---CCSSCEEEEE
T ss_pred             ccc--ccccccccccccceeeccc-ccccceEEEEEcccccccceeccccc-ccccccccccccccc---ccccccceEE
Confidence            887  5899999999999887766 48899999999999999999999998 589999988875443   2456699999


Q ss_pred             EecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeC
Q 019349          232 FGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN  311 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  311 (342)
                      |+|+++   +|++++.||+|++||++..+......        +........|+|              ++++|++++.|
T Consensus       273 ~s~~g~---~l~s~s~Dg~i~iwd~~~~~~~~~~~--------~~~~v~~~~~s~--------------d~~~l~t~s~D  327 (337)
T d1gxra_         273 FAYCGK---WFVSTGKDNLLNAWRTPYGASIFQSK--------ESSSVLSCDISV--------------DDKYIVTGSGD  327 (337)
T ss_dssp             ECTTSS---EEEEEETTSEEEEEETTTCCEEEEEE--------CSSCEEEEEECT--------------TSCEEEEEETT
T ss_pred             ECCCCC---EEEEEeCCCeEEEEECCCCCEEEEcc--------CCCCEEEEEEeC--------------CCCEEEEEeCC
Confidence            999999   99999999999999998765432100        111111223444              44789999999


Q ss_pred             CcEEEEEE
Q 019349          312 GYFVEYIF  319 (342)
Q Consensus       312 g~v~~~~~  319 (342)
                      |.|++|++
T Consensus       328 ~~I~vWdl  335 (337)
T d1gxra_         328 KKATVYEV  335 (337)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999987

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.5e-35  Score=259.52  Aligned_cols=277  Identities=10%  Similarity=0.115  Sum_probs=213.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcE--EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349            8 YPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRL--CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~   85 (342)
                      +.+..++++|+|+.|+.+..+.+.+||+++.+.  ++..|.+.+..+++.++++++++.+.       |++|++||+.++
T Consensus        18 ~~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~-------dg~i~iwd~~~~   90 (311)
T d1nr0a1          18 GTAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV-------HGNVRIWDTTQT   90 (311)
T ss_dssp             TCCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEET-------TSEEEEEESSST
T ss_pred             CCeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEecccc-------CceEeeeeeecc
Confidence            356688999999999999888899999988754  44556678889999998888877664       899999999887


Q ss_pred             cEEE--EEe-cCCceEEEEEcCCe--EEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccE-EEEeCCC
Q 019349           86 TALR--ELN-FLTSILAVRLNKKR--LVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACF-LAVPAST  156 (342)
Q Consensus        86 ~~~~--~~~-~~~~v~~i~~~~~~--~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~  156 (342)
                      +...  .+. +...|.+++|+++.  +++++   +..+++|++.+++....+..+..  .+.+++++|++.+ +++++  
T Consensus        91 ~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~--~v~~v~~~~~~~~~l~sgs--  166 (311)
T d1nr0a1          91 THILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQAR--AMNSVDFKPSRPFRIISGS--  166 (311)
T ss_dssp             TCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSS--CEEEEEECSSSSCEEEEEE--
T ss_pred             ccccccccccccCcccccccccccccccccccccccccccccccccccccccccccc--ccccccccccceeeecccc--
Confidence            7543  343 45689999999875  44444   34699999999888877765544  4666677777765 55555  


Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc-----CceeEEEEE
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-----YPSTIFSLS  231 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~-----~~~~v~~l~  231 (342)
                      .||.|++||+++++....+..|..+|+++.|+|++++|++++.||. +++||..+++.+..+....     +...|.+++
T Consensus       167 ~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~-v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~  245 (311)
T d1nr0a1         167 DDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGT-IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLT  245 (311)
T ss_dssp             TTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEE
T ss_pred             cccccccccccccccccccccccccccccccCcccccccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            6899999999999999999999999999999999999999999998 4899999998888775321     345699999


Q ss_pred             EecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeC
Q 019349          232 FGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN  311 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  311 (342)
                      |+|+++   +|++|+.||+|+|||+++.+..+.......    .........|+                ++.|++++.|
T Consensus       246 ~s~~~~---~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~----~~~~~~~~~~~----------------~~~l~s~s~d  302 (311)
T d1nr0a1         246 WSPDGT---KIASASADKTIKIWNVATLKVEKTIPVGTR----IEDQQLGIIWT----------------KQALVSISAN  302 (311)
T ss_dssp             ECTTSS---EEEEEETTSEEEEEETTTTEEEEEEECCSS----GGGCEEEEEEC----------------SSCEEEEETT
T ss_pred             cCCCCC---EEEEEeCCCeEEEEECCCCcEEEEEECCCC----ccceEEEEEec----------------CCEEEEEECC
Confidence            999999   999999999999999987764331110000    00001111222                2679999999


Q ss_pred             CcEEEEEE
Q 019349          312 GYFVEYIF  319 (342)
Q Consensus       312 g~v~~~~~  319 (342)
                      |.|++|++
T Consensus       303 G~i~~wd~  310 (311)
T d1nr0a1         303 GFINFVNP  310 (311)
T ss_dssp             CCEEEEET
T ss_pred             CEEEEEeC
Confidence            99999974

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-34  Score=260.22  Aligned_cols=286  Identities=11%  Similarity=0.066  Sum_probs=208.2

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEe--------------------eCCEEEEEEcCCCCeEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERA--------------------VGAFSIVEMLYSSSLLAIV   64 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~   64 (342)
                      .|.+.|+||+|+|||++||+|+++.++|||+.+++.+....                    ...+..+++.+++++++++
T Consensus        60 ~H~~~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          60 DHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             ECSSCCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            37889999999999999999997778999999887654432                    1235667777777787776


Q ss_pred             cCCCCCCCCCCeEEEEECCCCcEEEEEec-CCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEE
Q 019349           65 GAGEQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCA  140 (342)
Q Consensus        65 ~~g~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  140 (342)
                      +.       |+.|++||..+++.+..... ...|.++.++++.  ++.+. ++.+++||+.+.........+..  ....
T Consensus       140 ~~-------dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~--~~~~  210 (388)
T d1erja_         140 AE-------DRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG--VTTV  210 (388)
T ss_dssp             ET-------TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC--EEEE
T ss_pred             cc-------ccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccc--cccc
Confidence            64       89999999999998887764 5689999998764  33344 78999999999877766654333  2333


Q ss_pred             EeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE-------ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe
Q 019349          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI-------DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  213 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~-------~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~  213 (342)
                      ....+++.++++++  .||.|++||+.+++....+       .+|..+|++++|+|++++|++|+.||. |++||+++++
T Consensus       211 ~~~~~~~~~l~~~~--~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~-i~iwd~~~~~  287 (388)
T d1erja_         211 AVSPGDGKYIAAGS--LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRS-VKLWNLQNAN  287 (388)
T ss_dssp             EECSTTCCEEEEEE--TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSE-EEEEEC----
T ss_pred             cccCCCCCeEEEEc--CCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCc-EEEEeccCCc
Confidence            33445677888877  6899999999988766554       368899999999999999999999997 5899998765


Q ss_pred             eEEEecc----------CcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccccc
Q 019349          214 KSYSFRR----------GTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEV  283 (342)
Q Consensus       214 ~~~~~~~----------~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (342)
                      .......          ..+...|.+++|+|+++   +|++|+.||+|++||+++++.....+       ++........
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~---~l~sg~~dg~i~vwd~~~~~~~~~l~-------~H~~~V~~~~  357 (388)
T d1erja_         288 NKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE---YILSGSKDRGVLFWDKKSGNPLLMLQ-------GHRNSVISVA  357 (388)
T ss_dssp             -----------CEEEEEECCSSCEEEEEECGGGC---EEEEEETTSEEEEEETTTCCEEEEEE-------CCSSCEEEEE
T ss_pred             cccccccccccceeeecccccceEEEEEECCCCC---EEEEEeCCCEEEEEECCCCcEEEEEe-------CCCCCEEEEE
Confidence            4322211          12244599999999999   99999999999999998776533211       1111111111


Q ss_pred             ccccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          284 LDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      |..        ...+.++++.|++++.||.|++|++.
T Consensus       358 ~~~--------~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         358 VAN--------GSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             ECS--------SCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             Eec--------CcccCCCCCEEEEEeCCCEEEEEeee
Confidence            111        12345566899999999999999985

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.9e-33  Score=244.20  Aligned_cols=278  Identities=14%  Similarity=0.142  Sum_probs=221.8

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      ...|..+|++|+|+|++++|++|+.|+ ++|||+.+++++...  +...+..+.+.++...++....       ++.+.+
T Consensus        13 L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~-------~~~~~~   85 (317)
T d1vyhc1          13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA-------DMTIKL   85 (317)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET-------TSCCCE
T ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc-------cccccc
Confidence            346889999999999999999999887 699999998776554  4466777788877778777664       788999


Q ss_pred             EECCCCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349           80 FNTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        80 wd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      |+....+....+. +...+..+.++++.  ++.+. |+.+++||+++++.+..+..+..  .+.++++++++.++++++ 
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-  162 (317)
T d1vyhc1          86 WDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPNQDGTLIASCS-  162 (317)
T ss_dssp             EETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEECTTSSEEEEEE-
T ss_pred             ccccccccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC--cceeeecccCCCEEEEEe-
Confidence            9998877766554 34578888887764  33344 88999999999998888876544  466677788888999888 


Q ss_pred             CCccEEEEEEccCCceeEEEecccCCeeEEEECCCC--------------------CEEEEEeCCCcEEEEEEcCCCeeE
Q 019349          156 TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNG--------------------MYIATASEQGTIIRVFLVSEATKS  215 (342)
Q Consensus       156 ~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg--------------------~~lat~s~dg~~irlwd~~~~~~~  215 (342)
                       .||.|++|++.+++....+.+|...+.+++|+|++                    .++++++.||. |++||+++++.+
T Consensus       163 -~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~~~~~~~~~~~  240 (317)
T d1vyhc1         163 -NDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKT-IKMWDVSTGMCL  240 (317)
T ss_dssp             -TTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSE-EEEEETTTTEEE
T ss_pred             -CCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCE-EEEEECCCCcEE
Confidence             68999999999999999999999999999998764                    57999999997 589999999999


Q ss_pred             EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeec
Q 019349          216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNA  295 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (342)
                      .++..+  ...|.+++|+|+++   +|++++.||+|+|||+++.+....       +.++..              .+..
T Consensus       241 ~~~~~~--~~~v~~~~~~~~~~---~l~s~~~dg~i~iwd~~~~~~~~~-------~~~h~~--------------~V~~  294 (317)
T d1vyhc1         241 MTLVGH--DNWVRGVLFHSGGK---FILSCADDKTLRVWDYKNKRCMKT-------LNAHEH--------------FVTS  294 (317)
T ss_dssp             EEEECC--SSCEEEEEECSSSS---CEEEEETTTEEEEECCTTSCCCEE-------EECCSS--------------CEEE
T ss_pred             EEEeCC--CCCEEEEEECCCCC---EEEEEECCCeEEEEECCCCcEEEE-------EcCCCC--------------CEEE
Confidence            888643  45699999999999   999999999999999987665332       111111              1222


Q ss_pred             cCCCccccEEEEEEeCCcEEEEE
Q 019349          296 FPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       296 ~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                      +.+.++++.|++++.||.|++|+
T Consensus       295 ~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         295 LDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEeC
Confidence            33344458899999999999994

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1e-32  Score=242.85  Aligned_cols=279  Identities=17%  Similarity=0.168  Sum_probs=211.3

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..|.++|++++|+|++++||+|+.|+ ++|||+.+++.+...  +...+..+.+.++.++++.++.       |+.+++|
T Consensus        52 ~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~-------d~~i~~~  124 (340)
T d1tbga_          52 RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGL-------DNICSIY  124 (340)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEET-------TCCEEEE
T ss_pred             CCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecc-------cceeecc
Confidence            46899999999999999999999887 699999999876554  4467888888888888877764       8999999


Q ss_pred             ECCCCc----EEEEEecCC-ceEEEEEcCCeEEE-EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           81 NTTTGT----ALRELNFLT-SILAVRLNKKRLVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        81 d~~~~~----~~~~~~~~~-~v~~i~~~~~~~~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      +.....    ....+..+. .........+.... .. +.....+................  .+......+...+++++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~  202 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG--DVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSS--CEEEEEECTTSSEEEEE
T ss_pred             cccccccccccceecccccccccccccccccccccccccccccccccccccccccccccce--eEeeeccccccceeEEe
Confidence            976543    333333333 33333333333333 33 77888888877665555544333  45555566667788877


Q ss_pred             CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEe
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs  233 (342)
                      +  .++.|++||+++++++.++.+|..+|++++|+|++++|++|+.||. |++||+...+.+..+....+...|.+++|+
T Consensus       203 ~--~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~-i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  279 (340)
T d1tbga_         203 A--CDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT-CRLFDLRADQELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             E--TTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             e--cCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCe-EEEEeecccccccccccccccCceEEEEEC
Confidence            7  5899999999999999999999999999999999999999999998 589999999888777555555669999999


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCc
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY  313 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~  313 (342)
                      |+++   +|++|+.||+|+|||+.+.+....       +.++..              .+..+.+.+++++|++++.||.
T Consensus       280 ~~~~---~l~~g~~dg~i~iwd~~~~~~~~~-------~~~H~~--------------~V~~l~~s~d~~~l~s~s~Dg~  335 (340)
T d1tbga_         280 KSGR---LLLAGYDDFNCNVWDALKADRAGV-------LAGHDN--------------RVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             SSSC---EEEEEETTSCEEEEETTTCCEEEE-------ECCCSS--------------CEEEEEECTTSSCEEEEETTSC
T ss_pred             CCCC---EEEEEECCCEEEEEECCCCcEEEE-------EcCCCC--------------CEEEEEEeCCCCEEEEEccCCE
Confidence            9999   999999999999999987654322       111111              1122233444478999999999


Q ss_pred             EEEEE
Q 019349          314 FVEYI  318 (342)
Q Consensus       314 v~~~~  318 (342)
                      |++|+
T Consensus       336 v~iWd  340 (340)
T d1tbga_         336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99995

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.6e-32  Score=238.85  Aligned_cols=279  Identities=13%  Similarity=0.114  Sum_probs=200.6

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE---eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER---AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      ...|..+|++++|+||+++|++|+.|+ +++||+++++.+...   +...+..+.+.+++.++ .++       .|++++
T Consensus         8 ~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~~-~~~-------~d~~v~   79 (299)
T d1nr0a2           8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLF-TVS-------WDDHLK   79 (299)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCEE-EEE-------TTTEEE
T ss_pred             cCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccceee-ccc-------ceeeEE
Confidence            357999999999999999999999887 699999998776543   33567777777766543 333       378999


Q ss_pred             EEECCCCcE----EEEEecCCceEEEEEcCCe--EEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEE
Q 019349           79 LFNTTTGTA----LRELNFLTSILAVRLNKKR--LVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAV  152 (342)
Q Consensus        79 iwd~~~~~~----~~~~~~~~~v~~i~~~~~~--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  152 (342)
                      +|+......    .....+...+.++.++++.  ++...++.+++|+...  .. .....   ....+++.+|++.++++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~-~~~~~---~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          80 VVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LT-EVPIS---YNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             EECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EE-EEECS---SCEEEEEECTTSCEEEE
T ss_pred             EeccCCcccccccccccccccccccccccccccccccccccccccccccc--cc-ccccc---ccccccccccccccccc
Confidence            999765332    1223345678889998764  3334488999999542  22 22221   23455667788889998


Q ss_pred             eCCCCccEEEEEEccCCceeE-EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc-CcCceeEEEE
Q 019349          153 PASTTKGSVLVYNVMELHSHC-EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR-GTYPSTIFSL  230 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~~~~-~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~-~~~~~~v~~l  230 (342)
                      ++  .+|.|++||+.+++... ....|..+|++++|+|++++|++++.||. |++||+.++..+..... ..+...|.++
T Consensus       154 g~--~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~-i~~~~~~~~~~~~~~~~~~~h~~~v~~l  230 (299)
T d1nr0a2         154 GG--QDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACV  230 (299)
T ss_dssp             EE--TTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSC-EEEEEGGGTTEESCCCCCCCCSSCEEEE
T ss_pred             cc--ccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccc
Confidence            87  68999999998876543 34579999999999999999999999998 58999988765543322 1235569999


Q ss_pred             EEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe
Q 019349          231 SFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY  310 (342)
Q Consensus       231 ~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  310 (342)
                      +|+|+++   +|++++.||+|+|||++.........     ........+..+.              .+++++|++++.
T Consensus       231 ~~s~~~~---~l~sgs~dg~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~--------------~~~~~~l~s~s~  288 (299)
T d1nr0a2         231 SWSPDNV---RLATGSLDNSVIVWNMNKPSDHPIII-----KGAHAMSSVNSVI--------------WLNETTIVSAGQ  288 (299)
T ss_dssp             EECTTSS---EEEEEETTSCEEEEETTCTTSCCEEE-----TTSSTTSCEEEEE--------------EEETTEEEEEET
T ss_pred             ccccccc---ceEEEcCCCEEEEEECCCCCcceEEE-----ecCCCCCcEEEEE--------------ECCCCEEEEEeC
Confidence            9999999   99999999999999998765432100     0000111111111              123378999999


Q ss_pred             CCcEEEEEEe
Q 019349          311 NGYFVEYIFS  320 (342)
Q Consensus       311 dg~v~~~~~~  320 (342)
                      ||.|++|++.
T Consensus       289 D~~i~iWdl~  298 (299)
T d1nr0a2         289 DSNIKFWNVP  298 (299)
T ss_dssp             TSCEEEEECC
T ss_pred             CCEEEEEecc
Confidence            9999999873

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.6e-32  Score=240.16  Aligned_cols=239  Identities=19%  Similarity=0.232  Sum_probs=192.2

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE----EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC----YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      +.|..+|++++|+|+|++||+|+.|+ +++||+.+++..    +..+...+..+.+.++++.++.++.+     .++.++
T Consensus        55 ~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~-----~~~~~~  129 (311)
T d1nr0a1          55 TEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEG-----RERFGH  129 (311)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECC-----SSCSEE
T ss_pred             cCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccc-----cccccc
Confidence            45788999999999999999998887 699999887532    23345678888888888888888763     467899


Q ss_pred             EEECCCCcEEEEEec-CCceEEEEEcCCe--EEE-EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           79 LFNTTTGTALRELNF-LTSILAVRLNKKR--LVI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        79 iwd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      +||+.+++.+..+.. ...|.+++|+++.  +++ ++ |+.|++||+++++....+..+..  .+.++.++|++.+++++
T Consensus       130 v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~--~i~~v~~~p~~~~l~~~  207 (311)
T d1nr0a1         130 VFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK--FVHSVRYNPDGSLFAST  207 (311)
T ss_dssp             EEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSS--CEEEEEECTTSSEEEEE
T ss_pred             ccccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccc--cccccccCccccccccc
Confidence            999999988777654 4579999998764  333 33 78999999999988887765544  57778888899999988


Q ss_pred             CCCCccEEEEEEccCCceeEEEe-------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC-ce
Q 019349          154 ASTTKGSVLVYNVMELHSHCEID-------AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY-PS  225 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~-------~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~-~~  225 (342)
                      +  .||.|++||+.+++.+..++       +|..+|++++|+|+|++|+||+.||+ |+|||+++++++.++..+.. ..
T Consensus       208 ~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~-v~iwd~~t~~~~~~l~~~~~~~~  284 (311)
T d1nr0a1         208 G--GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKT-IKIWNVATLKVEKTIPVGTRIED  284 (311)
T ss_dssp             E--TTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTTEEEEEEECCSSGGG
T ss_pred             c--ccccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCe-EEEEECCCCcEEEEEECCCCccc
Confidence            7  58999999999887766553       68899999999999999999999997 58999999999988865432 22


Q ss_pred             eEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          226 TIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       226 ~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      .+.++.|  ++.   +|++++.||.|++||++
T Consensus       285 ~~~~~~~--~~~---~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         285 QQLGIIW--TKQ---ALVSISANGFINFVNPE  311 (311)
T ss_dssp             CEEEEEE--CSS---CEEEEETTCCEEEEETT
T ss_pred             eEEEEEe--cCC---EEEEEECCCEEEEEeCC
Confidence            3444554  455   69999999999999974

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=9.2e-32  Score=242.05  Aligned_cols=236  Identities=13%  Similarity=0.097  Sum_probs=184.2

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEE--E--EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLC--Y--ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .+||+|++|+|||++||+|+.++ ++|||+++++..  .  ..|.+.+..+++.+++++++.++.       |++|++||
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~-------D~~i~vWd   79 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT-------DRNAYVWT   79 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEET-------TSCEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEEC-------CCeEEEEe
Confidence            47899999999999999999887 699999877532  2  334578888899888898887764       89999999


Q ss_pred             CCCCcEEEEEec---CCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEE--eCCCCCceEEEEeeCCCccEEEEe
Q 019349           82 TTTGTALRELNF---LTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTI--DTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        82 ~~~~~~~~~~~~---~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      +.++........   ...|.+++|+|+.  +++++ ++.+++|++.........  ....+...+.+++++|++.+|+++
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~  159 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG  159 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEE
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecc
Confidence            988776555433   4579999998765  44444 789999998765432222  223344567888899999999988


Q ss_pred             CCCCccEEEEEEccCC------------------ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeE
Q 019349          154 ASTTKGSVLVYNVMEL------------------HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKS  215 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~------------------~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~  215 (342)
                      +  .||+|++||+...                  +.+.....|...|.+++|+|+|++|++++.||+ |++||+.+++.+
T Consensus       160 s--~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~-i~iwd~~~~~~~  236 (371)
T d1k8kc_         160 S--CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDST-VCLADADKKMAV  236 (371)
T ss_dssp             E--TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTE-EEEEEGGGTTEE
T ss_pred             c--cCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCc-ceEEeeecccce
Confidence            7  6899999997543                  244556789999999999999999999999997 589999999998


Q ss_pred             EEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          216 YSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       216 ~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      ..+..+  ..+|.+++|+||++   +|++| .|+.+++|..+.
T Consensus       237 ~~~~~~--~~~v~s~~fs~d~~---~la~g-~d~~~~~~~~~~  273 (371)
T d1k8kc_         237 ATLASE--TLPLLAVTFITESS---LVAAG-HDCFPVLFTYDS  273 (371)
T ss_dssp             EEEECS--SCCEEEEEEEETTE---EEEEE-TTSSCEEEEEET
T ss_pred             eeeecc--cccceeeeecCCCC---EEEEE-cCCceEEEEeeC
Confidence            888643  45699999999998   66655 477777776543

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.2e-31  Score=234.41  Aligned_cols=232  Identities=11%  Similarity=0.132  Sum_probs=190.0

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc--EEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR--LCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .+...|.+++|+||+++|++|+.++ +++||+....  .....  +...+..+.+.++...++.++.       ++.|++
T Consensus        95 ~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~-------d~~i~~  167 (337)
T d1gxra_          95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCS-------DGNIAV  167 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEET-------TSCEEE
T ss_pred             CCCCcEEEEEEcCCCCEEEEeeccccccccccccccccccccccccccccccccccccccccccccc-------cccccc
Confidence            4677899999999999999998887 6999987553  33332  3345666677777777766654       899999


Q ss_pred             EECCCCcEEEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCC
Q 019349           80 FNTTTGTALRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAS  155 (342)
Q Consensus        80 wd~~~~~~~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  155 (342)
                      ||+.++++..... +...|.+++++++.  ++++. |+.+++||+++++.+..+..   ...+.+++++|++.++++++ 
T Consensus       168 ~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~---~~~i~~l~~~~~~~~l~~~~-  243 (337)
T d1gxra_         168 WDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLAVGM-  243 (337)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEEEEE-
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccceeeccccc---ccceEEEEEcccccccceec-
Confidence            9999998877665 35689999998763  44444 88999999999988877753   34577888888888999887 


Q ss_pred             CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC
Q 019349          156 TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  235 (342)
Q Consensus       156 ~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d  235 (342)
                       .+|.|++||+.+++.. ....|..+|++++|+|+|++|++|+.||. |++||+.+++.+..+.   +...|.+++|+|+
T Consensus       244 -~d~~i~i~d~~~~~~~-~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~-i~iwd~~~~~~~~~~~---~~~~v~~~~~s~d  317 (337)
T d1gxra_         244 -ESSNVEVLHVNKPDKY-QLHLHESCVLSLKFAYCGKWFVSTGKDNL-LNAWRTPYGASIFQSK---ESSSVLSCDISVD  317 (337)
T ss_dssp             -TTSCEEEEETTSSCEE-EECCCSSCEEEEEECTTSSEEEEEETTSE-EEEEETTTCCEEEEEE---CSSCEEEEEECTT
T ss_pred             -cccccccccccccccc-cccccccccceEEECCCCCEEEEEeCCCe-EEEEECCCCCEEEEcc---CCCCEEEEEEeCC
Confidence             5899999999988764 55689999999999999999999999997 5899999999887764   3456999999999


Q ss_pred             CCcccEEEEEeCCCcEEEEec
Q 019349          236 MQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       236 ~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      ++   +|++++.||+|+|||+
T Consensus       318 ~~---~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         318 DK---YIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SC---EEEEEETTSCEEEEEE
T ss_pred             CC---EEEEEeCCCeEEEEEE
Confidence            99   9999999999999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3e-29  Score=225.48  Aligned_cols=238  Identities=13%  Similarity=0.181  Sum_probs=189.3

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .+...|++++|+|++++|++|+.++ +++||...++......  ...+..+.+......++..+.       ++.+++||
T Consensus       119 ~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~-------~~~i~~~d  191 (388)
T d1erja_         119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG-------DRTVRIWD  191 (388)
T ss_dssp             CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET-------TSEEEEEE
T ss_pred             CCCCCEEEEEECCCCCcceeccccccccccccccccccccccccccccccccccccccccccccc-------ceeeeeee
Confidence            4667899999999999999999888 6999999987766553  456777777777777766654       89999999


Q ss_pred             CCCCcEEEEEecCCceEEEEEcC-C--eEEEEE-CCeEEEEECCCCceeeEEeCC-----CCCceEEEEeeCCCccEEEE
Q 019349           82 TTTGTALRELNFLTSILAVRLNK-K--RLVIVL-REKTYIYDANTLAILDTIDTV-----PNLKGLCAFSPSLNACFLAV  152 (342)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~~-~--~~~~~~-d~~i~i~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~  152 (342)
                      .++...............+.+.+ +  .++.++ |+.|++|++.+++.+..+...     .+...+.++.+++++.+|++
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s  271 (388)
T d1erja_         192 LRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS  271 (388)
T ss_dssp             TTTTEEEEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEE
T ss_pred             ccccccccccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEE
Confidence            99998888877777666666644 3  344444 889999999998877776432     22346788888899999998


Q ss_pred             eCCCCccEEEEEEccCCc------------eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349          153 PASTTKGSVLVYNVMELH------------SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR  220 (342)
Q Consensus       153 ~~~~~~g~i~iwd~~~~~------------~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~  220 (342)
                      ++  .||.|++||+.+++            .......|...|.+++|+|+|++|++|+.||+ |++||+++++++.++..
T Consensus       272 ~~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~-i~vwd~~~~~~~~~l~~  348 (388)
T d1erja_         272 GS--LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG-VLFWDKKSGNPLLMLQG  348 (388)
T ss_dssp             EE--TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSE-EEEEETTTCCEEEEEEC
T ss_pred             EE--CCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCE-EEEEECCCCcEEEEEeC
Confidence            88  58999999987553            23445678999999999999999999999997 58999999999999864


Q ss_pred             CcCceeEEEEE------EecCCCcccEEEEEeCCCcEEEEecC
Q 019349          221 GTYPSTIFSLS------FGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       221 ~~~~~~v~~l~------fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      +  ...|.+++      |+|++.   +||+|+.||+|+||+++
T Consensus       349 H--~~~V~~~~~~~~~~~spd~~---~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         349 H--RNSVISVAVANGSSLGPEYN---VFATGSGDCKARIWKYK  386 (388)
T ss_dssp             C--SSCEEEEEECSSCTTCTTCE---EEEEEETTSEEEEEEEE
T ss_pred             C--CCCEEEEEEecCcccCCCCC---EEEEEeCCCEEEEEeee
Confidence            3  45688886      467888   99999999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.4e-29  Score=222.23  Aligned_cols=238  Identities=15%  Similarity=0.143  Sum_probs=186.3

Q ss_pred             CCCeEEEEEcC--CCCEEEEEcCCc-EEEEeCCCCcE----E------EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCC
Q 019349            7 SYPVFFVSFNQ--DNSGFALSTKDG-FKIFDSSTGRL----C------YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLS   73 (342)
Q Consensus         7 ~~~V~~l~fs~--d~~~la~g~~~g-~~v~d~~~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~   73 (342)
                      ..+|++++|+|  ++.+||+|+.|| ++|||+..++.    .      +..+.+++..+.+.+++..++.++.+     .
T Consensus        63 ~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~-----~  137 (325)
T d1pgua1          63 SSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG-----R  137 (325)
T ss_dssp             TSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC-----S
T ss_pred             CCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc-----c
Confidence            46799999998  567999998887 69999865421    1      12234677888888888888888764     5


Q ss_pred             CCeEEEEECCCCcEEEEEec-CCceEEEEEcCCe--EEE-EE-CCeEEEEECCCCceeeEEeCC-CCCceEEEEeeCCC-
Q 019349           74 PRRLCLFNTTTGTALRELNF-LTSILAVRLNKKR--LVI-VL-REKTYIYDANTLAILDTIDTV-PNLKGLCAFSPSLN-  146 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~--~~~-~~-d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~-  146 (342)
                      ++.+++|+..+++++..+.. ...|.+++|+++.  +++ ++ |+.+++||+.+.+....+..+ .+...+.+++++|+ 
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~  217 (325)
T d1pgua1         138 DNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS  217 (325)
T ss_dssp             SCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTT
T ss_pred             cceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeecccc
Confidence            78899999999999988764 5589999998763  333 44 889999999988877776553 33445777888875 


Q ss_pred             ccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEEC---CCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC
Q 019349          147 ACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLS---SNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s---~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~  223 (342)
                      +.++++++  .||.|++||+++++.+..+.+|..++.++.|+   |||++|++++.|++ |+|||+++++.+..+..+.+
T Consensus       218 ~~~l~s~~--~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~-i~iwd~~~~~~~~~~~~~~~  294 (325)
T d1pgua1         218 GEFVITVG--SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADAT-IRVWDVTTSKCVQKWTLDKQ  294 (325)
T ss_dssp             CCEEEEEE--TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSE-EEEEETTTTEEEEEEECCTT
T ss_pred             ceeccccc--cccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCe-EEEEECCCCCEEEEEEecCC
Confidence            56777777  58999999999999999999999888777776   78999999999997 69999999999988865544


Q ss_pred             ceeEE--EEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349          224 PSTIF--SLSFGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       224 ~~~v~--~l~fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      ...+.  ++.+++++    +|+++|.||+|+|||+
T Consensus       295 ~~~~~~~~~~~~~~~----~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         295 QLGNQQVGVVATGNG----RIISLSLDGTLNFYEL  325 (325)
T ss_dssp             CGGGCEEEEEEEETT----EEEEEETTSCEEEEET
T ss_pred             cccCeEEEEEECCCC----EEEEEECCCEEEEEEC
Confidence            33333  44444444    7999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=2e-28  Score=212.08  Aligned_cols=235  Identities=14%  Similarity=0.171  Sum_probs=191.0

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ..+..+|.+++|+|++.+++++..++ +.+|+....+.....  +...+....+.++.+.++..+.       |+.+++|
T Consensus        56 ~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------d~~~~~~  128 (317)
T d1vyhc1          56 KGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASR-------DKTIKMW  128 (317)
T ss_dssp             CCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEEEEEECSSSSEEEEEET-------TSEEEEE
T ss_pred             eCCCCcEEEEeeecccccccccccccccccccccccccccccccccccceeeeccCCCceEEeecc-------CcceeEe
Confidence            35678999999999999999888776 588888777655433  3355666777777788776664       8999999


Q ss_pred             ECCCCcEEEEEec-CCceEEEEEcCCeEEE--EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC----------
Q 019349           81 NTTTGTALRELNF-LTSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN----------  146 (342)
Q Consensus        81 d~~~~~~~~~~~~-~~~v~~i~~~~~~~~~--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~----------  146 (342)
                      |+++++.+..+.. ...+.+++++++...+  ++ |+.|++|++.+++.+..+..+...  +.+++..++          
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~  206 (317)
T d1vyhc1         129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV--VECISWAPESSYSSISEAT  206 (317)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC--EEEEEECCSCGGGGGGGCC
T ss_pred             ecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCC--ceEEEEeeccccceeeccc
Confidence            9999999888764 4578999998865433  33 889999999999888887655443  333333322          


Q ss_pred             ----------ccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE
Q 019349          147 ----------ACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY  216 (342)
Q Consensus       147 ----------~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~  216 (342)
                                +..+++++  .||.|++||+.+++++.++.+|..+|++++|+|++++|++|+.||+ |++||+++++.+.
T Consensus       207 ~~~~~~~~~~~~~~~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~  283 (317)
T d1vyhc1         207 GSETKKSGKPGPFLLSGS--RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKT-LRVWDYKNKRCMK  283 (317)
T ss_dssp             SCC-------CCEEEEEE--TTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTE-EEEECCTTSCCCE
T ss_pred             cceeeeeccCCceeEecc--CCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCe-EEEEECCCCcEEE
Confidence                      33566665  6899999999999999999999999999999999999999999997 5899999999999


Q ss_pred             EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          217 SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       217 ~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      .+..+  ...|++++|+|+++   +|++|+.||+|+|||
T Consensus       284 ~~~~h--~~~V~~~~~s~~~~---~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         284 TLNAH--EHFVTSLDFHKTAP---YVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEECC--SSCEEEEEECSSSS---CEEEEETTSEEEEEC
T ss_pred             EEcCC--CCCEEEEEEcCCCC---EEEEEeCCCeEEEeC
Confidence            88643  55799999999999   999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.5e-28  Score=215.47  Aligned_cols=280  Identities=14%  Similarity=0.183  Sum_probs=189.0

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .+.|...|.+ +++++|++||+|+.|+ ++|||+.+++++.....  +.+..+.+  +++.++.++.       |+++++
T Consensus        12 l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~--~~~~l~s~s~-------D~~~~~   81 (342)
T d2ovrb2          12 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQM--RDNIIISGST-------DRTLKV   81 (342)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEE--ETTEEEEEET-------TSCEEE
T ss_pred             ECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEe--CCCcccccee-------cccccc
Confidence            3478888865 4666889999999887 69999999988766544  44544444  5566665553       788888


Q ss_pred             EECCCCcEEEEEecCC-ceEEEEE----------------------------------------cCCeEEEEE-CCeEEE
Q 019349           80 FNTTTGTALRELNFLT-SILAVRL----------------------------------------NKKRLVIVL-REKTYI  117 (342)
Q Consensus        80 wd~~~~~~~~~~~~~~-~v~~i~~----------------------------------------~~~~~~~~~-d~~i~i  117 (342)
                      |+.............. .+.....                                        ....++... ++.|++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~  161 (342)
T d2ovrb2          82 WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKV  161 (342)
T ss_dssp             EETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEE
T ss_pred             cccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEE
Confidence            8877655443332211 1221111                                        122233333 677788


Q ss_pred             EECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEE
Q 019349          118 YDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATA  197 (342)
Q Consensus       118 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~  197 (342)
                      ||....+.+..+..+..  ....++++  +..+++++  .||.|++||++.++++..+.+|...+.++++++  ++|++|
T Consensus       162 ~d~~~~~~~~~~~~~~~--~~~~~~~~--~~~l~s~~--~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~  233 (342)
T d2ovrb2         162 WDPETETCLHTLQGHTN--RVYSLQFD--GIHVVSGS--LDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSG  233 (342)
T ss_dssp             EEGGGTEEEEEECCCSS--CEEEEEEC--SSEEEEEE--TTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEE
T ss_pred             eecccceeeEEEcCccc--ccccccCC--CCEEEEEe--CCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEE
Confidence            88777776666654433  34444443  55788877  689999999999999999999999999888765  699999


Q ss_pred             eCCCcEEEEEEcCCCeeEEEeccCc-CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccc
Q 019349          198 SEQGTIIRVFLVSEATKSYSFRRGT-YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSIL  276 (342)
Q Consensus       198 s~dg~~irlwd~~~~~~~~~~~~~~-~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~  276 (342)
                      +.||+ |++||+...+....+.... +...+.+++|+  +.   ++++++.||+|+|||+++++..+..      .....
T Consensus       234 s~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~s~s~Dg~i~iwd~~tg~~i~~~------~~~~~  301 (342)
T d2ovrb2         234 NADST-VKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KN---FVITSSDDGTVKLWDLKTGEFIRNL------VTLES  301 (342)
T ss_dssp             ETTSC-EEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SS---EEEEEETTSEEEEEETTTCCEEEEE------EECTT
T ss_pred             cCCCE-EEEEecccccccccccccceeeeceeecccC--CC---eeEEEcCCCEEEEEECCCCCEEEEE------ecccC
Confidence            99998 5899999988877775432 23346666654  55   8999999999999999877643310      00000


Q ss_pred             cccccccccccccceeeeccCCCccccEEEEEEeCCc----EEEEEEecC
Q 019349          277 PESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGY----FVEYIFSIN  322 (342)
Q Consensus       277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~----v~~~~~~~~  322 (342)
                                ..+...+..+.+.+++..|++++.||+    +++|+++.+
T Consensus       302 ----------~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~~  341 (342)
T d2ovrb2         302 ----------GGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD  341 (342)
T ss_dssp             ----------GGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred             ----------CCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCCC
Confidence                      011222333444555578889998995    899988753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.2e-29  Score=221.40  Aligned_cols=277  Identities=11%  Similarity=0.111  Sum_probs=188.8

