Citrus Sinensis ID: 019351

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQKPNGSFVQ
Secondary Structure (PSIPRED)
ccccccEEEEcccHHHHHHHHHHHHcccEEcccccccccccccEEccHHHHHHHHcccccccccccccccccccccccEEEccccEEEEEEccccEEEEEEEEEccEEEEEccccccccccHHHHHccccccHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHccccccccccEEEEcccccHHHHHHHHHHHHcccEEEccccccEEEEcccccEEEEEEccEEEEEcEEEEcccccccccccccEEEEEEEEEcccccccccccEEEEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEcccHHHHHHHHHHHHccccEEEEccccccHHHcEEccHHHHHHHccccccccHHHccHHHccEEccccEEEcccHHHHHHHHHcHHHHccEEEccEEEEEEccEEEEccccHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHcccccccccEHHHHHHHccccHHHHHHHHHHcccccccHHHHcEHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHHHcccccEccccccEEEEcEccEEEEEEEccEEEEEEEEEEcHHHcHHHEEEEEEEEEEEEEEccccccccccccEEEEEcHHHHcccccEEEEEEEccc
Coil and Loop (DISEMBL)
MDEEYDVIVLGTGLKECIlsgllsvdglkvlhmdrndyyggesssLNLIQLWKRfrgneqppahlgssrdynvdmiPKFIIANGALVRVLIHTDVTKYLYfkavdgsfvynkgkvhkvpatdmealksPLMGIFEKRRARKFFIYVqdydendpkthegmdltRVTTRELIAkyglddntiDFIGHALalhrddrylnepaldTVKRMKLYAESIARfqggspyiyplyglgelPQAFARLSAVYggtymlnkpeckvefdeegkvvgvtsegetakckkvvcdpsylpnkvrkVGRVARAIAImshpipntndshsvqvilpqkqlgrrsdiqkpngsfvq
Flexible Loop (DISEMBL)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKvhkvpatdmealksPLMGIFEKRRARKFFIYvqdydendpkthegmdltrVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVgvtsegetakckkvvcdpsylpnkvrKVGRVARAIAIMShpipntndshsVQVILPqkqlgrrsdiqkpngsfvq
Low Complexity Region (SEG)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQKPNGSFVQ
Disordered region (IsUnstruct)
****YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRG***********RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN****HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPI*********************************
Disordered Region (DISOPRED)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIP***DSHSVQVILPQKQLGRRSDIQKPNGSFV*
Disordered Region (DISEMBL)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQKPNGSFVQ
Disordered Region (DISPRO)
*DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQKPNGSF**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQKPNGSFVQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
P60028	447	Rab GDP dissociation inhi	yes	no	0.967	0.740	0.637	1e-125
P31150	447	Rab GDP dissociation inhi	yes	no	0.967	0.740	0.637	1e-125
P50398	447	Rab GDP dissociation inhi	yes	no	0.967	0.740	0.634	1e-125
Q7YQM0	447	Rab GDP dissociation inhi	N/A	no	0.967	0.740	0.634	1e-125
P21856	447	Rab GDP dissociation inhi	yes	no	0.967	0.740	0.634	1e-125
Q8HXX7	447	Rab GDP dissociation inhi	N/A	no	0.967	0.740	0.634	1e-125
O97555	447	Rab GDP dissociation inhi	yes	no	0.967	0.740	0.631	1e-125
P50396	447	Rab GDP dissociation inhi	yes	no	0.967	0.740	0.631	1e-125
P50397	445	Rab GDP dissociation inhi	no	no	0.967	0.743	0.613	1e-123
Q6Q7J2	445	Rab GDP dissociation inhi	no	no	0.967	0.743	0.610	1e-122

>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1

 Score =  449 bits (1156), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.
Pan troglodytes (taxid: 9598)

>sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2

 Score =  449 bits (1156), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1

 Score =  449 bits (1154), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Rattus norvegicus (taxid: 10116)

>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Pongo pygmaeus (taxid: 9600)

>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Macaca fascicularis (taxid: 9541)

>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1

 Score =  448 bits (1152), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSF+Y  GK++KVP
Sbjct: 61  GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Canis familiaris (taxid: 9615)

>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3

 Score =  447 bits (1150), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 211/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++V+K G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|P50397|GDIB_BOVIN Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3

 Score =  440 bits (1132), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 205/334 (61%), Positives = 271/334 (81%), Gaps = 3/334 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
           M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF+   
Sbjct: 1   MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK  +GSFVY  GK++KVP
Sbjct: 61  APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D  + + RE+  K+ L  +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGIDPKKTSMREVYKKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V 
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IMQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RVICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1

 Score =  436 bits (1122), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 204/334 (61%), Positives = 269/334 (80%), Gaps = 3/334 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNE 59
           M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF    
Sbjct: 1   MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK  +GSFVY  GK++KVP
Sbjct: 61  APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D  +   RE+  K+ L  +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P  +T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP  ++   + GKV+GV SEGE A+CK+++CDPSY+ ++V KVG+V 
Sbjct: 240 RLSAIYGGTYMLNKPIEEI-IVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVI 298

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           R I I+SHPI NT+D++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RVICILSHPIKNTSDANSCQIIIPQNQVNRKSDI 332

Regulates the GDP/GTP exchange reaction of most Rab proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
2501850	444	GDP dissociation inhibitor [Nicotiana ta	0.973	0.75	0.942	0.0
255545283	444	protein with unknown function [Ricinus c	0.973	0.75	0.942	0.0
224815412	444	Rab GDP dissociation inhibitor [Nicotian	0.973	0.75	0.936	0.0
82623395	444	GDP dissociation inhibitor 1-like [Solan	0.973	0.75	0.936	0.0
224117826	444	predicted protein [Populus trichocarpa]	0.973	0.75	0.933	0.0
156972239	444	GDP-dissociation inhibitor [Lupinus albu	0.973	0.75	0.933	0.0
58465454	444	GDP dissociation inhibitor 1 [Solanum ch	0.973	0.75	0.930	0.0
225434259	444	PREDICTED: rab GDP dissociation inhibito	0.973	0.75	0.927	0.0
3175990	444	GDP dissociation inhibitor [Cicer arieti	0.973	0.75	0.921	0.0
449442357	444	PREDICTED: rab GDP dissociation inhibito	0.973	0.75	0.921	0.0

>gi|2501850|gb|AAB80717.1| GDP dissociation inhibitor [Nicotiana tabacum]

 Score =  664 bits (1713), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/333 (94%), Positives = 330/333 (99%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL+QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLVQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRD+NVDMIPKFI+ANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA
Sbjct: 61  PPAELGSSRDFNVDMIPKFIMANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY+E+DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYNESDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL+EPA DTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHRDDRYLDEPAQDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYLPNKVRKVG+VAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKVCGVTSEGETAKCKKVVCDPSYLPNKVRKVGKVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           AIAIMSHPIPNTNDSHSVQ+ILPQKQLGR+SD+
Sbjct: 301 AIAIMSHPIPNTNDSHSVQIILPQKQLGRKSDM 333

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545283|ref|XP_002513702.1| protein with unknown function [Ricinus communis] gi|223547153|gb|EEF48649.1| protein with unknown function [Ricinus communis]

 Score =  660 bits (1703), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 314/333 (94%), Positives = 327/333 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMD+NDYYGGES+SLNL QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDKNDYYGGESASLNLNQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPAHLGSSRDYNVDMIPKF++ANG LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA
Sbjct: 61  PPAHLGSSRDYNVDMIPKFMMANGNLVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY+E+DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYNESDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL+EPALDTV RMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 MDFIGHALALHRDDRYLDEPALDTVMRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK RKV RVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKARKVSRVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           AIAIMSHPIPNTNDSHS QVILPQKQLGRRSD+
Sbjct: 301 AIAIMSHPIPNTNDSHSAQVILPQKQLGRRSDM 333

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224815412|gb|ACN65853.1| Rab GDP dissociation inhibitor [Nicotiana benthamiana]

 Score =  660 bits (1702), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/333 (93%), Positives = 329/333 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL+QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLVQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRD+NVDMIPKFI+ANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKV KVPA
Sbjct: 61  PPAELGSSRDFNVDMIPKFIMANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVRKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY+E+DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYNESDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL+EPA DTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHRDDRYLDEPAQDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYLP+KVRKVG+VAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKVCGVTSEGETAKCKKVVCDPSYLPSKVRKVGKVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           AIAIMSHPIPNTNDSHSVQ+ILPQKQLGR+SD+
Sbjct: 301 AIAIMSHPIPNTNDSHSVQIILPQKQLGRKSDM 333

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82623395|gb|ABB87112.1| GDP dissociation inhibitor 1-like [Solanum tuberosum]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/333 (93%), Positives = 328/333 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL+QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLVQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRDYNVDMIPKFI+ANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA
Sbjct: 61  PPAQLGSSRDYNVDMIPKFIMANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY E+DPKTHEGMDLTRVT RELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYKESDPKTHEGMDLTRVTARELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL++PALDTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHRDDRYLDKPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYML+KPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYL NKVRKVG+VAR
Sbjct: 241 LSAVYGGTYMLSKPECKVEFDEEGKVCGVTSEGETAKCKKVVCDPSYLNNKVRKVGKVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           AIAIMSHPIPNTNDSHSVQ+ILPQKQLGR+SD+
Sbjct: 301 AIAIMSHPIPNTNDSHSVQIILPQKQLGRKSDL 333

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224117826|ref|XP_002331641.1| predicted protein [Populus trichocarpa] gi|118484203|gb|ABK93982.1| unknown [Populus trichocarpa] gi|118487234|gb|ABK95445.1| unknown [Populus trichocarpa] gi|222874037|gb|EEF11168.1| predicted protein [Populus trichocarpa]

 Score =  657 bits (1696), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/333 (93%), Positives = 329/333 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNLIQLWKRFRGN++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESASLNLIQLWKRFRGNDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPAHLGSSRDYNVDMIPKF++ANG LVRVLIHTDVTKYLYFKAVDG +V+NKGKVHKVPA
Sbjct: 61  PPAHLGSSRDYNVDMIPKFMMANGNLVRVLIHTDVTKYLYFKAVDGGYVFNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMG+FEKRRARKFFIYVQ+Y+++DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGLFEKRRARKFFIYVQNYEDSDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHALALHRDDRYLNEPALDTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEF+EEGKV GVTSEGETAKCKKVVCDPSYLPNK RKVGRVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFNEEGKVAGVTSEGETAKCKKVVCDPSYLPNKARKVGRVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           AIAIMSHPIP+T++SHSVQVILPQKQLGRRSD+
Sbjct: 301 AIAIMSHPIPSTDESHSVQVILPQKQLGRRSDM 333

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|156972239|gb|ABU98948.1| GDP-dissociation inhibitor [Lupinus albus]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 311/333 (93%), Positives = 325/333 (97%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGL ECILSGLLSVDGLKVLHMDRNDYYGGES+SLNLIQLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLXECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLIQLWKRFRGDDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PP HLGSSRDYNVDM+PKF++ANG LVRVLIHTDVTKYLYFKAVDGSFV+NKGKVHKVPA
Sbjct: 61  PPPHLGSSRDYNVDMVPKFMMANGTLVRVLIHTDVTKYLYFKAVDGSFVFNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDYDE+DPKTHEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDESDPKTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHA+ALHRDDRYLNEPALDTVKRMKLYAES+ARFQGGS YIYPLYGLGELPQ F R
Sbjct: 181 IDFIGHAIALHRDDRYLNEPALDTVKRMKLYAESLARFQGGSSYIYPLYGLGELPQGFVR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKV+FDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVKFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           AI IMSHPIPNTNDSHS QVILPQKQLGR+SD+
Sbjct: 301 AIVIMSHPIPNTNDSHSAQVILPQKQLGRKSDM 333

Source: Lupinus albus

Species: Lupinus albus

Genus: Lupinus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58465454|gb|AAW78520.1| GDP dissociation inhibitor 1 [Solanum chilense]

 Score =  656 bits (1692), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/333 (93%), Positives = 328/333 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL+QLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLVQLWKRFRGSDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRDYNVDMIPKFI+ANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA
Sbjct: 61  PPAQLGSSRDYNVDMIPKFIMANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMGIFEKRRARKFFIYVQDY E+DPKTHEGMDLTRVT RELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYKESDPKTHEGMDLTRVTARELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYL++PALDTVKRMKLYAES+ARFQGGSPYIYPLYGLGELP+AFAR
Sbjct: 181 VDFIGHALALHRDDRYLDKPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPRAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKV+FDEEGKV GVTSEGETAKCKKVVCDPSYL NKVRKVG+VAR
Sbjct: 241 LSAVYGGTYMLNKPECKVDFDEEGKVCGVTSEGETAKCKKVVCDPSYLNNKVRKVGKVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           A+AIMSHPIPNTNDSHSVQ+ILPQKQLGR+SD+
Sbjct: 301 AVAIMSHPIPNTNDSHSVQIILPQKQLGRKSDL 333

Source: Solanum chilense

Species: Solanum chilense

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434259|ref|XP_002280606.1| PREDICTED: rab GDP dissociation inhibitor alpha [Vitis vinifera] gi|147840053|emb|CAN70679.1| hypothetical protein VITISV_044153 [Vitis vinifera] gi|296084382|emb|CBI24770.3| unnamed protein product [Vitis vinifera]

 Score =  655 bits (1689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/333 (92%), Positives = 327/333 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRF+GN++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFKGNDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPA LGSSRDYNVDMIPKF++ANG LVRVLIHTDVTKYLYFKAVDGS+V+NKGKVHKVPA
Sbjct: 61  PPASLGSSRDYNVDMIPKFMMANGTLVRVLIHTDVTKYLYFKAVDGSYVFNKGKVHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
            D+EALKSPLMG+FEKRRARKFFI+VQDYDENDP+THEGMDLTRVTTRELIAKYGLDDNT
Sbjct: 121 NDVEALKSPLMGLFEKRRARKFFIFVQDYDENDPRTHEGMDLTRVTTRELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHA+ALHRDD YLNEPA+DTVKRMKLY+ESIARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHAIALHRDDCYLNEPAIDTVKRMKLYSESIARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEFDEEGK VGVTSEGETA+CKKVVCDPSYLPNKVRKVGRVAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDEEGKAVGVTSEGETARCKKVVCDPSYLPNKVRKVGRVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           AI IMSHPIPNT+DSHSVQVILPQKQLGR+SD+
Sbjct: 301 AICIMSHPIPNTSDSHSVQVILPQKQLGRKSDM 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3175990|emb|CAA06731.1| GDP dissociation inhibitor [Cicer arietinum]

 Score =  651 bits (1680), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/333 (92%), Positives = 328/333 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNLIQLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLIQLWKRFRGDDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PP HLGSS+DYN+DM PKFI+ANG LVRVLIHTDVTKYLYFKAVDGSFV+NKGKVHKVP+
Sbjct: 61  PPPHLGSSKDYNIDMNPKFIMANGMLVRVLIHTDVTKYLYFKAVDGSFVFNKGKVHKVPS 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
            DMEALKSPLMGIFEKRRARKFFIYVQDY+E+DPKTH+GMDLTRVTT+ELIAK+GLDDNT
Sbjct: 121 NDMEALKSPLMGIFEKRRARKFFIYVQDYNESDPKTHDGMDLTRVTTKELIAKFGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           +DFIGHALALHRDDRYLNEPALDTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 VDFIGHALALHRDDRYLNEPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEFD EGKV+GV+SEGETAKCKKVVCDPSYLPNKVRKVG+VAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDGEGKVLGVSSEGETAKCKKVVCDPSYLPNKVRKVGKVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           AIAIMSHPIPNTNDSHSVQVILPQKQLGR+SD+
Sbjct: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRKSDM 333

Source: Cicer arietinum

Species: Cicer arietinum

Genus: Cicer

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442357|ref|XP_004138948.1| PREDICTED: rab GDP dissociation inhibitor alpha-like [Cucumis sativus] gi|449522606|ref|XP_004168317.1| PREDICTED: rab GDP dissociation inhibitor alpha-like [Cucumis sativus]

 Score =  651 bits (1679), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 307/333 (92%), Positives = 327/333 (98%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRG+++
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGDDK 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
           PPAHLGSSRDYNVDMIPKF++ANG LVRVLIHTDVTKYL FKAVDGS+VYNKGK+HKVPA
Sbjct: 61  PPAHLGSSRDYNVDMIPKFMMANGTLVRVLIHTDVTKYLSFKAVDGSYVYNKGKIHKVPA 120

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
           TDMEALKSPLMG+FEKRRARKFFI+VQDYDE++PKTHEGMDL RVTT+ELIAKYGLDDNT
Sbjct: 121 TDMEALKSPLMGLFEKRRARKFFIFVQDYDESNPKTHEGMDLARVTTKELIAKYGLDDNT 180

Query: 181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
           IDFIGHALALHRDDRYL+ PALDTVKRMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct: 181 IDFIGHALALHRDDRYLDLPALDTVKRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query: 241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
           LSAVYGGTYMLNKPECKVEFD+EGKV+GVTSEGETAKCKKVVCDPSYL NKVRKVG+VAR
Sbjct: 241 LSAVYGGTYMLNKPECKVEFDDEGKVIGVTSEGETAKCKKVVCDPSYLSNKVRKVGKVAR 300

Query: 301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           AIAIMSH IPNTNDSHSVQ+I+PQKQLGRRSD+
Sbjct: 301 AIAIMSHTIPNTNDSHSVQIIIPQKQLGRRSDM 333

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2051839	445	GDI1 "guanosine nucleotide dip	0.973	0.748	0.861	3.5e-155
TAIR|locus:2080527	444	GDI2 "RAB GDP dissociation inh	0.973	0.75	0.849	9.2e-155
TAIR|locus:2144741	445	GDI "RAB GDP-dissociation inhi	0.973	0.748	0.837	9.2e-155
DICTYBASE|DDB_G0268034	454	DDB_G0268034 "Rab GDP dissocia	0.967	0.729	0.651	2.6e-118
UNIPROTKB|P31150	447	GDI1 "Rab GDP dissociation inh	0.967	0.740	0.637	1.9e-115
UNIPROTKB|P60028	447	GDI1 "Rab GDP dissociation inh	0.967	0.740	0.637	1.9e-115
UNIPROTKB|Q7YQM0	447	GDI1 "Rab GDP dissociation inh	0.967	0.740	0.634	2.4e-115
UNIPROTKB|Q8HXX7	447	GDI1 "Rab GDP dissociation inh	0.967	0.740	0.634	2.4e-115
RGD|2676	447	Gdi1 "GDP dissociation inhibit	0.967	0.740	0.634	2.4e-115
UNIPROTKB|P21856	447	GDI1 "Rab GDP dissociation inh	0.967	0.740	0.634	3.1e-115

TAIR|locus:2051839 GDI1 "guanosine nucleotide diphosphate dissociation inhibitor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1513 (537.7 bits), Expect = 3.5e-155, P = 3.5e-155
 Identities = 287/333 (86%), Positives = 313/333 (93%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             MDEEY+VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES+SLNL QLWK+FRG E+
Sbjct:     1 MDEEYEVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEK 60

Query:    61 PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
              PAHLGSSRDYNVDM+PKF++ANG LVRVLIHTDVTKYL FKAVDGS+V+ +GKV KVPA
Sbjct:    61 APAHLGSSRDYNVDMMPKFMMANGKLVRVLIHTDVTKYLSFKAVDGSYVFVQGKVQKVPA 120

Query:   121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
             T MEALKSPLMGIFEKRRA KFF YVQ+YDE DPKTH+GMDL RVTT++LIAK+GL ++T
Sbjct:   121 TPMEALKSPLMGIFEKRRAGKFFSYVQEYDEKDPKTHDGMDLRRVTTKDLIAKFGLKEDT 180

Query:   181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
             IDFIGHA+ALH +D +L++PA DTV RMKLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct:   181 IDFIGHAVALHCNDNHLHQPAYDTVMRMKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query:   241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
             LSAVYGGTYMLNKPECKVEFDEEGKV GVTSEGETAKCKKVVCDPSYL NKVRK+GRVAR
Sbjct:   241 LSAVYGGTYMLNKPECKVEFDEEGKVSGVTSEGETAKCKKVVCDPSYLTNKVRKIGRVAR 300

Query:   301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
             AIAIMSHPIPNTNDS SVQVILPQKQLGR+SD+
Sbjct:   301 AIAIMSHPIPNTNDSQSVQVILPQKQLGRKSDM 333

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA;IGI

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006623 "protein targeting to vacuole" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0048227 "plasma membrane to endosome transport" evidence=IGI

TAIR|locus:2080527 GDI2 "RAB GDP dissociation inhibitor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1509 (536.3 bits), Expect = 9.2e-155, P = 9.2e-155
 Identities = 283/333 (84%), Positives = 311/333 (93%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             MDEEY+VIVLGTGLKECILSGLLSVDG+KVLHMDRNDYYGGES+SLNL QLWK+FRG E+
Sbjct:     1 MDEEYEVIVLGTGLKECILSGLLSVDGVKVLHMDRNDYYGGESTSLNLNQLWKKFRGEEK 60

Query:    61 PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
              P HLG+SRDYNVDM+PKF++ NG LVR LIHTDVTKYL FKAVDGS+V+ KGKV KVPA
Sbjct:    61 APEHLGASRDYNVDMMPKFMMGNGKLVRTLIHTDVTKYLSFKAVDGSYVFVKGKVQKVPA 120

Query:   121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
             T MEALKS LMGIFEKRRA KFF +VQ+YDE DPKTH+GMDLTRVTT+ELIAKYGLD NT
Sbjct:   121 TPMEALKSSLMGIFEKRRAGKFFSFVQEYDEKDPKTHDGMDLTRVTTKELIAKYGLDGNT 180

Query:   181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
             IDFIGHA+ALH +D++L++PA DTV RMKLYAES+ARFQG SPYIYPLYGLGELPQAFAR
Sbjct:   181 IDFIGHAVALHTNDQHLDQPAFDTVMRMKLYAESLARFQGTSPYIYPLYGLGELPQAFAR 240

Query:   241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
             LSAVYGGTYMLNKPECKVEFDE GKV+GVTSEGETAKCKK+VCDPSYLPNKVRK+GRVAR
Sbjct:   241 LSAVYGGTYMLNKPECKVEFDEGGKVIGVTSEGETAKCKKIVCDPSYLPNKVRKIGRVAR 300

Query:   301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
             AIAIMSHPIPNTNDSHSVQVI+PQKQL R+SD+
Sbjct:   301 AIAIMSHPIPNTNDSHSVQVIIPQKQLARKSDM 333

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0048046 "apoplast" evidence=IDA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016192 "vesicle-mediated transport" evidence=RCA

GO:0016926 "protein desumoylation" evidence=RCA

GO:0042732 "D-xylose metabolic process" evidence=RCA

GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA

GO:0051049 "regulation of transport" evidence=RCA

TAIR|locus:2144741 GDI "RAB GDP-dissociation inhibitor" [Arabidopsis thaliana (taxid:3702)]

 Score = 1509 (536.3 bits), Expect = 9.2e-155, P = 9.2e-155
 Identities = 279/333 (83%), Positives = 312/333 (93%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNL QLWKRFRG++ 
Sbjct:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLTQLWKRFRGSDT 60

Query:    61 PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
             P  +LG+SR+YNVDMIPKFI+ANG LV+ LIHTDVTKYL FKAVDGSFVY KGK++KVPA
Sbjct:    61 PEENLGASREYNVDMIPKFIMANGLLVQTLIHTDVTKYLNFKAVDGSFVYKKGKIYKVPA 120

Query:   121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNT 180
             TD+EALKSPLMG+FEKRRARKFFIYVQDYDE DPK+HEG+DL++VT RE+I+KYGL+D+T
Sbjct:   121 TDVEALKSPLMGLFEKRRARKFFIYVQDYDEKDPKSHEGLDLSKVTAREIISKYGLEDDT 180

Query:   181 IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR 240
             IDFIGHALALH DD YL++PA+D VKR+KLYAES+ARFQGGSPYIYPLYGLGELPQAFAR
Sbjct:   181 IDFIGHALALHNDDDYLDQPAIDFVKRIKLYAESLARFQGGSPYIYPLYGLGELPQAFAR 240

Query:   241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVAR 300
             LSAVYGGTYMLNKPECKVEFD  GK +GVTS GETAKCKKVVCDPSYL  KV+KVG+V R
Sbjct:   241 LSAVYGGTYMLNKPECKVEFDGSGKAIGVTSAGETAKCKKVVCDPSYLSEKVKKVGKVTR 300

Query:   301 AIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
             A+ IMSHPIP+TND+HSVQ+ILPQKQLGR+SD+
Sbjct:   301 AVCIMSHPIPDTNDAHSVQIILPQKQLGRKSDM 333

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0015031 "protein transport" evidence=IEA;ISS

GO:0048046 "apoplast" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

DICTYBASE|DDB_G0268034 DDB_G0268034 "Rab GDP dissociation inhibitor alpha" [Dictyostelium discoideum (taxid:44689)]

 Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
 Identities = 219/336 (65%), Positives = 278/336 (82%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             MDE YDVIVLGTGLKECI+SGLLSVDG KVLHMDRN YYGGES+SLN+ QLW++  G E+
Sbjct:     1 MDEHYDVIVLGTGLKECIISGLLSVDGKKVLHMDRNGYYGGESASLNMNQLWEKSHGKEK 60

Query:    61 P-PAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
               P  LGSSRDYNVD+IPKFI+++G LV++L+HTDVT+YL FK VDGS+VY+ GK++KVP
Sbjct:    61 KAPETLGSSRDYNVDLIPKFILSSGLLVKMLLHTDVTRYLDFKVVDGSYVYSSGKINKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRE-LIAKYGLDD 178
             +TD EAL S L+G+ +K   RKFFI+VQ+Y+EN+P TH+G++L ++TT + L  KYGL +
Sbjct:   121 STDTEALTSSLVGLLDKLPLRKFFIFVQNYEENNPATHDGLNL-KITTMDALFKKYGLRE 179

Query:   179 NTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAF 238
             N +DFIGHALAL+ DD YL +PA DT+ RMKLYA+S+AR+   SPYIYPLYGLGELPQAF
Sbjct:   180 NIVDFIGHALALYLDDSYLQQPAHDTIMRMKLYADSLARYSK-SPYIYPLYGLGELPQAF 238

Query:   239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRV 298
             ARLSA+YGGTYMLNKP   + FDEE K++ VTSEGET  C K+VCDPSY PNKV+K G++
Sbjct:   239 ARLSAIYGGTYMLNKPIENIVFDEEKKIIKVTSEGETVTCDKIVCDPSYFPNKVQKKGKI 298

Query:   299 ARAIAIMSHPIPNTNDS-HSVQVILPQKQLGRRSDI 333
              R+I I++ PIP+ +    S+Q+I+PQKQ+ R+SD+
Sbjct:   299 IRSICILNGPIPSADKKFESLQIIIPQKQVKRQSDM 334

GO:0015031 "protein transport" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P31150 GDI1 "Rab GDP dissociation inhibitor alpha" [Homo sapiens (taxid:9606)]

 Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
 Identities = 213/334 (63%), Positives = 273/334 (81%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query:   300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
             R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

GO:0015031 "protein transport" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

GO:0051592 "response to calcium ion" evidence=IEA

GO:0030496 "midbody" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050771 "negative regulation of axonogenesis" evidence=ISS

GO:0005092 "GDP-dissociation inhibitor activity" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=TAS

GO:0051056 "regulation of small GTPase mediated signal transduction" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|P60028 GDI1 "Rab GDP dissociation inhibitor alpha" [Pan troglodytes (taxid:9598)]

 Score = 1138 (405.7 bits), Expect = 1.9e-115, P = 1.9e-115
 Identities = 213/334 (63%), Positives = 273/334 (81%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+TV R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query:   300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
             R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

GO:0050771 "negative regulation of axonogenesis" evidence=ISS

UNIPROTKB|Q7YQM0 GDI1 "Rab GDP dissociation inhibitor alpha" [Pongo pygmaeus (taxid:9600)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 212/334 (63%), Positives = 273/334 (81%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query:   300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
             R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

GO:0050771 "negative regulation of axonogenesis" evidence=ISS

UNIPROTKB|Q8HXX7 GDI1 "Rab GDP dissociation inhibitor alpha" [Macaca fascicularis (taxid:9541)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 212/334 (63%), Positives = 273/334 (81%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query:   300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
             R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

GO:0050771 "negative regulation of axonogenesis" evidence=ISS

RGD|2676 Gdi1 "GDP dissociation inhibitor 1" [Rattus norvegicus (taxid:10116)]

 Score = 1137 (405.3 bits), Expect = 2.4e-115, P = 2.4e-115
 Identities = 212/334 (63%), Positives = 273/334 (81%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVI 298

Query:   300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
             R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=IDA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0015031 "protein transport" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IPI

GO:0030496 "midbody" evidence=IEA;ISO

GO:0043005 "neuron projection" evidence=IDA

GO:0043234 "protein complex" evidence=IDA

GO:0050771 "negative regulation of axonogenesis" evidence=IDA

GO:0051592 "response to calcium ion" evidence=IDA

UNIPROTKB|P21856 GDI1 "Rab GDP dissociation inhibitor alpha" [Bos taurus (taxid:9913)]

 Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
 Identities = 212/334 (63%), Positives = 273/334 (81%)

Query:     1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
             MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct:     1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60

Query:    60 QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
              PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct:    61 GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120

Query:   120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
             +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct:   121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180

Query:   180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
              IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct:   181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query:   240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
             RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct:   240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 298

Query:   300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
             R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct:   299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

GO:0007264 "small GTPase mediated signal transduction" evidence=ISS

GO:0005093 "Rab GDP-dissociation inhibitor activity" evidence=ISS;IDA

GO:0050771 "negative regulation of axonogenesis" evidence=ISS

GO:0005829 "cytosol" evidence=IDA

GO:0030496 "midbody" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P50398	GDIA_RAT	No assigned EC number	0.6347	0.9678	0.7404	yes	no
P50396	GDIA_MOUSE	No assigned EC number	0.6317	0.9678	0.7404	yes	no
P31150	GDIA_HUMAN	No assigned EC number	0.6377	0.9678	0.7404	yes	no
P39958	GDI1_YEAST	No assigned EC number	0.5457	0.9707	0.7361	yes	no
O97555	GDIA_CANFA	No assigned EC number	0.6317	0.9678	0.7404	yes	no
Q10305	GDI1_SCHPO	No assigned EC number	0.5915	0.9707	0.7545	yes	no
P21856	GDIA_BOVIN	No assigned EC number	0.6347	0.9678	0.7404	yes	no
P60028	GDIA_PANTR	No assigned EC number	0.6377	0.9678	0.7404	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1700012 SubName- Full=Putative uncharacterized protein; (445 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
pfam00996	439	pfam00996, GDI, GDP dissociation inhibitor	0.0
PTZ00363	443	PTZ00363, PTZ00363, rab-GDP dissociation inhibitor	0.0
COG5044	434	COG5044, MRS6, RAB proteins geranylgeranyltransfer	1e-116

>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor

 Score =  625 bits (1615), Expect = 0.0
 Identities = 246/334 (73%), Positives = 293/334 (87%), Gaps = 2/334 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE- 59
           MDEEYDVIVLGTGLKECILSGLLSVDG KVLH+DRNDYYGGES+SL+L QL+ RFRG E 
Sbjct: 1   MDEEYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLSLEQLYARFRGGEE 60

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
           +PP+ LG SRD+NVD+IPKF++ANG LV++LIHTDVT+YL FKAV+GS+VY  GK+HKVP
Sbjct: 61  KPPSKLGRSRDWNVDLIPKFLMANGELVKLLIHTDVTRYLEFKAVEGSYVYKGGKIHKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           A +MEAL SPLMGIFEKRR RKF  YVQDYDE+DPKTH+G+D  + T  E+  K+GLD+N
Sbjct: 121 ANEMEALSSPLMGIFEKRRFRKFLTYVQDYDEDDPKTHDGLDPRKRTMLEVYKKFGLDEN 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
           TIDFIGHALAL+RDD YLN+PAL TV+R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 TIDFIGHALALYRDDDYLNQPALPTVERIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP  ++ +DE GKVVGV S GE A+ K+V+CDPSY P+KVRKVG+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDEIVYDENGKVVGVKSGGEVARAKQVICDPSYFPDKVRKVGQVI 299

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           RAI I+SHPIPNTND+ SVQ+I+PQ Q+GR+SDI
Sbjct: 300 RAICILSHPIPNTNDAGSVQIIIPQNQVGRKSDI 333

Length = 439

>gnl|CDD|185577 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor; Provisional

 Score =  591 bits (1527), Expect = 0.0
 Identities = 223/335 (66%), Positives = 281/335 (83%), Gaps = 3/335 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           MDE YDVIV GTGLKECILSGLLSV+G KVLHMDRN YYGGES+SLNL QL+K+F+  E 
Sbjct: 1   MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGET 60

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVP 119
           PP  LG +RD+NVD+IPKFI+A+G LV++L+HTDVT+YL FK +DGS+VY  +GK+HKVP
Sbjct: 61  PPESLGRNRDWNVDLIPKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVP 120

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           ATDMEAL SPLMG FEK R + F  YV +YDENDP+TH+G++L  +T  +L  K+GL+DN
Sbjct: 121 ATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKGLNLKTMTMAQLYKKFGLEDN 180

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
           TIDF+GHA+AL+ +D YLN+PA++TV R+KLY +S++R+ G SP+IYPLYGLG LPQAF+
Sbjct: 181 TIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGGLPQAFS 239

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGV-TSEGETAKCKKVVCDPSYLPNKVRKVGRV 298
           RL A+YGGTYMLN P  +V FDE GKV GV +  GE AKCK V+CDPSY P+KV+KVG+V
Sbjct: 240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVKKVGKV 299

Query: 299 ARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
            R I I++HPIPNTN+++S Q+I+PQKQLGR++DI
Sbjct: 300 IRCICILNHPIPNTNNANSCQIIIPQKQLGRKNDI 334

Length = 443

>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

 Score =  342 bits (879), Expect = e-116
 Identities = 159/340 (46%), Positives = 210/340 (61%), Gaps = 13/340 (3%)

Query: 1   MDEE--YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN 58
           MDEE  YDVI+LGTGL+E ILS  LS DG  VLH+D+NDYYG  S+SL L QL K F   
Sbjct: 1   MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDEC 60

Query: 59  EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKV 118
           E+ P+  G  RD N+D+IPKF+ AN  L+++LI T VT+YL FK + GSF+Y  GK++KV
Sbjct: 61  EKRPSKGGGDRDLNIDLIPKFLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKV 120

Query: 119 PATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDD 178
           P  + E   SPL+ +FEKRR  +F  +V +Y E    T + +  ++ T   L  K+GL  
Sbjct: 121 PYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQELYESKDTMEFLFEKFGLSG 179

Query: 179 NTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAF 238
            T +FIGH +AL  D   L+ PA + ++R+  Y  S   + G SPY+YP YGLGEL Q F
Sbjct: 180 ATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGELSQGF 235

Query: 239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG-- 296
           AR SAVYGGTYMLN+     E +E   V  V     T K  K++  P+Y     + VG  
Sbjct: 236 ARSSAVYGGTYMLNQA--IDEINETKDVETVDKGSLTQKAGKIISSPTYFREDSKSVGQF 293

Query: 297 -RVARAIAIM-SHPIPNTNDSHSVQVILPQKQLGRRSDIQ 334
            R+ RAI I+  HP+P T    S+Q+I P   L R++DIQ
Sbjct: 294 YRIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKRKNDIQ 333

Length = 434

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	100.0
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	100.0
KOG1439	440	consensus RAB proteins geranylgeranyltransferase c	100.0
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	100.0
KOG4405	547	consensus GDP dissociation inhibitor [Signal trans	100.0
PRK07233	434	hypothetical protein; Provisional	99.91
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.91
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.91
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.9
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.9
PLN02576	496	protoporphyrinogen oxidase	99.9
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.9
PRK07208	479	hypothetical protein; Provisional	99.9
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.89
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.88
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.88
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.86
PLN02612	567	phytoene desaturase	99.85
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.85
PLN02487	569	zeta-carotene desaturase	99.84
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.82
PLN02268	435	probable polyamine oxidase	99.8
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.75
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.73
PLN02568	539	polyamine oxidase	99.73
PLN02529	738	lysine-specific histone demethylase 1	99.73
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.72
PLN02676	487	polyamine oxidase	99.7
KOG4254	561	consensus Phytoene desaturase [Coenzyme transport	99.7
PLN03000	881	amine oxidase	99.66
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.64
KOG0029	501	consensus Amine oxidase [Secondary metabolites bio	99.62
KOG1276	491	consensus Protoporphyrinogen oxidase [Coenzyme tra	99.61
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	99.56
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	99.55
COG2081	408	Predicted flavoproteins [General function predicti	99.54
PRK11728	393	hydroxyglutarate oxidase; Provisional	99.54
COG0579	429	Predicted dehydrogenase [General function predicti	99.53
KOG0685	498	consensus Flavin-containing amine oxidase [Coenzym	99.53
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	99.52
COG3349	485	Uncharacterized conserved protein [Function unknow	99.51
PLN02976	1713	amine oxidase	99.51
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	99.5
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	99.5
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.46
PTZ00383	497	malate:quinone oxidoreductase; Provisional	99.46
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	99.44
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.44
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	99.44
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	99.44
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	99.44
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.43
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	99.43
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	99.42
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	99.42
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.4
PRK08274	466	tricarballylate dehydrogenase; Validated	99.4
KOG2820	399	consensus FAD-dependent oxidoreductase [General fu	99.38
PRK10157	428	putative oxidoreductase FixC; Provisional	99.38
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	99.35
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	99.34
PRK10015	429	oxidoreductase; Provisional	99.34
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	99.33
PLN02464	627	glycerol-3-phosphate dehydrogenase	99.33
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	99.33
PRK05257	494	malate:quinone oxidoreductase; Validated	99.32
KOG2844	856	consensus Dimethylglycine dehydrogenase precursor	99.3
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	99.29
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	99.29
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	99.28
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	99.28
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	99.27
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	99.26
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.22
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.22
PRK13339	497	malate:quinone oxidoreductase; Reviewed	99.22
PRK07121	492	hypothetical protein; Validated	99.21
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	99.21
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	99.2
PRK06847	375	hypothetical protein; Provisional	99.19
PRK06175	433	L-aspartate oxidase; Provisional	99.19
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	99.14
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	99.14
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.14
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	99.14
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	99.13
PRK08163	396	salicylate hydroxylase; Provisional	99.11
PRK12842	574	putative succinate dehydrogenase; Reviewed	99.11
PRK07190	487	hypothetical protein; Provisional	99.11
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	99.09
TIGR00275	400	flavoprotein, HI0933 family. The model when search	99.09
PRK12839	572	hypothetical protein; Provisional	99.09
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	99.09
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	99.08
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	99.08
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	99.07
PRK06185	407	hypothetical protein; Provisional	99.07
PRK07804	541	L-aspartate oxidase; Provisional	99.07
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	99.05
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	99.05
PRK06184	502	hypothetical protein; Provisional	99.05
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	99.04
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	99.04
PRK08013	400	oxidoreductase; Provisional	99.04
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	99.03
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.03
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	99.03
PLN02661	357	Putative thiazole synthesis	99.02
PRK09126	392	hypothetical protein; Provisional	99.02
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	99.02
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	99.02
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	99.02
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	99.01
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	99.01
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	99.01
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	99.01
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	99.01
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	99.01
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	99.01
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	99.01
PRK07045	388	putative monooxygenase; Reviewed	99.01
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	99.01
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	99.0
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	99.0
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	99.0
PRK02106	560	choline dehydrogenase; Validated	98.99
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	98.99
PRK06834	488	hypothetical protein; Provisional	98.99
PRK07395	553	L-aspartate oxidase; Provisional	98.98
PRK08401	466	L-aspartate oxidase; Provisional	98.98
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	98.96
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	98.95
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	98.95
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	98.94
PLN02697	529	lycopene epsilon cyclase	98.94
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	98.94
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	98.94
PRK07236	386	hypothetical protein; Provisional	98.94
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	98.92
PLN02463	447	lycopene beta cyclase	98.92
PRK07588	391	hypothetical protein; Provisional	98.92
PRK08071	510	L-aspartate oxidase; Provisional	98.91
PLN02985	514	squalene monooxygenase	98.91
PRK08244	493	hypothetical protein; Provisional	98.9
PRK08275	554	putative oxidoreductase; Provisional	98.89
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	98.89
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	98.89
PRK08132	547	FAD-dependent oxidoreductase; Provisional	98.89
PRK07512	513	L-aspartate oxidase; Provisional	98.88
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	98.88
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	98.88
KOG0042	680	consensus Glycerol-3-phosphate dehydrogenase [Ener	98.88
PRK06753	373	hypothetical protein; Provisional	98.88
PLN02815	594	L-aspartate oxidase	98.87
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	98.87
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.87
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	98.86
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	98.85
PRK06126	545	hypothetical protein; Provisional	98.84
PRK05868	372	hypothetical protein; Validated	98.82
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	98.82
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	98.81
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	98.81
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	98.78
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	98.77
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	98.76
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	98.76
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	98.76
KOG2853	509	consensus Possible oxidoreductase [General functio	98.74
PRK06475	400	salicylate hydroxylase; Provisional	98.74
PRK09077	536	L-aspartate oxidase; Provisional	98.74
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	98.73
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	98.73
KOG1298	509	consensus Squalene monooxygenase [Lipid transport	98.73
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	98.73
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	98.73
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	98.7
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	98.69
KOG2404	477	consensus Fumarate reductase, flavoprotein subunit	98.68
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	98.68
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	98.67
PRK06116	450	glutathione reductase; Validated	98.67
PRK06996	398	hypothetical protein; Provisional	98.66
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	98.65
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	98.65
COG4716	587	Myosin-crossreactive antigen [Function unknown]	98.62
TIGR02352	337	thiamin_ThiO glycine oxidase ThiO. This family con	98.62
PRK06370	463	mercuric reductase; Validated	98.61
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	98.61
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	98.6
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	98.6
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	98.59
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	98.59
PRK09897	534	hypothetical protein; Provisional	98.57
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	98.57
PLN02785	587	Protein HOTHEAD	98.57
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	98.56
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	98.55
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	98.55
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	98.55
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	98.53
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	98.52
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	98.52
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	98.51
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	98.5
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	98.49
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	98.48
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	98.48
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	98.48
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	98.47
KOG2852	380	consensus Possible oxidoreductase [General functio	98.46
KOG2665	453	consensus Predicted FAD-dependent oxidoreductase [	98.46
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	98.45
KOG1399	448	consensus Flavin-containing monooxygenase [Seconda	98.44
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	98.43
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	98.42
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	98.42
PTZ00052	499	thioredoxin reductase; Provisional	98.42
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	98.42
PRK14694	468	putative mercuric reductase; Provisional	98.41
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	98.4
PRK13748	561	putative mercuric reductase; Provisional	98.4
PRK12779	944	putative bifunctional glutamate synthase subunit b	98.38
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	98.37
TIGR02053	463	MerA mercuric reductase. This model represents the	98.36
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	98.35
PRK12831	464	putative oxidoreductase; Provisional	98.35
PTZ00058	561	glutathione reductase; Provisional	98.34
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	98.32
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	98.31
PRK14727	479	putative mercuric reductase; Provisional	98.29
KOG2614	420	consensus Kynurenine 3-monooxygenase and related f	98.28
PRK11445	351	putative oxidoreductase; Provisional	98.28
PRK08294	634	phenol 2-monooxygenase; Provisional	98.28
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	98.28
PRK07538	413	hypothetical protein; Provisional	98.28
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	98.28
KOG2415	621	consensus Electron transfer flavoprotein ubiquinon	98.28
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	98.27
PRK09564	444	coenzyme A disulfide reductase; Reviewed	98.26
PLN02507	499	glutathione reductase	98.26
TIGR03377	516	glycerol3P_GlpA glycerol-3-phosphate dehydrogenase	98.25
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	98.25
PTZ00367	567	squalene epoxidase; Provisional	98.24
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	98.23
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	98.22
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	98.22
PRK10262	321	thioredoxin reductase; Provisional	98.22
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	98.22
PLN02852	491	ferredoxin-NADP+ reductase	98.21
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	98.21
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	98.2
PLN02546	558	glutathione reductase	98.19
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	98.17
COG3573	552	Predicted oxidoreductase [General function predict	98.17
PTZ00153	659	lipoamide dehydrogenase; Provisional	98.16
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	98.15
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	98.14
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	98.12
KOG1238	623	consensus Glucose dehydrogenase/choline dehydrogen	98.12
PRK12814	652	putative NADPH-dependent glutamate synthase small	98.09
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	98.08
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	98.08
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	98.06
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	98.04
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	98.03
PTZ00188	506	adrenodoxin reductase; Provisional	98.02
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	98.02
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	97.96
PRK06567	1028	putative bifunctional glutamate synthase subunit b	97.96
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	97.95
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	97.94
PRK12770	352	putative glutamate synthase subunit beta; Provisio	97.94
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	97.92
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	97.92
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	97.85
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	97.84
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	97.82
KOG0399	2142	consensus Glutamate synthase [Amino acid transport	97.82
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	97.8
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.79
PRK13984	604	putative oxidoreductase; Provisional	97.79
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	97.77
PRK07846	451	mycothione reductase; Reviewed	97.72
KOG2960	328	consensus Protein involved in thiamine biosynthesi	97.7
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	97.69
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	97.63
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.59
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.59
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	97.56
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.53
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	97.43
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	97.35
PRK07845	466	flavoprotein disulfide reductase; Reviewed	97.3
KOG4716	503	consensus Thioredoxin reductase [Posttranslational	97.27
PRK13512	438	coenzyme A disulfide reductase; Provisional	97.26
KOG1800	468	consensus Ferredoxin/adrenodoxin reductase [Nucleo	97.23
KOG2311	679	consensus NAD/FAD-utilizing protein possibly invol	97.2
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	97.19
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	97.1
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	97.07
KOG0405	478	consensus Pyridine nucleotide-disulphide oxidoredu	96.92
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	96.88
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	96.88
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	96.74
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	96.65
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	96.64
KOG3855	481	consensus Monooxygenase involved in coenzyme Q (ub	96.64
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	96.55
PRK14989	847	nitrite reductase subunit NirD; Provisional	96.36
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	96.34
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	96.34
KOG0404	322	consensus Thioredoxin reductase [Posttranslational	96.28
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.28
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.21
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.17
TIGR03862	376	flavo_PP4765 uncharacterized flavoprotein, PP_4765	96.07
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	96.04
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	95.97
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	95.97
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.95
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	95.92
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	95.84
TIGR02053	463	MerA mercuric reductase. This model represents the	95.75
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.75
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	95.73
KOG3923	342	consensus D-aspartate oxidase [Amino acid transpor	95.7
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	95.67
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	95.65
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	95.62
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	95.62
PRK07846	451	mycothione reductase; Reviewed	95.6
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	95.58
PRK06370	463	mercuric reductase; Validated	95.57
KOG2755	334	consensus Oxidoreductase [General function predict	95.55
COG0569	225	TrkA K+ transport systems, NAD-binding component [	95.55
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.48
PRK13512	438	coenzyme A disulfide reductase; Provisional	95.48
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.47
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	95.44
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	95.44
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.43
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	95.43
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	95.43
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	95.42
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.39
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	95.37
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	95.3
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	95.2
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	95.17
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	95.16
PRK04148	134	hypothetical protein; Provisional	95.12
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	95.09
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.07
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	94.99
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.99
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	94.97
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	94.94
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	94.91
PRK06116	450	glutathione reductase; Validated	94.89
TIGR01816	565	sdhA_forward succinate dehydrogenase, flavoprotein	94.88
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.87
PTZ00153	659	lipoamide dehydrogenase; Provisional	94.85
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	94.85
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	94.84
PTZ00058	561	glutathione reductase; Provisional	94.76
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	94.75
PRK09564	444	coenzyme A disulfide reductase; Reviewed	94.74
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	94.66
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	94.64
PRK05675	570	sdhA succinate dehydrogenase flavoprotein subunit;	94.58
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	94.51
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	94.45
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	94.42
PRK10262	321	thioredoxin reductase; Provisional	94.42
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	94.34
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	94.32
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	94.27
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	94.25
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	94.22
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	94.16
PLN02546	558	glutathione reductase	94.14
PRK12831	464	putative oxidoreductase; Provisional	94.11
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	94.07
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	94.05
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	94.02
KOG1336	478	consensus Monodehydroascorbate/ferredoxin reductas	93.99
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	93.98
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	93.95
PRK12770	352	putative glutamate synthase subunit beta; Provisio	93.9
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	93.89
PTZ00082	321	L-lactate dehydrogenase; Provisional	93.84
KOG3851	446	consensus Sulfide:quinone oxidoreductase/flavo-bin	93.73
PLN02353	473	probable UDP-glucose 6-dehydrogenase	93.71
PRK07417	279	arogenate dehydrogenase; Reviewed	93.7
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.67
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	93.66
PRK06719	157	precorrin-2 dehydrogenase; Validated	93.66
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	93.66
PLN02507	499	glutathione reductase	93.62
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	93.58
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	93.48
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	93.48
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.43
PRK14694	468	putative mercuric reductase; Provisional	93.37
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	93.36
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	93.27
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	93.27
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	93.22
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	93.21
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	93.19
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.14
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	93.13
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	93.12
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	93.09
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.09
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	93.07
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	93.05
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	93.02
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.01
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.0
PRK14727	479	putative mercuric reductase; Provisional	92.99
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	92.93
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	92.93
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	92.87
PRK06223	307	malate dehydrogenase; Reviewed	92.85
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	92.84
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	92.83
PRK15116	268	sulfur acceptor protein CsdL; Provisional	92.83
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	92.77
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	92.77
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	92.72
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	92.72
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	92.71
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.61
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	92.51
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	92.5
PRK11730	715	fadB multifunctional fatty acid oxidation complex	92.5
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	92.49
PRK13748	561	putative mercuric reductase; Provisional	92.47
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	92.37
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	92.33
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	92.3
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	92.25
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	92.22
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	92.17
PRK14989	847	nitrite reductase subunit NirD; Provisional	92.14
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	92.13
PRK08306	296	dipicolinate synthase subunit A; Reviewed	92.05
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	91.98
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	91.97
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	91.93
PTZ00052	499	thioredoxin reductase; Provisional	91.91
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	91.86
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.85
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	91.84
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	91.8
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	91.77
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	91.76
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	91.74
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	91.59
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	91.55
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	91.55
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	91.54
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	91.43
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	91.42
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	91.39
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	91.35
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	91.21
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	91.11
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	91.05
PRK05442	326	malate dehydrogenase; Provisional	91.03
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	90.98
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.96
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.95
PTZ00117	319	malate dehydrogenase; Provisional	90.94
KOG1335	506	consensus Dihydrolipoamide dehydrogenase [Energy p	90.85
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	90.77
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	90.76
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	90.7
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	90.64
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	90.63
PRK09496	453	trkA potassium transporter peripheral membrane com	90.54
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	90.47
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	90.42
PRK12779	944	putative bifunctional glutamate synthase subunit b	90.4
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	90.38
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	90.37
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	90.35
PRK08328	231	hypothetical protein; Provisional	90.31
PLN02602	350	lactate dehydrogenase	90.28
PRK06849	389	hypothetical protein; Provisional	90.24
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	90.19
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	90.19
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	90.15
PRK03815	401	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.12
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	90.09
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	89.96
PRK10669	558	putative cation:proton antiport protein; Provision	89.84
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	89.82

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=100.00  E-value=3.6e-55  Score=395.13  Aligned_cols=336  Identities=61%  Similarity=1.042  Sum_probs=285.5

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCC-CCCCCCCCCcceeccCcch
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ-PPAHLGSSRDYNVDMIPKF   79 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~   79 (342)
                      |+++|||||+|+|+..+..|..|+++|++|+++|+++++||.++++++.++...|....+ .+..+|.++.|++|+.|++
T Consensus         1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKl   80 (438)
T PF00996_consen    1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKL   80 (438)
T ss_dssp             --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--B
T ss_pred             CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHh
Confidence            899999999999999999999999999999999999999999999999999888875422 2355688899999999999


Q ss_pred             hccccHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccc
Q 019351           80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (342)
Q Consensus        80 ~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
                      ++++|+|+++|+++++.+|+||+.+++.|+|.+++++++|.++.+.|++.++++++|+.+++|+.++..+.+..+..++.
T Consensus        81 l~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~  160 (438)
T PF00996_consen   81 LYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTHKG  160 (438)
T ss_dssp             EETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTT
T ss_pred             hhccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999998777777777


Q ss_pred             cCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHHH
Q 019351          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (342)
Q Consensus       160 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~  239 (342)
                      .+....++.+++++++++++.++++.+.+++...+.+...|+..++.++..|+.|+++| |.+||+||.+|.++|+++++
T Consensus       161 ~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~Slgry-G~sPfLyP~YG~GELpQ~Fc  239 (438)
T PF00996_consen  161 LDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRY-GKSPFLYPLYGLGELPQAFC  239 (438)
T ss_dssp             G-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCC-SSSSEEEETT-TTHHHHHHH
T ss_pred             cccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhcc-CCCCEEEEccCCccHHHHHH
Confidence            77788999999999999999999999999998877777778899999999999999999 98999999999999999999


Q ss_pred             HHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccccccceeEEEEEEecCCCCCCCCCCeEE
Q 019351          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQ  319 (342)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~  319 (342)
                      |.++..|+.+.++++|.+|..++++++.+|..+|++++|++||..++|.|+.+....++.|+++|+++|++++.+..+.+
T Consensus       240 Rl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~~v~~~~~V~RaI~Il~~pi~~t~~~~s~~  319 (438)
T PF00996_consen  240 RLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPEKVKKTGQVSRAICILDHPIPNTEDASSVQ  319 (438)
T ss_dssp             HHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGCGEEEEEEEEEEEEEESS-STTSTT-SSEE
T ss_pred             HHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcccccccceEEEEEEEEcCCCCCCCCCceEE
Confidence            99999999999999999998865788888988999999999999999999777666789999999999999988877888


Q ss_pred             EEecCCCCCCcCceEEee
Q 019351          320 VILPQKQLGRRSDIQKPN  337 (342)
Q Consensus       320 ~~~p~~~~~~~~~~~~~~  337 (342)
                      .++|+.+.+|+++||+--
T Consensus       320 IiiP~~~~~~~~dIyv~~  337 (438)
T PF00996_consen  320 IIIPQSQVGRKSDIYVLQ  337 (438)
T ss_dssp             EEE-GGGCTSSS-EEEEE
T ss_pred             EecCCcccCCCCCeEEEE
Confidence            999999999999999853

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=100.00  E-value=4.1e-53  Score=387.26  Aligned_cols=338  Identities=67%  Similarity=1.151  Sum_probs=306.7

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchh
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (342)
                      |+++|||||||+|++|+++|..|+++|++|+++|+++++||+++|++..+++..|..+...|..+|.++.|++|+.|+++
T Consensus         1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l   80 (443)
T PTZ00363          1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFI   80 (443)
T ss_pred             CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeee
Confidence            88899999999999999999999999999999999999999999999999888887766677888999999999999999


Q ss_pred             ccccHHHHHHhhcCCcceeeEEEcCceEEE-eCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccc
Q 019351           81 IANGALVRVLIHTDVTKYLYFKAVDGSFVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (342)
Q Consensus        81 ~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
                      ++.+.++++|..+++.+|++|+.+++.+++ .+|+++++|.++.+.|++.++++++|+.+++|+.++.++....++.+..
T Consensus        81 ~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~  160 (443)
T PTZ00363         81 MASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKG  160 (443)
T ss_pred             ecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhhcc
Confidence            999999999999999999999999999998 7999999999999999999999999999999999998887655555555


Q ss_pred             cCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHHH
Q 019351          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (342)
Q Consensus       160 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~  239 (342)
                      .+++..|+.+|++++++++..++++.+++++...+.+...|+..++.++..|..+++.| |.+++.||.||+++++++|+
T Consensus       161 ~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~-g~~p~~yp~gG~g~L~qal~  239 (443)
T PTZ00363        161 LNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRY-GKSPFIYPLYGLGGLPQAFS  239 (443)
T ss_pred             cCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhc-cCCcceeeCCCHHHHHHHHH
Confidence            55678999999999999999999999888887656666778889999999999999998 77889999999999999999


Q ss_pred             HHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCccccccceeEEEEEEecCCCCCCCCCCeE
Q 019351          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSV  318 (342)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~  318 (342)
                      +.++..|++|+++++|++|..++++++++|++ +|++++|++||+.++|+|+.++..+++.|+++|+++|++++.+..+.
T Consensus       240 r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~~~~~~~v~R~i~i~~~pi~~~~~~~~~  319 (443)
T PTZ00363        240 RLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVKKVGKVIRCICILNHPIPNTNNANSC  319 (443)
T ss_pred             HHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccccccccEEEEEEEEEcccccccCcCccE
Confidence            99999999999999999998874467777877 78899999999999999987766778999999999999998887788


Q ss_pred             EEEecCCCCCCcCceEEeeCc
Q 019351          319 QVILPQKQLGRRSDIQKPNGS  339 (342)
Q Consensus       319 ~~~~p~~~~~~~~~~~~~~~~  339 (342)
                      +.++|+++.+|+++||+---|
T Consensus       320 ~i~~P~~~~~~~~~i~v~~~s  340 (443)
T PTZ00363        320 QIIIPQKQLGRKNDIYIMLVS  340 (443)
T ss_pred             EEEECCcccCCCCCEEEEEec
Confidence            899999999999999975433

>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.7e-51  Score=352.20  Aligned_cols=338  Identities=67%  Similarity=1.115  Sum_probs=319.1

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCC-CCCCCCCCCCCcceeccCcch
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-EQPPAHLGSSRDYNVDMIPKF   79 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~   79 (342)
                      |+++|||+|+|+|+..+..+..|+..|.+|+++|+|+++||..+|.+..+++..|+.+ +.+|...|..+.|++|+.|++
T Consensus         1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~   80 (440)
T KOG1439|consen    1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKF   80 (440)
T ss_pred             CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHh
Confidence            8888999999999999999999999999999999999999999999999999999855 566778899999999999999


Q ss_pred             hccccHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccc
Q 019351           80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (342)
Q Consensus        80 ~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
                      ++.++.++++|+++++.+||+|+.++++++|.+|+++++|.++.+.+.+.++++++|+.+++|+.++..+.+..++.+..
T Consensus        81 lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~  160 (440)
T KOG1439|consen   81 LMANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQG  160 (440)
T ss_pred             hhccchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             cCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHHH
Q 019351          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (342)
Q Consensus       160 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~  239 (342)
                      ++..+.++.+++.++++..+.+++..+.++++..+.+.+.|+..++.++..|.+|++.| |.++++||.+|.++|+++++
T Consensus       161 ~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~y-g~~~ylyP~yGlgEL~QgFa  239 (440)
T KOG1439|consen  161 YDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARY-GKSPYLYPLYGLGELPQGFA  239 (440)
T ss_pred             cccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhc-CCCcceecccCcchhhHHHH
Confidence            77777899999999999999999999999998889999999999999999999999999 88889999999999999999


Q ss_pred             HHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccccccceeEEEEEEecCCCCCCCCCCeEE
Q 019351          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQ  319 (342)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~  319 (342)
                      |.++..|+++.+|.++.+|...+++++.++...++...++++|+-++|.|+.+++.+++.|.+||+.+|.+.+++.++.+
T Consensus       240 RlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dpSY~~~~~k~vg~viR~iCIl~hpi~~t~~~~S~q  319 (440)
T KOG1439|consen  240 RLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDPSYFPQKVKKVGQVIRAICILSHPIPNTNDAESAQ  319 (440)
T ss_pred             HHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecCccchHHHHhhhheeeeeEEecCCcCcCCccceee
Confidence            99999999999999999999854788888888888999999999999999888888899999999999999999999999


Q ss_pred             EEecCCCCCCcCceEEeeCc
Q 019351          320 VILPQKQLGRRSDIQKPNGS  339 (342)
Q Consensus       320 ~~~p~~~~~~~~~~~~~~~~  339 (342)
                      .++|+.+.+|++|||+.--|
T Consensus       320 iiipq~q~~rksdi~v~~~s  339 (440)
T KOG1439|consen  320 IIIPQFQVGRKSDIYVFGLS  339 (440)
T ss_pred             EEechhhhCCcccEEEEEec
Confidence            99999999999999986544

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-42  Score=294.56  Aligned_cols=328  Identities=48%  Similarity=0.801  Sum_probs=287.3

Q ss_pred             CCCc--ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcc
Q 019351            1 MDEE--YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPK   78 (342)
Q Consensus         1 m~~~--~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (342)
                      |++.  |||+|+|+|+..+..+..|+..|.+|+++|+++++|+..++.+..++...|...+..|...+..+.|++|+.|+
T Consensus         1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK   80 (434)
T COG5044           1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPK   80 (434)
T ss_pred             CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchh
Confidence            6654  99999999999999999999999999999999999999999999988888877666777788889999999999


Q ss_pred             hhccccHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccccc
Q 019351           79 FIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE  158 (342)
Q Consensus        79 ~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  158 (342)
                      +++.++.++++|++.++.+|++|+++.+++.|.+++++++|.++.+.+.+.++++++|+.+++|++++..+.+ ....++
T Consensus        81 ~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~-~~~~~~  159 (434)
T COG5044          81 FLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKSTLQ  159 (434)
T ss_pred             hhcccchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHh-hhhhch
Confidence            9999999999999999999999999999999999999999999999999999999999999999999988875 333333


Q ss_pred             ccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHH
Q 019351          159 GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAF  238 (342)
Q Consensus       159 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l  238 (342)
                      .+..++.+.....+.++++....+++.+.++++.+   .+-|++.+++++..|++|++.| |.+|++||++|.+++++++
T Consensus       160 ~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ld---l~~p~re~~erIl~Y~~Sf~~y-g~~pyLyp~YGl~El~QGF  235 (434)
T COG5044         160 ELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDY-GKSPYLYPRYGLGELSQGF  235 (434)
T ss_pred             hhhhcccHHHHHHHHHccCcchhhhhhhhhhhhcc---ccCCchHHHHHHHHHHHhhccc-CCCcceeeccCchhhhHHH
Confidence            33222334444567899999999999998887654   4568899999999999999999 9999999999999999999


Q ss_pred             HHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccccccc---eeEEEEEEec-CCCCCCCC
Q 019351          239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG---RVARAIAIMS-HPIPNTND  314 (342)
Q Consensus       239 ~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~~~~---~~~~~~~i~~-~~l~~~~~  314 (342)
                      +|.+...|+.+.+|+++.++... +. |..|..++.+..|.+||....+.+...+..+   ++.|+.|+.. +|.+.+..
T Consensus       236 aRssav~GgtymLn~~i~ein~t-k~-v~~v~~~~~~~ka~KiI~~~~~~~~~~~~~~q~yriiRa~Ci~~~h~~~~~~~  313 (434)
T COG5044         236 ARSSAVYGGTYMLNQAIDEINET-KD-VETVDKGSLTQKAGKIISSPTYFREDSKSVGQFYRIIRAICILLVHPVPFTTG  313 (434)
T ss_pred             HHhhhccCceeecCcchhhhccc-cc-eeeeecCcceeecCcccCCcccccccccccchhhhhhHhhhhhhcCccccccc
Confidence            99999999999999999999765 33 4456667889999999999998876544433   7888888887 89888878


Q ss_pred             CCeEEEEecCCCCCCcCceEE
Q 019351          315 SHSVQVILPQKQLGRRSDIQK  335 (342)
Q Consensus       315 ~~~~~~~~p~~~~~~~~~~~~  335 (342)
                      .++.+.++|+.+.+|+++||+
T Consensus       314 ~ds~~iif~~~~lk~~~~i~v  334 (434)
T COG5044         314 LDSLQIIFPPFSLKRKNDIQV  334 (434)
T ss_pred             cccceeeechhhhcccCceEE
Confidence            888999999999999999975

>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.6e-36  Score=257.41  Aligned_cols=303  Identities=34%  Similarity=0.632  Sum_probs=253.1

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchH--------HHHHhc------------c-CCC--
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI--------QLWKRF------------R-GNE--   59 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~--------~~~~~~------------~-~~~--   59 (342)
                      ++|||||||+|+.....|...++.|.+|+++|.++++||.++++..+        .+...-            . ++.  
T Consensus         7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfSms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~~~   86 (547)
T KOG4405|consen    7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFSMSMIHEVEEAALTKKDHLSNEVEPPSALQKNNAPP   86 (547)
T ss_pred             hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCcccceeechhhhhhHHHHhhhhccccccCCCccccccCCCC
Confidence            46999999999999999999999999999999999999999999877        222110            0 000  


Q ss_pred             ----------------CCCC---C-------------CCCCCcceeccCcchhccccHHHHHHhhcCCcceeeEEEcCce
Q 019351           60 ----------------QPPA---H-------------LGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGS  107 (342)
Q Consensus        60 ----------------~~~~---~-------------~g~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~  107 (342)
                                      ++|.   +             ...++.|++|+.|+++++.|.++++|+++++.+|.||+.++..
T Consensus        87 t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLvpkilys~g~lI~lLikS~vsrYaEFK~V~r~  166 (547)
T KOG4405|consen   87 TPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLVPKILYSAGELIQLLIKSNVSRYAEFKNVDRI  166 (547)
T ss_pred             CCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhhhHHHhcccHHHHHHHHhcchhhhhhhccchh
Confidence                            0110   0             1235789999999999999999999999999999999999999


Q ss_pred             EEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCC-CCcccccccCCCCCcHHHHHHHcCCChhHHHHHHh
Q 019351          108 FVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE-NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGH  186 (342)
Q Consensus       108 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~  186 (342)
                      +...+|.+.++|+++.+.|+++-+++++|+.+|||+.++..|.. +.++..  .++...+|.|||+.++++++++.++.+
T Consensus       167 l~~~eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~--~~~~e~~F~EyL~~~rltp~lqs~vl~  244 (547)
T KOG4405|consen  167 LAFREGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEY--VEFRERPFSEYLKTMRLTPKLQSIVLH  244 (547)
T ss_pred             hcccCCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccCcHHH--HHhhcCcHHHHHHhcCCChhhHHHHHH
Confidence            99999999999999999999999999999999999999999852 222221  133567999999999999999999999


Q ss_pred             hhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcE
Q 019351          187 ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKV  266 (342)
Q Consensus       187 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~  266 (342)
                      .+++....   ...+..++.+.+.|+.++|+| |++||+||.+|.++|+++++|.|+..|+.+.++.+|+.|..+ ++..
T Consensus       245 aIaM~~~~---~~tt~eGm~at~~fl~slGrf-gntpfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivld-k~s~  319 (547)
T KOG4405|consen  245 AIAMLSES---QLTTIEGMDATKNFLTSLGRF-GNTPFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLD-KESL  319 (547)
T ss_pred             HHHhcCcc---cccHHHHHHHHHHHHHHhhcc-CCCcceeeccCCCcchHHHHHHHHHhcceEEeccchhheeec-cccc
Confidence            99887643   246788999999999999999 999999999999999999999999999999999999999877 3322


Q ss_pred             E---EEEeCCcEEEcCEEEECCCCCCccccc---cceeEEEEEEecCCCCCC
Q 019351          267 V---GVTSEGETAKCKKVVCDPSYLPNKVRK---VGRVARAIAIMSHPIPNT  312 (342)
Q Consensus       267 ~---~v~~~g~~~~a~~vI~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~  312 (342)
                      .   ++...|+++.|+++|++.+|.|+.+-.   ...+.|.+.|...++..+
T Consensus       320 ~~~~~l~s~g~ri~~k~~v~s~~y~pe~~~~~~~~K~Israv~itd~sil~~  371 (547)
T KOG4405|consen  320 DCKAILDSFGQRINAKNFVVSPSYAPEVVCSRVQLKQISRAVLITDPSILKT  371 (547)
T ss_pred             chhhhHhhhcchhcceeeeecCcccccccccccchhhcceeEEecCccccch
Confidence            2   344478999999999999999865422   235788888888887665

>PRK07233 hypothetical protein; Provisional

Probab=99.91  E-value=9.5e-23  Score=190.34  Aligned_cols=250  Identities=21%  Similarity=0.267  Sum_probs=154.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhc-ccc
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII-ANG   84 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~   84 (342)
                      +|+|||||++||+||++|+++|++|+|+|+++++||+++++..++                    +.+|.+.+.+. ...
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~g--------------------~~~d~g~~~~~~~~~   60 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFEFGG--------------------LPIERFYHHIFKSDE   60 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccCC--------------------cchhhhhhhhccccH
Confidence            599999999999999999999999999999999999999886532                    34444444443 234


Q ss_pred             HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccCCCC
Q 019351           85 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTR  164 (342)
Q Consensus        85 ~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (342)
                      ++.+++.+.++.....+.... ..++.+|..+.++ +....+....+++.++-........... .      .....++.
T Consensus        61 ~~~~l~~~lg~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~  131 (434)
T PRK07233         61 ALLELLDELGLEDKLRWRETK-TGYYVDGKLYPLG-TPLELLRFPHLSLIDKFRLGLLTLLARR-I------KDWRALDK  131 (434)
T ss_pred             HHHHHHHHcCCCCceeeccCc-eEEEECCeEecCC-CHHHHHcCCCCCHHHHHHhHHHHHhhhh-c------cccccccc
Confidence            566677776765544443322 2234466655443 2233333333343332211111111110 0      01113467


Q ss_pred             CcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccC-CCceEEeCCCCChHHHHHHHHHH
Q 019351          165 VTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQG-GSPYIYPLYGLGELPQAFARLSA  243 (342)
Q Consensus       165 ~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~gG~~~l~~~l~~~~~  243 (342)
                      .|+.+|+++...++....++.+.+...........+....+..+.....  ..... ...+.+++||++.+++.|++.++
T Consensus       132 ~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~--~~~~~~~~~~~~~~gG~~~l~~~l~~~l~  209 (434)
T PRK07233        132 VPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGN--RRYSLFGEKLGYLEGGFATLIDALAEAIE  209 (434)
T ss_pred             ccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhc--cccccCCceEeccCCCHHHHHHHHHHHHH
Confidence            9999999987433333445555443222222222233333333222110  00101 23477899999999999999999


Q ss_pred             HcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351          244 VYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       244 ~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~  287 (342)
                      +.|++|+++++|++|+.+ ++++.++..+++++.||+||+|++.
T Consensus       210 ~~g~~v~~~~~V~~i~~~-~~~~~~~~~~~~~~~ad~vI~a~p~  252 (434)
T PRK07233        210 ARGGEIRLGTPVTSVVID-GGGVTGVEVDGEEEDFDAVISTAPP  252 (434)
T ss_pred             hcCceEEeCCCeeEEEEc-CCceEEEEeCCceEECCEEEECCCH
Confidence            999999999999999987 6666666678889999999999864

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.91  E-value=1.2e-23  Score=190.66  Aligned_cols=247  Identities=14%  Similarity=0.223  Sum_probs=166.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   83 (342)
                      .|+|||||++||+|||+|++++  .+|+|||+.+++||...|+..+                    .|.+|.+++.|...
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~~~--------------------G~~~e~G~~~f~~~   61 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVKID--------------------GFLFERGPHHFLAR   61 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEeeC--------------------CEEEeechhheecc
Confidence            5999999999999999999999  9999999999999999999764                    38888888777666


Q ss_pred             -cHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHH-HHHHhhcCCCCcccccccC
Q 019351           84 -GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKF-FIYVQDYDENDPKTHEGMD  161 (342)
Q Consensus        84 -~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~-~~~~~~~~~~~~~~~~~~~  161 (342)
                       ..+++++.+.++++.+.+......|++.+|+++.+|....-.+.....+  ++..+.++ .++....        .+-.
T Consensus        62 ~~~~l~li~eLGled~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~--~~~~~~~~~~~~~~~~--------~~~~  131 (444)
T COG1232          62 KEEILDLIKELGLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLS--SEAGLARALQEFIRPK--------SWEP  131 (444)
T ss_pred             hHHHHHHHHHhCcHHhhccCCcccceEeeCCcEEECCccceeecCCcccc--chhHHHHHHHhhhccc--------CCCC
Confidence             6777888889998887776666678889999999996532222222221  12222222 2222210        0112


Q ss_pred             CCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHH----HHHHHhhc-----cccC----CCceEEe
Q 019351          162 LTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRM----KLYAESIA-----RFQG----GSPYIYP  227 (342)
Q Consensus       162 ~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~-----~~~g----~~~~~~~  227 (342)
                      .++.++.+|++++ +.+++.+ ++.+++.--..++...-++...+...    ..+-..+.     .+..    ...|.+.
T Consensus       132 ~~d~sv~~f~r~~-fG~ev~~~~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~  210 (444)
T COG1232         132 KQDISVGEFIRRR-FGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYL  210 (444)
T ss_pred             CCCcCHHHHHHHH-HhHHHHHHHHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccccc
Confidence            3689999999988 6666665 55665532111211111122111111    11111100     0000    1257788


Q ss_pred             CCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351          228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       228 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~  287 (342)
                      +||++.|+++|++.+...   |+++++|++|.++ ....+.+..+|.+++||.||+|+..
T Consensus       211 ~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~-~~~~~~~~~~g~~~~~D~VI~t~p~  266 (444)
T COG1232         211 RGGLQSLIEALAEKLEAK---IRTGTEVTKIDKK-GAGKTIVDVGGEKITADGVISTAPL  266 (444)
T ss_pred             CccHHHHHHHHHHHhhhc---eeecceeeEEEEc-CCccEEEEcCCceEEcceEEEcCCH
Confidence            999999999999987654   9999999999987 5555666778889999999999864

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.91  E-value=7.1e-23  Score=194.33  Aligned_cols=249  Identities=20%  Similarity=0.253  Sum_probs=155.0

Q ss_pred             EEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccccHH
Q 019351            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGAL   86 (342)
Q Consensus         7 ViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l   86 (342)
                      |||||||++||+||.+|+++|++|+|+|+++++||+++|++.+                    .|.+|.+++++...+.+
T Consensus         1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~~~--------------------G~~fD~G~~~~~~~~~~   60 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLEDD--------------------GFRFDTGPTVITMPEAL   60 (502)
T ss_pred             CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEecC--------------------CeEEecCCeEEccccHH
Confidence            6999999999999999999999999999999999999999764                    36677777766544434


Q ss_pred             HHHHhhcC--CcceeeEEEcCceEEE--eCCeEEecCCCcHHHhcCCCCCh--hhHHHHHHHHHHHhhcCC--------C
Q 019351           87 VRVLIHTD--VTKYLYFKAVDGSFVY--NKGKVHKVPATDMEALKSPLMGI--FEKRRARKFFIYVQDYDE--------N  152 (342)
Q Consensus        87 ~~~l~~~~--~~~~l~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~--~~k~~~~~~~~~~~~~~~--------~  152 (342)
                      .+++.+.+  +.+++++...+..+..  .+|..+.++.+ .+.+...+..+  -+...+.+|++.++....        .
T Consensus        61 ~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (502)
T TIGR02734        61 EELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDND-QEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYV  139 (502)
T ss_pred             HHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCC-HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            44444443  3455777766654433  35767777643 33222211111  112233334333322110        0


Q ss_pred             Cccc----------ccccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCC
Q 019351          153 DPKT----------HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGS  222 (342)
Q Consensus       153 ~~~~----------~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  222 (342)
                      ....          .........|+.+|++++.-++.++.++.. ............+...   .+..+.    .+  ..
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~-~~~~~g~~p~~~~~~~---~l~~~~----~~--~~  209 (502)
T TIGR02734       140 PFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSF-HALFLGGNPFRTPSIY---ALISAL----ER--EW  209 (502)
T ss_pred             CCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcc-cceeeccCcccchHHH---HHHHHH----Hh--hc
Confidence            0000          001123468889999887445555544432 1111111111111111   111111    11  23


Q ss_pred             ceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351          223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (342)
Q Consensus       223 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~  287 (342)
                      .++++.||+..++++|.+.++++|++|+++++|++|..+ ++++++|++ +|+++.||+||+|++.
T Consensus       210 g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~V~~~~g~~~~ad~VI~a~~~  274 (502)
T TIGR02734       210 GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETE-GGRATAVHLADGERLDADAVVSNADL  274 (502)
T ss_pred             eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEee-CCEEEEEEECCCCEEECCEEEECCcH
Confidence            345899999999999999999999999999999999887 677777877 5678999999999875

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.90  E-value=1.8e-22  Score=189.82  Aligned_cols=246  Identities=14%  Similarity=0.213  Sum_probs=153.6

Q ss_pred             cEEEECCCchHHHHHHhhhhC------CCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcch
Q 019351            6 DVIVLGTGLKECILSGLLSVD------GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~------G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   79 (342)
                      +|+|||||++||+||++|+++      |.+|+|||+++++||+++|.+..                    .+.+|++++.
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~~~--------------------g~~~e~G~~~   62 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVEEK--------------------DFIMESGADS   62 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEeeC--------------------CEEEecCcHH
Confidence            699999999999999999986      37999999999999999998643                    3667888877


Q ss_pred             hcccc-HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCc--------HHHhcCCCCChhhHHHHHHHHHHHhhcC
Q 019351           80 IIANG-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATD--------MEALKSPLMGIFEKRRARKFFIYVQDYD  150 (342)
Q Consensus        80 ~~~~~-~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~k~~~~~~~~~~~~~~  150 (342)
                      ++... .+.+++.+.++...+.+......+++.++....+|...        ...+...+++...+  +..+...+.   
T Consensus        63 i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~---  137 (463)
T PRK12416         63 IVARNEHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGK--IVALKDFIT---  137 (463)
T ss_pred             HhcCCHHHHHHHHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHH--HHhhhhhcc---
Confidence            76543 55677777777665443333456666677776665431        22233333332221  111111111   