Q ss_pred             CeEEEEEcCCCCEEEEEcCCcE--EEEeCCCCc--EEEEE--ee-CCEEEEEEcCCC--CeEEEEcCCCCCCCCCCeEEE
Q 019349            9 PVFFVSFNQDNSGFALSTKDGF--KIFDSSTGR--LCYER--AV-GAFSIVEMLYSS--SLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g~--~v~d~~~~~--~~~~~--~~-~~~~~~~~~~~~--~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .+.+++|+|+++.|+.++.+..  +.|+....+  .....  +. ..+..+.+.+..  .+++..+       .|++|+|
T Consensus        19 ~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs-------~Dg~i~i   91 (325)
T d1pgua1          19 FTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGD-------ESGKVIV   91 (325)
T ss_dssp             CCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEE-------TTSEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEe-------CCCCEEE
Confidence            5679999999999998877764  556543332  22222  22 357778887644  4444443       4899999


Q ss_pred             EECCCCcEEEE--------E-ecCCceEEEEEcCCe--EEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCC
Q 019349           80 FNTTTGTALRE--------L-NFLTSILAVRLNKKR--LVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSL  145 (342)
Q Consensus        80 wd~~~~~~~~~--------~-~~~~~v~~i~~~~~~--~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~  145 (342)
                      ||+..++....        + .+..+|.+++|+++.  +++++   ++.+++|+..+++.+..+..+..  .+.++++++
T Consensus        92 Wd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~  169 (325)
T d1pgua1          92 WGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ--RINACHLKQ  169 (325)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS--CEEEEEECS
T ss_pred             eeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc--ccccccccc
Confidence            99876543211        1 134589999998864  44444   55899999999998888866554  455566666


Q ss_pred             CccE-EEEeCCCCccEEEEEEccCCceeEEE---ecccCCeeEEEECCC-CCEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349          146 NACF-LAVPASTTKGSVLVYNVMELHSHCEI---DAHQAPLAAIVLSSN-GMYIATASEQGTIIRVFLVSEATKSYSFRR  220 (342)
Q Consensus       146 ~~~~-l~~~~~~~~g~i~iwd~~~~~~~~~~---~~h~~~v~~i~~s~d-g~~lat~s~dg~~irlwd~~~~~~~~~~~~  220 (342)
                      ++.. +++++  .||.|++||+...+....+   ..|...|++++|+|+ +.+|++++.||. |++||+++++.+..+..
T Consensus       170 ~~~~~~~~~~--~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~-i~iwd~~~~~~~~~l~~  246 (325)
T d1pgua1         170 SRPMRSMTVG--DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRK-ISCFDGKSGEFLKYIED  246 (325)
T ss_dssp             SSSCEEEEEE--TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCC-EEEEETTTCCEEEECCB
T ss_pred             cccceEEEee--cccccccccccccccceecccccCCCCccEEeeeccccceeccccccccc-eeeeeeccccccccccc
Confidence            6554 44555  5899999999888765554   467788999999996 689999999998 58999999999988864


Q ss_pred             CcCc--eeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCC
Q 019349          221 GTYP--STIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPA  298 (342)
Q Consensus       221 ~~~~--~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (342)
                      +..+  ..+.+++| ||++   +|++++.|++|+|||+++++..+.......   ..........|.             
T Consensus       247 ~~~~v~~~~~s~~~-~dg~---~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------------  306 (325)
T d1pgua1         247 DQEPVQGGIFALSW-LDSQ---KFATVGADATIRVWDVTTSKCVQKWTLDKQ---QLGNQQVGVVAT-------------  306 (325)
T ss_dssp             TTBCCCSCEEEEEE-SSSS---EEEEEETTSEEEEEETTTTEEEEEEECCTT---CGGGCEEEEEEE-------------
T ss_pred             cccccccceeeeec-cCCC---EEEEEeCCCeEEEEECCCCCEEEEEEecCC---cccCeEEEEEEC-------------
Confidence            3221  12444444 6787   999999999999999987664331100000   000000111121             


Q ss_pred             CccccEEEEEEeCCcEEEEEE
Q 019349          299 GVKRASVSVITYNGYFVEYIF  319 (342)
Q Consensus       299 ~~~~~~l~~~~~dg~v~~~~~  319 (342)
                        .+.+|++++.||.|++|++
T Consensus       307 --~~~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         307 --GNGRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             --ETTEEEEEETTSCEEEEET
T ss_pred             --CCCEEEEEECCCEEEEEEC
Confidence              1257999999999999974

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2e-27  Score=203.63  Aligned_cols=279  Identities=13%  Similarity=0.161  Sum_probs=194.9

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .+.+...|+|++|  ||++||+|+.|+ ++|||+++++.+.....+.-.+.++.+++++++.++.       |+.|++|+
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~~~~~l~s~s~-------D~~i~~~~   81 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSS-------DSTVRVWD   81 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEECCSSEEEEEET-------TSCEEEEE
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeecccceeecccc-------cccccccc
Confidence            3456778998775  789999999888 6999999998877665444444566678887776654       89999999


Q ss_pred             CCCCcEEEEEecCCc-eEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEE-eCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349           82 TTTGTALRELNFLTS-ILAVRLNKKRLVIVL-REKTYIYDANTLAILDTI-DTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (342)
Q Consensus        82 ~~~~~~~~~~~~~~~-v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  158 (342)
                      +.++........... ..........++.+. ++.+.+|+.......... ....+...+.+..+.++  .+++++  .|
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~s--~d  157 (293)
T d1p22a2          82 VNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK--YIVSAS--GD  157 (293)
T ss_dssp             SSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT--EEEEEE--TT
T ss_pred             cccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceeccc--cccccc--CC
Confidence            999988877765543 333444444555555 789999999876533222 22233344555555544  455555  58


Q ss_pred             cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCc
Q 019349          159 GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQF  238 (342)
Q Consensus       159 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~  238 (342)
                      +.|++||+.+++.+..+.+|...|..+.++  +.+|++++.||+ |++||+++++.+..+...  ...+.  .+++++. 
T Consensus       158 ~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~--~~~v~--~~~~~~~-  229 (293)
T d1p22a2         158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNT-IRLWDIECGACLRVLEGH--EELVR--CIRFDNK-  229 (293)
T ss_dssp             SEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSC-EEEEETTTCCEEEEECCC--SSCEE--EEECCSS-
T ss_pred             CceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCE-EEEEecccceeeeeeccc--ceeee--eccccce-
Confidence            999999999999999999999999888775  568999999998 589999999988877533  33354  4567777 


Q ss_pred             ccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEE
Q 019349          239 QDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYI  318 (342)
Q Consensus       239 ~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~  318 (342)
                        +|++++.||+|++||+............ ..+..+           ..|...+..+.+  ++++|+++|.||.|++|+
T Consensus       230 --~l~sg~~dg~i~iwd~~~~~~~~~~~~~-~~~~~~-----------~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         230 --RIVSGAYDGKIKVWDLVAALDPRAPAGT-LCLRTL-----------VEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             --EEEEEETTSCEEEEEHHHHTSTTSCTTT-TEEEEE-----------CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             --EEEEEcCCCEEEEEECCCCccccccCCc-eeeEEe-----------cCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence              9999999999999998765543321110 000000           111111122222  236799999999999995

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=5.9e-28  Score=212.74  Aligned_cols=274  Identities=11%  Similarity=0.125  Sum_probs=190.2

Q ss_pred             CCCCCCCe-EEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            3 NQSSSYPV-FFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         3 ~~~~~~~V-~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      +..|...| +|++|  ++++|++|+.|+ ++|||+.+++.+....  .+.+..+.+.+ .+.++.++       .|++|+
T Consensus         8 L~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~-~~~l~s~s-------~D~~i~   77 (355)
T d1nexb2           8 LRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAH-GGILVSGS-------TDRTVR   77 (355)
T ss_dssp             EECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEET-TTEEEEEE-------TTCCEE
T ss_pred             ECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcC-CCEEEEEe-------cccccc
Confidence            34677765 66666  578999999887 6999999998776654  46677777754 34555444       489999


Q ss_pred             EEECCCCcEEEEEecCC---ceEEEEEcCCeEEE--EE-CCeEEEEECCCCceeeEEeCCC-------------------
Q 019349           79 LFNTTTGTALRELNFLT---SILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVP-------------------  133 (342)
Q Consensus        79 iwd~~~~~~~~~~~~~~---~v~~i~~~~~~~~~--~~-d~~i~i~d~~~~~~~~~~~~~~-------------------  133 (342)
                      +|+....+.........   ......+.++...+  ++ |+.|++||+.+...........                   
T Consensus        78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (355)
T d1nexb2          78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVL  157 (355)
T ss_dssp             EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEE
T ss_pred             cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeee
Confidence            99999988877665433   33445556665433  33 8899999998765433221110                   


Q ss_pred             --CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCC
Q 019349          134 --NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSE  211 (342)
Q Consensus       134 --~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~  211 (342)
                        +...+....  +++..++.+.  .++.|++||+.+++.+....++...+.++.|+|++.++++++.||+ |++||+++
T Consensus       158 ~~~~~~v~~~~--~~~~~~~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-i~i~d~~~  232 (355)
T d1nexb2         158 RGHMASVRTVS--GHGNIVVSGS--YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLEN  232 (355)
T ss_dssp             ECCSSCEEEEE--EETTEEEEEE--TTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSC-EEEEETTT
T ss_pred             eeccccccccc--cccceeeeec--ccceeeeeecccccceeeeeccccccccccccccceeeecccccce-EEeeeccc
Confidence              011122233  3345777766  5899999999999999999999999999999999999999999998 58999999


Q ss_pred             CeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccce
Q 019349          212 ATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHV  291 (342)
Q Consensus       212 ~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (342)
                      +..+..+..+  ...|.+++|++  +   +|++++.||+|++||++......         ...........+       
T Consensus       233 ~~~~~~~~~h--~~~v~~~~~~~--~---~l~~~~~dg~i~iwd~~~~~~~~---------~~~~~~~~~~~~-------  289 (355)
T d1nexb2         233 GELMYTLQGH--TALVGLLRLSD--K---FLVSAAADGSIRGWDANDYSRKF---------SYHHTNLSAITT-------  289 (355)
T ss_dssp             CCEEEEECCC--SSCCCEEEECS--S---EEEEECTTSEEEEEETTTCCEEE---------EEECTTCCCCCE-------
T ss_pred             cccccccccc--ccccccccccc--c---eeeeeecccccccccccccceec---------ccccCCceEEEE-------
Confidence            9998888643  55688898874  5   89999999999999997654311         111111111111       


Q ss_pred             eeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          292 LRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       292 ~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                             .+.++.++++++||.|++|++..
T Consensus       290 -------~~~~~~~l~~g~d~~i~vwd~~t  312 (355)
T d1nexb2         290 -------FYVSDNILVSGSENQFNIYNLRS  312 (355)
T ss_dssp             -------EEECSSEEEEEETTEEEEEETTT
T ss_pred             -------EcCCCCEEEEEeCCEEEEEECCC
Confidence                   11225677788899999998753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=4.6e-28  Score=209.22  Aligned_cols=267  Identities=14%  Similarity=0.134  Sum_probs=188.0

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEE
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFN   81 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd   81 (342)
                      .+.|..+|++++|+|    |++|+.|+ +++||+.++.   ..|...+..+.+..+ ..++.++       .|+++++|+
T Consensus         9 l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~~---~~h~~~V~~~~~~~~-~~~~s~s-------~D~~v~~w~   73 (287)
T d1pgua2           9 ISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMH---QDHSNLIVSLDNSKA-QEYSSIS-------WDDTLKVNG   73 (287)
T ss_dssp             ECCCSSCEEEEETTT----TEEEETTSCEEETTTTEEE---CCCCSCEEEEECCST-TCCEEEE-------TTTEEEETT
T ss_pred             ECCCCCceEEEEECc----EEEEeCCCeEEEEECCCCC---CCCCCCEEEEEecCC-CeEEEEe-------ecccccccc
Confidence            457999999999998    88888887 6999987643   234455655554433 3444444       489999999


Q ss_pred             CCCCcEEEEEecCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCcc
Q 019349           82 TTTGTALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKG  159 (342)
Q Consensus        82 ~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g  159 (342)
                      ..+      .++...+..+.++++...++.  ++.+.+|+..+++.+..+....   ...++++++  ..+++++. .++
T Consensus        74 ~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~--~~~~v~~~-~~~  141 (287)
T d1pgua2          74 ITK------HEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNS---PGSAVSLSQ--NYVAVGLE-EGN  141 (287)
T ss_dssp             EEE------EECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSS---CEEEEEECS--SEEEEEET-TTS
T ss_pred             ccc------cccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccc---eeeeeeccC--cceeeecc-ccc
Confidence            643      335566778888877655544  7799999999998888876543   245566554  46666553 456


Q ss_pred             EEEEEEccCCceeEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCC-
Q 019349          160 SVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ-  237 (342)
Q Consensus       160 ~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~-  237 (342)
                      .|++|++...+....+. .|..++++++|+|+|.+|++|+.||. |++||+.+++.+..... .+...|.+++|+|++. 
T Consensus       142 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~-i~i~d~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~  219 (287)
T d1pgua2         142 TIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGK-ILLYDLQSREVKTSRWA-FRTSKINAISWKPAEKG  219 (287)
T ss_dssp             CEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTTTEEEECCSC-CCSSCEEEEEECCCC--
T ss_pred             eeeeeeccccceeeeeeeccCCceeEEEeccCcccccccccccc-ccceeeccccccccccc-ccccccceeeecccccc
Confidence            89999998766555544 57889999999999999999999998 48999999887654322 3456799999987531 


Q ss_pred             ------cccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeC
Q 019349          238 ------FQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYN  311 (342)
Q Consensus       238 ------~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d  311 (342)
                            -.++|++|+.|++|+|||++.+.+..      ..+.++........|++              + .+|++++.|
T Consensus       220 ~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~------~~~~~h~~~V~~v~~~~--------------~-~~l~s~g~D  278 (287)
T d1pgua2         220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKII------KALNAHKDGVNNLLWET--------------P-STLVSSGAD  278 (287)
T ss_dssp             ----CCSCCEEEEEETTSCEEEEESSCTTCCE------EETTSSTTCEEEEEEEE--------------T-TEEEEEETT
T ss_pred             cccccCCCCeeEeecCCCeEEEEECCCCCeEE------EEeCCCCCCeEEEEECC--------------C-CEEEEEECC
Confidence                  01289999999999999997644321      11111111111223333              2 579999999


Q ss_pred             CcEEEEEE
Q 019349          312 GYFVEYIF  319 (342)
Q Consensus       312 g~v~~~~~  319 (342)
                      |.|++|++
T Consensus       279 ~~v~iW~i  286 (287)
T d1pgua2         279 ACIKRWNV  286 (287)
T ss_dssp             SCEEEEEE
T ss_pred             CeEEEEEE
Confidence            99999985

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.1e-27  Score=214.92  Aligned_cols=248  Identities=17%  Similarity=0.220  Sum_probs=166.5

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc------EEEEE--eeCC---EEEEEEc-CCC-CeEEEEcCCC
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR------LCYER--AVGA---FSIVEML-YSS-SLLAIVGAGE   68 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~------~~~~~--~~~~---~~~~~~~-~~~-~~~~~~~~g~   68 (342)
                      ...|...|+++++++  ++|++|+.|+ ++|||..+.+      .....  +...   +...... .+. ....+++++ 
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-   86 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS-   86 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE-
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe-
Confidence            468999999999975  5788888887 6999976542      11111  1111   2222211 222 222223322 


Q ss_pred             CCCCCCCeEEEEECCCCcE---EEE--Ee------cCCceEEEEEcCC-------eEEEEE-CCeEEEEECCCCc-----
Q 019349           69 QPSLSPRRLCLFNTTTGTA---LRE--LN------FLTSILAVRLNKK-------RLVIVL-REKTYIYDANTLA-----  124 (342)
Q Consensus        69 ~~~~~d~~i~iwd~~~~~~---~~~--~~------~~~~v~~i~~~~~-------~~~~~~-d~~i~i~d~~~~~-----  124 (342)
                          .|++|++|++.....   ...  ..      .+..+..+++..+       .++.+. |+.+++|++....     
T Consensus        87 ----~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          87 ----FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             ----TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             ----CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence                589999999754332   111  11      1234566666443       233344 8999999984211     


Q ss_pred             ----------eeeEEeCC-CCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE------ecccCCeeEEEE
Q 019349          125 ----------ILDTIDTV-PNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI------DAHQAPLAAIVL  187 (342)
Q Consensus       125 ----------~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~------~~h~~~v~~i~~  187 (342)
                                ........ .....+.+++++|++ ++|+++  .||+|+|||+.+++++..+      .+|..+|++++|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs--~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF--NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC--TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEe--CCCcEEEEeecccccccccccccccccccceEEEccc
Confidence                      11111111 112234567777776 777776  6899999999998876544      468999999999


Q ss_pred             CCCCCEEEEEeCCCc--EEEEEEcCCCeeEEEeccC-----------cCceeEEEEEEecCCCcccEEEEEeCCCcEEEE
Q 019349          188 SSNGMYIATASEQGT--IIRVFLVSEATKSYSFRRG-----------TYPSTIFSLSFGQSMQFQDILVATSSSGSLHVF  254 (342)
Q Consensus       188 s~dg~~lat~s~dg~--~irlwd~~~~~~~~~~~~~-----------~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vw  254 (342)
                      +|||++|++||.|++  .|++||+++++.+..+...           .|...|++|+|+||++   +|+++|.|++|+||
T Consensus       240 spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~---~l~S~s~D~~v~vW  316 (393)
T d1sq9a_         240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGE---TLCSAGWDGKLRFW  316 (393)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSS---EEEEEETTSEEEEE
T ss_pred             ccccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCC---eeEEECCCCEEEEE
Confidence            999999999999975  4799999999988877421           2345699999999999   99999999999999


Q ss_pred             ecCCCCCCC
Q 019349          255 SPGFAINQR  263 (342)
Q Consensus       255 d~~~~~~~~  263 (342)
                      |+++++...
T Consensus       317 d~~~g~~~~  325 (393)
T d1sq9a_         317 DVKTKERIT  325 (393)
T ss_dssp             ETTTTEEEE
T ss_pred             ECCCCCEEE
Confidence            999876543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=9.1e-27  Score=205.03  Aligned_cols=273  Identities=11%  Similarity=0.157  Sum_probs=184.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee--CCEEEEEEc--CCCCeEEEEcCCCCCCCCCCeEE
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV--GAFSIVEML--YSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      ..|..+|++++|+|++ +|++|+.|+ +++|+....+.......  .........  .+...++..+       .|++|+
T Consensus        50 ~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~i~  121 (355)
T d1nexb2          50 SGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGS-------RDNTLH  121 (355)
T ss_dssp             ECCSSCEEEEEEETTT-EEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEE-------TTSEEE
T ss_pred             ECCCCCEEEEEEcCCC-EEEEEecccccccccccccccccccccccccccccccccccccceeeeec-------CCCcEE
Confidence            3578999999999865 677777766 69999998876654432  223322222  3333444444       489999


Q ss_pred             EEECCCCcEEEEEec------------------------CCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCC
Q 019349           79 LFNTTTGTALRELNF------------------------LTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVP  133 (342)
Q Consensus        79 iwd~~~~~~~~~~~~------------------------~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~  133 (342)
                      +||+.++..+.....                        ...+.....+++.++... |+.+++||+.+++.+.....+.
T Consensus       122 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~  201 (355)
T d1nexb2         122 VWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  201 (355)
T ss_dssp             EEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             EEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeeccc
Confidence            999987655432211                        123444455566666655 7899999999998887775444


Q ss_pred             CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe
Q 019349          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT  213 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~  213 (342)
                      .  ...++..++++..+++++  .||.|++||+.++..+..+++|..+|+++++++  ++|++|+.||+ |++||++++.
T Consensus       202 ~--~~~~~~~~~~~~~~~~~~--~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~-i~iwd~~~~~  274 (355)
T d1nexb2         202 D--RIYSTIYDHERKRCISAS--MDTTIRIWDLENGELMYTLQGHTALVGLLRLSD--KFLVSAAADGS-IRGWDANDYS  274 (355)
T ss_dssp             S--CEEEEEEETTTTEEEEEE--TTSCEEEEETTTCCEEEEECCCSSCCCEEEECS--SEEEEECTTSE-EEEEETTTCC
T ss_pred             c--ccccccccccceeeeccc--ccceEEeeecccccccccccccccccccccccc--ceeeeeecccc-cccccccccc
Confidence            3  455566667777888877  589999999999999999999999999999975  69999999997 5899999887


Q ss_pred             eEEEeccCcCceeEEE-EEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccccccccccccee
Q 019349          214 KSYSFRRGTYPSTIFS-LSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVL  292 (342)
Q Consensus       214 ~~~~~~~~~~~~~v~~-l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  292 (342)
                      .......   . .+.+ .+|++++.   +|++| .||+|+|||+++++.....          +..+...+         
T Consensus       275 ~~~~~~~---~-~~~~~~~~~~~~~---~l~~g-~d~~i~vwd~~tg~~~~~~----------~~~~~~~V---------  327 (355)
T d1nexb2         275 RKFSYHH---T-NLSAITTFYVSDN---ILVSG-SENQFNIYNLRSGKLVHAN----------ILKDADQI---------  327 (355)
T ss_dssp             EEEEEEC---T-TCCCCCEEEECSS---EEEEE-ETTEEEEEETTTCCBCCSC----------TTTTCSEE---------
T ss_pred             eeccccc---C-CceEEEEEcCCCC---EEEEE-eCCEEEEEECCCCCEEEEE----------ecCCCCCE---------
Confidence            6655421   2 2333 45678887   66555 5899999999887654310          00000111         


Q ss_pred             eeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          293 RNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       293 ~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                       ..+.+.++ ..+++++.||++++|.+|
T Consensus       328 -~~v~~~~~-~~~~~~s~dg~~~l~~~d  353 (355)
T d1nexb2         328 -WSVNFKGK-TLVAAVEKDGQSFLEILD  353 (355)
T ss_dssp             -EEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred             -EEEEEcCC-eEEEEEECCCcEEEEEEe
Confidence             12222332 467778889998888776

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=7.3e-27  Score=202.66  Aligned_cols=234  Identities=12%  Similarity=0.142  Sum_probs=172.8

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCc-----EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGR-----LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .+...|++++|+|++.+++++.++.+++|+.....     .........+..+.+.+++..++...        ++.+++
T Consensus        53 ~h~~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~--------~~~i~~  124 (299)
T d1nr0a2          53 VHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC--------YKHIAI  124 (299)
T ss_dssp             SCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE--------SSEEEE
T ss_pred             CCCCcEEEEEeeccceeecccceeeEEEeccCCccccccccccccccccccccccccccccccccc--------cccccc
Confidence            56789999999999998888888889999975432     22333345566667777666555443        578999


Q ss_pred             EECCCCcEEEEEecCCceEEEEEcCCeE--EEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC
Q 019349           80 FNTTTGTALRELNFLTSILAVRLNKKRL--VIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST  156 (342)
Q Consensus        80 wd~~~~~~~~~~~~~~~v~~i~~~~~~~--~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  156 (342)
                      |+..+   .........+.+++++++..  +++. ++.|++||+++++...... ..+...+.+++++|++.++++++  
T Consensus       125 ~~~~~---~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~--  198 (299)
T d1nr0a2         125 YSHGK---LTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATD--  198 (299)
T ss_dssp             EETTE---EEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEE--
T ss_pred             ccccc---cccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccc--
Confidence            99542   33444556788899988753  3334 8899999998876543221 12344677888888999999887  


Q ss_pred             CccEEEEEEccCCcee---EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEec-cCcCceeEEEEEE
Q 019349          157 TKGSVLVYNVMELHSH---CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFR-RGTYPSTIFSLSF  232 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~---~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~-~~~~~~~v~~l~f  232 (342)
                      .+|.|++||+.++...   ..+.+|..+|++++|+|+|++|++|+.||+ |++||+++++....+. ..++...+.++.|
T Consensus       199 ~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~-i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  277 (299)
T d1nr0a2         199 QSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNS-VIVWNMNKPSDHPIIIKGAHAMSSVNSVIW  277 (299)
T ss_dssp             TTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSC-EEEEETTCTTSCCEEETTSSTTSCEEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccccccccceEEEcCCCE-EEEEECCCCCcceEEEecCCCCCcEEEEEE
Confidence            5899999999877654   445679999999999999999999999998 5899998875433322 2223445777765


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecC
Q 019349          233 GQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       233 s~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                       +++.   +|++++.|++|++||+.
T Consensus       278 -~~~~---~l~s~s~D~~i~iWdl~  298 (299)
T d1nr0a2         278 -LNET---TIVSAGQDSNIKFWNVP  298 (299)
T ss_dssp             -EETT---EEEEEETTSCEEEEECC
T ss_pred             -CCCC---EEEEEeCCCEEEEEecc
Confidence             4556   89999999999999984

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.96  E-value=1.3e-26  Score=203.35  Aligned_cols=234  Identities=10%  Similarity=0.091  Sum_probs=178.5

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCc----EEEEEeeC-CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGR----LCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC   78 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~   78 (342)
                      .+..+|.+++|+|++.+|++|+.++ +++|+.....    .......+ .............+....       .+....
T Consensus        95 ~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  167 (340)
T d1tbga_          95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS-------GDTTCA  167 (340)
T ss_dssp             CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEE-------TTTEEE
T ss_pred             cccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccccccccccccccccc-------cccccc
Confidence            4678999999999999999998887 5999876542    22222211 122222222233343333       377888


Q ss_pred             EEECCCCcEEEEEec-CCceEEEEEcCCeE-EE-EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           79 LFNTTTGTALRELNF-LTSILAVRLNKKRL-VI-VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        79 iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~-~~-~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      .|+............ ...+....+.+... ++ +. |+.|++||+++++.+..+..+..  .+.+++++|++.++++++
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~--~i~~v~~~p~~~~l~s~s  245 (340)
T d1tbga_         168 LWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES--DINAICFFPNGNAFATGS  245 (340)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSS--CEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCC--CeEEEEECCCCCEEEEEe
Confidence            888877666555443 44677777765533 33 33 88999999999999988876544  567778888888999887


Q ss_pred             CCCccEEEEEEccCCceeEEEe--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349          155 STTKGSVLVYNVMELHSHCEID--AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  232 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~~--~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f  232 (342)
                        .||.|++||+...+.+..+.  .|..+|++++|+|+|++|++|+.||. |++||+.+++.+..+..+  ...|++|+|
T Consensus       246 --~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~-i~iwd~~~~~~~~~~~~H--~~~V~~l~~  320 (340)
T d1tbga_         246 --DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN-CNVWDALKADRAGVLAGH--DNRVSCLGV  320 (340)
T ss_dssp             --TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSC-EEEEETTTCCEEEEECCC--SSCEEEEEE
T ss_pred             --CCCeEEEEeecccccccccccccccCceEEEEECCCCCEEEEEECCCE-EEEEECCCCcEEEEEcCC--CCCEEEEEE
Confidence              68999999999988776653  56778999999999999999999998 589999999999998643  557999999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEe
Q 019349          233 GQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       233 s~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      +||+.   +|++|+.||+|+|||
T Consensus       321 s~d~~---~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         321 TDDGM---AVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSS---CEEEEETTSCEEEEC
T ss_pred             eCCCC---EEEEEccCCEEEEeC
Confidence            99999   999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.3e-26  Score=208.18  Aligned_cols=240  Identities=9%  Similarity=0.044  Sum_probs=177.6

Q ss_pred             CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE--EEEEe-cCCceEEEEEcCCe--EEEEE-CCeEEEEEC
Q 019349           47 GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA--LRELN-FLTSILAVRLNKKR--LVIVL-REKTYIYDA  120 (342)
Q Consensus        47 ~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~--~~~~~-~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~  120 (342)
                      .+|.++++.++++.+++++.       ++.|+|||..+++.  +..+. |..+|.+++|+|+.  ++.++ |++|++||+
T Consensus         8 ~pIt~~~~s~dg~~la~~~~-------~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~   80 (371)
T d1k8kc_           8 EPISCHAWNKDRTQIAICPN-------NHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   80 (371)
T ss_dssp             SCCCEEEECTTSSEEEEECS-------SSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeC-------CCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEee
Confidence            56778888888888887764       88999999987764  44444 45699999998764  44444 789999999


Q ss_pred             CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCcee----EEEecccCCeeEEEECCCCCEEEE
Q 019349          121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH----CEIDAHQAPLAAIVLSSNGMYIAT  196 (342)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~----~~~~~h~~~v~~i~~s~dg~~lat  196 (342)
                      .++.....+....+...+.+++++|++..+++++  .++.|++|++......    .....|...|.+++|+|+|++||+
T Consensus        81 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s--~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s  158 (371)
T d1k8kc_          81 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGS--GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAA  158 (371)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEE--TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEE
T ss_pred             cccccccccccccccccccccccccccccceeec--ccCcceeeeeecccccccccccccccccccccccccccccceec
Confidence            8877666665555556788888999999999887  5899999998765532    334578999999999999999999


Q ss_pred             EeCCCcEEEEEEcCCCe------------------eEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          197 ASEQGTIIRVFLVSEAT------------------KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       197 ~s~dg~~irlwd~~~~~------------------~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      |+.||+ +++||...+.                  .+.+..  .+...|.+++|+|+++   +|++++.|++|++||++.
T Consensus       159 ~s~D~~-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~s~~g~---~l~s~~~d~~i~iwd~~~  232 (371)
T d1k8kc_         159 GSCDFK-CRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS--SSCGWVHGVCFSANGS---RVAWVSHDSTVCLADADK  232 (371)
T ss_dssp             EETTSC-EEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC--CCSSCEEEEEECSSSS---EEEEEETTTEEEEEEGGG
T ss_pred             cccCcE-EEEEeeccCccccccccccccccccceeeeeecc--CccCcEEEEEeecccc---cccccccCCcceEEeeec
Confidence            999998 5899986542                  223322  2345699999999999   999999999999999976


Q ss_pred             CCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEeCCcEEEEEEecCC
Q 019349          259 AINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFSINN  323 (342)
Q Consensus       259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~~~  323 (342)
                      +......       .....+.....|++              + +.+++++.|+.+++|.++...
T Consensus       233 ~~~~~~~-------~~~~~~v~s~~fs~--------------d-~~~la~g~d~~~~~~~~~~~~  275 (371)
T d1k8kc_         233 KMAVATL-------ASETLPLLAVTFIT--------------E-SSLVAAGHDCFPVLFTYDSAA  275 (371)
T ss_dssp             TTEEEEE-------ECSSCCEEEEEEEE--------------T-TEEEEEETTSSCEEEEEETTT
T ss_pred             ccceeee-------ecccccceeeeecC--------------C-CCEEEEEcCCceEEEEeeCCC
Confidence            5432210       00000111123333              3 467778889999999887644

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.2e-25  Score=196.36  Aligned_cols=284  Identities=11%  Similarity=0.092  Sum_probs=182.3

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcE----EE-EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCe
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRL----CY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRR   76 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~   76 (342)
                      ++.|...|++|+|+|++++||+|+.|+ ++|||+++...    .. ..+.+.+..+++.++...+++.++      .|++
T Consensus         7 ~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~------~d~~   80 (342)
T d1yfqa_           7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGT------VQGE   80 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEE------TTSC
T ss_pred             CCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcc------cccc
Confidence            467889999999999999999998887 69999876532    11 124567877888766655444444      4899


Q ss_pred             EEEEECCCCcEEEEEecCC--c-eEE-EEEcCCeEEEEE-CCeEEEEECCCCceeeEE----eCCCCCceEEEEeeCCCc
Q 019349           77 LCLFNTTTGTALRELNFLT--S-ILA-VRLNKKRLVIVL-REKTYIYDANTLAILDTI----DTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        77 i~iwd~~~~~~~~~~~~~~--~-v~~-i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  147 (342)
                      |++|+...+..........  . ... .......++.++ ++.+++||++.+......    ...........+...++.
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            9999998887766654432  1 222 222344455555 889999998654332222    111111122222233334


Q ss_pred             cEEEEeCCCCccEEEEEEccCCceeE---EEecccCCeeEEEEC-CCCCEEEEEeCCCcEEEEEEcCCCeeE------EE
Q 019349          148 CFLAVPASTTKGSVLVYNVMELHSHC---EIDAHQAPLAAIVLS-SNGMYIATASEQGTIIRVFLVSEATKS------YS  217 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~~~~~~---~~~~h~~~v~~i~~s-~dg~~lat~s~dg~~irlwd~~~~~~~------~~  217 (342)
                      ..++.++  .+|.|++||+...+...   ....+...+.++.+. .++..+++++.||.+ .+|+.......      ..
T Consensus       161 ~~~~~~~--~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~-~v~~~~~~~~~~~~~~~~~  237 (342)
T d1yfqa_         161 SRLIVGM--NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRV-AVEFFDDQGDDYNSSKRFA  237 (342)
T ss_dssp             SEEEEEE--STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEE-EEEECCTTCCSTTCTTCEE
T ss_pred             Cceeeec--CCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeE-EEEEecCCcceeeccccce
Confidence            4677666  58999999998766432   223444556665554 477899999999984 79998654321      11


Q ss_pred             e---c----cCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccc
Q 019349          218 F---R----RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHH  290 (342)
Q Consensus       218 ~---~----~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (342)
                      +   +    ...+...+++|+|+|++.   +||+|+.||+|+|||+++.+...+..       ...+. ....+      
T Consensus       238 ~~~~~~~~~~~~~~~~v~~l~~sp~~~---~lasg~~Dg~v~vWD~~~~~~l~~~~-------~~~~~-~~~~~------  300 (342)
T d1yfqa_         238 FRCHRLNLKDTNLAYPVNSIEFSPRHK---FLYTAGSDGIISCWNLQTRKKIKNFA-------KFNED-SVVKI------  300 (342)
T ss_dssp             EECCCCCTTCCSSCCCEEEEEECTTTC---CEEEEETTSCEEEEETTTTEEEEECC-------CCSSS-EEEEE------
T ss_pred             eeeeeeccCCCcccccceeEEecCCcc---EEEEECCCCEEEEEECCCCcEEEEec-------CCCCC-EEEEE------
Confidence            1   0    011233589999999999   99999999999999998765433110       00010 01122      


Q ss_pred             eeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          291 VLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       291 ~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                              .+.++.++++++|+.+++|...
T Consensus       301 --------s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         301 --------ACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             --------EECSSEEEEEEECTHHHHCSSS
T ss_pred             --------EeCCCEEEEEEcCCcEEEeeee
Confidence                    2334789999999998888643

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=1.3e-24  Score=187.25  Aligned_cols=230  Identities=13%  Similarity=0.152  Sum_probs=173.8

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTT   83 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~   83 (342)
                      ..|...|.+++|++++.++.++.++.+++|++...+     .......+.+..+...++ .+.       ++.+.+|+..
T Consensus        43 ~~h~~~V~~~~~~~~~~~~s~s~D~~v~~w~~~~~~-----~~~~~~~~~~~~~~~~~~-~~~-------~~~~~~~~~~  109 (287)
T d1pgua2          43 QDHSNLIVSLDNSKAQEYSSISWDDTLKVNGITKHE-----FGSQPKVASANNDGFTAV-LTN-------DDDLLILQSF  109 (287)
T ss_dssp             CCCCSCEEEEECCSTTCCEEEETTTEEEETTEEEEE-----CSSCEEEEEECSSSEEEE-EET-------TSEEEEEETT
T ss_pred             CCCCCCEEEEEecCCCeEEEEeeccccccccccccc-----cccceeeeeeccCCceEE-Eee-------cccceeeecc
Confidence            357788999999988765555555668999965321     123344445444433333 332       5789999999


Q ss_pred             CCcEEEEEecCCceEEEEEcCCeEEEEE-C-CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEE
Q 019349           84 TGTALRELNFLTSILAVRLNKKRLVIVL-R-EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (342)
Q Consensus        84 ~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d-~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i  161 (342)
                      +++.+..+.....+..+..+++.+++.. + +.+++|++.+.+....+.. .....+.+++++|++.+|++++  .+|.|
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~g~--~dg~i  186 (287)
T d1pgua2         110 TGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKT-PLRAKPSYISISPSETYIAAGD--VMGKI  186 (287)
T ss_dssp             TCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSS-CCSSCEEEEEECTTSSEEEEEE--TTSCE
T ss_pred             ceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccceeeeeee-ccCCceeEEEeccCcccccccc--ccccc
Confidence            9999999988888888888888888777 3 4799999987665554433 2334577888889999999887  58999


Q ss_pred             EEEEccCCceeE-EEecccCCeeEEEECCC----------CCEEEEEeCCCcEEEEEEcCCCe-eEEEeccCcCceeEEE
Q 019349          162 LVYNVMELHSHC-EIDAHQAPLAAIVLSSN----------GMYIATASEQGTIIRVFLVSEAT-KSYSFRRGTYPSTIFS  229 (342)
Q Consensus       162 ~iwd~~~~~~~~-~~~~h~~~v~~i~~s~d----------g~~lat~s~dg~~irlwd~~~~~-~~~~~~~~~~~~~v~~  229 (342)
                      ++||+.+++... .+.+|..+|++++|+|+          +.+|||||.|++ |++||++++. .+..+ .+ |...|++
T Consensus       187 ~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~-i~iw~~~~~~~~~~~~-~~-h~~~V~~  263 (287)
T d1pgua2         187 LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTN-IFIYSVKRPMKIIKAL-NA-HKDGVNN  263 (287)
T ss_dssp             EEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSC-EEEEESSCTTCCEEET-TS-STTCEEE
T ss_pred             cceeecccccccccccccccccceeeecccccccccccCCCCeeEeecCCCe-EEEEECCCCCeEEEEe-CC-CCCCeEE
Confidence            999999887654 46789999999999874          568999999998 5899998754 44444 32 4567999


Q ss_pred             EEEecCCCcccEEEEEeCCCcEEEEec
Q 019349          230 LSFGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       230 l~fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      ++|+|++    .|++++.|++|++|++
T Consensus       264 v~~~~~~----~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         264 LLWETPS----TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEEEETT----EEEEEETTSCEEEEEE
T ss_pred             EEECCCC----EEEEEECCCeEEEEEE
Confidence            9999987    5889999999999996

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-24  Score=189.12  Aligned_cols=234  Identities=12%  Similarity=0.181  Sum_probs=173.4

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCC---------------------EEEEE--------
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGA---------------------FSIVE--------   53 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~---------------------~~~~~--------   53 (342)
                      ..+..+|.+++|+|+  +|++|+.|+ +++|+..............                     +....        
T Consensus        54 ~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~  131 (342)
T d2ovrb2          54 VGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLH  131 (342)
T ss_dssp             CCCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEE
T ss_pred             eCCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeeccccccee
Confidence            457889999999975  788888877 5999987664432221100                     00000        


Q ss_pred             -----------EcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEec-CCceEEEEEcCCeEEEEE-CCeEEEEEC
Q 019349           54 -----------MLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF-LTSILAVRLNKKRLVIVL-REKTYIYDA  120 (342)
Q Consensus        54 -----------~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~-~~~v~~i~~~~~~~~~~~-d~~i~i~d~  120 (342)
                                 .......++..+       .++.|++||....+.+..+.. ...+..+.+++..++.++ |+.|++||+
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~  204 (342)
T d2ovrb2         132 VLMGHVAAVRCVQYDGRRVVSGA-------YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDV  204 (342)
T ss_dssp             EEECCSSCEEEEEECSSCEEEEE-------TTSCEEEEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEET
T ss_pred             eeecccccceeeccccceeeeec-------CCCeEEEeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeec
Confidence                       001111222222       489999999998888877754 346777888888877777 899999999


Q ss_pred             CCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec---ccCCeeEEEECCCCCEEEEE
Q 019349          121 NTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA---HQAPLAAIVLSSNGMYIATA  197 (342)
Q Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~---h~~~v~~i~~s~dg~~lat~  197 (342)
                      +.++.+..+..+..  .+.+++++++  ++++++  .||.|++||+...+....+..   |...+.++.++  ++++++|
T Consensus       205 ~~~~~~~~~~~~~~--~v~~~~~~~~--~l~s~s--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~  276 (342)
T d2ovrb2         205 ETGNCIHTLTGHQS--LTSGMELKDN--ILVSGN--ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITS  276 (342)
T ss_dssp             TTCCEEEEECCCCS--CEEEEEEETT--EEEEEE--TTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred             ccceeeeEeccccc--ceeEEecCCC--EEEEEc--CCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEE
Confidence            99998888765544  4667777654  788877  589999999999888777764   55677777765  5699999


Q ss_pred             eCCCcEEEEEEcCCCeeEEEecc---CcCceeEEEEEEecCCCcccEEEEEeCCCc----EEEEecCC
Q 019349          198 SEQGTIIRVFLVSEATKSYSFRR---GTYPSTIFSLSFGQSMQFQDILVATSSSGS----LHVFSPGF  258 (342)
Q Consensus       198 s~dg~~irlwd~~~~~~~~~~~~---~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~----i~vwd~~~  258 (342)
                      +.||+ |++||+++++.+.++..   +.+...|++++|+|++.   +||+|+.||+    |++||++.
T Consensus       277 s~Dg~-i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~---~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         277 SDDGT-VKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL---VCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             ETTSE-EEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE---EEEEECSSSSSCCEEEEEECCC
T ss_pred             cCCCE-EEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCC---EEEEEeCCCCCeeEEEEEeCCC
Confidence            99997 59999999999887753   22345699999999998   9999999996    99999864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.6e-23  Score=176.06  Aligned_cols=227  Identities=11%  Similarity=0.242  Sum_probs=173.6

Q ss_pred             CCCCCCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEEC
Q 019349            4 QSSSYPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNT   82 (342)
Q Consensus         4 ~~~~~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~   82 (342)
                      ..|..+|++++|  ++++|++|+.|+ +++|++..+......................++....       ++.+++||.
T Consensus        52 ~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~  122 (293)
T d1p22a2          52 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSK-------DRSIAVWDM  122 (293)
T ss_dssp             CCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEET-------TSCEEEEEC
T ss_pred             ecCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccccccceeeccc-------ccceeEeec
Confidence            457889999988  567899998887 6999999987766555444444455555666665554       789999998


Q ss_pred             CCCcEEEEE----ecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           83 TTGTALREL----NFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        83 ~~~~~~~~~----~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      .+.......    .+...+..+.+.+......+ |+.+++||+++++.+..+..+..  .+..+.+++  ..+++++  .
T Consensus       123 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~--~v~~~~~~~--~~l~~~~--~  196 (293)
T d1p22a2         123 ASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR--GIACLQYRD--RLVVSGS--S  196 (293)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEET--TEEEEEE--T
T ss_pred             cccccccccccccccccccccceecccccccccCCCceeeecCCCCcEEEEEccccc--ccccccCCC--CeEEEec--C
Confidence            876543322    23457888888888887777 88999999999999888876544  455566554  3777777  5


Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC---------eeEEEeccCcCceeEE
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA---------TKSYSFRRGTYPSTIF  228 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~---------~~~~~~~~~~~~~~v~  228 (342)
                      ||.|++||+++.+.+..+.+|...+.+  +++++.+|++|+.||+ |++||+.++         ..+..+..  |...|+
T Consensus       197 dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~--H~~~V~  271 (293)
T d1p22a2         197 DNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAYDGK-IKVWDLVAALDPRAPAGTLCLRTLVE--HSGRVF  271 (293)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEETTSC-EEEEEHHHHTSTTSCTTTTEEEEECC--CSSCCC
T ss_pred             CCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcCCCE-EEEEECCCCccccccCCceeeEEecC--CCCCEE
Confidence            899999999999999999999998876  4567889999999998 589997532         34555543  355688


Q ss_pred             EEEEecCCCcccEEEEEeCCCcEEEEe
Q 019349          229 SLSFGQSMQFQDILVATSSSGSLHVFS  255 (342)
Q Consensus       229 ~l~fs~d~~~~~~l~~~s~dg~i~vwd  255 (342)
                      +++|+  +.   +|+++|.||+|+|||
T Consensus       272 ~v~~d--~~---~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         272 RLQFD--EF---QIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEEC--SS---CEEECCSSSEEEEEC
T ss_pred             EEEEc--CC---EEEEEecCCEEEEeC
Confidence            99884  55   799999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.92  E-value=6.5e-24  Score=187.83  Aligned_cols=194  Identities=14%  Similarity=0.035  Sum_probs=153.6

Q ss_pred             eEEEEEcC-CCCEEEEEcCCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE
Q 019349           10 VFFVSFNQ-DNSGFALSTKDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (342)
Q Consensus        10 V~~l~fs~-d~~~la~g~~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~   88 (342)
                      +..-.||| ||+++|+++.+.+.+||++.++.....+...+..+.+.++++.+++++..     ..+.|++||+++++..
T Consensus         5 ~~~~~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~~~~~~v~~~~~spDg~~l~~~~~~-----~g~~v~v~d~~~~~~~   79 (360)
T d1k32a3           5 KFAEDFSPLDGDLIAFVSRGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTR-----EGDFLGIYDYRTGKAE   79 (360)
T ss_dssp             GGEEEEEECGGGCEEEEETTEEEEECTTSSBEEECSCCSCEEEEEECSSSEEEEEEEET-----TEEEEEEEETTTCCEE
T ss_pred             hhcccccCCCCCEEEEEECCeEEEEECCCCcEEEccCCCCEEEEEECCCCCEEEEEEcC-----CCCEEEEEECCCCcEE
Confidence            34568999 99999999888899999998877766667788889999999888888762     2357999999999887


Q ss_pred             EEEecCCceEEEEEcCCeEEE--EE-CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC--------CCC
Q 019349           89 RELNFLTSILAVRLNKKRLVI--VL-REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA--------STT  157 (342)
Q Consensus        89 ~~~~~~~~v~~i~~~~~~~~~--~~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--------~~~  157 (342)
                      ....+...|.+++|+|+...+  +. ++.+++|++.+++....+..+...  +.+++++|++.+|+++.        ...
T Consensus        80 ~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~spdg~~la~~~~~~~~~~~~~~  157 (360)
T d1k32a3          80 KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAM--ITDFTISDNSRFIAYGFPLKHGETDGYV  157 (360)
T ss_dssp             ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC--CCCEEECTTSCEEEEEEEECSSTTCSCC
T ss_pred             EeeCCCceEEeeeecccccccceeccccccccccccccceeeeeeccccc--ccchhhccceeeeeeeccccccceeecc
Confidence            766777899999999985433  33 779999999999888777655443  44556677888888642        114


Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~  212 (342)
                      ++.+++||+.+++.. .+..|...+..++|+|||++|++++.|+. +++||....
T Consensus       158 ~~~~~v~d~~~~~~~-~~~~~~~~~~~~~~spdg~~l~~~s~~~~-~~~~d~~~~  210 (360)
T d1k32a3         158 MQAIHVYDMEGRKIF-AATTENSHDYAPAFDADSKNLYYLSYRSL-DPSPDRVVL  210 (360)
T ss_dssp             EEEEEEEETTTTEEE-ECSCSSSBEEEEEECTTSCEEEEEESCCC-CCEECSSSS
T ss_pred             ccceeeeccccCcee-eecccccccccccccCCCCEEEEEeCCCc-eEccccccc
Confidence            678999999987654 44557778899999999999999999987 479987554

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2e-23  Score=188.50  Aligned_cols=253  Identities=12%  Similarity=0.122  Sum_probs=156.7

Q ss_pred             eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE-------EEEEecCCceEEE------EEcCC-eEEEE
Q 019349           45 AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA-------LRELNFLTSILAV------RLNKK-RLVIV  110 (342)
Q Consensus        45 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~-------~~~~~~~~~v~~i------~~~~~-~~~~~  110 (342)
                      |...|..++  ..+++++.+++       |++|+|||..+.+.       .....+...+..+      ..+.. ..+++
T Consensus        13 H~~~I~~v~--~~~~~l~S~S~-------D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (393)
T d1sq9a_          13 HDADIFSVS--ACNSFTVSCSG-------DGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVA   83 (393)
T ss_dssp             SSSCEEEEE--ECSSEEEEEET-------TSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEE
T ss_pred             ccCccEEEE--EeCCEEEEEEC-------CCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEE
Confidence            345555554  45678777765       89999999876531       2222222222222      11222 22222


Q ss_pred             --E-CCeEEEEECCCCceee-----EEeCC---CCCceEE--EEeeCC---CccEEEEeCCCCccEEEEEEccCCc----
Q 019349          111 --L-REKTYIYDANTLAILD-----TIDTV---PNLKGLC--AFSPSL---NACFLAVPASTTKGSVLVYNVMELH----  170 (342)
Q Consensus       111 --~-d~~i~i~d~~~~~~~~-----~~~~~---~~~~~~~--~~~~~~---~~~~l~~~~~~~~g~i~iwd~~~~~----  170 (342)
                        . |+.|++|++.......     .....   ..+....  ++.+.+   ...++++++  .||.|++||+....    
T Consensus        84 s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~i~vw~~~~~~~~~~  161 (393)
T d1sq9a_          84 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATD--VKGTTYIWKFHPFADESN  161 (393)
T ss_dssp             EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEE--TTSCEEEEEEESSSSHHH
T ss_pred             EEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEc--CCCcEEEEEeecCCcccc
Confidence              2 8999999985432111     11111   1112233  333332   245677776  58999999985321    


Q ss_pred             -------e-------eEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC----cCceeEEEEEE
Q 019349          171 -------S-------HCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG----TYPSTIFSLSF  232 (342)
Q Consensus       171 -------~-------~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~----~~~~~v~~l~f  232 (342)
                             .       ......+...+++++|+|+| +||+|+.||+ ||+||+.+++.+..+...    .+...|.+++|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~-i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~  239 (393)
T d1sq9a_         162 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGT-VQISELSTLRPLYNFESQHSMINNSNSIRSVKF  239 (393)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSE-EEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             eeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCc-EEEEeecccccccccccccccccccceEEEccc
Confidence                   0       11112455679999999997 8999999997 599999999988776532    13456999999


Q ss_pred             ecCCCcccEEEEEeCCCc---EEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE
Q 019349          233 GQSMQFQDILVATSSSGS---LHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT  309 (342)
Q Consensus       233 s~d~~~~~~l~~~s~dg~---i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  309 (342)
                      +||++   +|++|+.|++   |++||++++..........        ........+.+|...++.+.|.++++.|+++|
T Consensus       240 spdg~---~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~--------~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s  308 (393)
T d1sq9a_         240 SPQGS---LLAIAHDSNSFGCITLYETEFGERIGSLSVPT--------HSSQASLGEFAHSSWVMSLSFNDSGETLCSAG  308 (393)
T ss_dssp             CSSTT---EEEEEEEETTEEEEEEEETTTCCEEEEECBC----------------CCBSBSSCEEEEEECSSSSEEEEEE
T ss_pred             ccccc---eeeeecCCCCcceeeecccccceeeeeecccc--------ccccceeeeecccCceeeeccCCCCCeeEEEC
Confidence            99999   9999999985   9999998776433211000        00111222334555566667777889999999


Q ss_pred             eCCcEEEEEEec
Q 019349          310 YNGYFVEYIFSI  321 (342)
Q Consensus       310 ~dg~v~~~~~~~  321 (342)
                      .||+|++|++..
T Consensus       309 ~D~~v~vWd~~~  320 (393)
T d1sq9a_         309 WDGKLRFWDVKT  320 (393)
T ss_dssp             TTSEEEEEETTT
T ss_pred             CCCEEEEEECCC
Confidence            999999998654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=5.6e-22  Score=172.67  Aligned_cols=236  Identities=12%  Similarity=0.042  Sum_probs=159.1

Q ss_pred             CCCCCeEEEEEcCCC-CEEEEEcCCc-EEEEeCCCCcEEEEEee---CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            5 SSSYPVFFVSFNQDN-SGFALSTKDG-FKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~-~~la~g~~~g-~~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      .+..+|.+++|+|++ .+|++|+.++ +++|++...........   ..............++..+.       ++++++
T Consensus        54 ~h~~~V~~v~f~~~~~~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~  126 (342)
T d1yfqa_          54 RYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASW-------DGLIEV  126 (342)
T ss_dssp             ECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEET-------TSEEEE
T ss_pred             CCCCCEEEEEEeCCCCCEEEEcccccceeeeeccccccccccccccccccccccccccccccccccc-------ccccce
Confidence            478899999999875 4688888877 69999987755443322   22233334445566665554       899999


Q ss_pred             EECCCCcEEEEE--ec-------CCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEE--eCCCCCceEEEEeeCCCc
Q 019349           80 FNTTTGTALREL--NF-------LTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTI--DTVPNLKGLCAFSPSLNA  147 (342)
Q Consensus        80 wd~~~~~~~~~~--~~-------~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~  147 (342)
                      ||++++......  ..       ......+....+.++.+. |+.|++|++...+.....  ................++
T Consensus       127 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (342)
T d1yfqa_         127 IDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQ  206 (342)
T ss_dssp             ECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGG
T ss_pred             eeccccccceeeecccccccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCC
Confidence            998654432221  11       113344555666677666 889999999876543222  111121222222233345


Q ss_pred             cEEEEeCCCCccEEEEEEccCCcee------E---------EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349          148 CFLAVPASTTKGSVLVYNVMELHSH------C---------EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       148 ~~l~~~~~~~~g~i~iwd~~~~~~~------~---------~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~  212 (342)
                      ..+++++  .+|.+.+|+.......      .         ....|..+|++|+|+|++++|||||.||+ |++||++++
T Consensus       207 ~~~~~~s--~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~-v~vWD~~~~  283 (342)
T d1yfqa_         207 EGYACSS--IDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGI-ISCWNLQTR  283 (342)
T ss_dssp             CEEEEEE--TTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSC-EEEEETTTT
T ss_pred             CEEEeec--CCCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCE-EEEEECCCC
Confidence            5666666  5899999997543211      1         12356778999999999999999999998 589999999


Q ss_pred             eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349          213 TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       213 ~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      +++.++... +  ....++|+|+++   +|++++.|+++++|..
T Consensus       284 ~~l~~~~~~-~--~~~~~~~s~~~~---~l~~a~sdd~~~~~~~  321 (342)
T d1yfqa_         284 KKIKNFAKF-N--EDSVVKIACSDN---ILCLATSDDTFKTNAA  321 (342)
T ss_dssp             EEEEECCCC-S--SSEEEEEEECSS---EEEEEEECTHHHHCSS
T ss_pred             cEEEEecCC-C--CCEEEEEEeCCC---EEEEEEcCCcEEEeee
Confidence            999888543 2  245678899998   9999999999888864

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=1.2e-19  Score=156.04  Aligned_cols=237  Identities=11%  Similarity=0.082  Sum_probs=181.4

Q ss_pred             CCeEEEEEcCCCCEEE-EEcCC-cEEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC
Q 019349            8 YPVFFVSFNQDNSGFA-LSTKD-GFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT   84 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la-~g~~~-g~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~   84 (342)
                      ..+..++|+|||++|+ ++..+ .+++||+.+++.+..... .....+.+..+...+++.+.      .++.+.+||..+
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~  105 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPDGKQVYVTNM------ASSTLSVIDTTS  105 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEET------TTTEEEEEETTT
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccccccccccccccccccc------ccceeeeccccc
Confidence            4578999999999875 55444 489999999987765543 34455667777777776665      478999999999


Q ss_pred             CcEEEEEecCCceEEEEEcCCeE--EEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccE
Q 019349           85 GTALRELNFLTSILAVRLNKKRL--VIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGS  160 (342)
Q Consensus        85 ~~~~~~~~~~~~v~~i~~~~~~~--~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~  160 (342)
                      ++.+..+........+.++++..  ++..  ++.+.+|+..+.+.+..+.....   ...+..++++..+++++. ..+.
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~-~~~~  181 (301)
T d1l0qa2         106 NTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS---PKGIAVTPDGTKVYVANF-DSMS  181 (301)
T ss_dssp             TEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS---EEEEEECTTSSEEEEEET-TTTE
T ss_pred             ceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCC---ceEEEeeccccceeeecc-cccc
Confidence            99999998888888999987653  3344  67899999999988888765443   445566677777776664 4688


Q ss_pred             EEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCC---CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCC
Q 019349          161 VLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQ---GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       161 i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~d---g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (342)
                      +.+|+....+....+..+ ..+..++|+++|+.++.++.+   ++ |++||+.+++.+..+..+   ..+.+++|+||++
T Consensus       182 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~v~~~~~~~~~-v~v~D~~t~~~~~~~~~~---~~~~~va~spdg~  256 (301)
T d1l0qa2         182 ISVIDTVTNSVIDTVKVE-AAPSGIAVNPEGTKAYVTNVDKYFNT-VSMIDTGTNKITARIPVG---PDPAGIAVTPDGK  256 (301)
T ss_dssp             EEEEETTTTEEEEEEECS-SEEEEEEECTTSSEEEEEEECSSCCE-EEEEETTTTEEEEEEECC---SSEEEEEECTTSS
T ss_pred             cccccccceeeeeccccc-CCcceeeccccccccccccccceeee-eeeeecCCCeEEEEEcCC---CCEEEEEEeCCCC
Confidence            999998887776666554 446789999999988776543   44 689999999988877543   3478999999998


Q ss_pred             cccEE-EEEeCCCcEEEEecCCCCCC
Q 019349          238 FQDIL-VATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       238 ~~~~l-~~~s~dg~i~vwd~~~~~~~  262 (342)
                         +| ++++.+++|++||+++.+..
T Consensus       257 ---~l~va~~~~~~i~v~D~~t~~~~  279 (301)
T d1l0qa2         257 ---KVYVALSFCNTVSVIDTATNTIT  279 (301)
T ss_dssp             ---EEEEEETTTTEEEEEETTTTEEE
T ss_pred             ---EEEEEECCCCeEEEEECCCCeEE
Confidence               76 57778999999999887643

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.88  E-value=2e-19  Score=154.67  Aligned_cols=258  Identities=10%  Similarity=0.084  Sum_probs=187.8

Q ss_pred             EEcCC-cEEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEE
Q 019349           24 LSTKD-GFKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVR  101 (342)
Q Consensus        24 ~g~~~-g~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~  101 (342)
                      +++++ .+.+||+++++++..... .....+.+.++++++++.+.      .+++|++||+.+++.+..+.....+..+.
T Consensus         7 ~~~~~~~v~v~D~~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~------~~~~i~v~d~~t~~~~~~~~~~~~~~~~~   80 (301)
T d1l0qa2           7 ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANA------HSNDVSIIDTATNNVIATVPAGSSPQGVA   80 (301)
T ss_dssp             EETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSEEEEE
T ss_pred             EECCCCEEEEEECCCCeEEEEEECCCCceEEEEeCCCCEEEEEEC------CCCEEEEEECCCCceeeeeeccccccccc
Confidence            44444 489999999988776554 34455778888888876654      37899999999999999998888889999


Q ss_pred             EcCCe--EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec
Q 019349          102 LNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA  177 (342)
Q Consensus       102 ~~~~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~  177 (342)
                      ++++.  +++..  ++.+.+|+..+++....+..+..   ...+..++++..++..+. .++.+.+|+..+.+.+..+..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~dg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  156 (301)
T d1l0qa2          81 VSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS---PLGLALSPDGKKLYVTNN-GDKTVSVINTVTKAVINTVSV  156 (301)
T ss_dssp             ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS---EEEEEECTTSSEEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred             cccccccccccccccceeeecccccceeeeecccccc---ceEEEeecCCCeeeeeec-cccceeeeeccccceeeeccc
Confidence            98764  34444  56999999999988888865443   445666777777766665 588999999999988887775


Q ss_pred             ccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeC---CCcEEEE
Q 019349          178 HQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS---SGSLHVF  254 (342)
Q Consensus       178 h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~---dg~i~vw  254 (342)
                      + ..+.+++++|++..+++++.+...+.+|+....+....+..   ...+..++|++++.   .+++++.   +++|++|
T Consensus       157 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~---~~~v~~~~~~~~~v~v~  229 (301)
T d1l0qa2         157 G-RSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKV---EAAPSGIAVNPEGT---KAYVTNVDKYFNTVSMI  229 (301)
T ss_dssp             C-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSEEEEEEECTTSS---EEEEEEECSSCCEEEEE
T ss_pred             C-CCceEEEeeccccceeeecccccccccccccceeeeecccc---cCCcceeecccccc---ccccccccceeeeeeee
Confidence            5 45788999999999999988876677888887776665543   23467899999998   6665543   4689999


Q ss_pred             ecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEE-EEEeCCcEEEEEEe
Q 019349          255 SPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVS-VITYNGYFVEYIFS  320 (342)
Q Consensus       255 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~dg~v~~~~~~  320 (342)
                      |+.+.+....       +. ..+..              ..+++.+++++|+ +++.||.|++|++.
T Consensus       230 D~~t~~~~~~-------~~-~~~~~--------------~~va~spdg~~l~va~~~~~~i~v~D~~  274 (301)
T d1l0qa2         230 DTGTNKITAR-------IP-VGPDP--------------AGIAVTPDGKKVYVALSFCNTVSVIDTA  274 (301)
T ss_dssp             ETTTTEEEEE-------EE-CCSSE--------------EEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ecCCCeEEEE-------Ec-CCCCE--------------EEEEEeCCCCEEEEEECCCCeEEEEECC
Confidence            9987654221       00 00011              1233345557775 55568999999654

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.87  E-value=1.3e-20  Score=166.35  Aligned_cols=237  Identities=12%  Similarity=0.111  Sum_probs=167.6

Q ss_pred             CCCCCeEEEEEcCCCCEEEEEc-CCc--EEEEeCCCCcEEEE-EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            5 SSSYPVFFVSFNQDNSGFALST-KDG--FKIFDSSTGRLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g~-~~g--~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      .+...|.+++|+|||++|++++ +++  +++||.++++.... .+...+..+.+.++++.++..+.       ++.+++|
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~~~~~spdg~~l~~~~~-------~~~~~~~  112 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVAND-------RFEIMTV  112 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEEEEEECTTSSEEEEEET-------TSEEEEE
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEEeeeecccccccceecc-------ccccccc
Confidence            5778999999999999987654 444  69999998876533 34467788889999999888875       8999999


Q ss_pred             ECCCCcEEEEEecC-CceEEEEEcCCeEEEEE-------------CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC
Q 019349           81 NTTTGTALRELNFL-TSILAVRLNKKRLVIVL-------------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN  146 (342)
Q Consensus        81 d~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (342)
                      ++.+++....+..+ ..+.+++|+++...++.             ++.+++|++.+++.....   ........+.++|+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~---~~~~~~~~~~~spd  189 (360)
T d1k32a3         113 DLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAAT---TENSHDYAPAFDAD  189 (360)
T ss_dssp             ETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECS---CSSSBEEEEEECTT
T ss_pred             cccccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeec---ccccccccccccCC
Confidence            99999988777654 47888999988644432             236899999887654332   22334556677888


Q ss_pred             ccEEEEeCCCCccEEEEEEccCCce-------eEEEeccc------------------------------------CCee
Q 019349          147 ACFLAVPASTTKGSVLVYNVMELHS-------HCEIDAHQ------------------------------------APLA  183 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~~~-------~~~~~~h~------------------------------------~~v~  183 (342)
                      +..|++.+  .++.+.+||......       ...+..|.                                    ....
T Consensus       190 g~~l~~~s--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (360)
T d1k32a3         190 SKNLYYLS--YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR  267 (360)
T ss_dssp             SCEEEEEE--SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEE
T ss_pred             CCEEEEEe--CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCcee
Confidence            99999887  578888998643221       11111111                                    1122


Q ss_pred             EEEECCCC-------------CEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc
Q 019349          184 AIVLSSNG-------------MYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS  250 (342)
Q Consensus       184 ~i~~s~dg-------------~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~  250 (342)
                      .+...+++             .++++++.++. +++||+.+++.. .+     ...|.+++||||++   +|++++.||+
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~d~~~~~~~-~~-----~~~v~~~~~SpDG~---~l~~~~~Dg~  337 (360)
T d1k32a3         268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGV-LLKYDVKTRKVT-EV-----KNNLTDLRLSADRK---TVMVRKDDGK  337 (360)
T ss_dssp             EEEECSSEEEEEECCCCCSHHHHHHCCCCCEE-EEEEETTTCCEE-EE-----EEEEEEEEECTTSC---EEEEEETTSC
T ss_pred             EeeecCCCceEEEEEecCCCeeEEEecCCCCE-EEEEECCCCeEE-Ee-----cCCcCEEEECCCCC---EEEEEECCCe
Confidence            23333322             23455566665 589999887642 22     24589999999999   9999999999


Q ss_pred             EEEEecCCCCCCC
Q 019349          251 LHVFSPGFAINQR  263 (342)
Q Consensus       251 i~vwd~~~~~~~~  263 (342)
                      |++||++.++.+.
T Consensus       338 i~v~d~~~~~~~~  350 (360)
T d1k32a3         338 IYTFPLEKPEDER  350 (360)
T ss_dssp             EEEEESSCTTSCE
T ss_pred             EEEEECCCCCcce
Confidence            9999999887654

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.86  E-value=6.4e-20  Score=167.12  Aligned_cols=243  Identities=11%  Similarity=0.063  Sum_probs=160.1

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEE--EeeC--CEE-EEE--EcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYE--RAVG--AFS-IVE--MLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~--~~~~--~~~-~~~--~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      ..+..++|||||++|++++.++ +++||+++++....  ...+  +.. ...  +.++++.+++.+.      .++++++
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~------~~~~v~i  135 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAY------WPPQFAI  135 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEE------ESSEEEE
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeec------CCCeEEE
Confidence            4689999999999999888766 79999998864432  2211  111 122  2345666665554      4789999


Q ss_pred             EECCCCcEEEEEecC--------------------------------------------------------CceEEEEEc
Q 019349           80 FNTTTGTALRELNFL--------------------------------------------------------TSILAVRLN  103 (342)
Q Consensus        80 wd~~~~~~~~~~~~~--------------------------------------------------------~~v~~i~~~  103 (342)
                      ||..+++++......                                                        ..+.++.++
T Consensus       136 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (426)
T d1hzua2         136 MDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD  215 (426)
T ss_dssp             EETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC
T ss_pred             EcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeEC
Confidence            998887765433210                                                        011233443


Q ss_pred             CCe--EEEEE--CCeEEEEECCCCceeeEEeCCCCC--ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCC-------c
Q 019349          104 KKR--LVIVL--REKTYIYDANTLAILDTIDTVPNL--KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-------H  170 (342)
Q Consensus       104 ~~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-------~  170 (342)
                      ++.  ++++.  ++.+.+++..+++.+..+.....+  .....+.....+...+.... .++.+.+|+....       +
T Consensus       216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~v~~~~~~~~~~~~~~~~  294 (426)
T d1hzua2         216 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL-GDGSISLIGTDPKNHPQYAWK  294 (426)
T ss_dssp             TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECT-TTCEEEEEECCTTTCTTTBTS
T ss_pred             CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccC-CCceEEEeeccccccccccce
Confidence            332  23333  456777777777777666543322  22333333334444444443 5889999987543       6


Q ss_pred             eeEEEecccCCeeEEEECCCCCEEEE-------EeCCCcEEEEEEcCCCeeEEEecc-------CcCceeEEEEEEecCC
Q 019349          171 SHCEIDAHQAPLAAIVLSSNGMYIAT-------ASEQGTIIRVFLVSEATKSYSFRR-------GTYPSTIFSLSFGQSM  236 (342)
Q Consensus       171 ~~~~~~~h~~~v~~i~~s~dg~~lat-------~s~dg~~irlwd~~~~~~~~~~~~-------~~~~~~v~~l~fs~d~  236 (342)
                      ....+++|...+..++|+|||++|++       ++.|++ |+|||+++++...++..       ..+...|.+++|||||
T Consensus       295 ~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~t-v~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDG  373 (426)
T d1hzua2         295 KVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS-VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRG  373 (426)
T ss_dssp             EEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTC-EEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSS
T ss_pred             EeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCE-EEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCC
Confidence            77889999999999999999999994       556777 59999999987665521       1123348899999999


Q ss_pred             CcccEEEEE-----eCCCcEEEEecCCCCC
Q 019349          237 QFQDILVAT-----SSSGSLHVFSPGFAIN  261 (342)
Q Consensus       237 ~~~~~l~~~-----s~dg~i~vwd~~~~~~  261 (342)
                      +   +++++     +.+|+|+|||.++.+.
T Consensus       374 k---~i~vs~~~~~~~~~~i~v~D~~T~k~  400 (426)
T d1hzua2         374 D---EVWFSVWNGKNDSSALVVVDDKTLKL  400 (426)
T ss_dssp             S---EEEEEECCCTTSCCEEEEEETTTTEE
T ss_pred             C---EEEEEEecCCCCCCeEEEEECCCCeE
Confidence            8   66443     3578899999988764

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.83  E-value=9.4e-18  Score=152.60  Aligned_cols=284  Identities=15%  Similarity=0.051  Sum_probs=184.0

Q ss_pred             EcCCCC--EEEEEcCCc-EEEEeCCCCcEEEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEE-
Q 019349           15 FNQDNS--GFALSTKDG-FKIFDSSTGRLCYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR-   89 (342)
Q Consensus        15 fs~d~~--~la~g~~~g-~~v~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~-   89 (342)
                      ++.|..  ++++.++++ ++|||+.+++++..... ..+..+.+.++++.+++.+.       |++|++||+.+++... 
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~~vafSPDGk~l~~~~~-------d~~v~vwd~~t~~~~~~   98 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGR-------DARIDMIDLWAKEPTKV   98 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEEEEEECTTSCEEEEEET-------TSEEEEEETTSSSCEEE
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEeC-------CCCEEEEEccCCceeEE
Confidence            555543  456677776 69999999988776654 35666788888888877654       8999999999887544 


Q ss_pred             -EEecCCceEEEE----EcCC--eEEEEE--CCeEEEEECCCCceeeEEeCCCCCc---------eEEEEeeCCCccEEE
Q 019349           90 -ELNFLTSILAVR----LNKK--RLVIVL--REKTYIYDANTLAILDTIDTVPNLK---------GLCAFSPSLNACFLA  151 (342)
Q Consensus        90 -~~~~~~~v~~i~----~~~~--~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~  151 (342)
                       ++........+.    |+++  .++++.  ++.+.+||..+++++..+..+....         ....+..++++..++
T Consensus        99 ~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~  178 (426)
T d1hzua2          99 AEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFI  178 (426)
T ss_dssp             EEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEE
T ss_pred             EEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEE
Confidence             444433444444    4444  344443  7899999999998877765433211         123334445555555


Q ss_pred             EeCCCCccEEEEEEccCCcee-EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccC---------
Q 019349          152 VPASTTKGSVLVYNVMELHSH-CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRG---------  221 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~~~~-~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~---------  221 (342)
                      .... ..+.+.+++....... .....+...+..++|+|+|++++++..+...+.+++..+++.+..+..+         
T Consensus       179 ~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (426)
T d1hzua2         179 VNVK-ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGA  257 (426)
T ss_dssp             EEET-TTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCE
T ss_pred             EecC-CCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCccccccee
Confidence            5443 4577777777665533 2334677889999999999999999877777788988887765433210         


Q ss_pred             -------------------------------------------cCceeEEEEEEecCCCcccEEEE-------EeCCCcE
Q 019349          222 -------------------------------------------TYPSTIFSLSFGQSMQFQDILVA-------TSSSGSL  251 (342)
Q Consensus       222 -------------------------------------------~~~~~v~~l~fs~d~~~~~~l~~-------~s~dg~i  251 (342)
                                                                 .+...+..++|+||++   +|++       ++.+++|
T Consensus       258 ~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~---~l~v~~~~~~s~~~~~tv  334 (426)
T d1hzua2         258 NFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSS---HLYVDTTFNPDARISQSV  334 (426)
T ss_dssp             EEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCS---EEEECCTTCSSHHHHTCE
T ss_pred             eeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCc---eEEEeecCCCCcccCCEE
Confidence                                                       0112267799999999   8885       4567899


Q ss_pred             EEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE-----eCCcEEEEEEec
Q 019349          252 HVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT-----YNGYFVEYIFSI  321 (342)
Q Consensus       252 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~dg~v~~~~~~~  321 (342)
                      +|||+++.+...+          ..|.  ...-....+...+.++.|.|++++|++.+     .||.|++|+...
T Consensus       335 ~vwd~~t~~~~~~----------~~~~--~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T  397 (426)
T d1hzua2         335 AVFDLKNLDAKYQ----------VLPI--AEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKT  397 (426)
T ss_dssp             EEEETTCTTSCCE----------EECH--HHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTT
T ss_pred             EEEECCCCCcCeE----------Eecc--chhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCC
Confidence            9999988775432          1110  00001111122233445677778776543     588899996443

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.83  E-value=3.2e-17  Score=149.41  Aligned_cols=293  Identities=13%  Similarity=0.020  Sum_probs=190.4

Q ss_pred             cCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeC-CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc--EEEEE
Q 019349           16 NQDNSGFALSTKDG-FKIFDSSTGRLCYERAVG-AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT--ALREL   91 (342)
Q Consensus        16 s~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~--~~~~~   91 (342)
                      +++.-++++.++++ +.|||..+++++.....+ .+..+.+.++++++++++.       |+++++||+.+++  .+.++
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~-------dg~v~~~d~~t~~~~~~~~i  101 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGR-------DGKVNMIDLWMKEPTTVAEI  101 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEET-------TSEEEEEETTSSSCCEEEEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcC-------CCCEEEEEeeCCCceEEEEE
Confidence            34433456777776 699999999988776553 4667788889999987764       8999999998876  34455


Q ss_pred             ecCCceEEEEE----cCC--eEEEEE--CCeEEEEECCCCceeeEEeCCCC---------CceEEEEeeCCCccEEEEeC
Q 019349           92 NFLTSILAVRL----NKK--RLVIVL--REKTYIYDANTLAILDTIDTVPN---------LKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        92 ~~~~~v~~i~~----~~~--~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~  154 (342)
                      ........+.+    ++|  .+++..  ++++++||..+++++..+..+..         .....++..++++..++++.
T Consensus       102 ~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~  181 (432)
T d1qksa2         102 KIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV  181 (432)
T ss_dssp             ECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred             ecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE
Confidence            54444445544    444  344433  78999999999998887754321         12234556667777766665


Q ss_pred             CCCccEEEEEEccCCceeEEEe-cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCc-----------
Q 019349          155 STTKGSVLVYNVMELHSHCEID-AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGT-----------  222 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~~-~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~-----------  222 (342)
                      . .++.|.+||..+.+...... .+...+..++|+|||+++++++.++..+.++|..+++.+..+..+.           
T Consensus       182 ~-~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~  260 (432)
T d1qksa2         182 K-ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF  260 (432)
T ss_dssp             T-TTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE
T ss_pred             c-cCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccce
Confidence            4 58999999998877554433 3556788999999999999999888778899998887665442110           