Q ss_pred             CCCcccccccCCCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhc-----------c-
Q 019351          151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIA-----------R-  217 (342)
Q Consensus       151 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-  217 (342)
                      ..  ..    ..++.|+.+|+++. +.++..+ ++.+++......+....+....+..+..+....+           . 
T Consensus       138 ~~--~~----~~~~~sv~~~l~~~-~~~~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~  210 (463)
T PRK12416        138 KN--KE----FTKDTSLALFLESF-LGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQF  210 (463)
T ss_pred             CC--CC----CCCCCCHHHHHHHh-cCHHHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhcc
Confidence            00  00    12579999999987 5555543 4455442211122111222222222222211110           0 


Q ss_pred             -ccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351          218 -FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (342)
Q Consensus       218 -~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~  287 (342)
                       ..+...+.+++||++.++++|++.+..  ++|+++++|++|+.+ ++++ .|++ +|++++||+||+|+..
T Consensus       211 ~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~a~p~  278 (463)
T PRK12416        211 QSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQ-GDRY-EISFANHESIQADYVVLAAPH  278 (463)
T ss_pred             CCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEc-CCEE-EEEECCCCEEEeCEEEECCCH
Confidence             012345788999999999999987643  689999999999987 5554 4554 6778999999999853

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.90  E-value=5.6e-23  Score=192.89  Aligned_cols=249  Identities=21%  Similarity=0.321  Sum_probs=147.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   83 (342)
                      .+||||||||++||+||.+|+++|++|+||||++.+||+++++...+                    |.+|.++..+...
T Consensus         3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~~G--------------------f~fd~G~~~~~~~   62 (487)
T COG1233           3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFELDG--------------------FRFDTGPSWYLMP   62 (487)
T ss_pred             CccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEeccc--------------------eEeccCcceeecC
Confidence            48999999999999999999999999999999999999999998643                    5666666444333


Q ss_pred             c--HHHHHHhhcCCcce-eeEEEcCceEEE--eCCeEEecCCCcHHHhcCCCCCh--hhHHHHHHHHHHHhh-cC-----
Q 019351           84 G--ALVRVLIHTDVTKY-LYFKAVDGSFVY--NKGKVHKVPATDMEALKSPLMGI--FEKRRARKFFIYVQD-YD-----  150 (342)
Q Consensus        84 ~--~l~~~l~~~~~~~~-l~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~--~~k~~~~~~~~~~~~-~~-----  150 (342)
                      .  ++.+++.+  +..+ +++...+..+..  .+|....++.+ .+.+...+...  .+...+.+++..+.+ +.     
T Consensus        63 ~~~~~~~~l~~--l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  139 (487)
T COG1233          63 DPGPLFRELGN--LDADGLDLLPPDPAYRVFLPDGDAIDVYTD-LEATAELLESLEPGDGEALARYLRLLARLYELLAAL  139 (487)
T ss_pred             chHHHHHHhcc--CcccceeeeccCCceeeecCCCCEEEecCC-HHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhh
Confidence            2  34444432  4433 666555554433  24667766643 33322211111  111223333332222 11     


Q ss_pred             --CCCccccc-----------ccCCCCCcHHHHHHHcCCChhH-HHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhc
Q 019351          151 --ENDPKTHE-----------GMDLTRVTTRELIAKYGLDDNT-IDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIA  216 (342)
Q Consensus       151 --~~~~~~~~-----------~~~~~~~s~~~~l~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (342)
                        ........           .......+..+++..+ +..+. +..+......   . . ..|....  .+..++... 
T Consensus       140 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-f~~~~~r~~~~~~~~~---~-~-~~p~~~~--a~~~~~~~~-  210 (487)
T COG1233         140 LLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGR-FGSELLRALLAYSAVY---G-G-APPSTPP--ALYLLLSHL-  210 (487)
T ss_pred             cCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHH-hcCHHHHHHHHHHHHh---c-C-CCCCchh--HHHHHHHHh-
Confidence              00000000           0012334555555555 44333 3233222111   1 1 1221111  111111111 


Q ss_pred             cccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351          217 RFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (342)
Q Consensus       217 ~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~  287 (342)
                      .  ....+.+|+||++.++++|++.++++|++|+++++|++|..+ +++.+.+.+ ++..+++|.||++..+
T Consensus       211 ~--~~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~-~g~g~~~~~~~g~~~~ad~vv~~~~~  279 (487)
T COG1233         211 G--LSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVE-GGKGVGVRTSDGENIEADAVVSNADP  279 (487)
T ss_pred             c--ccCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEe-CCcceEEeccccceeccceeEecCch
Confidence            1  134467999999999999999999999999999999999987 776666666 4458999999998876

>PLN02576 protoporphyrinogen oxidase

Probab=99.90  E-value=3.4e-22  Score=189.57  Aligned_cols=251  Identities=18%  Similarity=0.188  Sum_probs=160.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhhC-CCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (342)
                      +++||+|||||++||+||++|+++ |++|+|+|+++++||+++|.+.+                    .+.+|.+++.+.
T Consensus        11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~~~--------------------g~~~d~G~~~~~   70 (496)
T PLN02576         11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVSED--------------------GFIWEEGPNSFQ   70 (496)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEeccC--------------------CeEEecCCchhc
Confidence            457999999999999999999999 99999999999999999998653                    377888988888


Q ss_pred             cccHHHHHHhhcCCcceeeEEE-cCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccccccc
Q 019351           82 ANGALVRVLIHTDVTKYLYFKA-VDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (342)
Q Consensus        82 ~~~~l~~~l~~~~~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
                      ...+.+..+.+.++...+.+.. ....+++.+|+++.+|.+..+.+...++++.++-.+  ..... .+....+      
T Consensus        71 ~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~------  141 (496)
T PLN02576         71 PSDPELTSAVDSGLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRA--GLGAF-GWKRPPP------  141 (496)
T ss_pred             cCcHHHHHHHHcCChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHHHH--hHHHh-hccCCCC------
Confidence            7776666666667766554432 233566679999988876555555666665443221  11111 1100000      


Q ss_pred             CCCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhc--------cc-------------
Q 019351          161 DLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIA--------RF-------------  218 (342)
Q Consensus       161 ~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-------------  218 (342)
                      ..++.|+.+|+++. +.+...+ ++.+++.-....+....+....++.+..+....+        ..             
T Consensus       142 ~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~  220 (496)
T PLN02576        142 PGREESVGEFVRRH-LGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRD  220 (496)
T ss_pred             CCCCCcHHHHHHHh-cCHHHHHHHHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccc
Confidence            12578999999987 6666654 4444442211111111122222222211100000        00             


Q ss_pred             -----cCCCceEEeCCCCChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEE--e-CC-cEEEcCEEEECCCC
Q 019351          219 -----QGGSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVT--S-EG-ETAKCKKVVCDPSY  287 (342)
Q Consensus       219 -----~g~~~~~~~~gG~~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~--~-~g-~~~~a~~vI~~~~~  287 (342)
                           .......+.++|++.|++.|++.+   + .+|++|++|++|+.+ +++.+.|+  + +| +++.||+||+|+..
T Consensus       221 ~~~~~~~~~~~~~~~gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~-~~~~~~v~~~~~~g~~~~~ad~VI~a~P~  295 (496)
T PLN02576        221 PRLPKPKGQTVGSFRGGLQTLPDALAKRL---GKDKVKLNWKVLSLSKN-DDGGYSLTYDTPEGKVNVTAKAVVMTAPL  295 (496)
T ss_pred             cccccccCCeeEeccchHHHHHHHHHHhh---CcCcEEcCCEEEEEEEC-CCCcEEEEEecCCCceeEEeCEEEECCCH
Confidence                 011234667899999999998754   5 689999999999987 44312333  2 34 36999999999763

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.90  E-value=2.3e-22  Score=189.18  Aligned_cols=242  Identities=15%  Similarity=0.219  Sum_probs=156.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhC----CCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchh
Q 019351            5 YDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (342)
                      .||+|||||++||+||++|+++    |++|+|+|+++++||+++|...+                    .+.+|.+++.+
T Consensus         3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~~~--------------------g~~~e~G~~~~   62 (462)
T TIGR00562         3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKED--------------------GYLIERGPDSF   62 (462)
T ss_pred             ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEeeC--------------------CEEEecCcccc
Confidence            5899999999999999999999    99999999999999999988643                    26778888877


Q ss_pred             ccccH-HHHHHhhcCCcceeeEEEcCceEEEeC-CeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccccc
Q 019351           81 IANGA-LVRVLIHTDVTKYLYFKAVDGSFVYNK-GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE  158 (342)
Q Consensus        81 ~~~~~-l~~~l~~~~~~~~l~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  158 (342)
                      ....+ +.+++.+.++...+........+++.+ |+.+.+|.+..+.+...+.++..+  +...+...   ....     
T Consensus        63 ~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~---~~~~-----  132 (462)
T TIGR00562        63 LERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGK--LRAGMDFI---RPAS-----  132 (462)
T ss_pred             ccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhh--HHhhhhhc---cCCC-----
Confidence            76554 667777777766543322334555555 888888866555555555554332  11111111   1000     


Q ss_pred             ccCCCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCch----HHHHHHHHHHHH-------hh-----------
Q 019351          159 GMDLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPA----LDTVKRMKLYAE-------SI-----------  215 (342)
Q Consensus       159 ~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~-------~~-----------  215 (342)
                        ...+.|+.||+++. +.+.+.+ ++.+.+.    ..+..++.    ...+..+.....       .+           
T Consensus       133 --~~~d~s~~e~l~~~-~g~~~~~~~~~p~~~----~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  205 (462)
T TIGR00562       133 --PGKDESVEEFVRRR-FGDEVVENLIEPLLS----GIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSG  205 (462)
T ss_pred             --CCCCcCHHHHHHHh-cCHHHHHHHHHHHhc----ccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCcccc
Confidence              11358999999877 5555544 4444442    22222332    222222111100       00           


Q ss_pred             -cccc-C-CCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351          216 -ARFQ-G-GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (342)
Q Consensus       216 -~~~~-g-~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~  287 (342)
                       ..+. + ...+.++++|++.+++.|++.+.  .++|+++++|++|..+ ++++ .|++ +|++++||+||+|++.
T Consensus       206 ~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~-~~~~-~v~~~~g~~~~ad~VI~t~P~  277 (462)
T TIGR00562       206 LQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHR-GSNY-TLELDNGVTVETDSVVVTAPH  277 (462)
T ss_pred             ccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEec-CCcE-EEEECCCcEEEcCEEEECCCH
Confidence             0010 1 12256788999999999998663  2789999999999987 5554 4555 5678999999999864

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PRK07208 hypothetical protein; Provisional

Probab=99.90  E-value=8.7e-22  Score=185.97  Aligned_cols=251  Identities=16%  Similarity=0.188  Sum_probs=152.6

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchh
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (342)
                      |+.+.||+|||||++||+||++|+++|++|+|+|+++++||++.|....                    .+.+|.+++.+
T Consensus         1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~~~--------------------g~~~d~G~h~~   60 (479)
T PRK07208          1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVTYK--------------------GNRFDIGGHRF   60 (479)
T ss_pred             CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeeccC--------------------CceEccCCcee
Confidence            7777899999999999999999999999999999999999999987643                    25567777666


Q ss_pred             cccc-HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccc
Q 019351           81 IANG-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (342)
Q Consensus        81 ~~~~-~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
                      .... .+.+++.+......+... .....++.+|..+.+|.+..+.+..  +++..  .+.....++.....  +     
T Consensus        61 ~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~l~~--~~~~~--~~~~~~~~~~~~~~--~-----  128 (479)
T PRK07208         61 FSKSPEVMDLWNEILPDDDFLLR-PRLSRIYYRGKFFDYPLKAFDALKN--LGLWR--TAKCGASYLKARLR--P-----  128 (479)
T ss_pred             ccCCHHHHHHHHHhcCCCccccc-cccceEEECCEEecCCcchhHHHHh--CCHhH--HHHHHHHHHHHhcC--C-----
Confidence            5444 444555554432222111 2233455688888777543333321  22221  11222222222110  0     


Q ss_pred             cCCCCCcHHHHHHHcCCChhHH-HHHHhhhh-cccCCCCCCCchHHHHH---------HHHHHHHhh-c-------ccc-
Q 019351          160 MDLTRVTTRELIAKYGLDDNTI-DFIGHALA-LHRDDRYLNEPALDTVK---------RMKLYAESI-A-------RFQ-  219 (342)
Q Consensus       160 ~~~~~~s~~~~l~~~~~~~~~~-~~~~~~~~-l~~~~~~~~~~~~~~~~---------~~~~~~~~~-~-------~~~-  219 (342)
                       ..+..|+.+|+.+. +.+.+. .++.+... ++. .+....+....+.         .+....... +       ... 
T Consensus       129 -~~~~~s~~e~l~~~-~g~~~~~~~~~p~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (479)
T PRK07208        129 -RKEEDSFEDWVINR-FGRRLYSTFFKGYTEKVWG-VPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETS  205 (479)
T ss_pred             -CCCCCCHHHHHHHh-hCHHHHHHHHHHhhhhhhC-CChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCcccc
Confidence             01569999999876 444444 34444332 222 1111112221111         111111110 0       000 


Q ss_pred             CCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCc-EEEEEe---CCc--EEEcCEEEECCCC
Q 019351          220 GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK-VVGVTS---EGE--TAKCKKVVCDPSY  287 (342)
Q Consensus       220 g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~-~~~v~~---~g~--~~~a~~vI~~~~~  287 (342)
                      ....+.+|+||++.+++.|++.+++.|++|+++++|++|..+ +++ ++.++.   +|.  ++.||+||+|++.
T Consensus       206 ~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~-~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p~  278 (479)
T PRK07208        206 LIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHD-GDGRIAVVVVNDTDGTEETVTADQVISSMPL  278 (479)
T ss_pred             ceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEc-CCcEEEEEEEEcCCCCEEEEEcCEEEECCCH
Confidence            024578899999999999999999999999999999999987 444 344443   242  6899999999864

>TIGR02730 carot_isom carotene isomerase

Probab=99.89  E-value=1.4e-22  Score=191.44  Aligned_cols=252  Identities=21%  Similarity=0.287  Sum_probs=151.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc-
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-   83 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-   83 (342)
                      +||+|||||++||+||.+|+++|++|+||||++.+||++++++.++                    |.+|.+++.+... 
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G--------------------~~fd~g~~~~~~~~   60 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFEREG--------------------YRFDVGASMIFGFG   60 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEeccCC--------------------EEEEecchhheecC
Confidence            6999999999999999999999999999999999999999986542                    5556666554321 


Q ss_pred             -----cHHHHHHhhcCCcceeeEEEcCceEEE--eCCeEEecCCCcHHHhcCCCCCh--hhHHHHHHHHHHHhhcCC---
Q 019351           84 -----GALVRVLIHTDVTKYLYFKAVDGSFVY--NKGKVHKVPATDMEALKSPLMGI--FEKRRARKFFIYVQDYDE---  151 (342)
Q Consensus        84 -----~~l~~~l~~~~~~~~l~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~--~~k~~~~~~~~~~~~~~~---  151 (342)
                           ..+.+.+...+  ..+++......+.+  .+|..+.++. +.+.+...+...  -+...+.+|++.+.....   
T Consensus        61 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~-d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~  137 (493)
T TIGR02730        61 DKGTTNLLTRALAAVG--RKLETIPDPVQIHYHLPNGLNVKVHR-EYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLN  137 (493)
T ss_pred             CcccccHHHHHHHHcC--CcccccCCCccEEEECCCCeeEeeec-CHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHH
Confidence                 12222332222  12332222222222  3565566663 454443332221  122344455444332100   


Q ss_pred             -------CCcccc------------cccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHH
Q 019351          152 -------NDPKTH------------EGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYA  212 (342)
Q Consensus       152 -------~~~~~~------------~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  212 (342)
                             ..+...            ....+...|+.++++++.-++.++.++...............|....   ...+ 
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~---~~~~-  213 (493)
T TIGR02730       138 SMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINA---GMVF-  213 (493)
T ss_pred             hhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhH---HHhh-
Confidence                   000000            00112247788888888666766666543221111110011121111   1111 


Q ss_pred             HhhccccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC
Q 019351          213 ESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (342)
Q Consensus       213 ~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~  288 (342)
                         ... ....++++.||+..++++|.+.++++|++|+++++|++|..+ ++++.+|.+ +|+++.||+||+|++.+
T Consensus       214 ---~~~-~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~g~~~~ad~vV~a~~~~  285 (493)
T TIGR02730       214 ---SDR-HYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILE-NGKAVGVKLADGEKIYAKRIVSNATRW  285 (493)
T ss_pred             ---ccc-ccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEec-CCcEEEEEeCCCCEEEcCEEEECCChH
Confidence               001 123456899999999999999999999999999999999887 678888887 67789999999998764

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.88  E-value=1.1e-21  Score=184.17  Aligned_cols=246  Identities=15%  Similarity=0.175  Sum_probs=147.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   83 (342)
                      +|+|||||++||+||+.|+++|  ++|+|||+++++||+++|.+..                    .+.+|++.+.+...
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~~~--------------------g~~~d~G~~~~~~~   61 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVRKD--------------------GFPIELGPESFLAR   61 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEeeC--------------------CeEEecChHHhcCC
Confidence            6999999999999999999988  8999999999999999998653                    25667777655543


Q ss_pred             c-HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCc--------HHHhcCCCCChhhHHHHHHHHHHHhhcCCCCc
Q 019351           84 G-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATD--------MEALKSPLMGIFEKRRARKFFIYVQDYDENDP  154 (342)
Q Consensus        84 ~-~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~  154 (342)
                      . .+.+++.+.++............+++.+|+.+.+|...        ...+...+.+..++  +    .......    
T Consensus        62 ~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~----  131 (451)
T PRK11883         62 KPSAPALVKELGLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGK--L----RAAADLR----  131 (451)
T ss_pred             cHHHHHHHHHcCCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHH--H----HhhCccc----
Confidence            3 46667777776654322222334566688877766421        11111122221111  0    0111110    


Q ss_pred             ccccccCCCCCcHHHHHHHcCCChhHHH-HHHhhhh-cccCCCCCCCchHHHHHHHHHHHHh-------h----ccc--c
Q 019351          155 KTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALA-LHRDDRYLNEPALDTVKRMKLYAES-------I----ARF--Q  219 (342)
Q Consensus       155 ~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~-------~----~~~--~  219 (342)
                       .......++.|+.+|+++. +++...+ ++.+.+. ++. ......++...+..+..+...       +    ...  .
T Consensus       132 -~~~~~~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  208 (451)
T PRK11883        132 -PPRWKPGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYA-GDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKK  208 (451)
T ss_pred             -CCCCCCCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeec-CChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCC
Confidence             0011123578999999876 6665544 3444332 221 111111222222222111111       0    000  0


Q ss_pred             CCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351          220 GGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       220 g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~  287 (342)
                      ....+.++++|+..+++.|++.+...  +|+++++|++|+.+ ++++..+..+|+++.||+||+|++.
T Consensus       209 ~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~-~~~~~v~~~~g~~~~~d~vI~a~p~  273 (451)
T PRK11883        209 TKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKS-GDGYEIVLSNGGEIEADAVIVAVPH  273 (451)
T ss_pred             CCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEc-CCeEEEEECCCCEEEcCEEEECCCH
Confidence            12356789999999999999866432  89999999999887 5554333347889999999999864

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.88  E-value=8.9e-22  Score=186.30  Aligned_cols=251  Identities=17%  Similarity=0.206  Sum_probs=141.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc--
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA--   82 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--   82 (342)
                      .||||||||++||+||.+|+++|++|+|+|+++++||++++++.+                    .|.+|.+++++..  
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~~~--------------------G~~fD~G~~~~~~~~   61 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFRRR--------------------GFTFDVGATQVAGLE   61 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceeccC--------------------CEEEeecceEEEecC
Confidence            489999999999999999999999999999999999999999764                    2666777666543  


Q ss_pred             ccH-HHHHHhhcCCcceeeEEEcCceE--EEeCC-eEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhh-------cCC
Q 019351           83 NGA-LVRVLIHTDVTKYLYFKAVDGSF--VYNKG-KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQD-------YDE  151 (342)
Q Consensus        83 ~~~-l~~~l~~~~~~~~l~~~~~~~~~--~~~~g-~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~-------~~~  151 (342)
                      .+. +-+.+.+.++... .+...++.+  .+.+| ..+.++. +.+.+...+...+- .. .+|+..+.+       ...
T Consensus        62 ~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~-d~~~~~~~l~~~~p-~~-~~~~~~~~~~~~~~~~~~~  137 (492)
T TIGR02733        62 PGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWH-DPDRWQKERERQFP-GS-ERFWQLCSQLHQSNWRFAG  137 (492)
T ss_pred             cCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeec-CHHHHHHHHHHHCC-Ch-HHHHHHHHHHHHHHHHHhh
Confidence            222 2233334443311 112233222  22355 3444443 33333221111110 00 011111110       000


Q ss_pred             CC----ccc---------------ccccCCCCCcHHHHHHHcC--CChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHH
Q 019351          152 ND----PKT---------------HEGMDLTRVTTRELIAKYG--LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKL  210 (342)
Q Consensus       152 ~~----~~~---------------~~~~~~~~~s~~~~l~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  210 (342)
                      ..    +..               .....+...|+.+|+++++  -++.++.++......     +...+..........
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~-----~~~~~~~~~~~~~~~  212 (492)
T TIGR02733       138 RDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKL-----YSQEDADETAALYGA  212 (492)
T ss_pred             cCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhh-----hccCChhhhhHHHHH
Confidence            00    000               0001123588899998864  234445444332211     111121111111110


Q ss_pred             HHHhhccccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC-----cEEEcCEEEEC
Q 019351          211 YAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-----ETAKCKKVVCD  284 (342)
Q Consensus       211 ~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g-----~~~~a~~vI~~  284 (342)
                      ....+..  .....++++||++.++++|++.++++|++|+++++|++|..+ ++++.+|.. ++     +++.||+||++
T Consensus       213 ~~~~~~~--~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~-~~~~~gv~~~~~~~~~~~~~~ad~VI~~  289 (492)
T TIGR02733       213 TVLQMAQ--APHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTK-GGRAGWVVVVDSRKQEDLNVKADDVVAN  289 (492)
T ss_pred             HHhhccc--cCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEe-CCeEEEEEEecCCCCceEEEECCEEEEC
Confidence            0011111  112346799999999999999999999999999999999887 665555544 43     57999999999


Q ss_pred             CCC
Q 019351          285 PSY  287 (342)
Q Consensus       285 ~~~  287 (342)
                      +++
T Consensus       290 ~~~  292 (492)
T TIGR02733       290 LPP  292 (492)
T ss_pred             CCH
Confidence            875

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.86  E-value=5.8e-20  Score=172.14  Aligned_cols=260  Identities=16%  Similarity=0.146  Sum_probs=153.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc-c
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-G   84 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~   84 (342)
                      +|+|||||++||+||+.|+++|++|+|+|+++++||+++++...                   ..+.+|.+++++... .
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~-------------------~g~~~d~G~~~~~~~~~   61 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDG-------------------DGNHIEMGLHVFFGCYA   61 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecC-------------------CCceEeeceEEecCchH
Confidence            58999999999999999999999999999999999999986321                   235567777766543 3


Q ss_pred             HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEe--------cC-CCcHHHhcCCCCChhhHHHHHHHHH---HHhhcCCC
Q 019351           85 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK--------VP-ATDMEALKSPLMGIFEKRRARKFFI---YVQDYDEN  152 (342)
Q Consensus        85 ~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~--------~~-~~~~~~~~~~~~~~~~k~~~~~~~~---~~~~~~~~  152 (342)
                      ++.+++.+.++...+.+......+...++....        .| ......++...+++.+|-.+.....   ........
T Consensus        62 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~~  141 (474)
T TIGR02732        62 NLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVDY  141 (474)
T ss_pred             HHHHHHHHcCCccccccccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhcccc
Confidence            555666666665544332211112222333221        12 1123445556666655433322211   11100000


Q ss_pred             CcccccccCCCCCcHHHHHHHcCCChh-HHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCC
Q 019351          153 DPKTHEGMDLTRVTTRELIAKYGLDDN-TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGL  231 (342)
Q Consensus       153 ~~~~~~~~~~~~~s~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~  231 (342)
                      ......+...++.|+.+|+++++.++. +..++.+++......+....++...+..+..+    ......+...+++||.
T Consensus       142 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~----~~~~~~s~~~~~~g~~  217 (474)
T TIGR02732       142 DGAMKTIRDLDKISFAEWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLF----AAKTEASKLRMLKGSP  217 (474)
T ss_pred             chhhhhhhhhccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH----HhCCCcceeeeecCCc
Confidence            000001112357999999999988876 44456665532211111111222222222222    1111245667888887


Q ss_pred             Ch-HHHHHHHHHHHcCcEEEcCCccceEEEcC--CC--cEEEEEe-CC---cEEEcCEEEECCCCC
Q 019351          232 GE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS-EG---ETAKCKKVVCDPSYL  288 (342)
Q Consensus       232 ~~-l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~--~~~~v~~-~g---~~~~a~~vI~~~~~~  288 (342)
                      .. +.+.|.+.+++.|++|+++++|++|..++  ++  ++++|.. +|   .++.||+||+|++.+
T Consensus       218 ~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~  283 (474)
T TIGR02732       218 DKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDVP  283 (474)
T ss_pred             chhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCChH
Confidence            76 56679999999999999999999998752  12  2555555 33   458999999998754

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02612 phytoene desaturase

Probab=99.85  E-value=2.7e-19  Score=170.82  Aligned_cols=256  Identities=14%  Similarity=0.112  Sum_probs=152.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   83 (342)
                      ..||+|||||++||+||++|+++|++|+|+|+++++||++.++...                   ..+.+|.+.+++...
T Consensus        93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~-------------------~G~~~D~G~h~~~g~  153 (567)
T PLN02612         93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGA  153 (567)
T ss_pred             CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcC-------------------CCCEEcCCceEEeCC
Confidence            4789999999999999999999999999999999999999987531                   124566666655543


Q ss_pred             -cHHHHHHhhcCCcceeeEEEcCceEEEe--CCeEEe--cC----CC---cHHHhc-CCCCChhhHHHHHHHHHHHhhcC
Q 019351           84 -GALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVHK--VP----AT---DMEALK-SPLMGIFEKRRARKFFIYVQDYD  150 (342)
Q Consensus        84 -~~l~~~l~~~~~~~~l~~~~~~~~~~~~--~g~~~~--~~----~~---~~~~~~-~~~~~~~~k~~~~~~~~~~~~~~  150 (342)
                       ..+.+++.+.++...+.+......+.+.  .+....  +|    ..   ....+. ...+++.++-.+  .........
T Consensus       154 ~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~--~~~~~~~~~  231 (567)
T PLN02612        154 YPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKF--AIGLLPAIV  231 (567)
T ss_pred             CchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHH--HHhhhHHhc
Confidence             3456667777776555544322222221  222222  11    11   111221 122333332111  011100000


Q ss_pred             CCCcccccccCCCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCC
Q 019351          151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY  229 (342)
Q Consensus       151 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g  229 (342)
                      ...+   ....+++.|+.+|+++.+.++...+ ++.+++......+....+....+..+..++   ... ..+...++.|
T Consensus       232 ~~~~---~~~~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l---~~~-~gs~~~~~~G  304 (567)
T PLN02612        232 GGQA---YVEAQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRFL---QEK-HGSKMAFLDG  304 (567)
T ss_pred             ccch---hhhhcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHHH---hcc-CCceEeeecC
Confidence            0000   1113468999999999999987775 555544221111111112222222222221   111 2345566766


Q ss_pred             CC-ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351          230 GL-GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (342)
Q Consensus       230 G~-~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~  287 (342)
                      +. ..+++.|++.++++|++|+++++|++|..+++++++++++ +|+++.||+||+|++.
T Consensus       305 ~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~  364 (567)
T PLN02612        305 NPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPV  364 (567)
T ss_pred             CchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCH
Confidence            64 6789999999988999999999999999864555565665 7778999999999753

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.85  E-value=3.1e-19  Score=167.43  Aligned_cols=254  Identities=15%  Similarity=0.141  Sum_probs=146.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc-c
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-G   84 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~   84 (342)
                      +|+|||||++||+||++|+++|++|+|+|+++++||++++....                   ..+.+|.+.+++... .
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~-------------------~g~~~d~G~~~~~~~~~   61 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDE-------------------DGDWYETGLHIFFGAYP   61 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECC-------------------CCCEEEcCcceeccCCc
Confidence            58999999999999999999999999999999999999886421                   124566666655442 3


Q ss_pred             HHHHHHhhcCCcceeeEEEcCceEEEe--CCeEEe--cCC--CcHH----Hhc-CCCCChhhHHHHHHHHHHHhhcCCCC
Q 019351           85 ALVRVLIHTDVTKYLYFKAVDGSFVYN--KGKVHK--VPA--TDME----ALK-SPLMGIFEKRRARKFFIYVQDYDEND  153 (342)
Q Consensus        85 ~l~~~l~~~~~~~~l~~~~~~~~~~~~--~g~~~~--~~~--~~~~----~~~-~~~~~~~~k~~~~~~~~~~~~~~~~~  153 (342)
                      .+.+++.+.++...+.+......+...  ++....  .+.  ...+    .+. ...+++.++-.+..  ..........
T Consensus        62 ~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~  139 (453)
T TIGR02731        62 NMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAI--GLLPAIVRGQ  139 (453)
T ss_pred             hHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHH--HhHHHHhcCc
Confidence            556667767766554443322211111  122221  111  1111    111 11233333221111  1100000000


Q ss_pred             cccccccCCCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCC-C
Q 019351          154 PKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG-L  231 (342)
Q Consensus       154 ~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG-~  231 (342)
                      +   ....+++.|+.+|+++.++++.+.+ ++.+++......+....+....+..+..+..  ..  +.+...+..|+ +
T Consensus       140 ~---~~~~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~--~~--~g~~~~~~~g~~~  212 (453)
T TIGR02731       140 K---YVEEQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFLQ--ER--HGSKMAFLDGAPP  212 (453)
T ss_pred             c---chhhhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHh--cC--CCCeeEeecCCCh
Confidence            0   1113468999999999999998765 4555442211111101112222222222221  11  12333345554 5


Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCc-----EEEcCEEEECCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-----TAKCKKVVCDPSY  287 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~-----~~~a~~vI~~~~~  287 (342)
                      ..+++.|.+.+++.|++|+++++|++|..++++++++|++ +++     ++.||.||+|++.
T Consensus       213 ~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~  274 (453)
T TIGR02731       213 ERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPV  274 (453)
T ss_pred             HHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCH
Confidence            7889999999999999999999999998653566767766 454     7999999998764

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02487 zeta-carotene desaturase

Probab=99.84  E-value=6e-19  Score=166.78  Aligned_cols=261  Identities=18%  Similarity=0.163  Sum_probs=156.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc-
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-   83 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-   83 (342)
                      .+|+|||||++||++|+.|+++|++|+|+|+++.+||++.++...                   ..+.+|.+.+++... 
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~-------------------~g~~~e~G~h~~~~~~  136 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDK-------------------NGNHIEMGLHVFFGCY  136 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeec-------------------CCcEEecceeEecCCc
Confidence            589999999999999999999999999999999999999887421                   235567777766543 


Q ss_pred             cHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEe----cCCC-cH----HHhcCCCCChhhHHHHHHHH---HHHhhcCC
Q 019351           84 GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK----VPAT-DM----EALKSPLMGIFEKRRARKFF---IYVQDYDE  151 (342)
Q Consensus        84 ~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~----~~~~-~~----~~~~~~~~~~~~k~~~~~~~---~~~~~~~~  151 (342)
                      .++.+++.+.++...+.+......+...+|....    +|.. ..    ..+....+++.+|-.+..-.   ..+.....
T Consensus       137 ~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~~  216 (569)
T PLN02487        137 NNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALVD  216 (569)
T ss_pred             HHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhccC
Confidence            3566777777776554433211122222444421    2211 11    33344555544432221000   00000000


Q ss_pred             CCcccccccCCCCCcHHHHHHHcCCChhHH-HHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCC
Q 019351          152 NDPKTHEGMDLTRVTTRELIAKYGLDDNTI-DFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG  230 (342)
Q Consensus       152 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG  230 (342)
                      .......+-..++.|+.+|+++++.++... .++.+++...........++...+..+..    +......+...+++||
T Consensus       217 ~~~~~~~~~~~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~----~~~~~~~~~l~~~~Gg  292 (569)
T PLN02487        217 PDGAMRDIRDLDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSL----FATKTEASLLRMLKGS  292 (569)
T ss_pred             ccccccccccccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH----HhhcCCcceeeecCCC
Confidence            000001111346799999999998877544 45555443222121111112222222211    1111123557899999


Q ss_pred             CCh-HHHHHHHHHHHcCcEEEcCCccceEEEcC--CC--cEEEEEe--C--CcEEEcCEEEECCCCC
Q 019351          231 LGE-LPQAFARLSAVYGGTYMLNKPECKVEFDE--EG--KVVGVTS--E--GETAKCKKVVCDPSYL  288 (342)
Q Consensus       231 ~~~-l~~~l~~~~~~~G~~i~~~~~V~~i~~~~--~~--~~~~v~~--~--g~~~~a~~vI~~~~~~  288 (342)
                      +.. +++.+++.++.+|++|+++++|++|..+.  ++  ++++|++  +  +.++.||.||+|++.+
T Consensus       293 ~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~  359 (569)
T PLN02487        293 PDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDVP  359 (569)
T ss_pred             chHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCHH
Confidence            985 99999999999999999999999998862  22  3677776  3  3468999999998754

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.82  E-value=1.4e-18  Score=161.49  Aligned_cols=241  Identities=13%  Similarity=0.196  Sum_probs=145.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhC----CCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcch
Q 019351            4 EYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   79 (342)
                      ..+|+|||||++||+||++|++.    |.+|+|||+++.+||++.+.....                  .+|..+.++.+
T Consensus        22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~------------------~Gy~~~~G~~~   83 (576)
T PRK13977         22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPE------------------KGYVARGGREM   83 (576)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCccccc------------------CCEEEECCCCc
Confidence            36899999999999999999995    689999999999999998754211                  23556666665


Q ss_pred             hccccHHHHHHhhc---------CCcceeeEEEcCceE---EE--eCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHH
Q 019351           80 IIANGALVRVLIHT---------DVTKYLYFKAVDGSF---VY--NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIY  145 (342)
Q Consensus        80 ~~~~~~l~~~l~~~---------~~~~~l~~~~~~~~~---~~--~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~  145 (342)
                      ......+.+++.+.         -..++..+...++.+   .+  .+|..+.          ...+.+-. .....++..
T Consensus        84 ~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d----------~~~~~L~~-k~r~~Ll~l  152 (576)
T PRK13977         84 ENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILD----------TDKFGLSK-KDRKELLKL  152 (576)
T ss_pred             cchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEE----------CcCCCCCH-HHHHHHHHH
Confidence            44444566665332         122344444443331   11  1222221          22222212 222333333


Q ss_pred             HhhcCCCCcccccccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceE
Q 019351          146 VQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI  225 (342)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  225 (342)
                      +..-.         -.+++.++.||+++..+...+..++....+..     ...++......+.+|++.+......+.+.
T Consensus       153 ~l~~e---------~~Ld~~tI~d~f~~~Ff~t~Fw~~w~t~FaF~-----~whSA~E~rry~~rf~~~~~~l~~~s~l~  218 (576)
T PRK13977        153 LLTPE---------EKLDDKTIEDWFSPEFFETNFWYYWRTMFAFE-----KWHSALEMRRYMHRFIHHIGGLPDLSGLK  218 (576)
T ss_pred             hccCH---------HHhCCcCHHHHHhhcCchhHHHHHHHHHHCCc-----hhhHHHHHHHHHHHHHHhhccCCcccccc
Confidence            32211         13578999999998777665555554443221     12234444444444444333332234444


Q ss_pred             EeCCC-CChHHHHHHHHHHHcCcEEEcCCccceEEEc-CC--CcEEEEEe--CCc--E---EEcCEEEECCCC
Q 019351          226 YPLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFD-EE--GKVVGVTS--EGE--T---AKCKKVVCDPSY  287 (342)
Q Consensus       226 ~~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~--~~~~~v~~--~g~--~---~~a~~vI~~~~~  287 (342)
                      +.++. +..++..|.++++++|++|+++++|++|..+ ++  ++++++..  +|+  +   ..+|.||+|+|-
T Consensus       219 ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs  291 (576)
T PRK13977        219 FTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGS  291 (576)
T ss_pred             CCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCc
Confidence            54443 7899999999999999999999999999874 23  45677765  332  2   457889988763

>PLN02268 probable polyamine oxidase

Probab=99.80  E-value=5e-19  Score=165.17  Aligned_cols=253  Identities=16%  Similarity=0.171  Sum_probs=134.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc---
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA---   82 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---   82 (342)
                      +|+|||||++||+||+.|.++|++|+|||+++++||+++|....                    .+.+|+++++++.   
T Consensus         2 ~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~~~--------------------g~~~d~G~~~i~~~~~   61 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDYSF--------------------GFPVDMGASWLHGVCN   61 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecCcC--------------------CcccCCCCeeEeccCC
Confidence            79999999999999999999999999999999999999987532                    1344555555532   


Q ss_pred             ccHHHHHHhhcCCcceeeEEEcCceEEEeC---------CeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCC
Q 019351           83 NGALVRVLIHTDVTKYLYFKAVDGSFVYNK---------GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND  153 (342)
Q Consensus        83 ~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  153 (342)
                      ..++.+++.+.++..+-  ...+..+++..         +....+|......+         ...+.++...+.....  
T Consensus        62 ~~~~~~l~~~lgl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~--  128 (435)
T PLN02268         62 ENPLAPLIGRLGLPLYR--TSGDNSVLYDHDLESYALFDMDGNQVPQELVTKV---------GETFERILEETEKVRD--  128 (435)
T ss_pred             CchHHHHHHHhCCceEe--ccCCccccccccccccceecCCCCCCCHHHHHHH---------HHHHHHHHHHHHHHHh--
Confidence            12455666666664321  00111111211         11111111100000         0111222222221110  


Q ss_pred             cccccccCCCCCcHHHHHHHcCCCh-------hHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEE
Q 019351          154 PKTHEGMDLTRVTTRELIAKYGLDD-------NTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIY  226 (342)
Q Consensus       154 ~~~~~~~~~~~~s~~~~l~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  226 (342)
                            ...++.|+.+|++++.-..       ...+++...+... ...+..++...++..+..    ...+.|.  ..+
T Consensus       129 ------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ls~~~~~~----~~~~~g~--~~~  195 (435)
T PLN02268        129 ------EHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRM-EGWFAADADTISLKSWDQ----EELLEGG--HGL  195 (435)
T ss_pred             ------ccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHH-HHHhCCChHhCchhhcCC----ccccCCC--cee
Confidence                  0125788999876541110       1112222211110 011111221111110000    0011122  235


Q ss_pred             eCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC----------Ccc----
Q 019351          227 PLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL----------PNK----  291 (342)
Q Consensus       227 ~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~----------~~~----  291 (342)
                      ..+|+..+++.|++     +++|+++++|++|..+ ++++. |++ +|+++.||+||+|++..          |..    
T Consensus       196 ~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~  268 (435)
T PLN02268        196 MVRGYDPVINTLAK-----GLDIRLNHRVTKIVRR-YNGVK-VTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWK  268 (435)
T ss_pred             ecCCHHHHHHHHhc-----cCceeCCCeeEEEEEc-CCcEE-EEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHH
Confidence            67899999998876     6789999999999987 55544 554 67789999999987532          111    


Q ss_pred             ---cc--ccceeEEEEEEecCCCCC
Q 019351          292 ---VR--KVGRVARAIAIMSHPIPN  311 (342)
Q Consensus       292 ---~~--~~~~~~~~~~i~~~~l~~  311 (342)
                         +.  .++...+.++...+|.|.
T Consensus       269 ~~ai~~~~~g~~~Kv~l~f~~~fw~  293 (435)
T PLN02268        269 EEAISDLGVGIENKIALHFDSVFWP  293 (435)
T ss_pred             HHHHHhCCccceeEEEEEeCCCCCC
Confidence               01  123456667777888775

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.75  E-value=5.7e-17  Score=138.32  Aligned_cols=254  Identities=16%  Similarity=0.151  Sum_probs=137.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc-
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA-   82 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-   82 (342)
                      ..+|+|||+|++||+||+.|+++ ++|+++|++.++||.++|...+-  .+              ..+.+|.+-.+... 
T Consensus         8 r~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~~~~--d~--------------~g~~vDtGfiVyn~~   70 (447)
T COG2907           8 RRKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVAGNT--DG--------------GGVFVDTGFIVYNER   70 (447)
T ss_pred             CcceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceeeccc--cC--------------CceeecceeEEecCC
Confidence            47899999999999999999977 89999999999999999985210  00              11233333222211 


Q ss_pred             -ccHHHHHHhhcCCcceeeEEEcCceEEEeCCe-EEec-CC-CcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccccc
Q 019351           83 -NGALVRVLIHTDVTKYLYFKAVDGSFVYNKGK-VHKV-PA-TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE  158 (342)
Q Consensus        83 -~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~-~~~~-~~-~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  158 (342)
                       ...+.+++...++.....+-++.-  -+..|. .+.- +. ...-..+..++..    ....++..+..+........+
T Consensus        71 tYpnl~~Lf~~iGv~t~as~Msf~v--~~d~gglEy~g~tgl~~L~aqk~n~l~p----Rf~~mlaeiLrf~r~~~~~~d  144 (447)
T COG2907          71 TYPNLTRLFKTIGVDTKASFMSFSV--SLDMGGLEYSGLTGLAGLLAQKRNLLRP----RFPCMLAEILRFYRSDLAPSD  144 (447)
T ss_pred             CcchHHHHHHHcCCCCcccceeEEE--EecCCceeeccCCCccchhhccccccch----hHHHHHHHHHHHhhhhccchh
Confidence             125566666555543221111100  011111 1111 00 0111112222221    111222222222110111112


Q ss_pred             ccCCCCCcHHHHHHHcCCChhHHH-HHHhhhh-cccCC--CCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChH
Q 019351          159 GMDLTRVTTRELIAKYGLDDNTID-FIGHALA-LHRDD--RYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGEL  234 (342)
Q Consensus       159 ~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~-l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l  234 (342)
                      .......++.+||++.+++..+.+ ++.++.+ +|...  +...-|+...+ ++......+ ...+.-.|..+.||...+
T Consensus       145 ~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~~~-~f~~nhGll-~l~~rp~wrtV~ggS~~y  222 (447)
T COG2907         145 NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACNFL-VFTDNHGLL-YLPKRPTWRTVAGGSRAY  222 (447)
T ss_pred             hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHHHH-HHHhccCce-ecCCCCceeEcccchHHH
Confidence            223357899999999999999876 4445443 33311  11111222222 111111111 121334456678999999


Q ss_pred             HHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCC
Q 019351          235 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS  286 (342)
Q Consensus       235 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~  286 (342)
                      ++.|+.   ..+.+|.++++|..|.+-++| ++.+..+|++-.+|.||+++-
T Consensus       223 vq~laa---~~~~~i~t~~~V~~l~rlPdG-v~l~~~~G~s~rFD~vViAth  270 (447)
T COG2907         223 VQRLAA---DIRGRIETRTPVCRLRRLPDG-VVLVNADGESRRFDAVVIATH  270 (447)
T ss_pred             HHHHhc---cccceeecCCceeeeeeCCCc-eEEecCCCCccccceeeeecC
Confidence            998876   336779999999999987444 565666899999999998763

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.73  E-value=3.6e-16  Score=145.35  Aligned_cols=237  Identities=17%  Similarity=0.182  Sum_probs=138.1

Q ss_pred             HHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc-cHHHHHHhhcCCc
Q 019351           18 ILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-GALVRVLIHTDVT   96 (342)
Q Consensus        18 ~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~l~~~~~~   96 (342)
                      +||++|+++|++|+|||+++++||++.|.+.++    |              .+.+|.+++.+... ..+.+++.+.++.
T Consensus         1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~~~g----~--------------~~~~d~G~~~~~~~~~~~~~l~~~lgl~   62 (419)
T TIGR03467         1 SAAVELARAGARVTLFEARPRLGGRARSFEDGG----L--------------GQTIDNGQHVLLGAYTNLLALLRRIGAE   62 (419)
T ss_pred             ChHHHHHhCCCceEEEecCCCCCCceeEeecCC----C--------------CcceecCCEEEEcccHHHHHHHHHhCCc
Confidence            589999999999999999999999999987542    1              12356666655543 3455666666665


Q ss_pred             ceeeEEEcCceEEEe-CCeE--Ee---cCCCcH---H-HhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccCCCCCc
Q 019351           97 KYLYFKAVDGSFVYN-KGKV--HK---VPATDM---E-ALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVT  166 (342)
Q Consensus        97 ~~l~~~~~~~~~~~~-~g~~--~~---~~~~~~---~-~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  166 (342)
                      ....+.... ..++. ++..  ..   ++. +.   . .+....++..++..+.+++..+.....        ...+..|
T Consensus        63 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~s  132 (419)
T TIGR03467        63 PRLQGPRLP-LPFYDPGGRLSRLRLSRLPA-PLHLARGLLRAPGLSWADKLALARALLALRRTRF--------RALDDTT  132 (419)
T ss_pred             hhhhcccCC-cceecCCCCceeecCCCCCC-CHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCc--------cccCCCC
Confidence            543321111 11111 2221  11   111 11   1 123334444444444433333222110        1236799


Q ss_pred             HHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHHHHHH-HhhccccCCCceEEeCCCCChHH-HHHHHHHH
Q 019351          167 TRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYA-ESIARFQGGSPYIYPLYGLGELP-QAFARLSA  243 (342)
Q Consensus       167 ~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~gG~~~l~-~~l~~~~~  243 (342)
                      +.+|++++++++...+ ++.+++..    .+..+|...........+ ..+........+.+|++|++.+. +.|++.++
T Consensus       133 ~~~~l~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~  208 (419)
T TIGR03467       133 VGDWLQAAGQSERLIERLWEPLLLS----ALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLD  208 (419)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHH----HcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHH
Confidence            9999999877877766 34443321    122233322222222221 11111111345789999988776 44888888


Q ss_pred             HcCcEEEcCCccceEEEcCCCcEEEE-EeCCcEEEcCEEEECCCC
Q 019351          244 VYGGTYMLNKPECKVEFDEEGKVVGV-TSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       244 ~~G~~i~~~~~V~~i~~~~~~~~~~v-~~~g~~~~a~~vI~~~~~  287 (342)
                      +.|++|++|++|++|+.+ ++++..+ .++|+++.||+||+|++.
T Consensus       209 ~~g~~i~~~~~V~~i~~~-~~~~~~~~~~~g~~~~~d~vi~a~p~  252 (419)
T TIGR03467       209 SRGGEVRLGTRVRSIEAN-AGGIRALVLSGGETLPADAVVLAVPP  252 (419)
T ss_pred             HcCCEEEcCCeeeEEEEc-CCcceEEEecCCccccCCEEEEcCCH
Confidence            889999999999999987 5554433 347788999999998764

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN02568 polyamine oxidase

Probab=99.73  E-value=1.1e-16  Score=151.41  Aligned_cols=86  Identities=20%  Similarity=0.191  Sum_probs=61.6

Q ss_pred             ceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC--------------
Q 019351          223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL--------------  288 (342)
Q Consensus       223 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~--------------  288 (342)
                      .+...++|++.|++.|++.+.  +..|+++++|++|..+ ++.+...+.+|+++.||+||+|.+..              
T Consensus       233 ~~~~i~gG~~~Li~~La~~L~--~~~I~ln~~V~~I~~~-~~~v~V~~~dG~~~~aD~VIvTvPl~vL~~~~~~~~i~F~  309 (539)
T PLN02568        233 EEITIAKGYLSVIEALASVLP--PGTIQLGRKVTRIEWQ-DEPVKLHFADGSTMTADHVIVTVSLGVLKAGIGEDSGLFS  309 (539)
T ss_pred             CeEEECCcHHHHHHHHHhhCC--CCEEEeCCeEEEEEEe-CCeEEEEEcCCCEEEcCEEEEcCCHHHHhhccccccceec
Confidence            356788999999999988552  4579999999999987 55544333477789999999987532              


Q ss_pred             Ccc----c---c--ccceeEEEEEEecCCCCC
Q 019351          289 PNK----V---R--KVGRVARAIAIMSHPIPN  311 (342)
Q Consensus       289 ~~~----~---~--~~~~~~~~~~i~~~~l~~  311 (342)
                      |..    .   .  .++.+.+.+..+.+|.|.
T Consensus       310 P~LP~~k~~Ai~~l~~g~~~Ki~l~f~~~fW~  341 (539)
T PLN02568        310 PPLPDFKTDAISRLGFGVVNKLFVELSPRPDG  341 (539)
T ss_pred             CCCCHHHHHHHHhcCCceeeEEEEEecCCCCC
Confidence            111    0   1  124567777888888764

>PLN02529 lysine-specific histone demethylase 1

Probab=99.73  E-value=4e-16  Score=150.73  Aligned_cols=263  Identities=14%  Similarity=0.146  Sum_probs=144.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   83 (342)
                      ..||+|||||++||+||..|+++|++|+|+|+++++||+++|....+      .+...++|+|++|.....        .
T Consensus       160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~------~g~~~~~DlGaswi~g~~--------~  225 (738)
T PLN02529        160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGR------KGQFAAVDLGGSVITGIH--------A  225 (738)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccC------CCCceEEecCCeeccccc--------c
Confidence            47999999999999999999999999999999999999999886420      000013455555443321        1


Q ss_pred             cHHHHHHhhcCCcceeeEEEcCce-EEE-eCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccC
Q 019351           84 GALVRVLIHTDVTKYLYFKAVDGS-FVY-NKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD  161 (342)
Q Consensus        84 ~~l~~~l~~~~~~~~l~~~~~~~~-~~~-~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
                      .++..+..+.++..+    ..... .++ .+|........  ..        ++ ..+..+++.+..+....+     ..
T Consensus       226 npl~~la~~lgl~~~----~~~~~~~~~~~~G~~v~~~~~--~~--------~~-~~~~~~l~~~~~l~~~~~-----~~  285 (738)
T PLN02529        226 NPLGVLARQLSIPLH----KVRDNCPLYKPDGALVDKEID--SN--------IE-FIFNKLLDKVTELRQIMG-----GF  285 (738)
T ss_pred             chHHHHHHHhCCCcc----ccCCCceEEeCCCcCcchhhh--hh--------HH-HHHHHHHHHHHHHHHhcc-----cC
Confidence            134444444443322    11111 122 24543311110  00        00 011111111111110000     01


Q ss_pred             CCCCcHHHHHHHcC------CChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHH
Q 019351          162 LTRVTTRELIAKYG------LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELP  235 (342)
Q Consensus       162 ~~~~s~~~~l~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~  235 (342)
                      .++.|+.+++++..      +++..++++...+....... ......-.+   ..+... ..+.....+....||+..++
T Consensus       286 ~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~-~~~~s~LSl---~~~~~~-~~~e~~G~~~~i~GG~~~Li  360 (738)
T PLN02529        286 ANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYAN-AGCLSDLSA---AYWDQD-DPYEMGGDHCFLAGGNWRLI  360 (738)
T ss_pred             ccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceec-CCChHHhhh---hHhhhc-cccccCCceEEECCcHHHHH
Confidence            35789999987542      44544444443332111010 011111111   111111 11212344667899999999


Q ss_pred             HHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC----------Ccc-------cc--ccc
Q 019351          236 QAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL----------PNK-------VR--KVG  296 (342)
Q Consensus       236 ~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~----------~~~-------~~--~~~  296 (342)
                      ++|++     +..|+++++|++|.++ +++ +.|+++++++.||+||+|.+..          |..       +.  .++
T Consensus       361 ~aLA~-----~L~IrLnt~V~~I~~~-~dG-VtV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~yG  433 (738)
T PLN02529        361 NALCE-----GVPIFYGKTVDTIKYG-NDG-VEVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGFG  433 (738)
T ss_pred             HHHHh-----cCCEEcCCceeEEEEc-CCe-EEEEECCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCCc
Confidence            99987     5679999999999987 554 4466677789999999997632          211       01  134


Q ss_pred             eeEEEEEEecCCCCCC
Q 019351          297 RVARAIAIMSHPIPNT  312 (342)
Q Consensus       297 ~~~~~~~i~~~~l~~~  312 (342)
                      .+.+.+..+.+|+|..
T Consensus       434 ~v~KV~L~F~~~FW~~  449 (738)
T PLN02529        434 LLNKVAMVFPSVFWGE  449 (738)
T ss_pred             eeEEEEEEeCCccccC
Confidence            5677888888898854

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.72  E-value=3.5e-16  Score=151.79  Aligned_cols=265  Identities=14%  Similarity=0.145  Sum_probs=142.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   83 (342)
                      ..+|+|||||++||+||++|++.|++|+|+|+++++||++.+....+    +            ...+.+|++..++...
T Consensus       238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~~g----~------------~~~~~~d~Gas~i~g~  301 (808)
T PLN02328        238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKMKG----D------------GVVAAADLGGSVLTGI  301 (808)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccccCC----C------------CcceeccCCceeecCC
Confidence            47899999999999999999999999999999999999999887542    0            0112334444443322


Q ss_pred             --cHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccC
Q 019351           84 --GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD  161 (342)
Q Consensus        84 --~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
                        .++..++.+.++..+.  ......+.+.+|..+.....  +.        .. .....+++.+.++....   .....
T Consensus       302 ~~npl~~l~~~lgl~~~~--~~~~~~~~~~dG~~~~~~~~--~~--------v~-~~f~~lL~~~~klr~~~---~~~~~  365 (808)
T PLN02328        302 NGNPLGVLARQLGLPLHK--VRDICPLYLPDGKAVDAEID--SK--------IE-ASFNKLLDRVCKLRQAM---IEEVK  365 (808)
T ss_pred             CccHHHHHHHHcCCceEe--cCCCceEEeCCCcCcchhhh--hh--------HH-HHHHHHHHHHHHHHHhh---hhccc
Confidence              2344445455543221  01111222335544321100  00        00 11122222221111000   00001


Q ss_pred             CCCCcHHHHHHHc------CCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHH
Q 019351          162 LTRVTTRELIAKY------GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELP  235 (342)
Q Consensus       162 ~~~~s~~~~l~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~  235 (342)
                      -.+.|+.++++++      ..++..+.++.+.++..   .+........+ .+..+... ..+.....+.+..||+..++
T Consensus       366 ~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanl---E~~~gs~ls~L-Sl~~w~qd-~~~e~~G~~~~v~GG~~~Li  440 (808)
T PLN02328        366 SVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANL---EYANASLMSNL-SMAYWDQD-DPYEMGGDHCFIPGGNDTFV  440 (808)
T ss_pred             ccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHH---hccchhhHHHH-Hhhhhhcc-ccccCCCeEEEECCcHHHHH
Confidence            1347888887632      23344333333322211   01111111111 11111110 01111234667889999999


Q ss_pred             HHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC----------Ccc-------cc--ccc
Q 019351          236 QAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL----------PNK-------VR--KVG  296 (342)
Q Consensus       236 ~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~----------~~~-------~~--~~~  296 (342)
                      ++|++.     ..|+++++|++|.+. ++++ .|+++|++++||+||+|....          |..       +.  .++
T Consensus       441 ~aLa~~-----L~I~ln~~V~~I~~~-~dgV-~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~yG  513 (808)
T PLN02328        441 RELAKD-----LPIFYERTVESIRYG-VDGV-IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLGYG  513 (808)
T ss_pred             HHHHhh-----CCcccCCeeEEEEEc-CCeE-EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCCCc
Confidence            999874     349999999999987 4544 455678899999999987532          111       11  134


Q ss_pred             eeEEEEEEecCCCCCC
Q 019351          297 RVARAIAIMSHPIPNT  312 (342)
Q Consensus       297 ~~~~~~~i~~~~l~~~  312 (342)
                      ...+.++...+++|..
T Consensus       514 ~~~KV~L~F~~~FW~~  529 (808)
T PLN02328        514 LLNKVALLFPYNFWGG  529 (808)
T ss_pred             ceEEEEEEeCCccccC
Confidence            5777888888888864

>PLN02676 polyamine oxidase

Probab=99.70  E-value=2.9e-16  Score=147.46  Aligned_cols=267  Identities=14%  Similarity=0.213  Sum_probs=139.2

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (342)
                      ..+||+|||||++||+||++|+++|. +|+|+|+++++||++.+....+                    +.+|++.+++.
T Consensus        25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~~~g--------------------~~~d~g~~~~~   84 (487)
T PLN02676         25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKANFAG--------------------VSVELGANWVE   84 (487)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeecCCC--------------------eEEecCCEEEE
Confidence            35899999999999999999999997 6999999999999999875432                    33444444442


Q ss_pred             c-----ccHHHHHHhhcCCcceeeEEEcC--ceEEEe-CCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCC
Q 019351           82 A-----NGALVRVLIHTDVTKYLYFKAVD--GSFVYN-KGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND  153 (342)
Q Consensus        82 ~-----~~~l~~~l~~~~~~~~l~~~~~~--~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  153 (342)
                      .     ...+.+++.+.++..+.  ...+  ...++. +|+.+  +....+.+.         ..+..+..++..+....
T Consensus        85 ~~~~~~~~~~~~l~~~~g~~~~~--~~~~~~~~~~~~~~g~~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~~  151 (487)
T PLN02676         85 GVGGPESNPIWELANKLKLRTFY--SDFDNLSSNIYKQDGGLY--PKKVVQKSM---------KVADASDEFGENLSISL  151 (487)
T ss_pred             cccCcccChHHHHHHhcCCceee--cCccccceeEECCCCCCC--CHHHHHHHH---------HHHHHHHHHHHHHHHhh
Confidence            1     23555666666655431  1111  112221 44333  110000000         01112222211111100


Q ss_pred             cccccccCCCCCcH--HHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEe-CCC
Q 019351          154 PKTHEGMDLTRVTT--RELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP-LYG  230 (342)
Q Consensus       154 ~~~~~~~~~~~~s~--~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~gG  230 (342)
                          .....++.++  .+.+..+ .+..........+..  ...+..++...++..+.. ...+..+ |...+... ++|
T Consensus       152 ----~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~S~~~~~~-~~~~~~~-g~~~~~~~~~~G  222 (487)
T PLN02676        152 ----SAKKAVDISILTAQRLFGQ-VPKTPLEMVIDYYNY--DYEFAEPPRVTSLKNTEP-NPTFVDF-GEDEYFVADPRG  222 (487)
T ss_pred             ----cccCCCCccHHHHHHHHhh-CCCCHHHHHHHHHhc--cceeccCccccchhhcCc-ccccccC-CCceEEeecCCC
Confidence                0011245565  3334433 111111111111111  011112222111111100 0001111 23333332 689


Q ss_pred             CChHHHHHHHHHHHc------CcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC----------Ccc---
Q 019351          231 LGELPQAFARLSAVY------GGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL----------PNK---  291 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~------G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~----------~~~---  291 (342)
                      ++.+++.|++.....      +.+|++|++|++|..+ ++++.+.+.+|.+++||+||+|.+..          |..   
T Consensus       223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~-~~gV~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~  301 (487)
T PLN02676        223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYS-KNGVTVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDW  301 (487)
T ss_pred             HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEc-CCcEEEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHH
Confidence            999999999865332      3679999999999987 55554333467789999999998632          111   


Q ss_pred             ----cc--ccceeEEEEEEecCCCCCC
Q 019351          292 ----VR--KVGRVARAIAIMSHPIPNT  312 (342)
Q Consensus       292 ----~~--~~~~~~~~~~i~~~~l~~~  312 (342)
                          +.  .++...|.+....+|+|..
T Consensus       302 k~~ai~~l~~g~~~Kv~l~f~~~FW~~  328 (487)
T PLN02676        302 KIEAIYQFDMAVYTKIFLKFPYKFWPS  328 (487)
T ss_pred             HHHHHHhCCceeeEEEEEEeCCCCCCC
Confidence                01  1346777888888999864

>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]

Probab=99.70  E-value=2.5e-16  Score=138.68  Aligned_cols=73  Identities=25%  Similarity=0.389  Sum_probs=64.2

Q ss_pred             hccccC-CCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC
Q 019351          215 IARFQG-GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (342)
Q Consensus       215 ~~~~~g-~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~  288 (342)
                      ++..++ ...|.||+||++.++.++++.++..|++|.+++.|.+|..+ +|++++|.. +|.++.++.||++++.|
T Consensus       246 lg~~d~~~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd-~gka~GV~L~dG~ev~sk~VvSNAt~~  320 (561)
T KOG4254|consen  246 LGELDGHKGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLD-SGKAVGVRLADGTEVRSKIVVSNATPW  320 (561)
T ss_pred             HHhhcccCCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheecc-CCeEEEEEecCCcEEEeeeeecCCchH
Confidence            433334 56788999999999999999999999999999999999998 799999998 89999999999988765

>PLN03000 amine oxidase

Probab=99.66  E-value=5.2e-15  Score=143.75  Aligned_cols=263  Identities=14%  Similarity=0.141  Sum_probs=138.0

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   83 (342)
                      ..||+|||||++||+||..|++.|++|+|+|+++++||++.|....+.                ...+.+|++..++...
T Consensus       184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~----------------~~~~~~DlGas~i~g~  247 (881)
T PLN03000        184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEAN----------------RVGAAADLGGSVLTGT  247 (881)
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCC----------------CCceEeecCCeEEeCC
Confidence            479999999999999999999999999999999999999999875320                0113344444444332


Q ss_pred             c--HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccC
Q 019351           84 G--ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD  161 (342)
Q Consensus        84 ~--~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
                      .  ++..++.+.++..+ . ......+.+.+|+..  +......+        + .....+++.+..+......     .
T Consensus       248 ~~npl~~L~~qlgl~l~-~-~~~~~~ly~~~Gk~v--~~~~~~~v--------e-~~fn~lLd~~~~lr~l~~~-----~  309 (881)
T PLN03000        248 LGNPLGIIARQLGSSLY-K-VRDKCPLYRVDGKPV--DPDVDLKV--------E-VAFNQLLDKASKLRQLMGD-----V  309 (881)
T ss_pred             CccHHHHHHHHcCCcee-e-cCCCCeEEEeCCcCC--chhhhhhH--------H-HHHHHHHHHHHHHHHHhcc-----c
Confidence            2  33344444554422 1 111222333466543  21100000        0 0011111111110000000     0


Q ss_pred             CCCCcHHHHHHH---c---CCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHH
Q 019351          162 LTRVTTRELIAK---Y---GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELP  235 (342)
Q Consensus       162 ~~~~s~~~~l~~---~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~  235 (342)
                      ..+.|+.++++.   +   .+.++.+..+.+.+....   +........+. ...+... ..+.....+...+||++.++
T Consensus       310 ~~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanLE---~~~as~ls~LS-l~~wdqd-~~~e~~G~~~~v~GG~~~Li  384 (881)
T PLN03000        310 SMDVSLGAALETFRQVSGNDVATEEMGLFNWHLANLE---YANAGLVSKLS-LAFWDQD-DPYDMGGDHCFLPGGNGRLV  384 (881)
T ss_pred             CcCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHh---cccccCHHHHH-HHHhhhc-ccccCCCceEEeCCCHHHHH
Confidence            023455443321   1   223322222222121110   10111111111 1111110 01111234567889999999


Q ss_pred             HHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC----------Ccc-------cc--ccc
Q 019351          236 QAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL----------PNK-------VR--KVG  296 (342)
Q Consensus       236 ~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~----------~~~-------~~--~~~  296 (342)
                      ++|++.     ..|+++++|++|.++ ++++ .|++++++++||+||+|.+..          |..       +.  .++
T Consensus       385 eaLa~~-----L~I~Ln~~Vt~I~~~-~dgV-~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G  457 (881)
T PLN03000        385 QALAEN-----VPILYEKTVQTIRYG-SNGV-KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFG  457 (881)
T ss_pred             HHHHhh-----CCcccCCcEEEEEEC-CCeE-EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCc
Confidence            999974     359999999999987 5544 456666789999999987642          211       11  134


Q ss_pred             eeEEEEEEecCCCCCC
Q 019351          297 RVARAIAIMSHPIPNT  312 (342)
Q Consensus       297 ~~~~~~~i~~~~l~~~  312 (342)
                      .+.+.+..+.++.|.+
T Consensus       458 ~l~KViL~Fd~~FW~~  473 (881)
T PLN03000        458 LLNKVAMLFPYVFWST  473 (881)
T ss_pred             ceEEEEEEeCCccccC
Confidence            6788888889999875

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.64  E-value=2.7e-15  Score=133.72  Aligned_cols=46  Identities=28%  Similarity=0.380  Sum_probs=43.4

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccch
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNL   48 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~   48 (342)
                      +..||||||+|++||++|+.|+++|++|+|+|+++++|||+.+.+.
T Consensus         6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~   51 (450)
T COG1231           6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA   51 (450)
T ss_pred             CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec
Confidence            3589999999999999999999999999999999999999998865

>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.62  E-value=4.2e-15  Score=138.40  Aligned_cols=46  Identities=28%  Similarity=0.374  Sum_probs=43.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchH
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI   49 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~   49 (342)
                      +.+|||||||+|||+||.+|.+.|.+|+|||+++++|||.+|+...
T Consensus        15 ~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~   60 (501)
T KOG0029|consen   15 KKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSE   60 (501)
T ss_pred             CCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecC
Confidence            4799999999999999999999999999999999999999998753

>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]

Probab=99.61  E-value=3.4e-14  Score=124.77  Aligned_cols=229  Identities=16%  Similarity=0.171  Sum_probs=140.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCe--EEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLK--VLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~--V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   82 (342)
                      .+|+|||||++||++||+|++++-+  |+++|+.+++||+.+|..-                   .+.+.++.+|+.+..
T Consensus        12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~-------------------~ng~ifE~GPrtlrp   72 (491)
T KOG1276|consen   12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRM-------------------QNGFIFEEGPRTLRP   72 (491)
T ss_pred             ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccC-------------------CCceeeccCCCccCc
Confidence            6899999999999999999999855  5669999999999998322                   145778888888776


Q ss_pred             ccH----HHHHHhhcCCccee-eEEEc----CceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCC
Q 019351           83 NGA----LVRVLIHTDVTKYL-YFKAV----DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND  153 (342)
Q Consensus        83 ~~~----l~~~l~~~~~~~~l-~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  153 (342)
                      -++    ..+++.++++++.+ .+...    ...+++..|++..+|.+........+..+ .+.-...|+....+-....
T Consensus        73 ag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~-~k~L~~a~l~e~fr~~~~~  151 (491)
T KOG1276|consen   73 AGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPF-GKPLLEAFLRELFRKKVSD  151 (491)
T ss_pred             CCcchhHHHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccCcc-cchhHHHHHhhhccccCCC
Confidence            665    66677777776543 22221    23566778999988876444333333222 2112222222111110011


Q ss_pred             cccccccCCCCCcHHHHHHHcCCChhHHHH-HHhhhhcccCCCCCCCc----hHHHHHHHHHHHHhhc------------
Q 019351          154 PKTHEGMDLTRVTTRELIAKYGLDDNTIDF-IGHALALHRDDRYLNEP----ALDTVKRMKLYAESIA------------  216 (342)
Q Consensus       154 ~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~~~------------  216 (342)
                             +..++|+.+|.++. |.+++.+. +.+++    .+.|..++    ....+..+......++            
T Consensus       152 -------~~~dESV~sF~~Rr-fG~eV~d~~isp~i----~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~  219 (491)
T KOG1276|consen  152 -------PSADESVESFARRR-FGKEVADRLISPFI----RGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFA  219 (491)
T ss_pred             -------CCccccHHHHHHHh-hhHHHHHHHHHHHh----CccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence                   12579999999887 55776654 44444    34444444    2333332222111111            


Q ss_pred             cc--------------cCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCc
Q 019351          217 RF--------------QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGK  265 (342)
Q Consensus       217 ~~--------------~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~  265 (342)
                      .-              ...-+.+-.+||...+++++.+.+.+..+.|.+.-++..+.....++
T Consensus       220 ~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk~~~~~  282 (491)
T KOG1276|consen  220 RKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSKSRSGN  282 (491)
T ss_pred             hhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccccccCC
Confidence            00              00001133578899999999999988889999999999887653443

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=99.56  E-value=4.5e-14  Score=128.25  Aligned_cols=86  Identities=20%  Similarity=0.233  Sum_probs=62.5

Q ss_pred             eEEeCCC---CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccc----cc--
Q 019351          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV----RK--  294 (342)
Q Consensus       224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~----~~--  294 (342)
                      +.++.+|   ...+++.|.+.+++.|++|+.+++|++|..+ ++++.+|.++++++.||+||+|+|++...+    ..  
T Consensus       136 ~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~-~~~v~gv~~~~g~i~ad~vV~a~G~~s~~l~~~~~~~~  214 (358)
T PF01266_consen  136 VFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVD-GGRVTGVRTSDGEIRADRVVLAAGAWSPQLLPLLGLDL  214 (358)
T ss_dssp             EEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEE-TTEEEEEEETTEEEEECEEEE--GGGHHHHHHTTTTSS
T ss_pred             hcccccccccccchhhhhHHHHHHhhhhccccccccchhhc-ccccccccccccccccceeEecccccceeeeecccccc
Confidence            3455566   6899999999999999999999999999988 777777888766799999999999885331    11  


Q ss_pred             cceeEEEEEEecCCCC
Q 019351          295 VGRVARAIAIMSHPIP  310 (342)
Q Consensus       295 ~~~~~~~~~i~~~~l~  310 (342)
                      .....+..++...+..
T Consensus       215 ~~~~~~~~~~~~~~~~  230 (358)
T PF01266_consen  215 PLRPVRGQVLVLEPPE  230 (358)
T ss_dssp             TEEEEEEEEEEEEGCC
T ss_pred             cccccceEEEEEccCC
Confidence            2345555555554443

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=99.55  E-value=2.5e-13  Score=127.55  Aligned_cols=84  Identities=17%  Similarity=0.175  Sum_probs=60.1

Q ss_pred             eEEeCCC---CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccc-cc---cc
Q 019351          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV-RK---VG  296 (342)
Q Consensus       224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~-~~---~~  296 (342)
                      .+.+.+|   ..+++.+|++.+++.|++|+.+++|++|+..  + .+.|+++++++.||+||+|++.+...+ ..   ..
T Consensus       172 ~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~--~-~~~v~t~~g~v~A~~VV~Atga~s~~l~~~~~~~~  248 (460)
T TIGR03329       172 FYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEG--Q-PAVVRTPDGQVTADKVVLALNAWMASHFPQFERSI  248 (460)
T ss_pred             EEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeC--C-ceEEEeCCcEEECCEEEEcccccccccChhhcCeE
Confidence            3445555   5688999999999999999999999999742  3 355777767899999999988764321 11   11


Q ss_pred             eeEEEEEEecCCCC
Q 019351          297 RVARAIAIMSHPIP  310 (342)
Q Consensus       297 ~~~~~~~i~~~~l~  310 (342)
                      .+.+..+++++|++
T Consensus       249 ~p~~~~~~~t~pl~  262 (460)
T TIGR03329       249 AIVSSDMVITEPAP  262 (460)
T ss_pred             EEeccceEecCCCc
Confidence            23445566777765

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=99.54  E-value=1.7e-13  Score=120.41  Aligned_cols=62  Identities=21%  Similarity=0.290  Sum_probs=51.0

Q ss_pred             EeC-CCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCC--CCC
Q 019351          226 YPL-YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS--YLP  289 (342)
Q Consensus       226 ~~~-gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~--~~~  289 (342)
                      ||. .....++++|.+.+++.|++|+++++|.+|+++ + ....+.+ +|.+++||.+|+|+|  .+|
T Consensus       104 Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~-~-~~f~l~t~~g~~i~~d~lilAtGG~S~P  169 (408)
T COG2081         104 FPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKD-D-SGFRLDTSSGETVKCDSLILATGGKSWP  169 (408)
T ss_pred             cCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEec-C-ceEEEEcCCCCEEEccEEEEecCCcCCC
Confidence            555 456889999999999999999999999999987 4 3456777 455899999999887  445

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=99.54  E-value=1.1e-13  Score=127.52  Aligned_cols=57  Identities=14%  Similarity=0.180  Sum_probs=48.4

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      ...++++|.+.+++.|++++++++|+++..+ +++ +.|.++++++.||+||+|+|.++
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g~i~ad~vV~A~G~~s  204 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEH-ANG-VVVRTTQGEYEARTLINCAGLMS  204 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEec-CCe-EEEEECCCEEEeCEEEECCCcch
Confidence            4688899999999999999999999999876 554 45666666899999999999875

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=99.53  E-value=1.1e-13  Score=125.22  Aligned_cols=58  Identities=24%  Similarity=0.273  Sum_probs=48.8

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcE-EEcCEEEECCCCCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGET-AKCKKVVCDPSYLP  289 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~-~~a~~vI~~~~~~~  289 (342)
                      +..++.+|++.++++|+++++|++|+.|+++ +++++.+.+ +|++ ++|+.||.|+|...
T Consensus       152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~-~dg~~~~~~~~g~~~~~ak~Vin~AGl~A  211 (429)
T COG0579         152 PGELTRALAEEAQANGVELRLNTEVTGIEKQ-SDGVFVLNTSNGEETLEAKFVINAAGLYA  211 (429)
T ss_pred             HHHHHHHHHHHHHHcCCEEEecCeeeEEEEe-CCceEEEEecCCcEEEEeeEEEECCchhH
Confidence            6789999999999999999999999999987 443565665 5655 99999999998654

>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]

Probab=99.53  E-value=9.3e-13  Score=117.66  Aligned_cols=46  Identities=20%  Similarity=0.454  Sum_probs=42.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCCCCCcCcccchH
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSLNLI   49 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~~GG~~~t~~~~   49 (342)
                      ...|+|||||+|||+||.+|-+.| .+|+|+|+.+++|||.+|+.+.
T Consensus        21 ~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~   67 (498)
T KOG0685|consen   21 NAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFA   67 (498)
T ss_pred             CceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcC
Confidence            467999999999999999999777 6899999999999999999764

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=99.52  E-value=5e-14  Score=128.57  Aligned_cols=61  Identities=18%  Similarity=0.231  Sum_probs=45.9

Q ss_pred             EEeCC-CCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCC
Q 019351          225 IYPLY-GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (342)
Q Consensus       225 ~~~~g-G~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~  286 (342)
                      .||.- -...+.+.|.+.++++|++|+++++|++|..+ ++++..|.+ +++++.||+||+|+|
T Consensus       101 ~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~-~~~~f~v~~~~~~~~~a~~vILAtG  163 (409)
T PF03486_consen  101 VFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKK-EDGVFGVKTKNGGEYEADAVILATG  163 (409)
T ss_dssp             EEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEE-TTEEEEEEETTTEEEEESEEEE---
T ss_pred             ECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeec-CCceeEeeccCcccccCCEEEEecC
Confidence            46644 35678899999999999999999999999987 677788888 889999999999976

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=1.1e-13  Score=125.76  Aligned_cols=251  Identities=18%  Similarity=0.187  Sum_probs=132.3

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhc-ccc
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII-ANG   84 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~   84 (342)
                      .|+|+|||++||+||++|+++|++|+|+|+++++||.+.++...+                   ....+.+-++|. ...
T Consensus         2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~d-------------------g~~~E~glh~f~~~Y~   62 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSD-------------------GNHVEHGLHVFFGCYY   62 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCC-------------------CCeeeeeeEEechhHH
Confidence            699999999999999999999999999999999999999987531                   123334433333 334


Q ss_pred             HHHHHHhhcCCcceeeEEEcCceEEEe---CCeEEecCC-------Cc-HHHhcCCCCChhhHHHHHHHHHHHhhcCCCC
Q 019351           85 ALVRVLIHTDVTKYLYFKAVDGSFVYN---KGKVHKVPA-------TD-MEALKSPLMGIFEKRRARKFFIYVQDYDEND  153 (342)
Q Consensus        85 ~l~~~l~~~~~~~~l~~~~~~~~~~~~---~g~~~~~~~-------~~-~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  153 (342)
                      +++.++.+......+.+......+.-.   .|.+-++..       .. ...+....+   ..+...+|.--......  
T Consensus        63 n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~--  137 (485)
T COG3349          63 NLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQL---PRREKIRFVLRLGDAPI--  137 (485)
T ss_pred             HHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhcccc---CHHHHhHHhhccccccc--
Confidence            777777777666544433322222111   222211111       10 111222212   11222222211111100  


Q ss_pred             cccccccCCCCCcHHHHHHHcCCChhHHH-HHHh-hhhcc--cCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCC
Q 019351          154 PKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGH-ALALH--RDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY  229 (342)
Q Consensus       154 ~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~-~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g  229 (342)
                      .+..-..++++.|+.||+++.+.+..... .+.+ ..++.  ...+.   ++...+..+..+.  +... +.+-....++
T Consensus       138 g~~~~~~eld~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~---sa~~~lt~~~~~~--~~~~-~~~i~~~~~g  211 (485)
T COG3349         138 GADRSLRELDKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGC---SARFFLTILNLFL--IVTL-EASILRNLRG  211 (485)
T ss_pred             hhHHHHHHHhcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccC---cchhHHHHHHHHH--Hhcc-CcchhhhhcC
Confidence            01112235689999999999776655432 2222 12221  11111   1111111221111  1111 2222234455


Q ss_pred             C-CChHHHHHHHHHHHcCcEEEcCCccceEEEcC---CCcEEEEEeCCcE---EEcCEEEECCC
Q 019351          230 G-LGELPQAFARLSAVYGGTYMLNKPECKVEFDE---EGKVVGVTSEGET---AKCKKVVCDPS  286 (342)
Q Consensus       230 G-~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~---~~~~~~v~~~g~~---~~a~~vI~~~~  286 (342)
                      + ...+...+.++..+.|.+++...+|+.|..+.   +.+++++...+..   +.++.++.+.+
T Consensus       212 ~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~  275 (485)
T COG3349         212 SPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGPEQEQQAALAVVDAFA  275 (485)
T ss_pred             CCcceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCcceEeeehhhhhcccc
Confidence            5 44566677888888999999999999998763   3345666554432   33444444443

>PLN02976 amine oxidase

Probab=99.51  E-value=5.4e-13  Score=133.88  Aligned_cols=44  Identities=20%  Similarity=0.304  Sum_probs=41.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN   47 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~   47 (342)
                      ..||+|||||++|+++|+.|+++|++|+|||+++.+||++.+..
T Consensus       693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~  736 (1713)
T PLN02976        693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDR  736 (1713)
T ss_pred             CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeecc
Confidence            37899999999999999999999999999999999999998764

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=99.50  E-value=1e-12  Score=120.69  Aligned_cols=57  Identities=18%  Similarity=0.122  Sum_probs=47.3

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      ...+++.|.+.+++.|++++.+++|++|..+ ++++ .|+++++++.||+||+|+|.+.
T Consensus       144 p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~-~~~~-~v~~~~~~i~a~~vV~aaG~~~  200 (380)
T TIGR01377       144 AEKALRALQELAEAHGATVRDGTKVVEIEPT-ELLV-TVKTTKGSYQANKLVVTAGAWT  200 (380)
T ss_pred             HHHHHHHHHHHHHHcCCEEECCCeEEEEEec-CCeE-EEEeCCCEEEeCEEEEecCcch
Confidence            4578889999999999999999999999876 5554 4666666899999999998774

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=99.50  E-value=1.8e-12  Score=123.78  Aligned_cols=60  Identities=15%  Similarity=0.052  Sum_probs=49.9

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CC--cEEEcCEEEECCCCCCcc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~~~~~  291 (342)
                      ...++.++++.|+++|++++++++|++|..+ ++++++|++    ++  .+|.|++||+|+|.|.+.
T Consensus       148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~  213 (546)
T PRK11101        148 PFRLTAANMLDAKEHGAQILTYHEVTGLIRE-GDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQH  213 (546)
T ss_pred             HHHHHHHHHHHHHhCCCEEEeccEEEEEEEc-CCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHH
Confidence            4578888999999999999999999999887 677776664    23  479999999999998643

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.46  E-value=2e-13  Score=127.16  Aligned_cols=64  Identities=11%  Similarity=0.196  Sum_probs=48.0

Q ss_pred             chHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc-cHHHHHHhh
Q 019351           14 LKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN-GALVRVLIH   92 (342)
Q Consensus        14 iaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~-~~l~~~l~~   92 (342)
                      +|||+||++|+++|++|+|||+++++||+++|.+.+.                  ..+.+|.+++.+... ..+.+++.+
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~~~------------------~g~~~e~G~~~~~~~~~~~~~~~~~   62 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRFDN------------------PGFTFELGAHRFFGMYPNLLNLIDE   62 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEETT------------------TTEEEESSS-EEETTSHHHHHHHHH
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecCCc------------------cceeecCCcccccccchhhHHHHHH
Confidence            6899999999999999999999999999999997641                  137788888877643 334455554


Q ss_pred             cCC
Q 019351           93 TDV   95 (342)
Q Consensus        93 ~~~   95 (342)
                      .++
T Consensus        63 l~~   65 (450)
T PF01593_consen   63 LGL   65 (450)
T ss_dssp             HTH
T ss_pred             hhh
Confidence            444

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=99.46  E-value=1.5e-12  Score=121.93  Aligned_cols=59  Identities=14%  Similarity=0.155  Sum_probs=50.2

Q ss_pred             CChHHHHHHHHHHH----cC--cEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAV----YG--GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~----~G--~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      +..++.+|++.+++    .|  ++|+++++|++|+.+ +++.+.|+++.+++.||+||+|+|.|..
T Consensus       210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~-~~~~~~V~T~~G~i~A~~VVvaAG~~S~  274 (497)
T PTZ00383        210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERS-NDSLYKIHTNRGEIRARFVVVSACGYSL  274 (497)
T ss_pred             HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEec-CCCeEEEEECCCEEEeCEEEECcChhHH
Confidence            46889999999998    77  789999999999876 5666778887778999999999987753

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=99.44  E-value=4.7e-12  Score=117.67  Aligned_cols=59  Identities=17%  Similarity=0.273  Sum_probs=51.1

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ...++..|++.++++|++|+++++|++|+.+ +++++.|+++++++.||+||+|+|.+..
T Consensus       200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~t~~~~~~a~~VV~a~G~~~~  258 (416)
T PRK00711        200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVE-GGRITGVQTGGGVITADAYVVALGSYST  258 (416)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCEEEEEEeCCcEEeCCEEEECCCcchH
Confidence            4578899999999999999999999999876 6666778887779999999999998753

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.44  E-value=2.2e-12  Score=116.34  Aligned_cols=93  Identities=17%  Similarity=0.268  Sum_probs=63.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcccc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG   84 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   84 (342)
                      +||+|||||++||++|++|++.|.+|+|+|+++.+||.+.+....                   .....+.+++.+....
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~~~-------------------g~~~~~~G~h~f~t~~   62 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEVDE-------------------TILFHQYGPHIFHTNN   62 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeecCC-------------------CceEEeecceeEecCc
Confidence            699999999999999999999999999999999999988765322                   1122356666665544


Q ss_pred             HHH-HHHhhc-CCcceeeEEEcCceEEEeCCeEEecCCC
Q 019351           85 ALV-RVLIHT-DVTKYLYFKAVDGSFVYNKGKVHKVPAT  121 (342)
Q Consensus        85 ~l~-~~l~~~-~~~~~l~~~~~~~~~~~~~g~~~~~~~~  121 (342)
                      .-+ +.+.+. +...+   .  .....+.+|+.+.+|.+
T Consensus        63 ~~v~~~~~~~~~~~~~---~--~~~~~~~~g~~~~~P~~   96 (377)
T TIGR00031        63 QYVWDYISPFFELNNY---Q--HRVLALYNNLDLTLPFN   96 (377)
T ss_pred             HHHHHHHHhhccccce---e--EEEEEEECCeEEccCCC
Confidence            332 322221 11111   1  12234568999999974

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=99.44  E-value=4.6e-12  Score=117.38  Aligned_cols=58  Identities=19%  Similarity=0.133  Sum_probs=47.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      ..++.+|++.++++|++++.+++|++|+.+++++++.|+++.+++.|++||+|++.+.
T Consensus       183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~~  240 (407)
T TIGR01373       183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGHS  240 (407)
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChhh
Confidence            4677888999999999999999999997542466777888766899999988776553

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=99.44  E-value=5.9e-12  Score=116.42  Aligned_cols=107  Identities=21%  Similarity=0.157  Sum_probs=72.1

Q ss_pred             ceEEeCCC--CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC----Cc--EEEcCEEEECCCCCCcccc-
Q 019351          223 PYIYPLYG--LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE----GE--TAKCKKVVCDPSYLPNKVR-  293 (342)
Q Consensus       223 ~~~~~~gG--~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~----g~--~~~a~~vI~~~~~~~~~~~-  293 (342)
                      .+.|+.+=  ...|+...++.|..+|++++..++|+++.++ ++ +++|+..    |+  +++|+.||.|+|+|.+.+. 
T Consensus       153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re-~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~  230 (532)
T COG0578         153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRRE-GG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILE  230 (532)
T ss_pred             eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeec-CC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHH
Confidence            45566542  4588889999999999999999999999987 66 8888862    32  4899999999999964421 


Q ss_pred             ---------ccceeEEEEEEecCCCCCCCCCCeEEEEecCCCCCCcCceEEe
Q 019351          294 ---------KVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQKP  336 (342)
Q Consensus       294 ---------~~~~~~~~~~i~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~  336 (342)
                               ...++.++++++-....+.    ...++++... .++.+|.+|
T Consensus       231 ~~~~~~~~~~~vr~skGsHlVv~~~~~~----~~a~~~~~~~-d~r~~f~iP  277 (532)
T COG0578         231 MAGLEQSPHIGVRPSKGSHLVVDKKFPI----NQAVINRCRK-DGRIVFAIP  277 (532)
T ss_pred             hhcccCCCCccceeccceEEEecccCCC----CceEEeecCC-CCceEEEec
Confidence                     1235566666554333221    1235555544 445555555

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=99.44  E-value=2.6e-12  Score=117.31  Aligned_cols=74  Identities=20%  Similarity=0.156  Sum_probs=53.5

Q ss_pred             CChHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccc-c----c-cceeEEEEE
Q 019351          231 LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV-R----K-VGRVARAIA  303 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~-~----~-~~~~~~~~~  303 (342)
                      ...++.+|++++.+. |++|+.+++|++|+.   +   .|+++++++.||+||+|+|.+...+ .    . ...+.|..+
T Consensus       144 p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~---~---~v~t~~g~i~a~~VV~A~G~~s~~l~~~~~~~~~~~p~~~q~  217 (365)
T TIGR03364       144 PREAIPALAAYLAEQHGVEFHWNTAVTSVET---G---TVRTSRGDVHADQVFVCPGADFETLFPELFAASGVRRCKLQM  217 (365)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeCCeEEEEec---C---eEEeCCCcEEeCEEEECCCCChhhhCcchhhccCcceEEEEe
Confidence            457888999888775 999999999999952   2   4666666789999999999875321 1    1 124566676


Q ss_pred             EecCCCC
Q 019351          304 IMSHPIP  310 (342)
Q Consensus       304 i~~~~l~  310 (342)
                      +.++|+.
T Consensus       218 ~~~~p~~  224 (365)
T TIGR03364       218 MRTAPQP  224 (365)
T ss_pred             eeccCCC
Confidence            6766654

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.43  E-value=2e-13  Score=92.02  Aligned_cols=41  Identities=24%  Similarity=0.495  Sum_probs=38.2

Q ss_pred             EECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchH
Q 019351            9 VLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI   49 (342)
Q Consensus         9 IiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~   49 (342)
                      |||||++||++|++|+++|++|+|+|+++++||++.+...+
T Consensus         1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~   41 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRIP   41 (68)
T ss_dssp             EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEET
T ss_pred             CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEEC
Confidence            89999999999999999999999999999999999988763

...