Q ss_pred             -------------------------------CceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCc---
Q 019349          223 -------------------------------YPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRT---  268 (342)
Q Consensus       223 -------------------------------~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~---  268 (342)
                                                     +...+....++|++.   .+++++.+++.++|+.............   
T Consensus       261 ~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~---~~~~~s~p~~~~lw~~~~~~~~~~~~~sv~v  337 (432)
T d1qksa2         261 VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGG---SLFIKTHPNSQYLYVDATLNPEAEISGSVAV  337 (432)
T ss_dssp             EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSC---CCCEECCTTCSEEEEECTTCSSHHHHTCEEE
T ss_pred             ecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCC---eEEEEecCCccceeecccCCCCCCeeeEEEE
Confidence                                           001244556777776   6777888888888876543321100000   


Q ss_pred             --ccccccccccccccccccc------ccceeeeccCCCccccEEEEEE-----eCCcEEEEEE
Q 019349          269 --SSILGSILPESVNEVLDPA------DHHVLRNAFPAGVKRASVSVIT-----YNGYFVEYIF  319 (342)
Q Consensus       269 --~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~-----~dg~v~~~~~  319 (342)
                        ...+..-..+....+|+..      .+...+.++.|.+++++|++.+     .||.|.+|+-
T Consensus       338 pDg~~la~~s~d~~~k~w~~~~~~~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~  401 (432)
T d1qksa2         338 FDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDD  401 (432)
T ss_dssp             EEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEET
T ss_pred             EechhhcccccCCceEecccccccccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEEC
Confidence              0000000011122345432      2333455678899988887665     3688999963

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.82  E-value=2.5e-18  Score=149.84  Aligned_cols=246  Identities=10%  Similarity=0.050  Sum_probs=173.8

Q ss_pred             CCCCeEEEEEcCCCCEE-EEEcCCc-EEEEeCCCCcEEEEEeeC-------CEEEEEEcCCCCeEEEEcCCCCC-----C
Q 019349            6 SSYPVFFVSFNQDNSGF-ALSTKDG-FKIFDSSTGRLCYERAVG-------AFSIVEMLYSSSLLAIVGAGEQP-----S   71 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~l-a~g~~~g-~~v~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~g~~~-----~   71 (342)
                      ....+.+++|+|||++| ++++.++ +.+||+.+++++......       ....+.+.++.+.++........     .
T Consensus        32 ~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~  111 (337)
T d1pbyb_          32 AGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFE  111 (337)
T ss_dssp             CTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeecc
Confidence            34557799999999987 4566555 799999999887655331       11234566666666555421000     0


Q ss_pred             CCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEE-EECCeEEEEECCCCceeeEEeCCCCCceEEEEeeC------
Q 019349           72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVI-VLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPS------  144 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~------  144 (342)
                      ..+..+.+||..+++.+..+.....+..+.++++...+ +.++.+.+||..+++....+......... .+.+.      
T Consensus       112 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  190 (337)
T d1pbyb_         112 VQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET-YAQPDVLAVWN  190 (337)
T ss_dssp             ECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESSSEEEEETTTTEEEEEECSTTTTTTT-BCCCBCCCCCC
T ss_pred             ccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcCCcceeeeecCcEEEEeecCCccccc-eecCCcceeec
Confidence            13678999999999999999888888899998886433 44778899999999888777543322110 00000      


Q ss_pred             ----------------CCccEEEEeCCCCccEEEEEEccCCceeE-EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349          145 ----------------LNACFLAVPASTTKGSVLVYNVMELHSHC-EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF  207 (342)
Q Consensus       145 ----------------~~~~~l~~~~~~~~g~i~iwd~~~~~~~~-~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw  207 (342)
                                      .+........  .++.+.+||..+++... .+..|...+.+++++|++.+++.++  +. +++|
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-i~v~  265 (337)
T d1pbyb_         191 QHESSGVMATPFYTARKDIDPADPTA--YRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGAY--NV-LESF  265 (337)
T ss_dssp             CCTTTTEEEEEEEEEBTTSCTTSGGG--EEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEEE--SE-EEEE
T ss_pred             cccccceeeeeeeeeeeccceeeecc--cCccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEcc--cc-EEEE
Confidence                            0000001111  35679999999887654 3556778889999999999998775  55 6899


Q ss_pred             EcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          208 LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       208 d~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      |+.+++.+..+..   ...+.+++|+|||+   +|++++.+|+|+|||+++.+..+
T Consensus       266 d~~~~~~~~~~~~---~~~~~~~~~s~dG~---~l~v~~~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         266 DLEKNASIKRVPL---PHSYYSVNVSTDGS---TVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             ETTTTEEEEEEEC---SSCCCEEEECTTSC---EEEEESBSSEEEEEETTTCCEEE
T ss_pred             ECCCCcEEEEEcC---CCCEEEEEECCCCC---EEEEEeCCCcEEEEECCCCcEEE
Confidence            9999999888753   33478999999999   99999999999999999876543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.82  E-value=8.1e-19  Score=153.54  Aligned_cols=237  Identities=8%  Similarity=0.048  Sum_probs=161.2

Q ss_pred             EEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEee---CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE
Q 019349           13 VSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (342)
Q Consensus        13 l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~   88 (342)
                      ++|++++++|++++.++ +.+||+.+++++.....   .....+.+.+++..+++.+.      .++.|++||+.+++.+
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~------~~~~v~~~d~~t~~~~   75 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN------HYGDIYGIDLDTCKNT   75 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET------TTTEEEEEETTTTEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC------CCCcEEEEeCccCeee
Confidence            57999999999988765 79999999988776542   23446777788887776654      4799999999999998


Q ss_pred             EEEecCC-------ceEEEEEcCCe--EEEEE-------------CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCC
Q 019349           89 RELNFLT-------SILAVRLNKKR--LVIVL-------------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLN  146 (342)
Q Consensus        89 ~~~~~~~-------~v~~i~~~~~~--~~~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (342)
                      ..+....       .+..+.+++++  ++++.             +..+.+|+..+++....+.....+.....+...++
T Consensus        76 ~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (346)
T d1jmxb_          76 FHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADD  155 (346)
T ss_dssp             EEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTT
T ss_pred             eeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCC
Confidence            8776532       24567787764  33332             45788998877544322211111111111111111


Q ss_pred             ccEEEEe--------------------------------------C------------------------CCCccEEEEE
Q 019349          147 ACFLAVP--------------------------------------A------------------------STTKGSVLVY  164 (342)
Q Consensus       147 ~~~l~~~--------------------------------------~------------------------~~~~g~i~iw  164 (342)
                      +..++..                                      .                        ...++.+.+|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (346)
T d1jmxb_         156 GSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSV  235 (346)
T ss_dssp             SCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEE
T ss_pred             CEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEE
Confidence            1111100                                      0                        0023456677


Q ss_pred             EccCCceeE-EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEE
Q 019349          165 NVMELHSHC-EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILV  243 (342)
Q Consensus       165 d~~~~~~~~-~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~  243 (342)
                      |+.++.... .+..|...+..+.+++++.+++.++.+ . +++||..+++.+..+..+   ..+.+++||||++   +|+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-v~v~d~~~~~~~~~~~~~---~~~~~va~s~DG~---~l~  307 (346)
T d1jmxb_         236 DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN-R-LAKYDLKQRKLIKAANLD---HTYYCVAFDKKGD---KLY  307 (346)
T ss_dssp             ETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEES-E-EEEEETTTTEEEEEEECS---SCCCEEEECSSSS---CEE
T ss_pred             ECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCC-e-EEEEECCCCcEEEEEcCC---CCEEEEEEcCCCC---EEE
Confidence            777666443 345677788899999999888887764 4 589999999988877533   3488999999999   999


Q ss_pred             EEeCCCcEEEEecCCCCCCC
Q 019349          244 ATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       244 ~~s~dg~i~vwd~~~~~~~~  263 (342)
                      +++.||+|+|||+++.+..+
T Consensus       308 v~~~d~~v~v~D~~t~~~i~  327 (346)
T d1jmxb_         308 LGGTFNDLAVFNPDTLEKVK  327 (346)
T ss_dssp             EESBSSEEEEEETTTTEEEE
T ss_pred             EEeCCCcEEEEECccCCEEE
Confidence            99999999999998876543

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.74  E-value=3.6e-15  Score=132.07  Aligned_cols=247  Identities=9%  Similarity=-0.017  Sum_probs=152.6

Q ss_pred             CCCCCCCeEEEEEcCCCCEEEEEcC------CcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCC---CCC
Q 019349            3 NQSSSYPVFFVSFNQDNSGFALSTK------DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQP---SLS   73 (342)
Q Consensus         3 ~~~~~~~V~~l~fs~d~~~la~g~~------~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~   73 (342)
                      ...++.++.+++|+|||+.+++...      ..+.+||.++++++.....+....+.+.+++..+++.+.....   ...
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~~~a~SpDG~~l~va~~~~~~~~~~~~   95 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLPNPVAAHSGSEFALASTSFSRIAKGKR   95 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCccEEEcCCCCEEEEEeecCCccccccc
Confidence            4567789999999999999876532      2368889999998877666555567888899888877543211   134


Q ss_pred             CCeEEEEECCCCcEEEEEecCC-ceEE-------EEEcCC--eEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEE
Q 019349           74 PRRLCLFNTTTGTALRELNFLT-SILA-------VRLNKK--RLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCA  140 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~-~v~~-------i~~~~~--~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~  140 (342)
                      ++.|.+||+.+++.+..+..+. ....       +.++++  .+++..   ++.+.+|+....+........    ....
T Consensus        96 ~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~  171 (373)
T d2madh_          96 TDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSP----TCYH  171 (373)
T ss_pred             ceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccc----eeEE
Confidence            6889999999999988876544 2222       333322  222222   345666666655544333221    1222


Q ss_pred             EeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe--------------------------------------------
Q 019349          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID--------------------------------------------  176 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~--------------------------------------------  176 (342)
                      ++  +++..+++... .+|.+.+||...++......                                            
T Consensus       172 ~s--~~g~~~~v~~~-~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  248 (373)
T d2madh_         172 IH--PGAPSTFYLLC-AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN  248 (373)
T ss_pred             Ee--cCCCcEEEEEc-CCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeEEE
Confidence            33  33333322222 46667777654433221110                                            


Q ss_pred             -----ccc----------CCeeEEEECCCCCEEEE----------EeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEE
Q 019349          177 -----AHQ----------APLAAIVLSSNGMYIAT----------ASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLS  231 (342)
Q Consensus       177 -----~h~----------~~v~~i~~s~dg~~lat----------~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~  231 (342)
                           .+.          .....+++++++..++.          ...++. +.+||+.+++.+..+..   ...+.+++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-v~~~d~~t~~~~~~~~~---~~~~~~~a  324 (373)
T d2madh_         249 KAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKE-VTSVTGLVGQTSSQISL---GHDVDAIS  324 (373)
T ss_pred             EEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCe-EEEEECCCCcEEEEecC---CCCeeEEE
Confidence                 000          11123455566555443          333444 57999999988887743   23478999


Q ss_pred             EecCCCcccE--EEEEeCCCcEEEEecCCCCCCC
Q 019349          232 FGQSMQFQDI--LVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       232 fs~d~~~~~~--l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      |+||++   .  +++++.|++|+|||+++++..+
T Consensus       325 ~spDG~---~~l~vt~~~d~~v~v~D~~tg~~~~  355 (373)
T d2madh_         325 VAQDGG---PDLYALSAGTEVLHIYDAGAGDQDQ  355 (373)
T ss_pred             ECCCCC---EEEEEEeCCCCeEEEEECCCCCEEE
Confidence            999997   4  3678899999999999887644

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=5.5e-16  Score=134.68  Aligned_cols=258  Identities=12%  Similarity=0.062  Sum_probs=170.8

Q ss_pred             CEEEEEcCC-cEEEEeCCCCcEEEEEee----CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC
Q 019349           20 SGFALSTKD-GFKIFDSSTGRLCYERAV----GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL   94 (342)
Q Consensus        20 ~~la~g~~~-g~~v~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~   94 (342)
                      ++|++++.+ .++|||+.+++++.....    .....+.+.++++++++++.      .++.|.+||+.+++.+..+...
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~------~~~~v~v~D~~t~~~~~~~~~~   75 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN------KSESLVKIDLVTGETLGRIDLS   75 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET------TTTEEEEEETTTCCEEEEEECC
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC------CCCeEEEEECCCCcEEEEEecC
Confidence            467777765 589999999988776542    23445778888888776665      4789999999999999887654


Q ss_pred             C------ceEEEEEcCCe--EEEEE-------------CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           95 T------SILAVRLNKKR--LVIVL-------------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        95 ~------~v~~i~~~~~~--~~~~~-------------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      .      .+..++++++.  ++++.             +..+.+||..+++....+.....+   ..++.++++.+++++
T Consensus        76 ~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~s~dg~~l~~~  152 (337)
T d1pbyb_          76 TPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI---TMLAWARDGSKLYGL  152 (337)
T ss_dssp             BTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSC---CCEEECTTSSCEEEE
T ss_pred             CCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCc---eEEEEcCCCCEEEEE
Confidence            3      23467777763  33332             457899999999988888765443   344667788888877


Q ss_pred             CCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEE------------------------EEEeCCCcEEEEEEc
Q 019349          154 ASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYI------------------------ATASEQGTIIRVFLV  209 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~l------------------------at~s~dg~~irlwd~  209 (342)
                      +    +.+.+||..+++....+..+..+ ....++|++..+                        ..++.++. +.+||.
T Consensus       153 ~----~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  226 (337)
T d1pbyb_         153 G----RDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTG-LLTMDL  226 (337)
T ss_dssp             S----SSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEE-EEEEET
T ss_pred             c----CCcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCcc-EEEEEc
Confidence            6    33788999999887777654322 112233332221                        11122233 578999


Q ss_pred             CCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccccccccccc
Q 019349          210 SEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADH  289 (342)
Q Consensus       210 ~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (342)
                      .+++....... .....+..++++|++.   +++++  ++.|++||+++.+...+..         .+..          
T Consensus       227 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~~~--~~~i~v~d~~~~~~~~~~~---------~~~~----------  281 (337)
T d1pbyb_         227 ETGEMAMREVR-IMDVFYFSTAVNPAKT---RAFGA--YNVLESFDLEKNASIKRVP---------LPHS----------  281 (337)
T ss_dssp             TTCCEEEEEEE-ECSSCEEEEEECTTSS---EEEEE--ESEEEEEETTTTEEEEEEE---------CSSC----------
T ss_pred             CCCcEEEEEec-CCCcceEEEEecccce---EEEEc--cccEEEEECCCCcEEEEEc---------CCCC----------
Confidence            88875543222 2234478889999998   77655  5899999998876533110         0100          


Q ss_pred             ceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          290 HVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       290 ~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                         ...+++.+++++|++++.||.|++|+..
T Consensus       282 ---~~~~~~s~dG~~l~v~~~~~~i~v~D~~  309 (337)
T d1pbyb_         282 ---YYSVNVSTDGSTVWLGGALGDLAAYDAE  309 (337)
T ss_dssp             ---CCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred             ---EEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence               0123345566899999999999999754

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.73  E-value=1.1e-15  Score=139.18  Aligned_cols=183  Identities=11%  Similarity=0.055  Sum_probs=134.7

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE-CCeEEEEECCCCc--eeeEEeCCCCCceE-EEEeeCCC
Q 019349           73 SPRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL-REKTYIYDANTLA--ILDTIDTVPNLKGL-CAFSPSLN  146 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~~--~~~~~~~~~~~~~~-~~~~~~~~  146 (342)
                      .+++|.|||..+++.+..+.....+..++|+|++  +++++ |+.+++||+.+++  ...++....++.++ .+..++||
T Consensus        40 d~g~v~v~D~~t~~v~~~~~~g~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpD  119 (432)
T d1qksa2          40 DAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWE  119 (432)
T ss_dssp             TTTEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCT
T ss_pred             CCCEEEEEECCCCcEEEEEeCCCCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCC
Confidence            4899999999999999999888889999999985  44445 8899999998765  44555554333332 33456788


Q ss_pred             ccEEEEeCCCCccEEEEEEccCCceeEEEeccc-----------CCeeEEEECCCCCEEEE-EeCCCcEEEEEEcCCCee
Q 019349          147 ACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ-----------APLAAIVLSSNGMYIAT-ASEQGTIIRVFLVSEATK  214 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~-----------~~v~~i~~s~dg~~lat-~s~dg~~irlwd~~~~~~  214 (342)
                      +++|+++++ .+++|++||..+++++..+..|.           .....+.++|+|..++. .+.+++ |.+||..+++.
T Consensus       120 G~~l~vs~~-~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~-i~~~d~~~~~~  197 (432)
T d1qksa2         120 DKYAIAGAY-WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK-ILLVDYTDLNN  197 (432)
T ss_dssp             TTEEEEEEE-ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE-EEEEETTCSSE
T ss_pred             CCEEEEEcC-CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCe-EEEEEccCCCc
Confidence            988765554 58999999999999888776543           44667899999987654 455565 57999988775


Q ss_pred             EEEeccCcCceeEEEEEEecCCCcccEEEEEeC-CCcEEEEecCCCCC
Q 019349          215 SYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGSLHVFSPGFAIN  261 (342)
Q Consensus       215 ~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~-dg~i~vwd~~~~~~  261 (342)
                      ....... ....+..++|+||++   ++++++. ++.+.++|.+..+.
T Consensus       198 ~~~~~i~-~g~~~~~~~~spdg~---~~~va~~~~~~v~v~d~~~~~~  241 (432)
T d1qksa2         198 LKTTEIS-AERFLHDGGLDGSHR---YFITAANARNKLVVIDTKEGKL  241 (432)
T ss_dssp             EEEEEEE-CCSSEEEEEECTTSC---EEEEEEGGGTEEEEEETTTTEE
T ss_pred             ceEEEEc-ccCccccceECCCCC---EEEEeccccceEEEeecccceE
Confidence            4322211 123478899999999   7766665 56799999876543

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=4.4e-14  Score=122.47  Aligned_cols=276  Identities=11%  Similarity=0.091  Sum_probs=171.0

Q ss_pred             EEEEcCC-cEEEEeCCCC-cE--EE-EEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE----EEEe
Q 019349           22 FALSTKD-GFKIFDSSTG-RL--CY-ERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL----RELN   92 (342)
Q Consensus        22 la~g~~~-g~~v~d~~~~-~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~----~~~~   92 (342)
                      +++++++ .+++|++++. .+  +. ..+.+.+..+.+.++++.+++++.      .++.|++|++..+...    ....
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~------~d~~i~~~~i~~~~~~~~~~~~~~   80 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR------PEFRVLAYRIAPDDGALTFAAESA   80 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET------TTTEEEEEEECTTTCCEEEEEEEE
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC------CCCeEEEEEEeCCCCcEEEeeecc
Confidence            3455444 4799998754 22  21 123356667788899888876665      4899999998765432    2334


Q ss_pred             cCCceEEEEEcCCe--EEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccC
Q 019349           93 FLTSILAVRLNKKR--LVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVME  168 (342)
Q Consensus        93 ~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~  168 (342)
                      ....+..+++++++  ++++.  ++.+.+|+..............+.....++..++++.+++.++. .+..|.+|+...
T Consensus        81 ~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~-~~~~i~~~~~~~  159 (333)
T d1ri6a_          81 LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPAL-KQDRICLFTVSD  159 (333)
T ss_dssp             CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEG-GGTEEEEEEECT
T ss_pred             cCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeecccc-ccceeeEEEecc
Confidence            45577889999874  45554  56899999877755544433333334445556777777777765 577899999876


Q ss_pred             CceeEEE------ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCe----eEEEecc---C-cCceeEEEEEEec
Q 019349          169 LHSHCEI------DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEAT----KSYSFRR---G-TYPSTIFSLSFGQ  234 (342)
Q Consensus       169 ~~~~~~~------~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~----~~~~~~~---~-~~~~~v~~l~fs~  234 (342)
                      .......      ..+......++|++++.+++..........+|+.....    .......   . ........+++++
T Consensus       160 ~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  239 (333)
T d1ri6a_         160 DGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITP  239 (333)
T ss_dssp             TSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECT
T ss_pred             CCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEec
Confidence            5432211      13445668899999999988777655445788865432    1112111   1 1122367789999


Q ss_pred             CCCcccEEEEEeCCCcEEEEecCCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEEe-CCc
Q 019349          235 SMQFQDILVATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVITY-NGY  313 (342)
Q Consensus       235 d~~~~~~l~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-dg~  313 (342)
                      |++.  .++++..++++.+|++.........       ....+..    -.|       ..+++.|++++|++++. ++.
T Consensus       240 d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~----~~p-------~~~a~spDGk~l~va~~~~~~  299 (333)
T d1ri6a_         240 DGRH--LYACDRTASLITVFSVSEDGSVLSK-------EGFQPTE----TQP-------RGFNVDHSGKYLIAAGQKSHH  299 (333)
T ss_dssp             TSSE--EEEEETTTTEEEEEEECTTSCCEEE-------EEEEECS----SSC-------CCEEECTTSSEEEEECTTTCE
T ss_pred             ccCc--eeeecccCCeEEEEEEcCCCCEEEE-------EEEeCCC----CCe-------eEEEEeCCCCEEEEEECCCCe
Confidence            9982  4555567789999998765432210       0000000    000       12233555588888776 588


Q ss_pred             EEEEEEecCCC
Q 019349          314 FVEYIFSINNC  324 (342)
Q Consensus       314 v~~~~~~~~~~  324 (342)
                      |.+|++|.+.+
T Consensus       300 v~v~~id~~tG  310 (333)
T d1ri6a_         300 ISVYEIVGEQG  310 (333)
T ss_dssp             EEEEEEETTTT
T ss_pred             EEEEEEECCCC
Confidence            99999998654

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=2.4e-14  Score=125.54  Aligned_cols=241  Identities=11%  Similarity=-0.010  Sum_probs=154.5

Q ss_pred             EEEEEcCCCCEEEEEcC----------C-cEEEEeCCCCcEEEEEeeC---------CEEEEEEcCCCCeEEEEcCCCCC
Q 019349           11 FFVSFNQDNSGFALSTK----------D-GFKIFDSSTGRLCYERAVG---------AFSIVEMLYSSSLLAIVGAGEQP   70 (342)
Q Consensus        11 ~~l~fs~d~~~la~g~~----------~-g~~v~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~   70 (342)
                      ..++|||||++|++.+.          + .+++||+.+++.+......         ....+.+..+.+.+++....   
T Consensus        50 ~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~---  126 (355)
T d2bbkh_          50 PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---  126 (355)
T ss_dssp             CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS---
T ss_pred             CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC---
Confidence            36899999998876532          3 3799999999876554321         11234567777777776542   


Q ss_pred             CCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCCC----CceEEEEeeCC
Q 019349           71 SLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVPN----LKGLCAFSPSL  145 (342)
Q Consensus        71 ~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~  145 (342)
                        .+..+.+||..+++.+..+..+.........+...+..+ |++..++..........+.....    ...+......+
T Consensus       127 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (355)
T d2bbkh_         127 --PAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ  204 (355)
T ss_dssp             --SSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET
T ss_pred             --CCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccC
Confidence              467899999999999888877665444444444444444 66655555544333222221111    11111112233


Q ss_pred             CccEEEEeCCCCccEEEEEEccCCcee--EEEecc----------cCCeeEEEECCCCCEEEEEeCCC---------cEE
Q 019349          146 NACFLAVPASTTKGSVLVYNVMELHSH--CEIDAH----------QAPLAAIVLSSNGMYIATASEQG---------TII  204 (342)
Q Consensus       146 ~~~~l~~~~~~~~g~i~iwd~~~~~~~--~~~~~h----------~~~v~~i~~s~dg~~lat~s~dg---------~~i  204 (342)
                      +...++..+  .++.+.+|++..++..  .....|          ......+++++++..++..+.++         ..+
T Consensus       205 ~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v  282 (355)
T d2bbkh_         205 KAGRLVWPT--YTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFV  282 (355)
T ss_dssp             TTTEEEEEB--TTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEE
T ss_pred             CCCeEEEec--CCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeE
Confidence            445666665  5799999999877532  222222          12345688999999888776543         246


Q ss_pred             EEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE-EEEEeCCCcEEEEecCCCCCCC
Q 019349          205 RVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI-LVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       205 rlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~-l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      ++||..+++.+.++..   ...+.+++|+||++  .+ +++++.|++|+|||+++++..+
T Consensus       283 ~v~d~~t~~~~~~~~~---~~~~~~~a~spDG~--~~l~v~~~~d~~i~v~D~~tg~~~~  337 (355)
T d2bbkh_         283 VVLDAKTGERLAKFEM---GHEIDSINVSQDEK--PLLYALSTGDKTLYIHDAESGEELR  337 (355)
T ss_dssp             EEEETTTCCEEEEEEE---EEEECEEEECCSSS--CEEEEEETTTTEEEEEETTTCCEEE
T ss_pred             EEEeCCCCcEEEEecC---CCCEEEEEEcCCCC--eEEEEEECCCCEEEEEECCCCCEEE
Confidence            8999999998887753   24578999999986  13 4566779999999999886533

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=3e-14  Score=123.57  Aligned_cols=244  Identities=13%  Similarity=0.110  Sum_probs=152.7

Q ss_pred             CCCCCeEEEEEcCCCCEEEEE-cCC-cEEEEeCCCCc--EEEEE--ee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeE
Q 019349            5 SSSYPVFFVSFNQDNSGFALS-TKD-GFKIFDSSTGR--LCYER--AV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRL   77 (342)
Q Consensus         5 ~~~~~V~~l~fs~d~~~la~g-~~~-g~~v~d~~~~~--~~~~~--~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i   77 (342)
                      .++..|.+|+|||||++|+++ .++ .+++|++....  +....  .. .....+.+.++++.+++.+.      .++++
T Consensus        34 ~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~------~~~~v  107 (333)
T d1ri6a_          34 DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSY------NAGNV  107 (333)
T ss_dssp             ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEET------TTTEE
T ss_pred             cCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeeccc------CCCce
Confidence            356789999999999998554 434 47999987653  22221  11 23445778888888887765      47899


Q ss_pred             EEEECCCCcEEEEE---ecCCceEEEEEcCCeE--EEEE--CCeEEEEECCCCceeeEE----eCCCCCceEEEEeeCCC
Q 019349           78 CLFNTTTGTALREL---NFLTSILAVRLNKKRL--VIVL--REKTYIYDANTLAILDTI----DTVPNLKGLCAFSPSLN  146 (342)
Q Consensus        78 ~iwd~~~~~~~~~~---~~~~~v~~i~~~~~~~--~~~~--d~~i~i~d~~~~~~~~~~----~~~~~~~~~~~~~~~~~  146 (342)
                      .+|+..........   .....+.++.++++..  +.+.  +..|.+|+..........    ...........+.++++
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~  187 (333)
T d1ri6a_         108 SVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPN  187 (333)
T ss_dssp             EEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTT
T ss_pred             eeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEecc
Confidence            99998776554433   2344677888887643  3333  568999998765322211    11111223344556666


Q ss_pred             ccEEEEeCCCCccEEEEEEccCCc----eeEEEe------cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEE
Q 019349          147 ACFLAVPASTTKGSVLVYNVMELH----SHCEID------AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSY  216 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~~----~~~~~~------~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~  216 (342)
                      +..+..... ..+...+|+.....    ....+.      ........+++++|++++..+......+++|++.......
T Consensus       188 ~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (333)
T d1ri6a_         188 EQYAYCVNE-LNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVL  266 (333)
T ss_dssp             SSEEEEEET-TTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCE
T ss_pred             ceeEEeecc-ccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEE
Confidence            666665544 46778888864332    112221      1234567789999999877766544446899987654333


Q ss_pred             EeccC-cCceeEEEEEEecCCCcccEEEEEe-CCCcEEEEecCC
Q 019349          217 SFRRG-TYPSTIFSLSFGQSMQFQDILVATS-SSGSLHVFSPGF  258 (342)
Q Consensus       217 ~~~~~-~~~~~v~~l~fs~d~~~~~~l~~~s-~dg~i~vwd~~~  258 (342)
                      ..... .....+.+++|+|||+   +|++++ .+++|++|+++.
T Consensus       267 ~~~~~~~~~~~p~~~a~spDGk---~l~va~~~~~~v~v~~id~  307 (333)
T d1ri6a_         267 SKEGFQPTETQPRGFNVDHSGK---YLIAAGQKSHHISVYEIVG  307 (333)
T ss_dssp             EEEEEEECSSSCCCEEECTTSS---EEEEECTTTCEEEEEEEET
T ss_pred             EEEEEeCCCCCeeEEEEeCCCC---EEEEEECCCCeEEEEEEEC
Confidence            32211 1123367899999999   777765 568999997753

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.63  E-value=3.3e-14  Score=123.67  Aligned_cols=209  Identities=11%  Similarity=0.048  Sum_probs=126.8

Q ss_pred             CCCeEEEEEcCCCCEEE-EEcCCc-EEEEeCCCCcEEEEEeeC--------CEEEEEEcCCCCeEEEEcCCCC-----CC
Q 019349            7 SYPVFFVSFNQDNSGFA-LSTKDG-FKIFDSSTGRLCYERAVG--------AFSIVEMLYSSSLLAIVGAGEQ-----PS   71 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la-~g~~~g-~~v~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~-----~~   71 (342)
                      ...+.+++|+|||++|+ ++..++ +.+||+.+++........        ....+.+.+++..+++.+....     ..
T Consensus        39 ~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~  118 (346)
T d1jmxb_          39 KFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV  118 (346)
T ss_dssp             CCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEE
T ss_pred             CCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeec
Confidence            44577999999999875 455555 799999999877554321        1112445555655544431100     00


Q ss_pred             CCCCeEEEEECCCCcEEE---EEecCCceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCCC---------------
Q 019349           72 LSPRRLCLFNTTTGTALR---ELNFLTSILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVP---------------  133 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~---~~~~~~~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~---------------  133 (342)
                      ..+..+.+||..+++...   ....+..+..+...++..+++.+..+.+|++.+++.+..+..+.               
T Consensus       119 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (346)
T d1jmxb_         119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFW  198 (346)
T ss_dssp             ECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCC
T ss_pred             cCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEE
Confidence            124566677766554322   12222233334444444444444455555554444443332111               


Q ss_pred             ---------------------------------------------------CCceEEEEeeCCCccEEEEeCCCCccEEE
Q 019349          134 ---------------------------------------------------NLKGLCAFSPSLNACFLAVPASTTKGSVL  162 (342)
Q Consensus       134 ---------------------------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~g~i~  162 (342)
                                                                         +...+.....++++..+++..   .+.|.
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~  275 (346)
T d1jmxb_         199 PHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV---LNRLA  275 (346)
T ss_dssp             CCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE---ESEEE
T ss_pred             EEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEec---CCeEE
Confidence                                                               111223333344444555443   47899


Q ss_pred             EEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEecc
Q 019349          163 VYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRR  220 (342)
Q Consensus       163 iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~  220 (342)
                      +||..+++.+..+. +...+.+++|||||++|++++.||+ |++||+++++.+.++..
T Consensus       276 v~d~~~~~~~~~~~-~~~~~~~va~s~DG~~l~v~~~d~~-v~v~D~~t~~~i~~i~~  331 (346)
T d1jmxb_         276 KYDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYLGGTFND-LAVFNPDTLEKVKNIKL  331 (346)
T ss_dssp             EEETTTTEEEEEEE-CSSCCCEEEECSSSSCEEEESBSSE-EEEEETTTTEEEEEEEC
T ss_pred             EEECCCCcEEEEEc-CCCCEEEEEEcCCCCEEEEEeCCCc-EEEEECccCCEEEEEEC
Confidence            99999999888776 4567999999999999999999997 58999999999988764

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=2.6e-14  Score=125.35  Aligned_cols=244  Identities=11%  Similarity=0.053  Sum_probs=151.4

Q ss_pred             CCeEEEEEcCCCCEEEEEc------CCcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCC---CCCCCeEE
Q 019349            8 YPVFFVSFNQDNSGFALST------KDGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQP---SLSPRRLC   78 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~------~~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---~~~d~~i~   78 (342)
                      .|+.-.+.+||++.+++..      .+.+.+||..+++++.....+....+.+.++++.+++++.....   ...++.|+
T Consensus         2 ~p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           2 EPRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CCCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            3444556789999987753      23478999999998877766666677888898888766421000   01367899


Q ss_pred             EEECCCCcEEEEEecCC--------ceEEEEEcCCe--EEEEE---CCeEEEEECCCCceeeEEeCCCCCceE-----EE
Q 019349           79 LFNTTTGTALRELNFLT--------SILAVRLNKKR--LVIVL---REKTYIYDANTLAILDTIDTVPNLKGL-----CA  140 (342)
Q Consensus        79 iwd~~~~~~~~~~~~~~--------~v~~i~~~~~~--~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~-----~~  140 (342)
                      +||+.+++.+..+..+.        ....+.++++.  ++++.   +..+.+|+..+++.+..+..+......     ..
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTF  161 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEE
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcce
Confidence            99999999988775422        23456777664  44444   468999999999988887654321100     01


Q ss_pred             EeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEE--e
Q 019349          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYS--F  218 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~--~  218 (342)
                      +...+++..+..... .++.+.+++.....     ..+...+....+++++..++.++.++++ .+|++..++....  .
T Consensus       162 ~~~~~dg~~~~v~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~  234 (355)
T d2bbkh_         162 FMHCRDGSLAKVAFG-TEGTPEITHTEVFH-----PEDEFLINHPAYSQKAGRLVWPTYTGKI-HQIDLSSGDAKFLPAV  234 (355)
T ss_dssp             EEEETTSCEEEEECC-SSSCCEEEECCCCS-----CTTSCBCSCCEEETTTTEEEEEBTTSEE-EEEECTTSSCEECCCE
T ss_pred             EEEcCCCCEEEEEec-CCCeEEEEeccccc-----ceecceeeeccccCCCCeEEEecCCCeE-EEEecCCCcEEEEecc
Confidence            111222223322221 23333333333221     1344556677888899999999999985 7999987754211  1


Q ss_pred             ccC--------cCceeEEEEEEecCCCcccEEEEEeCC----------CcEEEEecCCCCC
Q 019349          219 RRG--------TYPSTIFSLSFGQSMQFQDILVATSSS----------GSLHVFSPGFAIN  261 (342)
Q Consensus       219 ~~~--------~~~~~v~~l~fs~d~~~~~~l~~~s~d----------g~i~vwd~~~~~~  261 (342)
                      ...        ..+.....+++++++.   .++..+.+          ++|.+||+.+.+.
T Consensus       235 ~~~~~~~~~~~~~p~~~~~~~~~~d~~---~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~  292 (355)
T d2bbkh_         235 EALTEAERADGWRPGGWQQVAYHRALD---RIYLLVDQRDEWRHKTASRFVVVLDAKTGER  292 (355)
T ss_dssp             ESSCHHHHHTTEEECSSSCEEEETTTT---EEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             CCcccceEeeeeeccceEEEEEeCCCC---eEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence            000        0011133578999998   77666544          3699999887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.55  E-value=3.3e-12  Score=112.59  Aligned_cols=74  Identities=14%  Similarity=0.051  Sum_probs=57.6

Q ss_pred             CccEEEEEEccCCceeEEEecccCCeeEEEECCCCCE--EEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEec
Q 019349          157 TKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMY--IATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQ  234 (342)
Q Consensus       157 ~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~--lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~  234 (342)
                      .++.|.+||..+++.+..+. +...+..++|+|||+.  +++++.|++ |++||+.+|+.+.++....  .....|++.+
T Consensus       296 ~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~-v~v~D~~tg~~~~~~~~~g--~~P~~l~~~~  371 (373)
T d2madh_         296 AAKEVTSVTGLVGQTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEV-LHIYDAGAGDQDQSTVELG--SGPQVLSVMN  371 (373)
T ss_pred             CCCeEEEEECCCCcEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCe-EEEEECCCCCEEEEECCCC--CCCcEEEEec
Confidence            35789999999999888775 5677899999999984  578888987 5899999999999886332  2245555544

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=6.1e-13  Score=117.74  Aligned_cols=237  Identities=11%  Similarity=-0.010  Sum_probs=150.9

Q ss_pred             EEEEcCCCCEEEEEc-----------CCcEEEEeCCCCcEEEEEeeC---------CEEEEEEcCCCCeEEEEcCCCCCC
Q 019349           12 FVSFNQDNSGFALST-----------KDGFKIFDSSTGRLCYERAVG---------AFSIVEMLYSSSLLAIVGAGEQPS   71 (342)
Q Consensus        12 ~l~fs~d~~~la~g~-----------~~g~~v~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~g~~~~   71 (342)
                      .++|+|||+.|++++           ++.+++||..+++.+.....+         ....+.+.++++.+++...     
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~-----  143 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLF-----  143 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEEC-----
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeC-----
Confidence            589999999988765           234799999999877654321         1113567888888887764     


Q ss_pred             CCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCC----CCceEEEEeeCCC
Q 019349           72 LSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVP----NLKGLCAFSPSLN  146 (342)
Q Consensus        72 ~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~  146 (342)
                       .++.+.+||+.+++.+..+..+.........+...+... |+++.++++.............    .........+.++
T Consensus       144 -~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (368)
T d1mdah_         144 -GSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYP  222 (368)
T ss_dssp             -SSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTT
T ss_pred             -CCCeEEEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccC
Confidence             478999999999999888876553222222233333322 8888888887654333321111    1112223455566