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=99.43  E-value=4.3e-12  Score=116.31  Aligned_cols=58  Identities=26%  Similarity=0.271  Sum_probs=47.7

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ...++..+.+.+.+.|++++++++|++|..+ ++. +.|++++++++||+||+|+|.+..
T Consensus       148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~~a~~vV~A~G~~~~  205 (376)
T PRK11259        148 PELAIKAHLRLAREAGAELLFNEPVTAIEAD-GDG-VTVTTADGTYEAKKLVVSAGAWVK  205 (376)
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEee-CCe-EEEEeCCCEEEeeEEEEecCcchh
Confidence            3567888888888899999999999999876 554 456776668999999999998753

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=99.42  E-value=3.5e-12  Score=117.39  Aligned_cols=84  Identities=26%  Similarity=0.277  Sum_probs=61.4

Q ss_pred             EEeCCC---CChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccc-------c
Q 019351          225 IYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV-------R  293 (342)
Q Consensus       225 ~~~~gG---~~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~-------~  293 (342)
                      +++..|   +..++.+|++.++++| ..+..+++|..++.+ . +.+.|.++++++.||+||+|+|.+...+       .
T Consensus       146 ~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~-~-~~~~v~t~~g~i~a~~vv~a~G~~~~~l~~~~~~~~  223 (387)
T COG0665         146 FDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERD-G-RVVGVETDGGTIEADKVVLAAGAWAGELAATLGELP  223 (387)
T ss_pred             ecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEec-C-cEEEEEeCCccEEeCEEEEcCchHHHHHHHhcCCCc
Confidence            344455   4688999999999999 677779999999875 4 6788888777799999999999874321       1


Q ss_pred             ccceeEEEEEEecCCCC
Q 019351          294 KVGRVARAIAIMSHPIP  310 (342)
Q Consensus       294 ~~~~~~~~~~i~~~~l~  310 (342)
                      ....+.+..++.++|..
T Consensus       224 ~~~~p~~~~~~~~~~~~  240 (387)
T COG0665         224 LPLRPVRGQALTTEPPE  240 (387)
T ss_pred             CccccccceEEEecCCC
Confidence            12345566666666554

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=99.42  E-value=5.5e-12  Score=116.96  Aligned_cols=59  Identities=17%  Similarity=0.166  Sum_probs=46.3

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC-----CcEEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-----GETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~-----g~~~~a~~vI~~~~~~~~  290 (342)
                      ...++.+|.+.+++.|++++++++|++|+.+ ++.+...+.+     +.+++||+||+|+|.+..
T Consensus       196 ~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~-~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~  259 (410)
T PRK12409        196 IHKFTTGLAAACARLGVQFRYGQEVTSIKTD-GGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSR  259 (410)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEcCCCCccceEecCEEEECCCcChH
Confidence            3467889999999999999999999999876 5554433222     237999999999998853

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.40  E-value=3.3e-12  Score=108.58  Aligned_cols=97  Identities=15%  Similarity=0.286  Sum_probs=69.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   83 (342)
                      .+|++|||+|++|++.|..|++.|++|+|+||++.+||.+.+...+.                 .+......+|++|+.+
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~-----------------tGIlvHkYGpHIFHT~   63 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQ-----------------TGILVHKYGPHIFHTD   63 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCC-----------------CCeEEeeccCceeecC
Confidence            37999999999999999999999999999999999999998775421                 1234456789999887


Q ss_pred             cHHHHHHhhcCCcceeeEEEcCce-EEEeCCeEEecCCC
Q 019351           84 GALVRVLIHTDVTKYLYFKAVDGS-FVYNKGKVHKVPAT  121 (342)
Q Consensus        84 ~~l~~~l~~~~~~~~l~~~~~~~~-~~~~~g~~~~~~~~  121 (342)
                      ++-+....    ..+.||...... ....+|..+.+|-+
T Consensus        64 ~~~Vwdyv----~~F~e~~~Y~hrVla~~ng~~~~lP~n   98 (374)
T COG0562          64 NKRVWDYV----NQFTEFNPYQHRVLALVNGQLYPLPFN   98 (374)
T ss_pred             chHHHHHH----hhhhhhhhhccceeEEECCeeeecccc
Confidence            74443222    223333332222 23458999999864

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=99.40  E-value=1.1e-11  Score=116.74  Aligned_cols=59  Identities=25%  Similarity=0.317  Sum_probs=48.1

Q ss_pred             CCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC-----CcEEEcCEEEECCCC
Q 019351          228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-----GETAKCKKVVCDPSY  287 (342)
Q Consensus       228 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~-----g~~~~a~~vI~~~~~  287 (342)
                      .++...++..|.+.+++.|++|+++++|++|..+ ++++++|.+.     ...++|+.||+|+|-
T Consensus       127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg  190 (466)
T PRK08274        127 WGGGKALVNALYRSAERLGVEIRYDAPVTALELD-DGRFVGARAGSAAGGAERIRAKAVVLAAGG  190 (466)
T ss_pred             cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCeEEEEEEEccCCceEEEECCEEEECCCC
Confidence            3445678889999999999999999999999886 7788877652     246899999999873

>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]

Probab=99.38  E-value=1.7e-11  Score=104.86  Aligned_cols=58  Identities=17%  Similarity=0.208  Sum_probs=46.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcC-CCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      .+-..+|...++++|+.++.+..|+.++..+ ++..+.|.| +|..+.|+++|+|+|.|.
T Consensus       153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi  212 (399)
T KOG2820|consen  153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWI  212 (399)
T ss_pred             HHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHH
Confidence            4567788889999999999999999987532 344455555 787899999999999874

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=99.38  E-value=1.5e-11  Score=114.34  Aligned_cols=56  Identities=18%  Similarity=0.248  Sum_probs=46.2

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      .+-+.|.+.+++.|++|+.+++|+++..+ ++++.+++++++++.|+.||.|.|..+
T Consensus       109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~-~g~v~~v~~~g~~i~A~~VI~A~G~~s  164 (428)
T PRK10157        109 KFDAWLMEQAEEAGAQLITGIRVDNLVQR-DGKVVGVEADGDVIEAKTVILADGVNS  164 (428)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEe-CCEEEEEEcCCcEEECCEEEEEeCCCH
Confidence            34556777788889999999999999876 677767777888999999999998763

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=99.35  E-value=9.9e-12  Score=121.77  Aligned_cols=64  Identities=20%  Similarity=0.170  Sum_probs=50.2

Q ss_pred             eEEeCCC---CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC-CcEEEcCEEEECCCCCCc
Q 019351          224 YIYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~-g~~~~a~~vI~~~~~~~~  290 (342)
                      ++++.+|   ...++.+|.+.+++ |++++.+++|++|+.+ ++++. |.++ +..+.||+||+|+|.+..
T Consensus       397 ~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~-~~~~~-v~t~~g~~~~ad~VV~A~G~~s~  464 (662)
T PRK01747        397 IFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLERE-DDGWQ-LDFAGGTLASAPVVVLANGHDAA  464 (662)
T ss_pred             EEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEe-CCEEE-EEECCCcEEECCEEEECCCCCcc
Confidence            3455555   45889999999988 9999999999999876 55544 6664 445789999999998753

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=99.34  E-value=1.2e-11  Score=117.28  Aligned_cols=44  Identities=32%  Similarity=0.483  Sum_probs=40.2

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |++.+||+|||||++|+++|+.|+++|++|+|+|+++..+|.++
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~rGl~V~LvEk~d~~~GtS~   46 (508)
T PRK12266          3 MMETYDLLVIGGGINGAGIARDAAGRGLSVLLCEQDDLASATSS   46 (508)
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccc
Confidence            56679999999999999999999999999999999988777664

>PRK10015 oxidoreductase; Provisional

Probab=99.34  E-value=4.3e-11  Score=111.18  Aligned_cols=55  Identities=13%  Similarity=0.124  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~  288 (342)
                      .+-+.|.+.+++.|++++.+++|+.+..+ ++++.++.+++.+++|+.||.|.|..
T Consensus       109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~-~~~v~~v~~~~~~i~A~~VI~AdG~~  163 (429)
T PRK10015        109 RLDPWLMEQAEQAGAQFIPGVRVDALVRE-GNKVTGVQAGDDILEANVVILADGVN  163 (429)
T ss_pred             HHHHHHHHHHHHcCCEEECCcEEEEEEEe-CCEEEEEEeCCeEEECCEEEEccCcc
Confidence            34455777788889999999999999876 66777777777789999999998865

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=99.33  E-value=4.2e-11  Score=112.43  Aligned_cols=66  Identities=12%  Similarity=0.048  Sum_probs=49.3

Q ss_pred             EEeCCC---CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE--e-CC--cEEEcCEEEECCCCCCc
Q 019351          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT--S-EG--ETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       225 ~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~--~-~g--~~~~a~~vI~~~~~~~~  290 (342)
                      +.|.+|   +..++.+|++.+++.|++|+++++|++|+.++++.+...+  + ++  .++.||+||+|+|.+..
T Consensus       168 ~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~  241 (483)
T TIGR01320       168 WAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGAL  241 (483)
T ss_pred             EeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchH
Confidence            345554   5789999999999999999999999999875233333221  2 23  36999999999998853

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=99.33  E-value=3.9e-11  Score=116.09  Aligned_cols=76  Identities=24%  Similarity=0.249  Sum_probs=56.7

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcC-CCcEEEEEe----CCc--EEEcCEEEECCCCCCcccc-------c-c
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS----EGE--TAKCKKVVCDPSYLPNKVR-------K-V  295 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~~v~~----~g~--~~~a~~vI~~~~~~~~~~~-------~-~  295 (342)
                      ...++.+|++.++++|++++.+++|++|..++ ++++++|+.    +++  ++.||.||+|+|.|.+.+.       . .
T Consensus       231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~~~~~  310 (627)
T PLN02464        231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMADGKAKPM  310 (627)
T ss_pred             HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhccCcCCCc
Confidence            56889999999999999999999999998753 356666553    344  6899999999999854321       1 1


Q ss_pred             ceeEEEEEEec
Q 019351          296 GRVARAIAIMS  306 (342)
Q Consensus       296 ~~~~~~~~i~~  306 (342)
                      ..+.++++++.
T Consensus       311 I~p~kG~hlvl  321 (627)
T PLN02464        311 ICPSSGVHIVL  321 (627)
T ss_pred             eEeeeeEEEec
Confidence            34667776664

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=99.33  E-value=9.6e-12  Score=117.94  Aligned_cols=59  Identities=15%  Similarity=0.093  Sum_probs=46.9

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC----cEEEcCEEEECCCCCCcc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG----ETAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g----~~~~a~~vI~~~~~~~~~  291 (342)
                      ...++..++..++++|++++.+++|+++..+ ++ .+.|++ ++    .+++|+.||.|+|.|.+.
T Consensus       154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~-~~-~~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~  217 (502)
T PRK13369        154 DARLVVLNALDAAERGATILTRTRCVSARRE-GG-LWRVETRDADGETRTVRARALVNAAGPWVTD  217 (502)
T ss_pred             HHHHHHHHHHHHHHCCCEEecCcEEEEEEEc-CC-EEEEEEEeCCCCEEEEEecEEEECCCccHHH
Confidence            3577888889999999999999999999876 44 345554 32    359999999999998643

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=99.32  E-value=1.1e-10  Score=109.81  Aligned_cols=66  Identities=15%  Similarity=0.103  Sum_probs=48.6

Q ss_pred             EEeCCC---CChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEE--e-CCc--EEEcCEEEECCCCCCc
Q 019351          225 IYPLYG---LGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVT--S-EGE--TAKCKKVVCDPSYLPN  290 (342)
Q Consensus       225 ~~~~gG---~~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~--~-~g~--~~~a~~vI~~~~~~~~  290 (342)
                      +.|.+|   +..++++|++.+++.| ++|+++++|++|+.++++.+...+  + +|.  ++.|++||+|+|.+..
T Consensus       173 ~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~  247 (494)
T PRK05257        173 RIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGAL  247 (494)
T ss_pred             EcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchH
Confidence            344444   5689999999999887 799999999999875344343222  2 243  6999999999988753

>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]

Probab=99.30  E-value=2.7e-11  Score=112.04  Aligned_cols=79  Identities=19%  Similarity=0.165  Sum_probs=62.4

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccccc------cceeEEEEEE
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRK------VGRVARAIAI  304 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~~------~~~~~~~~~i  304 (342)
                      +..++++|+++|...|+.|.++++|++|... .++..+|+|.-+.|+|.+||.|+|.|...+..      .-.+..-..|
T Consensus       186 P~~lC~ala~~A~~~GA~viE~cpV~~i~~~-~~~~~gVeT~~G~iet~~~VNaaGvWAr~Vg~m~gvkvPL~p~~H~Yv  264 (856)
T KOG2844|consen  186 PAGLCQALARAASALGALVIENCPVTGLHVE-TDKFGGVETPHGSIETECVVNAAGVWAREVGAMAGVKVPLVPMHHAYV  264 (856)
T ss_pred             HHHHHHHHHHHHHhcCcEEEecCCcceEEee-cCCccceeccCcceecceEEechhHHHHHhhhhcCCcccceeeeeeEE
Confidence            5689999999999999999999999999877 66677999988899999999999999754321      1223333446


Q ss_pred             ecCCCC
Q 019351          305 MSHPIP  310 (342)
Q Consensus       305 ~~~~l~  310 (342)
                      +++++.
T Consensus       265 vT~~Ie  270 (856)
T KOG2844|consen  265 VTSRIE  270 (856)
T ss_pred             EecccC
Confidence            666654

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=99.29  E-value=7.9e-11  Score=108.53  Aligned_cols=42  Identities=29%  Similarity=0.513  Sum_probs=39.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      +|||+|||||+||++||+.|+++|++|+|+|+++.+|....+
T Consensus         3 ~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644           3 EYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             eeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            589999999999999999999999999999999999987664

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=99.29  E-value=1.5e-10  Score=109.77  Aligned_cols=54  Identities=26%  Similarity=0.309  Sum_probs=44.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CC---cEEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EG---ETAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g---~~~~a~~vI~~~~  286 (342)
                      ..++..|.+.+++.|++|+++++|++|..+ ++++++|..  .+   .++.|+.||+|+|
T Consensus       190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~~g~~~~i~a~~VVlAtG  248 (506)
T PRK06481        190 GYLVDGLLKNVQERKIPLFVNADVTKITEK-DGKVTGVKVKINGKETKTISSKAVVVTTG  248 (506)
T ss_pred             HHHHHHHHHHHHHcCCeEEeCCeeEEEEec-CCEEEEEEEEeCCCeEEEEecCeEEEeCC
Confidence            357889999999999999999999999876 677777655  22   3689999999886

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=99.28  E-value=2.1e-10  Score=104.23  Aligned_cols=240  Identities=13%  Similarity=0.189  Sum_probs=124.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhC----CCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchh
Q 019351            5 YDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (342)
                      .++-|||+|+++|+||.+|-+-    |.+|.|||+.+.+||.+.......                  ..|..--+...-
T Consensus         3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~------------------~GYv~RgGR~~~   64 (500)
T PF06100_consen    3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPE------------------NGYVIRGGRMME   64 (500)
T ss_pred             ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCC------------------CCeeecCCcccc
Confidence            5788999999999999999986    479999999999999987553210                  112211111110


Q ss_pred             ccccHHHHHHhhc---CC------cceeeEEEcCce-----EEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHH
Q 019351           81 IANGALVRVLIHT---DV------TKYLYFKAVDGS-----FVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYV  146 (342)
Q Consensus        81 ~~~~~l~~~l~~~---~~------~~~l~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~  146 (342)
                      ....-+.++|...   ..      ..+..+....+.     .+..+|.....         ..-+.+ ..+..+.+++.+
T Consensus        65 ~~~eclwdLls~IPSle~p~~SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~---------~~~~~L-s~k~r~eL~kL~  134 (500)
T PF06100_consen   65 FHYECLWDLLSSIPSLEDPGKSVLDEIYWFNKEDPNYSKARLIDKRGQIVDT---------DSKFGL-SEKDRMELIKLL  134 (500)
T ss_pred             chhHHHHHHHHhCCCCCCCCCcHHHHHHHhccCCCCCcceeeeccCCccccc---------cCcCCC-CHHHHHHHHHHh
Confidence            0001222222110   00      000111111110     01112221110         111221 223333444443


Q ss_pred             hhcCCCCcccccccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEE
Q 019351          147 QDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIY  226 (342)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  226 (342)
                      ..-.         ..+.+.++.||+...-+..++..++....++   ..  ..++.+.-..+.+|++.+.....-+...+
T Consensus       135 l~~E---------~~L~~~~I~d~F~~~FF~SnFW~~W~T~FAF---qp--WhSa~E~rRyl~Rf~h~~~~l~~l~~l~~  200 (500)
T PF06100_consen  135 LTPE---------EDLGDKRIEDWFSESFFESNFWYMWSTMFAF---QP--WHSAVEFRRYLHRFIHEIPGLNDLSGLDR  200 (500)
T ss_pred             cCCH---------HHhCcccHHHhcchhhhcCchhHhHHHhhcc---Cc--chhHHHHHHHHHHHHHhcCCCCCcccccc
Confidence            3211         1246788999876554666555444332221   11  12344443444555444433322344445


Q ss_pred             eCCC-CChHHHHHHHHHHHcCcEEEcCCccceEEEcCC-C-c-EEEEEe--CCc--EEE---cCEEEECCC
Q 019351          227 PLYG-LGELPQAFARLSAVYGGTYMLNKPECKVEFDEE-G-K-VVGVTS--EGE--TAK---CKKVVCDPS  286 (342)
Q Consensus       227 ~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~-~-~-~~~v~~--~g~--~~~---a~~vI~~~~  286 (342)
                      .++. +..++..|.+.++++||++++++.|+.|+.+.+ + + +..+..  +|.  +|.   -|.|+++.|
T Consensus       201 T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~~~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~G  271 (500)
T PF06100_consen  201 TKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDITGDKKTATRIHIEQDGKEETIDLGPDDLVFVTNG  271 (500)
T ss_pred             CccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEccCCCeeEEEEEEEcCCCeeEEEeCCCCEEEEECC
Confidence            5554 889999999999999999999999999987532 2 2 222322  443  333   567888765

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=99.28  E-value=6.7e-11  Score=101.89  Aligned_cols=40  Identities=33%  Similarity=0.471  Sum_probs=37.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      ++||+|||||++||+||++|+++|++|+|+|+++.+||..
T Consensus        25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~   64 (257)
T PRK04176         25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM   64 (257)
T ss_pred             cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence            5899999999999999999999999999999999888754

>TIGR00292 thiazole biosynthesis enzyme

Probab=99.27  E-value=1.2e-10  Score=100.02  Aligned_cols=40  Identities=38%  Similarity=0.561  Sum_probs=37.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      ++||+|||||++||+||+.|+++|++|+|+||+..+||.+
T Consensus        21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            5899999999999999999999999999999999988764

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=99.26  E-value=1.8e-11  Score=101.68  Aligned_cols=44  Identities=18%  Similarity=0.283  Sum_probs=41.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchH
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI   49 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~   49 (342)
                      +|+|||+|++||+||+.|+.+|.+|+||||..-+|||..|.+..
T Consensus         3 siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl~   46 (331)
T COG3380           3 SIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRLD   46 (331)
T ss_pred             cEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheeccC
Confidence            69999999999999999999999999999999999999988754

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=99.22  E-value=1.1e-10  Score=107.53  Aligned_cols=56  Identities=11%  Similarity=0.039  Sum_probs=45.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+.+.|.+.+++.|++++.+++|++++.+ ++++. +++ +|.+++||.||.|.|.++
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vV~AdG~~S  169 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQD-ADRVR-LRLDDGRRLEAALAIAADGAAS  169 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEec-CCeEE-EEECCCCEEEeCEEEEecCCCc
Confidence            356777888888889999999999999876 55544 554 677899999999999876

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.22  E-value=9.3e-10  Score=105.31  Aligned_cols=57  Identities=19%  Similarity=0.184  Sum_probs=45.5

Q ss_pred             CCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCc--EEEcC-EEEECCC
Q 019351          228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCK-KVVCDPS  286 (342)
Q Consensus       228 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~--~~~a~-~vI~~~~  286 (342)
                      .+| ..++..|.+.+++.|++|+++++|++|..+ +++|++|..  +++  .+.|+ .||+|+|
T Consensus       214 ~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~a~kaVILAtG  275 (564)
T PRK12845        214 AGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDD-GGRVTGAVVDHRGREVTVTARRGVVLAAG  275 (564)
T ss_pred             CCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEec-CCEEEEEEEEECCcEEEEEcCCEEEEecC
Confidence            344 789999999999999999999999999876 788888765  443  35674 6888775

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=99.22  E-value=5.1e-10  Score=104.67  Aligned_cols=59  Identities=15%  Similarity=0.057  Sum_probs=45.0

Q ss_pred             CChHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEE---eCCc---EEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVT---SEGE---TAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~---~~g~---~~~a~~vI~~~~~~~~  290 (342)
                      ...+.++|++.+.+ .|++++++++|+.|+.++++.+. +.   ++.+   ++.||+||+|+|.|.+
T Consensus       183 ~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w~-v~v~~t~~g~~~~i~Ad~VV~AAGawS~  248 (497)
T PRK13339        183 FGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGWE-VTVKDRNTGEKREQVADYVFIGAGGGAI  248 (497)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCEE-EEEEecCCCceEEEEcCEEEECCCcchH
Confidence            56888999998865 49999999999999875234433 33   3333   6999999999998864

>PRK07121 hypothetical protein; Validated

Probab=99.21  E-value=1.1e-09  Score=103.99  Aligned_cols=58  Identities=26%  Similarity=0.361  Sum_probs=46.6

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCc--EEEc-CEEEECCCCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPSYL  288 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~--~~~a-~~vI~~~~~~  288 (342)
                      ...+...|.+.+++.|++|+++++|++|..++++++++|..  +++  .++| +.||+|+|-.
T Consensus       176 g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~  238 (492)
T PRK07121        176 GAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGF  238 (492)
T ss_pred             hHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCc
Confidence            45688899999999999999999999998763467887765  333  5889 9999988743

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=99.21  E-value=7.7e-10  Score=103.56  Aligned_cols=57  Identities=25%  Similarity=0.226  Sum_probs=45.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--C-Cc--EEEcCEEEECCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--E-GE--TAKCKKVVCDPSYL  288 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~-g~--~~~a~~vI~~~~~~  288 (342)
                      ..+...|.+.+++.|++|+++++|++|..++++++++|..  . +.  .+.++.||+|+|.+
T Consensus       130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~  191 (439)
T TIGR01813       130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGF  191 (439)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCC
Confidence            4688899999999999999999999998864567776654  2 32  37899999988744

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=99.20  E-value=6.3e-10  Score=103.47  Aligned_cols=57  Identities=25%  Similarity=0.321  Sum_probs=45.1

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYL  288 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~~  288 (342)
                      ...++..|.+.++++|++|+++++|++|..+ +++|++|..    +++  +++|+.||+|+|-.
T Consensus       140 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~  202 (417)
T PF00890_consen  140 GKALIEALAKAAEEAGVDIRFNTRVTDLITE-DGRVTGVVAENPADGEFVRIKAKAVILATGGF  202 (417)
T ss_dssp             HHHHHHHHHHHHHHTTEEEEESEEEEEEEEE-TTEEEEEEEEETTTCEEEEEEESEEEE----B
T ss_pred             HHHHHHHHHHHHhhcCeeeeccceeeeEEEe-CCceeEEEEEECCCCeEEEEeeeEEEeccCcc
Confidence            4568889999999999999999999999998 789988875    344  57899999988643

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06847 hypothetical protein; Provisional

Probab=99.19  E-value=2e-10  Score=105.25  Aligned_cols=56  Identities=21%  Similarity=0.242  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      .+.+.|.+.+++.|++|+++++|++++.+ ++++.....+|.++.||.||.|.|.++
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~~~v~~~~g~~~~ad~vI~AdG~~s  163 (375)
T PRK06847        108 ALARILADAARAAGADVRLGTTVTAIEQD-DDGVTVTFSDGTTGRYDLVVGADGLYS  163 (375)
T ss_pred             HHHHHHHHHHHHhCCEEEeCCEEEEEEEc-CCEEEEEEcCCCEEEcCEEEECcCCCc
Confidence            46667777777789999999999999876 555443334788899999999999875

>PRK06175 L-aspartate oxidase; Provisional

Probab=99.19  E-value=4.1e-10  Score=104.71  Aligned_cols=42  Identities=21%  Similarity=0.324  Sum_probs=37.6

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      |..++||+|||+|.+||+||..++ +|.+|+|+||.+..||.+
T Consensus         1 m~~~~DVvVVG~G~AGl~AA~~a~-~G~~V~lleK~~~~gg~s   42 (433)
T PRK06175          1 MNLYADVLIVGSGVAGLYSALNLR-KDLKILMVSKGKLNECNT   42 (433)
T ss_pred             CCccccEEEECchHHHHHHHHHhc-cCCCEEEEecCCCCCCch
Confidence            666799999999999999999985 799999999999887753

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=99.14  E-value=4.8e-10  Score=99.33  Aligned_cols=39  Identities=33%  Similarity=0.554  Sum_probs=32.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCCCCCcC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGES   43 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~~GG~~   43 (342)
                      ||+||||+|.+|+++|.+|+++| .+|+|||+++......
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~   40 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPED   40 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSG
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCcccc
Confidence            79999999999999999999998 7999999987655444

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=99.14  E-value=2.5e-09  Score=102.57  Aligned_cols=44  Identities=34%  Similarity=0.562  Sum_probs=41.0

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC--CCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~--~~GG~~~   44 (342)
                      |..++||+|||+|.+||+||..++++|.+|+||||.+  .+||.+.
T Consensus         1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834          1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            7778999999999999999999999999999999999  7888664

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.14  E-value=1.2e-09  Score=105.21  Aligned_cols=42  Identities=29%  Similarity=0.501  Sum_probs=38.8

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      +.++||+|||+|.+||+||+.++++|.+|+||||.+..||.+
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae~G~~VivlEk~~~~gG~t   50 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAARGLDTLVVEKSAHFGGST   50 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHHCCCcEEEEEcCCCCCchH
Confidence            457999999999999999999999999999999999988854

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=99.14  E-value=2.2e-09  Score=103.51  Aligned_cols=57  Identities=19%  Similarity=0.281  Sum_probs=47.0

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCc--EEEc-CEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~--~~~a-~~vI~~~~~~~  289 (342)
                      ..++..|.+.+++.|++|+++++|++|..+ ++++++|..  +++  +++| +.||+|+|-+.
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~-~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~  278 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLRE-DGRVAGAVVETPGGLQEIRARKGVVLAAGGFP  278 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEEECCcEEEEEeCCEEEEcCCCcc
Confidence            468899999999999999999999999877 778877754  344  4789 89999987664

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=99.13  E-value=1.4e-09  Score=96.12  Aligned_cols=56  Identities=18%  Similarity=0.192  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEE-EeCCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGV-TSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v-~~~g~~~~a~~vI~~~~~~~  289 (342)
                      .+.+.|.+.+++.|++++.+++|+++..+ ++++... ++++.+++||.||.|.|...
T Consensus        92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~a~~vv~a~G~~s  148 (295)
T TIGR02032        92 AFDEQLAERAQEAGAELRLGTTVLDVEIH-DDRVVVIVRGGEGTVTAKIVIGADGSRS  148 (295)
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEeeEEEe-CCEEEEEEcCccEEEEeCEEEECCCcch
Confidence            45667778888889999999999999876 4544332 23456899999999998763

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PRK08163 salicylate hydroxylase; Provisional

Probab=99.11  E-value=1.7e-09  Score=99.94  Aligned_cols=56  Identities=7%  Similarity=-0.008  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      .+.+.|.+.+.+.+ ++++.+++|+++..+ ++.+.....+|.++.||.||.|.|.++
T Consensus       110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vV~AdG~~S  166 (396)
T PRK08163        110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQD-GDGVTVFDQQGNRWTGDALIGCDGVKS  166 (396)
T ss_pred             HHHHHHHHHHHhcCCcEEEeCCEEEEEecC-CCceEEEEcCCCEEecCEEEECCCcCh
Confidence            46667777776664 899999999999876 555443334777899999999999774

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=99.11  E-value=5.7e-09  Score=100.67  Aligned_cols=41  Identities=24%  Similarity=0.442  Sum_probs=39.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||+|++||+||+.++++|.+|+|+||.+..||.+.
T Consensus         9 ~~DVvVVG~G~aGl~AA~~aa~~G~~v~llEk~~~~gG~~~   49 (574)
T PRK12842          9 TCDVLVIGSGAGGLSAAITARKLGLDVVVLEKEPVFGGTTA   49 (574)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCeEEEEecCCCCCCccc
Confidence            68999999999999999999999999999999999998875

>PRK07190 hypothetical protein; Provisional

Probab=99.11  E-value=1.5e-09  Score=102.28  Aligned_cols=55  Identities=13%  Similarity=0.163  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      +-..|.+.+++.|++|+.+++|++++.+ ++++.....+|++++|+.||.|.|..+
T Consensus       111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~-~~~v~v~~~~g~~v~a~~vVgADG~~S  165 (487)
T PRK07190        111 VEKLLDDKLKEAGAAVKRNTSVVNIELN-QAGCLTTLSNGERIQSRYVIGADGSRS  165 (487)
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeeEEEECCCcEEEeCEEEECCCCCH
Confidence            4455666777889999999999999887 555544444677899999999998764

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.09  E-value=1.9e-09  Score=103.89  Aligned_cols=55  Identities=20%  Similarity=0.189  Sum_probs=44.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~  286 (342)
                      ..+...|.+.+++.|++|++++.++++..++++++.++..    ++.  .+.|+.||+|+|
T Consensus       143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  203 (588)
T PRK08958        143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATG  203 (588)
T ss_pred             HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence            4678889888888899999999999998753678888764    343  578999999876

>TIGR00275 flavoprotein, HI0933 family

Probab=99.09  E-value=9.2e-10  Score=101.43  Aligned_cols=55  Identities=16%  Similarity=0.176  Sum_probs=46.0

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~  287 (342)
                      ...+.+.|.+.+++.|++++++++|++|..+ ++ .+.++++++++.||.||+|+|.
T Consensus       104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~-~~-~~~v~~~~~~i~ad~VIlAtG~  158 (400)
T TIGR00275       104 AADVLDALLNELKELGVEILTNSKVKSIKKD-DN-GFGVETSGGEYEADKVILATGG  158 (400)
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCCEEEEEEec-CC-eEEEEECCcEEEcCEEEECCCC
Confidence            4578888999999999999999999999765 44 4566667778999999999875

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK12839 hypothetical protein; Provisional

Probab=99.09  E-value=5.5e-09  Score=100.31  Aligned_cols=42  Identities=29%  Similarity=0.491  Sum_probs=39.7

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .++||+|||+|.+|++||+.|+++|.+|+|+||++.+||.+.
T Consensus         7 ~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~   48 (572)
T PRK12839          7 HTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA   48 (572)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence            469999999999999999999999999999999999999875

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=99.09  E-value=1.5e-09  Score=104.12  Aligned_cols=43  Identities=33%  Similarity=0.525  Sum_probs=39.5

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      +.++||+|||+|.+|++||+.|+++|.+|+|||+.+..||.+.
T Consensus         4 d~~~DvvIiG~G~aGl~aA~~~a~~G~~v~liEk~~~~gG~~~   46 (557)
T PRK12844          4 DETYDVVVVGSGGGGMCAALAAADSGLEPLIVEKQDKVGGSTA   46 (557)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceec
Confidence            3479999999999999999999999999999999998898753

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=99.08  E-value=3e-09  Score=102.51  Aligned_cols=56  Identities=20%  Similarity=0.190  Sum_probs=45.4

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCc--EEEc-CEEEECCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKC-KKVVCDPSYL  288 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~--~~~a-~~vI~~~~~~  288 (342)
                      ..++..|.+.++++|++|+++++|+++..+ ++++++|..  +++  ++.| +.||+|+|-.
T Consensus       221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~-~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~  281 (578)
T PRK12843        221 NALIGRLLYSLRARGVRILTQTDVESLETD-HGRVIGATVVQGGVRRRIRARGGVVLATGGF  281 (578)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEee-CCEEEEEEEecCCeEEEEEccceEEECCCCc
Confidence            468889999999999999999999999876 788888766  333  4776 6799888644

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=99.08  E-value=9.9e-10  Score=101.75  Aligned_cols=55  Identities=11%  Similarity=0.003  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      .+.+.|.+.+++.|++++.+++|++++.+ ++.+. |++ +|.+++||.||.|.|.++
T Consensus       113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~g~~~~a~~vVgAdG~~S  168 (405)
T PRK05714        113 VVQDALLERLHDSDIGLLANARLEQMRRS-GDDWL-LTLADGRQLRAPLVVAADGANS  168 (405)
T ss_pred             HHHHHHHHHHhcCCCEEEcCCEEEEEEEc-CCeEE-EEECCCCEEEeCEEEEecCCCc
Confidence            56667777777789999999999999876 45444 444 677899999999999875

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=99.07  E-value=2.9e-09  Score=103.13  Aligned_cols=55  Identities=16%  Similarity=0.283  Sum_probs=44.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~  286 (342)
                      ..+...|.+.+++.|++|+.++.++++..++++++.+|..    +|.  .+.|+.||+|+|
T Consensus       166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  226 (617)
T PTZ00139        166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATG  226 (617)
T ss_pred             HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence            4688899998989999999999999988733678888764    343  578999998875

>PRK06185 hypothetical protein; Provisional

Probab=99.07  E-value=3.1e-09  Score=98.56  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=34.2

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ..++||+|||||++|+++|+.|+++|++|+|+|+++.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~~G~~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLARAGVDVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHhCCCcEEEEecCCc
Confidence            3569999999999999999999999999999999854

>PRK07804 L-aspartate oxidase; Provisional

Probab=99.07  E-value=2.8e-09  Score=101.96  Aligned_cols=41  Identities=22%  Similarity=0.347  Sum_probs=37.5

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      .++||+|||+|++||+||..++++|.+|+|+||....||.+
T Consensus        15 ~~~DVlVIG~G~AGl~AAi~aae~G~~VilleK~~~~~g~s   55 (541)
T PRK07804         15 DAADVVVVGSGVAGLTAALAARRAGRRVLVVTKAALDDGST   55 (541)
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCeEEEEEccCCCCCch
Confidence            36899999999999999999999999999999999877743

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=99.05  E-value=4.3e-09  Score=96.77  Aligned_cols=57  Identities=21%  Similarity=0.121  Sum_probs=46.5

Q ss_pred             ChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+.+.|.+.+.+.+ ++++.+++|+.++.+ ++.+..... +|.+++||.||.|-|.++
T Consensus       104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~-~~~v~v~l~~dG~~~~a~llVgADG~~S  162 (387)
T COG0654         104 SDLLNALLEAARALPNVTLRFGAEVEAVEQD-GDGVTVTLSFDGETLDADLLVGADGANS  162 (387)
T ss_pred             HHHHHHHHHHHhhCCCcEEEcCceEEEEEEc-CCceEEEEcCCCcEEecCEEEECCCCch
Confidence            567778888887776 899999999999987 566664444 788999999999999774

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=99.05  E-value=1.6e-10  Score=93.32  Aligned_cols=41  Identities=34%  Similarity=0.460  Sum_probs=39.0

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      +.||+|||||.+||+|||+|+++|.+|+|+|++..+||-++
T Consensus        30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w   70 (262)
T COG1635          30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW   70 (262)
T ss_pred             hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence            47999999999999999999999999999999999999876

>PRK06184 hypothetical protein; Provisional

Probab=99.05  E-value=1.9e-09  Score=102.54  Aligned_cols=55  Identities=15%  Similarity=0.045  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE---eCCcEEEcCEEEECCCCCC
Q 019351          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT---SEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~---~~g~~~~a~~vI~~~~~~~  289 (342)
                      +-..|.+.+++.|++|+++++|++++.+ ++.+....   .++.+++||.||.|.|..+
T Consensus       111 le~~L~~~l~~~gv~i~~~~~v~~i~~~-~~~v~v~~~~~~~~~~i~a~~vVgADG~~S  168 (502)
T PRK06184        111 TERILRERLAELGHRVEFGCELVGFEQD-ADGVTARVAGPAGEETVRARYLVGADGGRS  168 (502)
T ss_pred             HHHHHHHHHHHCCCEEEeCcEEEEEEEc-CCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence            4456677777789999999999999887 55554333   2456899999999998764

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=99.04  E-value=1.4e-09  Score=100.05  Aligned_cols=56  Identities=16%  Similarity=0.102  Sum_probs=44.9

Q ss_pred             ChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+.+.|.+.+.+.| ++|+.+++|+++..+ ++++. +++ +|.++.||.||.|.|..+
T Consensus       106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~-~~~~~-v~~~~g~~~~~~~vi~adG~~S  163 (385)
T TIGR01988       106 RVLQQALWERLQEYPNVTLLCPARVVELPRH-SDHVE-LTLDDGQQLRARLLVGADGANS  163 (385)
T ss_pred             HHHHHHHHHHHHhCCCcEEecCCeEEEEEec-CCeeE-EEECCCCEEEeeEEEEeCCCCC
Confidence            457777888888887 999999999999876 55544 544 777899999999988764

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.04  E-value=4e-09  Score=101.98  Aligned_cols=55  Identities=15%  Similarity=0.231  Sum_probs=44.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~  286 (342)
                      ..+...|.+.+++.|++|++++.|++|..++++++.+|..    +|.  .+.|+.||+|+|
T Consensus       149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  209 (598)
T PRK09078        149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATG  209 (598)
T ss_pred             HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence            3588889998888999999999999998763477888764    343  688999999886

>PRK08013 oxidoreductase; Provisional

Probab=99.04  E-value=2.4e-09  Score=99.02  Aligned_cols=56  Identities=13%  Similarity=0.033  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      .+-..|.+.+... |++++.+++|++++.+ ++.+.....+|.+++||.||.|.|..+
T Consensus       112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~-~~~v~v~~~~g~~i~a~lvVgADG~~S  168 (400)
T PRK08013        112 VIHYALWQKAQQSSDITLLAPAELQQVAWG-ENEAFLTLKDGSMLTARLVVGADGANS  168 (400)
T ss_pred             HHHHHHHHHHhcCCCcEEEcCCeeEEEEec-CCeEEEEEcCCCEEEeeEEEEeCCCCc
Confidence            4566677777665 7999999999999876 444433334788999999999998764

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=99.03  E-value=1.4e-08  Score=96.74  Aligned_cols=41  Identities=32%  Similarity=0.503  Sum_probs=38.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .++||+|||+| +||+||++++++|.+|+||||.+.+||.+.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t~   46 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAREGLSVALVEATDKFGGTTA   46 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHHCCCcEEEEecCCCCCccee
Confidence            46899999999 999999999999999999999999898664

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.03  E-value=2.5e-09  Score=98.97  Aligned_cols=57  Identities=14%  Similarity=0.092  Sum_probs=46.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+.+.|++++.+++|++++.+ ++.+.....+|.++.||.||.|.|.++
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~g~~~~ad~vI~AdG~~S  167 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETR-DEGVTVTLSDGSVLEARLLVAADGARS  167 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCEEEEEECCCCEEEeCEEEEcCCCCh
Confidence            467888888888889999999999999876 555443334777899999999999875

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=99.03  E-value=2.4e-09  Score=97.09  Aligned_cols=56  Identities=23%  Similarity=0.222  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CC--cEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EG--ETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~---~g--~~~~a~~vI~~~~~~~  289 (342)
                      .+-+.|.+.+++.|++|+.+++|+++..+ .+++..+..   +|  .+++||.||.|.|..+
T Consensus       112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d-~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S  172 (356)
T PF01494_consen  112 ELDRALREEAEERGVDIRFGTRVVSIEQD-DDGVTVVVRDGEDGEEETIEADLVVGADGAHS  172 (356)
T ss_dssp             HHHHHHHHHHHHHTEEEEESEEEEEEEEE-TTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred             HHHHhhhhhhhhhhhhheeeeeccccccc-ccccccccccccCCceeEEEEeeeecccCccc
Confidence            56677888888889999999999999887 555544433   23  2689999999999875

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PLN02661 Putative thiazole synthesis

Probab=99.02  E-value=6.5e-09  Score=92.01  Aligned_cols=40  Identities=25%  Similarity=0.353  Sum_probs=36.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhC-CCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~~~~~GG~~   43 (342)
                      ++||+|||||++|++||+.|+++ |++|+|+|++..+||..
T Consensus        92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~  132 (357)
T PLN02661         92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA  132 (357)
T ss_pred             cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence            58999999999999999999986 89999999999888744

>PRK09126 hypothetical protein; Provisional

Probab=99.02  E-value=2.3e-09  Score=98.83  Aligned_cols=38  Identities=29%  Similarity=0.413  Sum_probs=35.2

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      |+ ++||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus         1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~   38 (392)
T PRK09126          1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA   38 (392)
T ss_pred             CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence            55 489999999999999999999999999999998764

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=99.02  E-value=2e-10  Score=93.35  Aligned_cols=41  Identities=34%  Similarity=0.442  Sum_probs=35.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||||++||+||++|+++|++|+|+|++..+||..+
T Consensus        17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~   57 (230)
T PF01946_consen   17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW   57 (230)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred             cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence            58999999999999999999999999999999999998876

>TIGR00551 nadB L-aspartate oxidase

Probab=99.02  E-value=5e-09  Score=99.17  Aligned_cols=56  Identities=18%  Similarity=0.129  Sum_probs=44.9

Q ss_pred             ChHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEeC--C--cEEEcCEEEECCCCC
Q 019351          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTSE--G--ETAKCKKVVCDPSYL  288 (342)
Q Consensus       232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~~--g--~~~~a~~vI~~~~~~  288 (342)
                      ..+...|.+.+++ .|++|++++.|++|..+ ++++.++...  +  ..+.|+.||+|+|-+
T Consensus       128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~  188 (488)
T TIGR00551       128 REVITTLVKKALNHPNIRIIEGENALDLLIE-TGRVVGVWVWNRETVETCHADAVVLATGGA  188 (488)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECeEeeeeecc-CCEEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence            4678888888887 69999999999999876 6777776652  2  368999999998754

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.02  E-value=8e-09  Score=99.72  Aligned_cols=55  Identities=16%  Similarity=0.267  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~  286 (342)
                      ..+...|.+.+.+.|++++.++.++++..++++++.+|..    ++.  .+.|+.||+|+|
T Consensus       148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  208 (591)
T PRK07057        148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATG  208 (591)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCC
Confidence            4688889888888999999999999988753577887764    233  578999999876

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=99.01  E-value=1.9e-09  Score=99.15  Aligned_cols=57  Identities=12%  Similarity=0.036  Sum_probs=44.7

Q ss_pred             ChHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+.+.|.+.+.. .|++++++++|++|..+ ++.+.....+|.++.||.||.|.|.+.
T Consensus       105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~v~~~~g~~~~ad~vV~AdG~~S  162 (382)
T TIGR01984       105 ADLGQALLSRLALLTNIQLYCPARYKEIIRN-QDYVRVTLDNGQQLRAKLLIAADGANS  162 (382)
T ss_pred             HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEc-CCeEEEEECCCCEEEeeEEEEecCCCh
Confidence            4677788888877 49999999999999876 455443333677899999999999764

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=99.01  E-value=1e-08  Score=95.76  Aligned_cols=62  Identities=11%  Similarity=0.042  Sum_probs=49.4

Q ss_pred             EeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcC-CCcEEEEEe--CCcEEEcCEEEECCCC
Q 019351          226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS--EGETAKCKKVVCDPSY  287 (342)
Q Consensus       226 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~~v~~--~g~~~~a~~vI~~~~~  287 (342)
                      ++.++...+++.|.+.++++|++|+++++|++|..++ ++++++|..  ++.+++|+.||+|+|-
T Consensus       117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG  181 (432)
T TIGR02485       117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGG  181 (432)
T ss_pred             eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCC
Confidence            4445566799999999999999999999999998752 466776665  3358999999998873

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=99.01  E-value=9e-09  Score=99.32  Aligned_cols=54  Identities=22%  Similarity=0.268  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~  287 (342)
                      .+...|.+.+++.|++|++++.|++|..+ ++++.+|..    ++.  .+.|+.||+|+|-
T Consensus       130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG  189 (566)
T TIGR01812       130 ALLHTLYEQCLKLGVSFFNEYFALDLIHD-DGRVRGVVAYDLKTGEIVFFRAKAVVLATGG  189 (566)
T ss_pred             HHHHHHHHHHHHcCCEEEeccEEEEEEEe-CCEEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence            57788888888889999999999999877 788877653    343  5899999998873

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=99.01  E-value=3.4e-09  Score=98.20  Aligned_cols=36  Identities=22%  Similarity=0.409  Sum_probs=33.8

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      |+..+||+|||||++||++|..|+++|++|+|+|++
T Consensus         1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~   36 (405)
T PRK08850          1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ   36 (405)
T ss_pred             CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence            555789999999999999999999999999999996

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.01  E-value=1.1e-08  Score=98.65  Aligned_cols=43  Identities=23%  Similarity=0.355  Sum_probs=38.1

Q ss_pred             CC-CcccEEEECCCchHHHHHHhhhhCC---CeEEEEcCCCCCCCcC
Q 019351            1 MD-EEYDVIVLGTGLKECILSGLLSVDG---LKVLHMDRNDYYGGES   43 (342)
Q Consensus         1 m~-~~~DViIiG~GiaGl~aA~~L~~~G---~~V~vlE~~~~~GG~~   43 (342)
                      |+ .++||+|||+|++||+||..++++|   .+|+|+||....||.+
T Consensus         1 ~~~~~~DVlVVG~G~AGl~AA~~Aa~~G~~~~~V~lleK~~~~~~~s   47 (577)
T PRK06069          1 MEVLKYDVVIVGSGLAGLRAAVAAAERSGGKLSVAVVSKTQPMRSHS   47 (577)
T ss_pred             CCceecCEEEECccHHHHHHHHHHHHhCCCCCcEEEEEcccCCCCCc
Confidence            44 3689999999999999999999998   8999999998877754

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=99.01  E-value=4.8e-09  Score=96.61  Aligned_cols=55  Identities=15%  Similarity=0.094  Sum_probs=42.9

Q ss_pred             ChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+.+.|.+.+++.| ++++ ++.|+++..+ ++.+ .|++ +|.++.||.||.|.|.++
T Consensus       111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~-~~~~-~v~~~~g~~~~a~~vI~adG~~S  167 (388)
T PRK07608        111 SLIERALWAALRFQPNLTWF-PARAQGLEVD-PDAA-TLTLADGQVLRADLVVGADGAHS  167 (388)
T ss_pred             HHHHHHHHHHHHhCCCcEEE-cceeEEEEec-CCeE-EEEECCCCEEEeeEEEEeCCCCc
Confidence            356777888888887 8888 9999999866 4544 4555 666899999999999875

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.01  E-value=3.8e-09  Score=102.67  Aligned_cols=39  Identities=31%  Similarity=0.344  Sum_probs=35.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      ++||+|||+|.+||+||..++++|.+|+|+||...+|+.
T Consensus        35 ~~DVlVVG~G~AGl~AAi~Aae~G~~VilieK~~~~~~g   73 (640)
T PRK07573         35 KFDVIVVGTGLAGASAAATLGELGYNVKVFCYQDSPRRA   73 (640)
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCcEEEEecCCCCCcc
Confidence            589999999999999999999999999999998877643

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.01  E-value=4.2e-09  Score=101.24  Aligned_cols=54  Identities=19%  Similarity=0.065  Sum_probs=44.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CC--cEEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g--~~~~a~~vI~~~~  286 (342)
                      ..++..|.+.+...|+++++++.++++..+ ++++++|..    ++  ..+.|+.||+|+|
T Consensus       136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  195 (566)
T PRK06452        136 MALLHTLFERTSGLNVDFYNEWFSLDLVTD-NKKVVGIVAMQMKTLTPFFFKTKAVVLATG  195 (566)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEEE-CCEEEEEEEEECCCCeEEEEEeCeEEECCC
Confidence            357788888888889999999999999887 788988865    22  2578999999886

>PRK07045 putative monooxygenase; Reviewed

Probab=99.01  E-value=6e-09  Score=95.97  Aligned_cols=57  Identities=18%  Similarity=0.158  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHH-HcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSA-VYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      .+.+.|.+.+. ..|++++++++|+.|+.++++.++.|+. +|+++.||.||.|.|..+
T Consensus       107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~g~~~~~~~vIgADG~~S  165 (388)
T PRK07045        107 QLRRLLLAKLDGLPNVRLRFETSIERIERDADGTVTSVTLSDGERVAPTVLVGADGARS  165 (388)
T ss_pred             HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCCCcEEEEEeCCCCEEECCEEEECCCCCh
Confidence            34455555554 3589999999999998763444455665 677899999999998764

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=99.01  E-value=3.9e-09  Score=101.71  Aligned_cols=55  Identities=15%  Similarity=0.181  Sum_probs=44.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~  287 (342)
                      ..+...|.+.+++.|++|++++.|++|..+ ++++.++..    ++.  .+.|+.||+|+|-
T Consensus       135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~-~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG  195 (575)
T PRK05945        135 HAILHELVNNLRRYGVTIYDEWYVMRLILE-DNQAKGVVMYHIADGRLEVVRAKAVMFATGG  195 (575)
T ss_pred             HHHHHHHHHHHhhCCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence            468888999888899999999999999876 677776653    343  5899999998864

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=99.00  E-value=6.4e-09  Score=100.80  Aligned_cols=55  Identities=9%  Similarity=0.198  Sum_probs=44.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~  286 (342)
                      ..+...|.+.+++.|++|+.++.++++..++++++.++..    +|.  .+.|+.||+|+|
T Consensus       187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  247 (635)
T PLN00128        187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATG  247 (635)
T ss_pred             HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCC
Confidence            4678889998888899999999999987653577887764    343  578999999876

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=99.00  E-value=7.6e-09  Score=96.18  Aligned_cols=38  Identities=24%  Similarity=0.413  Sum_probs=35.0

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      +..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   53 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE   53 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence            34689999999999999999999999999999998754

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=99.00  E-value=6e-09  Score=95.98  Aligned_cols=56  Identities=21%  Similarity=0.099  Sum_probs=42.0

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+.+.|.+.+++.+...+++++|++++.+ ++.+. +++ ++.++.||.||.|.|.++
T Consensus       111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~-~~~~~-v~~~~g~~~~a~~vI~AdG~~S  167 (388)
T PRK07494        111 WLLNRALEARVAELPNITRFGDEAESVRPR-EDEVT-VTLADGTTLSARLVVGADGRNS  167 (388)
T ss_pred             HHHHHHHHHHHhcCCCcEEECCeeEEEEEc-CCeEE-EEECCCCEEEEeEEEEecCCCc
Confidence            356667777777765445889999999876 55544 444 677899999999998764

>PRK02106 choline dehydrogenase; Validated

Probab=98.99  E-value=1.4e-08  Score=97.86  Aligned_cols=38  Identities=32%  Similarity=0.563  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhh-CCCeEEEEcCCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDY   38 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~-~G~~V~vlE~~~~   38 (342)
                      |..+||+||||||.+|+++|.+|++ +|++|+|||+++.
T Consensus         2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~   40 (560)
T PRK02106          2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP   40 (560)
T ss_pred             CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence            4567999999999999999999999 8999999999854

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=98.99  E-value=1.4e-08  Score=93.57  Aligned_cols=35  Identities=23%  Similarity=0.478  Sum_probs=33.0

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ++||+|||||++||++|+.|+++|++|+|+|+++.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence            47999999999999999999999999999999874

>PRK06834 hypothetical protein; Provisional

Probab=98.99  E-value=6.4e-09  Score=98.20  Aligned_cols=55  Identities=15%  Similarity=0.102  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      .+-..|.+.+++.|++|+.+++|++++.+ ++.+. ++. ++.+++||.||.|.|.++
T Consensus       101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~-~~~v~-v~~~~g~~i~a~~vVgADG~~S  156 (488)
T PRK06834        101 HIERILAEWVGELGVPIYRGREVTGFAQD-DTGVD-VELSDGRTLRAQYLVGCDGGRS  156 (488)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEc-CCeEE-EEECCCCEEEeCEEEEecCCCC
Confidence            45566777778889999999999999887 55544 444 667899999999998765

>PRK07395 L-aspartate oxidase; Provisional

Probab=98.98  E-value=5.7e-09  Score=99.81  Aligned_cols=55  Identities=7%  Similarity=0.119  Sum_probs=42.8

Q ss_pred             ChHHHHHHHHHHHc-CcEEEcCCccceEEEcC-CCcEEEEEe--CCc--EEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDE-EGKVVGVTS--EGE--TAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~-~~~~~~v~~--~g~--~~~a~~vI~~~~  286 (342)
                      ..++..|.+.+++. |++|++++.|+++..++ ++++.+|..  ++.  .+.|+.||+|+|
T Consensus       134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATG  194 (553)
T PRK07395        134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATG  194 (553)
T ss_pred             HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCC
Confidence            46788888887654 99999999999998752 367887765  443  378999999876

>PRK08401 L-aspartate oxidase; Provisional

Probab=98.98  E-value=3e-08  Score=93.30  Aligned_cols=56  Identities=16%  Similarity=0.216  Sum_probs=46.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+.+.|.+.+++.|++++.+ .++.+..+ +++++++.+++..+.|+.||+|+|-+.
T Consensus       120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~-~g~v~Gv~~~g~~i~a~~VVLATGG~~  175 (466)
T PRK08401        120 KHIIKILYKHARELGVNFIRG-FAEELAIK-NGKAYGVFLDGELLKFDATVIATGGFS  175 (466)
T ss_pred             HHHHHHHHHHHHhcCCEEEEe-EeEEEEee-CCEEEEEEECCEEEEeCeEEECCCcCc
Confidence            468889999999999999876 78888766 678888888888899999999987543

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=98.96  E-value=3.2e-09  Score=88.61  Aligned_cols=37  Identities=27%  Similarity=0.450  Sum_probs=31.6

Q ss_pred             EEECCCchHHHHHHhhhhCCCe-EEEEcCCCCCCCcCc
Q 019351            8 IVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESS   44 (342)
Q Consensus         8 iIiG~GiaGl~aA~~L~~~G~~-V~vlE~~~~~GG~~~   44 (342)
                      +|||||++||++|+.|.++|.+ |+|||+++.+||.+.
T Consensus         1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~   38 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWR   38 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHH
T ss_pred             CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeE
Confidence            7999999999999999999998 999999999999876

...

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=98.95  E-value=9.4e-09  Score=97.40  Aligned_cols=42  Identities=38%  Similarity=0.460  Sum_probs=37.2

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC-CCCCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND-YYGGE   42 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~-~~GG~   42 (342)
                      |..+|||+|||||+||+.||+.+++.|.+|+++|++. .+|+.
T Consensus         1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m   43 (618)
T PRK05192          1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM   43 (618)
T ss_pred             CCccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence            5567999999999999999999999999999999973 56653

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.95  E-value=1.1e-08  Score=98.65  Aligned_cols=56  Identities=18%  Similarity=0.121  Sum_probs=44.4

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCC---CcEEEEEe----CCc--EEEcCEEEECCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE---GKVVGVTS----EGE--TAKCKKVVCDPSY  287 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~---~~~~~v~~----~g~--~~~a~~vI~~~~~  287 (342)
                      ..+...|.+.+++.|++|++++.|++|..+++   +++.++..    +++  .+.|+.||+|+|-
T Consensus       140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG  204 (583)
T PRK08205        140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGG  204 (583)
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCC
Confidence            46788899989889999999999999987622   67877754    343  5789999998863

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=98.94  E-value=6.6e-08  Score=87.98  Aligned_cols=58  Identities=16%  Similarity=0.238  Sum_probs=49.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--cEEEcCEEEECCCCC-Cc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYL-PN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g--~~~~a~~vI~~~~~~-~~  290 (342)
                      .++.++|.++++++|++++.+++|+++..+ +++++.|.+ ++  .++.||+||+|+|.| +.
T Consensus       263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~-~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~  324 (419)
T TIGR03378       263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFE-GNRVTRIHTRNHRDIPLRADHFVLASGSFFSN  324 (419)
T ss_pred             HHHHHHHHHHHHHCCCEEEECcEEEEEEee-CCeEEEEEecCCccceEECCEEEEccCCCcCH
Confidence            477888999999999999999999999887 777888876 43  489999999999988 53

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>PLN02697 lycopene epsilon cyclase

Probab=98.94  E-value=1.1e-08  Score=96.57  Aligned_cols=55  Identities=15%  Similarity=0.194  Sum_probs=42.4

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE-eCCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~-~~g~~~~a~~vI~~~~~~~  289 (342)
                      .+.+.|.+.+.+.|+++ .++.|++|..+ ++.+..++ .+|.++.|+.||.|.|.++
T Consensus       193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~-~~~~~vv~~~dG~~i~A~lVI~AdG~~S  248 (529)
T PLN02697        193 LLHEELLRRCVESGVSY-LSSKVDRITEA-SDGLRLVACEDGRVIPCRLATVASGAAS  248 (529)
T ss_pred             HHHHHHHHHHHhcCCEE-EeeEEEEEEEc-CCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence            45567777777789998 67899999876 45444444 4778899999999999876

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.94  E-value=1.7e-08  Score=98.04  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=35.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      ++||+|||+|++||+||..++++|.+|+|+||.+..||.
T Consensus         8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~   46 (626)
T PRK07803          8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH   46 (626)
T ss_pred             eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence            589999999999999999999999999999999876653

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=98.94  E-value=6.6e-08  Score=92.88  Aligned_cols=42  Identities=29%  Similarity=0.587  Sum_probs=39.1

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      +++||+|||+|.+|++||..++++|.+|+||||.+.+||.+.
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~~   47 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGSTA   47 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCcccc
Confidence            469999999999999999999999999999999999988654

>PRK07236 hypothetical protein; Provisional

Probab=98.94  E-value=2e-08  Score=92.38  Aligned_cols=35  Identities=23%  Similarity=0.238  Sum_probs=32.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ..||+|||||++||++|..|+++|.+|+|+|+++.
T Consensus         6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236          6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            37999999999999999999999999999999864

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=98.92  E-value=3.2e-08  Score=91.22  Aligned_cols=55  Identities=16%  Similarity=0.044  Sum_probs=42.2

Q ss_pred             hHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      .+.+.|.+.++.. |++++.+++|+++..+ ++. +.|++ ++.+++||.||.|.|.++
T Consensus       113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~~~a~~vI~AdG~~S  169 (391)
T PRK08020        113 VLQLALWQALEAHPNVTLRCPASLQALQRD-DDG-WELTLADGEEIQAKLVIGADGANS  169 (391)
T ss_pred             HHHHHHHHHHHcCCCcEEEcCCeeEEEEEc-CCe-EEEEECCCCEEEeCEEEEeCCCCc
Confidence            4556666666666 9999999999999876 444 34544 677899999999999875

>PLN02463 lycopene beta cyclase

Probab=98.92  E-value=1.4e-08  Score=94.41  Aligned_cols=54  Identities=17%  Similarity=0.167  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      .+.+.|.+.+.+.|++++ .++|++|+.+ +++ ..|++ +|.+++||.||.|.|..+
T Consensus       115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~-~~~-~~V~~~dG~~i~A~lVI~AdG~~s  169 (447)
T PLN02463        115 KLKSKMLERCIANGVQFH-QAKVKKVVHE-ESK-SLVVCDDGVKIQASLVLDATGFSR  169 (447)
T ss_pred             HHHHHHHHHHhhcCCEEE-eeEEEEEEEc-CCe-EEEEECCCCEEEcCEEEECcCCCc
Confidence            445566677777799986 5789999876 554 44555 677999999999998764

>PRK07588 hypothetical protein; Provisional

Probab=98.92  E-value=1.2e-08  Score=94.00  Aligned_cols=55  Identities=9%  Similarity=0.013  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      .|...|.+.+ ..|++|+++++|++|+.+ ++.+.....+|++++||.||.|.|..+
T Consensus       104 ~l~~~L~~~~-~~~v~i~~~~~v~~i~~~-~~~v~v~~~~g~~~~~d~vIgADG~~S  158 (391)
T PRK07588        104 DLAAAIYTAI-DGQVETIFDDSIATIDEH-RDGVRVTFERGTPRDFDLVIGADGLHS  158 (391)
T ss_pred             HHHHHHHHhh-hcCeEEEeCCEEeEEEEC-CCeEEEEECCCCEEEeCEEEECCCCCc
Confidence            3444555543 347999999999999876 555543334788899999999999764

>PRK08071 L-aspartate oxidase; Provisional

Probab=98.91  E-value=2e-08  Score=95.46  Aligned_cols=54  Identities=17%  Similarity=0.145  Sum_probs=42.4

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CCc--EEEcCEEEECCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSY  287 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~---~g~--~~~a~~vI~~~~~  287 (342)
                      ..+...|.+.++ .|++|++++.|++|..+ ++++.++..   +++  .+.|+.||+|+|-
T Consensus       130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG  188 (510)
T PRK08071        130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIE-NGRCIGVLTKDSEGKLKRYYADYVVLASGG  188 (510)
T ss_pred             HHHHHHHHHHHh-cCCEEEECeEhhheeec-CCEEEEEEEEECCCcEEEEEcCeEEEecCC
Confidence            357788888775 69999999999999876 677877765   232  6889999998864

>PLN02985 squalene monooxygenase

Probab=98.91  E-value=3e-08  Score=94.02  Aligned_cols=36  Identities=31%  Similarity=0.447  Sum_probs=33.2

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ..+||+|||||++|+++|+.|+++|++|+|+|+...
T Consensus        42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~   77 (514)
T PLN02985         42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR   77 (514)
T ss_pred             CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence            358999999999999999999999999999999753

>PRK08244 hypothetical protein; Provisional

Probab=98.90  E-value=2.6e-08  Score=94.69  Aligned_cols=56  Identities=18%  Similarity=0.086  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEE-EEe-CC-cEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVG-VTS-EG-ETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~-v~~-~g-~~~~a~~vI~~~~~~~  289 (342)
                      .+-+.|.+.+++.|++++.+++|++++.+ ++++.. +.. +| .+++||.||.|.|..+
T Consensus       101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~~~g~~~i~a~~vVgADG~~S  159 (493)
T PRK08244        101 ETEKVLEEHARSLGVEIFRGAEVLAVRQD-GDGVEVVVRGPDGLRTLTSSYVVGADGAGS  159 (493)
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEEc-CCeEEEEEEeCCccEEEEeCEEEECCCCCh
Confidence            45556677777789999999999999876 555432 222 34 4799999999998764

>PRK08275 putative oxidoreductase; Provisional

Probab=98.89  E-value=3.8e-08  Score=94.58  Aligned_cols=56  Identities=16%  Similarity=0.147  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~  287 (342)
                      ..+...|.+.+++.|++|++++.|++|..++++++.++..    ++.  .+.|+.||+|+|-
T Consensus       137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG  198 (554)
T PRK08275        137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGA  198 (554)
T ss_pred             HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCC
Confidence            3678889898888999999999999998753566777653    343  4889999998764

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=98.89  E-value=3.1e-08  Score=95.05  Aligned_cols=38  Identities=29%  Similarity=0.440  Sum_probs=35.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      .+||+|||||++||++|..|+++|.+|+|+|+++.++.
T Consensus        10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~~   47 (538)
T PRK06183         10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLYD   47 (538)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            58999999999999999999999999999999976543

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.89  E-value=6.2e-08  Score=92.96  Aligned_cols=56  Identities=16%  Similarity=0.104  Sum_probs=43.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~  287 (342)
                      ..+...|.+.+++.|++|++++.|+++..+++++++++..    ++.  .+.|+.||+|+|-
T Consensus       134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG  195 (543)
T PRK06263        134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGG  195 (543)
T ss_pred             HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence            4677888888888899999999999998762334777653    343  5899999998863

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=98.89  E-value=3.1e-08  Score=95.31  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=34.4

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      .++||+|||||++||++|+.|+++|.+|+|+|+++.+
T Consensus        22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~   58 (547)
T PRK08132         22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL   58 (547)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            4589999999999999999999999999999998754

>PRK07512 L-aspartate oxidase; Provisional

Probab=98.88  E-value=2.9e-08  Score=94.37  Aligned_cols=54  Identities=19%  Similarity=0.226  Sum_probs=43.8

Q ss_pred             ChHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe--CCc--EEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~--~~~a~~vI~~~~  286 (342)
                      ..+...|.+.+++. |++|+.++.|++|..+ +++++++..  +++  .+.|+.||+|+|
T Consensus       136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~~~~i~Ak~VVLATG  194 (513)
T PRK07512        136 AAIMRALIAAVRATPSITVLEGAEARRLLVD-DGAVAGVLAATAGGPVVLPARAVVLATG  194 (513)
T ss_pred             HHHHHHHHHHHHhCCCCEEEECcChhheeec-CCEEEEEEEEeCCeEEEEECCEEEEcCC
Confidence            46888898888775 8999999999999876 678887765  333  589999998875

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=98.88  E-value=2.2e-08  Score=92.26  Aligned_cols=37  Identities=24%  Similarity=0.338  Sum_probs=34.3

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      ||+|||||++|+++|+.|+++|++|+|+|+++..|+.
T Consensus         1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            8999999999999999999999999999998776653

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=98.88  E-value=7.3e-08  Score=93.37  Aligned_cols=55  Identities=13%  Similarity=0.095  Sum_probs=42.5

Q ss_pred             ChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCC
Q 019351          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~  287 (342)
                      ..+...|.+.+++.| ++|+.++.|++|..+ ++++++|..    ++.  .+.|+.||+|+|-
T Consensus       132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG  193 (608)
T PRK06854        132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVD-DNRIAGAVGFSVRENKFYVFKAKAVIVATGG  193 (608)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEe-CCEEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence            356777878887775 999999999999876 677777642    343  6899999998873

>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=98.88  E-value=6.2e-10  Score=100.89  Aligned_cols=71  Identities=21%  Similarity=0.231  Sum_probs=53.8

Q ss_pred             CCceEEeCCC--CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCCCCcc
Q 019351          221 GSPYIYPLYG--LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       221 ~~~~~~~~gG--~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~~~~~  291 (342)
                      ...+.|..|-  -.++..+++=.|..+|+.+..+.+|.++..++++++.++..    .|+  .|+|+.||.|+|+..+.
T Consensus       211 ~Ga~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDs  289 (680)
T KOG0042|consen  211 KGAMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDS  289 (680)
T ss_pred             eeEEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHH
Confidence            3455666553  45667777777788999999999999998876677777654    455  47899999999988654

>PRK06753 hypothetical protein; Provisional

Probab=98.88  E-value=1.2e-08  Score=93.43  Aligned_cols=35  Identities=20%  Similarity=0.415  Sum_probs=32.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      ||+|||||++||++|..|+++|++|+|+|+++.+.
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~~   36 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESVK   36 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCccc
Confidence            79999999999999999999999999999987653

>PLN02815 L-aspartate oxidase

Probab=98.87  E-value=2.1e-08  Score=96.42  Aligned_cols=39  Identities=15%  Similarity=0.294  Sum_probs=36.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      ++||+|||+|++||+||+.+++.| +|+|+||.+..||.+
T Consensus        29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s   67 (594)
T PLN02815         29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT   67 (594)
T ss_pred             ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence            589999999999999999999999 999999999888754

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=98.87  E-value=3.1e-08  Score=96.60  Aligned_cols=54  Identities=15%  Similarity=0.090  Sum_probs=43.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~  286 (342)
                      ..+...|.+.+++.|++|+.++.|++|..+ ++++.++..    +|.  .+.|+.||+|+|
T Consensus       158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~~~G~~~~i~AkaVVLATG  217 (657)
T PRK08626        158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHD-GKRCYGAVVRCLITGELRAYVAKATLIATG  217 (657)
T ss_pred             HHHHHHHHHHHHhCCCEEEeeEEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCC
Confidence            457778888888999999999999999877 778777654    343  467999999886

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.87  E-value=1.8e-08  Score=93.09  Aligned_cols=54  Identities=26%  Similarity=0.190  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          234 LPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       234 l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      +-+.|.+.+.+ .|++++++++|+++..+ ++++. |++ ++.++.||.||.|.|.++
T Consensus       114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~-~~~~~-v~~~~g~~~~a~~vI~AdG~~S  169 (395)
T PRK05732        114 VGQRLFALLDKAPGVTLHCPARVANVERT-QGSVR-VTLDDGETLTGRLLVAADGSHS  169 (395)
T ss_pred             HHHHHHHHHhcCCCcEEEcCCEEEEEEEc-CCeEE-EEECCCCEEEeCEEEEecCCCh
Confidence            33445555544 48999999999999876 45444 555 667899999999999875

>TIGR01810 betA choline dehydrogenase

Probab=98.86  E-value=1.3e-07  Score=90.76  Aligned_cols=54  Identities=17%  Similarity=0.176  Sum_probs=39.6

Q ss_pred             hHHHHHHHHHH-HcCcEEEcCCccceEEEcCCCcEEEEEe--CCc---EEEcCEEEECCCC
Q 019351          233 ELPQAFARLSA-VYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE---TAKCKKVVCDPSY  287 (342)
Q Consensus       233 ~l~~~l~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~---~~~a~~vI~~~~~  287 (342)
                      ....++...+. ..+++|+.++.|++|..+ ++++++|+.  .++   .+.|+.||+|+|.
T Consensus       194 s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~~~~~~~~~ak~VIlaAGa  253 (532)
T TIGR01810       194 SAARAYLHPAMKRPNLEVQTRAFVTKINFE-GNRATGVEFKKGGRKEHTEANKEVILSAGA  253 (532)
T ss_pred             cHHHHHhhhhccCCCeEEEeCCEEEEEEec-CCeEEEEEEEeCCcEEEEEEeeeEEEccCC
Confidence            33444455444 457999999999999987 778888876  332   2578899998875

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=98.85  E-value=7.5e-08  Score=88.65  Aligned_cols=35  Identities=23%  Similarity=0.448  Sum_probs=32.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      .+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence            36999999999999999999999999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK06126 hypothetical protein; Provisional

Probab=98.84  E-value=2.6e-08  Score=95.88  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      .++||+|||||++||++|..|+++|++|+|+|+++.
T Consensus         6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~   41 (545)
T PRK06126          6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG   41 (545)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence            358999999999999999999999999999999763

>PRK05868 hypothetical protein; Validated

Probab=98.82  E-value=6.9e-08  Score=88.32  Aligned_cols=34  Identities=21%  Similarity=0.254  Sum_probs=32.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      ||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         3 ~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~   36 (372)
T PRK05868          3 TVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL   36 (372)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence            8999999999999999999999999999998654

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=98.82  E-value=1.2e-07  Score=98.25  Aligned_cols=41  Identities=29%  Similarity=0.471  Sum_probs=38.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||+|.+||+||..++++|.+|+|+||.+..||.+.
T Consensus       409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~  449 (1167)
T PTZ00306        409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA  449 (1167)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence            58999999999999999999999999999999999999764

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=98.81  E-value=2e-07  Score=84.27  Aligned_cols=55  Identities=18%  Similarity=0.248  Sum_probs=44.7

Q ss_pred             CChHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe------CCcEEEcCEEEECCC
Q 019351          231 LGELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS------EGETAKCKKVVCDPS  286 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~------~g~~~~a~~vI~~~~  286 (342)
                      ++.|++.|.+.+++. |++++++++|+.|++.+++. |.|++      +..+++|+.|++.+|
T Consensus       180 FG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~-W~v~~~~~~~~~~~~v~a~FVfvGAG  241 (488)
T PF06039_consen  180 FGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGR-WEVKVKDLKTGEKREVRAKFVFVGAG  241 (488)
T ss_pred             HHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCC-EEEEEEecCCCCeEEEECCEEEECCc
Confidence            789999999999888 99999999999999984554 44443      335799999988765

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=98.81  E-value=1e-07  Score=87.40  Aligned_cols=56  Identities=9%  Similarity=-0.006  Sum_probs=43.5

Q ss_pred             ChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      ..|.+.|.+.++..+ ++++.++.|+++..+ ++++ .+..++++++||.||.|.|..+
T Consensus       104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~-~~~v-~v~~~~~~~~adlvIgADG~~S  160 (374)
T PRK06617        104 SDFKKILLSKITNNPLITLIDNNQYQEVISH-NDYS-IIKFDDKQIKCNLLIICDGANS  160 (374)
T ss_pred             HHHHHHHHHHHhcCCCcEEECCCeEEEEEEc-CCeE-EEEEcCCEEeeCEEEEeCCCCc
Confidence            467777888777765 899999999999876 4544 3555555999999999998764

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=98.78  E-value=7.8e-08  Score=92.75  Aligned_cols=53  Identities=19%  Similarity=0.240  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe----CC--cEEEcCEEEECCC
Q 019351          233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPS  286 (342)
Q Consensus       233 ~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~----~g--~~~~a~~vI~~~~  286 (342)
                      .+...|.+.+.+. +++++.++.|+++..+ ++++.++..    ++  ..+.|+.||+|+|
T Consensus       134 ~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVIlATG  193 (582)
T PRK09231        134 HMLHTLFQTSLKYPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATG  193 (582)
T ss_pred             HHHHHHHHHhhcCCCcEEEeCeEEEEEEEe-CCEEEEEEEEEcCCCcEEEEECCEEEECCC
Confidence            5777777777664 8999999999999876 777776543    44  3689999999886

>TIGR02462 pyranose_ox pyranose oxidase

Probab=98.77  E-value=2.9e-07  Score=87.00  Aligned_cols=39  Identities=28%  Similarity=0.359  Sum_probs=36.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      |||+|||+|++|+++|+.|+++|++|+++|++...||..
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~   39 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK   39 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence            699999999999999999999999999999999888644

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=98.76  E-value=2.6e-07  Score=88.27  Aligned_cols=37  Identities=35%  Similarity=0.616  Sum_probs=34.0

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |..++|+||||+|.+|.++|.+|++.|++|+|||++.
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~   40 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG   40 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence            4557999999999999999999999999999999963

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=98.76  E-value=9.7e-08  Score=91.10  Aligned_cols=38  Identities=24%  Similarity=0.457  Sum_probs=34.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      .+||+|||||++|++||.+|++.|++|+|+|..  +||.+
T Consensus       211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~~--~GG~~  248 (517)
T PRK15317        211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAER--FGGQV  248 (517)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecC--CCCee
Confidence            589999999999999999999999999999763  77754

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=98.76  E-value=1.5e-07  Score=91.05  Aligned_cols=35  Identities=31%  Similarity=0.299  Sum_probs=32.4

Q ss_pred             EEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         7 ViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      |+|||+|++||+||..++++|.+|+|+||.+.+++
T Consensus         1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~   35 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR   35 (603)
T ss_pred             CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence            69999999999999999999999999999986654

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>KOG2853 consensus Possible oxidoreductase [General function prediction only]

Probab=98.74  E-value=2.4e-07  Score=79.93  Aligned_cols=42  Identities=29%  Similarity=0.427  Sum_probs=35.1

Q ss_pred             CcccEEEECCCchHHHHHHhhhhC----CCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~----G~~V~vlE~~~~~GG~~~   44 (342)
                      .+.||+|||||..|+++|+.|+++    |.+|+|+|+.+.+--.+.
T Consensus        85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqssT  130 (509)
T KOG2853|consen   85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSST  130 (509)
T ss_pred             cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccce
Confidence            358999999999999999999864    799999999886644333

>PRK06475 salicylate hydroxylase; Provisional

Probab=98.74  E-value=1.6e-07  Score=86.81  Aligned_cols=57  Identities=11%  Similarity=0.024  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe--C-CcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS--E-GETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~--~-g~~~~a~~vI~~~~~~~  289 (342)
                      ..|.+.|.+.+.. .|++++++++|+++..+ ++++.....  + ++++.||.||.|.|..+
T Consensus       107 ~~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~-~~~v~v~~~~~~~~~~~~adlvIgADG~~S  167 (400)
T PRK06475        107 ADLQSALLDACRNNPGIEIKLGAEMTSQRQT-GNSITATIIRTNSVETVSAAYLIACDGVWS  167 (400)
T ss_pred             HHHHHHHHHHHHhcCCcEEEECCEEEEEecC-CCceEEEEEeCCCCcEEecCEEEECCCccH
Confidence            3566677776655 47999999999999876 555433221  3 35799999999998764

>PRK09077 L-aspartate oxidase; Provisional

Probab=98.74  E-value=1.3e-07  Score=90.53  Aligned_cols=40  Identities=20%  Similarity=0.347  Sum_probs=36.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      .++||+|||+|++||+||+.+++. .+|+|+||....||.+
T Consensus         7 ~~~DVlVVG~G~AGl~AA~~aa~~-~~VilveK~~~~~g~t   46 (536)
T PRK09077          7 HQCDVLIIGSGAAGLSLALRLAEH-RRVAVLSKGPLSEGST   46 (536)
T ss_pred             ccCCEEEECchHHHHHHHHHHHHC-CCEEEEeccCCCCCCh
Confidence            358999999999999999999987 8999999998887754

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=98.73  E-value=8.1e-08  Score=76.49  Aligned_cols=43  Identities=19%  Similarity=0.182  Sum_probs=31.9

Q ss_pred             HcCcEEE-cCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351          244 VYGGTYM-LNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       244 ~~G~~i~-~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~  287 (342)
                      ..|++|. .+.+|+.|... +++...++.+|..+.||+||+|+|.
T Consensus       112 ~~~i~v~~~~~~V~~i~~~-~~~~~v~~~~g~~~~~d~VvLa~Gh  155 (156)
T PF13454_consen  112 PAGITVRHVRAEVVDIRRD-DDGYRVVTADGQSIRADAVVLATGH  155 (156)
T ss_pred             cCCcEEEEEeeEEEEEEEc-CCcEEEEECCCCEEEeCEEEECCCC
Confidence            3355543 56789999987 5555555568899999999999985

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=98.73  E-value=1.4e-06  Score=79.83  Aligned_cols=34  Identities=35%  Similarity=0.449  Sum_probs=32.0

Q ss_pred             cEEEECCCchHHHHHHhh--hhCCCeEEEEcCCCCC
Q 019351            6 DVIVLGTGLKECILSGLL--SVDGLKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L--~~~G~~V~vlE~~~~~   39 (342)
                      ||||||||+|||++|++|  ++.|.+|+|+|++...
T Consensus         1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence            899999999999999999  8889999999998766

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>KOG1298 consensus Squalene monooxygenase [Lipid transport and metabolism]

Probab=98.73  E-value=2.9e-07  Score=80.68  Aligned_cols=34  Identities=32%  Similarity=0.534  Sum_probs=32.2

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..+||||||||++|.+.|+.|++.|.+|+|+||.
T Consensus        44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD   77 (509)
T KOG1298|consen   44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD   77 (509)
T ss_pred             CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence            3589999999999999999999999999999994

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=98.73  E-value=3.1e-08  Score=89.06  Aligned_cols=52  Identities=21%  Similarity=0.246  Sum_probs=39.5

Q ss_pred             HHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351          234 LPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (342)
Q Consensus       234 l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~  287 (342)
                      +...+.+.++. .+++|+ ..+|++|..+ ++++.+|.+ +|..+.||.||+|+|.
T Consensus        97 y~~~~~~~l~~~~nl~i~-~~~V~~l~~e-~~~v~GV~~~~g~~~~a~~vVlaTGt  150 (392)
T PF01134_consen   97 YSRAMREKLESHPNLTII-QGEVTDLIVE-NGKVKGVVTKDGEEIEADAVVLATGT  150 (392)
T ss_dssp             HHHHHHHHHHTSTTEEEE-ES-EEEEEEC-TTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred             HHHHHHHHHhcCCCeEEE-EcccceEEec-CCeEEEEEeCCCCEEecCEEEEeccc
Confidence            34445555555 367775 6789999888 899999998 7889999999999987

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=98.73  E-value=1.7e-07  Score=90.21  Aligned_cols=54  Identities=20%  Similarity=0.178  Sum_probs=42.9

Q ss_pred             ChHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe----CC--cEEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~----~g--~~~~a~~vI~~~~  286 (342)
                      ..+...|.+.+.+. |++++.++.|+++..+ ++++.++..    +|  ..+.|+.||+|+|
T Consensus       132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~g~~~~i~AkaVILATG  192 (580)
T TIGR01176       132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVD-DGRVCGLVAIEMAEGRLVTILADAVVLATG  192 (580)
T ss_pred             HHHHHHHHHHHHhcCCCEEEeCeEEEEEEee-CCEEEEEEEEEcCCCcEEEEecCEEEEcCC
Confidence            46788888877664 8999999999999877 778887653    44  3588999999876

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=98.70  E-value=3.4e-07  Score=84.31  Aligned_cols=55  Identities=22%  Similarity=0.300  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--cEEEcCEEEECCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYL  288 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g--~~~~a~~vI~~~~~~  288 (342)
                      ++.+.|.+.+++.|++++.+++|++++.+ ++++..+.+ ++  ..+.||.||+|+|-.
T Consensus       260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~-~~~V~~v~~~~g~~~~i~AD~VVLAtGrf  317 (422)
T PRK05329        260 RLQNALRRAFERLGGRIMPGDEVLGAEFE-GGRVTAVWTRNHGDIPLRARHFVLATGSF  317 (422)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCEEEEEEeeCCceEEEECCEEEEeCCCc
Confidence            78889999999999999999999999876 566665554 44  358999999998754

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=98.69  E-value=1.4e-07  Score=88.21  Aligned_cols=56  Identities=20%  Similarity=0.280  Sum_probs=43.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~  288 (342)
                      ..+-+-|.+.|++.|++++.++ |+.+..++++.+..|++ +|++++||.||=|+|..
T Consensus       154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~~  210 (454)
T PF04820_consen  154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGRR  210 (454)
T ss_dssp             HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGGG
T ss_pred             HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCcc
Confidence            4677788899999999999885 77777765777778887 78889999999998864

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.68  E-value=3.8e-07  Score=78.12  Aligned_cols=39  Identities=28%  Similarity=0.382  Sum_probs=36.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      -|+|||+|++||+|+..+...|-.|+++|++..+||.+.
T Consensus        11 pvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi   49 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI   49 (477)
T ss_pred             cEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence            499999999999999999999988999999999999875

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=98.68  E-value=2e-08  Score=93.91  Aligned_cols=43  Identities=23%  Similarity=0.327  Sum_probs=40.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      ...+|+|||||++||+||.+|.+.|++|+|||+++.+||.+..
T Consensus         9 ~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172          9 NSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            3579999999999999999999999999999999999998753

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=98.67  E-value=1.9e-07  Score=88.97  Aligned_cols=38  Identities=26%  Similarity=0.434  Sum_probs=34.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      .+||+|||||.+|++||.+|++.|++|+|+|.  ++||.+
T Consensus       212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~  249 (515)
T TIGR03140       212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQV  249 (515)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcc
Confidence            48999999999999999999999999999975  477754

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06116 glutathione reductase; Validated

Probab=98.67  E-value=1.8e-08  Score=94.54  Aligned_cols=43  Identities=28%  Similarity=0.462  Sum_probs=39.8

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+.+|||+|||||.+|++||..|+++|++|+|+|+. .+||.|.
T Consensus         1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~   43 (450)
T PRK06116          1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV   43 (450)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence            777899999999999999999999999999999996 7899764

>PRK06996 hypothetical protein; Provisional

Probab=98.66  E-value=2.3e-07  Score=85.72  Aligned_cols=54  Identities=17%  Similarity=0.099  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC---cEEEcCEEEECCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG---ETAKCKKVVCDPSY  287 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g---~~~~a~~vI~~~~~  287 (342)
                      ..+.+.|.+.++..|++++.+++|++++.+ ++.+. ++. ++   .+++||.||.|.|-
T Consensus       115 ~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~-~~~v~-v~~~~~~g~~~i~a~lvIgADG~  172 (398)
T PRK06996        115 GSLVAALARAVRGTPVRWLTSTTAHAPAQD-ADGVT-LALGTPQGARTLRARIAVQAEGG  172 (398)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeeeeeeec-CCeEE-EEECCCCcceEEeeeEEEECCCC
Confidence            456778888888889999999999999776 44443 443 32   48999999999874

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.65  E-value=2.6e-08  Score=93.85  Aligned_cols=44  Identities=25%  Similarity=0.302  Sum_probs=41.3

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+.+|||+|||||.+|+.||.+|++.|++|+|+|+++.+||.|.
T Consensus         1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~   44 (471)
T PRK06467          1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL   44 (471)
T ss_pred             CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence            77789999999999999999999999999999999889999774

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=98.65  E-value=2.7e-08  Score=93.80  Aligned_cols=58  Identities=21%  Similarity=0.118  Sum_probs=45.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|++++++++|++++.+ ++.+.....+++++.+|.||+|+|..|+
T Consensus       216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~-~~~~~v~~~~g~~i~~D~vi~a~G~~p~  273 (461)
T PRK05249        216 DEISDALSYHLRDSGVTIRHNEEVEKVEGG-DDGVIVHLKSGKKIKADCLLYANGRTGN  273 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEECCEEEEEEEe-CCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence            356778888888899999999999999865 4443333336778999999999998764

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=98.62  E-value=2.8e-07  Score=80.46  Aligned_cols=95  Identities=13%  Similarity=0.177  Sum_probs=59.4

Q ss_pred             CCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCC-CCChHHHHHHH
Q 019351          162 LTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY-GLGELPQAFAR  240 (342)
Q Consensus       162 ~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g-G~~~l~~~l~~  240 (342)
                      +++.++.||+....+..++.-++..+.+.   ..  ..++...-..+.++.+..+..+.-+...+.++ -+..++..|..
T Consensus       161 L~~~tI~d~Fse~FF~sNFW~yW~tmFAF---ek--WhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlPli~  235 (587)
T COG4716         161 LDDLTIEDWFSEDFFKSNFWYYWQTMFAF---EK--WHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLPLIT  235 (587)
T ss_pred             cCCccHHHhhhHhhhhhhHHHHHHHHHhh---hH--HHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHHHHH
Confidence            47899999987765766665444333321   11  12233333333344443333322233334444 48899999999


Q ss_pred             HHHHcCcEEEcCCccceEEEc
Q 019351          241 LSAVYGGTYMLNKPECKVEFD  261 (342)
Q Consensus       241 ~~~~~G~~i~~~~~V~~i~~~  261 (342)
                      .++.+|+++..++.|..|+.+
T Consensus       236 yL~~H~Vdf~~~~~Vedi~v~  256 (587)
T COG4716         236 YLKSHGVDFTYDQKVEDIDVD  256 (587)
T ss_pred             HHHHcCCceEeccEEeeeeec
Confidence            999999999999999999875

>TIGR02352 thiamin_ThiO glycine oxidase ThiO

Probab=98.62  E-value=1.1e-06  Score=79.24  Aligned_cols=65  Identities=15%  Similarity=0.186  Sum_probs=55.2

Q ss_pred             EeCCC---CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCcc
Q 019351          226 YPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       226 ~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~  291 (342)
                      ++.+|   ...++..|++.++++|++++.+++|++|..+ +++++.|.+++++++||+||+|+|++...
T Consensus       128 ~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~-~~~~~~v~~~~g~~~a~~vV~a~G~~~~~  195 (337)
T TIGR02352       128 YPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIR-GEKVTAIVTPSGDVQADQVVLAAGAWAGE  195 (337)
T ss_pred             cCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEee-CCEEEEEEcCCCEEECCEEEEcCChhhhh
Confidence            44444   5789999999999999999999999999886 67777888877799999999999988543

This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.

>PRK06370 mercuric reductase; Validated

Probab=98.61  E-value=3.8e-08  Score=92.73  Aligned_cols=43  Identities=30%  Similarity=0.458  Sum_probs=38.5

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+.+|||+|||||++|++||.+|++.|++|+|+|+. .+||.|.
T Consensus         2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~   44 (463)
T PRK06370          2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV   44 (463)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence            667899999999999999999999999999999996 5666654

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=98.61  E-value=4e-08  Score=92.77  Aligned_cols=44  Identities=25%  Similarity=0.428  Sum_probs=40.6

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      |...|||+|||||.+|+.||.+|++.|++|+|+|+. .+||.|..
T Consensus         1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~   44 (472)
T PRK05976          1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH   44 (472)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence            777899999999999999999999999999999996 78998854

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=98.60  E-value=3.9e-08  Score=91.55  Aligned_cols=49  Identities=18%  Similarity=0.236  Sum_probs=43.8

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCe-EEEEcCCCCCCCcCcccchHH
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGGESSSLNLIQ   50 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~-V~vlE~~~~~GG~~~t~~~~~   50 (342)
                      .+++||+|||||.+||++|++|.++|.. ++||||++.+||.++...+.+
T Consensus         6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry~~   55 (443)
T COG2072           6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRYPG   55 (443)
T ss_pred             CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccCCc
Confidence            4568999999999999999999999988 999999999999987765543

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.60  E-value=3.8e-08  Score=92.68  Aligned_cols=43  Identities=28%  Similarity=0.378  Sum_probs=39.8

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+ +|||+|||||.+|++||.+|+++|++|+|+|+++.+||.|.
T Consensus         1 m~-~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~   43 (466)
T PRK06115          1 MA-SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL   43 (466)
T ss_pred             CC-cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence            65 49999999999999999999999999999999888999874

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.59  E-value=4.4e-08  Score=91.77  Aligned_cols=57  Identities=18%  Similarity=0.222  Sum_probs=45.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|+++++++.|++|+.+ ++. ..+.++++++.+|.||+|+|..|+
T Consensus       199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~-~~~-v~v~~~~g~i~~D~vl~a~G~~pn  255 (441)
T PRK08010        199 RDIADNIATILRDQGVDIILNAHVERISHH-ENQ-VQVHSEHAQLAVDALLIASGRQPA  255 (441)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCE-EEEEEcCCeEEeCEEEEeecCCcC
Confidence            356677888888999999999999999875 444 345555567999999999998874

>TIGR00136 gidA glucose-inhibited division protein A

Probab=98.59  E-value=6e-07  Score=85.19  Aligned_cols=39  Identities=31%  Similarity=0.345  Sum_probs=34.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      |||+|||||++|+.||+.+++.|.+|+|+|++...+|.+
T Consensus         1 yDViVIGaG~AGl~aA~ala~~G~~v~Lie~~~~~~g~~   39 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAARMGAKTLLLTLNLDTIGKC   39 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCCEEEEecccccccCC
Confidence            699999999999999999999999999999975544443

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>PRK09897 hypothetical protein; Provisional

Probab=98.57  E-value=9.6e-07  Score=83.63  Aligned_cols=40  Identities=18%  Similarity=0.180  Sum_probs=34.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC--CeEEEEcCCCCCC-CcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYG-GESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~~~G-G~~~   44 (342)
                      .+|+|||||.+|+++|.+|.+.+  .+|+|+|++..+| |...
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~G~ay   44 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGVGMPY   44 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCcceee
Confidence            47999999999999999998865  5899999998888 5543

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=98.57  E-value=2.3e-06  Score=73.67  Aligned_cols=53  Identities=17%  Similarity=0.221  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCc--EEEcCEEEECCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKKVVCDPS  286 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~--~~~a~~vI~~~~  286 (342)
                      ++-+.|.+..++.|+.+..+.+|.+.+.. ++++..|.+ ++.  .++||..|+|+|
T Consensus       259 Rl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~-~~~v~~i~trn~~diP~~a~~~VLAsG  314 (421)
T COG3075         259 RLHNQLQRQFEQLGGLWMPGDEVKKATCK-GGRVTEIYTRNHADIPLRADFYVLASG  314 (421)
T ss_pred             hHHHHHHHHHHHcCceEecCCceeeeeee-CCeEEEEEecccccCCCChhHeeeecc
Confidence            45678888889999999999999999988 888888887 443  478998887765

>PLN02785 Protein HOTHEAD

Probab=98.57  E-value=1.8e-06  Score=83.10  Aligned_cols=34  Identities=38%  Similarity=0.644  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      .||+||||||.+|+++|.+|++ +.+|+|||++..
T Consensus        55 ~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~   88 (587)
T PLN02785         55 AYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV   88 (587)
T ss_pred             cCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence            5999999999999999999999 699999999764

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.56  E-value=6.8e-08  Score=91.11  Aligned_cols=44  Identities=32%  Similarity=0.518  Sum_probs=39.2

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      |+++|||+|||||.+|++||.+|++.|++|+|+|++ .+||.|..
T Consensus         1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~~   44 (466)
T PRK07818          1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCLN   44 (466)
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            666799999999999999999999999999999985 67777653

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=98.55  E-value=6.6e-08  Score=90.49  Aligned_cols=56  Identities=23%  Similarity=0.265  Sum_probs=43.5

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++++++++|++|+.+ ++. ..++.+++++.+|.||+|+|..|+
T Consensus       199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~-~~~-v~v~~~g~~i~~D~viva~G~~p~  254 (438)
T PRK07251        199 SVAALAKQYMEEDGITFLLNAHTTEVKND-GDQ-VLVVTEDETYRFDALLYATGRKPN  254 (438)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCEEEEEEec-CCE-EEEEECCeEEEcCEEEEeeCCCCC
Confidence            44555666777889999999999999865 443 345557788999999999988764

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=98.55  E-value=6.1e-08  Score=90.23  Aligned_cols=40  Identities=30%  Similarity=0.498  Sum_probs=34.0

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      ||||||||++|++||+.++++|.+|+|+|+.+.+||...+
T Consensus         1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~   40 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS   40 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred             CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence            8999999999999999999999999999999999997654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=98.55  E-value=6.8e-08  Score=92.84  Aligned_cols=43  Identities=26%  Similarity=0.475  Sum_probs=39.5

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |.+.|||+|||||.+||+||.+|+++|++|+|+|++ .+||.+.
T Consensus         1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~   43 (555)
T TIGR03143         1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT   43 (555)
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence            777899999999999999999999999999999996 6888764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=98.53  E-value=9.1e-08  Score=90.41  Aligned_cols=46  Identities=26%  Similarity=0.443  Sum_probs=41.3

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcC------CCCCCCcCccc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR------NDYYGGESSSL   46 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~------~~~~GG~~~t~   46 (342)
                      |+.+||++|||||.+|++||.+|++.|.+|+|+|+      ...+||.|...
T Consensus         1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n~   52 (475)
T PRK06327          1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLNV   52 (475)
T ss_pred             CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCccccc
Confidence            77789999999999999999999999999999998      46788887544

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=98.52  E-value=9.1e-08  Score=87.99  Aligned_cols=54  Identities=19%  Similarity=0.070  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          234 LPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       234 l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      +-..|.+.++. .|++++.+++|++++.+ ++.+. ++. +|.+++||.||.|.|..+
T Consensus       112 l~~~L~~~~~~~~~i~i~~~~~v~~~~~~-~~~~~-v~~~~g~~~~~~lvIgADG~~S  167 (384)
T PRK08849        112 IQLGLWQQFAQYPNLTLMCPEKLADLEFS-AEGNR-VTLESGAEIEAKWVIGADGANS  167 (384)
T ss_pred             HHHHHHHHHHhCCCeEEECCCceeEEEEc-CCeEE-EEECCCCEEEeeEEEEecCCCc
Confidence            44455555444 47999999999999887 45444 444 778999999999999875

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=98.52  E-value=8.5e-08  Score=89.89  Aligned_cols=56  Identities=18%  Similarity=0.143  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|+++++++.|++|..+ ++.. .+++ ++.++.+|.||+|+|..|+
T Consensus       208 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~-~v~~~~g~~i~~D~viva~G~~pn  264 (446)
T TIGR01424       208 DMRALLARNMEGRGIRIHPQTSLTSITKT-DDGL-KVTLSHGEEIVADVVLFATGRSPN  264 (446)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeE-EEEEcCCcEeecCEEEEeeCCCcC
Confidence            45556777778889999999999999865 3433 3444 6778999999999998764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=98.51  E-value=1e-07  Score=89.88  Aligned_cols=57  Identities=26%  Similarity=0.301  Sum_probs=44.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--cEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g--~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|+++++++.|++|+.+ ++++. +.+ +|  .++.+|.||+|+|..|+
T Consensus       211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~i~~D~vi~a~G~~p~  270 (461)
T TIGR01350       211 AEVSKVVAKALKKKGVKILTNTKVTAVEKN-DDQVV-YENKGGETETLTGEKVLVAVGRKPN  270 (461)
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEe-CCEEE-EEEeCCcEEEEEeCEEEEecCCccc
Confidence            356667778888899999999999999876 45544 443 55  47999999999998764

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=98.50  E-value=1e-07  Score=89.32  Aligned_cols=41  Identities=24%  Similarity=0.390  Sum_probs=37.4

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++|||+|||||.+|+.||..|++.|++|+|+|+. .+||.|.
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~-~~GG~c~   41 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAEHGAKALLVEAK-KLGGTCV   41 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCcEEEeccc-cccccee
Confidence            3699999999999999999999999999999995 6898764

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=98.49  E-value=1.1e-06  Score=80.86  Aligned_cols=64  Identities=19%  Similarity=0.167  Sum_probs=50.8

Q ss_pred             EEeCCC---CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCcc
Q 019351          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       225 ~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~~  291 (342)
                      +++.+|   ...++.+|.+++++ |++++++++|++|+.+ +++ +.|++ +|..++||+||+|+|.|...
T Consensus       125 ~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~-~~~-~~v~t~~g~~~~a~~vV~a~G~~~~~  192 (381)
T TIGR03197       125 FFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERD-GEG-WQLLDANGEVIAASVVVLANGAQAGQ  192 (381)
T ss_pred             EeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEc-CCe-EEEEeCCCCEEEcCEEEEcCCccccc
Confidence            344445   46889999999998 9999999999999876 555 55666 55569999999999988543

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=98.48  E-value=1.3e-07  Score=89.23  Aligned_cols=42  Identities=33%  Similarity=0.476  Sum_probs=38.6

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      .+|||+|||||.+|+.||..|+++|++|+|+|+.. +||.|..
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~   44 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN   44 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence            46999999999999999999999999999999987 8997643

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=98.48  E-value=1.4e-07  Score=88.95  Aligned_cols=42  Identities=31%  Similarity=0.494  Sum_probs=38.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |. +|||+|||||.+|++||.+|++.|++|+|+|+ +.+||.+.
T Consensus         1 m~-~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292          1 ME-KYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             CC-cccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence            54 49999999999999999999999999999999 68899765

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=98.48  E-value=1.2e-07  Score=85.44  Aligned_cols=43  Identities=28%  Similarity=0.410  Sum_probs=39.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN   47 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~   47 (342)
                      -+++|||||++|++||..|++.|++|.++||++.+||++..++
T Consensus       125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~  167 (622)
T COG1148         125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN  167 (622)
T ss_pred             cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence            3699999999999999999999999999999999999987543

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=98.47  E-value=1.4e-07  Score=86.85  Aligned_cols=32  Identities=28%  Similarity=0.546  Sum_probs=31.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      |||+|||||++|++||+.|+++|++|+|+|++
T Consensus         1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLARAGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            79999999999999999999999999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>KOG2852 consensus Possible oxidoreductase [General function prediction only]

Probab=98.46  E-value=8.9e-06  Score=68.88  Aligned_cols=41  Identities=17%  Similarity=0.354  Sum_probs=37.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC------CeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG------LKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G------~~V~vlE~~~~~GG~~~   44 (342)
                      ..+|+|||||+.|.++||+|++.+      ..|+++|+....||.+.
T Consensus        10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSG   56 (380)
T KOG2852|consen   10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASG   56 (380)
T ss_pred             ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccc
Confidence            468999999999999999999987      78999999999888764

>KOG2665 consensus Predicted FAD-dependent oxidoreductase [Function unknown]

Probab=98.46  E-value=8.9e-07  Score=75.71  Aligned_cols=61  Identities=20%  Similarity=0.254  Sum_probs=45.3

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCC--cE-EEEE-eCCcEEEcCEEEECCCCCCcc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEG--KV-VGVT-SEGETAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~--~~-~~v~-~~g~~~~a~~vI~~~~~~~~~  291 (342)
                      .+.++..+.+..+..|.++.+|-++..+..+.+.  .. +.|. ..+++++++.||.|++...+.
T Consensus       195 ~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~~~~Ypivv~ngk~ee~r~~~~vtc~gl~sdr  259 (453)
T KOG2665|consen  195 WGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEATFSYPIVVLNGKGEEKRTKNVVTCAGLQSDR  259 (453)
T ss_pred             hHHHHHHHHHHHHHhcccccccceeccchhccCCCCCCceEEecCccceeEEeEEEEeccccHhH
Confidence            4667778888888899999999999999875222  11 2222 256789999999999987543

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=98.45  E-value=1.6e-07  Score=87.74  Aligned_cols=34  Identities=21%  Similarity=0.358  Sum_probs=32.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ++||+|||||++|++||+.|+++|++|+|+|++.
T Consensus        39 ~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         39 KLRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            5899999999999999999999999999999974

>KOG1399 consensus Flavin-containing monooxygenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.44  E-value=1.7e-07  Score=86.44  Aligned_cols=43  Identities=28%  Similarity=0.328  Sum_probs=40.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~   46 (342)
                      ..+|+|||||.|||++|..|.+.|++|+||||.+.+||.+...
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            4699999999999999999999999999999999999988644

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=98.43  E-value=1.3e-05  Score=72.18  Aligned_cols=58  Identities=22%  Similarity=0.347  Sum_probs=48.5

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      ...++..+.+.++.+|++|+++|+|..|+.. ++.+..|.+ +|.++.||+||+|+|-..
T Consensus       172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~-~~~~~~v~~~~g~~i~~~~vvlA~Grsg  230 (486)
T COG2509         172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIE-DNEVLGVKLTKGEEIEADYVVLAPGRSG  230 (486)
T ss_pred             hHHHHHHHHHHHHhcCcEEEeeeEEEEEEec-CCceEEEEccCCcEEecCEEEEccCcch
Confidence            3466778899999999999999999999987 555666666 677999999999998653

>TIGR02028 ChlP geranylgeranyl reductase

Probab=98.42  E-value=2.4e-07  Score=85.52  Aligned_cols=38  Identities=18%  Similarity=0.286  Sum_probs=34.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      +||+|||||++|++||+.|+++|++|+|+|++...+..
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~~~   38 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNAKP   38 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCCCC
Confidence            58999999999999999999999999999998655433

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=98.42  E-value=2.3e-07  Score=82.20  Aligned_cols=39  Identities=28%  Similarity=0.448  Sum_probs=35.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |||+|||||++||+||..|++.|++|+|+|+++ +||...
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~   39 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLT   39 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCccee
Confidence            699999999999999999999999999999987 677654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PTZ00052 thioredoxin reductase; Provisional

Probab=98.42  E-value=2.4e-07  Score=87.88  Aligned_cols=57  Identities=14%  Similarity=0.172  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+.+.+.+.+++.|+++++++.|+++... ++.+.....+|+++.+|.||+++|..|+
T Consensus       223 ~~~~~l~~~l~~~GV~i~~~~~v~~v~~~-~~~~~v~~~~g~~i~~D~vl~a~G~~pn  279 (499)
T PTZ00052        223 QCSEKVVEYMKEQGTLFLEGVVPINIEKM-DDKIKVLFSDGTTELFDTVLYATGRKPD  279 (499)
T ss_pred             HHHHHHHHHHHHcCCEEEcCCeEEEEEEc-CCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence            45667778888899999999999999865 4443323336788999999999998774

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=98.42  E-value=2.3e-07  Score=93.10  Aligned_cols=41  Identities=22%  Similarity=0.278  Sum_probs=38.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..||+|||||++||+||++|++.|++|+|+|+++.+||...
T Consensus       537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~  577 (1012)
T TIGR03315       537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK  577 (1012)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence            36999999999999999999999999999999999999875

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PRK14694 putative mercuric reductase; Provisional

Probab=98.41  E-value=2.6e-07  Score=87.14  Aligned_cols=57  Identities=11%  Similarity=0.152  Sum_probs=45.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|+++++++.|++|+.+ ++ ...+.++++++.+|.||+|+|..|+
T Consensus       218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~-~~-~~~v~~~~~~i~~D~vi~a~G~~pn  274 (468)
T PRK14694        218 PAVGEAIEAAFRREGIEVLKQTQASEVDYN-GR-EFILETNAGTLRAEQLLVATGRTPN  274 (468)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CC-EEEEEECCCEEEeCEEEEccCCCCC
Confidence            356777888888899999999999999865 44 3445566668999999999998774

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=98.40  E-value=2.8e-07  Score=85.30  Aligned_cols=46  Identities=30%  Similarity=0.494  Sum_probs=42.1

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCccc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~   46 (342)
                      |+.+||++|||+|.+|..||.++++.|.+|+++|+...+||.|-..
T Consensus         1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln~   46 (454)
T COG1249           1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLNV   46 (454)
T ss_pred             CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEee
Confidence            6678999999999999999999999998899999999999988543

>PRK13748 putative mercuric reductase; Provisional

Probab=98.40  E-value=2.7e-07  Score=89.16  Aligned_cols=58  Identities=14%  Similarity=0.166  Sum_probs=45.8

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCcc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~  291 (342)
                      ..+...+.+.+++.|+++++++.|++|+.+ ++. ..+.++++++.+|.||+|+|..|+.
T Consensus       310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~-~~~-~~v~~~~~~i~~D~vi~a~G~~pn~  367 (561)
T PRK13748        310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHV-DGE-FVLTTGHGELRADKLLVATGRAPNT  367 (561)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEec-CCE-EEEEecCCeEEeCEEEEccCCCcCC
Confidence            356677778888899999999999999865 443 3455555689999999999988753

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=98.38  E-value=2.7e-07  Score=93.20  Aligned_cols=41  Identities=27%  Similarity=0.357  Sum_probs=38.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..+|+|||||+|||+||++|+++|++|+|||+.+.+||..+
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            36899999999999999999999999999999999999875

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=98.37  E-value=3.8e-07  Score=88.17  Aligned_cols=42  Identities=24%  Similarity=0.192  Sum_probs=37.6

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      |. ++||+|||+|++||+||..++++|.+|+|+||.+..||.+
T Consensus         1 ~~-~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s   42 (589)
T PRK08641          1 MA-KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS   42 (589)
T ss_pred             CC-CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence            44 4799999999999999999999999999999998877644

>TIGR02053 MerA mercuric reductase

Probab=98.36  E-value=3.9e-07  Score=85.93  Aligned_cols=39  Identities=23%  Similarity=0.423  Sum_probs=36.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |||+|||||.+|++||.+|+++|++|+|+|+.. +||.|-
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~   39 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV   39 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence            799999999999999999999999999999976 777764

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=98.35  E-value=4.1e-07  Score=80.05  Aligned_cols=44  Identities=27%  Similarity=0.362  Sum_probs=35.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCccc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~   46 (342)
                      +.+||+|||||++||+||.+++++|.+++|++....+||.....
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~   45 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT   45 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc
Confidence            35899999999999999999999999955555555666655443

>PRK12831 putative oxidoreductase; Provisional

Probab=98.35  E-value=4.5e-07  Score=85.18  Aligned_cols=41  Identities=24%  Similarity=0.234  Sum_probs=38.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..||+|||||++||+||++|++.|++|+|+|+.+.+||.+.
T Consensus       140 ~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        140 GKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            47999999999999999999999999999999999999874

>PTZ00058 glutathione reductase; Provisional

Probab=98.34  E-value=4.5e-07  Score=86.68  Aligned_cols=42  Identities=26%  Similarity=0.438  Sum_probs=38.1

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      .+|||+|||||.+|.+||..+++.|.+|+++|++ .+||.|-.
T Consensus        47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln   88 (561)
T PTZ00058         47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN   88 (561)
T ss_pred             ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence            3699999999999999999999999999999996 78997743

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=98.32  E-value=4.8e-07  Score=85.91  Aligned_cols=40  Identities=28%  Similarity=0.353  Sum_probs=35.3

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      .|+|||||++||++|..|.+.|++|++||+++.+||.++.
T Consensus         3 rVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~   42 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY   42 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred             EEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence            6999999999999999999999999999999999999863

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=98.31  E-value=5.2e-07  Score=84.40  Aligned_cols=57  Identities=11%  Similarity=0.087  Sum_probs=40.6

Q ss_pred             hHHHHHHHHHHHcC---cEEEcCCccceEEEc-----CCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYG---GTYMLNKPECKVEFD-----EEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G---~~i~~~~~V~~i~~~-----~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      .+...|.+.+++.+   ++++.+++|++++.+     +++..+.|+. +|++++||.||.|.|..+
T Consensus       118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~~~g~~i~a~llVgADG~~S  183 (437)
T TIGR01989       118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPNDNSNWVHITLSDGQVLYTKLLIGADGSNS  183 (437)
T ss_pred             HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccCCCCceEEEEcCCCEEEeeEEEEecCCCC
Confidence            45556666666654   899999999999752     1222234444 788999999999988764

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK14727 putative mercuric reductase; Provisional

Probab=98.29  E-value=6.4e-07  Score=84.76  Aligned_cols=43  Identities=19%  Similarity=0.309  Sum_probs=40.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~   46 (342)
                      ++||+|||+|.+|+++|..|++.|.+|+++|+++.+||.|...
T Consensus        16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n~   58 (479)
T PRK14727         16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVNV   58 (479)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEeccc
Confidence            5999999999999999999999999999999998999988643

>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]

Probab=98.28  E-value=8.3e-07  Score=78.91  Aligned_cols=39  Identities=21%  Similarity=0.348  Sum_probs=34.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      -+|+|||||++||++|..|++.|.+|+|+|++..+-|.-
T Consensus         3 ~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~R~~g   41 (420)
T KOG2614|consen    3 PKVVIVGGGIVGLATALALHRKGIDVVVLESREDPRGEG   41 (420)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccccccCC
Confidence            489999999999999999999999999999977654443

>PRK11445 putative oxidoreductase; Provisional

Probab=98.28  E-value=6.8e-07  Score=81.17  Aligned_cols=34  Identities=32%  Similarity=0.583  Sum_probs=32.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      |||+|||||++|+++|..|+++ ++|+|+|+++..
T Consensus         2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~   35 (351)
T PRK11445          2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC   35 (351)
T ss_pred             ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence            7999999999999999999999 999999998754

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=98.28  E-value=7.5e-07  Score=86.79  Aligned_cols=38  Identities=24%  Similarity=0.383  Sum_probs=34.7

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhh-CCCeEEEEcCCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDY   38 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~-~G~~V~vlE~~~~   38 (342)
                      |.+++||+|||||++||++|+.|++ .|.+|+|+|+++.
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~   67 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG   67 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence            5567999999999999999999999 5999999999864

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=98.28  E-value=7.5e-07  Score=81.25  Aligned_cols=37  Identities=22%  Similarity=0.437  Sum_probs=34.5

Q ss_pred             cEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCCCc
Q 019351            6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGE   42 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~GG~   42 (342)
                      ||+|||||++||++|+.|+++  |++|+|+|+++..||.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~   39 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN   39 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence            899999999999999999987  9999999999877763

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>PRK07538 hypothetical protein; Provisional

Probab=98.28  E-value=6.9e-07  Score=83.00  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=32.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      ||+|||||++||++|+.|+++|++|+|+|+++.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            8999999999999999999999999999998654

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=98.28  E-value=8.3e-07  Score=80.82  Aligned_cols=36  Identities=22%  Similarity=0.169  Sum_probs=33.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      .||+|||||++|+.||+.|+++|++|+|+|+++...
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~   38 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKK   38 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccC
Confidence            489999999999999999999999999999877654

>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]

Probab=98.28  E-value=7.2e-07  Score=79.03  Aligned_cols=45  Identities=27%  Similarity=0.304  Sum_probs=38.9

Q ss_pred             CcccEEEECCCchHHHHHHhhhhC------CCeEEEEcCCCCCCCcCcccc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVD------GLKVLHMDRNDYYGGESSSLN   47 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~------G~~V~vlE~~~~~GG~~~t~~   47 (342)
                      +++||+|||||.+||+||.+|.+.      -.+|+|+||+..+||.+-+-.
T Consensus        75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSGa  125 (621)
T KOG2415|consen   75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSGA  125 (621)
T ss_pred             ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecce
Confidence            469999999999999999998853      368999999999999876643

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=98.27  E-value=8.9e-07  Score=88.71  Aligned_cols=41  Identities=24%  Similarity=0.326  Sum_probs=38.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..+|+|||||.+||+||++|+++|++|+|+|+.+.+||...
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr  579 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK  579 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence            35899999999999999999999999999999999999875

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=98.26  E-value=1.5e-05  Score=74.88  Aligned_cols=57  Identities=21%  Similarity=0.176  Sum_probs=46.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+.+.+.+.+++.|++++++++|++|..  ++++..+.++++++.||.||+|+|..|+
T Consensus       191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~--~~~~~~v~~~~~~i~~d~vi~a~G~~p~  247 (444)
T PRK09564        191 KEITDVMEEELRENGVELHLNEFVKSLIG--EDKVEGVVTDKGEYEADVVIVATGVKPN  247 (444)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEec--CCcEEEEEeCCCEEEcCEEEECcCCCcC
Confidence            35667777888889999999999999964  3455666777778999999999998764

>PLN02507 glutathione reductase

Probab=98.26  E-value=9.1e-07  Score=83.94  Aligned_cols=56  Identities=21%  Similarity=0.187  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|+++++++.|++++.+ ++++. +.+ ++.++.+|.||+++|..|+
T Consensus       245 ~~~~~l~~~l~~~GI~i~~~~~V~~i~~~-~~~~~-v~~~~g~~i~~D~vl~a~G~~pn  301 (499)
T PLN02507        245 EMRAVVARNLEGRGINLHPRTNLTQLTKT-EGGIK-VITDHGEEFVADVVLFATGRAPN  301 (499)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEe-CCeEE-EEECCCcEEEcCEEEEeecCCCC
Confidence            45566667778889999999999999865 44433 444 6778999999999998764

>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit

Probab=98.25  E-value=4.3e-05  Score=73.12  Aligned_cols=60  Identities=17%  Similarity=0.132  Sum_probs=50.2

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CC--cEEEcCEEEECCCCCCcc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~~~~~  291 (342)
                      ...++.++++.|+++|++|+++++|++|..+ ++++++|++    +|  .+++|++||+|+|.|.+.
T Consensus       127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~  192 (516)
T TIGR03377       127 PFRLVAANVLDAQEHGARIFTYTKVTGLIRE-GGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGR  192 (516)
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHH
Confidence            4678899999999999999999999999887 677766654    23  379999999999998654

Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=98.25  E-value=1e-06  Score=83.16  Aligned_cols=58  Identities=21%  Similarity=0.234  Sum_probs=45.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+.+.+.+.+++.|+++++++.|++|..+ +++...++. +++++.+|.||+++|..|+
T Consensus       231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn  289 (486)
T TIGR01423       231 STLRKELTKQLRANGINIMTNENPAKVTLN-ADGSKHVTFESGKTLDVDVVMMAIGRVPR  289 (486)
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence            456677888888899999999999999865 333233443 6778999999999998764

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PTZ00367 squalene epoxidase; Provisional

Probab=98.24  E-value=9.9e-07  Score=84.40  Aligned_cols=34  Identities=38%  Similarity=0.641  Sum_probs=32.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ++||+|||||++|+++|+.|+++|++|+|+|++.
T Consensus        33 ~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~   66 (567)
T PTZ00367         33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL   66 (567)
T ss_pred             CccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence            5899999999999999999999999999999975

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=98.23  E-value=1.1e-06  Score=90.00  Aligned_cols=42  Identities=26%  Similarity=0.331  Sum_probs=39.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      .+||+|||||++||+||.+|+++|++|+|+|+++.+||....
T Consensus       163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            579999999999999999999999999999999999998753

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=98.22  E-value=1.2e-06  Score=82.07  Aligned_cols=41  Identities=22%  Similarity=0.233  Sum_probs=38.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..||+|||||.+||++|+.|++.|++|+|+|+.+.+||.+.
T Consensus       133 ~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       133 HKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            47999999999999999999999999999999999999764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=98.22  E-value=1.1e-06  Score=89.51  Aligned_cols=41  Identities=20%  Similarity=0.142  Sum_probs=38.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..||+|||||++||+||++|+++|++|+|+|+.+.+||..+
T Consensus       430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~  470 (1006)
T PRK12775        430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ  470 (1006)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence            36899999999999999999999999999999999999765

>PRK10262 thioredoxin reductase; Provisional

Probab=98.22  E-value=1.2e-06  Score=78.44  Aligned_cols=42  Identities=14%  Similarity=0.244  Sum_probs=36.9

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      ..+||+|||||++||+||..|+++|++|+++|+. ..||.+..
T Consensus         5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~   46 (321)
T PRK10262          5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT   46 (321)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence            4689999999999999999999999999999965 67876643

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.22  E-value=1.3e-06  Score=85.86  Aligned_cols=41  Identities=24%  Similarity=0.390  Sum_probs=38.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..+|+|||||.+||+||++|++.|++|+|+|+.+.+||...
T Consensus       327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~  367 (654)
T PRK12769        327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT  367 (654)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence            36899999999999999999999999999999999999864

>PLN02852 ferredoxin-NADP+ reductase

Probab=98.21  E-value=1.4e-06  Score=81.66  Aligned_cols=42  Identities=26%  Similarity=0.207  Sum_probs=38.6

Q ss_pred             cccEEEECCCchHHHHHHhhhh--CCCeEEEEcCCCCCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~--~G~~V~vlE~~~~~GG~~~t   45 (342)
                      ..+|+|||||++||.||..|++  .|++|+|+|+.+.+||..+.
T Consensus        26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            3589999999999999999987  79999999999999998864

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=98.21  E-value=1.2e-06  Score=84.55  Aligned_cols=35  Identities=20%  Similarity=0.364  Sum_probs=32.9

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +..+|+|||||++||++|..|+++|.+|+|+|+++
T Consensus        80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence            45899999999999999999999999999999975

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=98.20  E-value=1.4e-06  Score=79.84  Aligned_cols=37  Identities=22%  Similarity=0.154  Sum_probs=34.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      .||+|||||++|+.||+.|+++|.+|+|+|+++..+-
T Consensus         1 ~~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~   37 (433)
T TIGR00137         1 TPVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT   37 (433)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence            4899999999999999999999999999999877654

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PLN02546 glutathione reductase

Probab=98.19  E-value=1.7e-06  Score=82.88  Aligned_cols=43  Identities=19%  Similarity=0.186  Sum_probs=37.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcC---------CCCCCCcCccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR---------NDYYGGESSSL   46 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~---------~~~~GG~~~t~   46 (342)
                      +|||+|||+|.+|+.||..|++.|++|+|+|+         ...+||.|-..
T Consensus        79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n~  130 (558)
T PLN02546         79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVLR  130 (558)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccCc
Confidence            58999999999999999999999999999996         24678877543

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=98.17  E-value=1.9e-06  Score=85.97  Aligned_cols=41  Identities=24%  Similarity=0.305  Sum_probs=38.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..||+|||||++||+||++|+++|++|+|+|+.+.+||...
T Consensus       431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            46999999999999999999999999999999999999865

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=98.17  E-value=2e-06  Score=74.24  Aligned_cols=41  Identities=34%  Similarity=0.545  Sum_probs=36.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC--CCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--YYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~--~~GG~~~   44 (342)
                      .+||||||+|++||+||..|+.+|++|+|+|+..  .+||.+.
T Consensus         5 ~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQAf   47 (552)
T COG3573           5 TADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQAF   47 (552)
T ss_pred             cccEEEECccHHHHHHHHHHHhcCceEEEEcccccccccceee
Confidence            5899999999999999999999999999998854  4777653

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=98.16  E-value=2e-06  Score=83.61  Aligned_cols=42  Identities=31%  Similarity=0.436  Sum_probs=38.0

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCC-CCCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~-~~~GG~~~t   45 (342)
                      +|||+|||+|.+|..||..+++.|++|+|+|+. +.+||.|-.
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCvn  158 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCVN  158 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCccccceeE
Confidence            699999999999999999999999999999974 468997743

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=98.15  E-value=2.2e-06  Score=80.96  Aligned_cols=41  Identities=29%  Similarity=0.347  Sum_probs=38.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..||+|||||.+||++|..|++.|++|+|+|+.+.+||...
T Consensus       143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            36999999999999999999999999999999999998754

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=98.14  E-value=2.2e-06  Score=79.75  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYG   40 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~~G   40 (342)
                      +|+|||||++||++|..|+++| .+|+|+|+++.++
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~   37 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG   37 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence            6999999999999999999998 5999999987654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=98.12  E-value=2.6e-06  Score=81.19  Aligned_cols=43  Identities=26%  Similarity=0.281  Sum_probs=38.9

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..++||+|||||.+||.||..++++|.+|+|+||....+|.+.
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~   46 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTV   46 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchh
Confidence            4579999999999999999999999999999999988885544

>KOG1238 consensus Glucose dehydrogenase/choline dehydrogenase/mandelonitrile lyase (GMC oxidoreductase family) [General function prediction only]

Probab=98.12  E-value=0.00012  Score=69.09  Aligned_cols=37  Identities=32%  Similarity=0.522  Sum_probs=33.5

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYY   39 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~~   39 (342)
                      ..||.||||||-+|++.|.+|++.- .+|++||++..+
T Consensus        56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~   93 (623)
T KOG1238|consen   56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP   93 (623)
T ss_pred             cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence            4699999999999999999999975 899999997665

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=98.09  E-value=3.3e-06  Score=82.75  Aligned_cols=40  Identities=25%  Similarity=0.288  Sum_probs=38.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .+|+|||||++||++|+.|++.|++|+|+|+.+.+||...
T Consensus       194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            6899999999999999999999999999999999999864

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=98.08  E-value=3.9e-06  Score=78.97  Aligned_cols=41  Identities=24%  Similarity=0.278  Sum_probs=38.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..+|+|||||.+||++|..|++.|++|+|+|+.+.+||...
T Consensus       140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            36899999999999999999999999999999999998754

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=98.08  E-value=4e-06  Score=78.99  Aligned_cols=41  Identities=27%  Similarity=0.407  Sum_probs=38.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..+|+|||+|.+||++|..|++.|++|+|+|+.+.+||...
T Consensus       141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            36899999999999999999999999999999999999765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=98.06  E-value=3.7e-06  Score=82.28  Aligned_cols=41  Identities=27%  Similarity=0.346  Sum_probs=38.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..+|+|||+|++||++|+.|++.|++|+|+|+.+.+||...
T Consensus       310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            46899999999999999999999999999999999999865

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=98.04  E-value=4.9e-06  Score=78.71  Aligned_cols=57  Identities=14%  Similarity=-0.006  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCC---cEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG---ETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g---~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++|++++.++++... ++.+....+++   +++.||.||+++|..|+
T Consensus       221 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn  280 (484)
T TIGR01438       221 DCANKVGEHMEEHGVKFKRQFVPIKVEQI-EAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC  280 (484)
T ss_pred             HHHHHHHHHHHHcCCEEEeCceEEEEEEc-CCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence            45667777888889999999999999865 44433222343   37999999999998764

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=98.03  E-value=4.3e-06  Score=77.62  Aligned_cols=41  Identities=27%  Similarity=0.233  Sum_probs=39.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      -+|+|||||++||.||+.|+++|++|+|+|+.+.+||+...
T Consensus       124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            47999999999999999999999999999999999999863

>PTZ00188 adrenodoxin reductase; Provisional

Probab=98.02  E-value=5.6e-06  Score=76.72  Aligned_cols=42  Identities=17%  Similarity=0.078  Sum_probs=37.5

Q ss_pred             ccEEEECCCchHHHHHHhhh-hCCCeEEEEcCCCCCCCcCccc
Q 019351            5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRNDYYGGESSSL   46 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~-~~G~~V~vlE~~~~~GG~~~t~   46 (342)
                      ..|+|||||++||.||.+|. +.|++|+|+|+.+.+||..+..
T Consensus        40 krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         40 FKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence            47999999999999999764 6799999999999999988653

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=98.02  E-value=5.4e-06  Score=68.83  Aligned_cols=31  Identities=29%  Similarity=0.432  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ||+|||||.+|++||.+|++.|.+|+++|+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~   31 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELARPGAKVLIIEKS   31 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEESSS
T ss_pred             CEEEEecHHHHHHHHHHHhcCCCeEEEEecc
Confidence            7999999999999999999999999999875

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=97.96  E-value=8.1e-06  Score=78.90  Aligned_cols=56  Identities=16%  Similarity=0.141  Sum_probs=40.4

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCC--CcEEEEEe----CCc--EEEcCEEEECCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEE--GKVVGVTS----EGE--TAKCKKVVCDPSYL  288 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~--~~~~~v~~----~g~--~~~a~~vI~~~~~~  288 (342)
                      .+...+...++..+++|+.++.|+++..+++  +++++|..    ++.  .+.|+.||+|+|-+
T Consensus       127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~  190 (614)
T TIGR02061       127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGA  190 (614)
T ss_pred             hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence            4444555555666789999999999987622  68888764    343  57899999998743

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=97.96  E-value=8.4e-06  Score=81.07  Aligned_cols=38  Identities=26%  Similarity=0.221  Sum_probs=34.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      .+|+|||||++||+||++|++.|++|+|+|+.+..|+.
T Consensus       384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            58999999999999999999999999999998776554

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=97.95  E-value=8.4e-06  Score=77.12  Aligned_cols=40  Identities=28%  Similarity=0.336  Sum_probs=37.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .+|+|||+|++|+++|..|+++|++|+|+|+.+++||...
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            6899999999999999999999999999999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.94  E-value=1.5e-05  Score=55.63  Aligned_cols=35  Identities=29%  Similarity=0.357  Sum_probs=33.4

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      .|+|||||..|+-+|..|++.|.+|+++|+++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred             CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence            48999999999999999999999999999998887

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=97.94  E-value=1.1e-05  Score=73.34  Aligned_cols=41  Identities=24%  Similarity=0.275  Sum_probs=38.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..+|+|||+|.+|+.+|..|++.|++|+++|+.+.+||...
T Consensus        18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   58 (352)
T PRK12770         18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML   58 (352)
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence            36899999999999999999999999999999999998764

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=97.92  E-value=9.6e-06  Score=78.37  Aligned_cols=40  Identities=23%  Similarity=0.165  Sum_probs=37.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      -+|+|||+|++||++|+.|++.|++|+|+|+.+.+||..+
T Consensus       138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            5899999999999999999999999999999999999764

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=97.92  E-value=1.1e-05  Score=76.09  Aligned_cols=56  Identities=9%  Similarity=0.046  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCC--cEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG--ETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g--~~~~a~~vI~~~~~~~~  290 (342)
                      .+.+.+.+.+++.|+++++++.|++|+.+ +.. ..+..++  .++.+|.||+|+|..|+
T Consensus       212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~-~~~-v~~~~~g~~~~i~~D~vivA~G~~p~  269 (458)
T PRK06912        212 DIAHILREKLENDGVKIFTGAALKGLNSY-KKQ-ALFEYEGSIQEVNAEFVLVSVGRKPR  269 (458)
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEc-CCE-EEEEECCceEEEEeCEEEEecCCccC
Confidence            56667778888899999999999999765 332 3344444  36999999999998764

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=97.85  E-value=1.7e-05  Score=80.69  Aligned_cols=35  Identities=23%  Similarity=0.405  Sum_probs=33.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ++||+|||||.+||+||..++++|.+|+|+||...
T Consensus        13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~   47 (897)
T PRK13800         13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV   47 (897)
T ss_pred             ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence            58999999999999999999999999999999875

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.84  E-value=0.00024  Score=65.04  Aligned_cols=40  Identities=13%  Similarity=0.255  Sum_probs=33.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC---CeEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG---LKVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G---~~V~vlE~~~~~GG~~~   44 (342)
                      ++|+|||+|.+|+++|..|.+.-   ..|.|+|+.+..|+-..
T Consensus         2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia   44 (474)
T COG4529           2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA   44 (474)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence            68999999999999999999752   23999999988876554

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=97.82  E-value=4.9e-05  Score=68.40  Aligned_cols=34  Identities=38%  Similarity=0.569  Sum_probs=26.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~   37 (342)
                      .+|+|+||.|+++|+.|..|.+.+ .+++.||+++
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~   36 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP   36 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence            589999999999999999999987 9999999863

>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism]

Probab=97.82  E-value=1.7e-05  Score=78.35  Aligned_cols=40  Identities=25%  Similarity=0.318  Sum_probs=38.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..|+|||+|.+||.||-+|-+.|+.|+|+|+.+++||...
T Consensus      1786 ~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1786 KRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred             cEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence            6799999999999999999999999999999999999886

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=97.80  E-value=1.9e-05  Score=78.87  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=31.5

Q ss_pred             cEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~   38 (342)
                      +|+|||||++||++|..|+++  |++|+|+|+++.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            799999999999999999998  899999999886

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.79  E-value=2.4e-05  Score=73.79  Aligned_cols=57  Identities=19%  Similarity=0.200  Sum_probs=44.2

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|+++++++.|++|+.+ ++++.....+|.++.+|.||+++|..|+
T Consensus       219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~-~~~~~v~~~~g~~l~~D~vl~a~G~~pn  275 (466)
T PRK07845        219 DAAEVLEEVFARRGMTVLKRSRAESVERT-GDGVVVTLTDGRTVEGSHALMAVGSVPN  275 (466)
T ss_pred             HHHHHHHHHHHHCCcEEEcCCEEEEEEEe-CCEEEEEECCCcEEEecEEEEeecCCcC
Confidence            45566777778889999999999999865 4444433347788999999999998764

>PRK13984 putative oxidoreductase; Provisional

Probab=97.79  E-value=2.4e-05  Score=76.30  Aligned_cols=41  Identities=20%  Similarity=0.220  Sum_probs=38.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..+|+|||+|.+|+++|..|+++|++|+|+|+.+.+||...
T Consensus       283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            46899999999999999999999999999999999998754

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=97.77  E-value=2.6e-05  Score=68.66  Aligned_cols=42  Identities=26%  Similarity=0.437  Sum_probs=39.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      ++||+|||+|+.|-.||...++.|++...+|++...||.|-.
T Consensus        39 d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcLn   80 (506)
T KOG1335|consen   39 DYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCLN   80 (506)
T ss_pred             cCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceeee
Confidence            599999999999999999999999999999999999998854

>PRK07846 mycothione reductase; Reviewed

Probab=97.72  E-value=3.5e-05  Score=72.37  Aligned_cols=54  Identities=20%  Similarity=0.278  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      +.+.+.+. .+.|++++++++|++++.+ ++++ .+++ ++.++.+|.||+|+|..|+
T Consensus       209 ~~~~l~~l-~~~~v~i~~~~~v~~i~~~-~~~v-~v~~~~g~~i~~D~vl~a~G~~pn  263 (451)
T PRK07846        209 ISERFTEL-ASKRWDVRLGRNVVGVSQD-GSGV-TLRLDDGSTVEADVLLVATGRVPN  263 (451)
T ss_pred             HHHHHHHH-HhcCeEEEeCCEEEEEEEc-CCEE-EEEECCCcEeecCEEEEEECCccC
Confidence            33344332 3568999999999999865 4443 3444 6778999999999998764

>KOG2960 consensus Protein involved in thiamine biosynthesis and DNA damage tolerance [General function prediction only]

Probab=97.70  E-value=1.4e-05  Score=64.60  Aligned_cols=41  Identities=24%  Similarity=0.345  Sum_probs=36.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~   44 (342)
                      +.||+|||+|-+||+|||..+++  ..+|.++|+.-.+||-++
T Consensus        76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaW  118 (328)
T KOG2960|consen   76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAW  118 (328)
T ss_pred             ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCccc
Confidence            47999999999999999999955  489999999998888765

>TIGR03452 mycothione_red mycothione reductase

Probab=97.69  E-value=4e-05  Score=72.02  Aligned_cols=54  Identities=22%  Similarity=0.300  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      +...+.+. ...|+++++++.|++++.+ ++++. ++. +|.++.+|.||+++|..|+
T Consensus       212 ~~~~l~~~-~~~gI~i~~~~~V~~i~~~-~~~v~-v~~~~g~~i~~D~vl~a~G~~pn  266 (452)
T TIGR03452       212 ISDRFTEI-AKKKWDIRLGRNVTAVEQD-GDGVT-LTLDDGSTVTADVLLVATGRVPN  266 (452)
T ss_pred             HHHHHHHH-HhcCCEEEeCCEEEEEEEc-CCeEE-EEEcCCCEEEcCEEEEeeccCcC
Confidence            34444443 3468999999999999865 44433 443 6778999999999998764

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=97.63  E-value=4.9e-05  Score=70.19  Aligned_cols=36  Identities=36%  Similarity=0.419  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      |...|||||||||++|+-||+..++.|.+++++--+
T Consensus         1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~   36 (621)
T COG0445           1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN   36 (621)
T ss_pred             CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence            556799999999999999999999999999998664

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.59  E-value=0.00084  Score=63.40  Aligned_cols=35  Identities=17%  Similarity=0.294  Sum_probs=31.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+|+|||||.+|+-+|..|++.|.+|+++|+.+.+
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  205 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRI  205 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCC
Confidence            47999999999999999999999999999987543

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.59  E-value=0.00084  Score=63.42  Aligned_cols=35  Identities=23%  Similarity=0.497  Sum_probs=31.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -.|+|||||..|+-+|..|++.|.+|+++|+++++
T Consensus       176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~  210 (461)
T PRK05249        176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRL  210 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCc
Confidence            36999999999999999999999999999997544

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=97.56  E-value=8.6e-05  Score=67.89  Aligned_cols=34  Identities=21%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      ||+|||+|++||++|..|++. ++|+|+-|.+.--
T Consensus         9 dV~IiGsG~AGL~~AL~L~~~-~~V~vltk~~~~~   42 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAPS-FRVTVLTKGPLGE   42 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCCC-CcEEEEeCCCCCC
Confidence            999999999999999999998 9999999976654

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.53  E-value=0.0012  Score=62.49  Aligned_cols=47  Identities=23%  Similarity=0.179  Sum_probs=35.3

Q ss_pred             HHcCcEEEcCCccceEEEcCCCcEEEEEeCC---cEEEcCEEEECCCCCCc
Q 019351          243 AVYGGTYMLNKPECKVEFDEEGKVVGVTSEG---ETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       243 ~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g---~~~~a~~vI~~~~~~~~  290 (342)
                      ++.|+++++++.|++|+.+ ++.+.....++   .++.+|.||+|+|..|+
T Consensus       224 ~~~gV~i~~~~~V~~i~~~-~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~  273 (462)
T PRK06416        224 KKRGIKIKTGAKAKKVEQT-DDGVTVTLEDGGKEETLEADYVLVAVGRRPN  273 (462)
T ss_pred             HHcCCEEEeCCEEEEEEEe-CCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence            4458999999999999865 44443222345   57999999999998774

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.00017  Score=62.44  Aligned_cols=39  Identities=18%  Similarity=0.255  Sum_probs=34.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      .-|.|||||++|.-|||+++++|..|.++|.++.-+-..
T Consensus         4 ~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~Tpa   42 (439)
T COG1206           4 QPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPA   42 (439)
T ss_pred             CceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCc
Confidence            479999999999999999999999999999987766443

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=97.35  E-value=0.00024  Score=65.72  Aligned_cols=56  Identities=20%  Similarity=0.108  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|+++++++.|+++..  ++.+.....+|+++.||.||+++|..|+
T Consensus       187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~--~~~~~v~l~~g~~i~aD~Vv~a~G~~pn  242 (396)
T PRK09754        187 PVQRYLLQRHQQAGVRILLNNAIEHVVD--GEKVELTLQSGETLQADVVIYGIGISAN  242 (396)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEEc--CCEEEEEECCCCEEECCEEEECCCCChh
Confidence            3445667777888999999999999964  2333323347788999999999998874

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=97.30  E-value=0.0033  Score=59.43  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=31.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      .++|||+|..|+-+|..|++.|.+|+++|+.+++
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~  212 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRV  212 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcC
Confidence            6999999999999999999999999999986544

>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.00026  Score=61.52  Aligned_cols=33  Identities=30%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~   35 (342)
                      .+||.||||||-+||+||.+.+..|.+|.+||-
T Consensus        18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDf   50 (503)
T KOG4716|consen   18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDF   50 (503)
T ss_pred             CCccEEEEcCCcchhhHHHHHHhcCCcEEEEee
Confidence            369999999999999999999999999999997

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=97.26  E-value=0.0003  Score=65.88  Aligned_cols=53  Identities=13%  Similarity=0.085  Sum_probs=41.3

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|+++++++.|++++.   ..  .+..+|+++.+|.||+++|..|+
T Consensus       190 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~---~~--v~~~~g~~~~~D~vl~a~G~~pn  242 (438)
T PRK13512        190 DMNQPILDELDKREIPYRLNEEIDAING---NE--VTFKSGKVEHYDMIIEGVGTHPN  242 (438)
T ss_pred             HHHHHHHHHHHhcCCEEEECCeEEEEeC---CE--EEECCCCEEEeCEEEECcCCCcC
Confidence            4566777888889999999999999852   22  22236778999999999998764

>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]

Probab=97.23  E-value=0.00042  Score=61.26  Aligned_cols=43  Identities=14%  Similarity=-0.018  Sum_probs=38.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCCCcCccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSSL   46 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~t~   46 (342)
                      ...|+|||+|+||+-+|+.|-++  +.+|.|+|+.+.++|..+.-
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyG   64 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYG   64 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeec
Confidence            35899999999999999998884  58999999999999998754

>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=97.20  E-value=0.0004  Score=63.10  Aligned_cols=34  Identities=29%  Similarity=0.526  Sum_probs=30.7

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|||||||||++|+-||...++-|.+.+++-.+
T Consensus        27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~   60 (679)
T KOG2311|consen   27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN   60 (679)
T ss_pred             CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence            4689999999999999999999999988888664

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=97.19  E-value=0.00043  Score=64.60  Aligned_cols=53  Identities=19%  Similarity=0.029  Sum_probs=41.4

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.++++|++++++++|+++..   +.  .+..+|+++.||.||.++|..|.
T Consensus       229 ~~~~~~~~~L~~~gV~v~~~~~v~~v~~---~~--v~~~~g~~i~~d~vi~~~G~~~~  281 (424)
T PTZ00318        229 ALRKYGQRRLRRLGVDIRTKTAVKEVLD---KE--VVLKDGEVIPTGLVVWSTGVGPG  281 (424)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEeC---CE--EEECCCCEEEccEEEEccCCCCc
Confidence            4566777888899999999999999853   22  22347889999999999987654

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=97.10  E-value=0.0005  Score=63.68  Aligned_cols=40  Identities=28%  Similarity=0.337  Sum_probs=38.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .+++|||+|..||.+|..|+++|++|+++|+.+++||...
T Consensus       137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~  176 (415)
T COG0446         137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL  176 (415)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence            4899999999999999999999999999999999999875

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.07  E-value=0.0038  Score=56.03  Aligned_cols=36  Identities=36%  Similarity=0.502  Sum_probs=33.0

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~   36 (342)
                      |++.+|+|.||-|++-|+.|+.|.+++ .+++.||+.
T Consensus         2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerk   38 (436)
T COG3486           2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERK   38 (436)
T ss_pred             CCcceeeEEEccCchHHHHHHHhccccCcceEEEecC
Confidence            566799999999999999999999986 889999996

>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.92  E-value=0.001  Score=58.20  Aligned_cols=42  Identities=21%  Similarity=0.279  Sum_probs=39.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      +||..|||||-.|+.+|.+.+..|.+|.|+|..-.+||.|-.
T Consensus        20 ~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn   61 (478)
T KOG0405|consen   20 DFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN   61 (478)
T ss_pred             ccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence            699999999999999999999999999999999899998743

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=96.88  E-value=0.0036  Score=56.74  Aligned_cols=112  Identities=18%  Similarity=0.196  Sum_probs=69.8

Q ss_pred             CCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccC-CCceEEeCCCCChHHHHHHHH
Q 019351          163 TRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQG-GSPYIYPLYGLGELPQAFARL  241 (342)
Q Consensus       163 ~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~gG~~~l~~~l~~~  241 (342)
                      ...|..+||++.|+++.+.+.+.....   ..+|.......++..+..+       .| ....+-++||..++++.|.+.
T Consensus        68 t~~t~~e~L~~~gi~~~fi~Elv~a~t---RvNYgQ~~~i~a~~G~vSl-------a~a~~gl~sV~GGN~qI~~~ll~~  137 (368)
T PF07156_consen   68 TKVTGEEYLKENGISERFINELVQAAT---RVNYGQNVNIHAFAGLVSL-------AGATGGLWSVEGGNWQIFEGLLEA  137 (368)
T ss_pred             HHHHHHHHHHHCCCCHHHHHHHHHhhe---Eeecccccchhhhhhheee-------eeccCCceEecCCHHHHHHHHHHH
Confidence            467889999999999988865543332   2334332222222222111       12 344567899999999999985


Q ss_pred             HHHcCcEEEcCCccceE-EEcCCCc-EEEEEe---CCc-EEEcCEEEECCCCC
Q 019351          242 SAVYGGTYMLNKPECKV-EFDEEGK-VVGVTS---EGE-TAKCKKVVCDPSYL  288 (342)
Q Consensus       242 ~~~~G~~i~~~~~V~~i-~~~~~~~-~~~v~~---~g~-~~~a~~vI~~~~~~  288 (342)
                      .   |+++ ++++|++| ...+++. ...|+.   .+. .-..|.||+|+++.
T Consensus       138 S---~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl~  186 (368)
T PF07156_consen  138 S---GANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPLQ  186 (368)
T ss_pred             c---cCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCcc
Confidence            4   8999 99999999 4432332 223333   222 23469999999874

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=96.88  E-value=0.0013  Score=60.45  Aligned_cols=56  Identities=16%  Similarity=0.232  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++++++++|+++..+ ++. +.+.+ +|.++.||.||+|+|..|+
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~D~vI~a~G~~p~  240 (377)
T PRK04965        184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKT-DSG-IRATLDSGRSIEVDAVIAAAGLRPN  240 (377)
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEcc-CCE-EEEEEcCCcEEECCEEEECcCCCcc
Confidence            35566777788889999999999999865 443 34444 7789999999999998764

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=96.74  E-value=0.0017  Score=59.29  Aligned_cols=52  Identities=15%  Similarity=0.171  Sum_probs=40.8

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.++++|+++++++.|+++.   ++   .+.+ +|.++.+|.||+|+|..|.
T Consensus       192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~---~~---~v~~~~g~~i~~D~vi~a~G~~p~  244 (364)
T TIGR03169       192 KVRRLVLRLLARRGIEVHEGAPVTRGP---DG---ALILADGRTLPADAILWATGARAP  244 (364)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeeEEEc---CC---eEEeCCCCEEecCEEEEccCCChh
Confidence            455667778888999999999999884   22   2333 7789999999999997764

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=96.65  E-value=0.0021  Score=51.14  Aligned_cols=32  Identities=28%  Similarity=0.449  Sum_probs=30.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|+|||||..|.++|..|+++|++|.++.++.
T Consensus         1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~   32 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE   32 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence            48999999999999999999999999998864

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=96.64  E-value=0.0025  Score=58.15  Aligned_cols=54  Identities=26%  Similarity=0.292  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCc-EEEcCEEEECCCCCCcc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-TAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~-~~~a~~vI~~~~~~~~~  291 (342)
                      .++.....+.++++|++|+++++|++|+.+  +    |++ +|+ +|.|+.||-|+|..+..
T Consensus       209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~--~----v~~~~g~~~I~~~tvvWaaGv~a~~  264 (405)
T COG1252         209 PKLSKYAERALEKLGVEVLLGTPVTEVTPD--G----VTLKDGEEEIPADTVVWAAGVRASP  264 (405)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECCC--c----EEEccCCeeEecCEEEEcCCCcCCh
Confidence            355566667778899999999999999643  2    333 455 59999999999987543

>KOG3855 consensus Monooxygenase involved in coenzyme Q (ubiquinone) biosynthesis [Coenzyme transport and metabolism; Energy production and conversion]