Q ss_pred             ccEEEEeCCCCccEEEEEEccCCceeEEE--ec----------ccCCeeEEEECCCCCEEEEEeCCC--------cEEEE
Q 019349          147 ACFLAVPASTTKGSVLVYNVMELHSHCEI--DA----------HQAPLAAIVLSSNGMYIATASEQG--------TIIRV  206 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~~~~~~~--~~----------h~~~v~~i~~s~dg~~lat~s~dg--------~~irl  206 (342)
                      +..+...    .+.+.++++...+.....  ..          .......+++++++..+.....++        ..|.+
T Consensus       223 g~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v  298 (368)
T d1mdah_         223 GMLVWAV----ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSS  298 (368)
T ss_dssp             TEEEECB----SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEE
T ss_pred             cEEEEec----CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEE
Confidence            6555433    355777776554432211  11          112234588999998876654322        23679


Q ss_pred             EEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE-EEEEeCCCcEEEEecCCCCCCC
Q 019349          207 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI-LVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       207 wd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~-l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      ||..+++.+..+..   ...+.+++|+||++  .+ ++++..+++|+|||..+++..+
T Consensus       299 ~D~~t~~~~~~~~~---~~~~~~~a~spDG~--~~ly~s~~~~~~v~v~D~~tgk~~~  351 (368)
T d1mdah_         299 VTASVGQTSGPISN---GHDSDAIIAAQDGA--SDNYANSAGTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             EESSSCCEEECCEE---EEEECEEEECCSSS--CEEEEEETTTTEEEEEESSSCEEEE
T ss_pred             EECCCCcEeEEecC---CCceeEEEECCCCC--EEEEEEeCCCCeEEEEECCCCCEEE
Confidence            99999998877643   34588999999986  23 4666789999999999887543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.36  E-value=6.4e-09  Score=87.88  Aligned_cols=236  Identities=14%  Similarity=0.150  Sum_probs=152.6

Q ss_pred             CeEEEEEcCCCCEEEEEcC-CcEEEEeCCCCcEEEEEee-----C---CEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEE
Q 019349            9 PVFFVSFNQDNSGFALSTK-DGFKIFDSSTGRLCYERAV-----G---AFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCL   79 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~-~g~~v~d~~~~~~~~~~~~-----~---~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~i   79 (342)
                      ....|+++++|+.+++-.. +-+++||.+ ++.+.....     +   .-.-+....+....+++..+     .++.|..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~-----~~~~i~~   97 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS-----PTHQIQI   97 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG-----GGCEEEE
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccC-----Ccccccc
Confidence            3579999999997766543 347999965 554433211     0   11122333333333333321     3567777


Q ss_pred             EECCCCcEEEEEecC--CceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           80 FNTTTGTALRELNFL--TSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        80 wd~~~~~~~~~~~~~--~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      ++. .++....+...  .....+++.++..+...   .+.+.+++. +++.+..+....+......++.++++..+++..
T Consensus        98 ~~~-~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~  175 (279)
T d1q7fa_          98 YNQ-YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN  175 (279)
T ss_dssp             ECT-TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred             ccc-cccceeecCCCcccccceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeec
Confidence            775 56666666433  35678888776544444   346777774 466777776555555566667777776666555


Q ss_pred             CCCccEEEEEEccCCceeEEEe--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEE
Q 019349          155 STTKGSVLVYNVMELHSHCEID--AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSF  232 (342)
Q Consensus       155 ~~~~g~i~iwd~~~~~~~~~~~--~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~f  232 (342)
                        ..+.|++||.. ++.+.++.  ++......|+++++|+.+++-+.++..|.+|+ .+|+.+..+...........|++
T Consensus       176 --~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav  251 (279)
T d1q7fa_         176 --RAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVAL  251 (279)
T ss_dssp             --GGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEE
T ss_pred             --cccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEE
Confidence              57899999964 56666663  34556789999999998877654444467888 46888777754433345788999


Q ss_pred             ecCCCcccEEEEEeCCCcEEEEecCCCC
Q 019349          233 GQSMQFQDILVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       233 s~d~~~~~~l~~~s~dg~i~vwd~~~~~  260 (342)
                      .||+.    |++++.++.|++|...+..
T Consensus       252 ~~dG~----l~V~~~n~~v~~fr~~~~~  275 (279)
T d1q7fa_         252 MDDGS----VVLASKDYRLYIYRYVQLA  275 (279)
T ss_dssp             ETTTE----EEEEETTTEEEEEECSCCC
T ss_pred             eCCCc----EEEEeCCCeEEEEEeeeec
Confidence            99996    5556678999999977654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.23  E-value=4.8e-10  Score=100.08  Aligned_cols=221  Identities=13%  Similarity=0.078  Sum_probs=139.3

Q ss_pred             EEEEcCCc-EEEEeCCCCcEEEEEee--------------------------------CCEEEEEEcCCCCeEEEEcCCC
Q 019349           22 FALSTKDG-FKIFDSSTGRLCYERAV--------------------------------GAFSIVEMLYSSSLLAIVGAGE   68 (342)
Q Consensus        22 la~g~~~g-~~v~d~~~~~~~~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~g~   68 (342)
                      +++|+..| ++||++.+++.+.....                                .....+...++++++.+...  
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~--   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK--   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET--
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC--
Confidence            34555555 79999988877654210                                01111222345556655554  


Q ss_pred             CCCCCCCeEEEEECCCCcEEEEEec--CCceEEEEEcCCe--EEEEE--CCeE------------------EEEECCCCc
Q 019349           69 QPSLSPRRLCLFNTTTGTALRELNF--LTSILAVRLNKKR--LVIVL--REKT------------------YIYDANTLA  124 (342)
Q Consensus        69 ~~~~~d~~i~iwd~~~~~~~~~~~~--~~~v~~i~~~~~~--~~~~~--d~~i------------------~i~d~~~~~  124 (342)
                          .+++|.++|+.+++....+..  ...+..++++++.  .+++.  ++.+                  ..+|..+.+
T Consensus        92 ----~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~  167 (441)
T d1qnia2          92 ----ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD  167 (441)
T ss_dssp             ----TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred             ----CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce
Confidence                478999999999998876665  3478899998653  24432  3333                  458888888


Q ss_pred             eeeEEeCCCCCceEEEEeeCCCccEEEEeCCC---------------------------------------CccEEEEEE
Q 019349          125 ILDTIDTVPNLKGLCAFSPSLNACFLAVPAST---------------------------------------TKGSVLVYN  165 (342)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------------------------------------~~g~i~iwd  165 (342)
                      ...++....++..   +..+|++.+++++...                                       .++.+.+++
T Consensus       168 v~~qI~v~~~p~~---v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~  244 (441)
T d1qnia2         168 VAWQVIVDGNLDN---TDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDG  244 (441)
T ss_dssp             EEEEEEESSCCCC---EEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEEC
T ss_pred             eeEEEecCCCccc---eEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEc
Confidence            8777766554332   2344555555444311                                       135556666


Q ss_pred             ccCCceeEEEecccCCeeEEEECCCCCEEEE-EeCCCcEEEEEEcCCCeeE-----------EEeccCcCceeEEEEEEe
Q 019349          166 VMELHSHCEIDAHQAPLAAIVLSSNGMYIAT-ASEQGTIIRVFLVSEATKS-----------YSFRRGTYPSTIFSLSFG  233 (342)
Q Consensus       166 ~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat-~s~dg~~irlwd~~~~~~~-----------~~~~~~~~~~~v~~l~fs  233 (342)
                      ....+.+..++.+++| ..+.++|||++++. +..+++ +.+||+.+.+..           ... .....+ ....+|.
T Consensus       245 ~~~~~v~~~IPvgksP-hGv~vSPDGkyl~~~~~~~~t-vsv~d~~k~~~~~~~~~~~~~~~~~~-~~~glg-plh~~fd  320 (441)
T d1qnia2         245 RGESEFTRYIPVPKNP-HGLNTSPDGKYFIANGKLSPT-VSVIAIDKLDDLFEDKIELRDTIVAE-PELGLG-PLHTTFD  320 (441)
T ss_dssp             SSSCSSEEEECCBSSC-CCEEECTTSCEEEEECTTSSB-EEEEEGGGHHHHTTTSSCGGGGEEEC-CBCCSC-EEEEEEC
T ss_pred             ccCCceEEEEeCCCCc-cCceECCCCCEEEEeCCcCCc-EEEEEeehhhhHhhccCCcceEEEee-cccccC-cccceec
Confidence            6666677778776664 77999999998755 556666 589998653311           000 000011 3446899


Q ss_pred             cCCCcccEEEEEeCCCcEEEEecCC
Q 019349          234 QSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       234 ~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      +++.   .+.+...|..|..|+++.
T Consensus       321 ~~g~---~yts~~~ds~v~kw~~~~  342 (441)
T d1qnia2         321 GRGN---AYTTLFIDSQVCKWNIAD  342 (441)
T ss_dssp             SSSE---EEEEETTTTEEEEEEHHH
T ss_pred             CCce---EEEcccccceEEEeccch
Confidence            9997   888889999999999854

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.21  E-value=3.5e-10  Score=99.57  Aligned_cols=204  Identities=8%  Similarity=-0.023  Sum_probs=123.7

Q ss_pred             EEEEEcCCCCEEEEEcC--CcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEE
Q 019349           11 FFVSFNQDNSGFALSTK--DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTAL   88 (342)
Q Consensus        11 ~~l~fs~d~~~la~g~~--~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~   88 (342)
                      ..++|+|||++|+++..  +.+.+||+.+++............+..  ......+...      .|+++.+|++..+...
T Consensus       127 ~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~~------~Dg~~~~~~~~~~~~~  198 (368)
T d1mdah_         127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHP--GAAATHYLGS------CPASLAASDLAAAPAA  198 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEE--EETTEEECCC------CTTSCEEEECCSSCCC
T ss_pred             cceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEcc--CCCceEEEEc------CCCCEEEEEecCCcee
Confidence            36899999999987753  347999999998776554332221111  1122222222      3788888887654433


Q ss_pred             EEEec-------CCceEEEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCC------------CCceEEEEeeCCCcc
Q 019349           89 RELNF-------LTSILAVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVP------------NLKGLCAFSPSLNAC  148 (342)
Q Consensus        89 ~~~~~-------~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~  148 (342)
                      .....       ...+....+.++...+.. .+.++++++...+.........            ......+++++++..
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~  278 (368)
T d1mdah_         199 AGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGI  278 (368)
T ss_dssp             CEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEE
T ss_pred             eeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEE
Confidence            22211       113345666666666555 5678888876654332221111            011234455544433


Q ss_pred             EEEEeCC-----CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCC-E-EEEEeCCCcEEEEEEcCCCeeEEEeccC
Q 019349          149 FLAVPAS-----TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGM-Y-IATASEQGTIIRVFLVSEATKSYSFRRG  221 (342)
Q Consensus       149 ~l~~~~~-----~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~-~-lat~s~dg~~irlwd~~~~~~~~~~~~~  221 (342)
                      +++....     .....|.+||..+++.+.++.. ...+.+++|+|||+ + +++++.|++ |++||..+|+.+.+++.+
T Consensus       279 ~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~-v~v~D~~tgk~~~~i~~g  356 (368)
T d1mdah_         279 MILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEV-LDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECCSSSCEEEEEETTTTE-EEEEESSSCEEEEECCCC
T ss_pred             EEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCe-EEEEECCCCCEEEEEECC
Confidence            3332211     0235799999999998887764 45789999999997 3 466677776 589999999999998765


Q ss_pred             cCc
Q 019349          222 TYP  224 (342)
Q Consensus       222 ~~~  224 (342)
                      ..+
T Consensus       357 ~~P  359 (368)
T d1mdah_         357 KGP  359 (368)
T ss_dssp             SCC
T ss_pred             CCC
Confidence            444

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.15  E-value=1.1e-09  Score=97.80  Aligned_cols=239  Identities=7%  Similarity=-0.013  Sum_probs=144.7

Q ss_pred             CeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecC------------------------------Cc-eEEEEEcCC--
Q 019349           59 SLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFL------------------------------TS-ILAVRLNKK--  105 (342)
Q Consensus        59 ~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~------------------------------~~-v~~i~~~~~--  105 (342)
                      .+.+++++|     .+++|.+||+.+++.+..+..-                              .+ .......+|  
T Consensus        10 e~y~f~Sgg-----~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr   84 (441)
T d1qnia2          10 EYYGFWSGG-----HQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGK   84 (441)
T ss_dssp             SEEEEEECB-----TTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEE
T ss_pred             CEEEEEeCC-----CCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCC
Confidence            456677775     6899999999999988876320                              01 111112334  


Q ss_pred             eEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCcc--EEEEeCCC---------------CccEEEEEEc
Q 019349          106 RLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNAC--FLAVPAST---------------TKGSVLVYNV  166 (342)
Q Consensus       106 ~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~---------------~~g~i~iwd~  166 (342)
                      .+++..  +++|.++|+.+++..+.+..+ +..+...++++++++  +++..+..               ....+..+|.
T Consensus        85 ~lfV~d~~~~rVavIDl~t~k~~~ii~iP-~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~  163 (441)
T d1qnia2          85 YLFINDKANTRVARIRLDIMKTDKITHIP-NVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA  163 (441)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECT-TCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred             EEEEEcCCCCEEEEEECCCCcEeeEEecC-CCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence            344444  679999999999888776543 223455555555444  55544310               0123466888


Q ss_pred             cCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC----------------------------------------cEEEE
Q 019349          167 MELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG----------------------------------------TIIRV  206 (342)
Q Consensus       167 ~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg----------------------------------------~~irl  206 (342)
                      .+.+...++.... .+..++|+|||+++++++.+.                                        .++.+
T Consensus       164 ~t~~v~~qI~v~~-~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vv  242 (441)
T d1qnia2         164 ETMDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVV  242 (441)
T ss_dssp             TTCSEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEE
T ss_pred             ccceeeEEEecCC-CccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEE
Confidence            8888777776543 468899999999998887542                                        12235


Q ss_pred             EEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEE-EEEeCCCcEEEEecCCCCCCCCCCCcccccccccccccccccc
Q 019349          207 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDIL-VATSSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEVLD  285 (342)
Q Consensus       207 wd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l-~~~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  285 (342)
                      ++....+.+..++.+..   ...++++|||+   ++ +++..+++|.|||+++....-         ...+.........
T Consensus       243 d~~~~~~v~~~IPvgks---PhGv~vSPDGk---yl~~~~~~~~tvsv~d~~k~~~~~---------~~~~~~~~~~~~~  307 (441)
T d1qnia2         243 DGRGESEFTRYIPVPKN---PHGLNTSPDGK---YFIANGKLSPTVSVIAIDKLDDLF---------EDKIELRDTIVAE  307 (441)
T ss_dssp             ECSSSCSSEEEECCBSS---CCCEEECTTSC---EEEEECTTSSBEEEEEGGGHHHHT---------TTSSCGGGGEEEC
T ss_pred             EcccCCceEEEEeCCCC---ccCceECCCCC---EEEEeCCcCCcEEEEEeehhhhHh---------hccCCcceEEEee
Confidence            55554455555544322   46789999999   65 556789999999997643211         0001000000011


Q ss_pred             ccccceeeeccCCCccccEEEEEEeCCcEEEEEEe
Q 019349          286 PADHHVLRNAFPAGVKRASVSVITYNGYFVEYIFS  320 (342)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~l~~~~~dg~v~~~~~~  320 (342)
                      +. ..+...+..|.++++.+.+...|.+|..|+++
T Consensus       308 ~~-~glgplh~~fd~~g~~yts~~~ds~v~kw~~~  341 (441)
T d1qnia2         308 PE-LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIA  341 (441)
T ss_dssp             CB-CCSCEEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred             cc-cccCcccceecCCceEEEcccccceEEEeccc
Confidence            10 01111233456666777788889999999975

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.09  E-value=2.1e-08  Score=88.11  Aligned_cols=244  Identities=12%  Similarity=0.107  Sum_probs=132.9

Q ss_pred             CCCeEEEEEcCCCCEEEEEcCCcEEEEeCCCC-cEEEE-Eee--CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEE----
Q 019349            7 SYPVFFVSFNQDNSGFALSTKDGFKIFDSSTG-RLCYE-RAV--GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLC----   78 (342)
Q Consensus         7 ~~~V~~l~fs~d~~~la~g~~~g~~v~d~~~~-~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~----   78 (342)
                      ..++..|+|+||+++|.+...+.+..|.++.. .+... ...  +....+.+..+++.+.++...    +..+++.    
T Consensus        39 ~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~----~~~~~v~~~~~  114 (365)
T d1jofa_          39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAK----QPPYAVYANPF  114 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECS----STTCCEEEEEE
T ss_pred             CCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEec----CCCCEEEEeEc
Confidence            44567899999999998887777777765432 22221 111  111112222333332222221    0123333    


Q ss_pred             --------EEECCC-CcE---EEEEe--cCCceEEEEEcCCe--EEEEE--CCeEEEEECCCC-ce--eeEEeCCCCCce
Q 019349           79 --------LFNTTT-GTA---LRELN--FLTSILAVRLNKKR--LVIVL--REKTYIYDANTL-AI--LDTIDTVPNLKG  137 (342)
Q Consensus        79 --------iwd~~~-~~~---~~~~~--~~~~v~~i~~~~~~--~~~~~--d~~i~i~d~~~~-~~--~~~~~~~~~~~~  137 (342)
                              +..+.. ++.   .....  ....+.++.++|++  ++++.  .++|.+|++... +.  ...........+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~g  194 (365)
T d1jofa_         115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH  194 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC
T ss_pred             cCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCc
Confidence                    333221 111   11111  12357889998875  44444  468999987543 22  223333333345


Q ss_pred             EEEEeeCCCccEEEEeCCCCccEEEEEEccCCcee--EEEe-----------------cccCCeeEEEECCCCCEEEEEe
Q 019349          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSH--CEID-----------------AHQAPLAAIVLSSNGMYIATAS  198 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~--~~~~-----------------~h~~~v~~i~~s~dg~~lat~s  198 (342)
                      ...+.++|++.++.+... .+++|.+|++...+..  ....                 .+......|.++|||++|+++.
T Consensus       195 Pr~i~f~pdg~~~yv~~e-~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsn  273 (365)
T d1jofa_         195 PRWVAMHPTGNYLYALME-AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             EEEEEECTTSSEEEEEET-TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             eEEEEECCCCceEEEecc-CCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEc
Confidence            666777888887766664 6899999998765422  1111                 1112355789999999988874


Q ss_pred             C--C----CcEEEEEEcCCCeeEE---Eecc-CcCceeEEEEEEec-CCCcccEEEEE-eCCCcEEEEecCCC
Q 019349          199 E--Q----GTIIRVFLVSEATKSY---SFRR-GTYPSTIFSLSFGQ-SMQFQDILVAT-SSSGSLHVFSPGFA  259 (342)
Q Consensus       199 ~--d----g~~irlwd~~~~~~~~---~~~~-~~~~~~v~~l~fs~-d~~~~~~l~~~-s~dg~i~vwd~~~~  259 (342)
                      .  +    +.+ -.|++.....+.   .+.. .........++|+| +|+   +|+++ ..+++|.+|+++..
T Consensus       274 r~~~~~~~~~i-~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~---~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         274 RANKFELQGYI-AGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDE---WMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EESSTTSCCEE-EEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTT---EEEEECSSSCEEEEEEEETT
T ss_pred             ccCCCccceEE-EEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCC---EEEEEeCCCCeEEEEEEeCC
Confidence            2  1    223 467765432221   1111 00112246689998 788   77666 56789999987543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.98  E-value=2.3e-09  Score=97.43  Aligned_cols=152  Identities=11%  Similarity=0.044  Sum_probs=107.4

Q ss_pred             EEEEcCCeEEEEE-CCeEEEEECCCCceeeEEeCCC---CCceEEEEeeCCCccEEEEeCC-------CCccEEEEEEcc
Q 019349           99 AVRLNKKRLVIVL-REKTYIYDANTLAILDTIDTVP---NLKGLCAFSPSLNACFLAVPAS-------TTKGSVLVYNVM  167 (342)
Q Consensus        99 ~i~~~~~~~~~~~-d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~-------~~~g~i~iwd~~  167 (342)
                      .+.|.++.-++.. ++.+++||+.+++....+..+.   ....+..+.++||+.+|++...       ..++.+.+||+.
T Consensus        21 ~~~W~~d~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~  100 (470)
T d2bgra1          21 SLRWISDHEYLYKQENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLN  100 (470)
T ss_dssp             CCEECSSSEEEEESSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             CCEeCCCCEEEEEcCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECC
Confidence            4566666655555 7799999999998765554321   2235677888899999987631       135789999999


Q ss_pred             CCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC----------------ceeEEEEE
Q 019349          168 ELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY----------------PSTIFSLS  231 (342)
Q Consensus       168 ~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~----------------~~~v~~l~  231 (342)
                      +++ +..+..|...+..+.|||||++||.... +. +.+|+..+++.......+..                ......+.
T Consensus       101 ~~~-~~~l~~~~~~~~~~~~SPDG~~ia~~~~-~~-l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~  177 (470)
T d2bgra1         101 KRQ-LITEERIPNNTQWVTWSPVGHKLAYVWN-ND-IYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALW  177 (470)
T ss_dssp             TTE-ECCSSCCCTTEEEEEECSSTTCEEEEET-TE-EEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEE
T ss_pred             CCc-ccccccCCccccccccccCcceeeEeec-cc-ceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccE
Confidence            886 4567788899999999999999999764 45 47999998876543322110                01134578


Q ss_pred             EecCCCcccEEEEEeCCCc-EEEEec
Q 019349          232 FGQSMQFQDILVATSSSGS-LHVFSP  256 (342)
Q Consensus       232 fs~d~~~~~~l~~~s~dg~-i~vwd~  256 (342)
                      |||||+   +||....|.+ +..|.+
T Consensus       178 wSPDGk---~ia~~~~d~~~v~~~~~  200 (470)
T d2bgra1         178 WSPNGT---FLAYAQFNDTEVPLIEY  200 (470)
T ss_dssp             ECTTSS---EEEEEEEECTTCCEEEE
T ss_pred             ECCCCC---ccceeEecCCcCceEEE
Confidence            999999   9999876644 554443

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.90  E-value=4.5e-06  Score=70.63  Aligned_cols=226  Identities=11%  Similarity=0.023  Sum_probs=132.9

Q ss_pred             CCeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCC--
Q 019349            8 YPVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTT--   84 (342)
Q Consensus         8 ~~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~--   84 (342)
                      .-+..++++|||+++++...++ +..|+.+.....+....+....+.+..+++.++....       .+.+..|+...  
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~gla~~~dG~l~v~~~~-------~~~~~~~~~~~~~  100 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVSGLAFTSNGDLVATGWN-------ADSIPVVSLVKSD  100 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEEEEEECTTSCEEEEEEC-------TTSCEEEEEECTT
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcceEEEcCCCCeEEEecC-------CceEEEEEecccc
Confidence            3477899999999888877665 5667755443333333455666777777775544333       56666666543  


Q ss_pred             CcEEEEEe--cCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceeeEEeC--------CCCCceEEEEeeCCCccEEE
Q 019349           85 GTALRELN--FLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILDTIDT--------VPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        85 ~~~~~~~~--~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~  151 (342)
                      +....-..  .......+.+.++..+.+.   .+.+..++...+........        .........++.+++  .+.
T Consensus       101 ~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~~--~l~  178 (302)
T d2p4oa1         101 GTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGN--FLY  178 (302)
T ss_dssp             SCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETT--EEE
T ss_pred             cceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccCC--cee
Confidence            22222222  2346788999888776666   45788888776643322211        111123345555554  333


Q ss_pred             EeCCCCccEEEEEEccCCceeE--EEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349          152 VPASTTKGSVLVYNVMELHSHC--EIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  229 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~~~~~~--~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~  229 (342)
                      .+.. ..+.|..++........  ....+......|+|++||++.++...++++ ..++.. |+..............++
T Consensus       179 ~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V-~~i~p~-G~~~~~~~~~~~~~~pt~  255 (302)
T d2p4oa1         179 VSNT-EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSV-VRIAPD-RSTTIIAQAEQGVIGSTA  255 (302)
T ss_dssp             EEET-TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCE-EEECTT-CCEEEEECGGGTCTTEEE
T ss_pred             eecC-CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcE-EEECCC-CCEEEEEecCCCCCCceE
Confidence            3333 57889988876543221  111233456789999999988888788885 467664 443222111111223789


Q ss_pred             EEE---ecCCCcccEEEEEeCC
Q 019349          230 LSF---GQSMQFQDILVATSSS  248 (342)
Q Consensus       230 l~f---s~d~~~~~~l~~~s~d  248 (342)
                      ++|   ++|++   .|.+++..
T Consensus       256 vafg~~~~D~~---~Lyvtt~~  274 (302)
T d2p4oa1         256 VAFGQTEGDCT---AIYVVTNG  274 (302)
T ss_dssp             EEECCSTTTTT---EEEEEECT
T ss_pred             EEEcCCCCCCC---EEEEECCC
Confidence            999   67887   77766554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.87  E-value=3e-06  Score=69.94  Aligned_cols=216  Identities=14%  Similarity=0.080  Sum_probs=122.8

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcC-Cc---EEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEE
Q 019349            6 SSYPVFFVSFNQDNSGFALSTK-DG---FKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLF   80 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~-~g---~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iw   80 (342)
                      ....+.+-+|||||+.||-... .+   +.+.+...+... ............+.+++..+++.....    ....+..+
T Consensus        37 ~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~~----~~~~~~~~  112 (269)
T d2hqsa1          37 SPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFALSKT----GSLNLYVM  112 (269)
T ss_dssp             ESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEEECTT----SSCEEEEE
T ss_pred             CCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecccccceecCCCCeeeEeeecC----Cccceeec
Confidence            3456788999999999986543 33   355566666443 333345566677888888888776531    11233334


Q ss_pred             ECCCCcEEEEEecCCceEEEEEc--CCeEEEEE--CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           81 NTTTGTALRELNFLTSILAVRLN--KKRLVIVL--RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        81 d~~~~~~~~~~~~~~~v~~i~~~--~~~~~~~~--d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      .....................+.  .+......  ++  .|.+.++..+... .+.  ...........+|++..+++..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~--~~~~~~~~~~~spdg~~~~~~~  189 (269)
T d2hqsa1         113 DLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RIT--WEGSQNQDADVSSDGKFMVMVS  189 (269)
T ss_dssp             ETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECC--CSSSEEEEEEECTTSSEEEEEE
T ss_pred             ccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eee--cccccccccccccccceeEEEe
Confidence            33333333333222232222333  33344444  33  6777777665322 111  2223344556778888888765


Q ss_pred             CCCccEEEEE--EccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCC--cEEEEEEcCCCeeEEEeccCcCceeEEEE
Q 019349          155 STTKGSVLVY--NVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQG--TIIRVFLVSEATKSYSFRRGTYPSTIFSL  230 (342)
Q Consensus       155 ~~~~g~i~iw--d~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg--~~irlwd~~~~~~~~~~~~~~~~~~v~~l  230 (342)
                      . ..|...+|  |...+.  ..+..+........|||||++||-.+..+  ..+.++++..+.. ..+...  ...+...
T Consensus       190 ~-~~~~~~i~~~~~~~~~--~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~-~~lt~~--~g~~~~p  263 (269)
T d2hqsa1         190 S-NGGQQHIAKQDLATGG--VQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK-ARLPAT--DGQVKFP  263 (269)
T ss_dssp             E-CSSCEEEEEEETTTCC--EEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE-EECCCS--SSEEEEE
T ss_pred             e-cCCceeeeEeeccccc--ceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE-EEEeCC--CCcEEeE
Confidence            4 34544554  444443  23334555667889999999998766443  2356889876554 444332  4457788


Q ss_pred             EEec
Q 019349          231 SFGQ  234 (342)
Q Consensus       231 ~fs~  234 (342)
                      +|||
T Consensus       264 ~WSP  267 (269)
T d2hqsa1         264 AWSP  267 (269)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9998

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.85  E-value=1.3e-08  Score=92.33  Aligned_cols=111  Identities=12%  Similarity=0.113  Sum_probs=82.7

Q ss_pred             EeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe-----cccCCeeEEEECCCCCEEEEEeC---------CCcEEEE
Q 019349          141 FSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID-----AHQAPLAAIVLSSNGMYIATASE---------QGTIIRV  206 (342)
Q Consensus       141 ~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-----~h~~~v~~i~~s~dg~~lat~s~---------dg~~irl  206 (342)
                      +.+.+++.++..    .++.|.+||+.+++....+.     .|...|.++.|||||++||.++.         ++. +.+
T Consensus        22 ~~W~~d~~~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~-~~l   96 (470)
T d2bgra1          22 LRWISDHEYLYK----QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS-YDI   96 (470)
T ss_dssp             CEECSSSEEEEE----SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE-EEE
T ss_pred             CEeCCCCEEEEE----cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCce-EEE
Confidence            345566666653    35779999999998765554     45578999999999999999864         344 469


Q ss_pred             EEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCCC
Q 019349          207 FLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQR  263 (342)
Q Consensus       207 wd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~~  263 (342)
                      ||+.+++.. .+..  ++..+..+.|||||+   +||.. .++.+++|++..+...+
T Consensus        97 ~d~~~~~~~-~l~~--~~~~~~~~~~SPDG~---~ia~~-~~~~l~~~~~~~g~~~~  146 (470)
T d2bgra1          97 YDLNKRQLI-TEER--IPNNTQWVTWSPVGH---KLAYV-WNNDIYVKIEPNLPSYR  146 (470)
T ss_dssp             EETTTTEEC-CSSC--CCTTEEEEEECSSTT---CEEEE-ETTEEEEESSTTSCCEE
T ss_pred             EECCCCccc-cccc--CCccccccccccCcc---eeeEe-ecccceEEECCCCceee
Confidence            999988743 3332  345588999999999   78875 56789999998776543

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.75  E-value=1.8e-06  Score=71.48  Aligned_cols=229  Identities=8%  Similarity=0.013  Sum_probs=127.9

Q ss_pred             eEEEEEcCCCCEEEEEc-CCc-EEEEeCCCCcE-EEEEee-CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349           10 VFFVSFNQDNSGFALST-KDG-FKIFDSSTGRL-CYERAV-GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~-~~g-~~v~d~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~   85 (342)
                      -..|+++++|+..++.. ..+ +..++...... ...... .....+.+..+.+. .++..      ..+.+++++..++
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i-~v~d~------~~~~i~~~~~~~~   88 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTV-YVTDF------NNRVVTLAAGSNN   88 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCE-EEEET------TTEEEEECTTCSC
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCE-EEeee------eeceeeeeeeccc
Confidence            47999999999766554 334 45555443322 111111 11122344444443 33332      3556666665555


Q ss_pred             cEEEEEecCCceEEEEEcCCeEEEEE---CCeEEEEECCCCceee-EEeCCCCCceEEEEeeCCCccEEEEeCCCCccEE
Q 019349           86 TALRELNFLTSILAVRLNKKRLVIVL---REKTYIYDANTLAILD-TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSV  161 (342)
Q Consensus        86 ~~~~~~~~~~~v~~i~~~~~~~~~~~---d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i  161 (342)
                      ..+.....-....+++++++..+.+.   .+.+..++........ .......+   .+++.++++..+++..  .++.|
T Consensus        89 ~~~~~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p---~~i~~~~~g~~~v~~~--~~~~i  163 (260)
T d1rwia_          89 QTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDP---DGVAVDNSGNVYVTDT--DNNRV  163 (260)
T ss_dssp             CEECCCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSC---CEEEECTTCCEEEEEG--GGTEE
T ss_pred             eeeeeeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCc---ceeeecCCCCEeeecc--ccccc
Confidence            55443333356788999777544444   4467777664432211 11111222   2345556666655544  46889


Q ss_pred             EEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349          162 LVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI  241 (342)
Q Consensus       162 ~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~  241 (342)
                      ..+|.............-.....|+++++|+++++....++++ .++.... ....+.. ..-.....|++++++.   +
T Consensus       164 ~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~-~~~~~~~-~~~~~~~-~~~~~P~~i~~d~~g~---l  237 (260)
T d1rwia_         164 VKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVV-KLLAGST-TSTVLPF-TGLNTPLAVAVDSDRT---V  237 (260)
T ss_dssp             EEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEE-EECTTCS-CCEECCC-CSCCCEEEEEECTTCC---E
T ss_pred             cccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEE-EEeCCCC-eEEEEcc-CCCCCeEEEEEeCCCC---E
Confidence            9999775543332224445678999999999888887777654 5665433 2233321 1123467899999998   7


Q ss_pred             EEEEeCCCcEEEEec
Q 019349          242 LVATSSSGSLHVFSP  256 (342)
Q Consensus       242 l~~~s~dg~i~vwd~  256 (342)
                      +++-..+++|+.++.
T Consensus       238 ~vad~~~~rI~~i~~  252 (260)
T d1rwia_         238 YVADRGNDRVVKLTS  252 (260)
T ss_dssp             EEEEGGGTEEEEECC
T ss_pred             EEEECCCCEEEEEeC
Confidence            777777777776654

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.73  E-value=1.1e-05  Score=70.15  Aligned_cols=118  Identities=14%  Similarity=0.102  Sum_probs=76.4

Q ss_pred             EEEEeeCCCccEEEEeCCCCccEEEEEEccCC-ce--eEEEe--cccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC
Q 019349          138 LCAFSPSLNACFLAVPASTTKGSVLVYNVMEL-HS--HCEID--AHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA  212 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~-~~--~~~~~--~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~  212 (342)
                      ..++.++|+++++++++. ....|.+|+.... +.  ...+.  ........++|+|||+++....+.+..|.+|++..+
T Consensus       147 ~h~v~~sPdG~~l~v~d~-g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         147 IHGMVFDPTETYLYSADL-TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             EEEEEECTTSSEEEEEET-TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             ceEEEECCCCCEEEEeeC-CCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            457788899998888765 4678999886543 22  12222  234568899999999999877766555689998765


Q ss_pred             eeEE--Eecc---------------CcCceeEEEEEEecCCCcccEEEEEeC-C-----CcEEEEecCCC
Q 019349          213 TKSY--SFRR---------------GTYPSTIFSLSFGQSMQFQDILVATSS-S-----GSLHVFSPGFA  259 (342)
Q Consensus       213 ~~~~--~~~~---------------~~~~~~v~~l~fs~d~~~~~~l~~~s~-d-----g~i~vwd~~~~  259 (342)
                      +...  ....               .........+.++||++   +|.++.. +     +.|..|++...
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~---~lyvsnr~~~~~~~~~i~~~~~~~~  292 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGK---YMFASSRANKFELQGYIAGFKLRDC  292 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSS---EEEEEEEESSTTSCCEEEEEEECTT
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCC---EEEEEcccCCCccceEEEEEEecCC
Confidence            4321  1100               00112356789999999   7777642 2     23777777653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=1.7e-05  Score=65.28  Aligned_cols=216  Identities=13%  Similarity=0.054  Sum_probs=120.5

Q ss_pred             EEEeCCCCcE-EEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEE
Q 019349           31 KIFDSSTGRL-CYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVI  109 (342)
Q Consensus        31 ~v~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~  109 (342)
                      .|.|.+.... ........+..-.+.++++.++++....    ....+.+.+...+................++++...+
T Consensus        22 ~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i   97 (269)
T d2hqsa1          22 RVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES----GRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL   97 (269)
T ss_dssp             EEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTT----SSCEEEEEETTTCCEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeec----cCcceeeeecccCceeEEeeeecccccceecCCCCee
Confidence            3445554322 2222345566678999999999887531    2345777787777766666666677888888875444


Q ss_pred             EE----CC--eEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE-EeCCCCccEEEEEEccCCceeEEEecccCCe
Q 019349          110 VL----RE--KTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA-VPASTTKGSVLVYNVMELHSHCEIDAHQAPL  182 (342)
Q Consensus       110 ~~----d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v  182 (342)
                      +.    .+  .+..+............ ...........  +++..+. .........|.+.++..+.. ..+..+....
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~  173 (269)
T d2hqsa1          98 AFALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWF--PDSQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQN  173 (269)
T ss_dssp             EEEECTTSSCEEEEEETTTCCEEECCC-CSSCEEEEEEC--TTSSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEE
T ss_pred             eEeeecCCccceeecccccccceeeee-ccccccccccc--cccccceecccccCCceEeeeecccccc-eeeecccccc
Confidence            33    22  33333333332221111 11111122233  3333333 33221223566666665543 2334455667


Q ss_pred             eEEEECCCCCEEEEEeCCCcEEEEE--EcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCC---CcEEEEecC
Q 019349          183 AAIVLSSNGMYIATASEQGTIIRVF--LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSS---GSLHVFSPG  257 (342)
Q Consensus       183 ~~i~~s~dg~~lat~s~dg~~irlw--d~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~d---g~i~vwd~~  257 (342)
                      ....++|+|+.++..+.++....+|  |...+..  +....  ........|||||+   +|+-.+..   ..|++++++
T Consensus       174 ~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~--~~~~~~p~~SPDG~---~i~f~s~~~~~~~l~~~~~d  246 (269)
T d2hqsa1         174 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV--QVLSS--TFLDETPSLAPNGT---MVIYSSSQGMGSVLNLVSTD  246 (269)
T ss_dssp             EEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE--EECCC--SSSCEEEEECTTSS---EEEEEEEETTEEEEEEEETT
T ss_pred             cccccccccceeEEEeecCCceeeeEeecccccc--eEeec--CccccceEECCCCC---EEEEEEcCCCCcEEEEEECC
Confidence            7788999999999887765433444  4444432  22222  23356778999999   88765543   468899988