Probab=96.64  E-value=0.0022  Score=57.45  Aligned_cols=40  Identities=30%  Similarity=0.439  Sum_probs=33.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC----CeEEEEcCC--CCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG----LKVLHMDRN--DYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G----~~V~vlE~~--~~~GG~~   43 (342)
                      +|||+|+|||+.|++.|..|...-    ++|+++|..  +..++.-
T Consensus        36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s~kl~~~~   81 (481)
T KOG3855|consen   36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDSPKLGDFK   81 (481)
T ss_pred             cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccCccccccc
Confidence            699999999999999999999653    699999998  4445433

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.55  E-value=0.0027  Score=51.87  Aligned_cols=32  Identities=25%  Similarity=0.441  Sum_probs=26.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|+|||.|..||.+|..|+++|++|+.+|.++
T Consensus         2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~   33 (185)
T PF03721_consen    2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE   33 (185)
T ss_dssp             EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred             EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence            69999999999999999999999999999974

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=96.36  E-value=0.0044  Score=62.56  Aligned_cols=58  Identities=10%  Similarity=0.055  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCcc
Q 019351          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~~  291 (342)
                      ....+.+.++++|+++++++.|++|..++++....+.. +|.++.+|.||+++|..|+.
T Consensus       189 ~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn~  247 (847)
T PRK14989        189 GGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQD  247 (847)
T ss_pred             HHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccCc
Confidence            34566777888999999999999997542233444554 78899999999999988753

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=96.34  E-value=0.0042  Score=57.42  Aligned_cols=39  Identities=18%  Similarity=0.191  Sum_probs=35.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      -+|+|||+|..|+-+|..|++.|.+|+|+|+.+++.++.
T Consensus       145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~~  183 (396)
T PRK09754        145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGRN  183 (396)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhhh
Confidence            369999999999999999999999999999998876543

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=96.34  E-value=0.0046  Score=50.32  Aligned_cols=31  Identities=29%  Similarity=0.433  Sum_probs=27.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .|.|||+|..|...|..++.+|++|+++|.+
T Consensus         1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~   31 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRS   31 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHHHTTSEEEEE-SS
T ss_pred             CEEEEcCCHHHHHHHHHHHhCCCcEEEEECC
Confidence            4899999999999999999999999999995

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=96.28  E-value=0.0032  Score=51.74  Aligned_cols=46  Identities=20%  Similarity=0.291  Sum_probs=37.9

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcC---CC-CCCCcCcccc
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR---ND-YYGGESSSLN   47 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~---~~-~~GG~~~t~~   47 (342)
                      .....|+|||+|+++-+||.+++++-.+-+++|.   ++ -+||...|-+
T Consensus         6 ~h~e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT   55 (322)
T KOG0404|consen    6 THNENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT   55 (322)
T ss_pred             eeeeeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee
Confidence            3445899999999999999999999999999997   33 3577776654

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.28  E-value=0.0046  Score=58.40  Aligned_cols=34  Identities=32%  Similarity=0.366  Sum_probs=31.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      .|.|||.|.+|+++|..|.++|++|+++|++...
T Consensus         2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~   35 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP   35 (459)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence            5899999999999999999999999999998764

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.21  E-value=0.0064  Score=47.88  Aligned_cols=30  Identities=20%  Similarity=0.448  Sum_probs=28.4

Q ss_pred             EEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         7 ViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      |+|+|+|..|+..|++|+++|++|.++-+.
T Consensus         1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~   30 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS   30 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred             CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence            689999999999999999999999999884

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.17  E-value=0.0056  Score=58.14  Aligned_cols=34  Identities=26%  Similarity=0.306  Sum_probs=31.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -.|+|||+|.+|+.+|..|+++|++|+++|+++.
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~   50 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD   50 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            3699999999999999999999999999998754

>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family

Probab=96.07  E-value=0.017  Score=52.64  Aligned_cols=59  Identities=15%  Similarity=0.141  Sum_probs=46.1

Q ss_pred             EEeCC-CCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCcEEEcCEEEECCCC
Q 019351          225 IYPLY-GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKKVVCDPSY  287 (342)
Q Consensus       225 ~~~~g-G~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~~~~a~~vI~~~~~  287 (342)
                      .||.- -...++++|.+.+++.|++|+++++|++|  + +++ ..+.+  ++.+++||+||+|+|-
T Consensus        78 vfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~-~~~-~~v~~~~~~~~~~a~~vIlAtGG  139 (376)
T TIGR03862        78 VFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--Q-GGT-LRFETPDGQSTIEADAVVLALGG  139 (376)
T ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--e-CCc-EEEEECCCceEEecCEEEEcCCC
Confidence            46633 46789999999999999999999999999  3 333 45665  3357999999998863

This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=96.04  E-value=0.0083  Score=56.28  Aligned_cols=38  Identities=21%  Similarity=0.158  Sum_probs=34.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      -+|+|||||..|+.+|..|++.|.+|+++|+.+++.+.
T Consensus       158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~  195 (438)
T PRK07251        158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR  195 (438)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence            36999999999999999999999999999998876544

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=95.97  E-value=0.0046  Score=54.24  Aligned_cols=38  Identities=24%  Similarity=0.466  Sum_probs=31.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      .|||+|||||++|-+||.+.++.|.+.=++  ..+.||..
T Consensus       211 ~yDVLvVGgGPAgaaAAiYaARKGiRTGl~--aerfGGQv  248 (520)
T COG3634         211 AYDVLVVGGGPAGAAAAIYAARKGIRTGLV--AERFGGQV  248 (520)
T ss_pred             CceEEEEcCCcchhHHHHHHHhhcchhhhh--hhhhCCee
Confidence            499999999999999999999999876554  23577754

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=95.97  E-value=0.0079  Score=57.00  Aligned_cols=36  Identities=17%  Similarity=0.253  Sum_probs=33.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+|+|||||.+|+-+|..|++.|.+|+++|+++++.
T Consensus       181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il  216 (472)
T PRK05976        181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL  216 (472)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC
Confidence            379999999999999999999999999999987754

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.95  E-value=0.01  Score=52.39  Aligned_cols=37  Identities=24%  Similarity=0.226  Sum_probs=32.8

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |.....|+|||+|..|...|..|+++|++|+++|.++
T Consensus         1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (292)
T PRK07530          1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA   37 (292)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            4444679999999999999999999999999999863

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=95.92  E-value=0.0077  Score=53.62  Aligned_cols=32  Identities=22%  Similarity=0.306  Sum_probs=30.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|.|||+|..|.+.|..|+++|++|+++|+++
T Consensus         4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence            69999999999999999999999999999874

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=95.84  E-value=0.012  Score=52.54  Aligned_cols=34  Identities=24%  Similarity=0.371  Sum_probs=31.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ...|+|||+|..|...|+.|+++|++|+++.++.
T Consensus         5 ~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~   38 (313)
T PRK06249          5 TPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD   38 (313)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3589999999999999999999999999998854

>TIGR02053 MerA mercuric reductase

Probab=95.75  E-value=0.011  Score=55.83  Aligned_cols=37  Identities=22%  Similarity=0.201  Sum_probs=33.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  203 (463)
T TIGR02053       167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP  203 (463)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC
Confidence            4799999999999999999999999999999877643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.75  E-value=0.012  Score=51.73  Aligned_cols=34  Identities=21%  Similarity=0.288  Sum_probs=31.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ..|+|||+|..|...|..|+.+|++|+++|.++.
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~   39 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE   39 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence            4799999999999999999999999999998643

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=95.73  E-value=0.0099  Score=59.86  Aligned_cols=54  Identities=19%  Similarity=0.226  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          235 PQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       235 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      ...+.+.++++|+++++++.|++|..+  +++..|+. +|+++.+|.||+++|..|+
T Consensus       185 ~~~l~~~l~~~GV~v~~~~~v~~i~~~--~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn  239 (785)
T TIGR02374       185 GRLLQRELEQKGLTFLLEKDTVEIVGA--TKADRIRFKDGSSLEADLIVMAAGIRPN  239 (785)
T ss_pred             HHHHHHHHHHcCCEEEeCCceEEEEcC--CceEEEEECCCCEEEcCEEEECCCCCcC
Confidence            445667778889999999999999754  44555655 7889999999999998874

>KOG3923 consensus D-aspartate oxidase [Amino acid transport and metabolism]

Probab=95.70  E-value=0.012  Score=50.57  Aligned_cols=33  Identities=15%  Similarity=0.045  Sum_probs=27.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-------CeEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-------~~V~vlE~~   36 (342)
                      ..+|+|||+|+.||++|..+.+.+       .+|+|++-+
T Consensus         3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Dr   42 (342)
T KOG3923|consen    3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDR   42 (342)
T ss_pred             CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCC
Confidence            368999999999999998888744       578888664

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=95.67  E-value=0.013  Score=55.15  Aligned_cols=36  Identities=22%  Similarity=0.270  Sum_probs=33.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+|+|||||..|+-.|..|++.|.+|+++|+.+++.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il  202 (450)
T TIGR01421       167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL  202 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            379999999999999999999999999999988765

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.65  E-value=0.013  Score=55.41  Aligned_cols=37  Identities=16%  Similarity=0.113  Sum_probs=33.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+++|||||..|+-+|..|++.|.+|+++|+.+++..
T Consensus       175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~  211 (471)
T PRK06467        175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP  211 (471)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC
Confidence            3799999999999999999999999999999887654

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=95.62  E-value=0.015  Score=54.39  Aligned_cols=36  Identities=19%  Similarity=0.309  Sum_probs=33.4

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      .++|||||..|+=.|..+++.|.+|+|+|+.+++-.
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp  210 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP  210 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence            599999999999999999999999999999877655

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=95.62  E-value=0.015  Score=54.99  Aligned_cols=37  Identities=19%  Similarity=0.296  Sum_probs=33.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+++|||||..|+-+|..|++.|.+|+++|+.+++..
T Consensus       171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll~  207 (458)
T PRK06912        171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLLP  207 (458)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCc
Confidence            3799999999999999999999999999999876543

>PRK07846 mycothione reductase; Reviewed

Probab=95.60  E-value=0.015  Score=54.79  Aligned_cols=36  Identities=17%  Similarity=0.332  Sum_probs=33.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+++|||||..|+-+|..|++.|.+|+++|+.+++.
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll  202 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL  202 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence            479999999999999999999999999999987664

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.58  E-value=0.015  Score=54.95  Aligned_cols=37  Identities=19%  Similarity=0.206  Sum_probs=33.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~  211 (466)
T PRK06115        175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP  211 (466)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence            3699999999999999999999999999999877643

>PRK06370 mercuric reductase; Validated

Probab=95.57  E-value=0.016  Score=54.73  Aligned_cols=38  Identities=13%  Similarity=0.192  Sum_probs=34.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~  209 (463)
T PRK06370        172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR  209 (463)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence            37999999999999999999999999999998876543

>KOG2755 consensus Oxidoreductase [General function prediction only]

Probab=95.55  E-value=0.0082  Score=50.66  Aligned_cols=50  Identities=16%  Similarity=0.261  Sum_probs=35.5

Q ss_pred             EEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCCCcCcccchHHHHHhcc
Q 019351            7 VIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSSLNLIQLWKRFR   56 (342)
Q Consensus         7 ViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~   56 (342)
                      .+|||||++|.+||-+|+..  ..+|+++-+.+.+-.-.....+......|.
T Consensus         2 fivvgggiagvscaeqla~~~psa~illitass~vksvtn~~~i~~ylekfd   53 (334)
T KOG2755|consen    2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNYQKIGQYLEKFD   53 (334)
T ss_pred             eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhHHHHHHHHHhcC
Confidence            68999999999999999964  579999988766544443333333333443

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=95.55  E-value=0.015  Score=49.18  Aligned_cols=32  Identities=28%  Similarity=0.525  Sum_probs=30.3

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +++|||+|-.|.+.|..|++.|++|+++|+.+
T Consensus         2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~   33 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE   33 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence            69999999999999999999999999999963

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.48  E-value=0.018  Score=51.34  Aligned_cols=37  Identities=22%  Similarity=0.431  Sum_probs=33.1

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |.....|.|||+|..|...|..|+++|++|+++|.+.
T Consensus         1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~   37 (311)
T PRK06130          1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME   37 (311)
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            6655679999999999999999999999999999754

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=95.48  E-value=0.016  Score=54.39  Aligned_cols=37  Identities=22%  Similarity=0.229  Sum_probs=33.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+++..
T Consensus       149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~  185 (438)
T PRK13512        149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK  185 (438)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence            3799999999999999999999999999999877653

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.47  E-value=0.018  Score=50.67  Aligned_cols=33  Identities=24%  Similarity=0.306  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|+|||+|..|...|..|+++|++|+++|.++
T Consensus         4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD   36 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            479999999999999999999999999999864

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=95.44  E-value=0.018  Score=54.57  Aligned_cols=36  Identities=17%  Similarity=0.153  Sum_probs=32.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      +|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l~  209 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRALP  209 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence            799999999999999999999999999999876543

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=95.44  E-value=0.018  Score=53.88  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=32.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+|+|||||.+|+-+|..|++.|.+|+++++.+.+
T Consensus       138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~  172 (427)
T TIGR03385       138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI  172 (427)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence            37999999999999999999999999999998776

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.43  E-value=0.02  Score=50.94  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|+|||+|..|...|..++.+|++|+++|..+
T Consensus         8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~   40 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP   40 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=95.43  E-value=0.021  Score=51.28  Aligned_cols=36  Identities=31%  Similarity=0.342  Sum_probs=32.7

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      |.....|.|||+|.-|...|..|+++|++|+++++.
T Consensus         1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~   36 (328)
T PRK14618          1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARR   36 (328)
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCC
Confidence            555568999999999999999999999999999885

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=95.43  E-value=0.017  Score=53.58  Aligned_cols=36  Identities=19%  Similarity=0.218  Sum_probs=32.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |.. ..|.|||.|..|+..|..|+++|++|+++|.++
T Consensus         1 m~~-~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~   36 (415)
T PRK11064          1 MSF-ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ   36 (415)
T ss_pred             CCc-cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence            553 579999999999999999999999999999854

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=95.42  E-value=0.019  Score=54.17  Aligned_cols=37  Identities=30%  Similarity=0.291  Sum_probs=34.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus       170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  206 (460)
T PRK06292        170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP  206 (460)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence            3799999999999999999999999999999887654

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.39  E-value=0.016  Score=51.13  Aligned_cols=32  Identities=19%  Similarity=0.402  Sum_probs=30.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|+|||+|..|...|..|+++|++|+++|.++
T Consensus         3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   34 (288)
T PRK09260          3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ   34 (288)
T ss_pred             EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence            59999999999999999999999999999864

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=95.37  E-value=0.02  Score=50.59  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=33.0

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |...-.|.|||+|..|...|..|+.+|++|+++|.++
T Consensus         1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545          1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            5554579999999999999999999999999999864

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=95.30  E-value=0.021  Score=51.58  Aligned_cols=31  Identities=35%  Similarity=0.597  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|+|||+|..|...|..|+++|++|+++++.
T Consensus         4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~   34 (341)
T PRK08229          4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA   34 (341)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence            6999999999999999999999999999985

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=95.20  E-value=0.024  Score=53.81  Aligned_cols=37  Identities=16%  Similarity=0.187  Sum_probs=33.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+++.+..
T Consensus       184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~  220 (475)
T PRK06327        184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA  220 (475)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC
Confidence            3799999999999999999999999999999887643

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=95.17  E-value=0.027  Score=45.27  Aligned_cols=32  Identities=22%  Similarity=0.162  Sum_probs=28.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|+|+|+|.+|..||..|...|.+|+++|.+
T Consensus        21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~   52 (168)
T PF01262_consen   21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDER   52 (168)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred             eEEEEECCCHHHHHHHHHHhHCCCEEEeccCC
Confidence            57999999999999999999999999999984

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR03452 mycothione_red mycothione reductase

Probab=95.16  E-value=0.024  Score=53.36  Aligned_cols=37  Identities=16%  Similarity=0.263  Sum_probs=33.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -.++|||||..|+-.|..|++.|.+|+++|+.+++..
T Consensus       170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll~  206 (452)
T TIGR03452       170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLLR  206 (452)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCcccc
Confidence            3799999999999999999999999999999877643

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>PRK04148 hypothetical protein; Provisional

Probab=95.12  E-value=0.021  Score=43.61  Aligned_cols=33  Identities=24%  Similarity=0.358  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ..+++||.| .|...|..|++.|++|+.+|-++.
T Consensus        18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~   50 (134)
T PRK04148         18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK   50 (134)
T ss_pred             CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence            469999999 999999999999999999998765

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=95.09  E-value=0.026  Score=50.10  Aligned_cols=31  Identities=23%  Similarity=0.400  Sum_probs=29.3

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|+|||+|..|...|..|+++|++|++++++
T Consensus         2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~   32 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR   32 (304)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            5999999999999999999999999999984

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.07  E-value=0.028  Score=49.99  Aligned_cols=32  Identities=25%  Similarity=0.288  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .+|+|||+|-.|...|++|+++|.+|+++.+.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~   34 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD   34 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence            47999999999999999999999999999985

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=94.99  E-value=0.027  Score=56.82  Aligned_cols=36  Identities=19%  Similarity=0.070  Sum_probs=33.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+|+|||||..|+-+|..|++.|.+|+|+|+.+.+-
T Consensus       141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll  176 (785)
T TIGR02374       141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM  176 (785)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence            369999999999999999999999999999988764

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.99  E-value=0.028  Score=52.91  Aligned_cols=33  Identities=30%  Similarity=0.483  Sum_probs=31.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|+|+|+|..|+.+|..|+++|++|+++|+..
T Consensus         6 k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~   38 (450)
T PRK14106          6 KKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE   38 (450)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            579999999999999999999999999999974

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=94.97  E-value=0.028  Score=50.55  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=30.0

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|.|||+|..||++|.-|++.|++|+.+|...
T Consensus         2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~   33 (414)
T COG1004           2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE   33 (414)
T ss_pred             ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence            69999999999999999999999999999853

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=94.94  E-value=0.029  Score=49.83  Aligned_cols=30  Identities=27%  Similarity=0.365  Sum_probs=28.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~   35 (342)
                      +|+|||+|..|...|..|+++|++|+++.+
T Consensus         2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r   31 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR   31 (305)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence            599999999999999999999999999987

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=94.91  E-value=0.029  Score=53.78  Aligned_cols=35  Identities=23%  Similarity=0.046  Sum_probs=32.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+|+|||||..|+-+|..|+..|.+|+++|+.+.+
T Consensus       353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l  387 (515)
T TIGR03140       353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL  387 (515)
T ss_pred             CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence            37999999999999999999999999999987655

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06116 glutathione reductase; Validated

Probab=94.89  E-value=0.098  Score=49.28  Aligned_cols=58  Identities=17%  Similarity=0.177  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|+++++++.|++|+.++++.+.....+|.++.||.||+|+|..|+
T Consensus       209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~  266 (450)
T PRK06116        209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREPN  266 (450)
T ss_pred             HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence            5666777888889999999999999987523333333337788999999999988764

>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E

Probab=94.88  E-value=0.087  Score=51.10  Aligned_cols=54  Identities=15%  Similarity=0.224  Sum_probs=45.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~  286 (342)
                      ..+...|.+.+++.|++|+.++.|++|..+ +|++.++..    +|.  .+.|+.||+|+|
T Consensus       119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~-~g~v~Ga~~~~~~~g~~~~i~AkaVILATG  178 (565)
T TIGR01816       119 HAILHTLYQQNLKADTSFFNEYFALDLLME-DGECRGVIAYCLETGEIHRFRAKAVVLATG  178 (565)
T ss_pred             HHHHHHHHHHHHhCCCEEEeccEEEEEEee-CCEEEEEEEEEcCCCcEEEEEeCeEEECCC
Confidence            468889999898899999999999999876 788888764    343  578999999876

coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.87  E-value=0.035  Score=49.39  Aligned_cols=32  Identities=22%  Similarity=0.373  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~   37 (342)
                      +|.|||+|..|.++|+.|+.+|  .+|.++|.+.
T Consensus         2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~   35 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK   35 (308)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence            6999999999999999999999  5899999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=94.85  E-value=0.033  Score=54.71  Aligned_cols=36  Identities=11%  Similarity=0.134  Sum_probs=33.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      +|+|||||..|+-.|..|++.|.+|+++|+.+++..
T Consensus       314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~  349 (659)
T PTZ00153        314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP  349 (659)
T ss_pred             ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence            699999999999999999999999999999988664

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=94.85  E-value=0.032  Score=48.98  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|+|||+|..|...|..|+++|++|+++|.++
T Consensus         4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~   36 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD   36 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence            369999999999999999999999999999754

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=94.84  E-value=0.029  Score=49.47  Aligned_cols=33  Identities=18%  Similarity=0.273  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|+++|++|+++|.++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~   36 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE   36 (291)
T ss_pred             cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            369999999999999999999999999999864

>PTZ00058 glutathione reductase; Provisional

Probab=94.76  E-value=0.033  Score=53.73  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=33.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+|+|||||..|+-.|..|++.|.+|+++|+++++.
T Consensus       238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il  273 (561)
T PTZ00058        238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL  273 (561)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence            369999999999999999999999999999988764

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=94.75  E-value=0.036  Score=45.75  Aligned_cols=38  Identities=26%  Similarity=0.394  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      |.....|.|||+|..|...|.-.+.+|+.|.++|++..
T Consensus         8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~   45 (298)
T KOG2304|consen    8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED   45 (298)
T ss_pred             cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence            34456899999999999999999999999999999643

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=94.74  E-value=0.037  Score=52.04  Aligned_cols=37  Identities=14%  Similarity=0.112  Sum_probs=33.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||||.+|+-+|..|++.|.+|+++++.+++-+
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  186 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRILP  186 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccCc
Confidence            4799999999999999999999999999999876543

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=94.66  E-value=0.036  Score=51.51  Aligned_cols=33  Identities=27%  Similarity=0.335  Sum_probs=30.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      +|.|||.|..|+..|..|+++|++|+++|++..
T Consensus         2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~   34 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE   34 (411)
T ss_pred             EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence            599999999999999999999999999998653

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=94.64  E-value=0.041  Score=52.40  Aligned_cols=37  Identities=16%  Similarity=0.206  Sum_probs=32.3

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |.....|.|||+|..|...|..|+++|++|+|+|+++
T Consensus         1 ~~~i~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~   37 (495)
T PRK07531          1 MTMIMKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP   37 (495)
T ss_pred             CCCcCEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            4434479999999999999999999999999999853

>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=94.58  E-value=0.12  Score=50.30  Aligned_cols=55  Identities=24%  Similarity=0.278  Sum_probs=45.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~  286 (342)
                      ..+...|.+.+++.|++|+.++.++++..++++++.++..    +|.  .+.|+.||+|+|
T Consensus       126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATG  186 (570)
T PRK05675        126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATG  186 (570)
T ss_pred             HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCC
Confidence            4688899998888899999999999998753678888864    343  478999999876

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=94.51  E-value=0.15  Score=46.88  Aligned_cols=34  Identities=9%  Similarity=0.261  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC--CeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~~   38 (342)
                      .||+|||||++|+.+|..|.+.+  .+|+|+++.+.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            38999999999999999998765  68999988763

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=94.45  E-value=0.054  Score=48.06  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=29.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      .+|.|||+|..|+.+|+.|+..|+ +|+++|..
T Consensus         2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~   34 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVV   34 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            369999999999999999999886 89999984

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=94.42  E-value=0.046  Score=51.47  Aligned_cols=34  Identities=21%  Similarity=0.138  Sum_probs=31.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -.|+|||||..|+-+|..|.+.|.+|+++++++.
T Consensus       273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~  306 (449)
T TIGR01316       273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR  306 (449)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            3799999999999999999999999999998754

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PRK10262 thioredoxin reductase; Provisional

Probab=94.42  E-value=0.047  Score=48.88  Aligned_cols=35  Identities=26%  Similarity=0.203  Sum_probs=32.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~  181 (321)
T PRK10262        147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF  181 (321)
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence            37999999999999999999999999999998654

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=94.34  E-value=0.046  Score=52.45  Aligned_cols=34  Identities=18%  Similarity=-0.022  Sum_probs=31.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      +|+|||||.+|+-+|..|+..|.+|+++++.+.+
T Consensus       353 ~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l  386 (517)
T PRK15317        353 RVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL  386 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence            7999999999999999999999999999987654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=94.32  E-value=0.047  Score=52.86  Aligned_cols=35  Identities=26%  Similarity=0.314  Sum_probs=32.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++++.+..
T Consensus       144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~  178 (555)
T TIGR03143       144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF  178 (555)
T ss_pred             CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence            36999999999999999999999999999998764

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=94.27  E-value=0.064  Score=44.59  Aligned_cols=33  Identities=21%  Similarity=0.181  Sum_probs=30.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|||||-.|...|..|.+.|.+|+|+....
T Consensus        10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~   42 (205)
T TIGR01470        10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL   42 (205)
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            479999999999999999999999999998753

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=94.25  E-value=0.17  Score=44.56  Aligned_cols=54  Identities=17%  Similarity=0.296  Sum_probs=42.5

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      .+...+.+.+++.|+++++ +.|.+|+.+ ++. +.+++ ++.++.+|+||+|+|..+
T Consensus        58 ~~~~~l~~~~~~~gv~~~~-~~v~~v~~~-~~~-~~v~~~~~~~~~~d~liiAtG~~~  112 (300)
T TIGR01292        58 ELMEKMKEQAVKFGAEIIY-EEVIKVDLS-DRP-FKVKTGDGKEYTAKAVIIATGASA  112 (300)
T ss_pred             HHHHHHHHHHHHcCCeEEE-EEEEEEEec-CCe-eEEEeCCCCEEEeCEEEECCCCCc
Confidence            5667777888888999999 899999876 443 44554 567899999999999764

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=94.22  E-value=0.067  Score=47.65  Aligned_cols=34  Identities=29%  Similarity=0.444  Sum_probs=31.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..+|.|||+|.-|...|..|+++|++|.+++++.
T Consensus         4 ~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619          4 PKTIAILGAGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4579999999999999999999999999999864

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=94.16  E-value=0.072  Score=42.70  Aligned_cols=32  Identities=22%  Similarity=0.153  Sum_probs=29.1

Q ss_pred             ccEEEECCCc-hHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~Gi-aGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .+|+|||+|- .|..+|..|.+.|.+|+++.+.
T Consensus        45 k~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~   77 (168)
T cd01080          45 KKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK   77 (168)
T ss_pred             CEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence            5799999995 6999999999999999999875

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PLN02546 glutathione reductase

Probab=94.14  E-value=0.058  Score=52.10  Aligned_cols=37  Identities=14%  Similarity=0.100  Sum_probs=33.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||||..|+-.|..|+..|.+|+++|+.+.+..
T Consensus       253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~  289 (558)
T PLN02546        253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR  289 (558)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence            3799999999999999999999999999999877543

>PRK12831 putative oxidoreductase; Provisional

Probab=94.11  E-value=0.058  Score=50.98  Aligned_cols=34  Identities=21%  Similarity=0.049  Sum_probs=31.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -+|+|||||..|+-+|..|.+.|.+|+++++++.
T Consensus       282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~  315 (464)
T PRK12831        282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE  315 (464)
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence            3799999999999999999999999999998653

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=94.07  E-value=0.073  Score=42.53  Aligned_cols=32  Identities=22%  Similarity=0.301  Sum_probs=28.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .+|.|||.|..|...|..|.++|++|.++++.
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~   33 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRS   33 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHHHHTTTEEEEEESS
T ss_pred             CEEEEEchHHHHHHHHHHHHhcCCeEEeeccc
Confidence            36999999999999999999999999999975

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=94.05  E-value=0.052  Score=47.13  Aligned_cols=42  Identities=31%  Similarity=0.431  Sum_probs=35.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC--------CCCCCcCccc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN--------DYYGGESSSL   46 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~--------~~~GG~~~t~   46 (342)
                      -+|+|||||+.|.-+|..+.-.|.+|+++|.+        +..||+..+.
T Consensus       169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~  218 (371)
T COG0686         169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTL  218 (371)
T ss_pred             ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEE
Confidence            47999999999999999999999999999997        3456665444

>TIGR00518 alaDH alanine dehydrogenase

Probab=94.02  E-value=0.066  Score=48.91  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=30.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .+|+|||+|..|+.+|..|...|.+|+++|++
T Consensus       168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       168 GDVTIIGGGVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            57999999999999999999999999999985

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]

Probab=93.99  E-value=0.16  Score=46.78  Aligned_cols=59  Identities=22%  Similarity=0.281  Sum_probs=50.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+.+.+..+.+.+|+++++++.+.+++.+++|++.-|.. ++.++.||.||+.+|..|.
T Consensus       255 ~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~  314 (478)
T KOG1336|consen  255 PSIGQFYEDYYENKGVKFYLGTVVSSLEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN  314 (478)
T ss_pred             HHHHHHHHHHHHhcCeEEEEecceeecccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence            4566777888899999999999999998776788887777 8899999999999887653

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=93.98  E-value=0.086  Score=43.66  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ...|+|||+|-.|..+|..|++.|. +++++|..
T Consensus        21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D   54 (200)
T TIGR02354        21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD   54 (200)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            3579999999999999999999997 79999985

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=93.95  E-value=0.068  Score=49.57  Aligned_cols=35  Identities=26%  Similarity=0.191  Sum_probs=32.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      ..|+|+|-|.+|+++|..|.+.|.+|++.|.++..
T Consensus         8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~   42 (448)
T COG0771           8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP   42 (448)
T ss_pred             CEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence            57999999999999999999999999999987766

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=93.90  E-value=0.064  Score=48.74  Aligned_cols=33  Identities=24%  Similarity=0.239  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCe-EEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~-V~vlE~~~~   38 (342)
                      .|+|||+|..|+-+|..|.+.|.+ |+|+++.+.
T Consensus       174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~  207 (352)
T PRK12770        174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI  207 (352)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence            699999999999999999999986 999998654

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=93.89  E-value=0.076  Score=47.58  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=30.0

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|.|||+|..|...|..|+++|++|.++++++
T Consensus         3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~   34 (325)
T PRK00094          3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP   34 (325)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            69999999999999999999999999999853

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=93.84  E-value=0.098  Score=46.78  Aligned_cols=36  Identities=17%  Similarity=0.308  Sum_probs=31.8

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~   38 (342)
                      ...+|+|||+|..|...|+.|+..|+ +|.++|.++.
T Consensus         5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~   41 (321)
T PTZ00082          5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKN   41 (321)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            34689999999999999999999995 8999998654

>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]

Probab=93.73  E-value=0.064  Score=46.81  Aligned_cols=35  Identities=17%  Similarity=0.258  Sum_probs=30.4

Q ss_pred             CcccEEEECCCchHHHHHHhhhhC-C-CeEEEEcCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVD-G-LKVLHMDRND   37 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~-G-~~V~vlE~~~   37 (342)
                      .++.|+|||||-+|++.|..+.++ | -+|-|+|..+
T Consensus        38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e   74 (446)
T KOG3851|consen   38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAE   74 (446)
T ss_pred             cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchh
Confidence            468999999999999999999875 5 5899999865

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=93.71  E-value=0.076  Score=50.03  Aligned_cols=32  Identities=13%  Similarity=0.261  Sum_probs=28.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~   37 (342)
                      +|+|||.|..|+.+|..|+++|  ++|+.+|.+.
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~   36 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV   36 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence            5999999999999999999985  7899998754

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=93.70  E-value=0.076  Score=46.53  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|.|||.|..|.+.|..|+++|++|++++++.
T Consensus         2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~   33 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE   33 (279)
T ss_pred             eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999999853

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.67  E-value=0.081  Score=49.95  Aligned_cols=32  Identities=31%  Similarity=0.424  Sum_probs=30.4

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|.|+|.|.+|+++|..|.+.|++|++.|.++
T Consensus        16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~   47 (458)
T PRK01710         16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS   47 (458)
T ss_pred             eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence            69999999999999999999999999999865

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=93.66  E-value=0.084  Score=47.42  Aligned_cols=31  Identities=26%  Similarity=0.292  Sum_probs=29.4

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|.|||+|--|...|..|+++|++|.++.++
T Consensus         2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~   32 (326)
T PRK14620          2 KISILGAGSFGTAIAIALSSKKISVNLWGRN   32 (326)
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence            5999999999999999999999999999885

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=93.66  E-value=0.1  Score=41.32  Aligned_cols=31  Identities=19%  Similarity=0.131  Sum_probs=28.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~   35 (342)
                      -.|+|||||-.|..-|..|.+.|.+|+|+..
T Consensus        14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp   44 (157)
T PRK06719         14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVSP   44 (157)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcC
Confidence            5799999999999999999999999999943

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=93.66  E-value=0.24  Score=46.59  Aligned_cols=41  Identities=27%  Similarity=0.411  Sum_probs=37.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      +|||+|||||++|++||.+|+++|++|+|+|+ +.+||.|..
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~lie~-~~~GG~c~~   42 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAANHGAKVAIAEE-PRVGGTCVI   42 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHhCCCcEEEEec-CccCceeec
Confidence            58999999999999999999999999999999 478998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PLN02507 glutathione reductase

Probab=93.62  E-value=0.25  Score=47.16  Aligned_cols=42  Identities=21%  Similarity=0.237  Sum_probs=38.0

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcC---------CCCCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR---------NDYYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~---------~~~~GG~~~t   45 (342)
                      +|||+|||||.+|+.||.+|++.|++|+|+|+         .+.+||.|..
T Consensus        25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n   75 (499)
T PLN02507         25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI   75 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence            58999999999999999999999999999996         3568998854

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=93.58  E-value=0.1  Score=43.24  Aligned_cols=32  Identities=16%  Similarity=0.161  Sum_probs=29.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|+|||||-.|...|..|.+.|.+|+|+++.
T Consensus        11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~   42 (202)
T PRK06718         11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPE   42 (202)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence            57999999999999999999999999999763

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=93.48  E-value=0.079  Score=50.19  Aligned_cols=33  Identities=24%  Similarity=0.292  Sum_probs=30.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -+|+|+|+|..|+.|+..+...|.+|.++|.++
T Consensus       166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~  198 (509)
T PRK09424        166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP  198 (509)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999998864

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=93.48  E-value=0.074  Score=38.86  Aligned_cols=33  Identities=27%  Similarity=0.252  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|+|||||-.|..-+..|.+.|.+|+|+....
T Consensus         8 ~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~   40 (103)
T PF13241_consen    8 KRVLVVGGGPVAARKARLLLEAGAKVTVISPEI   40 (103)
T ss_dssp             -EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence            579999999999999999999999999998763

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.43  E-value=0.09  Score=49.75  Aligned_cols=33  Identities=12%  Similarity=-0.138  Sum_probs=30.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      .|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus        10 ~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~   42 (468)
T PRK04690         10 RVALWGWGREGRAAYRALRAHLPAQALTLFCNA   42 (468)
T ss_pred             EEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence            699999999999999999999999999997643

>PRK14694 putative mercuric reductase; Provisional

Probab=93.37  E-value=0.32  Score=46.10  Aligned_cols=42  Identities=19%  Similarity=0.319  Sum_probs=38.2

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      .+|||+|||||.+|++||.+|++.|++|+|+|++ .+||.|..
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~n   46 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCVN   46 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-ccccceec
Confidence            3699999999999999999999999999999996 68987753

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=93.36  E-value=0.27  Score=46.14  Aligned_cols=44  Identities=25%  Similarity=0.531  Sum_probs=39.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC-CCCcCcc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY-YGGESSS   45 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~-~GG~~~t   45 (342)
                      |. +|||+|||||.+|++||.+|+++|++|+|+|+.+. +||.+..
T Consensus         1 ~~-~yDvvVIGgGpaGl~aA~~la~~g~~V~lie~~~~~~GG~~~~   45 (441)
T PRK08010          1 MN-KYQAVIIGFGKAGKTLAVTLAKAGWRVALIEQSNAMYGGTCIN   45 (441)
T ss_pred             CC-cCCEEEECCCHhHHHHHHHHHHCCCeEEEEcCCCCccceeEee
Confidence            64 59999999999999999999999999999999874 7998753

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=93.27  E-value=0.087  Score=50.14  Aligned_cols=33  Identities=24%  Similarity=0.317  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|+++|++|+++|+++
T Consensus         6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~   38 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA   38 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            469999999999999999999999999999864

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=93.27  E-value=0.14  Score=39.83  Aligned_cols=32  Identities=28%  Similarity=0.460  Sum_probs=29.1

Q ss_pred             cEEEECC-CchHHHHHHhhhhCC--CeEEEEcCCC
Q 019351            6 DVIVLGT-GLKECILSGLLSVDG--LKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~-GiaGl~aA~~L~~~G--~~V~vlE~~~   37 (342)
                      +|+|||+ |..|.++|+.|...+  .++.++|.+.
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~   36 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE   36 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence            7999999 999999999999988  4799999973

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=93.22  E-value=0.11  Score=49.66  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=31.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -.|.|||+|..|...|..|+++|++|+++|.+..
T Consensus         8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e   41 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG   41 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence            4699999999999999999999999999998653

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=93.21  E-value=0.12  Score=47.07  Aligned_cols=43  Identities=26%  Similarity=0.497  Sum_probs=35.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCC-CeEEEEcCC--------CCCCCcCcccch
Q 019351            6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRN--------DYYGGESSSLNL   48 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~--------~~~GG~~~t~~~   48 (342)
                      +|+|||+|-.|.++|+.|+++| .+|++-+|.        ...+++..+...
T Consensus         3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~v   54 (389)
T COG1748           3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQV   54 (389)
T ss_pred             cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEe
Confidence            6999999999999999999999 999999996        344555555443

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=93.19  E-value=0.14  Score=38.12  Aligned_cols=31  Identities=26%  Similarity=0.474  Sum_probs=27.8

Q ss_pred             EEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         7 ViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |+|+|.|-.|...|..|.+.+.+|+++|.++
T Consensus         1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~   31 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP   31 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred             eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence            7999999999999999999778999999963

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.14  E-value=0.12  Score=48.69  Aligned_cols=37  Identities=24%  Similarity=0.329  Sum_probs=32.8

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |.++--|+|||.|-+|+++|..|.++|++|++.|...
T Consensus         3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   39 (448)
T PRK03803          3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE   39 (448)
T ss_pred             cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence            5555569999999999999999999999999999765

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=93.13  E-value=0.12  Score=45.91  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.4

Q ss_pred             cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~   37 (342)
                      +|+|||+|..|.++|+.|+..|  .+|.++|++.
T Consensus         2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~   35 (306)
T cd05291           2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINE   35 (306)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            5999999999999999999999  5899999864

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=93.12  E-value=0.35  Score=46.01  Aligned_cols=44  Identities=18%  Similarity=0.258  Sum_probs=39.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhhC-CCeEEEEcCC--------CCCCCcCccc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRN--------DYYGGESSSL   46 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~~--------~~~GG~~~t~   46 (342)
                      .+|||+|||||.+|..||.++++. |.+|+++|+.        +.+||.|-..
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln~   54 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVNV   54 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecCc
Confidence            469999999999999999999997 8999999984        5799987543

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=93.09  E-value=0.11  Score=47.80  Aligned_cols=31  Identities=19%  Similarity=0.204  Sum_probs=27.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|.|||.|..|+.+|..|+. |++|+++|.+.
T Consensus         2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~   32 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP   32 (388)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence            59999999999999988885 99999999854

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.09  E-value=0.11  Score=49.56  Aligned_cols=32  Identities=22%  Similarity=0.253  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -.|+|+|.|.+|++++..|...|.+|++.|.+
T Consensus        13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~   44 (488)
T PRK03369         13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD   44 (488)
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            36999999999999999999999999999965

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=93.07  E-value=0.12  Score=48.19  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=31.4

Q ss_pred             cEEEECCCchHHHHHHhhhh--------------CCCeEEEEcCCCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSV--------------DGLKVLHMDRNDYYGG   41 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~--------------~G~~V~vlE~~~~~GG   41 (342)
                      .|+|||||.+|+-.|..|++              .|.+|+++|+.+.+-.
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~  224 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG  224 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc
Confidence            79999999999999999885              4789999999876643

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=93.05  E-value=0.14  Score=39.44  Aligned_cols=32  Identities=25%  Similarity=0.383  Sum_probs=28.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCe-EEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~-V~vlE~~   36 (342)
                      -.++|||+|-+|-.+++.|+..|.+ |+|+-|.
T Consensus        13 ~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt   45 (135)
T PF01488_consen   13 KRVLVIGAGGAARAVAAALAALGAKEITIVNRT   45 (135)
T ss_dssp             SEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred             CEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence            5799999999999999999999965 9999764

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=93.02  E-value=0.11  Score=49.02  Aligned_cols=34  Identities=24%  Similarity=0.171  Sum_probs=30.8

Q ss_pred             ccEEEECCCchHHH-HHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~-aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -.|.|||.|-+|++ +|..|.++|++|++.|.+..
T Consensus         8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~   42 (461)
T PRK00421          8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES   42 (461)
T ss_pred             CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence            46999999999999 69999999999999998654

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.01  E-value=0.13  Score=48.38  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=31.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      ..|+|+|.|.+|+++|..|+++|++|++.|..+..
T Consensus         6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~   40 (445)
T PRK04308          6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP   40 (445)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            46999999999999999999999999999986653

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.00  E-value=0.11  Score=48.83  Aligned_cols=33  Identities=27%  Similarity=0.229  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|+|+|-+|+++|..|+++|.+|++.|++.
T Consensus         6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~   38 (447)
T PRK02472          6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP   38 (447)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            358999999999999999999999999999764

>PRK14727 putative mercuric reductase; Provisional

Probab=92.99  E-value=0.36  Score=45.85  Aligned_cols=56  Identities=16%  Similarity=0.127  Sum_probs=44.5

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|+++++++.|+++..+ ++. ..+.++++++.||.||+|+|..|+
T Consensus       229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~-~~~-~~v~~~~g~i~aD~VlvA~G~~pn  284 (479)
T PRK14727        229 LLGETLTACFEKEGIEVLNNTQASLVEHD-DNG-FVLTTGHGELRAEKLLISTGRHAN  284 (479)
T ss_pred             HHHHHHHHHHHhCCCEEEcCcEEEEEEEe-CCE-EEEEEcCCeEEeCEEEEccCCCCC
Confidence            45667777888899999999999999865 443 445555667999999999998875

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=92.93  E-value=0.15  Score=42.22  Aligned_cols=32  Identities=31%  Similarity=0.301  Sum_probs=29.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|+|+|.|-.|..+|..|.+.|.+|++.|.+
T Consensus        29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~   60 (200)
T cd01075          29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN   60 (200)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            46999999999999999999999999999875

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=92.93  E-value=0.12  Score=45.78  Aligned_cols=32  Identities=25%  Similarity=0.444  Sum_probs=28.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|.|+|+|..|...|++|+++|.+|+++=+.+
T Consensus         2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~   33 (307)
T COG1893           2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSR   33 (307)
T ss_pred             eEEEECCcHHHHHHHHHHHhCCCeEEEEecHH
Confidence            69999999999999999999998888886654

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=92.87  E-value=0.14  Score=43.09  Aligned_cols=31  Identities=32%  Similarity=0.338  Sum_probs=28.4

Q ss_pred             cEEEEC-CCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG-~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|.||| +|..|.+.|..|+++|++|+++.++
T Consensus         2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~   33 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRD   33 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence            599997 7999999999999999999999775

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK06223 malate dehydrogenase; Reviewed

Probab=92.85  E-value=0.15  Score=45.33  Aligned_cols=33  Identities=24%  Similarity=0.408  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      .+|+|||+|..|...|+.|+..|. +|.++|.+.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~   36 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVE   36 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCC
Confidence            479999999999999999999875 999999854

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.84  E-value=0.087  Score=46.57  Aligned_cols=32  Identities=19%  Similarity=-0.016  Sum_probs=27.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -||+|||||.+|+-||..|+--=..|+++|=.
T Consensus       355 K~VAVIGGGNSGvEAAIDLAGiv~hVtllEF~  386 (520)
T COG3634         355 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFA  386 (520)
T ss_pred             ceEEEECCCcchHHHHHhHHhhhheeeeeecc
Confidence            58999999999999999998444689999864

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=92.83  E-value=0.13  Score=39.59  Aligned_cols=32  Identities=22%  Similarity=0.384  Sum_probs=27.8

Q ss_pred             EEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            7 VIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         7 ViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ++|+|+|..+...|..++..|++|+|+|-++.
T Consensus         1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e   32 (136)
T PF13478_consen    1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE   32 (136)
T ss_dssp             EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred             CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence            58999999999999999999999999999743

>PRK15116 sulfur acceptor protein CsdL; Provisional

Probab=92.83  E-value=0.15  Score=44.14  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=30.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~   37 (342)
                      ...|+|||+|-.|..+|..|++.| .+++++|...
T Consensus        30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~   64 (268)
T PRK15116         30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD   64 (268)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence            357999999999999999999999 7999999853

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=92.77  E-value=0.13  Score=48.54  Aligned_cols=34  Identities=21%  Similarity=0.128  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~   38 (342)
                      -+|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus       274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~  308 (457)
T PRK11749        274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR  308 (457)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            379999999999999999999997 8999998643

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=92.77  E-value=0.14  Score=47.28  Aligned_cols=33  Identities=18%  Similarity=0.100  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|+|+|..|+.+|..|...|.+|+|+|..+
T Consensus       203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~  235 (413)
T cd00401         203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP  235 (413)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            369999999999999999999999999998864

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=92.72  E-value=0.19  Score=44.87  Aligned_cols=34  Identities=21%  Similarity=0.355  Sum_probs=30.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      ..+|+|||+|-.|.++|+.|+..|.  ++.++|.+.
T Consensus         6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~   41 (315)
T PRK00066          6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK   41 (315)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence            4789999999999999999999996  799999853

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=92.72  E-value=0.12  Score=45.63  Aligned_cols=32  Identities=19%  Similarity=0.164  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|.|||.|..|...|..|+++|++|++++++.
T Consensus         1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~   32 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP   32 (291)
T ss_pred             CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            48999999999999999999999999999864

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=92.71  E-value=0.13  Score=39.52  Aligned_cols=32  Identities=22%  Similarity=0.377  Sum_probs=29.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ..|+|+|+|-.|...|..|++.|. +++++|..
T Consensus         3 ~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d   35 (135)
T PF00899_consen    3 KRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD   35 (135)
T ss_dssp             -EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred             CEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence            579999999999999999999995 89999984

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.61  E-value=0.14  Score=47.73  Aligned_cols=36  Identities=28%  Similarity=0.445  Sum_probs=31.8

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |.. -.|.|||-|.+|+++|..|.++|++|.+.|.+.
T Consensus         1 ~~~-~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~   36 (418)
T PRK00683          1 MGL-QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL   36 (418)
T ss_pred             CCC-CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            444 369999999999999999999999999999764

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=92.51  E-value=0.15  Score=44.95  Aligned_cols=32  Identities=22%  Similarity=0.414  Sum_probs=30.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|.|||||.-|-..|+.++..|++|+++|.+
T Consensus         4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~   35 (307)
T COG1250           4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS   35 (307)
T ss_pred             cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence            47999999999999999999988999999997

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=92.50  E-value=0.14  Score=45.34  Aligned_cols=31  Identities=26%  Similarity=0.469  Sum_probs=28.4

Q ss_pred             EEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            7 VIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         7 ViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      |.|||+|..|..+|+.|+..|. +|+++|.+.
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e   32 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE   32 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence            5899999999999999999886 999999974

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=92.50  E-value=0.12  Score=51.46  Aligned_cols=33  Identities=24%  Similarity=0.289  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|+|||+|..|...|+.++.+|++|+++|.++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ  346 (715)
T ss_pred             ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence            369999999999999999999999999999864

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=92.49  E-value=0.16  Score=47.79  Aligned_cols=31  Identities=19%  Similarity=0.132  Sum_probs=28.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -.|+|+|.|.+|.++|..|.+ |.+|+|.|.+
T Consensus         7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~   37 (454)
T PRK01368          7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL   37 (454)
T ss_pred             CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence            469999999999999999994 9999999964

>PRK13748 putative mercuric reductase; Provisional

Probab=92.47  E-value=0.45  Score=46.24  Aligned_cols=42  Identities=21%  Similarity=0.292  Sum_probs=38.6

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      .+|||+|||||.+|++||.+|++.|++|+|+|++ .+||.|..
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~~G~~v~lie~~-~~GG~c~n  138 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVEQGARVTLIERG-TIGGTCVN  138 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhCCCeEEEEecC-cceeeccc
Confidence            3699999999999999999999999999999997 88998753

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=92.37  E-value=0.23  Score=34.79  Aligned_cols=31  Identities=39%  Similarity=0.476  Sum_probs=28.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhC-CCeEEEEcC
Q 019351            5 YDVIVLGTGLKECILSGLLSVD-GLKVLHMDR   35 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~   35 (342)
                      -+++|+|+|..|..+|..|.+. +.+|.++++
T Consensus        24 ~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r   55 (86)
T cd05191          24 KTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR   55 (86)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence            4799999999999999999998 589999988

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=92.33  E-value=0.22  Score=44.36  Aligned_cols=34  Identities=21%  Similarity=0.271  Sum_probs=30.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      +.+|+|||+|..|.++|+.|+..|.  ++.++|.+.
T Consensus         3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~   38 (312)
T cd05293           3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE   38 (312)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            4689999999999999999999884  799999864

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=92.30  E-value=0.18  Score=44.63  Aligned_cols=32  Identities=28%  Similarity=0.322  Sum_probs=30.0

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|.|||.|..|...|..|++.|++|++++++.
T Consensus         4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~   35 (296)
T PRK11559          4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP   35 (296)
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            79999999999999999999999999998864

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=92.25  E-value=0.2  Score=45.89  Aligned_cols=33  Identities=21%  Similarity=0.525  Sum_probs=30.5

Q ss_pred             ccEEEEC-CCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG-~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|+||| .|..|-+.|..|+++|++|.++++++
T Consensus        99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~  132 (374)
T PRK11199         99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD  132 (374)
T ss_pred             ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence            5799999 89999999999999999999999864

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=92.22  E-value=0.16  Score=50.58  Aligned_cols=33  Identities=21%  Similarity=0.245  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|+|||+|..|...|+.++.+|++|+++|.+.
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~  346 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ  346 (714)
T ss_pred             ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence            359999999999999999999999999999864

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=92.17  E-value=0.49  Score=44.19  Aligned_cols=55  Identities=20%  Similarity=0.157  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|+++++++.|++|..+  +++ .+..+|+++.+|.||+|+|..|+
T Consensus       180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~--~~~-v~~~~g~~i~~D~vi~a~G~~p~  234 (427)
T TIGR03385       180 EMNQIVEEELKKHEINLRLNEEVDSIEGE--ERV-KVFTSGGVYQADMVILATGIKPN  234 (427)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEecC--CCE-EEEcCCCEEEeCEEEECCCccCC
Confidence            45666777788889999999999999754  333 34457889999999999998764

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=92.14  E-value=0.59  Score=47.64  Aligned_cols=39  Identities=10%  Similarity=0.142  Sum_probs=33.2

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhC----CCeEEEEcCCCCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVD----GLKVLHMDRNDYYG   40 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~----G~~V~vlE~~~~~G   40 (342)
                      |+. .+|+|||+|++|+.+|..|.+.    +++|+|+++.++++
T Consensus         1 m~~-~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~   43 (847)
T PRK14989          1 MSK-VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA   43 (847)
T ss_pred             CCC-CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence            554 4899999999999999999754    47999999998865

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=92.13  E-value=0.16  Score=51.53  Aligned_cols=38  Identities=18%  Similarity=0.070  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCCchHHHH-HHhhhhCCCeEEEEcCCCC
Q 019351            1 MDEEYDVIVLGTGLKECIL-SGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~a-A~~L~~~G~~V~vlE~~~~   38 (342)
                      |++...|.|||.|-+|+++ |..|.++|++|++.|.+..
T Consensus         1 ~~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~   39 (809)
T PRK14573          1 MMKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEG   39 (809)
T ss_pred             CCCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCC
Confidence            5554579999999999999 9999999999999998653

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=92.05  E-value=0.2  Score=44.25  Aligned_cols=33  Identities=30%  Similarity=0.325  Sum_probs=30.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|+|||.|..|..+|..|...|.+|++++++.
T Consensus       153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        153 SNVLVLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            579999999999999999999999999999873

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=91.98  E-value=0.22  Score=43.79  Aligned_cols=32  Identities=22%  Similarity=0.293  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ..|+|||+|-+|-++|+.|++.|. +|+|+++.
T Consensus       128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~  160 (284)
T PRK12549        128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVD  160 (284)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence            369999999999999999999995 89999885

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=91.97  E-value=0.17  Score=47.84  Aligned_cols=33  Identities=24%  Similarity=0.298  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|+|+|..|+.++..+...|.+|+++|.++
T Consensus       165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~  197 (511)
T TIGR00561       165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP  197 (511)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999998864

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=91.93  E-value=0.58  Score=43.03  Aligned_cols=36  Identities=22%  Similarity=0.419  Sum_probs=33.6

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |++ +||+|||||++||++|..|+++|++|+|+|+.+
T Consensus         1 ~~~-~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~   36 (384)
T PRK08849          1 MNK-YDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE   36 (384)
T ss_pred             CCc-ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence            664 899999999999999999999999999999874

>PTZ00052 thioredoxin reductase; Provisional

Probab=91.91  E-value=0.61  Score=44.56  Aligned_cols=45  Identities=24%  Similarity=0.321  Sum_probs=38.9

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC--------CCCCcCcc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--------YYGGESSS   45 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~--------~~GG~~~t   45 (342)
                      |..+|||+|||||.+|+.||.+|+++|++|+|+|+..        .+||.|-.
T Consensus         2 ~~~~yDviVIG~GpaG~~AA~~aa~~G~~V~lie~~~~~~~~~~~~~GG~C~n   54 (499)
T PTZ00052          2 LTFMYDLVVIGGGSGGMAAAKEAAAHGKKVALFDYVKPSTQGTKWGLGGTCVN   54 (499)
T ss_pred             CccccCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCCCCccccccccceecc
Confidence            5556999999999999999999999999999999732        48998743

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=91.86  E-value=0.17  Score=50.91  Aligned_cols=34  Identities=21%  Similarity=0.085  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCe-EEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~-V~vlE~~~~   38 (342)
                      -+|+|||||..|+-+|..|.+.|.+ |+++++++.
T Consensus       571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~  605 (752)
T PRK12778        571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE  605 (752)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence            3799999999999999999999986 999998653

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.85  E-value=0.19  Score=48.08  Aligned_cols=32  Identities=22%  Similarity=0.308  Sum_probs=30.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|.|+|.|.+|+++|..|.++|++|.+.|.+.
T Consensus         9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~   40 (498)
T PRK02006          9 MVLVLGLGESGLAMARWCARHGARLRVADTRE   40 (498)
T ss_pred             EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence            69999999999999999999999999999764

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=91.84  E-value=0.24  Score=44.65  Aligned_cols=32  Identities=28%  Similarity=0.462  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ..|+|||+|-.|..+|..|+++|. +++++|..
T Consensus        25 ~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D   57 (339)
T PRK07688         25 KHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD   57 (339)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            579999999999999999999996 99999984

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=91.80  E-value=0.28  Score=41.99  Aligned_cols=35  Identities=20%  Similarity=0.210  Sum_probs=31.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ...++|+|+|+.+...|..++..|++|+|+|.++.
T Consensus       100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~  134 (246)
T TIGR02964       100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA  134 (246)
T ss_pred             CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence            46899999999999999999999999999997644

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=91.77  E-value=0.21  Score=41.10  Aligned_cols=30  Identities=23%  Similarity=0.244  Sum_probs=27.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~   35 (342)
                      .+.|+|+|-.|...|.+|+++|++|++-=+
T Consensus         3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~   32 (211)
T COG2085           3 IIAIIGTGNIGSALALRLAKAGHEVIIGSS   32 (211)
T ss_pred             EEEEeccChHHHHHHHHHHhCCCeEEEecC
Confidence            489999999999999999999999998733

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=91.76  E-value=0.2  Score=44.32  Aligned_cols=32  Identities=19%  Similarity=0.259  Sum_probs=30.0

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|.|||.|.-|...|..|+++|++|++++++.
T Consensus         3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~   34 (296)
T PRK15461          3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP   34 (296)
T ss_pred             eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence            69999999999999999999999999999863

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=91.74  E-value=0.23  Score=43.29  Aligned_cols=34  Identities=18%  Similarity=0.244  Sum_probs=31.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      +|.+||-|+-|...|.+|.++|++|+|+++....
T Consensus         2 kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~k   35 (286)
T COG2084           2 KIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEK   35 (286)
T ss_pred             eEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhh
Confidence            6999999999999999999999999999997544

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=91.59  E-value=0.28  Score=39.60  Aligned_cols=31  Identities=23%  Similarity=0.277  Sum_probs=28.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      .|+|||+|-.|...|..|++.|. +++++|..
T Consensus         1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D   32 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD   32 (174)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            48999999999999999999996 69999985

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=91.55  E-value=0.18  Score=50.37  Aligned_cols=33  Identities=27%  Similarity=0.338  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|+.++.+|++|+++|..+
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~  368 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP  368 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence            359999999999999999999999999999864

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=91.55  E-value=0.2  Score=47.24  Aligned_cols=34  Identities=18%  Similarity=0.188  Sum_probs=31.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      .+|.|||.|.-|...|..|+++|++|.++++...
T Consensus         2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~   35 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYE   35 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            3799999999999999999999999999998543

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=91.54  E-value=0.56  Score=44.28  Aligned_cols=54  Identities=19%  Similarity=0.134  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHcCcE--EEcCCccceEEEcCCCcEEEEEe-C-Cc---EEEcCEEEECCCC
Q 019351          232 GELPQAFARLSAVYGGT--YMLNKPECKVEFDEEGKVVGVTS-E-GE---TAKCKKVVCDPSY  287 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~--i~~~~~V~~i~~~~~~~~~~v~~-~-g~---~~~a~~vI~~~~~  287 (342)
                      .++.+-|.+.++..|+.  |+++++|++|+.. +++ +.|++ + ++   +..+|+||+|+|.
T Consensus       111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~-~~~-w~V~~~~~~~~~~~~~~d~VIvAtG~  171 (461)
T PLN02172        111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPV-DGK-WRVQSKNSGGFSKDEIFDAVVVCNGH  171 (461)
T ss_pred             HHHHHHHHHHHHHcCCcceEEecCEEEEEeec-CCe-EEEEEEcCCCceEEEEcCEEEEeccC
Confidence            45667777888888887  9999999999876 554 55554 2 22   4579999999984

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=91.43  E-value=0.32  Score=37.76  Aligned_cols=31  Identities=23%  Similarity=0.316  Sum_probs=28.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      .|+|||.|-.|...|..|++.|. +++++|..
T Consensus         1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            48999999999999999999996 79999985

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=91.42  E-value=0.28  Score=44.18  Aligned_cols=32  Identities=25%  Similarity=0.391  Sum_probs=29.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ..|+|||+|-.|..+|..|+++|. +++|+|..
T Consensus        25 ~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D   57 (338)
T PRK12475         25 KHVLIVGAGALGAANAEALVRAGIGKLTIADRD   57 (338)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            579999999999999999999996 89999985

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=91.39  E-value=0.17  Score=38.42  Aligned_cols=33  Identities=18%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..+|.|||+|-.|-..|..|.++|+.|.-+..+
T Consensus        10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr   42 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR   42 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred             ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence            368999999999999999999999999887664

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=91.35  E-value=0.24  Score=46.94  Aligned_cols=32  Identities=31%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|.|+|.|-+|+++|..|.+.|.+|++.|+.
T Consensus        16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~   47 (473)
T PRK00141         16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDN   47 (473)
T ss_pred             CeEEEEccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            35999999999999999999999999999975

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=91.21  E-value=0.33  Score=40.58  Aligned_cols=33  Identities=18%  Similarity=0.198  Sum_probs=29.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ...|+|||+|-.|..+|..|++.|. +++++|..
T Consensus        28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D   61 (212)
T PRK08644         28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD   61 (212)
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            3579999999999999999999995 69999985

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=91.11  E-value=0.29  Score=41.35  Aligned_cols=32  Identities=19%  Similarity=0.416  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC---eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL---KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~---~V~vlE~~   36 (342)
                      ..|+|+|+|-+|..+|..|.+.|.   +|.++++.
T Consensus        26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~   60 (226)
T cd05311          26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK   60 (226)
T ss_pred             CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCC
Confidence            479999999999999999999995   59999997

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=91.05  E-value=0.26  Score=43.32  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|+|+|.|-.|..+|..|+..|.+|+++++..
T Consensus       152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999863

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PRK05442 malate dehydrogenase; Provisional

Probab=91.03  E-value=0.32  Score=43.54  Aligned_cols=37  Identities=16%  Similarity=0.117  Sum_probs=32.2

Q ss_pred             CCCcccEEEECC-CchHHHHHHhhhhCCC-------eEEEEcCCC
Q 019351            1 MDEEYDVIVLGT-GLKECILSGLLSVDGL-------KVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~-GiaGl~aA~~L~~~G~-------~V~vlE~~~   37 (342)
                      |....+|+|||+ |..|.++|+.|...|.       ++.++|.+.
T Consensus         1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~   45 (326)
T PRK05442          1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP   45 (326)
T ss_pred             CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC
Confidence            777789999998 9999999999998773       799999853

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=90.98  E-value=0.23  Score=49.44  Aligned_cols=33  Identities=27%  Similarity=0.279  Sum_probs=29.8

Q ss_pred             ccEEEECCCchHHHHHHhhh-hCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~-~~G~~V~vlE~~~   37 (342)
                      ..|+|||+|..|...|..++ ++|++|+++|..+
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~  338 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINP  338 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence            35999999999999999998 5899999999874

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.96  E-value=0.32  Score=45.68  Aligned_cols=33  Identities=18%  Similarity=0.284  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|+|-|.+|++++..|+++|++|++.|...
T Consensus         7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~   39 (438)
T PRK03806          7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI   39 (438)
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            469999999999999999999999999999765

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.95  E-value=0.24  Score=46.78  Aligned_cols=32  Identities=28%  Similarity=0.318  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|.|||.|.+|+++|..|.++|++|.+.|..
T Consensus        10 ~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~   41 (460)
T PRK01390         10 KTVAVFGLGGSGLATARALVAGGAEVIAWDDN   41 (460)
T ss_pred             CEEEEEeecHhHHHHHHHHHHCCCEEEEECCC
Confidence            36899999999999999999999999999965

>PTZ00117 malate dehydrogenase; Provisional

Probab=90.94  E-value=0.35  Score=43.23  Aligned_cols=34  Identities=15%  Similarity=0.154  Sum_probs=30.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~   37 (342)
                      ..+|+|||+|..|.+.|+.|+..| .++.++|.+.
T Consensus         5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~   39 (319)
T PTZ00117          5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK   39 (319)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence            358999999999999999999999 6899999854

>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]

Probab=90.85  E-value=0.15  Score=45.76  Aligned_cols=39  Identities=23%  Similarity=0.276  Sum_probs=36.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..+|||||+.||-.+.--.+.|.+|+++|-.+.+||.+-
T Consensus       213 ~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~mD  251 (506)
T KOG1335|consen  213 KLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVMD  251 (506)
T ss_pred             eEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhccccC
Confidence            689999999999999999999999999999999999853

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=90.77  E-value=0.38  Score=34.31  Aligned_cols=31  Identities=23%  Similarity=0.353  Sum_probs=27.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCC---CeEEEE-cCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG---LKVLHM-DRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G---~~V~vl-E~~   36 (342)
                      +|.|||+|-.|.+.+..|.++|   .+|.+. +++
T Consensus         1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~   35 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRS   35 (96)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESS
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCc
Confidence            4789999999999999999999   899966 774

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=90.76  E-value=0.24  Score=49.41  Aligned_cols=33  Identities=33%  Similarity=0.257  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHHhhh-hCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLS-VDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~-~~G~~V~vlE~~~   37 (342)
                      ..|+|||+|..|...|..++ .+|++|+++|..+
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~  343 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP  343 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence            35999999999999999998 8899999999854

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=90.70  E-value=0.38  Score=41.08  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~   36 (342)
                      ...|+|||+|-.|..+|..|++.| .+++++|..
T Consensus        24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D   57 (240)
T TIGR02355        24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD   57 (240)
T ss_pred             CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            368999999999999999999999 589999885

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=90.64  E-value=0.37  Score=42.81  Aligned_cols=32  Identities=22%  Similarity=0.415  Sum_probs=28.4

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      +|+|||+|..|.++|+.|...|.  ++.++|.+.
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~   34 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE   34 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence            58999999999999999999884  799999753

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=90.63  E-value=0.33  Score=44.67  Aligned_cols=33  Identities=18%  Similarity=0.110  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|+|.|..|..+|..|+..|.+|+|+|..+
T Consensus       196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp  228 (406)
T TIGR00936       196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP  228 (406)
T ss_pred             CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence            479999999999999999999999999998765

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=90.54  E-value=0.28  Score=46.18  Aligned_cols=32  Identities=25%  Similarity=0.396  Sum_probs=30.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus         2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~   33 (453)
T PRK09496          2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE   33 (453)
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            69999999999999999999999999999854

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=90.47  E-value=0.36  Score=42.90  Aligned_cols=33  Identities=27%  Similarity=0.407  Sum_probs=29.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      .+|+|||+|..|.+.|..|++.|.  +|.+++++.
T Consensus         7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~   41 (307)
T PRK07502          7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA   41 (307)
T ss_pred             cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence            479999999999999999999994  899998863

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=90.42  E-value=0.41  Score=41.01  Aligned_cols=33  Identities=27%  Similarity=0.358  Sum_probs=30.0

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~   36 (342)
                      ...|+|||+|-.|..+|..|+..| .+++++|..
T Consensus        32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   65 (245)
T PRK05690         32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD   65 (245)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            368999999999999999999999 589999885

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=90.40  E-value=0.31  Score=50.17  Aligned_cols=33  Identities=21%  Similarity=0.132  Sum_probs=30.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      +|+|||||..|+=+|..+.+.|.+|+++.+++.
T Consensus       449 ~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~  481 (944)
T PRK12779        449 EVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK  481 (944)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence            699999999999999999999999999988753

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=90.38  E-value=0.99  Score=42.97  Aligned_cols=42  Identities=29%  Similarity=0.371  Sum_probs=37.0

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC--------CCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--------YYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~--------~~GG~~~t   45 (342)
                      +||++|||+|.+|+.||..+++.|++|+++|+..        .+||.|..
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~~G~~v~lie~~~~~~~~~~~~~GGtc~n   51 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAADYGAKVMLLDFVTPTPLGTRWGIGGTCVN   51 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCCcceeccccccc
Confidence            5899999999999999999999999999999741        58887643

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=90.37  E-value=0.45  Score=39.45  Aligned_cols=33  Identities=18%  Similarity=0.324  Sum_probs=30.0

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ...|+|||.|-.|..+|..|++.|. +++++|..
T Consensus        21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            3679999999999999999999995 89999984

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=90.35  E-value=0.35  Score=42.84  Aligned_cols=32  Identities=16%  Similarity=0.247  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|.|||.|..|...|..|+++|++|.+++++.
T Consensus         2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~   33 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQ   33 (298)
T ss_pred             EEEEEcchHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999998864

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>PRK08328 hypothetical protein; Provisional

Probab=90.31  E-value=0.4  Score=40.68  Aligned_cols=32  Identities=25%  Similarity=0.332  Sum_probs=29.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~   36 (342)
                      ..|+|||+|-.|..+|..|++.| .+++++|..
T Consensus        28 ~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D   60 (231)
T PRK08328         28 AKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ   60 (231)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence            57999999999999999999999 579999874

>PLN02602 lactate dehydrogenase

Probab=90.28  E-value=0.47  Score=42.92  Aligned_cols=33  Identities=21%  Similarity=0.264  Sum_probs=29.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      .+|+|||+|..|.++|+.|+..|.  ++.++|.+.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~   72 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNP   72 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            699999999999999999998884  799999854

>PRK06849 hypothetical protein; Provisional

Probab=90.24  E-value=0.47  Score=43.76  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCCc-hHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            1 MDEEYDVIVLGTGL-KECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         1 m~~~~DViIiG~Gi-aGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      |+....|+|+|++. .|+..|..|.++|++|++++....
T Consensus         1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~   39 (389)
T PRK06849          1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLKY   39 (389)
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence            66677899999998 699999999999999999999754

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=90.19  E-value=0.45  Score=37.38  Aligned_cols=32  Identities=25%  Similarity=0.365  Sum_probs=28.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~   36 (342)
                      ..++|+|+|..|...|..|.+.| .+|.+++++
T Consensus        20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~   52 (155)
T cd01065          20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRT   52 (155)
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCC
Confidence            47999999999999999999996 889999875

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=90.19  E-value=0.49  Score=38.91  Aligned_cols=32  Identities=28%  Similarity=0.391  Sum_probs=28.8

Q ss_pred             ccEEEECC-CchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..++|+|| |-.|..+|..|++.|.+|+++.++
T Consensus        29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~   61 (194)
T cd01078          29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD   61 (194)
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            47999996 999999999999999999999764

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=90.15  E-value=1  Score=39.99  Aligned_cols=55  Identities=20%  Similarity=0.207  Sum_probs=43.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      ..|.+.+.+.++..|+++.. ..|.+++.. ++ ...|+++.++++|+.||+|+|..+
T Consensus        61 ~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~-~~-~F~v~t~~~~~~ak~vIiAtG~~~  115 (305)
T COG0492          61 PELMEQMKEQAEKFGVEIVE-DEVEKVELE-GG-PFKVKTDKGTYEAKAVIIATGAGA  115 (305)
T ss_pred             HHHHHHHHHHHhhcCeEEEE-EEEEEEeec-Cc-eEEEEECCCeEEEeEEEECcCCcc
Confidence            46788888888888999888 777777765 32 577888666699999999998764

>PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.12  E-value=0.33  Score=44.90  Aligned_cols=30  Identities=20%  Similarity=0.170  Sum_probs=27.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .|.|+|.|-+|+++|..|. +|.+|++.|..
T Consensus         2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~   31 (401)
T PRK03815          2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDK   31 (401)
T ss_pred             eEEEEeECHHHHHHHHHHh-CCCeEEEEcCC
Confidence            4899999999999999999 99999999954

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=90.09  E-value=0.41  Score=41.72  Aligned_cols=32  Identities=19%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..++|+|+|-+|.++|..|++.|.+|+|+.+.
T Consensus       118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~  149 (270)
T TIGR00507       118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT  149 (270)
T ss_pred             CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36899999999999999999999999999874

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=89.96  E-value=0.36  Score=38.18  Aligned_cols=33  Identities=21%  Similarity=0.177  Sum_probs=26.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..++|+|=|..|-.+|..|+..|.+|+|.|..+
T Consensus        24 k~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DP   56 (162)
T PF00670_consen   24 KRVVVIGYGKVGKGIARALRGLGARVTVTEIDP   56 (162)
T ss_dssp             SEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSH
T ss_pred             CEEEEeCCCcccHHHHHHHhhCCCEEEEEECCh
Confidence            369999999999999999999999999999964

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=89.84  E-value=0.34  Score=47.05  Aligned_cols=33  Identities=15%  Similarity=0.347  Sum_probs=31.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -+++|+|.|-.|-..|..|.++|++|+++|+++
T Consensus       418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~  450 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR  450 (558)
T ss_pred             CCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence            468999999999999999999999999999974

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=89.82  E-value=0.41  Score=41.59  Aligned_cols=33  Identities=18%  Similarity=0.245  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC---CeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG---LKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G---~~V~vlE~~~   37 (342)
                      .+|.|||+|..|.+.|..|.++|   .+|.+++++.
T Consensus         3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~   38 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSP   38 (267)
T ss_pred             CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCH
Confidence            36999999999999999999999   7899999863

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
1gnd_A	447	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		1e-126
1lv0_A	449	Crystal Structure Of The Rab Effector Guanine Nucle		1e-126
1d5t_A	433	Guanine Nucleotide Dissociation Inhibitor, Alpha-Is		1e-126
3cph_G	451	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-109
1ukv_G	453	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-108
3p1w_A	475	Crystal Structure Of Rab Gdi From Plasmodium Falcip		1e-100
1ltx_R	650	Structure Of Rab Escort Protein-1 In Complex With R		9e-27
1vg0_A	650	The Crystal Structures Of The Rep-1 Protein In Comp		1e-26

>pdb|1GND|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 447

Iteration: 1
 Score =  448 bits (1153), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 1   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 61  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 239
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 240 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 298
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 299 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 332

>pdb|1LV0|A Chain A, Crystal Structure Of The Rab Effector Guanine Nucleotide Dissociation Inhibitor (Gdi) In Complex With A Geranylgeranyl (Gg) Peptide Length = 449

Iteration: 1
 Score =  448 bits (1152), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62
Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 300
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 301 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 334

>pdb|1D5T|A Chain A, Guanine Nucleotide Dissociation Inhibitor, Alpha-Isoform Length = 433

Iteration: 1
 Score =  447 bits (1150), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 212/334 (63%), Positives = 273/334 (81%), Gaps = 3/334 (0%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62
Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122
Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182
Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241
Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 300
Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 301 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 334

>pdb|3CPH|G Chain G, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 451

Iteration: 1
 Score =  389 bits (1000), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/339 (54%), Positives = 259/339 (76%), Gaps = 7/339 (2%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-- 58
           +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N  
Sbjct: 6   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 65
Query: 59  --EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
             E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 66  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 125
Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
           KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL
Sbjct: 126 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 185
Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
            ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 186 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 244
Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNKVRKV 295
            FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K +  
Sbjct: 245 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKST 304
Query: 296 G-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SDI
Sbjct: 305 GQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDI 343

>pdb|1UKV|G Chain G, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 453

Iteration: 1
 Score =  389 bits (1000), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 185/339 (54%), Positives = 259/339 (76%), Gaps = 7/339 (2%)
Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-- 58
           +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N  
Sbjct: 8   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 67
Query: 59  --EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
             E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 68  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 127
Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
           KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL
Sbjct: 128 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 187
Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
            ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 188 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 246
Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNKVRKV 295
            FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K +  
Sbjct: 247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKST 306
Query: 296 G-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SDI
Sbjct: 307 GQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDI 345

>pdb|3P1W|A Chain A, Crystal Structure Of Rab Gdi From Plasmodium Falciparum, Pfl2060c Length = 475

Iteration: 1
 Score =  361 bits (926), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 178/344 (51%), Positives = 242/344 (70%), Gaps = 14/344 (4%)
Query: 3   EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPP 62
           E YDVI+LGTGLKECILSGLLS  G K+L +DRN YYGGE++SLNL  L+  F+  E  P
Sbjct: 19  EHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIP 78
Query: 63  AHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGK-------- 114
           +  G +R +NVD+IPKFI+  G LV++L  T VT YL +  V+GS+VY   K        
Sbjct: 79  SKYGENRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEK 138
Query: 115 -VHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAK 173
            +HKVPATDMEAL SPL+ + EK R + F+ YV ++D N   T + +D  ++T  E+   
Sbjct: 139 FIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIYKH 198
Query: 174 YGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGE 233
           + L   TIDF+GHA+AL+ +D YL +PA  T++R+KLY +SI+ F G SP+IYPLYGLG 
Sbjct: 199 FNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFIYPLYGLGG 257
Query: 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGV-TSEGETAKCKKVVCDPSY---LP 289
           +P+ F+R+ A+ GGT+MLNK      FD++ KV G+ +S+GE A C KV+CDPSY   L 
Sbjct: 258 IPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMHLK 317
Query: 290 NKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           NK++K+G+V R I I+S+PIP TN ++S Q+I+PQ QL R+SDI
Sbjct: 318 NKIKKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLNRKSDI 361

>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab Geranylgeranyl Transferase And Isoprenoid Length = 650

Iteration: 1
 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 138/268 (51%), Gaps = 17/268 (6%)
Query: 69  RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
           R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S
Sbjct: 222 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNS 281
Query: 129 PLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGH 186
             + + EKR   KF  +  +Y+E  ++ + +EG      T  E +    L  N   F+ H
Sbjct: 282 KQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLH 336
Query: 187 ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYG 246
           ++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+G
Sbjct: 337 SIAMTSETTSC---TVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFG 392
Query: 247 GTYML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLP-NKVRKVG--RVARA 301
           G Y L +  +C V   E  K   V  + G+    K  + + SYL  N   +V   +++RA
Sbjct: 393 GIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRA 452
Query: 302 IAIMSHPIPNTNDSHSVQVI-LPQKQLG 328
           + I    +  T+    V ++ +P ++ G
Sbjct: 453 VLITDGSVLKTDADQQVSILTVPAEEPG 480

>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 650

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 75/268 (27%), Positives = 138/268 (51%), Gaps = 17/268 (6%)
Query: 69  RDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKS 128
           R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S
Sbjct: 222 RRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNS 281
Query: 129 PLMGIFEKRRARKFFIYVQDYDE--NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGH 186
             + + EKR   KF  +  +Y+E  ++ + +EG      T  E +    L  N   F+ H
Sbjct: 282 KQLTMVEKRMLMKFLTFCVEYEEHPDEYRAYEG-----TTFSEYLKTQKLTPNLQYFVLH 336
Query: 187 ALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYG 246
           ++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+G
Sbjct: 337 SIAMTSETTSC---TVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFG 392
Query: 247 GTYML-NKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLP-NKVRKVG--RVARA 301
           G Y L +  +C V   E  K   V  + G+    K  + + SYL  N   +V   +++RA
Sbjct: 393 GIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRA 452
Query: 302 IAIMSHPIPNTNDSHSVQVI-LPQKQLG 328
           + I    +  T+    V ++ +P ++ G
Sbjct: 453 VLITDGSVLRTDADQQVSILTVPAEEPG 480