Q ss_pred             CCCC
Q 019349          258 FAIN  261 (342)
Q Consensus       258 ~~~~  261 (342)
                      ....
T Consensus       247 g~~~  250 (269)
T d2hqsa1         247 GRFK  250 (269)
T ss_dssp             SCCE
T ss_pred             CCCE
Confidence            6653

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.71  E-value=3.4e-05  Score=65.52  Aligned_cols=236  Identities=11%  Similarity=0.047  Sum_probs=134.2

Q ss_pred             CeEEEEEcCCCCEEEEEcCC--------cEEEEeCCCCcEEEEEe--eC----CEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349            9 PVFFVSFNQDNSGFALSTKD--------GFKIFDSSTGRLCYERA--VG----AFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~--------g~~v~d~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (342)
                      ....++|.++|++.++....        .+..||..++.......  ..    .-.-+.+..+.+.+.++..       .
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~-------~   91 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-------R   91 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-------T
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEEC-------C
Confidence            35678999999977765432        25667877775543221  11    1223455556666666554       4


Q ss_pred             CeEEEEECCCCcEEEEEe-cCC----ceEEEEEcCCeEEEEEC------------------CeEEEEECCCCceeeEEeC
Q 019349           75 RRLCLFNTTTGTALRELN-FLT----SILAVRLNKKRLVIVLR------------------EKTYIYDANTLAILDTIDT  131 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~~~-~~~----~v~~i~~~~~~~~~~~d------------------~~i~i~d~~~~~~~~~~~~  131 (342)
                      +.|...|...+....... ...    ...++.+.+++.+..+|                  +.++.++. +++.......
T Consensus        92 ~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~  170 (314)
T d1pjxa_          92 LGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTA  170 (314)
T ss_dssp             TEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEE
T ss_pred             CeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCC
Confidence            568888876543221111 111    24667887775444432                  12333332 2332222211


Q ss_pred             CCCCceEEEEeeCCCc--cEEEEeCCCCccEEEEEEccCCceeE------EEec-ccCCeeEEEECCCCCEEEEEeCCCc
Q 019349          132 VPNLKGLCAFSPSLNA--CFLAVPASTTKGSVLVYNVMELHSHC------EIDA-HQAPLAAIVLSSNGMYIATASEQGT  202 (342)
Q Consensus       132 ~~~~~~~~~~~~~~~~--~~l~~~~~~~~g~i~iwd~~~~~~~~------~~~~-h~~~v~~i~~s~dg~~lat~s~dg~  202 (342)
                      ...+.+ .++++.+++  ..|..+.. ..+.|..||+.....+.      .+.+ +......|++..+|++.++....+.
T Consensus       171 ~~~pNG-i~~~~d~d~~~~~lyv~d~-~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~  248 (314)
T d1pjxa_         171 FQFPNG-IAVRHMNDGRPYQLIVAET-PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSH  248 (314)
T ss_dssp             ESSEEE-EEEEECTTSCEEEEEEEET-TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTE
T ss_pred             cceeee-eEECCCCCcceeEEEEEee-cccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCE
Confidence            111222 345554432  24444443 57889999876443221      1221 2233568999999998887776776


Q ss_pred             EEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          203 IIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       203 ~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                       |.+||...++.+..+...  .....+++|.||++  .++++.+.+|+|..+++..+
T Consensus       249 -I~~~dp~~g~~~~~i~~p--~~~~t~~afg~d~~--~lyVt~~~~g~i~~~~~~~~  300 (314)
T d1pjxa_         249 -IEVFGPDGGQPKMRIRCP--FEKPSNLHFKPQTK--TIFVTEHENNAVWKFEWQRN  300 (314)
T ss_dssp             -EEEECTTCBSCSEEEECS--SSCEEEEEECTTSS--EEEEEETTTTEEEEEECSSC
T ss_pred             -EEEEeCCCCEEEEEEECC--CCCEEEEEEeCCCC--EEEEEECCCCcEEEEECCCC
Confidence             579998878766655432  23478899999986  14566677888888887644

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.56  E-value=0.00012  Score=60.68  Aligned_cols=188  Identities=11%  Similarity=0.140  Sum_probs=116.9

Q ss_pred             EEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCC-------ceEEEEEc--CCeEEEEE---CCeEEEEE
Q 019349           52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLT-------SILAVRLN--KKRLVIVL---REKTYIYD  119 (342)
Q Consensus        52 ~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~-------~v~~i~~~--~~~~~~~~---d~~i~i~d  119 (342)
                      +++..+.+. .++..      ..+.|++||.. |+.+..+....       ....+.+.  ....+++.   .+.|..++
T Consensus        28 vavd~dg~i-~VaD~------~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~   99 (279)
T d1q7fa_          28 VAVNAQNDI-IVADT------NNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN   99 (279)
T ss_dssp             EEECTTCCE-EEEEG------GGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred             EEEcCCCCE-EEEEC------CCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc
Confidence            455555553 33332      36889999854 77776663211       23444443  23344444   34777777


Q ss_pred             CCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE--ecccCCeeEEEECCCCCEEEEE
Q 019349          120 ANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI--DAHQAPLAAIVLSSNGMYIATA  197 (342)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~--~~h~~~v~~i~~s~dg~~lat~  197 (342)
                      . +++....+... .......++.++++.++++..  ..+.+.+++. +++.+.++  ..+......+++.++|+.+++.
T Consensus       100 ~-~g~~~~~~~~~-~~~~p~~~avd~~G~i~v~~~--~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d  174 (279)
T d1q7fa_         100 Q-YGQFVRKFGAT-ILQHPRGVTVDNKGRIIVVEC--KVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  174 (279)
T ss_dssp             T-TSCEEEEECTT-TCSCEEEEEECTTSCEEEEET--TTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             c-cccceeecCCC-cccccceeccccCCcEEEEee--ccceeeEecc-CCceeecccccccccccceeeeccceeEEeee
Confidence            5 45566565332 223344566667777666655  4677888875 45555555  3456678899999999888887


Q ss_pred             eCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeC-CCcEEEEecC
Q 019349          198 SEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-SGSLHVFSPG  257 (342)
Q Consensus       198 s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~-dg~i~vwd~~  257 (342)
                      ...+. |++||. +|+.+.++...........|++.++++   ++++-+. ++.|++|+.+
T Consensus       175 ~~~~~-V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~---i~Vad~~~~~~v~~f~~~  230 (279)
T d1q7fa_         175 NRAHC-VKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGE---ILIADNHNNFNLTIFTQD  230 (279)
T ss_dssp             GGGTE-EEEEET-TCCEEEEESCTTTSCSEEEEEECTTCC---EEEEECSSSCEEEEECTT
T ss_pred             ccccc-eeeeec-CCceeeeecccccccCCcccccccCCe---EEEEECCCCcEEEEECCC
Confidence            77766 689996 577777774222233478899999998   7766544 4579999843

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.54  E-value=0.00018  Score=61.04  Aligned_cols=227  Identities=10%  Similarity=-0.016  Sum_probs=129.5

Q ss_pred             CeEEEEEcCCCCEEEEEcCCc-EEEEeCCCCcEEEEEe--eCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349            9 PVFFVSFNQDNSGFALSTKDG-FKIFDSSTGRLCYERA--VGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (342)
Q Consensus         9 ~V~~l~fs~d~~~la~g~~~g-~~v~d~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~   85 (342)
                      .+..++|+++|++.++-...+ +..|+.++.+......  ......+.+..+++.++...++.   ...+.+...+..++
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~---~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDF---KSTGGIFAATENGD  117 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTS---SSCCEEEEECTTSC
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCC---ccceeEEEEcCCCc
Confidence            356889999999666655554 6667777665433221  23344456666665554433221   01334555565555


Q ss_pred             cEEEEEec---CCceEEEEEcCCeEEEEEC---------CeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEe
Q 019349           86 TALRELNF---LTSILAVRLNKKRLVIVLR---------EKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVP  153 (342)
Q Consensus        86 ~~~~~~~~---~~~v~~i~~~~~~~~~~~d---------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  153 (342)
                      ........   .....++.+.+++.+.++|         +.++.++.... .+..+...  ......+++++++..|.++
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~--~~~pnGia~s~dg~~lyva  194 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQN--ISVANGIALSTDEKVLWVT  194 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEE--ESSEEEEEECTTSSEEEEE
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeec--cceeeeeeeccccceEEEe
Confidence            54443332   2246778888876555442         13444443332 22222111  1123346677777666555


Q ss_pred             CCCCccEEEEEEccCC-ceeEEE-------ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC--
Q 019349          154 ASTTKGSVLVYNVMEL-HSHCEI-------DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY--  223 (342)
Q Consensus       154 ~~~~~g~i~iwd~~~~-~~~~~~-------~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~--  223 (342)
                      .. ..+.|..||+... ......       .........|++.++|++.++....+. |.+||- +|+.+.++.....  
T Consensus       195 d~-~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~-V~~~~p-~G~~l~~i~~P~~~~  271 (319)
T d2dg1a1         195 ET-TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGR-VLVFNK-RGYPIGQILIPGRDE  271 (319)
T ss_dssp             EG-GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTE-EEEECT-TSCEEEEEECTTGGG
T ss_pred             cc-cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCE-EEEECC-CCcEEEEEeCCCcCC
Confidence            44 5789999998643 111111       111123567999999998888887887 479995 7988887753221  


Q ss_pred             --ceeEEEEEEecCCCcccEEEEEeC
Q 019349          224 --PSTIFSLSFGQSMQFQDILVATSS  247 (342)
Q Consensus       224 --~~~v~~l~fs~d~~~~~~l~~~s~  247 (342)
                        ...+++++|.|+..   .|.+.+.
T Consensus       272 ~~~~~~~~~~~~~~~~---~~~~t~~  294 (319)
T d2dg1a1         272 GHMLRSTHPQFIPGTN---QLIICSN  294 (319)
T ss_dssp             TCSCBCCEEEECTTSC---EEEEEEE
T ss_pred             CcCceeeeEEEeCCCC---EEEEEcC
Confidence              12377899999876   5655544

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.51  E-value=5.1e-05  Score=63.90  Aligned_cols=195  Identities=9%  Similarity=0.072  Sum_probs=114.4

Q ss_pred             EEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEE-EEE--CCeEEEEECCCC-c
Q 019349           49 FSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLV-IVL--REKTYIYDANTL-A  124 (342)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~-~~~--d~~i~i~d~~~~-~  124 (342)
                      +.-+.+..++++++.-.       .+++|..||.. ++..........+.++++.++..+ ++.  ++.+..++.... .
T Consensus        30 ~e~iAv~pdG~l~vt~~-------~~~~I~~i~p~-g~~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~  101 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNH-------EVGEIVSITPD-GNQQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG  101 (302)
T ss_dssp             EEEEEECTTSCEEEEET-------TTTEEEEECTT-CCEEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS
T ss_pred             cCCEEECCCCCEEEEeC-------CCCEEEEEeCC-CCEEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc
Confidence            34456677776554333       37888888854 454455566778999999887544 433  567777776432 1


Q ss_pred             eeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe----------cccCCeeEEEECCCCCEE
Q 019349          125 ILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID----------AHQAPLAAIVLSSNGMYI  194 (342)
Q Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~----------~h~~~v~~i~~s~dg~~l  194 (342)
                      ....+...........+...+++.++++..  .++.+..+|...+.......          ......+.+.++. +.++
T Consensus       102 ~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~  178 (302)
T d2p4oa1         102 TVETLLTLPDAIFLNGITPLSDTQYLTADS--YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLY  178 (302)
T ss_dssp             CEEEEEECTTCSCEEEEEESSSSEEEEEET--TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEE
T ss_pred             ceeeccccCCccccceeEEccCCCEEeecc--ccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-Ccee
Confidence            222222222333455677778887777655  57888888887765332211          1112345666653 2344


Q ss_pred             EEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          195 ATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       195 at~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      ++.+..+. |..++.....................|+|.+||.   ++++...+++|..++.+.
T Consensus       179 ~~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~---l~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         179 VSNTEKML-LLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGN---LYGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEETTTTE-EEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCC---EEEECBTTCCEEEECTTC
T ss_pred             eecCCCCe-EEeccccccccccccccccCCCCCcceEECCCCC---EEEEEcCCCcEEEECCCC
Confidence            55555555 4566665433221111000112245799999998   888888899999997653

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=0.00024  Score=58.43  Aligned_cols=219  Identities=12%  Similarity=0.169  Sum_probs=143.7

Q ss_pred             cEEEEeCCCCc-EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEE-cCCe
Q 019349           29 GFKIFDSSTGR-LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRL-NKKR  106 (342)
Q Consensus        29 g~~v~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~-~~~~  106 (342)
                      .+.+-|+.... .....-...  ..-|.+..+.+++-++        +++.++|+++.+.+..+.++.+|.=-.| +++.
T Consensus        46 ~VvIidl~n~~~~~Rrpi~Ad--sAIMhP~~~IiALrag--------~~LQiFnletK~klks~~~~e~VvfWkWis~~~  115 (327)
T d1utca2          46 QVVIIDMNDPSNPIRRPISAD--SAIMNPASKVIALKAG--------KTLQIFNIEMKSKMKAHTMTDDVTFWKWISLNT  115 (327)
T ss_dssp             EEEEEETTSTTSCEEEECCCS--EEEECSSSSEEEEEET--------TEEEEEETTTTEEEEEEECSSCCCEEEESSSSE
T ss_pred             eEEEEECCCCCcceecccchh--hhhcCCCCcEEEEecC--------CeEEEEehhHhhhhceEEcCCCcEEEEecCCCE
Confidence            36788887653 333222122  2345677788888775        6899999999999999999998866666 6777


Q ss_pred             EEEEECCeEEEEECCCC-ceeeEEeCCCC--CceEEEEeeCCCccEEEEeCC-----CCccEEEEEEccCCceeEEEecc
Q 019349          107 LVIVLREKTYIYDANTL-AILDTIDTVPN--LKGLCAFSPSLNACFLAVPAS-----TTKGSVLVYNVMELHSHCEIDAH  178 (342)
Q Consensus       107 ~~~~~d~~i~i~d~~~~-~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~-----~~~g~i~iwd~~~~~~~~~~~~h  178 (342)
                      +.++++..|+-|+++.. .+.+-++.+.+  ...+..+..+++..+++..|-     .-.|.+++|..+.. ..+.+++|
T Consensus       116 L~lVT~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~-~sQ~ieGh  194 (327)
T d1utca2         116 VALVTDNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGH  194 (327)
T ss_dssp             EEEECSSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTT-EEEEECCS
T ss_pred             EEEEcCCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccC-cCccccce
Confidence            88888999999999543 45555554433  356777888888888776541     13588999998764 45678888


Q ss_pred             cCCeeEEEECCCC---CEEEEEeC--CCcEEEEEEcCCCe--------eEEEec--cCcCceeEEEEEEecCCCcccEEE
Q 019349          179 QAPLAAIVLSSNG---MYIATASE--QGTIIRVFLVSEAT--------KSYSFR--RGTYPSTIFSLSFGQSMQFQDILV  243 (342)
Q Consensus       179 ~~~v~~i~~s~dg---~~lat~s~--dg~~irlwd~~~~~--------~~~~~~--~~~~~~~v~~l~fs~d~~~~~~l~  243 (342)
                      ......+.+..+.   +.++-+..  .+.-+++-++....        +...+.  ......-..+|..|+.-.   .+.
T Consensus       195 aa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kyg---iiy  271 (327)
T d1utca2         195 AASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHD---VVF  271 (327)
T ss_dssp             EEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTT---EEE
T ss_pred             eeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCC---EEE
Confidence            7766665554322   23444332  22224677764321        111111  111112245688888777   899


Q ss_pred             EEeCCCcEEEEecCCCCC
Q 019349          244 ATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       244 ~~s~dg~i~vwd~~~~~~  261 (342)
                      .-+.-|.|++||++++..
T Consensus       272 viTK~G~i~lyDleTgt~  289 (327)
T d1utca2         272 LITKYGYIHLYDLETGTC  289 (327)
T ss_dssp             EEETTSEEEEEETTTCCE
T ss_pred             EEecCcEEEEEEcccccE
Confidence            999999999999998865

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.24  E-value=0.0002  Score=58.63  Aligned_cols=190  Identities=7%  Similarity=0.020  Sum_probs=104.2

Q ss_pred             EEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEE-EEecCCceEEEEEcCCeEEEEE--C-CeEEEEECCCCceee
Q 019349           52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR-ELNFLTSILAVRLNKKRLVIVL--R-EKTYIYDANTLAILD  127 (342)
Q Consensus        52 ~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~-~~~~~~~v~~i~~~~~~~~~~~--d-~~i~i~d~~~~~~~~  127 (342)
                      +++..+++..++...      ..+.+..++..+..... ..........++++++..+.++  . +.+++++-.+...+.
T Consensus        19 vavd~dG~i~v~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          19 VAVDSAGNVYVTSEG------MYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             EEECTTCCEEEEECS------SSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCEEC
T ss_pred             EEEcCCCCEEEEEcC------CCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccceeee
Confidence            445555554433332      34566666554332221 1111234567788776544444  2 355555544443332


Q ss_pred             EEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEE
Q 019349          128 TIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVF  207 (342)
Q Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlw  207 (342)
                      ...   ......+++.++++.++++-.  .+..+..++............-......|+++++|+.+++...++.+ ..+
T Consensus        93 ~~~---~~~~p~~iavd~~g~i~v~d~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i-~~~  166 (260)
T d1rwia_          93 PFD---GLNYPEGLAVDTQGAVYVADR--GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRV-VKL  166 (260)
T ss_dssp             CCC---SCCSEEEEEECTTCCEEEEEG--GGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEE-EEE
T ss_pred             eee---eeeecccccccccceeEeecc--ccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccc-ccc
Confidence            221   122345566666666665543  35667777765443222111223456789999999988887777764 688


Q ss_pred             EcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCC
Q 019349          208 LVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGF  258 (342)
Q Consensus       208 d~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~  258 (342)
                      |...... ..+... .......|++.+++.   ++++....+.|..++...
T Consensus       167 d~~~~~~-~~~~~~-~~~~p~gi~~d~~g~---l~vsd~~~~~i~~~~~~~  212 (260)
T d1rwia_         167 EAESNNQ-VVLPFT-DITAPWGIAVDEAGT---VYVTEHNTNQVVKLLAGS  212 (260)
T ss_dssp             CTTTCCE-EECCCS-SCCSEEEEEECTTCC---EEEEETTTTEEEEECTTC
T ss_pred             cccccee-eeeecc-ccCCCccceeeeeee---eeeeecCCCEEEEEeCCC
Confidence            8765433 233211 223368899999998   787777888888887543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.15  E-value=0.0014  Score=54.58  Aligned_cols=215  Identities=10%  Similarity=0.029  Sum_probs=128.6

Q ss_pred             EEEEcCCCCEEE-EEcC-CcEEEEeCCCCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEE
Q 019349           12 FVSFNQDNSGFA-LSTK-DGFKIFDSSTGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALR   89 (342)
Q Consensus        12 ~l~fs~d~~~la-~g~~-~g~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~   89 (342)
                      +..|++....|. +--. ..+..||..+++.........+..+.+..+++ ++++.        .+.|.++|..+++...
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~~i~~~~dg~-l~va~--------~~gl~~~d~~tg~~~~   92 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGSALAKISDSK-QLIAS--------DDGLFLRDTATGVLTL   92 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEEEEEEEETTE-EEEEE--------TTEEEEEETTTCCEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCC-EEEEE--------eCccEEeecccceeeE
Confidence            456787555554 4323 34677888888665433334555555554443 33333        3478999999887654


Q ss_pred             EEecC-----CceEEEEEcCCeEEEEE-------CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCC
Q 019349           90 ELNFL-----TSILAVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTT  157 (342)
Q Consensus        90 ~~~~~-----~~v~~i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  157 (342)
                      -....     ..+.++.+.+++.+.++       .+.-.+|.+.+++.........   ....++.++++..+..+.. .
T Consensus        93 l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~---~~Ng~~~s~d~~~l~~~dt-~  168 (295)
T d2ghsa1          93 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADIS---IPNSICFSPDGTTGYFVDT-K  168 (295)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEES---SEEEEEECTTSCEEEEEET-T
T ss_pred             EeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccC---CcceeeecCCCceEEEeec-c
Confidence            33321     15678888887654443       1345667766665443332211   1234555666666655554 5


Q ss_pred             ccEEEEEEccCC------cee--EEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEE
Q 019349          158 KGSVLVYNVMEL------HSH--CEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFS  229 (342)
Q Consensus       158 ~g~i~iwd~~~~------~~~--~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~  229 (342)
                      .+.|..+++...      +..  ..+.+-......+++..+|++.++.-..|.+ ..||. +|+.+.++....  ..+++
T Consensus       169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V-~~~dp-~G~~~~~i~lP~--~~~T~  244 (295)
T d2ghsa1         169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAV-DRYDT-DGNHIARYEVPG--KQTTC  244 (295)
T ss_dssp             TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEE-EEECT-TCCEEEEEECSC--SBEEE
T ss_pred             cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCce-EEecC-CCcEeeEecCCC--CceEE
Confidence            788999987422      111  1222334557889999999977776666665 58994 788888875432  34899


Q ss_pred             EEEe-cCCCcccEEEEEe
Q 019349          230 LSFG-QSMQFQDILVATS  246 (342)
Q Consensus       230 l~fs-~d~~~~~~l~~~s  246 (342)
                      ++|- ||.+   .|..++
T Consensus       245 ~~FGG~d~~---~LyvTt  259 (295)
T d2ghsa1         245 PAFIGPDAS---RLLVTS  259 (295)
T ss_dssp             EEEESTTSC---EEEEEE
T ss_pred             EEEeCCCCC---EEEEEE
Confidence            9996 6655   454443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.04  E-value=0.0025  Score=53.54  Aligned_cols=240  Identities=10%  Similarity=0.059  Sum_probs=124.5

Q ss_pred             EEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEec-----CCceEEEEEcCCe--EEEEE-CCeEEEEECCCC
Q 019349           52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNF-----LTSILAVRLNKKR--LVIVL-REKTYIYDANTL  123 (342)
Q Consensus        52 ~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~-----~~~v~~i~~~~~~--~~~~~-d~~i~i~d~~~~  123 (342)
                      ..+..+++..++...+......+++|..||..+++.......     ......+.+.++.  ++++. .+.+..++....
T Consensus        23 pa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~  102 (314)
T d1pjxa_          23 PVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGT  102 (314)
T ss_dssp             EEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSC
T ss_pred             eEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCc
Confidence            445556665544332111111256799999888765433221     1235678898763  44544 457888887654


Q ss_pred             ceeeEEeCCCCC---ceEEEEeeCCCccEEEEeCC-------------CCccEEEEEEccCCceeEEEecccCCeeEEEE
Q 019349          124 AILDTIDTVPNL---KGLCAFSPSLNACFLAVPAS-------------TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVL  187 (342)
Q Consensus       124 ~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~-------------~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~  187 (342)
                      ... .+......   .....+..++++.+.++...             ...|.|..++.. ++... +..+-..-+.|+|
T Consensus       103 ~~~-~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~-~~~~~~~pNGi~~  179 (314)
T d1pjxa_         103 FEE-IAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQ-VDTAFQFPNGIAV  179 (314)
T ss_dssp             EEE-CCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEE-EEEEESSEEEEEE
T ss_pred             EEE-EEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeE-eeCCcceeeeeEE
Confidence            322 11111111   11223445566666655311             013455555432 33222 2223334578999


Q ss_pred             CCCCC----EE-EEEeCCCcEEEEEEcCCCeeEE------EeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEec
Q 019349          188 SSNGM----YI-ATASEQGTIIRVFLVSEATKSY------SFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSP  256 (342)
Q Consensus       188 s~dg~----~l-at~s~dg~~irlwd~~~~~~~~------~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~  256 (342)
                      +|++.    .| ++-+..++ |..||+.....+.      .+. .........|++.++|+   ++++....+.|++||.
T Consensus       180 ~~d~d~~~~~lyv~d~~~~~-i~~~d~~~~g~~~~~~~~~~~~-~~~~~~pdGiavD~~Gn---lyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         180 RHMNDGRPYQLIVAETPTKK-LWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDEDNN---LLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EECTTSCEEEEEEEETTTTE-EEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBTTCC---EEEEEETTTEEEEECT
T ss_pred             CCCCCcceeEEEEEeecccc-eEEeeccCccccceeeEEEEcc-ccccccceeeEEecCCc---EEEEEcCCCEEEEEeC
Confidence            98875    44 44455555 4567765332221      221 11222356899999998   7777778899999997


Q ss_pred             CCCCCCCCCCCccccccccccccccccccccccceeeeccCCCccccEEEEEE-eCCcEEEEEEe
Q 019349          257 GFAINQRRGGRTSSILGSILPESVNEVLDPADHHVLRNAFPAGVKRASVSVIT-YNGYFVEYIFS  320 (342)
Q Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~dg~v~~~~~~  320 (342)
                      +.......       +  ..|         ..   ....++|+++++.|++.. .+|.|+.+++.
T Consensus       255 ~~g~~~~~-------i--~~p---------~~---~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         255 DGGQPKMR-------I--RCP---------FE---KPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TCBSCSEE-------E--ECS---------SS---CEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCEEEEE-------E--ECC---------CC---CEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            65442110       0  001         00   012344566656665554 57888877663

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=0.00068  Score=60.51  Aligned_cols=224  Identities=10%  Similarity=-0.027  Sum_probs=128.8

Q ss_pred             EEEcCCCCEEEEEcCCcEEEEeCCCCcEE--EEEee---CCEEEEEEcCCCCeEEEEcCCCCC--CCCCCeEEEEECCCC
Q 019349           13 VSFNQDNSGFALSTKDGFKIFDSSTGRLC--YERAV---GAFSIVEMLYSSSLLAIVGAGEQP--SLSPRRLCLFNTTTG   85 (342)
Q Consensus        13 l~fs~d~~~la~g~~~g~~v~d~~~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~--~~~d~~i~iwd~~~~   85 (342)
                      ..|.+++.++....+..+.+||+.+++..  .....   ..+....+.++.+.+++.......  .+..+.+.++|+.++
T Consensus        22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            46888888776555556899999877432  22111   233345677788887776542111  123567899999888


Q ss_pred             cEEEEEec---CCceEEEEEcCCe--EEEEECCeEEEEECCCCceeeEEeCCCCCc----------------eEEEEeeC
Q 019349           86 TALRELNF---LTSILAVRLNKKR--LVIVLREKTYIYDANTLAILDTIDTVPNLK----------------GLCAFSPS  144 (342)
Q Consensus        86 ~~~~~~~~---~~~v~~i~~~~~~--~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~----------------~~~~~~~~  144 (342)
                      +...-...   ...+....|+|++  ++.+.++.+++.+..++..++.........                .-.++-++
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WS  181 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWS  181 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEEC
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEecceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEEC
Confidence            75432111   2244556777775  445559999999987766554443221110                11366688


Q ss_pred             CCccEEEEeCCC--------------------------------CccEEEEEEccCCceeEEE-e-----cccCCeeEEE
Q 019349          145 LNACFLAVPAST--------------------------------TKGSVLVYNVMELHSHCEI-D-----AHQAPLAAIV  186 (342)
Q Consensus       145 ~~~~~l~~~~~~--------------------------------~~g~i~iwd~~~~~~~~~~-~-----~h~~~v~~i~  186 (342)
                      ||+..||+...+                                ....+.++|+.++...... .     ....-+..+.
T Consensus       182 PDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~  261 (465)
T d1xfda1         182 PDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVK  261 (465)
T ss_dssp             TTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEE
T ss_pred             CCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeE
Confidence            999999875311                                1124566666554322111 1     1122367789


Q ss_pred             ECCCCCEEEEEeC-CC--cEEEEEEcCCCeeEEEeccCcCce----eEEEEEEecCCC
Q 019349          187 LSSNGMYIATASE-QG--TIIRVFLVSEATKSYSFRRGTYPS----TIFSLSFGQSMQ  237 (342)
Q Consensus       187 ~s~dg~~lat~s~-dg--~~irlwd~~~~~~~~~~~~~~~~~----~v~~l~fs~d~~  237 (342)
                      |+|+++.++.... +.  ..+.++|..+|+....+... ..+    .-....|+||++
T Consensus       262 W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~-~~~wv~~~~~~p~~~~dg~  318 (465)
T d1xfda1         262 WATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDE-SEAWLHRQNEEPVFSKDGR  318 (465)
T ss_dssp             ESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEE-CSSCCCCCCCCCEECTTSC
T ss_pred             EcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEc-CCceEeccCCceeEccCCC
Confidence            9999987666543 21  13568899998765433211 111    112357899987

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=0.00011  Score=65.82  Aligned_cols=181  Identities=10%  Similarity=0.027  Sum_probs=106.2

Q ss_pred             CCCeEEEEECCCCcEEEEEecC----CceEEEEEcCCe--EEEEEC----------CeEEEEECCCCceeeEEeCCC-CC
Q 019349           73 SPRRLCLFNTTTGTALRELNFL----TSILAVRLNKKR--LVIVLR----------EKTYIYDANTLAILDTIDTVP-NL  135 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~----~~v~~i~~~~~~--~~~~~d----------~~i~i~d~~~~~~~~~~~~~~-~~  135 (342)
                      .++.|.+||+.+++...-+...    -.+....++++.  +++..+          +.+.+||+.+++.. .+.... ..
T Consensus        35 ~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~-~l~~~~~~~  113 (465)
T d1xfda1          35 QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQ-SLDPPEVSN  113 (465)
T ss_dssp             SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCE-ECCCTTCCS
T ss_pred             CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCcee-eccCccCCc
Confidence            3678999999888764444321    256677788874  344433          47889999887543 232221 22


Q ss_pred             ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEe-cccCC-----------------eeEEEECCCCCEEEEE
Q 019349          136 KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEID-AHQAP-----------------LAAIVLSSNGMYIATA  197 (342)
Q Consensus       136 ~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~-~h~~~-----------------v~~i~~s~dg~~lat~  197 (342)
                      ..+....++|++..+|+..   ++.|.+.+...++.++... +-...                 -..+-|||||++||..
T Consensus       114 ~~l~~~~wSPDG~~iafv~---~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~  190 (465)
T d1xfda1         114 AKLQYAGWGPKGQQLIFIF---ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYA  190 (465)
T ss_dssp             CCCSBCCBCSSTTCEEEEE---TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEE
T ss_pred             cccceeeeccCCceEEEEe---cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEE
Confidence            2233356788888999875   5778888887665543332 11111                 1467899999999998


Q ss_pred             eCCCcE---------------------------------EEEEEcCCCeeEEEeccCc----CceeEEEEEEecCCCccc
Q 019349          198 SEQGTI---------------------------------IRVFLVSEATKSYSFRRGT----YPSTIFSLSFGQSMQFQD  240 (342)
Q Consensus       198 s~dg~~---------------------------------irlwd~~~~~~~~~~~~~~----~~~~v~~l~fs~d~~~~~  240 (342)
                      ..|.+-                                 +.++|+.++..........    ...-+..+.|+|+++   
T Consensus       191 ~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~---  267 (465)
T d1xfda1         191 AINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTK---  267 (465)
T ss_dssp             EEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSE---
T ss_pred             EecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCe---
Confidence            644221                                 2344544433211111100    111267789999987   


Q ss_pred             EEEEEeC-C---CcEEEEecCCCC
Q 019349          241 ILVATSS-S---GSLHVFSPGFAI  260 (342)
Q Consensus       241 ~l~~~s~-d---g~i~vwd~~~~~  260 (342)
                      +++.... +   ..|.++|..+++
T Consensus       268 ~~~~~~nR~q~~~~i~~~d~~tg~  291 (465)
T d1xfda1         268 VAVTWLNRAQNVSILTLCDATTGV  291 (465)
T ss_dssp             EEEEEEETTSCEEEEEEEETTTCC
T ss_pred             EEEEEEccccccceEEEEcCCCCc
Confidence            5555433 2   257888887665

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.83  E-value=0.0056  Score=50.73  Aligned_cols=191  Identities=9%  Similarity=-0.020  Sum_probs=118.3

Q ss_pred             CCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEEecCCceEEEEEcCC-eEEEEECCeEEEEECCCCceeeEEeCCCC
Q 019349           56 YSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRELNFLTSILAVRLNKK-RLVIVLREKTYIYDANTLAILDTIDTVPN  134 (342)
Q Consensus        56 ~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~-~~~~~~d~~i~i~d~~~~~~~~~~~~~~~  134 (342)
                      ...+.+..+..      ..++|.-||.++++. ..+..+..+.++.+.++ .++++..+.+.++|..+++...-......
T Consensus        27 ~~~~~l~wvDi------~~~~I~r~d~~~g~~-~~~~~~~~~~~i~~~~dg~l~va~~~gl~~~d~~tg~~~~l~~~~~~   99 (295)
T d2ghsa1          27 PASGTAWWFNI------LERELHELHLASGRK-TVHALPFMGSALAKISDSKQLIASDDGLFLRDTATGVLTLHAELESD   99 (295)
T ss_dssp             TTTTEEEEEEG------GGTEEEEEETTTTEE-EEEECSSCEEEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSTT
T ss_pred             CCCCEEEEEEC------CCCEEEEEECCCCeE-EEEECCCCcEEEEEecCCCEEEEEeCccEEeecccceeeEEeeeecC
Confidence            33444555543      357899999888754 45677778888888655 56667788899999998865433322222


Q ss_pred             --CceEEEEeeCCCccEEEEeCC--CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcC
Q 019349          135 --LKGLCAFSPSLNACFLAVPAS--TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVS  210 (342)
Q Consensus       135 --~~~~~~~~~~~~~~~l~~~~~--~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~  210 (342)
                        ......+..++++.+.+....  ...+.-.+|.+..++....+.. -..-+.++|+++++.|..+......|..+++.
T Consensus       100 ~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d  178 (295)
T d2ghsa1         100 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLD  178 (295)
T ss_dssp             CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBC
T ss_pred             CCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeEeeec
Confidence              123455666777776665321  0123455666666655444433 33468899999999776665544445667763


Q ss_pred             C--C----eeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          211 E--A----TKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       211 ~--~----~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      .  +    +................+++..+|.   +.++.-..+.|..||-+
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~Gn---lWva~~~~g~V~~~dp~  228 (295)
T d2ghsa1         179 ARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGH---IWNARWGEGAVDRYDTD  228 (295)
T ss_dssp             TTTCCBSSCCEEEEECTTSSSEEEEEEECTTSC---EEEEEETTTEEEEECTT
T ss_pred             ccccccccceEEEeccCcccccccceEEcCCCC---EEeeeeCCCceEEecCC
Confidence            2  1    1111111111234478899999998   77776678889999954

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.56  E-value=0.026  Score=51.18  Aligned_cols=140  Identities=9%  Similarity=-0.016  Sum_probs=84.3

Q ss_pred             CeEEEEECCCCceeeEEeCCCCC---------ceEEEEeeCCCcc-EEEEeCCCCccEEEEEEccCCceeEEEecc----
Q 019349          113 EKTYIYDANTLAILDTIDTVPNL---------KGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSHCEIDAH----  178 (342)
Q Consensus       113 ~~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h----  178 (342)
                      +.+.-.|.++++.+..++...+.         .....+...+... .++..+  .+|.+.++|..+++.+...+..    
T Consensus       272 ~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~--k~G~l~vlDr~tG~~i~~~~~~~~~~  349 (571)
T d2ad6a1         272 MTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHID--RNGILYTLNRENGNLIVAEKVDPAVN  349 (571)
T ss_dssp             TEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             cceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeecc--ccceEEEEecCCCcEeeeeccCCccc
Confidence            35777899999988887754432         1222333333222 344444  5899999999998876432110    


Q ss_pred             ---------------------------------cCCe--eEEEECCCCCEEEEEeCC-----------------------
Q 019349          179 ---------------------------------QAPL--AAIVLSSNGMYIATASEQ-----------------------  200 (342)
Q Consensus       179 ---------------------------------~~~v--~~i~~s~dg~~lat~s~d-----------------------  200 (342)
                                                       .+..  ...+++|+..++.....+                       
T Consensus       350 ~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (571)
T d2ad6a1         350 VFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATL  429 (571)
T ss_dssp             SEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccce
Confidence                                             0000  125778887777665433                       


Q ss_pred             --------------CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          201 --------------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       201 --------------g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                                    |. +.-+|+.+|+.+.+......   ..+=.++-.+.   ++.+++.||.++-+|.+++++
T Consensus       430 ~~~~~~~~~~~~~~G~-l~AiD~~TG~~~W~~~~~~~---~~~g~l~Tagg---lVf~G~~dg~l~A~Da~tGe~  497 (571)
T d2ad6a1         430 AMYPGPNGPTKKEMGQ-IRAFDLTTGKAKWTKWEKFA---AWGGTLYTKGG---LVWYATLDGYLKALDNKDGKE  497 (571)
T ss_dssp             EEEECTTSTTSCCCEE-EEEECTTTCCEEEEEEESSC---CCSBCEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             eeccccCCcccCCccc-EEEeccCCCceeeEcCCCCC---CCcceeEecCC---EEEEECCCCeEEEEECCCCcE
Confidence                          23 45778888887776643211   11111222344   788899999999999998875

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.43  E-value=0.018  Score=46.20  Aligned_cols=231  Identities=13%  Similarity=0.065  Sum_probs=113.2