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	1e-138
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	1e-132
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	1e-126
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	1e-101
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	4e-28
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	1e-09
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	4e-07
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	1e-06
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	3e-06
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	1e-05
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	4e-04

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* Length = 453

 Score =  400 bits (1028), Expect = e-138
 Identities = 184/340 (54%), Positives = 258/340 (75%), Gaps = 7/340 (2%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFR---- 56
           +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+    
Sbjct: 8   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 67

Query: 57  GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
             E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 68  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 127

Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
           KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL
Sbjct: 128 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 187

Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
            ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+ G SPY+YP+YGLGELPQ
Sbjct: 188 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ 246

Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNKVRKV 295
            FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K +  
Sbjct: 247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKST 306

Query: 296 G-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQ 334
           G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SDI 
Sbjct: 307 GQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIY 346

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A Length = 433

 Score =  383 bits (985), Expect = e-132
 Identities = 212/335 (63%), Positives = 273/335 (81%), Gaps = 3/335 (0%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVA 299
           RLSA+YGGTYMLNKP   +   E GKVVGV SEGE A+CK+++CDPSY+P++VRK G+V 
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIM-ENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVI 300

Query: 300 RAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQ 334
           R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI 
Sbjct: 301 RIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIY 335

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score =  370 bits (950), Expect = e-126
 Identities = 177/347 (51%), Positives = 240/347 (69%), Gaps = 14/347 (4%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             E YDVI+LGTGLKECILSGLLS  G K+L +DRN YYGGE++SLNL  L+  F+  E 
Sbjct: 17  QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKEN 76

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGK------ 114
            P+  G +R +NVD+IPKFI+  G LV++L  T VT YL +  V+GS+VY   K      
Sbjct: 77  IPSKYGENRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTS 136

Query: 115 ---VHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELI 171
              +HKVPATDMEAL SPL+ + EK R + F+ YV ++D N   T + +D  ++T  E+ 
Sbjct: 137 EKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEIY 196

Query: 172 AKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGL 231
             + L   TIDF+GHA+AL+ +D YL +PA  T++R+KLY +SI+ F G SP+IYPLYGL
Sbjct: 197 KHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFIYPLYGL 255

Query: 232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE-GETAKCKKVVCDPSYLP- 289
           G +P+ F+R+ A+ GGT+MLNK      FD++ KV G+ S  GE A C KV+CDPSY+  
Sbjct: 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMH 315

Query: 290 --NKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQ 334
             NK++K+G+V R I I+S+PIP TN ++S Q+I+PQ QL R+SDI 
Sbjct: 316 LKNKIKKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLNRKSDIY 362

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  310 bits (795), Expect = e-101
 Identities = 67/324 (20%), Positives = 135/324 (41%), Gaps = 23/324 (7%)

Query: 27  GLKVLHMDRNDYYGGESSSLNLIQL--W---------KRFRGNEQPPAHLGSSRDYNVDM 75
             +V   +         +  +  +                +        +   R +N+D+
Sbjct: 169 SPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDL 228

Query: 76  IPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFE 135
           + K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +   S  + + E
Sbjct: 229 VSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVE 288

Query: 136 KRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDR 195
           KR   KF  +  +Y+   P  +   +    T  E +    L  N   F+ H++A+  +  
Sbjct: 289 KRMLMKFLTFCVEYE-EHPDEYRAYE--GTTFSEYLKTQKLTPNLQYFVLHSIAMTSETT 345

Query: 196 YLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPE 255
                 +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV+GG Y L    
Sbjct: 346 S---CTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSV 401

Query: 256 CKVEFDEEGKVVG--VTSEGETAKCKKVVCDPSYLPNKVRK---VGRVARAIAIMSHPIP 310
             +  D+E +     +   G+    K  + + SYL           +++RA+ I    + 
Sbjct: 402 QCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDGSVL 461

Query: 311 NTNDSHSVQVILPQKQLGRRSDIQ 334
            T+    V ++    +      ++
Sbjct: 462 RTDADQQVSILTVPAEEPGSFAVR 485

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* Length = 650

 Score =  114 bits (285), Expect = 4e-28
 Identities = 31/164 (18%), Positives = 58/164 (35%), Gaps = 9/164 (5%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
           +  ++DVIV+GTGL E I++   S  G +VLH+D   YYGG  +S +   L    +  ++
Sbjct: 5   LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQE 64

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYL----YFKAVDGSFVYNKGKVH 116
               +  +  +   ++      N   + +       +++    Y        V   G + 
Sbjct: 65  NNDVVTENSMWQEQILE-----NEEAIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQ 119

Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM 160
           K  A+   A  +      E          +       P      
Sbjct: 120 KNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQC 163

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 58.3 bits (141), Expect = 1e-09
 Identities = 47/291 (16%), Positives = 92/291 (31%), Gaps = 37/291 (12%)

Query: 1   MDEEYDVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRF 55
           M  + DV+V+G G+     SG+     L   GL V+ ++  D  GG            R 
Sbjct: 1   MSNKCDVVVVGGGI-----SGMAAAKLLHDSGLNVVVLEARDRVGG------------RT 43

Query: 56  RGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKV 115
                      + +   VD+   ++      +  L      +      V+    + KGK 
Sbjct: 44  YTLR-------NQKVKYVDLGGSYVGPTQNRILRLAKELGLETYKVNEVERLIHHVKGKS 96

Query: 116 HKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTH-EGMDLTRVTTRELIAKY 174
           +         + +P+  +      R      ++   + P       +   +T +EL+ K 
Sbjct: 97  YPFRG-PFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKL 155

Query: 175 GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYA--ESIARFQGGSPYIYPLYGLG 232
              ++        + L          AL  +  +K       I     G      + G G
Sbjct: 156 CWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSG 215

Query: 233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 283
           ++ +       + G    L +P   ++   E  +V  T   E  + K V+ 
Sbjct: 216 QVSERIM---DLLGDRVKLERPVIYIDQTRENVLV-ETLNHEMYEAKYVIS 262

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* Length = 431

 Score = 50.2 bits (120), Expect = 4e-07
 Identities = 38/284 (13%), Positives = 78/284 (27%), Gaps = 37/284 (13%)

Query: 5   YDVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE 59
           YD IV+G G      SGL     L+  G KVL ++  +  GG + S          R   
Sbjct: 2   YDAIVVGGG-----FSGLKAARDLTNAGKKVLLLEGGERLGGRAYSR-------ESRNVP 49

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
                +G +  +             A +            +             +   +P
Sbjct: 50  GLRVEIGGAYLHRKHHPR-----LAAELDRYGIPTAAASEFTSFRHRLGPTAVDQAFPIP 104

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
            ++  A+         +             D      ++ ++   +   E + K  L   
Sbjct: 105 GSEAVAV---------EAATYTLLRDAHRIDLEKGLENQDLEDLDIPLNEYVDKLDLPPV 155

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
           +  F+                AL  ++ +  +  SI         ++   G  +L  A +
Sbjct: 156 SRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLSLDEVFS-NGSADLVDAMS 214

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 283
           +          L      ++   +  V     +G   +   V+ 
Sbjct: 215 QE----IPEIRLQTVVTGIDQSGDV-VNVTVKDGHAFQAHSVIV 253

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} Length = 425

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 44/294 (14%), Positives = 84/294 (28%), Gaps = 57/294 (19%)

Query: 6   DVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
             +V+G GL      GL     LS  G +V   +R    GG  ++               
Sbjct: 2   KTVVIGAGL-----GGLLSAARLSKAGHEVEVFERLPITGGRFTN------LSY------ 44

Query: 61  PPAHLGSSRDYNVDMIPKFI---IANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHK 117
                   + + +      +      G L   L   +         V       +  + K
Sbjct: 45  --------KGFQLSSGAFHMLPNGPGGPLACFLKEVEA----SVNIVRSEMTTVRVPLKK 92

Query: 118 VPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLD 177
                ++  K      F    + K  + +     +  K          + +  I     D
Sbjct: 93  GNPDYVKGFKDISFNDFPSLLSYKDRMKIALLIVSTRKNRPSGS----SLQAWIKSQVSD 148

Query: 178 DNTIDFI----GHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGE 233
           +  I F     G AL+L  D+     P  +      ++      ++ G     P  G   
Sbjct: 149 EWLIKFADSFCGWALSLKSDEV----PVEE------VFEIIENMYRFGGTG-IPEGGCKG 197

Query: 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY 287
           +  A   + +  GG     +   K+   E GK  G+ ++        V+ +  +
Sbjct: 198 IIDALETVISANGGKIHTGQEVSKILI-ENGKAAGIIADDRIHDADLVISNLGH 250

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* Length = 453

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 42/290 (14%), Positives = 93/290 (32%), Gaps = 40/290 (13%)

Query: 3   EEYDVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRG 57
            + DV ++G G      SGL     L   GL V  ++  D  GG              R 
Sbjct: 4   LQRDVAIVGAGP-----SGLAAATALRKAGLSVAVIEARDRVGG--------------R- 43

Query: 58  NEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHT-DVTKYLYFKAVDGSFVYNKGKVH 116
                    +     +++  +++  +   +  L+    +  +  ++  +  ++ + G+  
Sbjct: 44  -----TWTDTIDGAVLEIGGQWVSPDQTALISLLDELGLKTFERYREGESVYISSAGERT 98

Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM-DLTRVTTRELIAKYG 175
           +         ++    +   R   +           +P  H    DL  V+ ++ +    
Sbjct: 99  RYTGDSFPTNETTKKEMD--RLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQS 156

Query: 176 LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARF--QGGSPYIYPLYGLGE 233
            D    D IG  +A     +  +  +      M   A S +    +        + G+ +
Sbjct: 157 DDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAASAGSFSHLVDEDFILDKRVIGGMQQ 216

Query: 234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC 283
           +    A      G    LN P   V+++E G  V +       +  +V+ 
Sbjct: 217 VSIRMA---EALGDDVFLNAPVRTVKWNESGATV-LADGDIRVEASRVIL 262

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 43/314 (13%), Positives = 84/314 (26%), Gaps = 73/314 (23%)

Query: 3   EEYDVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRG 57
              +V V+G G+     SGL     L   G   + ++ +   GG   +  L         
Sbjct: 15  TGMNVAVVGGGI-----SGLAVAHHLRSRGTDAVLLESSARLGGAVGTHAL--------- 60

Query: 58  NEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIH----TDVTKYLYFKAVDGSFVYNKG 113
                        Y V+  P   +      R L          +     A    +VY +G
Sbjct: 61  -----------AGYLVEQGPNSFLDREPATRALAAALNLEGRIRAAD-PAAKRRYVYTRG 108

Query: 114 KVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAK 173
           ++  VPA+    L S ++ +  + R                +  EG+D    +      +
Sbjct: 109 RLRSVPASPPAFLASDILPLGARLRVAGELF--------SRRAPEGVD---ESLAAFGRR 157

Query: 174 -YG--LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIAR------------- 217
             G       +D +   +     ++         + +M+    S+               
Sbjct: 158 HLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAA 217

Query: 218 ------FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS 271
                  +          GL  L  A A      G    +      +  ++ G  + +  
Sbjct: 218 LPAGTAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLAREDGGWRLIIEE 274

Query: 272 --EGETAKCKKVVC 283
                     +VV 
Sbjct: 275 HGRRAELSVAQVVL 288

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 45/303 (14%), Positives = 91/303 (30%), Gaps = 76/303 (25%)

Query: 6   DVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFR---- 56
             +V+G GL      GL     L+ +G +++ ++++   GG  ++L      K F+    
Sbjct: 2   RAVVVGAGL-----GGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPY----KGFQLSTG 52

Query: 57  -------GNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFV 109
                  G + P AHL       V+++                    K          + 
Sbjct: 53  ALHMIPHGEDGPLAHLLRILGAKVEIVNSN----------------PKGKIL------W- 89

Query: 110 YNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRE 169
             +GK+     +         + + EK +A K    ++            +    +   E
Sbjct: 90  --EGKIFHYRESW------KFLSVKEKAKALKLLAEIRMNK---------LPKEEIPADE 132

Query: 170 LIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY 229
            I +   ++  +  +  + A        +    D    ++L  E  A  + G P      
Sbjct: 133 WIKEKIGENEFLLSVLESFAGW----ADSVSLSDL-TALELAKEIRAALRWGGPG-LIRG 186

Query: 230 GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVC--DPSY 287
           G   +     R+     G  +  K   ++   EE KV   T + E       +       
Sbjct: 187 GCKAVIDELERIIMENKGKILTRKEVVEINI-EEKKV--YTRDNEEYSFDVAISNVGVRE 243

Query: 288 LPN 290
              
Sbjct: 244 TVK 246

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 4e-05
 Identities = 32/287 (11%), Positives = 70/287 (24%), Gaps = 123/287 (42%)

Query: 24  SVDGLKVLHMDRNDYYGG--ESSSLNLIQLWKRFRGNEQPP-AHLGSSRDYNVDMIPKFI 80
            +      H+  + +          +L+  +   R  + P      + R   + +I    
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--RLSII---- 333

Query: 81  IANGALVRVLIHT-DVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLM-------G 132
                 +R  + T D  K+            N  K+  +  + +  L+            
Sbjct: 334 ---AESIRDGLATWDNWKH-----------VNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 133 IFEK-----------------------------------RRARKFFIYVQDYD------- 150
           +F                                     ++ ++  I +           
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439

Query: 151 ENDPKTHEGMDLTRVTTRELIAKY---------GLDDNTID-----FIG-HALALHRDDR 195
           EN+   H          R ++  Y          L    +D      IG H   +   +R
Sbjct: 440 ENEYALH----------RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPER 489

Query: 196 -------YLN------------------EPALDTVKRMKLYAESIAR 217
                  +L+                     L+T++++K Y   I  
Sbjct: 490 MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD 536

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score = 41.1 bits (96), Expect = 4e-04
 Identities = 40/312 (12%), Positives = 84/312 (26%), Gaps = 61/312 (19%)

Query: 2   DEEYDVIVLGTGLKECILSGL-----------LSVDGLKVLHMDRNDYYGGESSSLNLIQ 50
           D +  V+++G G+     +GL                L++  ++ +   GG         
Sbjct: 3   DGKKHVVIIGGGI-----TGLAAAFYMEKEIKEKNLPLELTLVEASPRVGG--------- 48

Query: 51  LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHT-DVTKYLYFKAVDGSFV 109
              + +  ++          Y ++  P   +        L+    +   L   A   S+V
Sbjct: 49  ---KIQTVKKD--------GYIIERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYV 97

Query: 110 YNKGKVHKVPA-------TDMEAL-KSPLMGIFEKRRARKFFIYVQDYDENDPKTHE--- 158
                +H +P        T +     + L  +  K RA   FI      ++D    E   
Sbjct: 98  LVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTKDDQSLGEFFR 157

Query: 159 ---GMDLTRVTTRELIAKYGLDDNTIDFIGHAL----ALHRDDRYLNEPALDTVKRMKLY 211
              G ++       L++     D     +           +  R L      T  +    
Sbjct: 158 RRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTRPQGSGQ 217

Query: 212 AESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS 271
             +  +      +     GL  L +   +   +            K+        +    
Sbjct: 218 QLTAKK---QGQFQTLSTGLQTLVEEIEK--QLKLTKVYKGTKVTKLSHSGSCYSL-ELD 271

Query: 272 EGETAKCKKVVC 283
            G T     V+ 
Sbjct: 272 NGVTLDADSVIV 283

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	100.0
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	100.0
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	100.0
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	100.0
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.94
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.91
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.9
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.9
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.89
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.89
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.89
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.88
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.88
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.87
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.86
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.85
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.81
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.8
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.76
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.76
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.75
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.75
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.74
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.73
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.71
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.69
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.69
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.61
3dme_A	369	Conserved exported protein; structural genomics, P	99.6
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	99.6
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	99.59
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	99.54
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.52
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.5
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	99.49
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	99.48
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	99.47
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	99.47
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	99.47
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	99.43
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.42
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.41
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	99.41
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.4
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	99.4
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	99.39
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	99.38
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	99.38
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.38
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	99.36
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	99.36
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	99.34
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	99.32
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	99.3
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	99.3
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	99.3
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	99.29
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	99.29
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	99.29
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	99.26
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	99.26
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	99.21
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	99.2
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	99.15
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	99.15
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	99.14
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	99.14
3atr_A	453	Conserved archaeal protein; saturating double bond	99.14
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	99.13
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	99.12
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	99.11
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	99.11
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	99.11
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	99.1
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	99.1
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	99.09
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	99.08
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	99.04
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	99.03
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	99.02
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	99.02
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	99.01
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	99.01
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	99.01
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	99.0
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	99.0
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	98.99
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	98.99
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	98.98
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	98.95
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	98.95
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	98.92
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	98.92
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	98.92
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	98.89
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	98.89
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	98.88
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	98.88
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	98.87
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	98.86
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	98.85
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.84
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	98.82
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	98.81
4fk1_A	304	Putative thioredoxin reductase; structural genomic	98.81
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	98.8
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	98.79
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	98.77
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	98.74
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	98.72
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	98.68
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	98.66
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	98.65
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	98.64
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	98.64
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	98.64
4dna_A	463	Probable glutathione reductase; structural genomic	98.6
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	98.59
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	98.59
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	98.58
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	98.58
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	98.58
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	98.58
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	98.57
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	98.57
1ojt_A	482	Surface protein; redox-active center, glycolysis,	98.56
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	98.55
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	98.54
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	98.54
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	98.53
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	98.52
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.52
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.51
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	98.51
2cul_A	232	Glucose-inhibited division protein A-related PROT	98.5
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	98.48
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	98.48
3r9u_A	315	Thioredoxin reductase; structural genomics, center	98.47
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	98.47
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	98.46
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	98.45
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	98.45
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	98.45
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	98.43
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	98.43
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	98.43
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	98.42
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	98.42
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	98.41
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	98.41
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	98.41
2bry_A	497	NEDD9 interacting protein with calponin homology a	98.4
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	98.38
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	98.38
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	98.38
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.38
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	98.37
4hb9_A	412	Similarities with probable monooxygenase; flavin,	98.36
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	98.34
1fec_A	490	Trypanothione reductase; redox-active center, oxid	98.34
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	98.34
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	98.34
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	98.33
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	98.32
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	98.32
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	98.3
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	98.3
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	98.3
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	98.3
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	98.3
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	98.29
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	98.29
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	98.29
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	98.27
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	98.27
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	98.26
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	98.26
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.25
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	98.25
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	98.23
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	98.23
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	98.22
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	98.21
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	98.21
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.17
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	98.17
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	98.16
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	98.14
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	98.13
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	98.12
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	98.12
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	98.1
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	98.09
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.08
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	98.07
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	98.05
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	98.05
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	98.04
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	98.02
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	97.99
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	97.98
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	97.97
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.96
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	97.96
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	97.95
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	97.94
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	97.9
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.89
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	97.88
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	97.87
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.86
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	97.85
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	97.83
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.79
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	97.78
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	97.78
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.73
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	97.69
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.67
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.67
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	97.63
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	97.61
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.5
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.49
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.48
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.31
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.59
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	96.58
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	96.48
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	96.4
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	96.37
1id1_A	153	Putative potassium channel protein; RCK domain, E.	96.37
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	96.34
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.33
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	96.32
2cul_A	232	Glucose-inhibited division protein A-related PROT	96.3
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	96.26
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	96.22
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	96.2
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.19
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	96.16
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	96.05
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	96.04
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	95.96
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	95.95
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	95.92
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	95.9
3qha_A	296	Putative oxidoreductase; seattle structural genomi	95.77
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	95.77
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	95.76
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	95.75
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	95.74
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	95.74
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	95.73
4dna_A	463	Probable glutathione reductase; structural genomic	95.67
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	95.67
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	95.64
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	95.62
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	95.61
1fec_A	490	Trypanothione reductase; redox-active center, oxid	95.57
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	95.57
3c85_A	183	Putative glutathione-regulated potassium-efflux S	95.55
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.54
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	95.53
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	95.5
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	95.49
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	95.46
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.4
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	95.39
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	95.38
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	95.38
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	95.37
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	95.31
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.3
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	95.28
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	95.26
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	95.24
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.23
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	95.21
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	95.21
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	95.2
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	95.2
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	95.12
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	95.12
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	95.1
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	95.09
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	95.09
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	95.08
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	95.07
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	95.06
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	95.04
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	95.03
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	95.02
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.97
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	94.97
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	94.94
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	94.92
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	94.86
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	94.86
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	94.85
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	94.83
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	94.83
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	94.81
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	94.81
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	94.79
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	94.79
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	94.79
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	94.79
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	94.77
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	94.76
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	94.75
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	94.74
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	94.71
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	94.71
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	94.64
4g65_A	461	TRK system potassium uptake protein TRKA; structur	94.64
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	94.62
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	94.6
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	94.53
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	94.5
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.43
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	94.42
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	94.41
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	94.41
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	94.37
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	94.35
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	94.34
3tl2_A	315	Malate dehydrogenase; center for structural genomi	94.34
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	94.33
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	94.31
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	94.24
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	94.23
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	94.22
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	94.22
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	94.21
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	94.2
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	94.17
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	94.15
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	94.13
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	94.13
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	94.13
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	94.12
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	94.11
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	94.09
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	94.08
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	94.06
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	94.02
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	94.0
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	93.99
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	93.97
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	93.8
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	93.79
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	93.79
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	93.79
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	93.77
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	93.75
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	93.75
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	93.74
3r9u_A	315	Thioredoxin reductase; structural genomics, center	93.72
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	93.69
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	93.69
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.68
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	93.68
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	93.67
4ezb_A	317	Uncharacterized conserved protein; structural geno	93.67
4ffl_A	363	PYLC; amino acid, biosynthesis of pyrrolysine, iso	93.6
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	93.6
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	93.58
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	93.56
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	93.55
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	93.52
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	93.42
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	93.42
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	93.41
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	93.39
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	93.36
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	93.35
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	93.32
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	93.28
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	93.25
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	93.25
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	93.21
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	93.16
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	93.16
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	93.14
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.14
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	93.13
2bry_A	497	NEDD9 interacting protein with calponin homology a	93.11
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	93.1
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	93.1
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	93.09
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	93.08
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	93.06
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.01
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	93.0
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	93.0
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	92.98
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	92.95
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	92.86
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	92.79
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	92.77
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	92.76
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	92.75
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	92.72
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	92.72
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	92.66
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	92.6
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	92.6
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	92.59
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	92.54
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	92.53
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	92.47
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	92.45
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.4
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	92.39
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	92.39
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	92.36
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	92.32
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	92.24
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	92.23
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	92.22
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	92.21
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	92.18
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	92.17
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	92.08
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	92.06
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	92.02
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	92.0
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	91.93
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	91.92
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	91.82
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	91.82
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	91.82
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	91.76
1y7t_A	327	Malate dehydrogenase; NAD-dependent-MDH-NADPH comp	91.72
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	91.67
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	91.67
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	91.67
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	91.61
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	91.51
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	91.49
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	91.48
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	91.46
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	91.42
4hv4_A	494	UDP-N-acetylmuramate--L-alanine ligase; MURC, yers	91.41
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	91.4
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	91.39
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	91.38
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	91.33
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	91.3
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	91.25
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	91.22
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	91.1
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	91.06
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	91.04
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	90.93
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	90.92
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	90.88
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	90.87
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	90.79
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	90.78
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	90.77
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	90.73
4b4o_A	298	Epimerase family protein SDR39U1; isomerase; HET:	90.7
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	90.68
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	90.54
4gx0_A	565	TRKA domain protein; membrane protein, ION channel	90.51
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	90.51
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	90.51
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	90.48
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	90.46
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	90.4
3k5i_A	403	Phosphoribosyl-aminoimidazole carboxylase; purine	90.31
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	90.27
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	90.27
3vps_A	321	TUNA, NAD-dependent epimerase/dehydratase; tunicam	90.26
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	90.24
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	90.23
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	90.22
3enk_A	341	UDP-glucose 4-epimerase; seattle structural genomi	90.21
2f00_A	491	UDP-N-acetylmuramate--L-alanine ligase; amide bond	90.07
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	90.0
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	89.93
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	89.89
1b8p_A	329	Protein (malate dehydrogenase); oxidoreductase; 1.	89.86
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	89.85
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	89.57
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	89.5
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	89.48
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	89.45
1p3d_A	475	UDP-N-acetylmuramate--alanine ligase; alpha/beta p	89.32
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	89.31
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	89.29
1lnq_A	336	MTHK channels, potassium channel related protein;	89.25
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	88.77
4hb9_A	412	Similarities with probable monooxygenase; flavin,	89.11
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	89.1
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	89.1
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	89.08
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	89.06

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=6.6e-50  Score=369.23  Aligned_cols=336  Identities=52%  Similarity=0.932  Sum_probs=297.0

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchh
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (342)
                      |++++||+|||+|++|+++|+.|+++|++|+|+|+++++||.+++++..+++.+|..++..+..+|.++.|++|++|+++
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l   96 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFI   96 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBE
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEe
Confidence            66779999999999999999999999999999999999999999999988888888777777888999999999999999


Q ss_pred             ccccHHHHHHhhcCCcceeeEEEcCceEEEe---------CCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCC
Q 019351           81 IANGALVRVLIHTDVTKYLYFKAVDGSFVYN---------KGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDE  151 (342)
Q Consensus        81 ~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~---------~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~  151 (342)
                      ++.++++++|.++++.+|++|+..+..|.+.         +|+++.+|.+..+.|++.++++.+|+.+++|+.++.++..
T Consensus        97 ~~~g~L~~lL~~~gv~~ylef~~~~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~~lLs~~eK~~l~kFL~~l~~~~~  176 (475)
T 3p1w_A           97 LVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLTSEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDA  176 (475)
T ss_dssp             ETTSHHHHHHHHTTCGGGSCEEECSEEEEEEEECCCSSSCCEEEEECCCSHHHHHTCTTSCHHHHHHHHHHHHHHHHCCT
T ss_pred             ecCcHHHHHHHHCCchheeEEEecCcceEEecCccccccCCCceEeCCCCHHHHhhccCCCHHHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999998885         5789999998899999999999999999999999988765


Q ss_pred             CCcccccccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCC
Q 019351          152 NDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGL  231 (342)
Q Consensus       152 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~  231 (342)
                      ..+..+..++....|+.+|++++++++.+++++.+.+++.....+...|+...+.++..|..+++.| |.+++.||+||+
T Consensus       177 ~~~~~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~~~~~~~~~~a~~~l~ri~~y~~Sl~~y-g~s~~~yp~gG~  255 (475)
T 3p1w_A          177 NKRNTWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAF-GKSPFIYPLYGL  255 (475)
T ss_dssp             TCGGGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH-SSCSEEEETTCT
T ss_pred             ccchhhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcccCCHHHHHHHHHHHHHHHhhc-CCCceEEECCCH
Confidence            4444444445578999999999999999999887777776655555567888888888998888888 889999999999


Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC---CccccccceeEEEEEEecC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL---PNKVRKVGRVARAIAIMSH  307 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~---~~~~~~~~~~~~~~~i~~~  307 (342)
                      ++++++|++.+++.|++|+++++|++|..++++++++|++ +|++++||+||++++|+   |..++....+.|+++|+++
T Consensus       256 ~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~~~~~~p~~~~~~~~v~R~i~I~~~  335 (475)
T 3p1w_A          256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMHLKNKIKKIGQVIRCICILSN  335 (475)
T ss_dssp             THHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGGGCTTSTTSEEEEEEEEEEEEEESS
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCCccccCcccccccceEEEEEEEEec
Confidence            9999999999999999999999999999833788889988 56789999999999999   8766556689999999999


Q ss_pred             CCCCCCCCCeEEEEecCCCCCCcCceEEee
Q 019351          308 PIPNTNDSHSVQVILPQKQLGRRSDIQKPN  337 (342)
Q Consensus       308 ~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~  337 (342)
                      |+..+++..++.+++|+.+.+|+++||+.-
T Consensus       336 pi~~~~~~~~~~i~~P~~~~~~~~~iy~~~  365 (475)
T 3p1w_A          336 PIPETNQTNSCQIIIPQNQLNRKSDIYINL  365 (475)
T ss_dssp             CCTTSTTCSSEEEEECGGGGTSSSCEEEEE
T ss_pred             cCcccCCCceEEEEeCCcccCCCCCEEEEE
Confidence            999887777888999999999999999754

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=100.00  E-value=2.4e-39  Score=301.75  Aligned_cols=339  Identities=55%  Similarity=0.973  Sum_probs=266.3

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCC----CCCCCCCCCcceeccC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ----PPAHLGSSRDYNVDMI   76 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~----~~~~~g~~~~~~~~~~   76 (342)
                      |+.++||||||||++||+||++|+++|++|+|+|+++++||++++++.++.+..|.....    .+..++....|.++++
T Consensus         8 ~~~~~dvvVIGaG~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~   87 (453)
T 2bcg_G            8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI   87 (453)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred             ccccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceeccchhceeccCCccccCcchhcccccceeeccc
Confidence            445799999999999999999999999999999999999999999987763222221000    0001234467888999


Q ss_pred             cchhccccHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccc
Q 019351           77 PKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKT  156 (342)
Q Consensus        77 ~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~  156 (342)
                      |++++..+.+.+++.+.++.++++|...+..+.+.+|+.+.+|.+..+.+.+.+.++++++.+.+|+..+..+....|..
T Consensus        88 P~~l~~~~~l~~ll~~lg~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~  167 (453)
T 2bcg_G           88 PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLST  167 (453)
T ss_dssp             CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEEECCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCBTTBGGG
T ss_pred             cceeecCcHHHHHHHhcCCccceEEEEccceeEEeCCeEEECCCChHHHHhhhccchhhHHHHHHHHHHHHHhccCCchh
Confidence            99999999999999999998899999988888888999999997668889998988888888999998887755332322


Q ss_pred             ccccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHH
Q 019351          157 HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ  236 (342)
Q Consensus       157 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~  236 (342)
                      +...+....|+.+|++++++++.+++++...+.+.....+...|....+.++..+..++..+ +..+|.+|+||++.+++
T Consensus       168 ~~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~l~~~~~~~~~p~~~~~~~~~~~~~s~~~~-~~~~~~~p~gG~~~l~~  246 (453)
T 2bcg_G          168 HQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ  246 (453)
T ss_dssp             STTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH-SSCSEEEETTCTTHHHH
T ss_pred             hhccccccCCHHHHHHHhCCCHHHHHHHHHHHHhccCccccCCchHHHHHHHHHHHHHHHhh-cCCceEeeCCCHHHHHH
Confidence            22223467899999999999999998876655544333454457666666666676666666 56788899999999999


Q ss_pred             HHHHHHHHcCcEEEcCCccceEEEcC-CCcEEEEEeCCcEEEcCEEEECCCCCCccccccc-eeEEEEEEecCCCCCCCC
Q 019351          237 AFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVG-RVARAIAIMSHPIPNTND  314 (342)
Q Consensus       237 ~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~~~~-~~~~~~~i~~~~l~~~~~  314 (342)
                      +|++.+++.|++|+++++|++|..++ ++++++|+++|+++.||+||+|+++++..+.... ...+.++++++|++.+++
T Consensus       247 al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~~g~~~~ad~VV~a~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~  326 (453)
T 2bcg_G          247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKSTGQRVIRAICILNHPVPNTSN  326 (453)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCGGGEEEEEEEEEEEEEEESSCCTTSTT
T ss_pred             HHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEECCeEEECCEEEECCCccchhhcccCCcceeEEEEEccccCCCCC
Confidence            99999999999999999999998752 4667788888889999999999999987654444 567788888888875433


Q ss_pred             CCeEEEEecCCCCCCcCceEEeeCcc
Q 019351          315 SHSVQVILPQKQLGRRSDIQKPNGSF  340 (342)
Q Consensus       315 ~~~~~~~~p~~~~~~~~~~~~~~~~~  340 (342)
                      ......++|.++.++++.+|++.+|.
T Consensus       327 ~~~~~ii~~~~~~~~~~~~~v~~~s~  352 (453)
T 2bcg_G          327 ADSLQIIIPQSQLGRKSDIYVAIVSD  352 (453)
T ss_dssp             CSSEEEEECGGGTTCSSCEEEEEEEG
T ss_pred             CccEEEEeCccccCCCCCEEEEEeCC
Confidence            33456788988888889999987764

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=100.00  E-value=3.2e-38  Score=292.44  Aligned_cols=337  Identities=63%  Similarity=1.084  Sum_probs=266.9

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccc-hHHHHHhccCCCCCCCCCCCCCcceeccCcch
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   79 (342)
                      |+.++||+|||||++||++|++|+++|++|+|+|+++++||+++|++ ..+....|..+..++..++.+..|.++++|++
T Consensus         3 ~~~~~~v~iiG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~   82 (433)
T 1d5t_A            3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKF   82 (433)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCB
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcce
Confidence            77789999999999999999999999999999999999999999998 43211122211112334555577999999999


Q ss_pred             hccccHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccc
Q 019351           80 IIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (342)
Q Consensus        80 ~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
                      ++..+.+.+++.+.++.++++|...+..+.+.+|+.+.+|.+..+.+.+.+.++++++.+.+|+..+..+....|..+..
T Consensus        83 l~~~~~l~~ll~~lgl~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  162 (433)
T 1d5t_A           83 LMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEG  162 (433)
T ss_dssp             EETTSHHHHHHHHHTGGGGCCEEECCEEEEEETTEEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHHCCTTCGGGGTT
T ss_pred             eeccchHHHHHHHcCCccceEEEEeCceEEeeCCEEEECCCCHHHHhhCcccChhhHHHHHHHHHHHHhhcccCchhccc
Confidence            99988888989888998889998888888888999999997656888888888888888999999887765433333333


Q ss_pred             cCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHHH
Q 019351          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA  239 (342)
Q Consensus       160 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~  239 (342)
                      .+....|+.+|+++++.++.+++++...+++.....+...|+...+.++..|..+++.+ |.+++++|+||++.++++|+
T Consensus       163 ~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~s~~~~-g~~~~~~p~gG~~~l~~~l~  241 (433)
T 1d5t_A          163 VDPQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA  241 (433)
T ss_dssp             CCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBSHHHHHHHHHHHHSCCSS-SCCSEEEETTCTTHHHHHHH
T ss_pred             cccccCCHHHHHHHcCCCHHHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHhc-CCCcEEEeCcCHHHHHHHHH
Confidence            34568999999999999999988876655554434444556666666666666665555 56789999999999999999


Q ss_pred             HHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccccccceeEEEEEEecCCCCCCCCCCeEE
Q 019351          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQ  319 (342)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~  319 (342)
                      +.+++.|++|+++++|++|..+ ++++++|+++|+++.||+||+|+++++..+.......+++++++++++.+++.....
T Consensus       242 ~~~~~~G~~i~~~~~V~~I~~~-~~~v~~v~~~g~~~~ad~VV~a~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~  320 (433)
T 1d5t_A          242 RLSAIYGGTYMLNKPVDDIIME-NGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRIICILSHPIKNTNDANSCQ  320 (433)
T ss_dssp             HHHHHHTCCCBCSCCCCEEEEE-TTEEEEEEETTEEEECSEEEECGGGCGGGEEEEEEEEEEEEEESSCCTTSTTCSSEE
T ss_pred             HHHHHcCCEEECCCEEEEEEEe-CCEEEEEEECCeEEECCEEEECCCCCcccccccCcceeEEEEEcCcccccCCCceEE
Confidence            9999999999999999999987 778888888999999999999999998655433456667788888887543333566


Q ss_pred             EEecCCCCCCcCceEEeeCc
Q 019351          320 VILPQKQLGRRSDIQKPNGS  339 (342)
Q Consensus       320 ~~~p~~~~~~~~~~~~~~~~  339 (342)
                      .++|..+..+++.+|++..|
T Consensus       321 i~~~~~~~~~~~~~~v~~~s  340 (433)
T 1d5t_A          321 IIIPQNQVNRKSDIYVCMIS  340 (433)
T ss_dssp             EEECGGGTTCSSCEEEEEEE
T ss_pred             EEeCccccCCCCCEEEEEEC
Confidence            78888888888999998766

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=100.00  E-value=2.6e-38  Score=299.59  Aligned_cols=330  Identities=28%  Similarity=0.553  Sum_probs=269.6

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHH---hccCC-------------------
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWK---RFRGN-------------------   58 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~---~~~~~-------------------   58 (342)
                      |+.+|||+|||+|+.|.+.|..|++.|++|+++|+++++||.+.++.+.++..   .+...                   
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~~g~~vl~id~~~~~gg~~~~~~l~~l~~w~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEE   84 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEE
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHhCCCEEEEEcCCCcccCccccccHHHHHHHHHHhhccccccccccchhhhhhcchh
Confidence            44579999999999999999999999999999999999999999999888765   23210                   


Q ss_pred             -------------------------------------------C--------------------------C---------
Q 019351           59 -------------------------------------------E--------------------------Q---------   60 (342)
Q Consensus        59 -------------------------------------------~--------------------------~---------   60 (342)
                                                                 .                          .         
T Consensus        85 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (650)
T 1vg0_A           85 AIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCP  164 (650)
T ss_dssp             EEEBCSSCCCEEEEEEEECSCC----------------------------------------------------------
T ss_pred             hccccccccccccceeEeecccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence                                                       0                          0         


Q ss_pred             -----------------------------------------CCCC--------CCCCCcceeccCcchhccccHHHHHHh
Q 019351           61 -----------------------------------------PPAH--------LGSSRDYNVDMIPKFIIANGALVRVLI   91 (342)
Q Consensus        61 -----------------------------------------~~~~--------~g~~~~~~~~~~~~~~~~~~~l~~~l~   91 (342)
                                                               .|..        ++.++.|++|++|+++++.+.++++|.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~i~~~~R~f~~DL~PklL~~~g~lv~LL~  244 (650)
T 1vg0_A          165 GPESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLI  244 (650)
T ss_dssp             ----------------------------------------------CCCHHHHHHTGGGCCEESSCCCEESSSHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccCCCeEEeeCCeeeeCCcHHHHHHH
Confidence                                                     0000        235689999999999999999999999


Q ss_pred             hcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccCCCCCcHHHHH
Q 019351           92 HTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELI  171 (342)
Q Consensus        92 ~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l  171 (342)
                      ++++.+|++|+.++..|.+.+|.++.+|.+..+.|.+..+++.+|+.+++|+.++..+.. .+.  .+..++..|+.+|+
T Consensus       245 ~sgV~~yLEFk~v~~~y~~~~G~~~~VPas~~eif~s~~Lsl~EKr~L~kFl~~~~~~~~-~p~--~~~~~d~~S~~d~L  321 (650)
T 1vg0_A          245 KSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HPD--EYRAYEGTTFSEYL  321 (650)
T ss_dssp             HHTGGGGCCEEECCEEEEESSSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGG-CHH--HHHTTTTSBHHHHH
T ss_pred             HcCCcceeeEEEccceEEecCCCEeECCCCHHHHHhCcCCCHHHHHHHHHHHHHHHHhcc-ChH--HHhhhccCCHHHHH
Confidence            999999999999999999989999999999999999999999999999999999887553 221  12245789999999


Q ss_pred             HHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEc
Q 019351          172 AKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYML  251 (342)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~  251 (342)
                      +++++++.+++++.+.+++....   ..|...++.++..|..+++.| |.++++|++||++.++++|++.++..|++|++
T Consensus       322 ~~~~ls~~L~~~L~~~lal~~~~---~~pa~~~l~~i~~~l~sl~~y-g~sg~~yp~GG~g~L~qaL~r~~~~~Gg~i~l  397 (650)
T 1vg0_A          322 KTQKLTPNLQYFVLHSIAMTSET---TSCTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCL  397 (650)
T ss_dssp             TTSSSCHHHHHHHHHHTTC--CC---SCBHHHHHHHHHHHHHHTTSS-SSSSEEEETTCTTHHHHHHHHHHHHTTCEEES
T ss_pred             HHhCCCHHHHHHHHHHHhccCCC---CCchhHHHHHHHHHHHHHHhh-ccCceEEeCCchhHHHHHHHHHHHHcCCEEEe
Confidence            99999999998887666554321   236666666777888888777 66799999999999999999999999999999


Q ss_pred             CCccceEEEcCC--CcEEEEEe-CCcEEEcCEEEECCCCCCccccc---cceeEEEEEEecCCCCCCCCC-CeEEEEecC
Q 019351          252 NKPECKVEFDEE--GKVVGVTS-EGETAKCKKVVCDPSYLPNKVRK---VGRVARAIAIMSHPIPNTNDS-HSVQVILPQ  324 (342)
Q Consensus       252 ~~~V~~i~~~~~--~~~~~v~~-~g~~~~a~~vI~~~~~~~~~~~~---~~~~~~~~~i~~~~l~~~~~~-~~~~~~~p~  324 (342)
                      +++|.+|..+ +  +++++|+. +|+++.||+||+++.+.|.....   ...+.|.++++++|+.++... +....++|+
T Consensus       398 ~~~V~~I~~~-~~~g~v~gV~~~~Ge~i~A~~VVs~~~~lp~~~~~~~~~~~v~R~i~i~~~pi~~~~~~~~~~~iiiP~  476 (650)
T 1vg0_A          398 RHSVQCLVVD-KESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDGSVLRTDADQQVSILTVPA  476 (650)
T ss_dssp             SCCEEEEEEE-TTTCCEEEEEETTSCEEECSEEEEEGGGBCTTTTTTCCCEEEEEEEEEESSCSSCCSCCCCCEEEEECC
T ss_pred             CCEeeEEEEe-CCCCeEEEEEeCCCCEEEcCEEEEChhhcCHhHhccccccceEEEEEEecCCCCCcCCCcceEEEEccC
Confidence            9999999887 5  78888885 68899999999988887755432   356889999999998876443 345577888


Q ss_pred             CCCCCcCceEEeeCc
Q 019351          325 KQLGRRSDIQKPNGS  339 (342)
Q Consensus       325 ~~~~~~~~~~~~~~~  339 (342)
                      .+ ++++.||+...|
T Consensus       477 ~~-g~~~~V~i~~~S  490 (650)
T 1vg0_A          477 EE-PGSFAVRVIELC  490 (650)
T ss_dssp             SS-TTSCCEEEEEEC
T ss_pred             cc-CCCCCEEEEEeC
Confidence            87 678899985544

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.94  E-value=3.7e-26  Score=215.80  Aligned_cols=251  Identities=18%  Similarity=0.239  Sum_probs=148.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccccH
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA   85 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   85 (342)
                      +|||||||++||+||++|+++|++|+|||+++++||+++|++.++                    |.+|.+++++.....
T Consensus         3 ~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~~~G--------------------~~~D~G~~~~~~~~~   62 (501)
T 4dgk_A            3 PTTVIGAGFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYEDQG--------------------FTFDAGPTVITDPSA   62 (501)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEECCC-------CEEEETT--------------------EEEECSCCCBSCTHH
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEEeCC--------------------EEEecCceeecCchh
Confidence            699999999999999999999999999999999999999987642                    677777777655443


Q ss_pred             HHHHHhhc--CCcceeeEEEcCceEEE--eCCeEEecCCCcHHHhcCCCCCh--hhHHHHHHHHHHHhhcCCCCcccc--
Q 019351           86 LVRVLIHT--DVTKYLYFKAVDGSFVY--NKGKVHKVPATDMEALKSPLMGI--FEKRRARKFFIYVQDYDENDPKTH--  157 (342)
Q Consensus        86 l~~~l~~~--~~~~~l~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~--~~k~~~~~~~~~~~~~~~~~~~~~--  157 (342)
                      +.+++...  .+.+++++...+..+.+  .+|..+.++.. .+.+...+..+  .+...+.+|++.++..........  
T Consensus        63 ~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (501)
T 4dgk_A           63 IEELFALAGKQLKEYVELLPVTPFYRLCWESGKVFNYDND-QTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGT  141 (501)
T ss_dssp             HHHHHHTTTCCGGGTCCEEEESSSEEEEETTSCEEEECSC-HHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CC
T ss_pred             HHHHHHHhcchhhhceeeEecCcceEEEcCCCCEEEeecc-HHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhccc
Confidence            33333332  35566777777665533  47877777753 33332211111  123345556655544221100000  


Q ss_pred             -------ccc----CCC----CCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCC
Q 019351          158 -------EGM----DLT----RVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGS  222 (342)
Q Consensus       158 -------~~~----~~~----~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  222 (342)
                             ...    .+.    ..++.+++.++.-++.++..+............ ..+....+   ..+   .   ....
T Consensus       142 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~g~~p~-~~~~~~~~---~~~---~---~~~~  211 (501)
T 4dgk_A          142 VPFLSFRDMLRAAPQLAKLQAWRSVYSKVASYIEDEHLRQAFSFHSLLVGGNPF-ATSSIYTL---IHA---L---EREW  211 (501)
T ss_dssp             CCCCCHHHHHHSGGGTTTSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHSCC---CCCTHHH---HHH---H---HSCC
T ss_pred             cccchhhhhhhhhhhhhhhhhcccHHHHHHHHhccHHHHhhhhhhhcccCCCcc-hhhhhhhh---hhh---h---hccC
Confidence                   000    000    124455566553444444443221111111111 11111111   011   1   0123


Q ss_pred             ceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC
Q 019351          223 PYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (342)
Q Consensus       223 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~  288 (342)
                      ..++|+||++.++++|++.++++|++|+++++|++|..+ ++++++|++ +|+++.||.||+++++.
T Consensus       212 G~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~~~g~~~~ad~VV~~a~~~  277 (501)
T 4dgk_A          212 GVWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETT-GNKIEAVHLEDGRRFLTQAVASNADVV  277 (501)
T ss_dssp             CEEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSCEEECCC--
T ss_pred             CeEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEee-CCeEEEEEecCCcEEEcCEEEECCCHH
Confidence            356899999999999999999999999999999999988 888898887 78899999999988654

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.91  E-value=1.2e-22  Score=187.82  Aligned_cols=237  Identities=15%  Similarity=0.188  Sum_probs=148.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc--
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA--   82 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--   82 (342)
                      +||+|||||++||+||++|+++|++|+|||+++++||+++++...+                    +.++.++..+..  
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~G--------------------~~~d~G~~~~~~~~   60 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKG--------------------FQLSSGAFHMLPNG   60 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEEETT--------------------EEEESSSCSCBTTG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeeccCC--------------------cEEcCCCceEecCC
Confidence            4899999999999999999999999999999999999999876532                    555555433321  


Q ss_pred             -ccHHHHHHhhcCCcceeeEEEcCceEEEeC-----------CeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcC
Q 019351           83 -NGALVRVLIHTDVTKYLYFKAVDGSFVYNK-----------GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYD  150 (342)
Q Consensus        83 -~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  150 (342)
                       ...+.+++.+.+....+.  ..+......+           +..+.++.     +. ..++..++..+...+..... .
T Consensus        61 ~~~~~~~l~~~lg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~~~~~~~~~~~~~~-~  131 (425)
T 3ka7_A           61 PGGPLACFLKEVEASVNIV--RSEMTTVRVPLKKGNPDYVKGFKDISFND-----FP-SLLSYKDRMKIALLIVSTRK-N  131 (425)
T ss_dssp             GGSHHHHHHHHTTCCCCEE--ECCCCEEEEESSTTCCSSTTCEEEEEGGG-----GG-GGSCHHHHHHHHHHHHHTTT-S
T ss_pred             CccHHHHHHHHhCCCceEE--ecCCceEEeecCCCcccccccccceehhh-----hh-hhCCHHHHHHHHHHHHhhhh-c
Confidence             224555565555543322  1212222211           33343321     11 12233333222222211110 0


Q ss_pred             CCCcccccccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCC
Q 019351          151 ENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG  230 (342)
Q Consensus       151 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG  230 (342)
                                ..+..++.+|++++.-++....++...............+....+..+..+.    .. +  ...++.+|
T Consensus       132 ----------~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~----~~-~--~~~~~~gG  194 (425)
T 3ka7_A          132 ----------RPSGSSLQAWIKSQVSDEWLIKFADSFCGWALSLKSDEVPVEEVFEIIENMY----RF-G--GTGIPEGG  194 (425)
T ss_dssp             ----------CCCSSBHHHHHHHHCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHH----HH-C--SCEEETTS
T ss_pred             ----------CCCCCCHHHHHHHhcCCHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHH----hc-C--CccccCCC
Confidence                      1146899999998844443444444433221112222233333333333221    11 1  23589999


Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~  288 (342)
                      +..++++|++.++++|++|+++++|++|..+ ++++++|+++|+++.||+||+|++.+
T Consensus       195 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~~g~~~~ad~VV~a~~~~  251 (425)
T 3ka7_A          195 CKGIIDALETVISANGGKIHTGQEVSKILIE-NGKAAGIIADDRIHDADLVISNLGHA  251 (425)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTEEEECSEEEECSCHH
T ss_pred             HHHHHHHHHHHHHHcCCEEEECCceeEEEEE-CCEEEEEEECCEEEECCEEEECCCHH
Confidence            9999999999999999999999999999987 77888788888899999999999854

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.90  E-value=1.4e-22  Score=187.21  Aligned_cols=236  Identities=14%  Similarity=0.199  Sum_probs=150.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc---
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA---   82 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---   82 (342)
                      ||+|||||++||+||++|+++|++|+|||+++++||++.+....                    .+.++.++..+..   
T Consensus         2 dVvVIGaGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~~~--------------------g~~~d~G~~~~~~~~~   61 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLPYK--------------------GFQLSTGALHMIPHGE   61 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEEET--------------------TEEEESSSCSEETTTT
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEeccC--------------------CEEEecCCeEEEccCC
Confidence            89999999999999999999999999999999999999988653                    2566666544332   


Q ss_pred             ccHHHHHHhhcCCcceeeEEEcCc-eEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccC
Q 019351           83 NGALVRVLIHTDVTKYLYFKAVDG-SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD  161 (342)
Q Consensus        83 ~~~l~~~l~~~~~~~~l~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
                      ...+.+++.+.++..  ++...+. ...+.+|..+.++.. ...     ++..++..+.++.......         ..+
T Consensus        62 ~~~~~~l~~~lg~~~--~~~~~~~~~~~~~~g~~~~~~~~-~~~-----l~~~~~~~~~~~~~~~~~~---------~~~  124 (421)
T 3nrn_A           62 DGPLAHLLRILGAKV--EIVNSNPKGKILWEGKIFHYRES-WKF-----LSVKEKAKALKLLAEIRMN---------KLP  124 (421)
T ss_dssp             SSHHHHHHHHHTCCC--CEEECSSSCEEEETTEEEEGGGG-GGG-----CC--------CCHHHHHTT---------CCC
T ss_pred             ChHHHHHHHHhCCcc--eEEECCCCeEEEECCEEEEcCCc-hhh-----CCHhHHHHHHHHHHHHHhc---------cCC
Confidence            224455555554432  2233332 233447877776632 111     1112222222222222210         111


Q ss_pred             CCCCcHHHHHHHcCCChhHH-HHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHHHH
Q 019351          162 LTRVTTRELIAKYGLDDNTI-DFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFAR  240 (342)
Q Consensus       162 ~~~~s~~~~l~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~  240 (342)
                      .+..++.+|+++++++++.. .++.+.............+....+..+..+..    +   ..+.++++|+..++++|++
T Consensus       125 ~~~~s~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~g~~~~~gG~~~l~~~l~~  197 (421)
T 3nrn_A          125 KEEIPADEWIKEKIGENEFLLSVLESFAGWADSVSLSDLTALELAKEIRAALR----W---GGPGLIRGGCKAVIDELER  197 (421)
T ss_dssp             CCCSBHHHHHHHHTCCCHHHHHHHHHHHHHHHSSCGGGSBHHHHHHHHHHHHH----H---CSCEEETTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCcccCCHHHHHHHHHHHhh----c---CCcceecCCHHHHHHHHHH
Confidence            24589999999886665543 34444332211222222344444444333211    1   1246899999999999999


Q ss_pred             HHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC
Q 019351          241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (342)
Q Consensus       241 ~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~  288 (342)
                      .++++|++|+++++|++|..+ ++++  |+++|+++.||+||+|++.+
T Consensus       198 ~~~~~G~~i~~~~~V~~i~~~-~~~v--V~~~g~~~~ad~Vv~a~~~~  242 (421)
T 3nrn_A          198 IIMENKGKILTRKEVVEINIE-EKKV--YTRDNEEYSFDVAISNVGVR  242 (421)
T ss_dssp             HHHTTTCEEESSCCEEEEETT-TTEE--EETTCCEEECSEEEECSCHH
T ss_pred             HHHHCCCEEEcCCeEEEEEEE-CCEE--EEeCCcEEEeCEEEECCCHH
Confidence            999999999999999999876 6665  77788899999999999864

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.90  E-value=5.5e-23  Score=193.79  Aligned_cols=254  Identities=18%  Similarity=0.131  Sum_probs=155.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc-c
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA-N   83 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~   83 (342)
                      +||+|||||++||+||++|+++|++|+|||+++++||+++|.+..                    .+.+|++++++.. .
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~~~--------------------g~~~d~G~~~~~~~~   99 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSNID--------------------GYPYEMGGTWVHWHQ   99 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEEET--------------------TEEEECSCCCBCTTS
T ss_pred             CCEEEECCcHHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecccC--------------------CeeecCCCeEecCcc
Confidence            899999999999999999999999999999999999999998653                    2556666666543 3


Q ss_pred             cHHHHHHhhcCCcceeeEEE----cCceEEEeC--CeEEecCCCcHHHhcCCCCChhhHHHHHHHHH----HHhhcCCCC
Q 019351           84 GALVRVLIHTDVTKYLYFKA----VDGSFVYNK--GKVHKVPATDMEALKSPLMGIFEKRRARKFFI----YVQDYDEND  153 (342)
Q Consensus        84 ~~l~~~l~~~~~~~~l~~~~----~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~----~~~~~~~~~  153 (342)
                      ..+.+++.+.++...+....    ....+.+.+  +....++..+...       .+. ..+.+|..    .........
T Consensus       100 ~~~~~~l~~lgl~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~  171 (495)
T 2vvm_A          100 SHVWREITRYKMHNALSPSFNFSRGVNHFQLRTNPTTSTYMTHEAEDE-------LLR-SALHKFTNVDGTNGRTVLPFP  171 (495)
T ss_dssp             HHHHHHHHHTTCTTCEEESCCCSSSCCEEEEESSTTCCEEECHHHHHH-------HHH-HHHHHHHCSSSSTTTTTCSCT
T ss_pred             HHHHHHHHHcCCcceeecccccCCCceEEEecCCCCceeecCHHHHHH-------HHH-HHHHHHHccchhhhhhcCCCC
Confidence            35666676666654433221    122344444  5555555311100       001 11112222    000000000


Q ss_pred             ccc---ccccCCCCCcHHHHHHHcC--CChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeC
Q 019351          154 PKT---HEGMDLTRVTTRELIAKYG--LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPL  228 (342)
Q Consensus       154 ~~~---~~~~~~~~~s~~~~l~~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~  228 (342)
                      ...   .....++..|+.+|+++.+  +++..+.++.+++...........+....+..+......+..+......++++
T Consensus       172 ~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (495)
T 2vvm_A          172 HDMFYVPEFRKYDEMSYSERIDQIRDELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMSGYTYQGCMDCLMSYKFK  251 (495)
T ss_dssp             TSTTSSTTHHHHHTSBHHHHHHHHGGGCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSSHHHHHHHHHSEEET
T ss_pred             CCcccCcchhhhhhhhHHHHHHHhhccCCHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHcCCCHHHHHhhhceEEeC
Confidence            000   0001235789999999887  78877766665554332222223333333322211100000000112345789


Q ss_pred             CCCChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC
Q 019351          229 YGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (342)
Q Consensus       229 gG~~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~  288 (342)
                      +|+..+++.|++.+...| ++|+++++|++|+.+ ++++. |++ +|++++||+||+|++..
T Consensus       252 gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~vI~a~~~~  311 (495)
T 2vvm_A          252 DGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNE-RDAAR-VTARDGREFVAKRVVCTIPLN  311 (495)
T ss_dssp             TCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEEC-SSSEE-EEETTCCEEEEEEEEECCCGG
T ss_pred             CCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEc-CCEEE-EEECCCCEEEcCEEEECCCHH
Confidence            999999999999999988 999999999999987 55544 555 66689999999999853

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.89  E-value=2.5e-22  Score=188.44  Aligned_cols=252  Identities=14%  Similarity=0.100  Sum_probs=156.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   82 (342)
                      +||+|||||++||+||++|+++|+  +|+|||+++++||++++....                   ..+.++.+++.+..
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~-------------------~g~~~d~G~~~~~~   63 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGP-------------------NGAIFELGPRGIRP   63 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECT-------------------TSCEEESSCCCBCC
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEecc-------------------CCeEEEeCCCcccC
Confidence            599999999999999999999999  999999999999999987532                   23667777776654


Q ss_pred             c----cHHHHHHhhcCCcceeeEEEc-----CceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCC
Q 019351           83 N----GALVRVLIHTDVTKYLYFKAV-----DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEND  153 (342)
Q Consensus        83 ~----~~l~~~l~~~~~~~~l~~~~~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~  153 (342)
                      .    ..+.+++.+.++...+.....     ...+++.+|..+.+|......+.. . ..+.+...   ...+.......
T Consensus        64 ~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~-~-~~~~~~~~---~~~~~~~~~~~  138 (477)
T 3nks_A           64 AGALGARTLLLVSELGLDSEVLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRP-S-PPFSKPLF---WAGLRELTKPR  138 (477)
T ss_dssp             CHHHHHHHHHHHHHTTCGGGEEEECTTSHHHHCEEEEETTEEEECCCSSCC---C-C-TTSCSCSS---HHHHTTTTSCC
T ss_pred             CCcccHHHHHHHHHcCCcceeeecCCCCchhcceEEEECCEEEECCCChhhcccc-c-chhhhHHH---HHHHHhhhcCC
Confidence            3    234566666666654332211     124667799998888642222111 0 00110000   11122211110


Q ss_pred             cccccccCCCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccc--------------
Q 019351          154 PKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIARF--------------  218 (342)
Q Consensus       154 ~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  218 (342)
                            ...+..++.+|+++. +...+.+ ++.+.+......+....+....+..+.......+..              
T Consensus       139 ------~~~~~~s~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~~~~~~~  211 (477)
T 3nks_A          139 ------GKEPDETVHSFAQRR-LGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTPQP  211 (477)
T ss_dssp             ------CCSSCCBHHHHHHHH-HCHHHHHHTHHHHHHHHHSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC-----CC
T ss_pred             ------CCCCCcCHHHHHHHh-hCHHHHHHHHHHHhcccccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhcccccCC
Confidence                  012568999999875 4444443 333332211112222223333333222211111100              


Q ss_pred             ---------cCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC
Q 019351          219 ---------QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (342)
Q Consensus       219 ---------~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~  288 (342)
                               .....++++++|++.++++|++.+++.|++|+++++|++|..+ +++.+.|+++++++.||+||+|++.+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~i~~~-~~~~~~v~~~~~~~~ad~vv~a~p~~  289 (477)
T 3nks_A          212 DSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVCGLSLQ-AEGRWKVSLRDSSLEADHVISAIPAS  289 (477)
T ss_dssp             CCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEC-GGGCEEEECSSCEEEESEEEECSCHH
T ss_pred             chhhhhhhcccCccEEEECCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEEc-CCceEEEEECCeEEEcCEEEECCCHH
Confidence                     0123578899999999999999999999999999999999987 55546677788899999999998753

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.89  E-value=1.1e-21  Score=186.11  Aligned_cols=254  Identities=18%  Similarity=0.220  Sum_probs=153.0

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchh
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (342)
                      |+.++||+|||||++||+||++|+++|++|+|||+++++||+++|.+..                   ..+.+|++++++
T Consensus         1 m~~~~~vvIIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~-------------------~g~~~d~G~~~~   61 (520)
T 1s3e_A            1 MSNKCDVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQ-------------------KVKYVDLGGSYV   61 (520)
T ss_dssp             --CBCSEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCT-------------------TTSCEESSCCEE
T ss_pred             CCCCceEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccC-------------------CCcccccCceEe
Confidence            7777899999999999999999999999999999999999999988642                   024455555544


Q ss_pred             ccc-cHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCC----Ccc
Q 019351           81 IAN-GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN----DPK  155 (342)
Q Consensus        81 ~~~-~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~----~~~  155 (342)
                      ... ..+.+++.+.++..+..+. ......+.+|..+.++..    +.. ...........+++..+.+....    .+.
T Consensus        62 ~~~~~~~~~l~~~lgl~~~~~~~-~~~~~~~~~g~~~~~~~~----~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (520)
T 1s3e_A           62 GPTQNRILRLAKELGLETYKVNE-VERLIHHVKGKSYPFRGP----FPP-VWNPITYLDHNNFWRTMDDMGREIPSDAPW  135 (520)
T ss_dssp             CTTCHHHHHHHHHTTCCEEECCC-SSEEEEEETTEEEEECSS----SCC-CCSHHHHHHHHHHHHHHHHHHTTSCTTCGG
T ss_pred             cCCcHHHHHHHHHcCCcceeccc-CCceEEEECCEEEEecCC----CCC-CCCHHHHHHHHHHHHHHHHHHhhcCcCCCc
Confidence            432 3555666666665433111 122233446766654421    000 01111222233333333222111    110


Q ss_pred             ccc-ccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhcc----c--cCCCceEEeC
Q 019351          156 THE-GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIAR----F--QGGSPYIYPL  228 (342)
Q Consensus       156 ~~~-~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~g~~~~~~~~  228 (342)
                      ... ...++..|+.+|+++...++....++..........+....+....+..    ....+.    +  .....+.+++
T Consensus       136 ~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~  211 (520)
T 1s3e_A          136 KAPLAEEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWY----VKQCGGTTRIISTTNGGQERKFV  211 (520)
T ss_dssp             GSTTHHHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHH----HHTTTCHHHHHCSTTSTTSEEET
T ss_pred             cccchhhhhccCHHHHHHhhCCCHHHHHHHHHHHhhhcCCChHHhHHHHHHHH----HhhcCchhhhcccCCCcceEEEe
Confidence            000 0113578999999998888877766655432221122222233332222    111110    0  0234467899


Q ss_pred             CCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC
Q 019351          229 YGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (342)
Q Consensus       229 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~  288 (342)
                      +|++.++++|++..   |++|+++++|++|..+ ++++. |++ +|+++.||+||+|++..
T Consensus       212 gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~VI~a~p~~  267 (520)
T 1s3e_A          212 GGSGQVSERIMDLL---GDRVKLERPVIYIDQT-RENVL-VETLNHEMYEAKYVISAIPPT  267 (520)
T ss_dssp             TCTHHHHHHHHHHH---GGGEESSCCEEEEECS-SSSEE-EEETTSCEEEESEEEECSCGG
T ss_pred             CCHHHHHHHHHHHc---CCcEEcCCeeEEEEEC-CCeEE-EEECCCeEEEeCEEEECCCHH
Confidence            99999999998754   8899999999999877 66665 555 77799999999998753

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.89  E-value=1.1e-21  Score=184.03  Aligned_cols=248  Identities=13%  Similarity=0.112  Sum_probs=155.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIAN   83 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~   83 (342)
                      .+||+|||||++||+||+.|+++|++|+|||+++++||+++|.+..+                    +.+|.+++++...
T Consensus        16 ~~~v~iiG~G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~~g--------------------~~~~~g~~~~~~~   75 (478)
T 2ivd_A           16 GMNVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAG--------------------YLVEQGPNSFLDR   75 (478)
T ss_dssp             -CCEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETT--------------------EEEESSCCCEETT
T ss_pred             CCcEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeeccCC--------------------eeeecChhhhhhh
Confidence            58999999999999999999999999999999999999999987532                    5667776666553


Q ss_pred             -cHHHHHHhhcCCcceeeEEE--cCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccccccc
Q 019351           84 -GALVRVLIHTDVTKYLYFKA--VDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (342)
Q Consensus        84 -~~l~~~l~~~~~~~~l~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
                       ..+.+++.+.++...+.+..  ....+++.+|+.+.+|.+....+...+.++.++      ...+........     .
T Consensus        76 ~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~-----~  144 (478)
T 2ivd_A           76 EPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGAR------LRVAGELFSRRA-----P  144 (478)
T ss_dssp             CHHHHHHHHHTTCGGGEECSCSSCCCEEEEETTEEEECCCSHHHHHTCSSSCHHHH------HHHHGGGGCCCC-----C
T ss_pred             hHHHHHHHHHcCCcceeeecCccccceEEEECCEEEECCCCHHHhccCCCCCHHHH------HHHhhhhhcCCC-----C
Confidence             34556666677665443222  123456678888888865444444444443222      112222211110     1


Q ss_pred             CCCCCcHHHHHHHcCCChhHHH-HHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhcc------------------ccCC
Q 019351          161 DLTRVTTRELIAKYGLDDNTID-FIGHALALHRDDRYLNEPALDTVKRMKLYAESIAR------------------FQGG  221 (342)
Q Consensus       161 ~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~g~  221 (342)
                      ..+..|+.+|+++. +.+...+ ++.+.+......+....+....+..+..+....+.                  ....
T Consensus       145 ~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (478)
T 2ivd_A          145 EGVDESLAAFGRRH-LGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTA  223 (478)
T ss_dssp             TTCCCBHHHHHHHH-TCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCS
T ss_pred             CCCCCCHHHHHHHh-hCHHHHHHHHHHHhceeecCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccccCccccc
Confidence            23678999999886 5555443 33333322111222122222222222211110000                  0012


Q ss_pred             ----CceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE----eCCcEEEcCEEEECCCCC
Q 019351          222 ----SPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT----SEGETAKCKKVVCDPSYL  288 (342)
Q Consensus       222 ----~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~----~~g~~~~a~~vI~~~~~~  288 (342)
                          ..++++++|+..+++.|++.+   |++|+++++|++|..+ +++ +.|+    .+|+++.||+||+|++..
T Consensus       224 ~~~~~~~~~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~-~~~-~~v~~~~~~~g~~~~ad~vV~a~~~~  293 (478)
T 2ivd_A          224 PKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLARE-DGG-WRLIIEEHGRRAELSVAQVVLAAPAH  293 (478)
T ss_dssp             CCCCCCEEEETTCTHHHHHHHHHHH---GGGEESSEEEEEEECC---C-CEEEEEETTEEEEEECSEEEECSCHH
T ss_pred             ccccccEEEECCCHHHHHHHHHHHh---hhhEEcCCEEEEEEec-CCe-EEEEEeecCCCceEEcCEEEECCCHH
Confidence                567899999999999999866   7899999999999876 555 4455    367789999999998753

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.88  E-value=2.3e-22  Score=190.25  Aligned_cols=249  Identities=16%  Similarity=0.122  Sum_probs=142.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhC-CCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   82 (342)
                      .+||||||||++||+||++|+++ |++|+|||+++++||+++|....                   ..+.+|.+++.+..
T Consensus        10 ~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~-------------------~G~~~D~G~h~~~~   70 (513)
T 4gde_A           10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTP-------------------EGFLYDVGGHVIFS   70 (513)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECT-------------------TSCEEESSCCCCCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEec-------------------CCEEEEeCceEecC
Confidence            48999999999999999999984 99999999999999999986321                   23677888887766


Q ss_pred             ccH-HHHHHhhcCCcceeeEEE-cCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccccccc
Q 019351           83 NGA-LVRVLIHTDVTKYLYFKA-VDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGM  160 (342)
Q Consensus        83 ~~~-l~~~l~~~~~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
                      ..+ +.+++.+...... ++.. ....+++.+|+.+..|.+.  .+.. +...........++.........        
T Consensus        71 ~~~~v~~l~~e~~~~~~-~~~~~~~~~~i~~~g~~~~~p~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~--------  138 (513)
T 4gde_A           71 HYKYFDDCLDEALPKED-DWYTHQRISYVRCQGQWVPYPFQN--NISM-LPKEEQVKCIDGMIDAALEARVA--------  138 (513)
T ss_dssp             CBHHHHHHHHHHSCSGG-GEEEEECCEEEEETTEEEESSGGG--GGGG-SCHHHHHHHHHHHHHHHHHHHTC--------
T ss_pred             CCHHHHHHHHHhCCccc-eeEEecCceEEEECCeEeecchhh--hhhh-cchhhHHHHHHHHHHHHHhhhcc--------
Confidence            553 3444444332211 2222 2344667799998887421  1111 00000111111222211111100        


Q ss_pred             CCCCCcHHHHHHHcCCChhHHH-HHHhhh-hccc----------CCCCCCCchHHHHHHHHHHHHhhccccCCCceEEe-
Q 019351          161 DLTRVTTRELIAKYGLDDNTID-FIGHAL-ALHR----------DDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYP-  227 (342)
Q Consensus       161 ~~~~~s~~~~l~~~~~~~~~~~-~~~~~~-~l~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-  227 (342)
                      .....++.+|+.+. +.+.+.+ ++.+.. .++.          .......+.................+.....+.++ 
T Consensus       139 ~~~~~s~~~~~~~~-~g~~l~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (513)
T 4gde_A          139 NTKPKTFDEWIVRM-MGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFPA  217 (513)
T ss_dssp             CSCCCSHHHHHHHH-HHHHHHHHTHHHHHHHHHSSCGGGBCSGGGCSSCCCCCHHHHHHHHHHTCCCCSCBTTBEEEEES
T ss_pred             cccccCHHHHHHHh-hhhhhhhhhcchhhhhhccCChHHhhHHHHHHhhcccchhhhhhhhhhcccccccccccceeecc
Confidence            11356788887654 3333322 222211 1111          00111111111110100000001111013345555 


Q ss_pred             CCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351          228 LYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       228 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~  287 (342)
                      +||++.++++|++.+.+.|++|+++++|++|..+ +++  .+..+|.++.||+||+|++.
T Consensus       218 ~gG~~~l~~~l~~~l~~~g~~i~~~~~V~~I~~~-~~~--v~~~~G~~~~ad~vI~t~P~  274 (513)
T 4gde_A          218 RGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNAN-NKT--VTLQDGTTIGYKKLVSTMAV  274 (513)
T ss_dssp             SSHHHHHHHHHHHTSCGGGEEESGGGCEEEEETT-TTE--EEETTSCEEEEEEEEECSCH
T ss_pred             cCCHHHHHHHHHHHHHhcCeeeecceEEEEEEcc-CCE--EEEcCCCEEECCEEEECCCH
Confidence            7999999999999999999999999999999876 443  23458999999999999864

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.88  E-value=6.2e-22  Score=185.23  Aligned_cols=251  Identities=12%  Similarity=0.170  Sum_probs=144.0

Q ss_pred             CCC-cccEEEECCCchHHHHHHhhhhCC------CeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCccee
Q 019351            1 MDE-EYDVIVLGTGLKECILSGLLSVDG------LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV   73 (342)
Q Consensus         1 m~~-~~DViIiG~GiaGl~aA~~L~~~G------~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~   73 (342)
                      |+. ++||+|||||++||+||++|+++|      ++|+|||+++++||+++|....                    .+.+
T Consensus         1 M~~~~~dVvIIGaGiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~~~--------------------g~~~   60 (470)
T 3i6d_A            1 MSDGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKD--------------------GYII   60 (470)
T ss_dssp             ----CEEEEEECCSHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEECCT--------------------TCCE
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEeccC--------------------CEEe
Confidence            543 489999999999999999999999      9999999999999999987643                    2455


Q ss_pred             ccCcchhcc-ccHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCc--------HHHhcCCCCChhhHHHHHHHHH
Q 019351           74 DMIPKFIIA-NGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATD--------MEALKSPLMGIFEKRRARKFFI  144 (342)
Q Consensus        74 ~~~~~~~~~-~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~k~~~~~~~~  144 (342)
                      +.+++.+.. ...+.+++.+.++...+........+++.+|....+|...        ...+...+++..++  +.....
T Consensus        61 d~G~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~  138 (470)
T 3i6d_A           61 ERGPDSFLERKKSAPQLVKDLGLEHLLVNNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGK--ARAAMD  138 (470)
T ss_dssp             ESSCCCEETTCTHHHHHHHHTTCCTTEEECCCCCEEEECSSCEEECCC---------------------CCS--HHHHHH
T ss_pred             ccChhhhhhCCHHHHHHHHHcCCcceeecCCCCccEEEECCEEEECCCCcccCCcCchHHhhccCcCCHHHH--HHHhcC
Confidence            566544433 3355667777777665432223445666688877776432        11111111111111  111111


Q ss_pred             HHhhcCCCCcccccccCCCCCcHHHHHHHcCCChhHHH-HHHhhhh-cccCCCCCCCchHHHHHHHHHHHHhhcc-----
Q 019351          145 YVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALA-LHRDDRYLNEPALDTVKRMKLYAESIAR-----  217 (342)
Q Consensus       145 ~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----  217 (342)
                      ....   .      ....+..++.+|+++. +.....+ ++.+... ++. .+....+....+..+..+....+.     
T Consensus       139 ~~~~---~------~~~~~~~s~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  207 (470)
T 3i6d_A          139 FILP---A------SKTKDDQSLGEFFRRR-VGDEVVENLIEPLLSGIYA-GDIDKLSLMSTFPQFYQTEQKHRSLILGM  207 (470)
T ss_dssp             HHSC---C------CSSSSCCBHHHHHHHH-SCHHHHHHTHHHHHHHTTC-SCTTTBBHHHHCGGGCC------------
T ss_pred             cccC---C------CCCCCCcCHHHHHHHh-cCHHHHHHhccchhcEEec-CCHHHhhHHHHHHHHHHHHHhcCcHHHHH
Confidence            1110   0      0123578999999886 5554443 3333322 221 111111111111111000000000     


Q ss_pred             -------------ccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEE
Q 019351          218 -------------FQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVC  283 (342)
Q Consensus       218 -------------~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~  283 (342)
                                   ......+.++++|+..+++.|++.+..  ++|+++++|++|+.+ ++++ .|++ +|+++.||+||+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-~~~~-~v~~~~g~~~~ad~vi~  283 (470)
T 3i6d_A          208 KKTRPQGSGQQLTAKKQGQFQTLSTGLQTLVEEIEKQLKL--TKVYKGTKVTKLSHS-GSCY-SLELDNGVTLDADSVIV  283 (470)
T ss_dssp             -------------------EEEETTCTHHHHHHHHHTCCS--EEEECSCCEEEEEEC-SSSE-EEEESSSCEEEESEEEE
T ss_pred             HhhccccccccccccCCceEEEeCChHHHHHHHHHHhcCC--CEEEeCCceEEEEEc-CCeE-EEEECCCCEEECCEEEE
Confidence                         000236778999999999999986533  799999999999987 5554 4555 676899999999


Q ss_pred             CCCCC
Q 019351          284 DPSYL  288 (342)
Q Consensus       284 ~~~~~  288 (342)
                      |++..
T Consensus       284 a~p~~  288 (470)
T 3i6d_A          284 TAPHK  288 (470)
T ss_dssp             CSCHH
T ss_pred             CCCHH
Confidence            98743

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.87  E-value=2.1e-21  Score=182.01  Aligned_cols=253  Identities=12%  Similarity=0.172  Sum_probs=156.5

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCC--CeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPK   78 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~   78 (342)
                      |+ ++||+|||||++||+||++|+++|  ++|+|||+++++||++++....                    .+.++.+++
T Consensus         2 m~-~~~v~IiGaG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~~~--------------------g~~~~~g~~   60 (475)
T 3lov_A            2 MS-SKRLVIVGGGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYRED--------------------GFTIERGPD   60 (475)
T ss_dssp             CC-SCEEEEECCBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEECST--------------------TCCEESSCC
T ss_pred             CC-cccEEEECCCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEeeC--------------------CEEEecCch
Confidence            54 479999999999999999999999  9999999999999999988653                    244555655


Q ss_pred             hhcc-ccHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCc--------HHHhcCCCCChhhHHHHHHHHHHHhhc
Q 019351           79 FIIA-NGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATD--------MEALKSPLMGIFEKRRARKFFIYVQDY  149 (342)
Q Consensus        79 ~~~~-~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--------~~~~~~~~~~~~~k~~~~~~~~~~~~~  149 (342)
                      .+.. ...+.+++.+.++...+........+++.+|....+|...        ...+...+++...+.   .+.......
T Consensus        61 ~~~~~~~~~~~l~~~lg~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~---~~~~~~~~~  137 (475)
T 3lov_A           61 SYVARKHILTDLIEAIGLGEKLVRNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEEEKQ---EVADLLLHP  137 (475)
T ss_dssp             CEETTSTHHHHHHHHTTCGGGEEECCCCCEEEEETTEEEECCSSEETTEESCHHHHTTCSSSCHHHHH---HHHHHHHSC
T ss_pred             hhhcccHHHHHHHHHcCCcceEeecCCCceEEEECCEEEECCCcccccCcCchHHHhhccCCChhHHH---HhhCcccCC
Confidence            4433 2355666777777665443324456667788888876432        334445555544432   222222211


Q ss_pred             CCCCcccccccCCCCCcHHHHHHHcCCChhHHH-HHHhhhh-cccCCCCCCCchHHHHHHHHHHHHhhc-------cc--
Q 019351          150 DENDPKTHEGMDLTRVTTRELIAKYGLDDNTID-FIGHALA-LHRDDRYLNEPALDTVKRMKLYAESIA-------RF--  218 (342)
Q Consensus       150 ~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~--  218 (342)
                      ...     .....+..++.+|+++. +.++..+ ++.+.+. .+. .+....+....+..+..+....+       ..  
T Consensus       138 ~~~-----~~~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~~~  210 (475)
T 3lov_A          138 SDS-----LRIPEQDIPLGEYLRPR-LGDALVEKLIEPLLSGIYA-GNIDQMSTFATYPQFVANEQKAGSLFEGMRLMRP  210 (475)
T ss_dssp             CTT-----CCCCSSCCBHHHHHHHH-HCHHHHHHTHHHHHHGGGC-CCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHTCC
T ss_pred             ccc-----ccCCCCCcCHHHHHHHH-hCHHHHHHHHHHHhceeec-CChHHcCHHHHHHHHHHHHHhcCcHHHHHHHhcc
Confidence            110     00123578999999875 4454443 3333332 222 11111121111112111111110       00  