Q ss_pred             EEcCC--CCEEEEEcCCcEEEEeCCCCcEE-EEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEE
Q 019349           14 SFNQD--NSGFALSTKDGFKIFDSSTGRLC-YERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALRE   90 (342)
Q Consensus        14 ~fs~d--~~~la~g~~~g~~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~   90 (342)
                      ..|||  |+.+|-.+++-+-++|+..++.. .....+......+.++++.++++..... ......|.+++..+++...-
T Consensus         5 ~~sPdi~G~~v~f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~-~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           5 LLNPDIHGDRIIFVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGS-SLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CEEEEEETTEEEEEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEEST-TCCEEEEEEEETTTTEEEEC
T ss_pred             ccCCCCCCCEEEEEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCC-CCCceEEEEEEecCCceEEe
Confidence            45799  99988666666777799888654 2223344556678889999988753100 00123577888877765432


Q ss_pred             EecC-------CceEEEEEcCCeEEEEE---------CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeC
Q 019349           91 LNFL-------TSILAVRLNKKRLVIVL---------REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPA  154 (342)
Q Consensus        91 ~~~~-------~~v~~i~~~~~~~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  154 (342)
                      ....       .......++++...++.         ...+...+...+.....   ...... .. ...+.+..++...
T Consensus        84 t~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-~~-~~~~~~~~~~~~~  158 (281)
T d1k32a2          84 TYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPL---NLGPAT-HI-LFADGRRVIGRNT  158 (281)
T ss_dssp             CCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEEC---CSCSCS-EE-EEETTEEEEEESC
T ss_pred             eecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEe---cCCccc-ee-eecCCCeEEEeec
Confidence            1111       13355667776543332         11344455444432211   111111 11 1122233333322


Q ss_pred             CCC---------ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe-CCC-cEEEEEEcCCCeeEEEeccCcC
Q 019349          155 STT---------KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS-EQG-TIIRVFLVSEATKSYSFRRGTY  223 (342)
Q Consensus       155 ~~~---------~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s-~dg-~~irlwd~~~~~~~~~~~~~~~  223 (342)
                      ...         ............... ....+........++++.  ++..+ .++ .-|.++|+.+++. ..+..+. 
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~d~~g~~~-~~lt~~~-  233 (281)
T d1k32a2         159 FELPHWKGYRGGTRGKIWIEVNSGAFK-KIVDMSTHVSSPVIVGHR--IYFITDIDGFGQIYSTDLDGKDL-RKHTSFT-  233 (281)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETTEEE-EEECCSSCCEEEEEETTE--EEEEECTTSSCEEEEEETTSCSC-EECCCCC-
T ss_pred             cccceeeeeccCCcceeeeecccccee-eccCCccccceeeeeccc--cceecccccccceEEEeCCCCce-EEeecCC-
Confidence            100         011122222222222 222233344455555553  33333 222 2245677765543 3332221 


Q ss_pred             ceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          224 PSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       224 ~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      .  .....|||||+   .|+. +.++.|+++|+++++.
T Consensus       234 ~--~~~~~~SpDG~---~I~f-~~~~~l~~~d~~~g~~  265 (281)
T d1k32a2         234 D--YYPRHLNTDGR---RILF-SKGGSIYIFNPDTEKI  265 (281)
T ss_dssp             S--SCEEEEEESSS---CEEE-EETTEEEEECTTTCCE
T ss_pred             C--cccccCcCCCC---EEEE-EeCCEEEEEECCCCCE
Confidence            1  22246899998   6665 4468899999987764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.37  E-value=0.029  Score=46.74  Aligned_cols=194  Identities=13%  Similarity=0.087  Sum_probs=109.9

Q ss_pred             EEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEE-ecCCceEEEEEcCCe-EEEEEC------CeEEEEECCCC
Q 019349           52 VEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL-NFLTSILAVRLNKKR-LVIVLR------EKTYIYDANTL  123 (342)
Q Consensus        52 ~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~-~~~~~v~~i~~~~~~-~~~~~d------~~i~i~d~~~~  123 (342)
                      +.+..+++ +.++..      ..++|..||..+++....+ ........++++++. ++++..      +.+...+....
T Consensus        45 ~~~D~~G~-Ly~~D~------~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~  117 (319)
T d2dg1a1          45 LNFDRQGQ-LFLLDV------FEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD  117 (319)
T ss_dssp             EEECTTSC-EEEEET------TTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC
T ss_pred             CEECCCCC-EEEEEC------CCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc
Confidence            44555555 444443      3678888988776654443 344567889998875 444441      23444555544


Q ss_pred             ceeeEEeCCCCCceEEEEeeCCCccEEEEeCC----CCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEE-e
Q 019349          124 AILDTIDTVPNLKGLCAFSPSLNACFLAVPAS----TTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATA-S  198 (342)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~-s  198 (342)
                      .................+..++++.+.++...    ...+.+..++.... .+..+...-...+.|+|+||++.|..+ +
T Consensus       118 ~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~-~~~~~~~~~~~pnGia~s~dg~~lyvad~  196 (319)
T d2dg1a1         118 NLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFR-TVTPIIQNISVANGIALSTDEKVLWVTET  196 (319)
T ss_dssp             SCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSC-CEEEEEEEESSEEEEEECTTSSEEEEEEG
T ss_pred             eeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccc-eeEEEeeccceeeeeeeccccceEEEecc
Confidence            44333332222233445566677776654321    01244555554432 333333333446889999999876555 4


Q ss_pred             CCCcEEEEEEcCC-CeeEEEec-----cCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecC
Q 019349          199 EQGTIIRVFLVSE-ATKSYSFR-----RGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPG  257 (342)
Q Consensus       199 ~dg~~irlwd~~~-~~~~~~~~-----~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~  257 (342)
                      ..++ |..||+.. +.......     ..........|++.++|+   +.++....+.|.+||-+
T Consensus       197 ~~~~-I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~---l~Va~~~~g~V~~~~p~  257 (319)
T d2dg1a1         197 TANR-LHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN---LYVAMYGQGRVLVFNKR  257 (319)
T ss_dssp             GGTE-EEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC---EEEEEETTTEEEEECTT
T ss_pred             cCCc-eEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCC---EEEEEcCCCEEEEECCC
Confidence            4555 57888753 22211110     001112256799999998   88888889999999953

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.28  E-value=0.033  Score=45.51  Aligned_cols=221  Identities=12%  Similarity=0.187  Sum_probs=120.9

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEE
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLA  151 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  151 (342)
                      .+.|.|.|+.++..+.......  -+.-.+|...+++.  ..++.+||+++.+.++.+.....   +.-..+-.+ ..|+
T Consensus        44 ~~~VvIidl~n~~~~~Rrpi~A--dsAIMhP~~~IiALrag~~LQiFnletK~klks~~~~e~---VvfWkWis~-~~L~  117 (327)
T d1utca2          44 QAQVVIIDMNDPSNPIRRPISA--DSAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMTDD---VTFWKWISL-NTVA  117 (327)
T ss_dssp             EEEEEEEETTSTTSCEEEECCC--SEEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECSSC---CCEEEESSS-SEEE
T ss_pred             CceEEEEECCCCCcceecccch--hhhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcCCC---cEEEEecCC-CEEE
Confidence            4688899987765443332222  22334555544444  67999999999999988876554   333444322 2555


Q ss_pred             EeCCCCccEEEEEEccC-CceeEEEeccc----CCeeEEEECCCCCEEEEEe---CC----CcEEEEEEcCCCeeEEEec
Q 019349          152 VPASTTKGSVLVYNVME-LHSHCEIDAHQ----APLAAIVLSSNGMYIATAS---EQ----GTIIRVFLVSEATKSYSFR  219 (342)
Q Consensus       152 ~~~~~~~g~i~iwd~~~-~~~~~~~~~h~----~~v~~i~~s~dg~~lat~s---~d----g~~irlwd~~~~~~~~~~~  219 (342)
                      ...   +..|.-|++.. .++.+.+..|.    ..|..-..+++.++++-.+   .+    |. ++||.++.+.- ..+.
T Consensus       118 lVT---~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~-mQLYS~er~~s-Q~ie  192 (327)
T d1utca2         118 LVT---DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGA-MQLYSVDRKVS-QPIE  192 (327)
T ss_dssp             EEC---SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEE-EEEEETTTTEE-EEEC
T ss_pred             EEc---CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEE-EEEEEeccCcC-cccc
Confidence            553   46799999943 34677777665    3576777889999876543   33    43 57888875532 2222


Q ss_pred             cCcCceeEEEEEEe--cCCCcccEEEEE---eCCCcEEEEecCCCCCCCCCCCcccccccccccccccc-ccccc--cce
Q 019349          220 RGTYPSTIFSLSFG--QSMQFQDILVAT---SSSGSLHVFSPGFAINQRRGGRTSSILGSILPESVNEV-LDPAD--HHV  291 (342)
Q Consensus       220 ~~~~~~~v~~l~fs--~d~~~~~~l~~~---s~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~  291 (342)
                      .+  .+.-..+.+.  ++..  .+++-+   ...+.+||-++..+......         + +.....+ +.|+.  ...
T Consensus       193 Gh--aa~F~~~~~~g~~~~~--~lf~fa~r~~~~~kLhIiEig~~~~g~~~---------f-~kk~vdi~fppea~~DFP  258 (327)
T d1utca2         193 GH--AASFAQFKMEGNAEES--TLFCFAVRGQAGGKLHIIEVGTPPTGNQP---------F-PKKAVDVFFPPEAQNDFP  258 (327)
T ss_dssp             CS--EEEEEEECCTTCSSCE--EEEEEEEEETTEEEEEEEECSCCCTTCCC---------C-CCEEEECCCCTTCTTCCE
T ss_pred             ce--eeeeEEEEcCCCCCCc--eEEEEEECCCCCcEEEEEEcCCCccCCCC---------C-cceeEEEECCccccCCcE
Confidence            11  1111111111  1111  022222   22368999999875431110         0 0111112 22211  111


Q ss_pred             eeeccCCCccccEEEEEEeCCcEEEEEEec
Q 019349          292 LRNAFPAGVKRASVSVITYNGYFVEYIFSI  321 (342)
Q Consensus       292 ~~~~~~~~~~~~~l~~~~~dg~v~~~~~~~  321 (342)
                      .  ++....+-+.++..+.-|.+++|++.+
T Consensus       259 v--amqvs~kygiiyviTK~G~i~lyDleT  286 (327)
T d1utca2         259 V--AMQISEKHDVVFLITKYGYIHLYDLET  286 (327)
T ss_dssp             E--EEEEETTTTEEEEEETTSEEEEEETTT
T ss_pred             E--EEEeeccCCEEEEEecCcEEEEEEccc
Confidence            1  112234557899999999999997644

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.19  E-value=0.0013  Score=53.52  Aligned_cols=93  Identities=6%  Similarity=-0.022  Sum_probs=62.0

Q ss_pred             ccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeC-CCc----EEEEEEcCCCeeEEEeccC
Q 019349          147 ACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASE-QGT----IIRVFLVSEATKSYSFRRG  221 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~-dg~----~irlwd~~~~~~~~~~~~~  221 (342)
                      +..+|+..   +|.|.+.|+..++.. .+..+...+...+|||||++||-.+. ++.    -|.+.+..+++... +...
T Consensus        12 G~~v~f~~---~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~-lt~~   86 (281)
T d1k32a2          12 GDRIIFVC---CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR-ITYF   86 (281)
T ss_dssp             TTEEEEEE---TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE-CCCC
T ss_pred             CCEEEEEe---CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE-eeec
Confidence            55777765   467999999987754 56667777889999999999996643 221    24577777776533 2111


Q ss_pred             c-----CceeEEEEEEecCCCcccEEEEEeC
Q 019349          222 T-----YPSTIFSLSFGQSMQFQDILVATSS  247 (342)
Q Consensus       222 ~-----~~~~v~~l~fs~d~~~~~~l~~~s~  247 (342)
                      .     ........+|+||++   .|+....
T Consensus        87 ~~~~~~~~~~~~~~~~spdg~---~l~~~~~  114 (281)
T d1k32a2          87 SGKSTGRRMFTDVAGFDPDGN---LIISTDA  114 (281)
T ss_dssp             CEEEETTEECSEEEEECTTCC---EEEEECT
T ss_pred             CCCccCccccccccccCCCCC---EEEEEEc
Confidence            0     011246788999998   7776543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.09  E-value=0.095  Score=47.35  Aligned_cols=145  Identities=8%  Similarity=0.003  Sum_probs=85.1

Q ss_pred             CCCeEEEEECCCCcEEEEEecCC-----ceE-EEEEcCCeEEEEE-------CCeEEEEECCCCceeeEEeCCCCCc---
Q 019349           73 SPRRLCLFNTTTGTALRELNFLT-----SIL-AVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNLK---  136 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~-----~v~-~i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~~---  136 (342)
                      .++.+.-.|.++|+.+.......     .+. .-.+..+.+++..       .+.|+-+|+.+++.+..+.+.....   
T Consensus       123 ~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~  202 (571)
T d2ad6a1         123 ANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVR  202 (571)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred             CCCcEEeeehhhhhhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCccccc
Confidence            37889999999999988765421     111 1123445555544       4689999999999998775432110   


Q ss_pred             --------------------------------eE-EEEeeCCCccEEEEeCCC--------------CccEEEEEEccCC
Q 019349          137 --------------------------------GL-CAFSPSLNACFLAVPAST--------------TKGSVLVYNVMEL  169 (342)
Q Consensus       137 --------------------------------~~-~~~~~~~~~~~l~~~~~~--------------~~g~i~iwd~~~~  169 (342)
                                                      .+ ...+.+++...+......              ....+.-.|.+++
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG  282 (571)
T d2ad6a1         203 LAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTG  282 (571)
T ss_dssp             BCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTC
T ss_pred             ccccccccccccCcccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccch
Confidence                                            00 011222322233222110              1356788899999


Q ss_pred             ceeEEEecccC---------CeeEEEECCCCC---EEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349          170 HSHCEIDAHQA---------PLAAIVLSSNGM---YIATASEQGTIIRVFLVSEATKSYSF  218 (342)
Q Consensus       170 ~~~~~~~~h~~---------~v~~i~~s~dg~---~lat~s~dg~~irlwd~~~~~~~~~~  218 (342)
                      +.+-.++.+..         +.....+..+|+   .++.++.+|.+ .++|..+|+.+...
T Consensus       283 ~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l-~vlDr~tG~~i~~~  342 (571)
T d2ad6a1         283 MAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGIL-YTLNRENGNLIVAE  342 (571)
T ss_dssp             CEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEE-EEEETTTCCEEEEE
T ss_pred             hheecccccCccccccccccccceeeeeccCccccceeeccccceE-EEEecCCCcEeeee
Confidence            98766653221         112222333454   46778888875 69999999987543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=96.85  E-value=0.16  Score=45.90  Aligned_cols=140  Identities=8%  Similarity=0.045  Sum_probs=83.9

Q ss_pred             eEEEEECCCCceeeEEeCCCC---------CceEEEEeeCCCcc-EEEEeCCCCccEEEEEEccCCceeEEEecccC---
Q 019349          114 KTYIYDANTLAILDTIDTVPN---------LKGLCAFSPSLNAC-FLAVPASTTKGSVLVYNVMELHSHCEIDAHQA---  180 (342)
Q Consensus       114 ~i~i~d~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~-~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~---  180 (342)
                      .|.-.|..+++.....+...+         +..+..+..++... .++.+.  .+|.+.++|..+++.+...+....   
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~--k~G~l~~lDr~tGe~~~~~~~~~~~~~  361 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP--KNGFFFVLDRTNGKFISAKNFVPVNWA  361 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC--TTSEEEEEETTTCCEEEEEESSCCSSE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeecc--ccceeEEeccccccccccccccccccc
Confidence            466677788877766655332         12223333333222 333443  689999999999987654321100   


Q ss_pred             --------------------------------CeeEEEECCCCCEEEEEeCC----------------------------
Q 019349          181 --------------------------------PLAAIVLSSNGMYIATASEQ----------------------------  200 (342)
Q Consensus       181 --------------------------------~v~~i~~s~dg~~lat~s~d----------------------------  200 (342)
                                                      .-..++++|+..++.....+                            
T Consensus       362 ~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  441 (573)
T d1kb0a2         362 SGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWN  441 (573)
T ss_dssp             EEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCC
T ss_pred             cccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccc
Confidence                                            01124678877766654332                            


Q ss_pred             ---------------CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCCC
Q 019349          201 ---------------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAINQ  262 (342)
Q Consensus       201 ---------------g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~~  262 (342)
                                     |+ +.-||+.+|+.+.+.+.+. +  ..+=.++-.+.   ++.+|+.||.++.||.+++++.
T Consensus       442 ~~~~~~~~p~~~~~~G~-l~AiD~~tGk~~W~~~~~~-p--~~gg~lstagg---lVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         442 TAKFFNAEPPKSKPFGR-LLAWDPVAQKAAWSVEHVS-P--WNGGTLTTAGN---VVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             CCEEECSSCCCSCCEEE-EEEEETTTTEEEEEEEESS-S--CCCCEEEETTT---EEEEECTTSEEEEEETTTCCEE
T ss_pred             cccccccCCCCCCCccc-EEEeCCCCCceEeeecCCC-C--CCCceEEEcCC---EEEEECCCCeEEEEECCCCcEe
Confidence                           23 3568888888887765432 1  11112233565   7888999999999999998863

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.75  E-value=0.18  Score=45.27  Aligned_cols=140  Identities=8%  Similarity=0.046  Sum_probs=87.0

Q ss_pred             eEEEEECCCCceeeEEeCCCCC---------ceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEEec-ccC---
Q 019349          114 KTYIYDANTLAILDTIDTVPNL---------KGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEIDA-HQA---  180 (342)
Q Consensus       114 ~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~-h~~---  180 (342)
                      .|.-.|+.+++....++...+.         ..+..+...+....++.... .+|.+.++|..+++.+...+. ...   
T Consensus       271 sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~-k~G~~~~lDr~tG~~i~~~~~~~~~~~~  349 (560)
T d1kv9a2         271 SILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAP-KNGFFYVLDRTNGKLISAEKFGKVTWAE  349 (560)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-TTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred             eeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecC-ccceEEEEecCCCccccccccccccccc
Confidence            5677788889887777654432         12333444433333333333 689999999999987643321 000   


Q ss_pred             --------------------------------CeeEEEECCCCCEEEEEeCC----------------------------
Q 019349          181 --------------------------------PLAAIVLSSNGMYIATASEQ----------------------------  200 (342)
Q Consensus       181 --------------------------------~v~~i~~s~dg~~lat~s~d----------------------------  200 (342)
                                                      .-...+++|+..++...+.+                            
T Consensus       350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  429 (560)
T d1kv9a2         350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT  429 (560)
T ss_dssp             EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred             ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence                                            01145678887777765432                            


Q ss_pred             --------CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          201 --------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       201 --------g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                              |. +.-||+.+|+.+.++..+..   ..+=.++-.+.   ++.+|+.||.++-+|.+++++
T Consensus       430 ~~p~~~~~G~-l~A~D~~tGk~~W~~~~~~~---~~gg~l~Tagg---lVF~G~~dg~l~A~Da~tGe~  491 (560)
T d1kv9a2         430 DVPAAVVSGA-LLAWDPVKQKAAWKVPYPTH---WNGGTLSTAGN---LVFQGTAAGQMHAYSADKGEA  491 (560)
T ss_dssp             CCCGGGCEEE-EEEEETTTTEEEEEEEESSS---CCCCEEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             CCCCcccccc-eEEEeCCCCeEeeeccCCCC---CCCceeEECCC---EEEEECCCCcEEEEECCCCcE
Confidence                    34 35789999998887654321   11112333455   788899999999999999876

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=96.72  E-value=0.15  Score=43.81  Aligned_cols=139  Identities=9%  Similarity=0.079  Sum_probs=85.5

Q ss_pred             CCeEEEEECCCCceeeEEeCCCCCceEEEEee--CCCccEEEEeCCC----------------CccEEEEEEccCCceeE
Q 019349          112 REKTYIYDANTLAILDTIDTVPNLKGLCAFSP--SLNACFLAVPAST----------------TKGSVLVYNVMELHSHC  173 (342)
Q Consensus       112 d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~----------------~~g~i~iwd~~~~~~~~  173 (342)
                      +++|.+-|+.+.+..+.+.. ++..+.-.+.+  .|+..+++..+..                ..+.+.++|..+.+...
T Consensus       109 n~RVAvIdl~~fkt~kIi~i-Pn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~  187 (459)
T d1fwxa2         109 NTRVARVRCDVMKCDAILEI-PNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAW  187 (459)
T ss_dssp             TTEEEEEETTTTEEEEEEEC-SSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEE
T ss_pred             CceEEEEECcceeeeEEEec-CCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEE
Confidence            56899999999887665544 44444444443  4556676654420                12457788999888766


Q ss_pred             EEecccCCeeEEEECCCCCEEEEEeCCCc---------------E----------------------EEEEEcCCC---e
Q 019349          174 EIDAHQAPLAAIVLSSNGMYIATASEQGT---------------I----------------------IRVFLVSEA---T  213 (342)
Q Consensus       174 ~~~~h~~~v~~i~~s~dg~~lat~s~dg~---------------~----------------------irlwd~~~~---~  213 (342)
                      .+.. ......+.+++||+++++.|.+..               +                      +++-|.+..   .
T Consensus       188 QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~  266 (459)
T d1fwxa2         188 QVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSL  266 (459)
T ss_dssp             EEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CS
T ss_pred             Eeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcc
Confidence            5553 234677899999999998874311               0                      133343321   1


Q ss_pred             eEEEeccCcCceeEEEEEEecCCCcccEEEEE-eCCCcEEEEecCC
Q 019349          214 KSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPGF  258 (342)
Q Consensus       214 ~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~-s~dg~i~vwd~~~  258 (342)
                      .+..+..+   ...+.+.++|||+   +++++ ..+.++.|+|+++
T Consensus       267 v~~yIPVp---KsPHGV~vSPDGK---yi~VaGKLs~tVSViD~~K  306 (459)
T d1fwxa2         267 FTRYIPIA---NNPHGCNMAPDKK---HLCVAGKLSPTVTVLDVTR  306 (459)
T ss_dssp             SEEEEEEE---SSCCCEEECTTSS---EEEEECTTSSBEEEEEGGG
T ss_pred             eeEEEecC---CCCCceEECCCCC---EEEEeCCcCCcEEEEEehh
Confidence            11111111   1245689999999   55555 5689999999864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.48  E-value=0.15  Score=40.91  Aligned_cols=228  Identities=5%  Similarity=-0.053  Sum_probs=125.7

Q ss_pred             CCEEEEEcCCcEEEEeCCCCc-------EEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcEEEEE
Q 019349           19 NSGFALSTKDGFKIFDSSTGR-------LCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTALREL   91 (342)
Q Consensus        19 ~~~la~g~~~g~~v~d~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~~~~~   91 (342)
                      |++|+-+....++-.+++...       .......+.+..+++....+.+.....      ..+.|...++..+.....+
T Consensus         1 ~~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~------~~~~I~~~~l~g~~~~~v~   74 (263)
T d1npea_           1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDI------SEPSIGRASLHGGEPTTII   74 (263)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEET------TTTEEEEEESSSCCCEEEE
T ss_pred             CCEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEEC------CCCeEEEEEcccCCcEEEE
Confidence            456777766677666654432       112222223334556666677766654      3678888888665544333


Q ss_pred             ecC-CceEEEEEc--CCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCC-CccEEEEEE
Q 019349           92 NFL-TSILAVRLN--KKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPAST-TKGSVLVYN  165 (342)
Q Consensus        92 ~~~-~~v~~i~~~--~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~g~i~iwd  165 (342)
                      ... ..+.+++++  .+.++.+.  .+.|.+.++........+...  ......++.+|...++...... ..+.|.--+
T Consensus        75 ~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~--l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~  152 (263)
T d1npea_          75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTG--LVNPRGIVTDPVRGNLYWTDWNRDNPKIETSH  152 (263)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEEETTTTEEEEEECCSSSCEEEEEE
T ss_pred             EeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEeccc--ccCCcEEEEecccCcEEEeecCCCCcEEEEec
Confidence            322 467777775  56666665  568999998755432222221  1234455555555555544211 123455455


Q ss_pred             ccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEE
Q 019349          166 VMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVAT  245 (342)
Q Consensus       166 ~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~  245 (342)
                      +............-...+.|++++.++.|.-+......|...|+..... ..+..+.  ....+|++. ++.   +..+-
T Consensus       153 ~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~-~~v~~~~--~~P~~lav~-~~~---lYwtd  225 (263)
T d1npea_         153 MDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGR-RKVLEGL--QYPFAVTSY-GKN---LYYTD  225 (263)
T ss_dssp             TTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEE-EEEEECC--CSEEEEEEE-TTE---EEEEE
T ss_pred             CCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCe-EEEECCC--CCcEEEEEE-CCE---EEEEE
Confidence            5543333323333345689999988887766643333456788854433 3332322  124578876 343   44555


Q ss_pred             eCCCcEEEEecCCCCC
Q 019349          246 SSSGSLHVFSPGFAIN  261 (342)
Q Consensus       246 s~dg~i~vwd~~~~~~  261 (342)
                      ...+.|...|..+++.
T Consensus       226 ~~~~~I~~~~~~~g~~  241 (263)
T d1npea_         226 WKTNSVIAMDLAISKE  241 (263)
T ss_dssp             TTTTEEEEEETTTTEE
T ss_pred             CCCCEEEEEECCCCcc
Confidence            5678888888776543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.07  E-value=0.37  Score=41.42  Aligned_cols=246  Identities=9%  Similarity=0.025  Sum_probs=125.0

Q ss_pred             eEEEEEcCCCCEEEEEcC-Cc-----EEEEeCCCCcEEEEE-eeCCEEEEEEcCCCCeEEEEcCCCCC---------CCC
Q 019349           10 VFFVSFNQDNSGFALSTK-DG-----FKIFDSSTGRLCYER-AVGAFSIVEMLYSSSLLAIVGAGEQP---------SLS   73 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~~-~g-----~~v~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~---------~~~   73 (342)
                      +...++|||++++|.+.+ +|     ++++|+.+++.+... .......+.|..++..+.........         ...
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            456788999999886533 23     589999999865432 11112346677788777665432110         112


Q ss_pred             CCeEEEEECCCCcE--EEEEecC---CceEEEEEcCCe--EEEEE----CC--eEEEEECCCCce-------eeEEeCCC
Q 019349           74 PRRLCLFNTTTGTA--LRELNFL---TSILAVRLNKKR--LVIVL----RE--KTYIYDANTLAI-------LDTIDTVP  133 (342)
Q Consensus        74 d~~i~iwd~~~~~~--~~~~~~~---~~v~~i~~~~~~--~~~~~----d~--~i~i~d~~~~~~-------~~~~~~~~  133 (342)
                      ...|..|.+.+...  +..+...   ..+..+..++++  +++..    ..  .+.+.++.....       ...+....
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~  286 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNF  286 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSS
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeeccc
Confidence            45788888877543  2223322   235566666553  33322    22  344555543210       11111111


Q ss_pred             CCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce---eEEEecccCCeeEEEECCCCCEEEEEe-CCCc-EEEEEE
Q 019349          134 NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS---HCEIDAHQAPLAAIVLSSNGMYIATAS-EQGT-IIRVFL  208 (342)
Q Consensus       134 ~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~---~~~~~~h~~~v~~i~~s~dg~~lat~s-~dg~-~irlwd  208 (342)
                       ......+...++..++.+.-...++.|...++.....   ...+..+...+..-.++..+.+|+..- .++. .|++++
T Consensus       287 -~~~~~~~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~~  365 (430)
T d1qfma1         287 -EGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHD  365 (430)
T ss_dssp             -SSCEEEEEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEE
T ss_pred             -ccceEEEecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEEE
Confidence             1112223333333233332211357777778765432   223444555555444444455666554 4442 257899


Q ss_pred             cCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeC-C--CcEEEEecCCCC
Q 019349          209 VSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS-S--GSLHVFSPGFAI  260 (342)
Q Consensus       209 ~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~-d--g~i~vwd~~~~~  260 (342)
                      ..+++....+...  .+.+..+...++..  .+...-++ -  .+++-+|+++++
T Consensus       366 ~~~~~~~~~~~~~--~~sv~~~~~~~~~~--~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         366 LATGALLKIFPLE--VGSVVGYSGQKKDT--EIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             TTTCCEEEEECCC--SSEEEEEECCTTCS--EEEEEEECSSCCCEEEEEETTSSS
T ss_pred             CCCCcEEEecCCC--CceEeeccCCCCCC--EEEEEEcCCCCCCeEEEEECCCCC
Confidence            9887765443322  33465555555554  13333222 1  568888887764

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.03  E-value=0.48  Score=42.38  Aligned_cols=86  Identities=9%  Similarity=0.200  Sum_probs=56.0

Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCC
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (342)
                      .|.|.-||+.+++.+-.++. ..+...=.++-.|.++.+|+.||. +|-+|.++|+.+.+++.+... .-.=+.+..||+
T Consensus       437 ~G~l~A~D~~tGk~~W~~~~-~~~~~gg~l~TagglVF~G~~dg~-l~A~Da~tGe~LW~~~l~~~~-~~~P~ty~~dGk  513 (560)
T d1kv9a2         437 SGALLAWDPVKQKAAWKVPY-PTHWNGGTLSTAGNLVFQGTAAGQ-MHAYSADKGEALWQFEAQSGI-VAAPMTFELAGR  513 (560)
T ss_dssp             EEEEEEEETTTTEEEEEEEE-SSSCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCC-CSCCEEEEETTE
T ss_pred             ccceEEEeCCCCeEeeeccC-CCCCCCceeEECCCEEEEECCCCc-EEEEECCCCcEeEEEECCCCc-cccCEEEEECCE
Confidence            47889999999988765542 122222223345678888999997 589999999999988654311 111256667775


Q ss_pred             cccEEEEEeCC
Q 019349          238 FQDILVATSSS  248 (342)
Q Consensus       238 ~~~~l~~~s~d  248 (342)
                        -|+++.+..
T Consensus       514 --qyv~v~aG~  522 (560)
T d1kv9a2         514 --QYVAIMAGW  522 (560)
T ss_dssp             --EEEEEEECC
T ss_pred             --EEEEEEeCC
Confidence              266665543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=95.92  E-value=0.43  Score=40.85  Aligned_cols=227  Identities=11%  Similarity=0.077  Sum_probs=123.2

Q ss_pred             EEEEcC---CCCEEEEEcCCc--EEEEeCCCCcEEE--EEe-eCCEEEEEEc--CCCCeEEEEcCCCCCCCC--------
Q 019349           12 FVSFNQ---DNSGFALSTKDG--FKIFDSSTGRLCY--ERA-VGAFSIVEML--YSSSLLAIVGAGEQPSLS--------   73 (342)
Q Consensus        12 ~l~fs~---d~~~la~g~~~g--~~v~d~~~~~~~~--~~~-~~~~~~~~~~--~~~~~~~~~~~g~~~~~~--------   73 (342)
                      .++|..   ||++|.+.....  +-+-|+++.+...  +.. ....-.+...  ....+++..+...-|.-.        
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            566665   899988776543  6778998886532  221 1222222222  334454443321111111        


Q ss_pred             ---CCeEEEEECCCCcEEEEEecCCceEEEEEcCCe--EEEEE---C-------------CeEEEE--------------
Q 019349           74 ---PRRLCLFNTTTGTALRELNFLTSILAVRLNKKR--LVIVL---R-------------EKTYIY--------------  118 (342)
Q Consensus        74 ---d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~~~--~~~~~---d-------------~~i~i~--------------  118 (342)
                         .+.+..+|..+.+....+........+.+++++  .++.+   +             +.+.++              
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~  248 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY  248 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred             hhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence               144678899998888888776665566665543  22222   1             123333              


Q ss_pred             ---------ECCC---CceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCce-----------eEEE
Q 019349          119 ---------DANT---LAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHS-----------HCEI  175 (342)
Q Consensus       119 ---------d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~-----------~~~~  175 (342)
                               |...   ...++.+..+..+.+   +..+||+.++++++. .+.++.|+|++....           +..-
T Consensus       249 ~eingV~VVD~~~~~~~~v~~yIPVpKsPHG---V~vSPDGKyi~VaGK-Ls~tVSViD~~Ki~~~~~~~~~~~~~~~~e  324 (459)
T d1fwxa2         249 QELNGVKVVDGRKEASSLFTRYIPIANNPHG---CNMAPDKKHLCVAGK-LSPTVTVLDVTRFDAVFYENADPRSAVVAE  324 (459)
T ss_dssp             EEETTEEEEECSGG--CSSEEEEEEESSCCC---EEECTTSSEEEEECT-TSSBEEEEEGGGHHHHHHSCC-GGGGEEEC
T ss_pred             EEeCCceeecccccCCcceeEEEecCCCCCc---eEECCCCCEEEEeCC-cCCcEEEEEehhhhhhhcccCCccccEEee
Confidence                     3322   122333333333333   356788999999987 799999999864321           1111


Q ss_pred             ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCC----------eeEEEeccCcCceeEEEE---EEecCCCcccEE
Q 019349          176 DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEA----------TKSYSFRRGTYPSTIFSL---SFGQSMQFQDIL  242 (342)
Q Consensus       176 ~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~----------~~~~~~~~~~~~~~v~~l---~fs~d~~~~~~l  242 (342)
                      ....-.-..-+|+.+|+-..|---|..++ -|++...          ..+.++.-+..+++....   ...|||+   +|
T Consensus       325 ~elglgPLht~fd~~g~aytslfids~v~-kw~~~~~~~~~~~~~~~~v~~k~~v~y~~gh~~~~~g~t~~~dgk---~l  400 (459)
T d1fwxa2         325 PELGLGPLHTAFDGRGNAYTSLFLDSQVV-KWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATND---WL  400 (459)
T ss_dssp             CBCCSCEEEEEECTTSEEEEEETTTTEEE-EEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSS---EE
T ss_pred             cccCcCccccccCCCceEEEEeeccceEE-EEecchhhhhhccccCCcceeccccccCCCCCccCcCCcCCCCCC---EE
Confidence            11222345567999886555556787765 7998432          334444433333332211   2468888   88


Q ss_pred             EEEe
Q 019349          243 VATS  246 (342)
Q Consensus       243 ~~~s  246 (342)
                      ++..
T Consensus       401 ~~~n  404 (459)
T d1fwxa2         401 VCLS  404 (459)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            7664

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.75  E-value=0.66  Score=41.78  Aligned_cols=139  Identities=9%  Similarity=0.039  Sum_probs=82.1

Q ss_pred             eEEEEECCCCceeeEEeCCCCC-------ce-EEEEee--CCC-ccEEEEeCCCCccEEEEEEccCCceeEEEeccc---
Q 019349          114 KTYIYDANTLAILDTIDTVPNL-------KG-LCAFSP--SLN-ACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQ---  179 (342)
Q Consensus       114 ~i~i~d~~~~~~~~~~~~~~~~-------~~-~~~~~~--~~~-~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~---  179 (342)
                      .+.-.|..+++....++...+.       .. +..-..  ++. ...++...  .+|.+.++|..+++.+...+.-.   
T Consensus       279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~--k~G~~~vlDr~tG~~i~~~~~~~~~~  356 (596)
T d1w6sa_         279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPD--RNGIVYTLDRTDGALVSANKLDDTVN  356 (596)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEEC--TTSEEEEEETTTCCEEEEEESSTTCC
T ss_pred             cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccc--cccceeeecCCCCceeeecccccccc
Confidence            4777899999988877654431       11 111112  222 23455555  58999999999998764322100   


Q ss_pred             ----------CC--------------------------eeEEEECCCCCEEEEEeCC-----------------------
Q 019349          180 ----------AP--------------------------LAAIVLSSNGMYIATASEQ-----------------------  200 (342)
Q Consensus       180 ----------~~--------------------------v~~i~~s~dg~~lat~s~d-----------------------  200 (342)
                                .+                          -..++++|+..++.....+                       
T Consensus       357 ~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~  436 (596)
T d1w6sa_         357 VFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATL  436 (596)
T ss_dssp             SEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEE
T ss_pred             ccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccccccccccccccccccc
Confidence                      00                          0134667766665544321                       


Q ss_pred             ----------------CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          201 ----------------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       201 ----------------g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                                      |. +.-||+.+|+.+.+.....   .+.+=.++-.+.   ++..|+.||.++-+|.++++.
T Consensus       437 ~~~~~~~g~~~~~~~~G~-l~A~D~~TG~~~W~~~~~~---~~~gg~lsTagg---lVF~G~~Dg~l~A~Da~TGe~  506 (596)
T d1w6sa_         437 NMYPGPKGDRQNYEGLGQ-IKAYNAITGDYKWEKMERF---AVWGGTMATAGD---LVFYGTLDGYLKARDSDTGDL  506 (596)
T ss_dssp             EEEECTTSBTTTTBCCEE-EEEECTTTCCEEEEEEESS---CCCSBCEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             ccccCcccCcccCCCcce-EEEEeCCCCceecccCCCC---CCccceeEecCC---EEEEECCCCeEEEEECCCCcE
Confidence                            33 4578888888776553221   111112233455   788899999999999999876

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.74  E-value=0.35  Score=38.58  Aligned_cols=212  Identities=8%  Similarity=-0.009  Sum_probs=117.9