Q ss_pred             ------------cCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCC
Q 019351          219 ------------QGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS  286 (342)
Q Consensus       219 ------------~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~  286 (342)
                                  .....+.++++|+..+++.|++.+..  ++|+++++|++|+.+ +++ +.|+++++++.||+||+|++
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-~~~-~~v~~~~g~~~ad~vV~a~p  286 (475)
T 3lov_A          211 LDQLPQTPQTTIKATGQFLSLETGLESLIERLEEVLER--SEIRLETPLLAISRE-DGR-YRLKTDHGPEYADYVLLTIP  286 (475)
T ss_dssp             --------------CCSEEEETTCHHHHHHHHHHHCSS--CEEESSCCCCEEEEE-TTE-EEEECTTCCEEESEEEECSC
T ss_pred             cccccccccccccCCCcEEeeCChHHHHHHHHHhhccC--CEEEcCCeeeEEEEe-CCE-EEEEECCCeEECCEEEECCC
Confidence                        01356789999999999999986543  799999999999987 555 45666333899999999987


Q ss_pred             CC
Q 019351          287 YL  288 (342)
Q Consensus       287 ~~  288 (342)
                      .+
T Consensus       287 ~~  288 (475)
T 3lov_A          287 HP  288 (475)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.86  E-value=1.4e-20  Score=175.27  Aligned_cols=252  Identities=17%  Similarity=0.214  Sum_probs=146.6

Q ss_pred             CC-CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcch
Q 019351            1 MD-EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (342)
Q Consensus         1 m~-~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   79 (342)
                      |+ .++||+|||||++||+||++|+++|++|+|+|+++++||++.+....+                    +.++.+.++
T Consensus         1 m~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~g--------------------~~~~~g~~~   60 (453)
T 2yg5_A            1 VPTLQRDVAIVGAGPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTIDG--------------------AVLEIGGQW   60 (453)
T ss_dssp             -CEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEETT--------------------EEEECSCCC
T ss_pred             CCCCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCCCCceeccccCC--------------------ceeccCCeE
Confidence            54 368999999999999999999999999999999999999999876431                    344455444


Q ss_pred             hcc-ccHHHHHHhhcCCcceeeEEEcCceEEE-eC-CeEEecCCCcHHHhcCCCCChhhHHHHHHHH----HHHhhcCCC
Q 019351           80 IIA-NGALVRVLIHTDVTKYLYFKAVDGSFVY-NK-GKVHKVPATDMEALKSPLMGIFEKRRARKFF----IYVQDYDEN  152 (342)
Q Consensus        80 ~~~-~~~l~~~l~~~~~~~~l~~~~~~~~~~~-~~-g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~----~~~~~~~~~  152 (342)
                      +.. ...+.+++.+.++..+..+.  +...++ .+ |..+.+.....      .........+..++    .........
T Consensus        61 ~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (453)
T 2yg5_A           61 VSPDQTALISLLDELGLKTFERYR--EGESVYISSAGERTRYTGDSF------PTNETTKKEMDRLIDEMDDLAAQIGAE  132 (453)
T ss_dssp             BCTTCHHHHHHHHHTTCCEEECCC--CSEEEEECTTSCEEEECSSSC------SCCHHHHHHHHHHHHHHHHHHHHHCSS
T ss_pred             ecCccHHHHHHHHHcCCccccccc--CCCEEEEeCCCceeeccCCCC------CCChhhHHHHHHHHHHHHHHHhhcCCC
Confidence            332 23555666666665443221  222222 22 54444321100      00000101111111    111111111


Q ss_pred             Cccccc-ccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCC-CCchHHHHHHHHHHHHhhccc-----cCCCceE
Q 019351          153 DPKTHE-GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYL-NEPALDTVKRMKLYAESIARF-----QGGSPYI  225 (342)
Q Consensus       153 ~~~~~~-~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----~g~~~~~  225 (342)
                      .+.... ...++..|+.+|+++++.++....++...+......+.. ..+....+..+    ...+.+     .....+.
T Consensus       133 ~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~----~~~g~~~~~~~~~~~~~~  208 (453)
T 2yg5_A          133 EPWAHPLARDLDTVSFKQWLINQSDDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMA----ASAGSFSHLVDEDFILDK  208 (453)
T ss_dssp             CGGGSTTHHHHHSSBHHHHHHHHCSCHHHHHHHHHHHCCCCCCSCTTSSBHHHHHHHH----HHTTCHHHHHCHHHHTCE
T ss_pred             CCCCCcchhhhhhccHHHHHHhhcCCHHHHHHHHHHHHhhcccCCcccccHHHHHHHh----ccCCcHhhhccCCCcceE
Confidence            110000 012357899999999988887777665544221111111 22333222211    111100     0012357


Q ss_pred             EeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC
Q 019351          226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (342)
Q Consensus       226 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~  288 (342)
                      +++||++.+++.|++.+   |++|+++++|++|..+ +++.+.|+++++++.||+||+|++..
T Consensus       209 ~~~gG~~~l~~~l~~~l---g~~i~~~~~V~~i~~~-~~~~v~v~~~~~~~~ad~VI~a~p~~  267 (453)
T 2yg5_A          209 RVIGGMQQVSIRMAEAL---GDDVFLNAPVRTVKWN-ESGATVLADGDIRVEASRVILAVPPN  267 (453)
T ss_dssp             EETTCTHHHHHHHHHHH---GGGEECSCCEEEEEEE-TTEEEEEETTTEEEEEEEEEECSCGG
T ss_pred             EEcCChHHHHHHHHHhc---CCcEEcCCceEEEEEe-CCceEEEEECCeEEEcCEEEEcCCHH
Confidence            89999999999998754   8999999999999887 55524467788899999999998753

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.85  E-value=2e-20  Score=176.67  Aligned_cols=255  Identities=12%  Similarity=0.124  Sum_probs=150.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchh
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (342)
                      |.+.+||+|||||++||+||+.|+++|++|+|+|+++++||++++....                    .+.++.+++.+
T Consensus        10 ~~~~~~v~iiG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~--------------------g~~~~~g~~~~   69 (504)
T 1sez_A           10 HSSAKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQD--------------------GLIWDEGANTM   69 (504)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEET--------------------TEEEESSCCCB
T ss_pred             cCCCCeEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeeccC--------------------CeEEecCCccc
Confidence            4445899999999999999999999999999999999999999988653                    25566776666


Q ss_pred             ccc-cHHHHHHhhcCCcceeeEEEc-CceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccccc
Q 019351           81 IAN-GALVRVLIHTDVTKYLYFKAV-DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE  158 (342)
Q Consensus        81 ~~~-~~l~~~l~~~~~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~  158 (342)
                      ... ..+.+++.+.++...+.+... ...+.+.+|..+.+|.+....+...+++...+  +..+...+..... .+.  .
T Consensus        70 ~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~--~  144 (504)
T 1sez_A           70 TESEGDVTFLIDSLGLREKQQFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSK--LQMLLEPILWKNK-KLS--Q  144 (504)
T ss_dssp             CCCSHHHHHHHHHTTCGGGEECCSSCCCEEEESSSSEEECCSSHHHHHHSSSSCHHHH--HHHHTHHHHC----------
T ss_pred             ccCcHHHHHHHHHcCCcccceeccCCCceEEEECCeEEECCCCHHHHhccccCCHHHH--HHHhHhhhccCcc-ccc--c
Confidence            543 355667777777665544322 22455668888888865444444445554322  1111111111000 000  0


Q ss_pred             ccCCCCCcHHHHHHHcCCChhHHH-HHHhhhh-cccCCCCCCCchHHHHHHHHHHHH------------hhccccC----
Q 019351          159 GMDLTRVTTRELIAKYGLDDNTID-FIGHALA-LHRDDRYLNEPALDTVKRMKLYAE------------SIARFQG----  220 (342)
Q Consensus       159 ~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~g----  220 (342)
                       ...+..|+.+|+++. +.+...+ ++.+... .+. .+....+....+..+..+..            .+....+    
T Consensus       145 -~~~~~~s~~~~l~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  221 (504)
T 1sez_A          145 -VSDSHESVSGFFQRH-FGKEVVDYLIDPFVAGTCG-GDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEKKQG  221 (504)
T ss_dssp             ----CCCBHHHHHHHH-HCHHHHHTTHHHHHHHHHS-CCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC--------
T ss_pred             -cCCCCccHHHHHHHH-cCHHHHHHHHHHHHccccC-CChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhccccccccc
Confidence             012458999999876 5555443 3333322 221 11111122222111111100            0100000    


Q ss_pred             ----------CCceEEeCCCCChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCc-----EEEEEe---CC---cEEEc
Q 019351          221 ----------GSPYIYPLYGLGELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGK-----VVGVTS---EG---ETAKC  278 (342)
Q Consensus       221 ----------~~~~~~~~gG~~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~-----~~~v~~---~g---~~~~a  278 (342)
                                ...+++++||++.++++|++.   .| ++|+++++|++|..+ +++     .+.|+.   +|   +++.|
T Consensus       222 ~~~~~~~~~~~~~~~~~~GG~~~l~~~l~~~---l~~~~i~~~~~V~~I~~~-~~~~~~~~~~~v~~~~~~g~~~~~~~a  297 (504)
T 1sez_A          222 PPKTSANKKRQRGSFSFLGGMQTLTDAICKD---LREDELRLNSRVLELSCS-CTEDSAIDSWSIISASPHKRQSEEESF  297 (504)
T ss_dssp             --CCCSCCSTTCSCBEETTCTHHHHHHHHTT---SCTTTEETTCCEEEEEEE-CSSSSSSCEEEEEEBCSSSSCBCCCEE
T ss_pred             ccchhhccccCCceEeeCcHHHHHHHHHHhh---cccceEEcCCeEEEEEec-CCCCcccceEEEEEcCCCCccceeEEC
Confidence                      123678899999999999863   35 789999999999987 444     133443   34   57899


Q ss_pred             CEEEECCCC
Q 019351          279 KKVVCDPSY  287 (342)
Q Consensus       279 ~~vI~~~~~  287 (342)
                      |+||+|++.
T Consensus       298 d~VI~a~p~  306 (504)
T 1sez_A          298 DAVIMTAPL  306 (504)
T ss_dssp             SEEEECSCH
T ss_pred             CEEEECCCH
Confidence            999999874

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.81  E-value=4.2e-19  Score=164.28  Aligned_cols=247  Identities=17%  Similarity=0.112  Sum_probs=134.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc--
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA--   82 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~--   82 (342)
                      +||+|||||++||+||++|+++|++|+|||+++++||++.+.+..-                 .-.+.++++..++..  
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~c-----------------ipg~~~~~g~~~~~~~~   64 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRESRN-----------------VPGLRVEIGGAYLHRKH   64 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEECSS-----------------STTCEEESSCCCBCTTT
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCccCeecceeccC-----------------CCCceEecCCeeeCCCC
Confidence            7999999999999999999999999999999999999998765420                 001334444444332  


Q ss_pred             ccHHHHHHhhcCCcceeeEEEcCceEEE--eCCeEEec-CCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccccc-
Q 019351           83 NGALVRVLIHTDVTKYLYFKAVDGSFVY--NKGKVHKV-PATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHE-  158 (342)
Q Consensus        83 ~~~l~~~l~~~~~~~~l~~~~~~~~~~~--~~g~~~~~-~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~-  158 (342)
                      ...+.+.+.+.++....  ........+  .++.+... +.. .....      ..+....++......+....+.... 
T Consensus        65 ~~~~~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~  135 (431)
T 3k7m_X           65 HPRLAAELDRYGIPTAA--ASEFTSFRHRLGPTAVDQAFPIP-GSEAV------AVEAATYTLLRDAHRIDLEKGLENQD  135 (431)
T ss_dssp             CHHHHHHHHHHTCCEEE--CCCCCEECCBSCTTCCSSSSCCC-GGGHH------HHHHHHHHHHHHHTTCCTTTCTTSSS
T ss_pred             cHHHHHHHHHhCCeeee--cCCCCcEEEEecCCeecCCCCCC-HHHHH------HHHHHHHHHHHHHHhcCCCCCccCcc
Confidence            22444555554443221  111111111  12221111 000 00000      0112233444443333211111111 


Q ss_pred             ccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhcc-ccCCCceEEeCCCCChHHHH
Q 019351          159 GMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIAR-FQGGSPYIYPLYGLGELPQA  237 (342)
Q Consensus       159 ~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~gG~~~l~~~  237 (342)
                      ...++ .++.++++..+.++....++...+...........+....+..+......+.. +.+ ... .+.+|+..+++.
T Consensus       136 ~~~~d-~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~g~~~l~~~  212 (431)
T 3k7m_X          136 LEDLD-IPLNEYVDKLDLPPVSRQFLLAWAWNMLGQPADQASALWMLQLVAAHHYSILGVVLS-LDE-VFSNGSADLVDA  212 (431)
T ss_dssp             CGGGC-SBHHHHHHHHTCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHTTSCHHHHHHT-CCE-EETTCTHHHHHH
T ss_pred             hhhhc-CCHHHHHHhcCCCHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHhcCCccceeecc-hhh-hcCCcHHHHHHH
Confidence            11234 88999999888887766655443332222222222333332222111000000 101 122 678888888887


Q ss_pred             HHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCC
Q 019351          238 FARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (342)
Q Consensus       238 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~  286 (342)
                      +++   ..| +|+++++|++|+.+ ++++. |++ +|.+++||+||+|++
T Consensus       213 ~~~---~~g-~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~vi~a~~  256 (431)
T 3k7m_X          213 MSQ---EIP-EIRLQTVVTGIDQS-GDVVN-VTVKDGHAFQAHSVIVATP  256 (431)
T ss_dssp             HHT---TCS-CEESSCCEEEEECS-SSSEE-EEETTSCCEEEEEEEECSC
T ss_pred             HHh---hCC-ceEeCCEEEEEEEc-CCeEE-EEECCCCEEEeCEEEEecC
Confidence            764   457 99999999999876 55554 555 666799999999998

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.80  E-value=4.8e-19  Score=163.59  Aligned_cols=247  Identities=15%  Similarity=0.123  Sum_probs=136.3

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchh
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (342)
                      ++++||+|||||++||+||++|+++| ++|+|+|+++++||+++|.+..+                    +.+|.+++++
T Consensus         4 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~~~G--------------------~~~d~G~~~~   63 (424)
T 2b9w_A            4 SKDSRIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPNYHG--------------------RRYEMGAIMG   63 (424)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCEETT--------------------EECCSSCCCB
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccCCCC--------------------cccccCceee
Confidence            35689999999999999999999999 99999999999999999986532                    3445555444


Q ss_pred             ccc-cHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhh-cCCCCcc-cc
Q 019351           81 IAN-GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQD-YDENDPK-TH  157 (342)
Q Consensus        81 ~~~-~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~-~~~~~~~-~~  157 (342)
                      ... ..+.+++.+.++...  .......+.+.+|... .+..+.....      .....+.++...+.. +...... ..
T Consensus        64 ~~~~~~~~~l~~~~g~~~~--~~~~~~~~~~~~g~~~-~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~~~~~  134 (424)
T 2b9w_A           64 VPSYDTIQEIMDRTGDKVD--GPKLRREFLHEDGEIY-VPEKDPVRGP------QVMAAVQKLGQLLATKYQGYDANGHY  134 (424)
T ss_dssp             CTTCHHHHHHHHHHCCCCC--SCCCCEEEECTTSCEE-CGGGCTTHHH------HHHHHHHHHHHHHHTTTTTTTSSSSS
T ss_pred             cCCcHHHHHHHHHhCCccc--cccccceeEcCCCCEe-ccccCcccch------hHHHHHHHHHHHHhhhhhhcccccch
Confidence            332 234445544444321  0111122333355543 2211000000      000112233333222 1100000 00


Q ss_pred             -cccCCCCCcHHHHHHHcCCChhHHHHH-HhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHH
Q 019351          158 -EGMDLTRVTTRELIAKYGLDDNTIDFI-GHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELP  235 (342)
Q Consensus       158 -~~~~~~~~s~~~~l~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~  235 (342)
                       ........|+.+|+++.+.+. ..+.+ .+.+.... ++....|+...+...... ...... +. ..+++.+|+..++
T Consensus       135 ~~~~~~~~~s~~~~l~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~a~~~~~~~~~~-~~~~~~-~~-~~~~~~~g~~~l~  209 (424)
T 2b9w_A          135 NKVHEDLMLPFDEFLALNGCEA-ARDLWINPFTAFGY-GHFDNVPAAYVLKYLDFV-TMMSFA-KG-DLWTWADGTQAMF  209 (424)
T ss_dssp             SCCCGGGGSBHHHHHHHTTCGG-GHHHHTTTTCCCCC-CCTTTSBHHHHHHHSCHH-HHHHHH-HT-CCBCCTTCHHHHH
T ss_pred             hhhhhhhccCHHHHHHhhCcHH-HHHHHHHHHHhhcc-CChHhcCHHHHHHhhhHh-hhhccc-CC-ceEEeCChHHHHH
Confidence             001224589999999987764 44332 22222111 122223333322111110 000001 11 2236788999999


Q ss_pred             HHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351          236 QAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       236 ~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~  287 (342)
                      +.|.+.+   +.+|+++++|++|..+ ++++. |+++++++.||+||+|++.
T Consensus       210 ~~l~~~l---~~~v~~~~~V~~i~~~-~~~v~-v~~~~g~~~ad~Vv~a~~~  256 (424)
T 2b9w_A          210 EHLNATL---EHPAERNVDITRITRE-DGKVH-IHTTDWDRESDVLVLTVPL  256 (424)
T ss_dssp             HHHHHHS---SSCCBCSCCEEEEECC-TTCEE-EEESSCEEEESEEEECSCH
T ss_pred             HHHHHhh---cceEEcCCEEEEEEEE-CCEEE-EEECCCeEEcCEEEECCCH
Confidence            9887643   6789999999999876 56654 6665556999999999875

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.76  E-value=1e-17  Score=156.87  Aligned_cols=242  Identities=14%  Similarity=0.157  Sum_probs=136.9

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCCCCCcCccc-chHHHHHhccCCCCCCCCCCCCCcceeccCcchh
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSL-NLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFI   80 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~~GG~~~t~-~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~   80 (342)
                      ..+||+|||||++||+||++|+++| .+|+|+|+++++||++++. ...                    .+.++.+++.+
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~--------------------g~~~~~g~~~~   67 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDEN--------------------GFTWDLGGHVI   67 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTT--------------------SCEEESSCCCB
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCC--------------------CcEEeeCCccc
Confidence            3589999999999999999999999 8999999999999999985 332                    35667777666


Q ss_pred             ccccHHH-HHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhH-HHHHHHHHHHhhcCCCCccccc
Q 019351           81 IANGALV-RVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEK-RRARKFFIYVQDYDENDPKTHE  158 (342)
Q Consensus        81 ~~~~~l~-~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k-~~~~~~~~~~~~~~~~~~~~~~  158 (342)
                      ....+.+ +++.+. +..+..  .....+++.+|+++.+|.+..  +.  .+....+ ..+..++..-....        
T Consensus        68 ~~~~~~~~~l~~~~-~~~~~~--~~~~~~~~~~g~~~~~P~~~~--~~--~l~~~~~~~~~~~ll~~~~~~~--------  132 (484)
T 4dsg_A           68 FSHYQYFDDVMDWA-VQGWNV--LQRESWVWVRGRWVPYPFQNN--IH--RLPEQDRKRCLDELVRSHARTY--------  132 (484)
T ss_dssp             CCSBHHHHHHHHHH-CSCEEE--EECCCEEEETTEEEESSGGGC--GG--GSCHHHHHHHHHHHHHHHHCCC--------
T ss_pred             ccChHHHHHHHHHH-hhhhhh--ccCceEEEECCEEEEeCccch--hh--hCCHHHHHHHHHHHHHHHhccC--------
Confidence            5544333 333332 233322  223456667999998883211  11  0111111 11112222210100        


Q ss_pred             ccCCCCCcHHHHHHHcCCChhHHH-HHHhhh-hccc------CCCCC--CCchHHHHHHHHHHHHhhc--cccCCCceEE
Q 019351          159 GMDLTRVTTRELIAKYGLDDNTID-FIGHAL-ALHR------DDRYL--NEPALDTVKRMKLYAESIA--RFQGGSPYIY  226 (342)
Q Consensus       159 ~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~-~l~~------~~~~~--~~~~~~~~~~~~~~~~~~~--~~~g~~~~~~  226 (342)
                        ..+..++.+|+.+. +...+.+ ++.+.. +.+.      ...+.  .-+.......+........  .+.....|.|
T Consensus       133 --~~~~~s~~e~~~~~-~g~~~~~~~~~p~~~~v~~~~~~~ls~~~~~~r~~~~~l~~~~~~~~~~~~~~~~~~~~~f~y  209 (484)
T 4dsg_A          133 --TEPPNNFEESFTRQ-FGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDLERIRRNIQENRDDLGWGPNATFRF  209 (484)
T ss_dssp             --SSCCSSHHHHHHHH-HHHHHCCCCCHHHHHHHHSSCGGGBCSSSCTTTSCCCCHHHHHHHHHHTCCCCCCSTTSEEEE
T ss_pred             --CCCCCCHHHHHHHH-hHHHHHHHHHHHHHhhhcCCCHHHhcHHHHhccccCCCHHHHHHHHhhcccccCCCccceEEe
Confidence              12568899998765 3333322 112111 1111      00000  0011001011111111110  0101345778


Q ss_pred             eC-CCCChHHHHHHHHHHHcCcEEEcC--CccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351          227 PL-YGLGELPQAFARLSAVYGGTYMLN--KPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       227 ~~-gG~~~l~~~l~~~~~~~G~~i~~~--~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~  287 (342)
                      |. ||++.++++|++.+..  .+|+++  ++|++|..+ ++++.  ..+|+++.||+||+|++.
T Consensus       210 p~~gG~~~l~~~la~~l~~--~~i~~~~~~~V~~I~~~-~~~v~--~~~G~~~~ad~VI~a~p~  268 (484)
T 4dsg_A          210 PQRGGTGIIYQAIKEKLPS--EKLTFNSGFQAIAIDAD-AKTIT--FSNGEVVSYDYLISTVPF  268 (484)
T ss_dssp             ESSSCTHHHHHHHHHHSCG--GGEEECGGGCEEEEETT-TTEEE--ETTSCEEECSEEEECSCH
T ss_pred             ecCCCHHHHHHHHHhhhhh--CeEEECCCceeEEEEec-CCEEE--ECCCCEEECCEEEECCCH
Confidence            85 8999999999986643  289999  569999876 55432  257788999999999864

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.76  E-value=1.4e-17  Score=156.58  Aligned_cols=266  Identities=13%  Similarity=0.069  Sum_probs=131.3

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhc
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (342)
                      ++.+||+|||||++||+||+.|+++|++|+|||+++++||++++.....   .+..-............+..+.++..+.
T Consensus         9 ~~~~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~g~~~~~   85 (489)
T 2jae_A            9 KGSHSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGS---EETDLSGETQKCTFSEGHFYNVGATRIP   85 (489)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTC---EEECTTSCEEECCCCTTCEEESSCCCEE
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCc---ccccccchhhhhcccCCCcCCcchhhcc
Confidence            3468999999999999999999999999999999999999998876421   0000000000000001233455554444


Q ss_pred             cccHHHHHHhhcCCcceeeEEEc-CceEEE-eC-----CeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCc
Q 019351           82 ANGALVRVLIHTDVTKYLYFKAV-DGSFVY-NK-----GKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDP  154 (342)
Q Consensus        82 ~~~~l~~~l~~~~~~~~l~~~~~-~~~~~~-~~-----g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~  154 (342)
                      ....+.+++.+.++... .+... ...+++ .+     |....++....+ +       ..  .+..++......... .
T Consensus        86 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~-------~~--~~~~l~~~~~~~~~~-~  153 (489)
T 2jae_A           86 QSHITLDYCRELGVEIQ-GFGNQNANTFVNYQSDTSLSGQSVTYRAAKAD-T-------FG--YMSELLKKATDQGAL-D  153 (489)
T ss_dssp             TTSTHHHHHHHHTCCEE-EECCCCTTSEEECCCSSTTTTCCEEHHHHHHH-H-------HH--HHHHHHHHHHHHTTT-T
T ss_pred             cHHHHHHHHHHcCCceE-EccccCCCceEEecCCcccCCccccHHHHhhh-h-------hc--cHHHHHHHHHhcccc-c
Confidence            33356666666665422 11111 223444 33     444433311000 0       00  011111111110000 0


Q ss_pred             ccccccCCCCCcHHHHHHHcCCChhHHHHHHhhhhccc-C---CCCCC----CchHHHHHH--HHHHHHhhccccCCCce
Q 019351          155 KTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHR-D---DRYLN----EPALDTVKR--MKLYAESIARFQGGSPY  224 (342)
Q Consensus       155 ~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~-~---~~~~~----~~~~~~~~~--~~~~~~~~~~~~g~~~~  224 (342)
                      ..  ....+..++.+|+++++-......+-......+. .   .....    ......+..  +..++...........+
T Consensus       154 ~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (489)
T 2jae_A          154 QV--LSREDKDALSEFLSDFGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQEVIRSGIGRNFSFDFGYDQAMMM  231 (489)
T ss_dssp             TT--SCHHHHHHHHHHHHHHTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCCCCHHHHHHHTTTTTGGGGGCTTTSSSE
T ss_pred             cc--cchhhHHHHHHHHHHhhhhhhccccccccchhhccCCCcccccCCCCCCcCHHHHhhhhHHHHHhhhhccccCccE
Confidence            00  0001234777887764211000000000000000 0   00000    001111100  00011100011123567


Q ss_pred             EEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCC---cEEEcCEEEECCCC
Q 019351          225 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG---ETAKCKKVVCDPSY  287 (342)
Q Consensus       225 ~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g---~~~~a~~vI~~~~~  287 (342)
                      ++++||++.++++|++.+..  ++|+++++|++|..+ ++++.+...+|   .++.||+||+|++.
T Consensus       232 ~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~i~~~-~~~v~v~~~~g~~~~~~~ad~vI~a~p~  294 (489)
T 2jae_A          232 FTPVGGMDRIYYAFQDRIGT--DNIVFGAEVTSMKNV-SEGVTVEYTAGGSKKSITADYAICTIPP  294 (489)
T ss_dssp             EEETTCTTHHHHHHHHHHCG--GGEETTCEEEEEEEE-TTEEEEEEEETTEEEEEEESEEEECSCH
T ss_pred             EeecCCHHHHHHHHHHhcCC--CeEEECCEEEEEEEc-CCeEEEEEecCCeEEEEECCEEEECCCH
Confidence            88999999999999986532  789999999999987 66655333355   57999999999864

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.75  E-value=5e-18  Score=160.64  Aligned_cols=234  Identities=14%  Similarity=0.148  Sum_probs=119.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCCCCCcCcccch-HHHHHhccCCCCCCCCCCCCCcceeccCcchhc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYGGESSSLNL-IQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~~GG~~~t~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (342)
                      .+||+|||||++||+||++|+++| ++|+|||+++++||+++|... .+                    +.+|++++++.
T Consensus         8 ~~~VvIIGaG~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G--------------------~~~D~G~~~~~   67 (516)
T 1rsg_A            8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQG--------------------RKYDIGASWHH   67 (516)
T ss_dssp             EEEEEEECCBHHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGG--------------------CEEESSCCEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCC--------------------cEEecCCeEEe
Confidence            479999999999999999999999 999999999999999998764 22                    34455555443


Q ss_pred             c--ccHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccc
Q 019351           82 A--NGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEG  159 (342)
Q Consensus        82 ~--~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~  159 (342)
                      .  ..++.+++.+.++...      ...+.+.++..+.++... ..+.......+. ..+..+..+........      
T Consensus        68 ~~~~~~~~~~~~~lg~~~~------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------  133 (516)
T 1rsg_A           68 DTLTNPLFLEEAQLSLNDG------RTRFVFDDDNFIYIDEER-GRVDHDKELLLE-IVDNEMSKFAELEFHQH------  133 (516)
T ss_dssp             CTTTCHHHHHHHHHHHHHC------CCCEECCCCCCEEEETTT-EECTTCTTTCHH-HHHHHHHHHHHHHC---------
T ss_pred             cCCCChHHHHHHHhCCCCc------ceeEEECCCCEEEEcCCC-ccccccHHHHHH-HHHHHHHHHHHHHhhhc------
Confidence            2  2244444333222110      001111122222111110 000000000011 11112222222111100      


Q ss_pred             cCCCCCcHHHHHHHc------CCChhHHHHHHhhhh---cccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCC
Q 019351          160 MDLTRVTTRELIAKY------GLDDNTIDFIGHALA---LHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYG  230 (342)
Q Consensus       160 ~~~~~~s~~~~l~~~------~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG  230 (342)
                      ...++.|+.+|+.++      .+++....++..++.   .+........+....          +... . ....++++ 
T Consensus       134 ~~~~d~s~~~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~s~~~~----------~~~~-~-~~~~~~~g-  200 (516)
T 1rsg_A          134 LGVSDCSFFQLVMKYLLQRRQFLTNDQIRYLPQLCRYLELWHGLDWKLLSAKDT----------YFGH-Q-GRNAFALN-  200 (516)
T ss_dssp             ----CCBHHHHHHHHHHHHGGGSCHHHHHHHHHHHGGGHHHHTBCTTTSBHHHH----------CCCC-S-SCCEEESC-
T ss_pred             cCCCCCCHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHHHhCCChHHCChHHH----------Hhhc-c-CcchhhhC-
Confidence            012467888877643      122222222222221   111111111111110          1011 1 12346666 


Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~  287 (342)
                      ++.+++.|++.+.  +++|+++++|++|..+ +++.+.|++ +|+++.||+||+|++.
T Consensus       201 ~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~-~~~~v~v~~~~g~~~~ad~VI~t~p~  255 (516)
T 1rsg_A          201 YDSVVQRIAQSFP--QNWLKLSCEVKSITRE-PSKNVTVNCEDGTVYNADYVIITVPQ  255 (516)
T ss_dssp             HHHHHHHHHTTSC--GGGEETTCCEEEEEEC-TTSCEEEEETTSCEEEEEEEEECCCH
T ss_pred             HHHHHHHHHHhCC--CCEEEECCEEEEEEEc-CCCeEEEEECCCcEEECCEEEECCCH
Confidence            8888888876442  3679999999999875 333345665 6778999999999864

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.75  E-value=9e-17  Score=151.42  Aligned_cols=272  Identities=17%  Similarity=0.185  Sum_probs=146.5

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   82 (342)
                      ..+||+|||||++||+||+.|+++|++|+|+|+++++||++.+.....                  ..+..+++++.+..
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~------------------~~~~~~~g~~~~~~   93 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE------------------AGWYANLGPMRLPE   93 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT------------------TTEEEESSCCCEET
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCC------------------CCchhhcCcccccc
Confidence            358999999999999999999999999999999999999998775210                  12444555544443


Q ss_pred             ccH-HHHHHhhcCCcceeeEEEc-CceEEEeCCeEEecCC--CcHHHhcCCC------CChhh--HHHHHHHHHHHhhcC
Q 019351           83 NGA-LVRVLIHTDVTKYLYFKAV-DGSFVYNKGKVHKVPA--TDMEALKSPL------MGIFE--KRRARKFFIYVQDYD  150 (342)
Q Consensus        83 ~~~-l~~~l~~~~~~~~l~~~~~-~~~~~~~~g~~~~~~~--~~~~~~~~~~------~~~~~--k~~~~~~~~~~~~~~  150 (342)
                      ... +.+++.+.++... .+... ...+.+.+|.....+.  .....+...+      ....+  ...+.++...+....
T Consensus        94 ~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (498)
T 2iid_A           94 KHRIVREYIRKFDLRLN-EFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTN  172 (498)
T ss_dssp             TCHHHHHHHHHTTCCEE-EECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHhCCCce-eecccCCccEEEeCCeeecccccccCccccccCCCccccCCCHHHHHHHHHHHHHHHHhhcc
Confidence            333 3344555554321 11111 2223334554332210  0000111100      00000  001112222111110


Q ss_pred             CCCcccccccCCCCCcHHHHHHHcC-CChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCC
Q 019351          151 ENDPKTHEGMDLTRVTTRELIAKYG-LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLY  229 (342)
Q Consensus       151 ~~~~~~~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g  229 (342)
                      .  .  .....++..++.+|+...+ +++...+.+...+...  ..+. ......+....       .+.....+.+++|
T Consensus       173 ~--~--~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~-------~~~~~~~~~~~~g  238 (498)
T 2iid_A          173 C--S--YILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNED--SGYY-VSFIESLKHDD-------IFAYEKRFDEIVD  238 (498)
T ss_dssp             H--H--HHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCG--GGTT-SBHHHHHHHHH-------HHTTCCCEEEETT
T ss_pred             H--H--HHHHHhhhhhHHHHHHHccCCCHHHHHHHHHhcCcc--cchh-HHHHHHHHHHh-------ccccCcceEEeCC
Confidence            0  0  0001235688999998875 5665554443322110  0010 11111111110       1112345778999


Q ss_pred             CCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCc----EEEcCEEEECCCCC--------Ccc----c-
Q 019351          230 GLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGE----TAKCKKVVCDPSYL--------PNK----V-  292 (342)
Q Consensus       230 G~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~----~~~a~~vI~~~~~~--------~~~----~-  292 (342)
                      |++.++++|++.+.   .+|+++++|++|..+ ++++.+...+++    +++||+||+|++..        |..    . 
T Consensus       239 G~~~l~~~l~~~l~---~~i~~~~~V~~I~~~-~~~v~v~~~~~~~~~~~~~ad~vI~t~p~~~~~~i~f~p~Lp~~~~~  314 (498)
T 2iid_A          239 GMDKLPTAMYRDIQ---DKVHFNAQVIKIQQN-DQKVTVVYETLSKETPSVTADYVIVCTTSRAVRLIKFNPPLLPKKAH  314 (498)
T ss_dssp             CTTHHHHHHHHHTG---GGEESSCEEEEEEEC-SSCEEEEEECSSSCCCEEEESEEEECSCHHHHTTSEEESCCCHHHHH
T ss_pred             cHHHHHHHHHHhcc---cccccCCEEEEEEEC-CCeEEEEEecCCcccceEEeCEEEECCChHHHhheecCCCCCHHHHH
Confidence            99999999998654   389999999999987 566543333443    58999999998743        211    0 


Q ss_pred             --c--ccceeEEEEEEecCCCCC
Q 019351          293 --R--KVGRVARAIAIMSHPIPN  311 (342)
Q Consensus       293 --~--~~~~~~~~~~i~~~~l~~  311 (342)
                        .  ......+.++.+++|.|.
T Consensus       315 ai~~l~~~~~~kv~l~~~~~~w~  337 (498)
T 2iid_A          315 ALRSVHYRSGTKIFLTCTTKFWE  337 (498)
T ss_dssp             HHHHCCEECEEEEEEEESSCGGG
T ss_pred             HHHhCCCcceeEEEEEeCCCCcc
Confidence              1  123455666667778764

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.74  E-value=4e-17  Score=146.75  Aligned_cols=259  Identities=12%  Similarity=0.152  Sum_probs=133.6

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC-CCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN-DYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFII   81 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~-~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~   81 (342)
                      ..+||+|||||++||+||+.|+++|++|+|||++ +++||++.+.....   ..      +..+. ...+.++.++..+.
T Consensus        43 ~~~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~---~~------~~~~~-~~~~~~e~G~~~~~  112 (376)
T 2e1m_A           43 PPKRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKK---GE------PSPFA-DPAQYAEAGAMRLP  112 (376)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCT---TS------CCSSS-STTCCEESSCCCEE
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccc---cc------ccccc-CCCcEEecCceeec
Confidence            4589999999999999999999999999999999 99999999876310   00      00000 01233444443332


Q ss_pred             ccc-HHHHHHhhcCCcceeeEEEc-----------------------------------------CceEEEeCCeEEecC
Q 019351           82 ANG-ALVRVLIHTDVTKYLYFKAV-----------------------------------------DGSFVYNKGKVHKVP  119 (342)
Q Consensus        82 ~~~-~l~~~l~~~~~~~~l~~~~~-----------------------------------------~~~~~~~~g~~~~~~  119 (342)
                      ... .+.+++.+.++.....+...                                         ....++.+|......
T Consensus       113 ~~~~~~~~~~~~lGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~q~~r~~~~~~~~~~~g~~~~~~  192 (376)
T 2e1m_A          113 SFHPLTLALIDKLGLKRRLFFNVDIDPQTGNQDAPVPPVFYKSFKDGKTWTNGAPSPEFKEPDKRNHTWIRTNREQVRRA  192 (376)
T ss_dssp             TTCHHHHHHHHHTTCCEEEECSSCCCTTSSBCSSCCCCCEEECSSTTCEEESSCCCTTCBCCCCCCCSEEEETTEEEEHH
T ss_pred             chHHHHHHHHHHcCCCcceeeccccccccccccccccccceeeeccceeEeccCCcccccccccCCCceEEECCceeccc
Confidence            222 33445555565544321110                                         122333455443321


Q ss_pred             C--CcHHHhc--CCC------CCh--hhHHHHHHHHHHHhhcCCC-------Cc---ccccc--cCCCCCcHHHHHH-Hc
Q 019351          120 A--TDMEALK--SPL------MGI--FEKRRARKFFIYVQDYDEN-------DP---KTHEG--MDLTRVTTRELIA-KY  174 (342)
Q Consensus       120 ~--~~~~~~~--~~~------~~~--~~k~~~~~~~~~~~~~~~~-------~~---~~~~~--~~~~~~s~~~~l~-~~  174 (342)
                      .  .....+.  ..+      ..+  +-...+.+|...+......       .+   ..+..  .+++..|+.+||+ +.
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lD~~S~~~~L~~~~  272 (376)
T 2e1m_A          193 QYATDPSSINEGFHLTGCETRLTVSDMVNQALEPVRDYYSVKQDDGTRVNKPFKEWLAGWADVVRDFDGYSMGRFLREYA  272 (376)
T ss_dssp             HHHHCTHHHHHHTTCCGGGGGSCHHHHHHHHHHHHHHHHEEEETTTEEEECCHHHHHHHHHHHHHHHTTCBHHHHHHHTS
T ss_pred             ccccCHHHhccccCCchhhcccCHHHHHHHHHHHHHHhhhhccccccccccccchhhccchHHHHHHhCCCHHHHHhhcc
Confidence            0  0001111  000      011  0112333344433210000       00   00111  1357899999998 78


Q ss_pred             CCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCc
Q 019351          175 GLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKP  254 (342)
Q Consensus       175 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~  254 (342)
                      ++++..++++.....   .......+....+   .   . ...+.+...++.+.||+..|+++|++.+   +.+|+++++
T Consensus       273 g~s~~~~~~~~~~~~---~~~~~~~s~l~~l---~---~-~~~~~~~~~~~~i~GG~~~l~~~l~~~l---~~~i~l~~~  339 (376)
T 2e1m_A          273 EFSDEAVEAIGTIEN---MTSRLHLAFFHSF---L---G-RSDIDPRATYWEIEGGSRMLPETLAKDL---RDQIVMGQR  339 (376)
T ss_dssp             CCCHHHHHHHHHHTT---CTTTTTSBHHHHH---H---H-CSCSCTTCCEEEETTCTTHHHHHHHHHG---GGTEECSEE
T ss_pred             CCCHHHHHHHHhhcC---ccccchhhHHHHH---H---H-hhhhccCCceEEECCcHHHHHHHHHHhc---CCcEEecCe
Confidence            899988876644331   1111111222221   1   1 1112235678899999999999999865   678999999


Q ss_pred             cceEEEcCCCcEEEEEeCCcEEEcCEEEECC
Q 019351          255 ECKVEFDEEGKVVGVTSEGETAKCKKVVCDP  285 (342)
Q Consensus       255 V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~  285 (342)
                      |++|.++ ++++..+..+.....-.+|++.+
T Consensus       340 V~~I~~~-~~gv~v~~~~~~~~~g~~~~~~~  369 (376)
T 2e1m_A          340 MVRLEYY-DPGRDGHHGELTGPGGPAVAIQT  369 (376)
T ss_dssp             EEEEEEC-CCC-------------CCEEEEE
T ss_pred             EEEEEEC-CCceEEEeCCCcCCCCCeeEEEe
Confidence            9999987 44444443332223334455443

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.73  E-value=4.2e-19  Score=162.45  Aligned_cols=235  Identities=15%  Similarity=0.142  Sum_probs=131.3

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhC-CCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCccee-ccCcc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPK   78 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~   78 (342)
                      |+.++||+|||||++||+||++|+++ |++|+|+|+++++||++++.....                  ..+.+ +.+++
T Consensus         4 m~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~------------------~g~~~~~~G~~   65 (399)
T 1v0j_A            4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQ------------------TGIEVHKYGAH   65 (399)
T ss_dssp             CCCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTT------------------TCCEEETTSCC
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccC------------------CCEEEEeCCCc
Confidence            44469999999999999999999999 999999999999999999886410                  11334 35666


Q ss_pred             hhccc-cHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCc--HHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcc
Q 019351           79 FIIAN-GALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATD--MEALKSPLMGIFEKRRARKFFIYVQDYDENDPK  155 (342)
Q Consensus        79 ~~~~~-~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~  155 (342)
                      ++... ..+.+++.+.++...  +  ....+++.+|+.+.+|.+.  ...+....+.   ...+.+++........    
T Consensus        66 ~~~~~~~~~~~~~~~~g~~~~--~--~~~~~~~~~G~~~~~p~~~~~~~~l~~~~~~---~~~~~~~l~~~~~~~~----  134 (399)
T 1v0j_A           66 LFHTSNKRVWDYVRQFTDFTD--Y--RHRVFAMHNGQAYQFPMGLGLVSQFFGKYFT---PEQARQLIAEQAAEID----  134 (399)
T ss_dssp             CEEESCHHHHHHHTTTCCBCC--C--CCCEEEEETTEEEEESSSHHHHHHHHTSCCC---HHHHHHHHHHHGGGSC----
T ss_pred             EEcCCcHHHHHHHHHhhhhhc--c--ccceEEEECCEEEeCCCCHHHHHHHhcccCC---HHHHHHHHHHHhhccC----
Confidence            55543 355555655444211  1  2234455689998888652  1222221111   1223322222211100    


Q ss_pred             cccccCCCCCcHHHHHHHcCCChhHHH-HHHhhh-hcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceE-EeCCCCC
Q 019351          156 THEGMDLTRVTTRELIAKYGLDDNTID-FIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI-YPLYGLG  232 (342)
Q Consensus       156 ~~~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~gG~~  232 (342)
                           ..+..|+.+|+.+. +.+...+ ++.+.. +.+... ....++... .++.........+ ....|. +|+||+.
T Consensus       135 -----~~~~~s~~e~l~~~-~g~~~~~~~~~~~~~~~~~~~-~~~ls~~~~-~~~~~~~~~~~~~-~~~~~~~~p~gG~~  205 (399)
T 1v0j_A          135 -----TADAQNLEEKAISL-IGRPLYEAFVKGYTAKQWQTD-PKELPAANI-TRLPVRYTFDNRY-FSDTYEGLPTDGYT  205 (399)
T ss_dssp             -----TTC----CCHHHHH-HCHHHHHHHTHHHHHHHHTSC-GGGSCGGGC-SCCCCCSSSCCCS-CCCSEEECBTTHHH
T ss_pred             -----CCCcccHHHHHHHH-HhHHHHHHHHHHHHHhhcCCC-hhhcChHhh-hcceeEeccccch-hhhhhcccccccHH
Confidence                 11457888888875 5555443 333322 222211 101111110 0000000000001 122453 8999999


Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEE-EcCEEEECCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETA-KCKKVVCDPSY  287 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~-~a~~vI~~~~~  287 (342)
                      .++++|++   ..|++|+++++|++|..+       |  +  ++ .||+||+|+..
T Consensus       206 ~l~~~l~~---~~g~~I~l~~~V~~I~~~-------v--~--~~~~aD~VI~t~p~  247 (399)
T 1v0j_A          206 AWLQNMAA---DHRIEVRLNTDWFDVRGQ-------L--R--PGSPAAPVVYTGPL  247 (399)
T ss_dssp             HHHHHHTC---STTEEEECSCCHHHHHHH-------H--T--TTSTTCCEEECSCH
T ss_pred             HHHHHHHh---cCCeEEEECCchhhhhhh-------h--h--hcccCCEEEECCcH
Confidence            99999886   458999999999999531       1  1  45 69999999864

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.71  E-value=1e-17  Score=151.72  Aligned_cols=222  Identities=14%  Similarity=0.149  Sum_probs=131.5

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcce-eccCcchhc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYN-VDMIPKFII   81 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~   81 (342)
                      ..+||+|||||++||++|++|+++|++|+|+|+++++||++.+....                   ..+. .+.+++.+.
T Consensus        28 ~~~dv~IIGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~-------------------~G~~~~~~G~~~~~   88 (397)
T 3hdq_A           28 KGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDD-------------------AGVLIHPYGPHIFH   88 (397)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECT-------------------TSCEECTTSCCCCE
T ss_pred             CCCCEEEECccHHHHHHHHHHHHCCCceEEEeccCCCCCccceeecc-------------------CCceEeecCCcccC
Confidence            46899999999999999999999999999999999999999977511                   1233 367777766


Q ss_pred             ccc-HHHHHHhhcCCcceeeEEE-cCceEEEeCCeEEecCCCcHH--HhcCCCCChhhHHHHHHHHHHHhhcCCCCcccc
Q 019351           82 ANG-ALVRVLIHTDVTKYLYFKA-VDGSFVYNKGKVHKVPATDME--ALKSPLMGIFEKRRARKFFIYVQDYDENDPKTH  157 (342)
Q Consensus        82 ~~~-~l~~~l~~~~~~~~l~~~~-~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~  157 (342)
                      ... .+.+.+.+...     +.. ....+.+.+|+++.+|.+...  .+....++.   .....++.. ....       
T Consensus        89 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~g~l~~lP~~~~~~~~l~~~~~~~---~~~~~~l~~-~~~~-------  152 (397)
T 3hdq_A           89 TNSKDVFEYLSRFTE-----WRPYQHRVLASVDGQLLPIPINLDTVNRLYGLNLTS---FQVEEFFAS-VAEK-------  152 (397)
T ss_dssp             ESCHHHHHHHHTSCC-----EEECCCBEEEEETTEEEEESCCHHHHHHHHTCCCCH---HHHHHHHHH-HCCC-------
T ss_pred             CChHHHHHHHHHhhh-----cccccccceEEECCEEEEcCCChHHHHHhhccCCCH---HHHHHHHhh-cccC-------
Confidence            444 44455544432     222 233455679999999975321  222212221   223333321 1110       


Q ss_pred             cccCCCCCcHHHHHHHcCCChhHHH-HHHhhh-hcccCCCCCCCchHHHHHHHHHHHHhhcccc---CCCce-EEeCCCC
Q 019351          158 EGMDLTRVTTRELIAKYGLDDNTID-FIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQ---GGSPY-IYPLYGL  231 (342)
Q Consensus       158 ~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~-~~~~gG~  231 (342)
                         ..+..++.+|+.+. +.+.+.+ ++.+.. +.+. .+...-++. .+.++..    ...+.   -...| .+|++|+
T Consensus       153 ---~~~~~s~~e~~~~~-~G~~~~e~~~~py~~k~~~-~~~~~Lsa~-~~~Rvp~----~~~~d~~yf~~~~qg~P~gGy  222 (397)
T 3hdq_A          153 ---VEQVRTSEDVVVSK-VGRDLYNKFFRGYTRKQWG-LDPSELDAS-VTARVPT----RTNRDNRYFADTYQAMPLHGY  222 (397)
T ss_dssp             ---CSSCCBHHHHHHHH-HHHHHHHHHTHHHHHHHHS-SCGGGSBTT-TGGGSCC----CSSCCCBSCCCSEEEEETTCH
T ss_pred             ---CCCCcCHHHHHHHh-cCHHHHHHHHHHHhCchhC-CCHHHHHHH-HHHhcCc----ccccCccchhhhheeccCCCH
Confidence               12578999998766 4444443 333333 2222 111111111 1111100    00110   12345 3799999


Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~  286 (342)
                      ..++..|++   ..|++|+++++|+++              +.++.+|+||+|+.
T Consensus       223 ~~l~e~l~~---~~g~~V~l~~~v~~~--------------~~~~~~d~vI~T~P  260 (397)
T 3hdq_A          223 TRMFQNMLS---SPNIKVMLNTDYREI--------------ADFIPFQHMIYTGP  260 (397)
T ss_dssp             HHHHHHHTC---STTEEEEESCCGGGT--------------TTTSCEEEEEECSC
T ss_pred             HHHHHHHHh---ccCCEEEECCeEEec--------------cccccCCEEEEcCC
Confidence            999988864   559999999999854              12345888988875

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.69  E-value=2.5e-17  Score=149.73  Aligned_cols=229  Identities=13%  Similarity=0.134  Sum_probs=132.1

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCccee-ccCcch
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPKF   79 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~   79 (342)
                      |++ +||+|||||++||++|+.|+++|++|+|+|+++++||++++.....                  ..+.+ +.++++
T Consensus         1 m~~-~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~------------------~g~~~~~~G~~~   61 (384)
T 2bi7_A            1 MKS-KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE------------------TNVMVHVYGPHI   61 (384)
T ss_dssp             -CC-CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT------------------TCCEEETTSCCC
T ss_pred             CCc-CCEEEECcCHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccC------------------CCceEeeCCceE
Confidence            554 7999999999999999999999999999999999999999875410                  12333 666666


Q ss_pred             hcccc-HHHHHHhhcCCcceeeEEEc-CceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccc
Q 019351           80 IIANG-ALVRVLIHTDVTKYLYFKAV-DGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTH  157 (342)
Q Consensus        80 ~~~~~-~l~~~l~~~~~~~~l~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~  157 (342)
                      +.... .+.+++.+.+.     +... ....++.+|..+.+|.+. ..+...+...+....+.+++.....   ..    
T Consensus        62 ~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~g~~~~~P~~~-~~~~~l~~~~~~~~~~~~~l~~~~~---~~----  128 (384)
T 2bi7_A           62 FHTDNETVWNYVNKHAE-----MMPYVNRVKATVNGQVFSLPINL-HTINQFFSKTCSPDEARALIAEKGD---ST----  128 (384)
T ss_dssp             EEESCHHHHHHHHTTSC-----EEECCCCEEEEETTEEEEESCCH-HHHHHHTTCCCCHHHHHHHHHHHSC---CS----
T ss_pred             ECCCCHHHHHHHHHHhh-----hcccccceEEEECCEEEECCCCh-hHHHHHhcccCCHHHHHHHHHHhhh---cc----
Confidence            65433 45555554432     1122 233455688888888652 2222111100012223333332221   10    


Q ss_pred             cccCCCCCcHHHHHHHcCCChhHHH-HHHhhh-hcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceE-EeCCCCChH
Q 019351          158 EGMDLTRVTTRELIAKYGLDDNTID-FIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI-YPLYGLGEL  234 (342)
Q Consensus       158 ~~~~~~~~s~~~~l~~~~~~~~~~~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~gG~~~l  234 (342)
                         ..+..++.+|+.+. +.+.+.+ ++.+.. +.+. ......+.... .++.........+ ....|. +|+||+..+
T Consensus       129 ---~~~~~sl~e~~~~~-~g~~~~~~~~~p~~~~~~~-~~~~~ls~~~~-~r~~~~~~~~~~~-~~~~~~~~p~gG~~~l  201 (384)
T 2bi7_A          129 ---IADPQTFEEEALRF-IGKELYEAFFKGYTIKQWG-MQPSELPASIL-KRLPVRFNYDDNY-FNHKFQGMPKCGYTQM  201 (384)
T ss_dssp             ---CSSCCBHHHHHHHH-HCHHHHHHHTHHHHHHHHS-SCGGGSBGGGC-CSCCCCSSSCCCS-CCCSEEEEETTHHHHH
T ss_pred             ---CCCCcCHHHHHHHh-hcHHHHHHHHHHHHHHHhC-CCHHHhCHHHH-hcccccccccccc-ccccccEEECcCHHHH
Confidence               12568999998876 5565554 333322 2222 11111111100 0000000000011 133454 999999999


Q ss_pred             HHHHHHHHHHcCcEEEcCCccc-eEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351          235 PQAFARLSAVYGGTYMLNKPEC-KVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       235 ~~~l~~~~~~~G~~i~~~~~V~-~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~  287 (342)
                      +++|++   ..|++|+++++|+ +|..                .||+||+|+..
T Consensus       202 ~~~l~~---~~g~~I~l~~~V~~~i~~----------------~~d~VI~a~p~  236 (384)
T 2bi7_A          202 IKSILN---HENIKVDLQREFIVEERT----------------HYDHVFYSGPL  236 (384)
T ss_dssp             HHHHHC---STTEEEEESCCCCGGGGG----------------GSSEEEECSCH
T ss_pred             HHHHHh---cCCCEEEECCeeehhhhc----------------cCCEEEEcCCH
Confidence            999886   4589999999999 8842                18999998853

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.69  E-value=1.7e-16  Score=148.53  Aligned_cols=244  Identities=14%  Similarity=0.124  Sum_probs=126.9

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcch
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKF   79 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~   79 (342)
                      |+..+||+|||||++||++|+.|+++|+ +|+|+|+++++||++.+....+                    +.+|.++++
T Consensus         1 ~~~~~~~~iiG~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~~~--------------------~~~d~g~~~   60 (472)
T 1b37_A            1 ATVGPRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFAG--------------------INVELGANW   60 (472)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEETT--------------------EEEESSCCE
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeecccCC--------------------cEEeeCCeE
Confidence            4556899999999999999999999998 8999999999999999886532                    445555555


Q ss_pred             hcc-----ccHHHHHHhh-cCCcceeeEEEcCceEEEe-CCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCC
Q 019351           80 IIA-----NGALVRVLIH-TDVTKYLYFKAVDGSFVYN-KGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDEN  152 (342)
Q Consensus        80 ~~~-----~~~l~~~l~~-~~~~~~l~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~  152 (342)
                      +..     ...+.+++.+ .++.............++. +|+.+..+  ....+.    ...  ..+..+...+..... 
T Consensus        61 ~~~~~~~~~~~~~~~~~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~~--~~~~~~----~~~--~~~~~~~~~~~~~~~-  131 (472)
T 1b37_A           61 VEGVNGGKMNPIWPIVNSTLKLRNFRSDFDYLAQNVYKEDGGVYDED--YVQKRI----ELA--DSVEEMGEKLSATLH-  131 (472)
T ss_dssp             EEEESSSSCCTHHHHHHTTSCCCEEECCCTTGGGCEECSSSSBCCHH--HHHHHH----HHH--HHHHHHHHHHHHTSC-
T ss_pred             EeccCCCCCCHHHHHHHhhcCCceeeccCccccceeEcCCCCCCCHH--HHHHHH----HHH--HHHHHHHHHHHHhhc-
Confidence            541     2345666666 4554331100001112232 44433211  000000    000  112222222211110 


Q ss_pred             CcccccccCCCCCcHHH--HHHHcCC--C-hhHHHHHHhhh-hcccCCCCCCCchHHHHHHHHHHHHhhccccCCCce-E
Q 019351          153 DPKTHEGMDLTRVTTRE--LIAKYGL--D-DNTIDFIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPY-I  225 (342)
Q Consensus       153 ~~~~~~~~~~~~~s~~~--~l~~~~~--~-~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~  225 (342)
                       +     ...++.++.+  ++.+...  . .....++.... ...........+....+ ....+    ..+ +...+ .
T Consensus       132 -~-----~~~~~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~~----~~~-~~~~~~~  199 (472)
T 1b37_A          132 -A-----SGRDDMSILAMQRLNEHQPNGPATPVDMVVDYYKFDYEFAEPPRVTSLQNTV-PLATF----SDF-GDDVYFV  199 (472)
T ss_dssp             -T-----TCTTCCBHHHHHHHHHTSSSSCCSHHHHHHHHHHTHHHHSSCGGGBBSTTTS-SCHHH----HHH-CSEEEEE
T ss_pred             -c-----ccchhhhHHHHHHHhhhcccccccHHHHHHHHHHHhhhhcccccccchhhcc-ccccc----ccc-CCceeee
Confidence             0     0124455543  4443321  1 11111222211 00000000000000000 00000    011 22222 2


Q ss_pred             EeCCCCChHHHHHHHHHHHc--------CcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351          226 YPLYGLGELPQAFARLSAVY--------GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (342)
Q Consensus       226 ~~~gG~~~l~~~l~~~~~~~--------G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~  287 (342)
                      .+++|+..+++.|++.+...        |++|+++++|++|..+ ++++. |++ +|+++.||+||+|++.
T Consensus       200 ~~~gG~~~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~-~~~v~-v~~~~g~~~~ad~vI~a~~~  268 (472)
T 1b37_A          200 ADQRGYEAVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYS-PGGVT-VKTEDNSVYSADYVMVSASL  268 (472)
T ss_dssp             CCTTCTTHHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEEC-SSCEE-EEETTSCEEEESEEEECSCH
T ss_pred             ecCCcHHHHHHHHHHhccccccccccccccEEEcCCEEEEEEEc-CCcEE-EEECCCCEEEcCEEEEecCH
Confidence            34799999999999876654        7899999999999987 66655 555 6778999999999874

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.61  E-value=5.1e-16  Score=140.34  Aligned_cols=228  Identities=15%  Similarity=0.157  Sum_probs=130.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCccee-ccCcchhcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNV-DMIPKFIIA   82 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~-~~~~~~~~~   82 (342)
                      ++||+|||||++||++|++|+++|++|+|+|+++++||++.+....                    .+.+ +.+++++..
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~--------------------g~~~~~~G~~~~~~   60 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCE--------------------GIQIHKYGAHIFHT   60 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEET--------------------TEEEETTSCCCEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeeccC--------------------CceeeccCCceecC
Confidence            3799999999999999999999999999999999999999987542                    2445 366666654


Q ss_pred             cc-HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccC
Q 019351           83 NG-ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMD  161 (342)
Q Consensus        83 ~~-~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
                      .. .+.+.+.+.+.  ...+  ......+.+|+.+.+|.+ ...+...+.. ..+..+..++.......   .      .
T Consensus        61 ~~~~~~~~~~~l~~--~~~~--~~~~~~~~~g~~~~~p~~-~~~~~~l~~~-~~~~~~~~~l~~~~~~~---~------~  125 (367)
T 1i8t_A           61 NDKYIWDYVNDLVE--FNRF--TNSPLAIYKDKLFNLPFN-MNTFHQMWGV-KDPQEAQNIINAQKKKY---G------D  125 (367)
T ss_dssp             SCHHHHHHHHTTSC--BCCC--CCCCEEEETTEEEESSBS-HHHHHHHHCC-CCHHHHHHHHHHHTTTT---C------C
T ss_pred             CCHHHHHHHHHhhh--hhhc--cccceEEECCeEEEcCCC-HHHHHHHhcc-CCHHHHHHHHHHHhhcc---C------C
Confidence            33 44444433322  1111  122334558888888764 2222110000 01223333433332210   0      1


Q ss_pred             CCCCcHHHHHHHcCCChhHHH-HHHhhh-hcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceE-EeCCCCChHHHHH
Q 019351          162 LTRVTTRELIAKYGLDDNTID-FIGHAL-ALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYI-YPLYGLGELPQAF  238 (342)
Q Consensus       162 ~~~~s~~~~l~~~~~~~~~~~-~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~gG~~~l~~~l  238 (342)
                      .+..++.+|+.+. +.+.+.+ ++.+.. +.+... ....++... .++......-..+ ....|. +|+||+..++++|
T Consensus       126 ~~~~s~~~~~~~~-~g~~~~~~~~~p~~~~~~~~~-~~~lsa~~~-~~l~~~~~~~~~~-~~~~~~~~p~gG~~~l~~~l  201 (367)
T 1i8t_A          126 KVPENLEEQAISL-VGEDLYQALIKGYTEKQWGRS-AKELPAFII-KRIPVRFTFDNNY-FSDRYQGIPVGGYTKLIEKM  201 (367)
T ss_dssp             CCCCSHHHHHHHH-HHHHHHHHHTHHHHHHHHSSC-GGGSCTTSS-CCCCBCSSSCCCS-CCCSEEECBTTCHHHHHHHH
T ss_pred             CCCccHHHHHHHH-HhHHHHHHHHHHHHhhhhCCC-hHHcCHHHH-hhceeeecccccc-ccchhhcccCCCHHHHHHHH
Confidence            2468999998876 5555544 333332 222211 101111100 0000000000001 123454 8999999999998


Q ss_pred             HHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351          239 ARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       239 ~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~  287 (342)
                      ++     |++|+++++|++|..    ++        .+.||+||+|+..
T Consensus       202 ~~-----g~~i~l~~~V~~i~~----~v--------~~~~D~VV~a~p~  233 (367)
T 1i8t_A          202 LE-----GVDVKLGIDFLKDKD----SL--------ASKAHRIIYTGPI  233 (367)
T ss_dssp             HT-----TSEEECSCCGGGSHH----HH--------HTTEEEEEECSCH
T ss_pred             hc-----CCEEEeCCceeeech----hh--------hccCCEEEEeccH
Confidence            86     799999999999852    11        2468999998854

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=99.60  E-value=2.7e-15  Score=135.49  Aligned_cols=58  Identities=10%  Similarity=0.085  Sum_probs=48.0

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--cEEEcCEEEECCCCCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYLP  289 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g--~~~~a~~vI~~~~~~~  289 (342)
                      ...+...|.+.+++.|++|+++++|++|..+ +++.+.|.+ +|  .++.||.||+|+|.+.
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~~~~a~~VV~A~G~~s  209 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVR-PEGGFELDFGGAEPMTLSCRVLINAAGLHA  209 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-TTSSEEEEECTTSCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEc-CCceEEEEECCCceeEEEeCEEEECCCcch
Confidence            4578899999999999999999999999987 444344666 44  3899999999999875

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=99.60  E-value=1.3e-14  Score=134.44  Aligned_cols=59  Identities=14%  Similarity=0.170  Sum_probs=51.1

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCC---ccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNK---PECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~---~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      ...++..|.+.++++|++|++++   +|++|..+ ++++.+|++ +|.+++||+||+|+|.+..
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~~G~~i~Ad~VV~AtG~~s~  222 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTADGKIWRAERTFLCAGASAG  222 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEETTTEEEECSEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEECCCCEEECCEEEECCCCChh
Confidence            45789999999999999999999   99999987 777887888 5558999999999998754

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=99.59  E-value=4.8e-14  Score=127.90  Aligned_cols=58  Identities=14%  Similarity=0.127  Sum_probs=50.4

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ...++.+|.+.++++|++|+++++|++|..+ +++ +.|+++++++.||+||+|+|.+..
T Consensus       153 ~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~-~~V~t~~g~i~a~~VV~A~G~~s~  210 (381)
T 3nyc_A          153 TDALHQGYLRGIRRNQGQVLCNHEALEIRRV-DGA-WEVRCDAGSYRAAVLVNAAGAWCD  210 (381)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSCCCCEEEEE-TTE-EEEECSSEEEEESEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEEe-CCe-EEEEeCCCEEEcCEEEECCChhHH
Confidence            3688999999999999999999999999987 555 678886669999999999998753

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=99.54  E-value=1.6e-13  Score=124.67  Aligned_cols=79  Identities=19%  Similarity=0.183  Sum_probs=60.0

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccc------c--ccceeEEEE
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV------R--KVGRVARAI  302 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~------~--~~~~~~~~~  302 (342)
                      ...+...|.+.+++.|++|+++++|++|..+ ++++.+|++++++++||.||+|+|.++..+      .  ......+..
T Consensus       148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~~g~i~a~~VV~A~G~~s~~l~~~~g~~~~~~~~~~~g~  226 (382)
T 1y56_B          148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTNKGIIKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQ  226 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTEEEECSEEEECCGGGHHHHHHHHTCCSCCCCEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCEEECCceEEEEEEE-CCEEEEEEECCcEEECCEEEECcchhHHHHHHHcCCCcCcCCCeeEeE
Confidence            3578889999999999999999999999987 677776878666899999999999875321      1  122455666


Q ss_pred             EEecCCCC
Q 019351          303 AIMSHPIP  310 (342)
Q Consensus       303 ~i~~~~l~  310 (342)
                      ++..++..
T Consensus       227 ~~~~~~~~  234 (382)
T 1y56_B          227 AVITQPIK  234 (382)
T ss_dssp             EEEECCCS
T ss_pred             EEEEccCC
Confidence            66655543

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.52  E-value=1.6e-13  Score=134.43  Aligned_cols=44  Identities=25%  Similarity=0.321  Sum_probs=41.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN   47 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~   47 (342)
                      .+||+|||||++||+||+.|+++|++|+|+|+++++||++++..
T Consensus       336 ~~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~  379 (776)
T 4gut_A          336 NKSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDK  379 (776)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeecc
Confidence            47999999999999999999999999999999999999998874

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=99.50  E-value=2.9e-13  Score=131.97  Aligned_cols=58  Identities=12%  Similarity=-0.037  Sum_probs=49.8

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      ...++..|.+.+++.|++|+++++|++|..+ +++ +.|++ +|+++.||.||+|+|.+..
T Consensus       416 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~-v~V~t~~G~~i~Ad~VVlAtG~~s~  474 (676)
T 3ps9_A          416 PAELTRNVLELAQQQGLQIYYQYQLQNFSRK-DDC-WLLNFAGDQQATHSVVVLANGHQIS  474 (676)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeeeEEEEe-CCe-EEEEECCCCEEECCEEEECCCcchh
Confidence            3688999999999999999999999999987 665 46666 6788999999999998754

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=99.49  E-value=5.7e-13  Score=132.78  Aligned_cols=78  Identities=17%  Similarity=0.155  Sum_probs=59.7

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccc------cccceeEEEEEE
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV------RKVGRVARAIAI  304 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~------~~~~~~~~~~~i  304 (342)
                      ...++..|++.+++.|++|+++++|++|..+ ++++++|.+++++++||+||+|+|.+...+      .....+.+..++
T Consensus       150 p~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~~G~i~Ad~VV~AaG~~s~~l~~~~g~~~pl~p~~g~~~  228 (830)
T 1pj5_A          150 AARAVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADGVIPADIVVSCAGFWGAKIGAMIGMAVPLLPLAHQYV  228 (830)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTEEEECSEEEECCGGGHHHHHHTTTCCCCCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCEEECCceEEEEEEe-CCEEEEEEECCcEEECCEEEECCccchHHHHHHhCCCccceeceeEEE
Confidence            3478999999999999999999999999887 677778888767999999999999885321      112234455555


Q ss_pred             ecCCC
Q 019351          305 MSHPI  309 (342)
Q Consensus       305 ~~~~l  309 (342)
                      ++.|.
T Consensus       229 ~~~~~  233 (830)
T 1pj5_A          229 KTTPV  233 (830)
T ss_dssp             EESCC
T ss_pred             EEecC
Confidence            55554

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=99.48  E-value=8.1e-13  Score=118.22  Aligned_cols=58  Identities=12%  Similarity=0.229  Sum_probs=47.4

Q ss_pred             eEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCC
Q 019351          224 YIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (342)
Q Consensus       224 ~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~  286 (342)
                      .+...+|+..+++.|++.+   |++|+++++|++|..+ ++++. |++ +|.++.||.||+|++
T Consensus       104 ~~~~~~g~~~l~~~l~~~~---g~~i~~~~~V~~i~~~-~~~~~-v~~~~g~~~~ad~vV~A~p  162 (342)
T 3qj4_A          104 NFVAPQGISSIIKHYLKES---GAEVYFRHRVTQINLR-DDKWE-VSKQTGSPEQFDLIVLTMP  162 (342)
T ss_dssp             EEECTTCTTHHHHHHHHHH---TCEEESSCCEEEEEEC-SSSEE-EEESSSCCEEESEEEECSC
T ss_pred             ceecCCCHHHHHHHHHHhc---CCEEEeCCEEEEEEEc-CCEEE-EEECCCCEEEcCEEEECCC
Confidence            3456789999999988754   8999999999999987 56654 555 666799999999986

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=99.47  E-value=6.8e-13  Score=121.18  Aligned_cols=56  Identities=21%  Similarity=0.140  Sum_probs=47.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++.|++|+++++|++|..+ ++++ .|++++++++||.||+|+|.+.
T Consensus       153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~v-~v~t~~g~i~a~~VV~A~G~~s  208 (397)
T 2oln_A          153 RGTLAALFTLAQAAGATLRAGETVTELVPD-ADGV-SVTTDRGTYRAGKVVLACGPYT  208 (397)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEE-TTEE-EEEESSCEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEc-CCeE-EEEECCCEEEcCEEEEcCCcCh
Confidence            478889999999999999999999999876 5554 4667667899999999999874

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=99.47  E-value=6.9e-13  Score=129.51  Aligned_cols=73  Identities=11%  Similarity=0.013  Sum_probs=54.5

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCc-EEEcCEEEECCCCCCcccc----ccceeEEEEEE
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-TAKCKKVVCDPSYLPNKVR----KVGRVARAIAI  304 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~-~~~a~~vI~~~~~~~~~~~----~~~~~~~~~~i  304 (342)
                      ...++..|.+.+++.|++|+++++|++|..+ +++ +.|.+ +|+ +++||.||+|+|.+...+.    ....+.|..++
T Consensus       411 p~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~-~~~-v~V~t~~G~~~i~Ad~VVlAtG~~s~~l~~~~~lpl~p~rGq~~  488 (689)
T 3pvc_A          411 PSDLTHALMMLAQQNGMTCHYQHELQRLKRI-DSQ-WQLTFGQSQAAKHHATVILATGHRLPEWEQTHHLPLSAVRGQVS  488 (689)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEC-SSS-EEEEEC-CCCCEEESEEEECCGGGTTCSTTTTTSCCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCeEeEEEEe-CCe-EEEEeCCCcEEEECCEEEECCCcchhccccccCCccccccCcEE
Confidence            3688999999999999999999999999987 566 45666 555 8999999999998754321    12245565554


Q ss_pred             e
Q 019351          305 M  305 (342)
Q Consensus       305 ~  305 (342)
                      .
T Consensus       489 ~  489 (689)
T 3pvc_A          489 H  489 (689)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=99.47  E-value=7.7e-13  Score=121.22  Aligned_cols=63  Identities=13%  Similarity=0.048  Sum_probs=50.8

Q ss_pred             EEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          225 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       225 ~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      .++......+.+.|.+.+++.|++|+++++|++|..+ ++. +.|+++++++.||.||+|+|.++
T Consensus       125 ~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~-~~~-~~V~~~~g~i~ad~VIlAtG~~S  187 (417)
T 3v76_A          125 LFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERT-ASG-FRVTTSAGTVDAASLVVASGGKS  187 (417)
T ss_dssp             EEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTE-EEEEETTEEEEESEEEECCCCSS
T ss_pred             EeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCE-EEEEECCcEEEeeEEEECCCCcc
Confidence            3454445678889999999999999999999999876 554 56777555999999999998664

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=99.43  E-value=1.9e-12  Score=118.41  Aligned_cols=64  Identities=25%  Similarity=0.193  Sum_probs=52.9

Q ss_pred             EEeCCCC---ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          225 IYPLYGL---GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       225 ~~~~gG~---~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      +++.+|.   ..+...|.+.+++.|++|+++++|++|..+ +++++.|+++++++.||.||+|+|.+.
T Consensus       164 ~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~~g~~~a~~vV~a~G~~s  230 (405)
T 2gag_B          164 WQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTTRGTIHAGKVALAGAGHS  230 (405)
T ss_dssp             EETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEETTCCEEEEEEEECCGGGH
T ss_pred             EeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeCCceEECCEEEECCchhH
Confidence            3444443   378889999999999999999999999987 677778888555899999999999875

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.42  E-value=8e-12  Score=121.31  Aligned_cols=45  Identities=22%  Similarity=0.384  Sum_probs=42.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccch
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNL   48 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~   48 (342)
                      .+||+|||||++||+||+.|+++|++|+|+|+++++||++.+++.
T Consensus       107 ~~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~~  151 (662)
T 2z3y_A          107 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRK  151 (662)
T ss_dssp             CCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEE
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccccccc
Confidence            479999999999999999999999999999999999999988764

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.41  E-value=9.6e-12  Score=122.80  Aligned_cols=45  Identities=22%  Similarity=0.384  Sum_probs=42.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccch
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNL   48 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~   48 (342)
                      ..||+|||||++||+||++|+++|++|+|||+++++||++.++..
T Consensus       278 ~~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~  322 (852)
T 2xag_A          278 TGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRK  322 (852)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEEE
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceeeecc
Confidence            479999999999999999999999999999999999999988764

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=99.41  E-value=2.7e-12  Score=116.05  Aligned_cols=57  Identities=14%  Similarity=0.194  Sum_probs=48.0

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..++..|.+.+++.|++|+++++|++|..+ +++ +.|++++++++||+||+|+|.+..
T Consensus       149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~-~~v~~~~g~~~a~~vV~a~G~~s~  205 (372)
T 2uzz_A          149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHD-DDG-VTIETADGEYQAKKAIVCAGTWVK  205 (372)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSS-EEEEESSCEEEEEEEEECCGGGGG
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEc-CCE-EEEEECCCeEEcCEEEEcCCccHH
Confidence            578899999999999999999999999886 555 456676567999999999998753

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=99.40  E-value=9.2e-12  Score=113.20  Aligned_cols=75  Identities=9%  Similarity=0.105  Sum_probs=56.4

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCccc-c-----ccceeEEEEEEe
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV-R-----KVGRVARAIAIM  305 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~-~-----~~~~~~~~~~i~  305 (342)
                      ..++..|.+.+++.|++|+++++|++|+.+ +++ +.|++++++++||.||+|+|.++..+ .     ....+.+..++.
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~~a~~vV~A~G~~~~~l~~~~g~~~pl~~~rg~~~~  227 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDS-VKIETANGSYTADKLIVSMGAWNSKLLSKLNLDIPLQPYRQVVGF  227 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSC-EEEEETTEEEEEEEEEECCGGGHHHHGGGGTEECCCEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEec-CCe-EEEEeCCCEEEeCEEEEecCccHHHHhhhhccCCceEEEEEEEEE
Confidence            578899999999999999999999999886 555 45667666899999999999875322 1     123455666555


Q ss_pred             cCC
Q 019351          306 SHP  308 (342)
Q Consensus       306 ~~~  308 (342)
                      .++
T Consensus       228 ~~~  230 (389)
T 2gf3_A          228 FES  230 (389)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            443

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=99.39  E-value=6.1e-12  Score=116.75  Aligned_cols=59  Identities=15%  Similarity=0.208  Sum_probs=50.0

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEE---------------cCCCcEEEEEeCCcEE--EcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEF---------------DEEGKVVGVTSEGETA--KCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~---------------~~~~~~~~v~~~g~~~--~a~~vI~~~~~~~~  290 (342)
                      ...++..|.+.+++.|++|+++++|++|..               + +++++.|.++++++  .||.||+|+|.+..
T Consensus       180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~-~~~v~~V~t~~g~i~~~Ad~VV~AtG~~s~  255 (448)
T 3axb_A          180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQ-EARASAAVLSDGTRVEVGEKLVVAAGVWSN  255 (448)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTS-CEEEEEEEETTSCEEEEEEEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccC-CCceEEEEeCCCEEeecCCEEEECCCcCHH
Confidence            347899999999999999999999999987               5 56677787755588  99999999998753

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=99.38  E-value=1.7e-12  Score=123.48  Aligned_cols=59  Identities=24%  Similarity=0.241  Sum_probs=50.4

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC----C--cEEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE----G--ETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~----g--~~~~a~~vI~~~~~~~~  290 (342)
                      ...++..|++.+++.|++|+++++|++|..+ ++++++|++.    |  .+++||.||+|+|.|.+
T Consensus       169 ~~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A~~VV~AaG~~s~  233 (561)
T 3da1_A          169 DARLTLEIMKEAVARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYAKKVVNAAGPWVD  233 (561)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEECCEEEECCCcchH
Confidence            4678899999999999999999999999987 7777777752    3  47999999999998853

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=99.38  E-value=4.7e-12  Score=119.41  Aligned_cols=57  Identities=18%  Similarity=0.265  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCc--EEEcC-EEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGE--TAKCK-KVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~--~~~a~-~vI~~~~~~~  289 (342)
                      .+...|.+.+++.|++|+++++|++|..++++++++|..  +++  +++|+ .||+|+|-+.
T Consensus       203 ~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~  264 (510)
T 4at0_A          203 MLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFA  264 (510)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChh
Confidence            789999999999999999999999998864578887766  343  58995 8999887553

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.38  E-value=2.4e-13  Score=130.85  Aligned_cols=65  Identities=11%  Similarity=-0.015  Sum_probs=48.7