Q ss_pred             eEEEEEcCCCCEEEEEcCC-c-EEEEeCCCCcEEEEE--eeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCC
Q 019349           10 VFFVSFNQDNSGFALSTKD-G-FKIFDSSTGRLCYER--AVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTG   85 (342)
Q Consensus        10 V~~l~fs~d~~~la~g~~~-g-~~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~   85 (342)
                      +..++|++..+.|.-+... + ++..+++......-.  .......+++.+..+.+..+..      ..+.|.+.++...
T Consensus        38 ~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~------~~~~I~~~~~dg~  111 (263)
T d1npea_          38 IIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDS------QLDRIEVAKMDGT  111 (263)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEET------TTTEEEEEETTSC
T ss_pred             EEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEecc------CCCEEEEEecCCc
Confidence            6678999888877765432 3 566666655332222  1234445566665666666654      3678999998755


Q ss_pred             cEEEEEec-CCceEEEEEcCC-e-EEEEEC--Ce--EEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCc
Q 019349           86 TALRELNF-LTSILAVRLNKK-R-LVIVLR--EK--TYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTK  158 (342)
Q Consensus        86 ~~~~~~~~-~~~v~~i~~~~~-~-~~~~~d--~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  158 (342)
                      .....+.. ...+..++++|. + ++....  +.  |.--++..... ..+.. .+-....+++.++....|..+.. ..
T Consensus       112 ~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~-~~i~~-~~~~~P~glaiD~~~~~lYw~d~-~~  188 (263)
T d1npea_         112 QRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-RILAQ-DNLGLPNGLTFDAFSSQLCWVDA-GT  188 (263)
T ss_dssp             SCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-EEEEC-TTCSCEEEEEEETTTTEEEEEET-TT
T ss_pred             eEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc-eeeee-ecccccceEEEeecCcEEEEEeC-CC
Confidence            44333332 246788888764 3 333332  23  44445543322 22322 22233456666655556655543 46


Q ss_pred             cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEe-CCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecC
Q 019349          159 GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATAS-EQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQS  235 (342)
Q Consensus       159 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s-~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d  235 (342)
                      +.|...|+........+.+-..| ..|++.  +.+|.-.. ..++ |...|..+++.+..+.... .....+++..++
T Consensus       189 ~~I~~~~~~g~~~~~v~~~~~~P-~~lav~--~~~lYwtd~~~~~-I~~~~~~~g~~~~~~~~~~-~~~~~gi~v~~~  261 (263)
T d1npea_         189 HRAECLNPAQPGRRKVLEGLQYP-FAVTSY--GKNLYYTDWKTNS-VIAMDLAISKEMDTFHPHK-QTRLYGITIALS  261 (263)
T ss_dssp             TEEEEEETTEEEEEEEEECCCSE-EEEEEE--TTEEEEEETTTTE-EEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred             CEEEEEECCCCCeEEEECCCCCc-EEEEEE--CCEEEEEECCCCE-EEEEECCCCccceEECCCC-CCCcceEEEeCC
Confidence            88999998765544344443333 578775  34555444 4455 5678998898877664322 223445555544

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.53  E-value=0.78  Score=41.04  Aligned_cols=82  Identities=11%  Similarity=0.230  Sum_probs=54.3

Q ss_pred             cEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcC--ceeEEEEEEecCC
Q 019349          159 GSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTY--PSTIFSLSFGQSM  236 (342)
Q Consensus       159 g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~--~~~v~~l~fs~d~  236 (342)
                      |.+.-||+.+++.+-..+... +...=.++-.|.+|.+|+.||. ++.+|.++|+.+.+++.+..  ..+   +.|..||
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~-p~~gg~lstagglVF~G~~dg~-l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~G  531 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGR-LVAYHAATGEKLWEAPTGTGVVAAP---STYMVDG  531 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESS-SCCCCEEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCCCSCC---EEEEETT
T ss_pred             ccEEEeCCCCCceEeeecCCC-CCCCceEEEcCCEEEEECCCCe-EEEEECCCCcEeEEEECCCCccccC---EEEEECC
Confidence            678889999998876654322 2221123346778888999997 58999999999998865421  122   4566677


Q ss_pred             CcccEEEEEeC
Q 019349          237 QFQDILVATSS  247 (342)
Q Consensus       237 ~~~~~l~~~s~  247 (342)
                      +  -|++..+.
T Consensus       532 k--QYv~v~~G  540 (573)
T d1kb0a2         532 R--QYVSVAVG  540 (573)
T ss_dssp             E--EEEEEEEC
T ss_pred             E--EEEEEEeC
Confidence            5  15555543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.47  Score=37.88  Aligned_cols=229  Identities=7%  Similarity=-0.042  Sum_probs=123.5

Q ss_pred             EEEEEcCCcEEEEeCCCCcEEEE-EeeCCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCcE---EEE-Eec-C
Q 019349           21 GFALSTKDGFKIFDSSTGRLCYE-RAVGAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGTA---LRE-LNF-L   94 (342)
Q Consensus        21 ~la~g~~~g~~v~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~~---~~~-~~~-~   94 (342)
                      +|..+....++.+++++.....- .....+..+++....+.+..+..      ..+.|.--++.....   ... +.. .
T Consensus         3 fLl~s~~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~------~~~~I~~~~l~~~~~~~~~~~~~~~~~   76 (266)
T d1ijqa1           3 YLFFTNRHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDL------SQRMICSTQLDRAHGVSSYDTVISRDI   76 (266)
T ss_dssp             EEEEECBSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEET------TTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECCCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEEC------CCCEEEEEEecCCCCCcceEEEEeCCC
Confidence            46666666787788876543221 12234444555556666665543      356666655532111   111 111 1


Q ss_pred             CceEEEEE--cCCeEEEEE--CCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCc
Q 019349           95 TSILAVRL--NKKRLVIVL--REKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELH  170 (342)
Q Consensus        95 ~~v~~i~~--~~~~~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~  170 (342)
                      ..+.++++  ....++.+.  .++|.+.++........+.....  ....++.+|...++........+.|.-.++....
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~--~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~  154 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGS--KPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD  154 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTC--CEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCC--CcceEEEEcccCeEEEeccCCCcceeEeccCCCc
Confidence            24555665  466677766  56899999976654443433222  2344444554445544432235677777776544


Q ss_pred             eeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCc
Q 019349          171 SHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGS  250 (342)
Q Consensus       171 ~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~  250 (342)
                      ........-...+.|++++.++.|.-+......|...|+...................+|++.. +.   ++.+-..++.
T Consensus       155 ~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~~-~~---ly~td~~~~~  230 (266)
T d1ijqa1         155 IYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DK---VFWTDIINEA  230 (266)
T ss_dssp             EEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TE---EEEEETTTTE
T ss_pred             eecccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEEC-CE---EEEEECCCCe
Confidence            4333333345678999999888777765443346777875433222221111122356788773 33   5555567788


Q ss_pred             EEEEecCCCCC
Q 019349          251 LHVFSPGFAIN  261 (342)
Q Consensus       251 i~vwd~~~~~~  261 (342)
                      |+..+..++..
T Consensus       231 I~~~~~~~g~~  241 (266)
T d1ijqa1         231 IFSANRLTGSD  241 (266)
T ss_dssp             EEEEETTTCCC
T ss_pred             EEEEECCCCcc
Confidence            88887665543

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.80  E-value=0.9  Score=37.72  Aligned_cols=76  Identities=9%  Similarity=0.124  Sum_probs=44.7

Q ss_pred             EEEEcCCCCEEEEEcCC--cEEEEeCCCCcEEEEEee---CCEEEEEEcCCCCeEEEEcCCCCCCCCCCeEEEEECCCCc
Q 019349           12 FVSFNQDNSGFALSTKD--GFKIFDSSTGRLCYERAV---GAFSIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTTTGT   86 (342)
Q Consensus        12 ~l~fs~d~~~la~g~~~--g~~v~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~g~~~~~~d~~i~iwd~~~~~   86 (342)
                      ..++.+||..++.|..+  .+.+||..+.+-......   ..........++..+ +.++........+.+.+||..+++
T Consensus        80 ~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~-v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3          80 GISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVF-TIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             EEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEE-EECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCcee-eeccccccccccceeeeecCCCCc
Confidence            56788999998888654  479999887654322111   111123334455444 444433322334679999998876


Q ss_pred             EE
Q 019349           87 AL   88 (342)
Q Consensus        87 ~~   88 (342)
                      ..
T Consensus       159 W~  160 (387)
T d1k3ia3         159 WT  160 (387)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.74  E-value=1.3  Score=39.49  Aligned_cols=84  Identities=21%  Similarity=0.256  Sum_probs=56.1

Q ss_pred             ccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCC
Q 019349          158 KGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQ  237 (342)
Q Consensus       158 ~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~  237 (342)
                      .|.|.-+|+.+++.+-..+.+. ++..=.++..|.++.+|+.||. +|-+|.++|+++.+++.+... .-.=|.|..||+
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~-p~~~g~lstagglVF~Gt~dg~-l~A~Da~TGe~LW~~~~~~~~-~~~P~ty~~~G~  541 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGY-FKAFDAKSGKELWKFQTGSGI-VSPPITWEQDGE  541 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESS-CCCSCCEEETTTEEEEECTTSE-EEEEETTTCCEEEEEECSSCC-CSCCEEEEETTE
T ss_pred             CCeEEEEcCCCCcEEeecCCCC-CCccceeEEcCCeEEEeCCCCe-EEEEECCCCcEeEEEECCCCc-cccCEEEEECCE
Confidence            3778889999998876665432 2222223456778888999997 589999999999988654211 111256778885


Q ss_pred             cccEEEEEe
Q 019349          238 FQDILVATS  246 (342)
Q Consensus       238 ~~~~l~~~s  246 (342)
                        -|++..+
T Consensus       542 --qYv~i~a  548 (582)
T d1flga_         542 --QYLGVTV  548 (582)
T ss_dssp             --EEEEEEE
T ss_pred             --EEEEEEe
Confidence              1565544

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=94.40  E-value=0.27  Score=41.20  Aligned_cols=96  Identities=11%  Similarity=0.013  Sum_probs=62.2

Q ss_pred             EEEEEEccCCcee--EEE-ecccCCeeEEEECCCCCEEEEEeCCCcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCC
Q 019349          160 SVLVYNVMELHSH--CEI-DAHQAPLAAIVLSSNGMYIATASEQGTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSM  236 (342)
Q Consensus       160 ~i~iwd~~~~~~~--~~~-~~h~~~v~~i~~s~dg~~lat~s~dg~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~  236 (342)
                      .+.+||..+++-.  ... ..|.......++.+||+.++.|+.+...+.+||..+.+-. .......+..-.+++..+|+
T Consensus        53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~-~~~~~~~~r~~~~~~~~~dG  131 (387)
T d1k3ia3          53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI-PGPDMQVARGYQSSATMSDG  131 (387)
T ss_dssp             EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE-ECCCCSSCCSSCEEEECTTS
T ss_pred             EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCccc-ccccccccccccceeeecCC
Confidence            4778999876522  122 2333334566788999999999877655789999877542 22111111113456777899


Q ss_pred             CcccEEEEEeCC------CcEEEEecCCC
Q 019349          237 QFQDILVATSSS------GSLHVFSPGFA  259 (342)
Q Consensus       237 ~~~~~l~~~s~d------g~i~vwd~~~~  259 (342)
                      +   +++.++.+      +.+.+||..+.
T Consensus       132 ~---v~v~GG~~~~~~~~~~v~~yd~~~~  157 (387)
T d1k3ia3         132 R---VFTIGGSWSGGVFEKNGEVYSPSSK  157 (387)
T ss_dssp             C---EEEECCCCCSSSCCCCEEEEETTTT
T ss_pred             c---eeeeccccccccccceeeeecCCCC
Confidence            8   88887753      46999998764

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.24  E-value=1.2  Score=36.82  Aligned_cols=141  Identities=15%  Similarity=0.117  Sum_probs=76.9

Q ss_pred             CeEEEEECCCCce-eeEE--eC-C-----CCCceEEEEeeCCCcc-EEEEeCC-CCccEEEEEEccCCce-e---EEEec
Q 019349          113 EKTYIYDANTLAI-LDTI--DT-V-----PNLKGLCAFSPSLNAC-FLAVPAS-TTKGSVLVYNVMELHS-H---CEIDA  177 (342)
Q Consensus       113 ~~i~i~d~~~~~~-~~~~--~~-~-----~~~~~~~~~~~~~~~~-~l~~~~~-~~~g~i~iwd~~~~~~-~---~~~~~  177 (342)
                      |.|.++|+.+.+. ...+  .. .     .+|.++- +-...++. +|++... ....+|.+|++..... +   .++..
T Consensus        68 G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~-l~~~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~  146 (340)
T d1v04a_          68 GKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGIS-TFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH  146 (340)
T ss_dssp             CEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEE-EEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC
T ss_pred             CeEEEEecCCCCCcceEEEecCCCCCCcceecccee-EEEcCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCC
Confidence            7899999976532 1122  11 1     1233332 22233443 3444322 1457899998854432 2   22221


Q ss_pred             -ccCCeeEEEECCCCCEEEEEeC---C------------CcEEEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccE
Q 019349          178 -HQAPLAAIVLSSNGMYIATASE---Q------------GTIIRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDI  241 (342)
Q Consensus       178 -h~~~v~~i~~s~dg~~lat~s~---d------------g~~irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~  241 (342)
                       .....+.|++..+|.+++|-..   +            ++. .+|....++.. ....+  -.-.+.|+++||++.  +
T Consensus       147 ~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g-~v~~~~~~~~~-~~~~~--l~~pNGI~~s~d~~~--l  220 (340)
T d1v04a_         147 KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWS-FVTYYSPNDVR-VVAEG--FDFANGINISPDGKY--V  220 (340)
T ss_dssp             TTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCE-EEEEECSSCEE-EEEEE--ESSEEEEEECTTSSE--E
T ss_pred             ccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCce-eEEEEcCCceE-EEcCC--CCccceeEECCCCCE--E
Confidence             2245789999999999998421   0            121 34444433321 11111  123688999999972  4


Q ss_pred             EEEEeCCCcEEEEecCCCC
Q 019349          242 LVATSSSGSLHVFSPGFAI  260 (342)
Q Consensus       242 l~~~s~dg~i~vwd~~~~~  260 (342)
                      +++-+..+.|++|+++...
T Consensus       221 yVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         221 YIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             EEEEGGGTEEEEEEECTTS
T ss_pred             EEEeCCCCeEEEEEeCCCc
Confidence            4555678899999997543

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.01  E-value=2  Score=38.48  Aligned_cols=145  Identities=9%  Similarity=0.047  Sum_probs=86.1

Q ss_pred             CCCeEEEEECCCCcEEEEEecCC-----ceE-EEEEcCCeEEEEE-------CCeEEEEECCCCceeeEEeCCCCC----
Q 019349           73 SPRRLCLFNTTTGTALRELNFLT-----SIL-AVRLNKKRLVIVL-------REKTYIYDANTLAILDTIDTVPNL----  135 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~-----~v~-~i~~~~~~~~~~~-------d~~i~i~d~~~~~~~~~~~~~~~~----  135 (342)
                      .|+.|.-.|.++|+.+..+....     .+. .-.+..+.+++..       .+.|+-||..+++++.++.+....    
T Consensus       129 ~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~  208 (596)
T d1w6sa_         129 LDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVVKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLL  208 (596)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHT
T ss_pred             CCCCeEeeccccCceeccccccccccccccccCCcEECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccc
Confidence            47899999999999998875421     111 1123455666543       378999999999999887543210    


Q ss_pred             --------------------------------ceEEEEeeCCCccEEEEeCCC--------------CccEEEEEEccCC
Q 019349          136 --------------------------------KGLCAFSPSLNACFLAVPAST--------------TKGSVLVYNVMEL  169 (342)
Q Consensus       136 --------------------------------~~~~~~~~~~~~~~l~~~~~~--------------~~g~i~iwd~~~~  169 (342)
                                                      ..-...+.++....+..+...              ....|.-.|+.++
T Consensus       209 ~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG  288 (596)
T d1w6sa_         209 LASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTG  288 (596)
T ss_dssp             BCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTC
T ss_pred             cccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccc
Confidence                                            000112223333333222110              1356888899999


Q ss_pred             ceeEEEec--cc-------CCeeEEE-ECCCCC---EEEEEeCCCcEEEEEEcCCCeeEEEe
Q 019349          170 HSHCEIDA--HQ-------APLAAIV-LSSNGM---YIATASEQGTIIRVFLVSEATKSYSF  218 (342)
Q Consensus       170 ~~~~~~~~--h~-------~~v~~i~-~s~dg~---~lat~s~dg~~irlwd~~~~~~~~~~  218 (342)
                      +.+-.++.  |.       ..+..+. ...+|+   .++.+..+|.+ .++|-.+|+.+...
T Consensus       289 ~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~-~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         289 EAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIV-YTLDRTDGALVSAN  349 (596)
T ss_dssp             CEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEE-EEEETTTCCEEEEE
T ss_pred             cccccccceeccccCCccccceeeeeccccccccccceeccccccce-eeecCCCCceeeec
Confidence            98766653  21       1122222 234553   57778888864 69999999987543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.63  E-value=1.3  Score=35.09  Aligned_cols=178  Identities=11%  Similarity=0.010  Sum_probs=97.9

Q ss_pred             CCeEEEEECCCCcEEEEEecCCceEEEEEcC--CeEEEEE--CCeEEEEECCCCc---eeeEEeCCCCCceEEEEeeCCC
Q 019349           74 PRRLCLFNTTTGTALRELNFLTSILAVRLNK--KRLVIVL--REKTYIYDANTLA---ILDTIDTVPNLKGLCAFSPSLN  146 (342)
Q Consensus        74 d~~i~iwd~~~~~~~~~~~~~~~v~~i~~~~--~~~~~~~--d~~i~i~d~~~~~---~~~~~~~~~~~~~~~~~~~~~~  146 (342)
                      .+.|+-.++.+.....-+.....+.++.++.  +.++.+.  .+.|+-.++....   ....+.. .......+++.+.-
T Consensus         9 ~~~I~~~~l~~~~~~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~-~~~~~p~glAvD~~   87 (266)
T d1ijqa1           9 RHEVRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWI   87 (266)
T ss_dssp             BSSEEEEETTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEEETT
T ss_pred             CCeEEEEECCCCcceeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEe-CCCCCcceEEEeec
Confidence            3568888887765444444445677888764  4455544  4566666664321   1112211 11112223343332


Q ss_pred             ccEEEEeCCCCccEEEEEEccCCceeEEEecccCCeeEEEECCCCCEE-EEEe-CCCcEEEEEEcCCCeeEEEeccCcCc
Q 019349          147 ACFLAVPASTTKGSVLVYNVMELHSHCEIDAHQAPLAAIVLSSNGMYI-ATAS-EQGTIIRVFLVSEATKSYSFRRGTYP  224 (342)
Q Consensus       147 ~~~l~~~~~~~~g~i~iwd~~~~~~~~~~~~h~~~v~~i~~s~dg~~l-at~s-~dg~~irlwd~~~~~~~~~~~~~~~~  224 (342)
                      +..|..+.. ..+.|.+.++........+.........|+++|...+| .+.. ..+. |.-.++. |.....+... ..
T Consensus        88 ~~~lY~~d~-~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~-I~r~~~d-Gs~~~~l~~~-~~  163 (266)
T d1ijqa1          88 HSNIYWTDS-VLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAK-IKKGGLN-GVDIYSLVTE-NI  163 (266)
T ss_dssp             TTEEEEEET-TTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCE-EEEEETT-SCCEEEEECS-SC
T ss_pred             cceEEEEec-CCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcc-eeEeccC-CCceeccccc-cc
Confidence            334444433 46899999998766555555555678899999855444 4432 2333 3345553 4333333221 12


Q ss_pred             eeEEEEEEecCCCcccEEEEE-eCCCcEEEEecCCC
Q 019349          225 STIFSLSFGQSMQFQDILVAT-SSSGSLHVFSPGFA  259 (342)
Q Consensus       225 ~~v~~l~fs~d~~~~~~l~~~-s~dg~i~vwd~~~~  259 (342)
                      ....+|++.+.+.   .|..+ +..+.|...+++..
T Consensus       164 ~~p~gl~iD~~~~---~lYw~d~~~~~I~~~~~dG~  196 (266)
T d1ijqa1         164 QWPNGITLDLLSG---RLYWVDSKLHSISSIDVNGG  196 (266)
T ss_dssp             SCEEEEEEETTTT---EEEEEETTTTEEEEEETTSC
T ss_pred             ceeeEEEeecccc---EEEEecCCcCEEEEEECCCC
Confidence            3467899998776   55554 66788998888654

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.59  E-value=2.3  Score=37.85  Aligned_cols=52  Identities=6%  Similarity=0.164  Sum_probs=37.0

Q ss_pred             EEEEEcCCCeeEEEeccCcCceeEEEEEEecCCCcccEEEEEeCCCcEEEEecCCCCC
Q 019349          204 IRVFLVSEATKSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSSSGSLHVFSPGFAIN  261 (342)
Q Consensus       204 irlwd~~~~~~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~dg~i~vwd~~~~~~  261 (342)
                      +.-+|+.+|+.+.+++.+.   ++.+=.++-.+.   ++.+|+.||.++-||.+++++
T Consensus       468 l~AiD~~TG~i~W~~~~~~---p~~~g~lstagg---lVF~Gt~dg~l~A~Da~TGe~  519 (582)
T d1flga_         468 LRAMDPVSGKVVWEHKEHL---PLWAGVLATAGN---LVFTGTGDGYFKAFDAKSGKE  519 (582)
T ss_dssp             EEEECTTTCCEEEEEEESS---CCCSCCEEETTT---EEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEcCCCCcEEeecCCCC---CCccceeEEcCC---eEEEeCCCCeEEEEECCCCcE
Confidence            4578888998887765332   222212344565   788899999999999999886

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.13  E-value=2.7  Score=34.79  Aligned_cols=181  Identities=13%  Similarity=0.141  Sum_probs=99.1

Q ss_pred             CCCeEEEEECCCCcEEEEEecCCceEEEEE------cCC--eEEEEEC-----CeEEEEECCC-CceeeEEeCCC-----
Q 019349           73 SPRRLCLFNTTTGTALRELNFLTSILAVRL------NKK--RLVIVLR-----EKTYIYDANT-LAILDTIDTVP-----  133 (342)
Q Consensus        73 ~d~~i~iwd~~~~~~~~~~~~~~~v~~i~~------~~~--~~~~~~d-----~~i~i~d~~~-~~~~~~~~~~~-----  133 (342)
                      ..+-|.++|+. |+.+..+.. +.+..|.+      ..+  .++++++     .+|.+|.+.. ...+..+....     
T Consensus        48 K~~Gl~vYdL~-G~~l~~~~~-Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~  125 (353)
T d1h6la_          48 KKSGLAVYSLE-GKMLHSYHT-GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIAS  125 (353)
T ss_dssp             TTSCCEEEETT-CCEEEECCS-SCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEEC
T ss_pred             CcCCEEEEcCC-CcEEEeccc-CCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccccccccc
Confidence            34569999984 888776643 44555443      222  2445552     3688887742 23333332211     


Q ss_pred             ---CCceEEEEeeCCCccEEEEeCCCCccEEEEEEcc---CC----ceeEEEecccCCeeEEEECCCCCEEEEEeCCCcE
Q 019349          134 ---NLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVM---EL----HSHCEIDAHQAPLAAIVLSSNGMYIATASEQGTI  203 (342)
Q Consensus       134 ---~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~---~~----~~~~~~~~h~~~v~~i~~s~dg~~lat~s~dg~~  203 (342)
                         .+.++|......++...+.... .+|.+..|.+.   .+    +.++.+.. ...+..|.+.++...|..+-++.. 
T Consensus       126 ~~~~vYGlc~y~~~~~g~~~afv~~-k~G~v~q~~l~~~~~g~v~~~lvr~f~~-~~q~EGCVvDde~~~LyisEE~~G-  202 (353)
T d1h6la_         126 AIDEVYGFSLYHSQKTGKYYAMVTG-KEGEFEQYELNADKNGYISGKKVRAFKM-NSQTEGMAADDEYGSLYIAEEDEA-  202 (353)
T ss_dssp             SSSSCCCEEEEECTTTCCEEEEEEC-SSSEEEEEEEEECTTSSEEEEEEEEEEC-SSCEEEEEEETTTTEEEEEETTTE-
T ss_pred             ccCcceEEEEEecCCCCeEEEEEEc-CCceEEEEEEEcCCCCceeeEeeeccCC-CCccceEEEeCCCCcEEEecCccc-
Confidence               2334444332233444443333 57999998773   22    23445543 456889999999899999887754 


Q ss_pred             EEEEEcC-----CCeeEEEeccCcCceeEEEEEEe--cCCCcccEEEEEeCCCcEEEEecCCC
Q 019349          204 IRVFLVS-----EATKSYSFRRGTYPSTIFSLSFG--QSMQFQDILVATSSSGSLHVFSPGFA  259 (342)
Q Consensus       204 irlwd~~-----~~~~~~~~~~~~~~~~v~~l~fs--~d~~~~~~l~~~s~dg~i~vwd~~~~  259 (342)
                      |..++..     .+..+.....+.-.+.+-.|++-  +++.+ -+|++.-.+++..|||.+.+
T Consensus       203 iw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~G-ylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         203 IWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKG-YLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCE-EEEEEEGGGTEEEEEESSTT
T ss_pred             eEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCe-EEEEEcCCCCeEEEEecCCC
Confidence            3344443     12233332222223446677654  33331 14444456789999998764

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=91.12  E-value=3.4  Score=34.95  Aligned_cols=102  Identities=7%  Similarity=0.029  Sum_probs=62.3

Q ss_pred             EEEEeeCCCccEEEEe----CCCCccEEEEEEccCCceeE-EEecccCCeeEEEECCCCCEEEEEeCCC-----------
Q 019349          138 LCAFSPSLNACFLAVP----ASTTKGSVLVYNVMELHSHC-EIDAHQAPLAAIVLSSNGMYIATASEQG-----------  201 (342)
Q Consensus       138 ~~~~~~~~~~~~l~~~----~~~~~g~i~iwd~~~~~~~~-~~~~h~~~v~~i~~s~dg~~lat~s~dg-----------  201 (342)
                      +.+++++|++.++|++    |+ ..-.|+++|+.+++.+. .+..  .....++|++|++.|.....|.           
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~-e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~  203 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGS-DWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETS  203 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTC-SCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCC
T ss_pred             ecceEecCCCCEEEEEeccccC-chheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCcccccccc
Confidence            4456778888888854    33 45689999999998653 2322  1235688999999887654321           


Q ss_pred             ----cEEEEEEcCCCee--EEEeccCcCceeEEEEEEecCCCcccEEEEE
Q 019349          202 ----TIIRVFLVSEATK--SYSFRRGTYPSTIFSLSFGQSMQFQDILVAT  245 (342)
Q Consensus       202 ----~~irlwd~~~~~~--~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~  245 (342)
                          ..+..|.+.+...  ...+.......-+..+..++|++   +|+..
T Consensus       204 ~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~---~l~i~  250 (430)
T d1qfma1         204 TNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGR---YVLLS  250 (430)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSC---EEEEE
T ss_pred             cCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcc---eeeEE
Confidence                1245666665432  12222222223366778899998   66543

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.54  E-value=6.9  Score=32.57  Aligned_cols=110  Identities=11%  Similarity=0.102  Sum_probs=73.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEcCCcEEEEeCC-----------CCcEEEEEeeCCEEEEEEcCCCCeEEEEcCCCCCCCCC
Q 019349            6 SSYPVFFVSFNQDNSGFALSTKDGFKIFDSS-----------TGRLCYERAVGAFSIVEMLYSSSLLAIVGAGEQPSLSP   74 (342)
Q Consensus         6 ~~~~V~~l~fs~d~~~la~g~~~g~~v~d~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~d   74 (342)
                      +....+-++.++...++++|+.++++|..++           ............+..+++  +.+.+++..+        
T Consensus        35 P~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~ip~v~~vaf--s~d~l~v~~~--------  104 (381)
T d1xipa_          35 PFASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPDVIFVCF--HGDQVLVSTR--------  104 (381)
T ss_dssp             CSSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTTEEEEEE--ETTEEEEEES--------
T ss_pred             CccccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccCCCCeEEEEe--eCCEEEEEeC--------
Confidence            3456778899998888989998999887531           112223333345555544  4556655543        


Q ss_pred             CeEEEEECCCCcEEEE-EecCCceEEEEEcCCeEEEEE-CCeEEEEECCCCce
Q 019349           75 RRLCLFNTTTGTALRE-LNFLTSILAVRLNKKRLVIVL-REKTYIYDANTLAI  125 (342)
Q Consensus        75 ~~i~iwd~~~~~~~~~-~~~~~~v~~i~~~~~~~~~~~-d~~i~i~d~~~~~~  125 (342)
                      +.+..++...-..... -....++.++.+++....++. ++.+.++++.+++.
T Consensus       105 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~~~~~l~~~~~  157 (381)
T d1xipa_         105 NALYSLDLEELSEFRTVTSFEKPVFQLKNVNNTLVILNSVNDLSALDLRTKST  157 (381)
T ss_dssp             SEEEEEESSSTTCEEEEEECSSCEEEEEECSSEEEEEETTSEEEEEETTTCCE
T ss_pred             CCEEEEEeeccccccccccccccccceecCCceeEEEecCCCEEEEEeccCcc
Confidence            5677788765443333 334567899999998877777 78999999988754

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=87.23  E-value=6.8  Score=32.21  Aligned_cols=144  Identities=15%  Similarity=0.176  Sum_probs=78.7

Q ss_pred             eEEEEECC--eEEEEECCCCceeeEEeCC-CCCceE-EEEeeCCCccEEEEe-CCC-CccEEEEEEccC-CceeEEEecc
Q 019349          106 RLVIVLRE--KTYIYDANTLAILDTIDTV-PNLKGL-CAFSPSLNACFLAVP-AST-TKGSVLVYNVME-LHSHCEIDAH  178 (342)
Q Consensus       106 ~~~~~~d~--~i~i~d~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~l~~~-~~~-~~g~i~iwd~~~-~~~~~~~~~h  178 (342)
                      .+++++++  -+++||+. |+.++.+... .+...+ ..+.......-++++ .++ ...+|.+|.+.. ...+..+...
T Consensus        41 SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~  119 (353)
T d1h6la_          41 SKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDP  119 (353)
T ss_dssp             CEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCS
T ss_pred             cEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccc
Confidence            46666643  59999995 6666665321 111111 122333333334333 331 124688887752 2233333221


Q ss_pred             -------cCCeeEEEE--CCC-CC-EEEEEeCCCcEEEEEEc---CCCe----eEEEeccCcCceeEEEEEEecCCCccc
Q 019349          179 -------QAPLAAIVL--SSN-GM-YIATASEQGTIIRVFLV---SEAT----KSYSFRRGTYPSTIFSLSFGQSMQFQD  240 (342)
Q Consensus       179 -------~~~v~~i~~--s~d-g~-~lat~s~dg~~irlwd~---~~~~----~~~~~~~~~~~~~v~~l~fs~d~~~~~  240 (342)
                             ...+..+|+  ++. |. +++....+|.+ ..|.+   ..+.    ++.+|..   +..+..+++.++..   
T Consensus       120 ~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v-~q~~l~~~~~g~v~~~lvr~f~~---~~q~EGCVvDde~~---  192 (353)
T d1h6la_         120 NRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEF-EQYELNADKNGYISGKKVRAFKM---NSQTEGMAADDEYG---  192 (353)
T ss_dssp             SSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEE-EEEEEEECTTSSEEEEEEEEEEC---SSCEEEEEEETTTT---
T ss_pred             ccccccccCcceEEEEEecCCCCeEEEEEEcCCceE-EEEEEEcCCCCceeeEeeeccCC---CCccceEEEeCCCC---
Confidence                   123566776  664 54 45556667764 56655   3332    3444432   34588899999887   


Q ss_pred             EEEEEeCCCcEEEEecC
Q 019349          241 ILVATSSSGSLHVFSPG  257 (342)
Q Consensus       241 ~l~~~s~dg~i~vwd~~  257 (342)
                      .|..+-++.-|..++++
T Consensus       193 ~LyisEE~~Giw~~~a~  209 (353)
T d1h6la_         193 SLYIAEEDEAIWKFSAE  209 (353)
T ss_dssp             EEEEEETTTEEEEEESS
T ss_pred             cEEEecCccceEEEEec
Confidence            89999888766666554

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.94  E-value=9.4  Score=31.68  Aligned_cols=136  Identities=10%  Similarity=0.116  Sum_probs=80.5

Q ss_pred             ceEEEEEcCCeEEEEECCeEEEEECCCCceeeEEeCCCCCceEEEEeeCCCccEEEEeCCCCccEEEEEEccCCceeEEE
Q 019349           96 SILAVRLNKKRLVIVLREKTYIYDANTLAILDTIDTVPNLKGLCAFSPSLNACFLAVPASTTKGSVLVYNVMELHSHCEI  175 (342)
Q Consensus        96 ~v~~i~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~iwd~~~~~~~~~~  175 (342)
                      .|..++++.+.+++..++.+..++..............  ..+..+.+.|....+  ..  .+|.+.++++..++.....
T Consensus        88 ~v~~vafs~d~l~v~~~~~l~~~~~~~l~~~~~~~~~~--~~~~~~~~~p~~~~l--~~--~~~~~~~~~l~~~~~~~~~  161 (381)
T d1xipa_          88 DVIFVCFHGDQVLVSTRNALYSLDLEELSEFRTVTSFE--KPVFQLKNVNNTLVI--LN--SVNDLSALDLRTKSTKQLA  161 (381)
T ss_dssp             TEEEEEEETTEEEEEESSEEEEEESSSTTCEEEEEECS--SCEEEEEECSSEEEE--EE--TTSEEEEEETTTCCEEEEE
T ss_pred             CeEEEEeeCCEEEEEeCCCEEEEEeecccccccccccc--ccccceecCCceeEE--Ee--cCCCEEEEEeccCcccccc
Confidence            68889999999888888999999987754443333222  246677777764333  33  3688999999887643221


Q ss_pred             e-----cccCCeeEEEECCCCCEEEEEeCCCcEEEE-EEcCCCeeEEEecc-CcCceeEEEEEEecCCCcccEEEEE
Q 019349          176 D-----AHQAPLAAIVLSSNGMYIATASEQGTIIRV-FLVSEATKSYSFRR-GTYPSTIFSLSFGQSMQFQDILVAT  245 (342)
Q Consensus       176 ~-----~h~~~v~~i~~s~dg~~lat~s~dg~~irl-wd~~~~~~~~~~~~-~~~~~~v~~l~fs~d~~~~~~l~~~  245 (342)
                      .     .-.+.+.+++|++.|..++++.  |+...+ -++.....   +.. .....++.+|.|-.+..   ++++-
T Consensus       162 ~~v~~~~~~~~~~~v~ws~kgkq~v~~~--g~~~q~k~~i~~~~~---~~~p~~~~~~v~sI~WL~~~~---F~vvy  230 (381)
T d1xipa_         162 QNVTSFDVTNSQLAVLLKDRSFQSFAWR--NGEMEKQFEFSLPSE---LEELPVEEYSPLSVTILSPQD---FLAVF  230 (381)
T ss_dssp             ESEEEEEECSSEEEEEETTSCEEEEEEE--TTEEEEEEEECCCHH---HHTSCTTTSEEEEEEESSSSE---EEEEE
T ss_pred             CCcceEEecCCceEEEEeCCcEEEEEeC--CCceeeccCCCCccc---cCCCcCCCcceeEEEEecCce---EEEEE
Confidence            1     1125577778887777777764  322221 11111110   110 01233588888887766   56554

>d1q47a_ b.69.12.1 (A:) Semaphorin 3a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Sema domain
family: Sema domain
domain: Semaphorin 3a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=81.09  E-value=4  Score=35.48  Aligned_cols=70  Identities=21%  Similarity=0.302  Sum_probs=45.2

Q ss_pred             CeeEEEEC----CCC--CEEEEEeCCCcEEEEEEcCCCe-------eEEEeccCcCceeEEEEEEecCCCcccEEEEEeC
Q 019349          181 PLAAIVLS----SNG--MYIATASEQGTIIRVFLVSEAT-------KSYSFRRGTYPSTIFSLSFGQSMQFQDILVATSS  247 (342)
Q Consensus       181 ~v~~i~~s----~dg--~~lat~s~dg~~irlwd~~~~~-------~~~~~~~~~~~~~v~~l~fs~d~~~~~~l~~~s~  247 (342)
                      ..++|+.+    +++  ..+..|.++|+++|+.-...+.       .+.++.......+|..|.|+++++   +|.+++.
T Consensus       405 ~~T~iav~~v~~~~~~~tV~flGT~~G~l~Kv~~~~~~~~~~~~~~~iee~~~~~~~~pI~~l~l~~~~~---~Lyv~t~  481 (495)
T d1q47a_         405 QFTQIVVDRVDAEDGQYDVMFIGTDVGTVLKVVSVPKETWHDLEEVLLEEMTVFREPTTISAMELSTKQQ---QLYIGST  481 (495)
T ss_dssp             CEEEEEEEEEECSSCEEEEEEEEETTSCEEEEECC-----------CCEEECCSSSCCCCCEEEEETTTT---EEEEEBS
T ss_pred             eeEEEEEEEEeccCCcEEEEEEEcCCCEEEEEEEcCCCCccccceeEEEEEeecCCCCceEEEEEeCCCC---EEEEEeC
Confidence            35666653    223  4577788999998886443222       234443333455688999999998   8999998


Q ss_pred             CCcEEE
Q 019349          248 SGSLHV  253 (342)
Q Consensus       248 dg~i~v  253 (342)
                      ++-++|
T Consensus       482 ~~V~~v  487 (495)
T d1q47a_         482 AGVAQL  487 (495)
T ss_dssp             SCEEEE
T ss_pred             CeEEEE
Confidence            876654