Q ss_pred             CCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccc--eEEEcCCC------cEEEEEe-CCc--EEEcCEEEECCC
Q 019351          221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPEC--KVEFDEEG------KVVGVTS-EGE--TAKCKKVVCDPS  286 (342)
Q Consensus       221 ~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~--~i~~~~~~------~~~~v~~-~g~--~~~a~~vI~~~~  286 (342)
                      ...+.++.||+..++++|++.+.. |..|+++++|+  +|.+++++      .+.+..+ +|.  +++||+||+|++
T Consensus       336 ~~~~~~i~GG~~~L~~aLa~~l~~-g~~I~l~~~V~~~~I~~~~~g~~~~~~~V~V~~~~~G~~~~~~aD~VIvTvP  411 (721)
T 3ayj_A          336 SNEYTLPVTENVEFIRNLFLKAQN-VGAGKLVVQVRQERVANACHSGTASARAQLLSYDSHNAVHSEAYDFVILAVP  411 (721)
T ss_dssp             TCEECCSSSSTHHHHHHHHHHHHH-HTTTSEEEEEECEEEEEEEECSSSSCCEEEEEEETTCCEEEEEESEEEECSC
T ss_pred             ccceeEECCcHHHHHHHHHHhccc-CCceEeCCEEEeeeEEECCCCCccccceEEEEEecCCceEEEEcCEEEECCC
Confidence            445678899999999999987643 67789999999  99876233      2433233 565  799999999764

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=99.36  E-value=9.4e-12  Score=113.55  Aligned_cols=63  Identities=14%  Similarity=0.219  Sum_probs=48.5

Q ss_pred             EeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcC---CCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDE---EGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       226 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~---~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      +|......+.+.|.+.+++.|++|+++++|++|..++   +++ +.|++++++++||.||+|+|.++
T Consensus       103 ~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g~i~ad~VVlAtG~~s  168 (401)
T 2gqf_A          103 FCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQVNSTQWQCKNLIVATGGLS  168 (401)
T ss_dssp             EETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEEETTEEEEESEEEECCCCSS
T ss_pred             ccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEEECCCEEECCEEEECCCCcc
Confidence            3433345778888898889999999999999998641   233 56677666899999999998765

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=99.36  E-value=4.5e-12  Score=117.53  Aligned_cols=58  Identities=19%  Similarity=0.192  Sum_probs=49.3

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      ...+.+.|.+.+++.|++|+++++|++|..+ ++++++|++ +|.+++||.||+|+|.++
T Consensus       133 ~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~~G~~i~Ad~VVlAtGg~s  191 (447)
T 2i0z_A          133 AQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIAVGGKS  191 (447)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEECCCCSS
T ss_pred             HHHHHHHHHHHHHHCCCEEEeCcEEEEEEec-CCcEEEEEECCCCEEECCEEEECCCCCc
Confidence            4678889999999999999999999999876 677777877 555699999999998664

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=99.34  E-value=5.3e-12  Score=114.52  Aligned_cols=65  Identities=12%  Similarity=0.068  Sum_probs=52.5

Q ss_pred             eEEeCCCC---ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          224 YIYPLYGL---GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       224 ~~~~~gG~---~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ++++.+|.   ..+...|.+.+++.|++|+++++|++|..+ ++++ .|+++++++.||.||+|+|.+..
T Consensus       153 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~~~g~~~a~~vV~A~G~~s~  220 (382)
T 1ryi_A          153 SFIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD-GEAL-FIKTPSGDVWANHVVVASGVWSG  220 (382)
T ss_dssp             EEETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS-SSSE-EEEETTEEEEEEEEEECCGGGTH
T ss_pred             EEeCCCeEEcHHHHHHHHHHHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEcCCceEEcCEEEECCChhHH
Confidence            34555552   578899999999999999999999999876 5665 67776668999999999998754

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=99.32  E-value=2.2e-12  Score=123.02  Aligned_cols=59  Identities=17%  Similarity=0.160  Sum_probs=49.1

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~~~~  290 (342)
                      ...++..+++.+++.|++|+.+++|++|..+ ++++++|+.    +++  +++||.||+|+|.|..
T Consensus       187 ~~~l~~~l~~~a~~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~~tg~~~~i~A~~VV~AaG~ws~  251 (571)
T 2rgh_A          187 DARLVIDNIKKAAEDGAYLVSKMKAVGFLYE-GDQIVGVKARDLLTDEVIEIKAKLVINTSGPWVD  251 (571)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEBSCEEECCGGGHH
T ss_pred             hHHHHHHHHHHHHHcCCeEEeccEEEEEEEe-CCEEEEEEEEEcCCCCEEEEEcCEEEECCChhHH
Confidence            3468888999999999999999999999987 677777763    233  7999999999998853

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=99.30  E-value=1.5e-10  Score=110.58  Aligned_cols=57  Identities=16%  Similarity=0.107  Sum_probs=47.0

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CCc--EEEcCEEEECCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSYL  288 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~---~g~--~~~a~~vI~~~~~~  288 (342)
                      ..+...|.+.+++.|++|+++++|++|..++++++++|+.   +|+  ++.||.||+|+|.+
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~  316 (571)
T 1y0p_A          255 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGF  316 (571)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCc
Confidence            4788899999999999999999999998872377776654   454  68999999998764

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=99.30  E-value=3.8e-12  Score=115.75  Aligned_cols=56  Identities=21%  Similarity=0.336  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CC--cEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EG--ETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g--~~~~a~~vI~~~~~~~  289 (342)
                      .+-..|++.+++.|++++++++|+.+..+ ++++.++..  ++  .+++||.||.|.|..+
T Consensus       103 ~~~~~L~~~a~~~G~~~~~~~~v~~~~~~-~~~~~~v~~~~~~~~~~~~a~~vIgAdG~~S  162 (397)
T 3oz2_A          103 KFDKHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIRHNNEIVDVRAKMVIAADGFES  162 (397)
T ss_dssp             HHHHHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhcCcEEeeeeeeeeeeec-cceeeeeeecccccceEEEEeEEEeCCcccc
Confidence            45556778888889999999999999887 777766654  34  3689999999998764

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=99.30  E-value=1.6e-11  Score=115.65  Aligned_cols=58  Identities=19%  Similarity=0.280  Sum_probs=49.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...|.+.+++.|++|+++++|++|..+ ++++++|++ +|+++.||.||+|+|.++.
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~-~~~v~gV~l~~G~~i~Ad~VVlA~G~~s~  278 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHME-DGQITGVTLSNGEEIKSRHVVLAVGHSAR  278 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEES-SSBEEEEEETTSCEEECSCEEECCCTTCH
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCChh
Confidence            356777888888899999999999999987 677887877 5678999999999998863

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=99.29  E-value=2.5e-12  Score=110.82  Aligned_cols=46  Identities=24%  Similarity=0.304  Sum_probs=42.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchH
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI   49 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~   49 (342)
                      .+||+|||||++||+||+.|+++|++|+||||++.+||++.+....
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~~~   47 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKRSD   47 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEEET
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccccC
Confidence            3799999999999999999999999999999999999999877543

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=99.29  E-value=7.8e-11  Score=112.43  Aligned_cols=57  Identities=19%  Similarity=0.156  Sum_probs=47.4

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCC-CcEEEEEe---CCc--EEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTS---EGE--TAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~-~~~~~v~~---~g~--~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++.|++|+++++|++|..+ + +++++|+.   +|+  ++.||.||+|+|.+.
T Consensus       250 ~~l~~~L~~~~~~~gv~i~~~~~v~~l~~~-~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s  312 (566)
T 1qo8_A          250 PEIIDTLRKAAKEQGIDTRLNSRVVKLVVN-DDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYG  312 (566)
T ss_dssp             HHHHHHHHHHHHHTTCCEECSEEEEEEEEC-TTSBEEEEEEEETTTEEEEEEEEEEEECCCCCT
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEC-CCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcc
Confidence            468889999999999999999999999887 6 78776654   454  689999999987553

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=99.26  E-value=2.2e-11  Score=114.55  Aligned_cols=58  Identities=14%  Similarity=0.106  Sum_probs=48.9

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~~~~  290 (342)
                      ...++..|++.+++.|++|+++++|++|..+ + ++++|++    +|+  +++||.||+|+|.|..
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~-~-~~~~V~~~d~~~G~~~~i~A~~VV~AtG~~s~  211 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARRE-N-GLWIVEAEDIDTGKKYSWQARGLVNATGPWVK  211 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEE-T-TEEEEEEEETTTCCEEEEEESCEEECCGGGHH
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEe-C-CEEEEEEEECCCCCEEEEECCEEEECCChhHH
Confidence            4678999999999999999999999999886 4 5666765    454  7999999999998854

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=99.26  E-value=2.7e-11  Score=111.35  Aligned_cols=57  Identities=12%  Similarity=0.173  Sum_probs=44.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcE-EEEEe-CCc--EEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKV-VGVTS-EGE--TAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~-~~v~~-~g~--~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++.|++|+++++|++|..+ ++++ +.+.+ +|.  +++||.||.|+|.++
T Consensus       106 ~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~~~v~v~~~~g~~~~~~a~~vV~A~G~~s  166 (421)
T 3nix_A          106 GNFDKTLADEAARQGVDVEYEVGVTDIKFF-GTDSVTTIEDINGNKREIEARFIIDASGYGR  166 (421)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEETTSCEEEEEEEEEEECCGGGC
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEcCCCCEEEEEcCEEEECCCCch
Confidence            356677788888889999999999999887 4433 44554 565  699999999999775

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=99.21  E-value=5.5e-11  Score=113.55  Aligned_cols=57  Identities=18%  Similarity=0.098  Sum_probs=46.4

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CC--cEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EG--ETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g--~~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++.|++++++++|++|..+ +++++.|++  +|  .++.||.||.|+|..+
T Consensus       128 ~~l~~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~~G~~~~i~AdlVV~AdG~~S  188 (591)
T 3i3l_A          128 EEFDKLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRRGGESVTVESDFVIDAGGSGG  188 (591)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEETTEEEEEEESEEEECCGGGC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEecCCceEEEEcCEEEECCCCcc
Confidence            356777888888899999999999999876 555566665  45  4799999999999875

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=99.20  E-value=2.5e-10  Score=109.12  Aligned_cols=57  Identities=19%  Similarity=0.152  Sum_probs=45.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYL  288 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~~  288 (342)
                      ..+...|.+.+++.|++|++++.|++|..++++++++|..    +|+  ++.|+.||+|+|-+
T Consensus       143 ~~l~~~L~~~~~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~  205 (588)
T 2wdq_A          143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGA  205 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCC
Confidence            4678889999999999999999999998742567777663    344  58999999988753

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=99.15  E-value=3.2e-10  Score=108.64  Aligned_cols=56  Identities=18%  Similarity=0.265  Sum_probs=46.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYL  288 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~~  288 (342)
                      ..+...|.+.+++.|++|++++.|++|..+ ++++.+|..    +|+  .+.|+.||+|+|-+
T Consensus       155 ~~l~~~L~~~~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  216 (621)
T 2h88_A          155 HSLLHTLYGRSLRYDTSYFVEYFALDLLME-NGECRGVIALCIEDGTIHRFRAKNTVIATGGY  216 (621)
T ss_dssp             HHHHHHHHHHHTTSCCEEEETEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEEEEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEEceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCcc
Confidence            368889999998899999999999999877 777777664    344  68999999988743

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=99.15  E-value=1.9e-10  Score=105.29  Aligned_cols=55  Identities=15%  Similarity=0.128  Sum_probs=42.8

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+.+.|.+.+++  ++|+++++|++|+.+ ++++.....+|+++.||.||.|.|.++
T Consensus       127 ~~l~~~L~~~~~~--~~i~~~~~v~~i~~~-~~~v~v~~~~g~~~~a~~vV~AdG~~S  181 (407)
T 3rp8_A          127 AELQREMLDYWGR--DSVQFGKRVTRCEED-ADGVTVWFTDGSSASGDLLIAADGSHS  181 (407)
T ss_dssp             HHHHHHHHHHHCG--GGEEESCCEEEEEEE-TTEEEEEETTSCEEEESEEEECCCTTC
T ss_pred             HHHHHHHHHhCCc--CEEEECCEEEEEEec-CCcEEEEEcCCCEEeeCEEEECCCcCh
Confidence            3566667777665  899999999999987 565543344788999999999999875

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=99.14  E-value=2.5e-09  Score=102.07  Aligned_cols=57  Identities=23%  Similarity=0.202  Sum_probs=46.4

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCC-CcEEEEEe---CCc--EEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTS---EGE--TAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~-~~~~~v~~---~g~--~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++.|++|+++++|++|..+ + +++++|..   +|+  ++.||.||+|+|-++
T Consensus       255 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~-~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~  317 (572)
T 1d4d_A          255 AHVAQVLWDNAVKRGTDIRLNSRVVRILED-ASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFA  317 (572)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEEC---CCEEEEEEEETTTEEEEEECSEEEECCCCCT
T ss_pred             HHHHHHHHHHHHHcCCeEEecCEEEEEEEC-CCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCc
Confidence            467889999999999999999999999877 5 77777664   454  689999999987543

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=99.14  E-value=5.6e-10  Score=104.82  Aligned_cols=55  Identities=13%  Similarity=0.001  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCc---EEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE---TAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~---~~~a~~vI~~~~~~~  289 (342)
                      .+...|.+.+++.|++|+++++|++++.+ ++++. ++. ++.   +++||.||.|.|..+
T Consensus       107 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~-v~~~~~~g~~~~~a~~vVgADG~~S  165 (500)
T 2qa1_A          107 VTETHLEQWATGLGADIRRGHEVLSLTDD-GAGVT-VEVRGPEGKHTLRAAYLVGCDGGRS  165 (500)
T ss_dssp             HHHHHHHHHHHHTTCEEEETCEEEEEEEE-TTEEE-EEEEETTEEEEEEESEEEECCCTTC
T ss_pred             HHHHHHHHHHHHCCCEEECCcEEEEEEEc-CCeEE-EEEEcCCCCEEEEeCEEEECCCcch
Confidence            45667778888889999999999999987 55554 444 443   799999999998764

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=99.14  E-value=3.8e-10  Score=104.75  Aligned_cols=56  Identities=23%  Similarity=0.144  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~~~  289 (342)
                      .+.+.|.+.+++.|++|+++++|+++..+ ++++++|+.    +|+  +++||.||.|.|..+
T Consensus       101 ~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s  162 (453)
T 3atr_A          101 LYNQRVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR  162 (453)
T ss_dssp             HHHHHHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence            45667778888889999999999999887 677665543    454  799999999998764

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=99.13  E-value=6.7e-11  Score=108.26  Aligned_cols=56  Identities=14%  Similarity=0.137  Sum_probs=43.4

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccc---------eEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPEC---------KVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~---------~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++.|++++++++|+         +|..+ ++++ .|+++++++.||.||+|+|.+.
T Consensus       172 ~~l~~~L~~~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~~~g~i~a~~VV~A~G~~s  236 (405)
T 3c4n_A          172 GSLALLAAQQAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVHETRQIRAGVIIVAAGAAG  236 (405)
T ss_dssp             HHHHHHHHHHHHTTTCEEECSCEEEEETTEEEEECBCC---------CBCCEEEEEEEEEECCGGGH
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEECCcEEECCEEEECCCccH
Confidence            5688899999999999999999999         88765 5555 6777666899999999999875

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=99.12  E-value=6.5e-10  Score=101.42  Aligned_cols=56  Identities=14%  Similarity=0.072  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEE-EEEe-CCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVV-GVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~-~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      .+.+.|.+.+++. |++|+++++|++|+.+ +++++ .|++ +|.+++||.||.|.|.++
T Consensus       108 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~-~~~v~g~v~~~~g~~~~ad~vV~AdG~~s  166 (399)
T 2x3n_A          108 SLRRLVLEKIDGEATVEMLFETRIEAVQRD-ERHAIDQVRLNDGRVLRPRVVVGADGIAS  166 (399)
T ss_dssp             HHHHHHHHHHTTCTTEEEECSCCEEEEEEC-TTSCEEEEEETTSCEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHhhhcCCcEEEcCCEEEEEEEc-CCceEEEEEECCCCEEECCEEEECCCCCh
Confidence            5666777888887 9999999999999887 55552 4555 677899999999999875

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=99.11  E-value=7.4e-10  Score=96.26  Aligned_cols=40  Identities=25%  Similarity=0.341  Sum_probs=37.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhC-CCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~~~~~GG~~   43 (342)
                      ++||+|||||++||++|+.|+++ |.+|+|+|+++.+||.+
T Consensus        39 ~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           39 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             ccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            57999999999999999999997 99999999999988754

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=99.11  E-value=5.4e-10  Score=105.34  Aligned_cols=56  Identities=21%  Similarity=0.191  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CCc--EEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~---~g~--~~~a~~vI~~~~~~~  289 (342)
                      .+...|.+.+++.|++|+++++|++|..+ ++++.+|+.   +|.  ++.||.||.|+|.++
T Consensus       112 ~l~~~L~~~a~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~dG~~~~i~ad~VI~AdG~~S  172 (512)
T 3e1t_A          112 RFDDMLLRNSERKGVDVRERHEVIDVLFE-GERAVGVRYRNTEGVELMAHARFIVDASGNRT  172 (512)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEEE-TTEEEEEEEECSSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEE-CCEEEEEEEEeCCCCEEEEEcCEEEECCCcch
Confidence            56777888888899999999999999987 677665554   453  799999999999875

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=99.11  E-value=3.9e-10  Score=100.93  Aligned_cols=43  Identities=30%  Similarity=0.414  Sum_probs=39.5

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |. ++||+|||||++|+++|+.|+++|++|+|+|+++.+||.+.
T Consensus         1 m~-~~~vvIIG~G~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~   43 (357)
T 4a9w_A            1 MD-SVDVVVIGGGQSGLSAGYFLRRSGLSYVILDAEASPGGAWQ   43 (357)
T ss_dssp             CE-EEEEEEECCSHHHHHHHHHHHHSSCCEEEECCSSSSSGGGG
T ss_pred             CC-cCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCCCCCCccc
Confidence            54 48999999999999999999999999999999999998764

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=99.10  E-value=8.6e-10  Score=106.43  Aligned_cols=56  Identities=16%  Similarity=0.115  Sum_probs=45.8

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYL  288 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~~  288 (342)
                      ..+...|.+.+++.|++|++++.|++|..+ ++++.+|..    +|.  .+.|+.||+|+|-+
T Consensus       158 ~~l~~~L~~~a~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~  219 (660)
T 2bs2_A          158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGGY  219 (660)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEEEEEEec-CCEEEEEEEEECCCCcEEEEEcCEEEEccCcc
Confidence            368889999999999999999999999876 677777654    344  48999999988744

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=99.10  E-value=6.5e-10  Score=104.07  Aligned_cols=57  Identities=19%  Similarity=0.218  Sum_probs=46.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|++++++++|++|+.+ ++++ .|++ +|+++.||.||+|+|..|+
T Consensus       232 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~v-~v~~~~g~~i~aD~Vi~A~G~~p~  289 (484)
T 3o0h_A          232 YDLRQLLNDAMVAKGISIIYEATVSQVQST-ENCY-NVVLTNGQTICADRVMLATGRVPN  289 (484)
T ss_dssp             HHHHHHHHHHHHHHTCEEESSCCEEEEEEC-SSSE-EEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCEEEEEEee-CCEE-EEEECCCcEEEcCEEEEeeCCCcC
Confidence            356777888888899999999999999876 5555 4555 6778999999999998653

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=99.09  E-value=7.5e-10  Score=105.00  Aligned_cols=57  Identities=9%  Similarity=0.018  Sum_probs=45.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCC----cEEEEEeCC---cEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEG----KVVGVTSEG---ETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~----~~~~v~~~g---~~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++.|++|+++++|++++.+ ++    ++.....++   .+++||.||.|.|.++
T Consensus       120 ~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~-~~~~~~~v~v~~~~~~~~~~i~a~~vV~AdG~~S  183 (535)
T 3ihg_A          120 DKLEPILLAQARKHGGAIRFGTRLLSFRQH-DDDAGAGVTARLAGPDGEYDLRAGYLVGADGNRS  183 (535)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEEE-CGGGCSEEEEEEEETTEEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEC-CCCccccEEEEEEcCCCeEEEEeCEEEECCCCcc
Confidence            356677888888889999999999999987 44    544333444   6899999999999875

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=99.08  E-value=2e-09  Score=101.03  Aligned_cols=56  Identities=9%  Similarity=-0.015  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCc---EEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGE---TAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~---~~~a~~vI~~~~~~~  289 (342)
                      .+...|.+.+++.|++|+++++|++++.+ ++++.....++.   +++||.||.|.|.++
T Consensus       108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~-~~~v~v~~~~~~g~~~~~a~~vVgADG~~S  166 (499)
T 2qa2_A          108 TTESVLEEWALGRGAELLRGHTVRALTDE-GDHVVVEVEGPDGPRSLTTRYVVGCDGGRS  166 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCEEEEEEEC-SSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence            56667778888889999999999999987 555553333443   799999999998764

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=99.04  E-value=1.8e-09  Score=103.25  Aligned_cols=58  Identities=17%  Similarity=0.265  Sum_probs=47.0

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC----------------CcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE----------------GETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~----------------g~~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++.|++|+++++|++|..++++++++|++.                +.+++||.||.|.|..+
T Consensus       144 ~~l~~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S  217 (584)
T 2gmh_A          144 GHLVSWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHG  217 (584)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCc
Confidence            35677788888888999999999999988734667767653                25899999999998765

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=99.03  E-value=1.6e-09  Score=102.47  Aligned_cols=39  Identities=21%  Similarity=0.336  Sum_probs=34.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      ++||+|||||++||+||+.|++ |.+|+|+||.+..||.+
T Consensus         8 ~~DVvVVG~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~s   46 (540)
T 1chu_A            8 SCDVLIIGSGAAGLSLALRLAD-QHQVIVLSKGPVTEGST   46 (540)
T ss_dssp             ECSEEEECCSHHHHHHHHHHTT-TSCEEEECSSCTTC---
T ss_pred             CCCEEEECccHHHHHHHHHHhc-CCcEEEEECCCCCCCCh
Confidence            5899999999999999999999 99999999998877654

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=99.02  E-value=1.2e-09  Score=103.69  Aligned_cols=41  Identities=27%  Similarity=0.397  Sum_probs=38.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||||++|+++|..|++.|++|+|+|+++.+||.+.
T Consensus        21 ~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~   61 (549)
T 4ap3_A           21 SYDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWY   61 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            58999999999999999999999999999999999999664

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=99.02  E-value=2.1e-09  Score=97.92  Aligned_cols=39  Identities=18%  Similarity=0.196  Sum_probs=34.6

Q ss_pred             CC-CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            1 MD-EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         1 m~-~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      |+ ..+||+|||||++||++|+.|+++|.+|+|+|+++.+
T Consensus         1 M~~~~~~V~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (397)
T 2vou_A            1 MSPTTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQP   40 (397)
T ss_dssp             -CCCCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CCCCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            43 3589999999999999999999999999999998763

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=99.01  E-value=4.2e-09  Score=95.83  Aligned_cols=57  Identities=12%  Similarity=0.188  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE-eCCc--EEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGE--TAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~-~~g~--~~~a~~vI~~~~~~~  289 (342)
                      .+...|.+.+.+.|++|+++++|+++..++++.+.... .+|.  +++||.||.|.|.++
T Consensus       104 ~l~~~L~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~~g~~~~~~a~~vV~AdG~~S  163 (394)
T 1k0i_A          104 EVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHG  163 (394)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHhcCCeEEeceeEEEEEEecCCceEEEEecCCcEEEEEeCEEEECCCCCc
Confidence            45566777777789999999999999875223333222 3666  699999999999875

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=99.01  E-value=5.4e-09  Score=99.13  Aligned_cols=57  Identities=12%  Similarity=0.173  Sum_probs=47.0

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++.|++++.+ +|++|..++++.++.|++ +|.++.||.||.|+|.++
T Consensus       165 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G~~s  222 (538)
T 2aqj_A          165 HLVADFLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSGMRG  222 (538)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEETTSCEECCSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCCCch
Confidence            578888999999999999999 899998763455566766 566899999999998764

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=99.01  E-value=1e-09  Score=104.57  Aligned_cols=57  Identities=11%  Similarity=-0.009  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE--eCC-cEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT--SEG-ETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~--~~g-~~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++.|++|+.+++|++|+.+ ++.+....  .+| .+++||.||.|.|.++
T Consensus       148 ~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~-~~~v~v~~~~~~G~~~~~a~~vV~ADG~~S  207 (570)
T 3fmw_A          148 SRTEALLAEHAREAGAEIPRGHEVTRLRQD-AEAVEVTVAGPSGPYPVRARYGVGCDGGRS  207 (570)
T ss_dssp             HHHHHHHHHHHHHHTEECCBSCEEEECCBC-SSCEEEEEEETTEEEEEEESEEEECSCSSC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCeEEEEEEeCCCcEEEEeCEEEEcCCCCc
Confidence            346667778888889999999999999877 55554332  255 5899999999999775

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=99.00  E-value=6.5e-09  Score=95.30  Aligned_cols=58  Identities=19%  Similarity=0.185  Sum_probs=49.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+.+.+.+.+++.|++|++++.|++|..+ ++++..|++ +|+++.||.||+|+|+.|+
T Consensus       194 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~  252 (415)
T 3lxd_A          194 EALSEFYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVRMQDGSVIPADIVIVGIGIVPC  252 (415)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEES-SSBEEEEEESSSCEEECSEEEECSCCEES
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEec-CCcEEEEEeCCCCEEEcCEEEECCCCccC
Confidence            466777888888999999999999999876 677777777 7789999999999998874

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=99.00  E-value=1.5e-09  Score=102.60  Aligned_cols=41  Identities=27%  Similarity=0.347  Sum_probs=38.4

Q ss_pred             cccEEEECCCchHHHHHHhhh-hCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLS-VDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~-~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||||++|+++|..|+ +.|.+|+|+|+++.+||.+.
T Consensus         8 ~~dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~   49 (540)
T 3gwf_A            8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWY   49 (540)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCccc
Confidence            489999999999999999999 99999999999999998654

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=98.99  E-value=5.8e-09  Score=94.41  Aligned_cols=53  Identities=17%  Similarity=0.169  Sum_probs=42.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+.+.|.+.+++.|++|+++++|++|+.  ++   .|++ +|.+++||.||.|+|..+
T Consensus       107 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~---~v~~~~g~~~~ad~vV~AdG~~s  160 (379)
T 3alj_A          107 SHLHDALVNRARALGVDISVNSEAVAADP--VG---RLTLQTGEVLEADLIVGADGVGS  160 (379)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEET--TT---EEEETTSCEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEe--CC---EEEECCCCEEEcCEEEECCCccH
Confidence            35666777777888999999999999975  33   3444 677899999999999875

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=98.99  E-value=2.3e-09  Score=101.67  Aligned_cols=42  Identities=29%  Similarity=0.275  Sum_probs=39.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .++||+|||||++|+++|+.|+++|.+|+|+|+++.+||.+.
T Consensus        15 ~~~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~   56 (542)
T 1w4x_A           15 EEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   56 (542)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            358999999999999999999999999999999999998754

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=98.98  E-value=6.1e-09  Score=99.76  Aligned_cols=56  Identities=16%  Similarity=0.158  Sum_probs=45.6

Q ss_pred             ChHHHHHHHHHHHcC-cEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCCC
Q 019351          232 GELPQAFARLSAVYG-GTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSYL  288 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~~  288 (342)
                      ..+...|.+.+++.| ++|++++.|++|..+ ++++.+|..    +|+  ++.|+.||+|+|-+
T Consensus       134 ~~l~~~L~~~~~~~gnv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~  196 (602)
T 1kf6_A          134 FHMLHTLFQTSLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRANAVVMATGGA  196 (602)
T ss_dssp             HHHHHHHHHHHTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEECSCEEECCCCC
T ss_pred             HHHHHHHHHHHHhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEcCeEEECCCCC
Confidence            467888999888888 999999999999887 677766642    455  68999999998754

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=98.95  E-value=1.4e-09  Score=96.25  Aligned_cols=41  Identities=20%  Similarity=0.240  Sum_probs=38.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .+||+|||||++||+||+.|+++|++|+|+|+++.+||.+.
T Consensus         7 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~   47 (332)
T 3lzw_A            7 VYDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLS   47 (332)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             cceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceeh
Confidence            47999999999999999999999999999999999988763

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=98.95  E-value=4.9e-09  Score=99.17  Aligned_cols=36  Identities=22%  Similarity=0.423  Sum_probs=32.3

Q ss_pred             CcccEEEECCCchHHHHHHhhhh-CCCeEEEEcCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDY   38 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~-~G~~V~vlE~~~~   38 (342)
                      .+||+||||||.+|+++|.+|++ .|++|+|||++..
T Consensus        16 ~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~   52 (526)
T 3t37_A           16 PNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEE   52 (526)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBC
T ss_pred             CCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCC
Confidence            36999999999999999999998 6799999999754

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=98.92  E-value=5.6e-09  Score=99.06  Aligned_cols=54  Identities=17%  Similarity=0.160  Sum_probs=44.0

Q ss_pred             hHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC
Q 019351          233 ELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (342)
Q Consensus       233 ~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~  288 (342)
                      .+...|.+.++. .|++| +++.|+.|..+ ++++++|.+ +|.++.||.||+|+|.+
T Consensus       124 ~~~~~L~~~Le~~~GVeI-~~~~Vt~L~~e-~g~V~GV~t~dG~~i~AdaVVLATG~~  179 (637)
T 2zxi_A          124 RYREYMKKVCENQENLYI-KQEEVVDIIVK-NNQVVGVRTNLGVEYKTKAVVVTTGTF  179 (637)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EESCEEEEEES-SSBEEEEEETTSCEEECSEEEECCTTC
T ss_pred             HHHHHHHHHHHhCCCCEE-EEeEEEEEEec-CCEEEEEEECCCcEEEeCEEEEccCCC
Confidence            466777777777 59999 57899999887 778888877 67789999999999865

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=98.92  E-value=2.6e-08  Score=92.80  Aligned_cols=56  Identities=18%  Similarity=0.260  Sum_probs=45.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++.|++|+++++| +|..+ ++++.++..  +++++.||.||+|+|.++
T Consensus       119 ~~l~~~L~~~~~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~~~~g~~~a~~VVlAtGg~~  176 (472)
T 2e5v_A          119 REIFNFLLKLAREEGIPIIEDRLV-EIRVK-DGKVTGFVTEKRGLVEDVDKLVLATGGYS  176 (472)
T ss_dssp             HHHHHHHHHHHHHTTCCEECCCEE-EEEEE-TTEEEEEEETTTEEECCCSEEEECCCCCG
T ss_pred             HHHHHHHHHHHHhCCCEEEECcEE-EEEEe-CCEEEEEEEEeCCCeEEeeeEEECCCCCc
Confidence            467788888888889999999999 99876 677776654  445688999999988653

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=98.92  E-value=2.1e-08  Score=91.62  Aligned_cols=59  Identities=22%  Similarity=0.318  Sum_probs=50.1

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      ...+...+.+.+++.|++++++++|++|..+ ++++..|++ +|+++.||.||+|+|+.|+
T Consensus       183 ~~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~  242 (404)
T 3fg2_P          183 TPEISSYFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLSDGNTLPCDLVVVGVGVIPN  242 (404)
T ss_dssp             CHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred             CHHHHHHHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeCCCCEEEcCEEEECcCCccC
Confidence            3466778888889999999999999999876 677777776 7779999999999998764

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=98.89  E-value=3.3e-09  Score=100.47  Aligned_cols=41  Identities=27%  Similarity=0.470  Sum_probs=38.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||||++|+++|..|++.|.+|+|+|+++.+||.+.
T Consensus         9 ~~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~   49 (545)
T 3uox_A            9 ALDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWY   49 (545)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccc
Confidence            58999999999999999999999999999999999998754

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=98.89  E-value=1.1e-08  Score=97.38  Aligned_cols=55  Identities=16%  Similarity=0.092  Sum_probs=44.4

Q ss_pred             hHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      .+...|.+.++. .|++| ++++|+.|..+ ++++++|.+ +|.++.||.||+|+|.++
T Consensus       125 ~~~~~L~e~Le~~~GV~I-~~~~V~~L~~e-~g~V~GV~t~dG~~I~Ad~VVLATGt~s  181 (651)
T 3ces_A          125 LYRQAVRTALENQPNLMI-FQQAVEDLIVE-NDRVVGAVTQMGLKFRAKAVVLTVGTFL  181 (651)
T ss_dssp             HHHHHHHHHHHTCTTEEE-EECCEEEEEES-SSBEEEEEETTSEEEEEEEEEECCSTTT
T ss_pred             HHHHHHHHHHHhCCCCEE-EEEEEEEEEec-CCEEEEEEECCCCEEECCEEEEcCCCCc
Confidence            466677777777 59999 57899999877 677888887 667899999999998764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=98.88  E-value=1.2e-08  Score=94.59  Aligned_cols=57  Identities=7%  Similarity=0.117  Sum_probs=47.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|++++++++|++|+.+ ++++ .|+++++++.||.||+|+|..|+
T Consensus       189 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~~~g~i~aD~Vv~A~G~~p~  245 (452)
T 3oc4_A          189 KEMVAEVQKSLEKQAVIFHFEETVLGIEET-ANGI-VLETSEQEISCDSGIFALNLHPQ  245 (452)
T ss_dssp             HHHHHHHHHHHHTTTEEEEETCCEEEEEEC-SSCE-EEEESSCEEEESEEEECSCCBCC
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEcc-CCeE-EEEECCCEEEeCEEEECcCCCCC
Confidence            456778888888999999999999999876 5665 66676569999999999998764

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=98.88  E-value=8.9e-10  Score=97.72  Aligned_cols=42  Identities=26%  Similarity=0.271  Sum_probs=38.6

Q ss_pred             cccEEEECCCchHHHHHHhhhh--CCCeEEEEcCCCCCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSV--DGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~--~G~~V~vlE~~~~~GG~~~t   45 (342)
                      ++||+|||||++||+||++|++  .|++|+|+|+++.+||.+..
T Consensus        65 ~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~  108 (326)
T 3fpz_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL  108 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEe
Confidence            5899999999999999999985  59999999999999998764

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=98.87  E-value=1.3e-09  Score=96.02  Aligned_cols=43  Identities=26%  Similarity=0.481  Sum_probs=37.2

Q ss_pred             CCC-cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~-~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |++ +|||+|||||++|++||.+|+++|++|+|+|+. .+||.+.
T Consensus         2 Mte~~yDvvIIG~GpAGl~aA~~l~~~g~~V~liE~~-~~gG~~~   45 (312)
T 4gcm_A            2 MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERG-IPGGQMA   45 (312)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGG
T ss_pred             CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCCeee
Confidence            765 699999999999999999999999999999985 6777664

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=98.86  E-value=1.1e-08  Score=98.85  Aligned_cols=38  Identities=16%  Similarity=0.289  Sum_probs=35.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhh-CCCeEEEEcCCCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYYG   40 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~-~G~~V~vlE~~~~~G   40 (342)
                      .++||+|||||++||++|+.|++ +|.+|+|+|+++.++
T Consensus        31 ~~~dVlIVGaGpaGL~~A~~La~~~G~~V~viEr~~~~~   69 (639)
T 2dkh_A           31 SQVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPM   69 (639)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHTTCTTSCEEEECSSSSCC
T ss_pred             CCCcEEEECcCHHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            46899999999999999999999 999999999987654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=98.85  E-value=1.6e-08  Score=94.34  Aligned_cols=58  Identities=19%  Similarity=0.174  Sum_probs=48.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|++++++++|++|+.+ ++++..+..+|+++.||.||+|+|..|+
T Consensus       202 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~v~~~~g~~i~aD~Vv~a~G~~p~  259 (472)
T 3iwa_A          202 KSLSQMLRHDLEKNDVVVHTGEKVVRLEGE-NGKVARVITDKRTLDADLVILAAGVSPN  259 (472)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEES-SSBEEEEEESSCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEcc-CCeEEEEEeCCCEEEcCEEEECCCCCcC
Confidence            456778888888999999999999999876 5666544458889999999999998764

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=98.84  E-value=7.3e-08  Score=93.11  Aligned_cols=56  Identities=16%  Similarity=0.091  Sum_probs=44.6

Q ss_pred             ChHHHHHHHHHHHc-Cc-EEEcCCccceEEEcCCC---cEEEEEe----CCc--EEEcCEEEECCCCC
Q 019351          232 GELPQAFARLSAVY-GG-TYMLNKPECKVEFDEEG---KVVGVTS----EGE--TAKCKKVVCDPSYL  288 (342)
Q Consensus       232 ~~l~~~l~~~~~~~-G~-~i~~~~~V~~i~~~~~~---~~~~v~~----~g~--~~~a~~vI~~~~~~  288 (342)
                      ..+...|.+.+++. |+ +|++++.|++|..+ ++   ++.+|..    +|+  ++.|+.||+|+|-+
T Consensus       151 ~~~~~~l~~~~~~~~gv~~i~~~~~v~~L~~~-~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~  217 (643)
T 1jnr_A          151 ESYKPIIAEAAKMAVGEENIYERVFIFELLKD-NNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGA  217 (643)
T ss_dssp             TTHHHHHHHHHHHHHCGGGEECSEEEEEEEEC-TTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCB
T ss_pred             HHHHHHHHHHHHhcCCCcEEEecCEEEEEEEc-CCccceeEEEEEEEecCCcEEEEEcCEEEECCCcc
Confidence            35777888888887 99 99999999999887 55   8887653    444  68999999988743

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=98.82  E-value=1.9e-09  Score=94.82  Aligned_cols=38  Identities=21%  Similarity=0.228  Sum_probs=35.1

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      |++.|||+|||||++|++||.+|+++|++|+|+|+...
T Consensus         1 M~~~yDvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~   38 (314)
T 4a5l_A            1 MSNIHDVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMA   38 (314)
T ss_dssp             -CCCEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSG
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHHCCCCEEEEecCCC
Confidence            88889999999999999999999999999999999753

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=98.81  E-value=8.3e-08  Score=92.62  Aligned_cols=55  Identities=13%  Similarity=0.068  Sum_probs=44.7

Q ss_pred             ChHHHHHHHHHHHc--CcEEEcCCccceEEEcCCC---cEEEEEe----CCc--EEEcCEEEECCCC
Q 019351          232 GELPQAFARLSAVY--GGTYMLNKPECKVEFDEEG---KVVGVTS----EGE--TAKCKKVVCDPSY  287 (342)
Q Consensus       232 ~~l~~~l~~~~~~~--G~~i~~~~~V~~i~~~~~~---~~~~v~~----~g~--~~~a~~vI~~~~~  287 (342)
                      ..+...|.+.+++.  |++|+.++.|++|..+ ++   ++.+|..    +|+  .+.|+.||+|+|-
T Consensus       166 ~~i~~~L~~~a~~~~~gV~i~~~~~v~dLi~~-~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG  231 (662)
T 3gyx_A          166 ESYKVIVAEAAKNALGQDRIIERIFIVKLLLD-KNTPNRIAGAVGFNLRANEVHIFKANAMVVACGG  231 (662)
T ss_dssp             TSHHHHHHHHHHHHHCTTTEECSEEECCCEEC-SSSTTBEEEEEEEESSSSCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEceEEEEEEEe-CCccceEEEEEEEEcCCCcEEEEEeCEEEECCCc
Confidence            46788888888887  9999999999999887 44   8887754    343  5899999998863

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=98.81  E-value=2.9e-09  Score=93.36  Aligned_cols=39  Identities=21%  Similarity=0.187  Sum_probs=34.5

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      ++|||+|||||++||+||.+|+++|++|+|+|++.. ||.
T Consensus         5 ~~yDVvIIGaGpAGlsAA~~lar~g~~v~lie~~~~-gg~   43 (304)
T 4fk1_A            5 KYIDCAVIGAGPAGLNASLVLGRARKQIALFDNNTN-RNR   43 (304)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSCC-GGG
T ss_pred             CCcCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCC-CCe
Confidence            459999999999999999999999999999999754 443

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=98.80  E-value=1.3e-08  Score=95.68  Aligned_cols=38  Identities=18%  Similarity=0.344  Sum_probs=35.1

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      .++|++|||+|.+|+++|.+|++.|.+|+|+|++...+
T Consensus         4 ~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~~   41 (504)
T 1n4w_A            4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWN   41 (504)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSCCCC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCC
Confidence            35899999999999999999999999999999987655

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=98.79  E-value=1.7e-08  Score=94.79  Aligned_cols=38  Identities=13%  Similarity=0.298  Sum_probs=34.6

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      ..++|++|||+|.+|+++|.+|++.|.+|+|+|++...
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~~~~~v~~~e~~~~~   46 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSW   46 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence            34699999999999999999999999999999997653

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=98.77  E-value=5.9e-09  Score=93.79  Aligned_cols=42  Identities=24%  Similarity=0.256  Sum_probs=37.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      |..++||+|||||++|+++|+.|+++|++|+|+|++...+|.
T Consensus         3 m~~~~dVvVIG~Gi~Gls~A~~La~~G~~V~vle~~~~~~g~   44 (363)
T 1c0p_A            3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVS   44 (363)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTT
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHhCCCEEEEEeccCCCCcC
Confidence            556799999999999999999999999999999998755543

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=98.74  E-value=4e-08  Score=91.05  Aligned_cols=58  Identities=17%  Similarity=0.220  Sum_probs=48.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|++++++++|++|..+ ++++..+.++|+++.||.||+|+|..|+
T Consensus       191 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~~v~~~g~~i~~D~vv~a~G~~p~  248 (452)
T 2cdu_A          191 KEFTDILAKDYEAHGVNLVLGSKVAAFEEV-DDEIITKTLDGKEIKSDIAILCIGFRPN  248 (452)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESSCEEEEEEE-TTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             hhHHHHHHHHHHHCCCEEEcCCeeEEEEcC-CCeEEEEEeCCCEEECCEEEECcCCCCC
Confidence            356777888888999999999999999865 5666667778889999999999998764

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=98.72  E-value=4.6e-09  Score=97.78  Aligned_cols=45  Identities=29%  Similarity=0.324  Sum_probs=41.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      |+.++||+|||||++|++||..|++.|++|+|+|+++.+||.+..
T Consensus         1 M~~~~DVvVIGgG~aGl~aA~~l~~~G~~V~liEk~~~~GG~~~~   45 (466)
T 3l8k_A            1 MSLKYDVVVIGAGGAGYHGAFRLAKAKYNVLMADPKGELGGNCLY   45 (466)
T ss_dssp             -CEEEEEEEECCSHHHHHHHHHHHHTTCCEEEECTTSSSSHHHHH
T ss_pred             CCccceEEEECCCHHHHHHHHHHHhCCCeEEEEECCCCCCCcccc
Confidence            777899999999999999999999999999999999999998753

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=98.68  E-value=4.1e-08  Score=93.03  Aligned_cols=38  Identities=26%  Similarity=0.353  Sum_probs=34.5

Q ss_pred             CcccEEEECCCchHHHHHHhhhhC-CCeEEEEcCCCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYG   40 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~~~~~G   40 (342)
                      .++|++|||+|.+|+++|++|++. |.+|+|||++....
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~   50 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDR   50 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCC
Confidence            359999999999999999999998 89999999986654

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=98.66  E-value=1e-08  Score=92.04  Aligned_cols=44  Identities=11%  Similarity=0.212  Sum_probs=39.3

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+.++||+|||||++|+++|+.|+++|++|+|+|+++.+||.+.
T Consensus        11 ~~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   54 (360)
T 3ab1_A           11 HHDMRDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLA   54 (360)
T ss_dssp             --CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHH
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCccc
Confidence            44568999999999999999999999999999999999998764

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=98.65  E-value=1.1e-08  Score=90.76  Aligned_cols=44  Identities=20%  Similarity=0.323  Sum_probs=39.7

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+.++||+|||||++|+++|+.|+++|++|+|+|+++.+||.+.
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~   45 (335)
T 2zbw_A            2 AADHTDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLT   45 (335)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHH
T ss_pred             CCCcCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeee
Confidence            34568999999999999999999999999999999999998764

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=98.64  E-value=1.2e-08  Score=95.71  Aligned_cols=43  Identities=28%  Similarity=0.478  Sum_probs=38.8

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      .++||+|||||.+|++||..|+++|++|+|+|+++.+||.+..
T Consensus        24 ~~~dVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~GG~~~~   66 (491)
T 3urh_A           24 MAYDLIVIGSGPGGYVCAIKAAQLGMKVAVVEKRSTYGGTCLN   66 (491)
T ss_dssp             --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccc
Confidence            3589999999999999999999999999999999999997653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=98.64  E-value=1.8e-08  Score=88.85  Aligned_cols=43  Identities=21%  Similarity=0.448  Sum_probs=37.7

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+.++||+|||||++|++||+.|+++|++|+|+|+ ..+||.+.
T Consensus        13 m~~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~   55 (319)
T 3cty_A           13 KERDFDVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTA   55 (319)
T ss_dssp             -CCEEEEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGG
T ss_pred             ccCCCcEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCcccc
Confidence            55568999999999999999999999999999999 46777664

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=98.64  E-value=1.9e-08  Score=91.96  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=35.7

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCe-EEEEcCCCCCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDYYGG   41 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~-V~vlE~~~~~GG   41 (342)
                      |+.++||+|||||++||++|..|+++|.+ |+|+|+++.++.
T Consensus         1 M~~~~dVvIVGaG~aGl~~A~~L~~~G~~~v~v~E~~~~~~~   42 (410)
T 3c96_A            1 MSEPIDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRP   42 (410)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCC
T ss_pred             CCCCCeEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCCccc
Confidence            66679999999999999999999999999 999999887654

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=98.60  E-value=1.7e-08  Score=93.86  Aligned_cols=57  Identities=16%  Similarity=0.114  Sum_probs=45.8

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE-e-CCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-S-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~-~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|++|+++++|++|..+ +++...|+ + +|+ +.||.||+|+|..|+
T Consensus       211 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~~g~-i~aD~Vv~a~G~~p~  269 (463)
T 4dna_A          211 QDMRRGLHAAMEEKGIRILCEDIIQSVSAD-ADGRRVATTMKHGE-IVADQVMLALGRMPN  269 (463)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEEC-TTSCEEEEESSSCE-EEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHHCCCEEECCCEEEEEEEc-CCCEEEEEEcCCCe-EEeCEEEEeeCcccC
Confidence            456778888889999999999999999876 44434566 6 555 999999999998754

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=98.59  E-value=4e-08  Score=90.97  Aligned_cols=44  Identities=16%  Similarity=0.220  Sum_probs=40.0

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCCCCCCcCcc
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDYYGGESSS   45 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~~~GG~~~t   45 (342)
                      ...+||+|||||++||++|..|++.|.  +|+|||+++.+||.+..
T Consensus         4 ~~~~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            4 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCCEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            346899999999999999999999999  99999999999987653

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=98.59  E-value=3e-08  Score=87.42  Aligned_cols=41  Identities=22%  Similarity=0.284  Sum_probs=37.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||||++||++|+.|+++  |++|+|+|+++.+||.++
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~  121 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAW  121 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccc
Confidence            58999999999999999999997  999999999999887554

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=98.58  E-value=4.1e-08  Score=89.46  Aligned_cols=40  Identities=20%  Similarity=0.374  Sum_probs=36.2

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      +++||+|||||++||++|+.|+++|.+|+|+|+++.++.+
T Consensus        25 ~~~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~   64 (398)
T 2xdo_A           25 SDKNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR   64 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCC
T ss_pred             CCCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcccc
Confidence            4589999999999999999999999999999998776543

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=98.58  E-value=2.7e-08  Score=88.26  Aligned_cols=44  Identities=16%  Similarity=0.188  Sum_probs=39.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC----CCCCCcCccc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN----DYYGGESSSL   46 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~----~~~GG~~~t~   46 (342)
                      .++||+|||||++||++|+.|+++|++|+|+|++    ..+||.+...
T Consensus        21 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~~   68 (338)
T 3itj_A           21 VHNKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTTT   68 (338)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGGS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCcccccc
Confidence            4589999999999999999999999999999994    4788877643

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=98.58  E-value=3.4e-08  Score=86.96  Aligned_cols=40  Identities=25%  Similarity=0.316  Sum_probs=37.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      ++||+|||||++||+||+.|+++|++|+|+|++  +||.+..
T Consensus        15 ~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~   54 (323)
T 3f8d_A           15 KFDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE   54 (323)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred             ccCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence            489999999999999999999999999999998  8887764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=98.58  E-value=3.2e-08  Score=87.51  Aligned_cols=42  Identities=21%  Similarity=0.381  Sum_probs=38.1

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      .++||+|||||++|+++|..|+++|++|+|+|++ .+||.+..
T Consensus         7 ~~~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            7 HDYDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            3589999999999999999999999999999999 68887653

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=98.57  E-value=1.7e-08  Score=94.30  Aligned_cols=45  Identities=16%  Similarity=0.328  Sum_probs=41.0

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      |+.++||+|||||++|++||..|+++|++|+|+|+++.+||.+..
T Consensus         2 M~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~~   46 (478)
T 1v59_A            2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (478)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCcCCccce
Confidence            556799999999999999999999999999999999999987643

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=98.57  E-value=1.8e-06  Score=82.26  Aligned_cols=59  Identities=15%  Similarity=0.141  Sum_probs=46.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEc------------------CCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFD------------------EEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~------------------~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|+++++++.|++|..+                  +++++..+..+|+++.||.||+|+|..|+
T Consensus       192 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~  268 (565)
T 3ntd_A          192 REMAGFAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPE  268 (565)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccc
Confidence            356667778888899999999999999862                  14555544457889999999999998764

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=98.56  E-value=2.1e-08  Score=93.74  Aligned_cols=44  Identities=36%  Similarity=0.471  Sum_probs=40.6

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+.++||+|||||.+|++||.+|++.|++|+|+|+++.+||.+.
T Consensus         3 m~~~~dVvIIGaG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   46 (482)
T 1ojt_A            3 ADAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (482)
T ss_dssp             SEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCcee
Confidence            66679999999999999999999999999999999999998764

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=98.55  E-value=4.2e-08  Score=92.66  Aligned_cols=60  Identities=18%  Similarity=0.153  Sum_probs=47.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcE--EEEEe-CCc-EEEcCEEEECCCCCCcc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKV--VGVTS-EGE-TAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~--~~v~~-~g~-~~~a~~vI~~~~~~~~~  291 (342)
                      ..+...+.+.+++.|++++++++|++|..++++++  +.|++ +|+ ++.||.||+|+|..|+.
T Consensus       255 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~~  318 (523)
T 1mo9_A          255 NETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPRS  318 (523)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEEECSCEEECCCCEECC
T ss_pred             HHHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEEEcCEEEECcCCccCC
Confidence            35677888888999999999999999987523443  34555 555 89999999999988753

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=98.54  E-value=3.8e-08  Score=91.61  Aligned_cols=57  Identities=14%  Similarity=0.153  Sum_probs=47.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+.+.+.+.+++.|++++++++|++|..+ ++ .+.++++++++.||.||+|+|..|+
T Consensus       216 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~-~~~v~~~~~~i~aD~Vv~a~G~~p~  272 (467)
T 1zk7_A          216 PAIGEAVTAAFRAEGIEVLEHTQASQVAHM-DG-EFVLTTTHGELRADKLLVATGRTPN  272 (467)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCEEEEEEE-TT-EEEEEETTEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEe-CC-EEEEEECCcEEEcCEEEECCCCCcC
Confidence            356778888888999999999999999865 44 4566777789999999999998764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=98.54  E-value=3.5e-08  Score=91.70  Aligned_cols=56  Identities=18%  Similarity=0.147  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCc-EEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-TAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~-~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++++++++|++|+.+ +++ ..|++ +|+ ++.+|.||+|+|..|+
T Consensus       208 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~G~~~i~~D~vv~a~G~~p~  265 (463)
T 2r9z_A          208 LLSATLAENMHAQGIETHLEFAVAALERD-AQG-TTLVAQDGTRLEGFDSVIWAVGRAPN  265 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCCEEEEEEE-TTE-EEEEETTCCEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCe-EEEEEeCCcEEEEcCEEEECCCCCcC
Confidence            45667778888899999999999999875 444 44555 777 7999999999997764

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=98.53  E-value=5.5e-08  Score=85.26  Aligned_cols=41  Identities=27%  Similarity=0.318  Sum_probs=37.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||||++||++|+.|+++  |++|+|+|+++.+||.++
T Consensus        65 ~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~  107 (326)
T 2gjc_A           65 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence            47999999999999999999998  999999999999987654

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=98.52  E-value=3.7e-08  Score=91.27  Aligned_cols=57  Identities=9%  Similarity=0.088  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+.+.+.+.+++.|++++++++|++|+.+ +++...+++ +|+++.||.||+|+|..|+
T Consensus       209 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~~D~vv~a~G~~p~  266 (450)
T 1ges_A          209 MISETLVEVMNAEGPQLHTNAIPKAVVKN-TDGSLTLELEDGRSETVDCLIWAIGREPA  266 (450)
T ss_dssp             HHHHHHHHHHHHHSCEEECSCCEEEEEEC-TTSCEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCcEEEEEECCCcEEEcCEEEECCCCCcC
Confidence            46677788888899999999999999875 333234554 6778999999999997764

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=98.52  E-value=6e-08  Score=90.52  Aligned_cols=58  Identities=10%  Similarity=0.118  Sum_probs=45.0

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCC---cEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEG---ETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g---~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|++++++++|++++.+ ++++.....++   .++.||.||+|+|..|+
T Consensus       221 ~~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~-~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~  281 (476)
T 3lad_A          221 EQVAKEAQKILTKQGLKILLGARVTGTEVK-NKQVTVKFVDAEGEKSQAFDKLIVAVGRRPV  281 (476)
T ss_dssp             HHHHHHHHHHHHHTTEEEEETCEEEEEEEC-SSCEEEEEESSSEEEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEc-CCEEEEEEEeCCCcEEEECCEEEEeeCCccc
Confidence            356777888888899999999999999876 55544333333   57999999999997664

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.51  E-value=7.2e-08  Score=92.69  Aligned_cols=44  Identities=32%  Similarity=0.495  Sum_probs=38.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+.++||+|||||++|++||+.|+++|++|+|+|+.+..||.+.
T Consensus        43 ~~~~~dvvIIG~G~aGl~aA~~l~~~G~~V~liE~~~~~gg~~~   86 (623)
T 3pl8_A           43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKI   86 (623)
T ss_dssp             ---CEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSST
T ss_pred             ccccCCEEEECCcHHHHHHHHHHHhCCCcEEEEeccCCCCCccc
Confidence            44569999999999999999999999999999999999998553

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=98.51  E-value=5.8e-08  Score=91.55  Aligned_cols=43  Identities=26%  Similarity=0.348  Sum_probs=38.6

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC--------CCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND--------YYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~--------~~GG~~~t   45 (342)
                      .+|||+|||||.+|++||.+|++.|++|+|+|+++        .+||.+..
T Consensus        31 ~~~DVvVIGgGpaGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~   81 (519)
T 3qfa_A           31 YDYDLIIIGGGSGGLAAAKEAAQYGKKVMVLDFVTPTPLGTRWGLGGTCVN   81 (519)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTCCCCCTTCHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEeccCccccccCCCcccccCC
Confidence            46999999999999999999999999999999965        78887653

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=98.50  E-value=7.8e-08  Score=80.80  Aligned_cols=53  Identities=21%  Similarity=0.185  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          235 PQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       235 ~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      ...|.+.+++. |++++ +++|++|..+ +++++.|.+ +|.++.||.||.|+|.++
T Consensus        71 ~~~l~~~~~~~~gv~i~-~~~v~~i~~~-~~~v~~v~~~~g~~i~a~~VV~A~G~~s  125 (232)
T 2cul_A           71 HARAKYLLEGLRPLHLF-QATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGSFL  125 (232)
T ss_dssp             HHHHHHHHHTCTTEEEE-ECCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred             HHHHHHHHHcCCCcEEE-EeEEEEEEEe-CCEEEEEEECCCCEEECCEEEECCCCCh
Confidence            34455666666 89998 6799999877 677767776 566899999999999854

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=98.48  E-value=5.1e-08  Score=87.19  Aligned_cols=65  Identities=8%  Similarity=-0.035  Sum_probs=47.6

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCcccc--ccceeEEEEEEecCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKVR--KVGRVARAIAIMSHP  308 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~--~~~~~~~~~~i~~~~  308 (342)
                      ...++.+|.+.+++.|++|+. ++|++|+.. +           .++||.||+|+|.+...+.  ....+.|..++..++
T Consensus       141 p~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~-~-----------~~~a~~VV~A~G~~s~~l~~~~~l~p~rg~~~~~~~  207 (351)
T 3g3e_A          141 GKNYLQWLTERLTERGVKFFQ-RKVESFEEV-A-----------REGADVIVNCTGVWAGALQRDPLLQPGRGQIMKVDA  207 (351)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEE-CCCCCHHHH-H-----------HTTCSEEEECCGGGGGGTSCCTTCEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHCCCEEEE-EEeCCHHHh-h-----------cCCCCEEEECCCcChHhhcCCCceeecCCcEEEEeC
Confidence            457899999999999999999 999988543 1           1679999999998864432  123566666655544

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=98.48  E-value=5.5e-08  Score=91.11  Aligned_cols=43  Identities=23%  Similarity=0.281  Sum_probs=38.2

Q ss_pred             CCC-cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~-~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+. +|||+|||||.+|++||.+|++.|++|+|+|++. +||.|.
T Consensus         4 M~~~~~DvvVIGgG~aGl~aA~~la~~G~~V~liE~~~-~GGtc~   47 (492)
T 3ic9_A            4 MKVINVDVAIIGTGTAGMGAYRAAKKHTDKVVLIEGGA-YGTTCA   47 (492)
T ss_dssp             CEEEEEEEEEECCSHHHHHHHHHHHTTCSCEEEEESSC-SSCHHH
T ss_pred             CccCCCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCC-CCCccc
Confidence            443 5899999999999999999999999999999974 888764

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=98.47  E-value=7.4e-08  Score=84.48  Aligned_cols=42  Identities=24%  Similarity=0.332  Sum_probs=38.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEE-EcCCCCCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLH-MDRNDYYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~v-lE~~~~~GG~~~t   45 (342)
                      .++||+|||||++||+||..|+++|++|+| +|+ +.+||.+..
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             CCceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            458999999999999999999999999999 999 778887653

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.47  E-value=8.8e-08  Score=89.23  Aligned_cols=44  Identities=20%  Similarity=0.365  Sum_probs=40.2

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      +.++||+|||||++|++||.+|++.|++|+|+|+++.+||.+..
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~~   47 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCLN   47 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHHH
T ss_pred             CccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCccccccC
Confidence            34689999999999999999999999999999999999998643

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=98.46  E-value=7.2e-08  Score=89.78  Aligned_cols=41  Identities=27%  Similarity=0.411  Sum_probs=38.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||||++|++||.+|++.|++|+|+|+++.+||.+.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~~~~GG~~~   42 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQLGMKTACVEKRGALGGTCL   42 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCcCC
Confidence            58999999999999999999999999999999999999765

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=98.45  E-value=5.4e-08  Score=91.24  Aligned_cols=57  Identities=19%  Similarity=0.229  Sum_probs=45.7

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++++++++|++|..+ +++...|++ +|+++.||.||+|+|..|+
T Consensus       236 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~G~~i~~D~vv~a~G~~p~  293 (495)
T 2wpf_A          236 TIREEVTKQLTANGIEIMTNENPAKVSLN-TDGSKHVTFESGKTLDVDVVMMAIGRIPR  293 (495)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEEC-TTSCEEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCceEEEEECCCcEEEcCEEEECCCCccc
Confidence            56777888888999999999999999876 333344555 6778999999999998764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=98.45  E-value=6.9e-08  Score=90.15  Aligned_cols=58  Identities=9%  Similarity=0.006  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC-cEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-ETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g-~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++++++++|++|+.++++++..|++ +| .++.||.||+|+|..|+
T Consensus       227 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~  286 (479)
T 2hqm_A          227 CIQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSH  286 (479)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCc
Confidence            566777888888999999999999998752332344555 66 68999999999997764

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=98.45  E-value=7.5e-08  Score=84.77  Aligned_cols=57  Identities=18%  Similarity=0.056  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C----C--cEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E----G--ETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~----g--~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++++++++|++|..+ ++++..|+. +    |  .++.||.||+|+|+.|+
T Consensus       185 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~  248 (320)
T 1trb_A          185 ILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN  248 (320)
T ss_dssp             HHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECSCEEES
T ss_pred             HHHHHHHHhcccCCeEEEcCceeEEEEcC-CCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCC
Confidence            45567777778889999999999999876 556655554 2    4  47999999999998764

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=98.43  E-value=7.4e-08  Score=89.92  Aligned_cols=42  Identities=19%  Similarity=0.299  Sum_probs=37.4

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      .++||+|||||++|++||..|+++|++|+|+|++ .+||.+..
T Consensus        19 ~~~dVvIIGgG~aGl~aA~~la~~G~~V~liE~~-~~GG~~~~   60 (478)
T 3dk9_A           19 ASYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTCVN   60 (478)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHHH
T ss_pred             CCCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcccc
Confidence            3589999999999999999999999999999976 77887643

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=98.43  E-value=1.2e-07  Score=88.80  Aligned_cols=43  Identities=23%  Similarity=0.259  Sum_probs=38.5

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcC--------CCCCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDR--------NDYYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~--------~~~~GG~~~t   45 (342)
                      .+|||+|||||.+|++||..|++.|++|+|+|+        ...+||.|..
T Consensus         5 ~~~DvvVIG~G~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~GGtc~~   55 (488)
T 3dgz_A            5 QSFDLLVIGGGSGGLACAKEAAQLGKKVAVADYVEPSPRGTKWGLGGTCVN   55 (488)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTSCCCCTTCHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEEecccccccccCCcCCeecc
Confidence            369999999999999999999999999999998        5678997643

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=98.43  E-value=1.2e-07  Score=85.27  Aligned_cols=42  Identities=19%  Similarity=0.296  Sum_probs=37.8

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~   44 (342)
                      |. ++||+|||||++|+++|..|++.|+ +|+|+|+++ +||.+.
T Consensus         2 m~-~~~vvIIGaG~aGl~aA~~l~~~g~~~v~lie~~~-~Gg~~~   44 (369)
T 3d1c_A            2 MQ-HHKVAIIGAGAAGIGMAITLKDFGITDVIILEKGT-VGHSFK   44 (369)
T ss_dssp             CC-EEEEEEECCSHHHHHHHHHHHHTTCCCEEEECSSS-TTHHHH
T ss_pred             Cc-cCcEEEECcCHHHHHHHHHHHHcCCCcEEEEecCC-CCCccc
Confidence            54 5899999999999999999999999 999999998 888553

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=98.42  E-value=1.2e-07  Score=84.11  Aligned_cols=42  Identities=24%  Similarity=0.297  Sum_probs=37.1

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      +.++||+|||||++|+++|..|+++|++|+|+|+. .+||.+.
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   53 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALM   53 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGG
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence            34689999999999999999999999999999975 6777654

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=98.42  E-value=1.1e-07  Score=88.30  Aligned_cols=57  Identities=19%  Similarity=0.097  Sum_probs=46.1

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+.+.+.+.+++.|++++++++|++|+.+ +++ +.+++ ++.++.||.||+|+|..|+
T Consensus       208 ~~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~-~~~-v~v~~~~g~~i~~D~vv~A~G~~p~  265 (455)
T 2yqu_A          208 LEVSRAAERVFKKQGLTIRTGVRVTAVVPE-AKG-ARVELEGGEVLEADRVLVAVGRRPY  265 (455)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEe-CCE-EEEEECCCeEEEcCEEEECcCCCcC
Confidence            456777888888899999999999999876 444 34444 6778999999999998764

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=98.41  E-value=1.6e-07  Score=81.54  Aligned_cols=60  Identities=13%  Similarity=0.057  Sum_probs=44.4

Q ss_pred             EEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          225 IYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       225 ~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .....+...+...+.+.+++.|++++. ++|++|..+  +   .|+. +|+++.+|.||+++|+.|+
T Consensus       167 ~~v~~~~~~~~~~~~~~l~~~gv~i~~-~~v~~i~~~--~---~v~~~~g~~~~~D~vi~a~G~~p~  227 (297)
T 3fbs_A          167 TFFTNGIVEPDADQHALLAARGVRVET-TRIREIAGH--A---DVVLADGRSIALAGLFTQPKLRIT  227 (297)
T ss_dssp             EEECTTTCCCCHHHHHHHHHTTCEEEC-SCEEEEETT--E---EEEETTSCEEEESEEEECCEEECC
T ss_pred             EEEECCCCCCCHHHHHHHHHCCcEEEc-ceeeeeecC--C---eEEeCCCCEEEEEEEEEccCcccC
Confidence            334344445667777888889999995 899998643  2   3444 7889999999999998764

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=98.41  E-value=1.6e-07  Score=86.95  Aligned_cols=41  Identities=29%  Similarity=0.315  Sum_probs=38.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .+||+|||||++||+||+.|+++|++|+|+|+.+.+||...
T Consensus       122 ~~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l~  162 (456)
T 2vdc_G          122 GLSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLLV  162 (456)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            47999999999999999999999999999999999999753

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=98.41  E-value=1.1e-07  Score=88.70  Aligned_cols=41  Identities=24%  Similarity=0.415  Sum_probs=38.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||||++|++||..|++.|++|+|+|+++.+||.+.
T Consensus         6 ~~dvvIIGgG~aGl~aA~~l~~~g~~V~liE~~~~~GG~~~   46 (474)
T 1zmd_A            6 DADVTVIGSGPGGYVAAIKAAQLGFKTVCIEKNETLGGTCL   46 (474)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCcCCccc
Confidence            58999999999999999999999999999999999999764

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=98.40  E-value=2.2e-07  Score=87.00  Aligned_cols=39  Identities=15%  Similarity=0.223  Sum_probs=36.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      .+||+|||||++||++|..|+++|.+|+|+|+++.+|+.
T Consensus        92 ~~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           92 NTKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             CCCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            589999999999999999999999999999999887653

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=98.38  E-value=2.2e-07  Score=81.45  Aligned_cols=39  Identities=15%  Similarity=0.305  Sum_probs=35.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~   44 (342)
                      +||+|||||++|+++|..|+++|+ +|+|+|++ .+||.+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~~g~~~v~lie~~-~~gg~~~   41 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATRGGVKNAVLFEKG-MPGGQIT   41 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCSSEEEECSS-STTCGGG
T ss_pred             ceEEEECccHHHHHHHHHHHHCCCCcEEEEcCC-CCCcccc
Confidence            799999999999999999999999 99999995 6777664

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=98.38  E-value=2.3e-07  Score=88.06  Aligned_cols=40  Identities=25%  Similarity=0.208  Sum_probs=36.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      ++||+|||||++||++|+.|+++|.+|+|+|+++.++...
T Consensus        26 ~~dVlIVGaGpaGl~~A~~La~~G~~V~vlEr~~~~~~~~   65 (549)
T 2r0c_A           26 ETDVLILGGGPVGMALALDLAHRQVGHLVVEQTDGTITHP   65 (549)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCSCCSSC
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCCCC
Confidence            4899999999999999999999999999999998765433

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=98.38  E-value=1.2e-07  Score=84.00  Aligned_cols=41  Identities=17%  Similarity=0.204  Sum_probs=37.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcC----CCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDR----NDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~----~~~~GG~~~   44 (342)
                      ++||+|||||++|+++|+.|+++|++|+|+|+    ...+||.+.
T Consensus         8 ~~~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~   52 (333)
T 1vdc_A            8 NTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLT   52 (333)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceee
Confidence            48999999999999999999999999999999    567777654

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.38  E-value=2.1e-07  Score=90.83  Aligned_cols=42  Identities=24%  Similarity=0.373  Sum_probs=39.3

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..+||+|||||++||+||+.|+++|++|+|+|+++.+||.+.
T Consensus       390 ~~~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~  431 (690)
T 3k30_A          390 SDARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVT  431 (690)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHH
T ss_pred             ccceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEee
Confidence            357999999999999999999999999999999999999865

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=98.37  E-value=1.3e-07  Score=87.82  Aligned_cols=57  Identities=16%  Similarity=0.232  Sum_probs=43.6

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--cEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g--~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|+++++++.|++|..+ ++++..... +|  .++.||.||+|+|..|+
T Consensus       213 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~  272 (464)
T 2a8x_A          213 DVSKEIEKQFKKLGVTILTATKVESIADG-GSQVTVTVTKDGVAQELKAEKVLQAIGFAPN  272 (464)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCEEEEEEEC-SSCEEEEEESSSCEEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHcCCEEEeCcEEEEEEEc-CCeEEEEEEcCCceEEEEcCEEEECCCCCcc
Confidence            45667778888889999999999999876 444432222 45  57999999999998764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=98.36  E-value=2.6e-07  Score=84.15  Aligned_cols=36  Identities=28%  Similarity=0.371  Sum_probs=32.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      .+|+|||||++||++|..|+++|++|+||||.+.+.
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~~   37 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAAS   37 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCCC
Confidence            379999999999999999999999999999976543

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=98.34  E-value=3.1e-07  Score=85.31  Aligned_cols=41  Identities=15%  Similarity=0.329  Sum_probs=38.4

Q ss_pred             ccEEEECCCchHHHHHHhhhh---CCCe---EEEEcCCCCCCCcCcc
Q 019351            5 YDVIVLGTGLKECILSGLLSV---DGLK---VLHMDRNDYYGGESSS   45 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~---~G~~---V~vlE~~~~~GG~~~t   45 (342)
                      +||+|||||++||+||..|++   .|.+   |+|||+++.+||.+..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~   49 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY   49 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence            599999999999999999999   9999   9999999999998764

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=98.34  E-value=2e-07  Score=87.22  Aligned_cols=57  Identities=18%  Similarity=0.141  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++|+++++|++|..+ +++...|++ +|+++.||.||+|+|..|+
T Consensus       232 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~~~~v~~~~G~~i~~D~vv~a~G~~p~  289 (490)
T 1fec_A          232 ELRKQLTEQLRANGINVRTHENPAKVTKN-ADGTRHVVFESGAEADYDVVMLAIGRVPR  289 (490)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCCEEEEEEC-TTSCEEEEETTSCEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEECCCcEEEcCEEEEccCCCcC
Confidence            56778888888999999999999999876 333244555 6678999999999998764

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=98.34  E-value=6.8e-07  Score=83.80  Aligned_cols=41  Identities=12%  Similarity=0.013  Sum_probs=32.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .+||||||+|.+||++|+.|.++|...+++|+.+..|+...
T Consensus        39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~   79 (501)
T 4b63_A           39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKI   79 (501)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCE
T ss_pred             cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcce
Confidence            48999999999999999999999988888888877776543

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=98.34  E-value=2.9e-07  Score=85.99  Aligned_cols=58  Identities=16%  Similarity=0.126  Sum_probs=43.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCc-----EEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE-----TAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~-----~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|+++++++.|++|..++++.+. |+. ++.     ++.||.||+|+|..|+
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~-v~~~~~~~~~~~~~~~D~vi~a~G~~p~  290 (483)
T 3dgh_A          227 QQMAELVAASMEERGIPFLRKTVPLSVEKQDDGKLL-VKYKNVETGEESEDVYDTVLWAIGRKGL  290 (483)
T ss_dssp             HHHHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEE-EEEEETTTCCEEEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEE-EEEecCCCCceeEEEcCEEEECcccccC
Confidence            356677788888899999999999999875244433 433 332     7999999999997653

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=98.33  E-value=1.9e-07  Score=86.83  Aligned_cols=57  Identities=18%  Similarity=0.093  Sum_probs=44.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--C--Cc--EEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--E--GE--TAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~--g~--~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|++++++++|++|+.+ ++++. ++.  +  |+  ++.||.||+|+|..|+
T Consensus       210 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~-~~~~~-v~~~~~~~g~~~~i~~D~vv~a~G~~p~  272 (464)
T 2eq6_A          210 PETAALLRRALEKEGIRVRTKTKAVGYEKK-KDGLH-VRLEPAEGGEGEEVVVDKVLVAVGRKPR  272 (464)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEE-TTEEE-EEEEETTCCSCEEEEESEEEECSCEEES
T ss_pred             HHHHHHHHHHHHhcCCEEEcCCEEEEEEEe-CCEEE-EEEeecCCCceeEEEcCEEEECCCcccC
Confidence            356667778888899999999999999876 44433 443  5  66  8999999999997764

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=98.32  E-value=3.2e-07  Score=87.39  Aligned_cols=39  Identities=28%  Similarity=0.414  Sum_probs=35.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC-CCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND-YYGG   41 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~-~~GG   41 (342)
                      .+|||+|||||++|+.||+.|+++|.+|+|+|++. .+|+
T Consensus        20 ~~yDVIVIGgG~AGl~AAlaLAr~G~kVlLIEk~~~~iG~   59 (641)
T 3cp8_A           20 HMYDVIVVGAGHAGCEAALAVARGGLHCLLITSDLSAVAR   59 (641)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTC
T ss_pred             CcCCEEEECccHHHHHHHHHHHHCCCcEEEEEecccccCC
Confidence            35999999999999999999999999999999985 4554

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=98.32  E-value=5.5e-07  Score=80.15  Aligned_cols=39  Identities=21%  Similarity=0.077  Sum_probs=34.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      +||+|||||++|+.||+.|+++|++|+|+|+++..+...
T Consensus         2 ~dViVIGgG~AG~~AA~~la~~G~~V~liE~~~~~~tp~   40 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLRLGVPVRLFEMRPKRMTPA   40 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTTSCCSS
T ss_pred             CCEEEECchHHHHHHHHHHHHCCCcEEEEeccCCcCCcc
Confidence            589999999999999999999999999999987555443

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.30  E-value=2.6e-07  Score=85.66  Aligned_cols=41  Identities=22%  Similarity=0.269  Sum_probs=37.4

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .++||+|||||.+|++||.+|++.|++|+|+|++ .+||.+.
T Consensus         2 ~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~gG~~~   42 (455)
T 1ebd_A            2 IETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVCL   42 (455)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhCCCeEEEEECC-CCCCcCc
Confidence            3589999999999999999999999999999998 7888653

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=98.30  E-value=4.6e-07  Score=86.04  Aligned_cols=57  Identities=14%  Similarity=0.139  Sum_probs=47.2

Q ss_pred             ChHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++. |++++++ +|++|..++++.++.|++ +|.++.||.||.|+|.++
T Consensus       194 ~~l~~~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G~~S  252 (550)
T 2e4g_A          194 HLVADFLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTATGRVFDADLFVDCSGFRG  252 (550)
T ss_dssp             HHHHHHHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEETTSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEECCCCEEECCEEEECCCCch
Confidence            46788899999988 9999999 999998753555666776 666899999999999765

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=98.30  E-value=3.1e-07  Score=84.46  Aligned_cols=34  Identities=15%  Similarity=0.173  Sum_probs=32.0

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ++||+|||||++||++|+.|+++|++|+|+|+++
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            3799999999999999999999999999999986

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.30  E-value=3e-07  Score=86.28  Aligned_cols=58  Identities=5%  Similarity=0.030  Sum_probs=45.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcE-EEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGET-AKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~-~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|+++++++.|++|+.++++. ..+++ +|++ +.||.||+|+|..|+
T Consensus       217 ~~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~~~g~~~~~~D~vi~a~G~~p~  276 (500)
T 1onf_A          217 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHLSDGRIYEHFDHVIYCVGRSPD  276 (500)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEETTSCEEEEESEEEECCCBCCT
T ss_pred             hhhHHHHHHHHHhCCCEEEECCEEEEEEEcCCce-EEEEECCCcEEEECCEEEECCCCCcC
Confidence            3566778888889999999999999998752333 34444 6777 999999999998764

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=98.30  E-value=3.8e-07  Score=82.46  Aligned_cols=34  Identities=18%  Similarity=0.307  Sum_probs=32.6

Q ss_pred             cEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~   39 (342)
                      ||+|||||++||++|+.|+++  |.+|+|+|+++.+
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            899999999999999999999  9999999998776

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=98.29  E-value=2.7e-07  Score=87.28  Aligned_cols=38  Identities=32%  Similarity=0.538  Sum_probs=34.4

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      .+||+||||||.+|+++|.+|++ |.+|+|||++...++
T Consensus        25 ~~yD~IIVGsG~AG~v~A~rLse-g~~VlvLEaG~~~~~   62 (536)
T 1ju2_A           25 GSYDYVIVGGGTSGCPLAATLSE-KYKVLVLERGSLPTA   62 (536)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTT-TSCEEEECSSBCGGG
T ss_pred             CcccEEEECccHHHHHHHHHHhc-CCcEEEEecCCCcCC
Confidence            35999999999999999999999 999999999876543

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=98.29  E-value=2.1e-07  Score=87.31  Aligned_cols=57  Identities=16%  Similarity=0.154  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++|+++++|++|..+ ++++.....++.++.||.||+|+|..|+
T Consensus       224 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~-~~~v~v~~~~g~~i~aD~Vv~a~G~~p~  280 (499)
T 1xdi_A          224 DAALVLEESFAERGVRLFKNARAASVTRT-GAGVLVTMTDGRTVEGSHALMTIGSVPN  280 (499)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEC-SSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEe-CCEEEEEECCCcEEEcCEEEECCCCCcC
Confidence            56778888888999999999999999876 5554333336778999999999998764

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=98.29  E-value=2.5e-07  Score=85.90  Aligned_cols=40  Identities=13%  Similarity=0.248  Sum_probs=37.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||||.+|++||.+|++.|++|+|+|+ +.+||.+.
T Consensus         5 ~~dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            58999999999999999999999999999999 78898765

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=98.27  E-value=5e-07  Score=85.82  Aligned_cols=36  Identities=19%  Similarity=0.374  Sum_probs=33.4

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~   38 (342)
                      ++||+||||||.+|+++|.+|++.| .+|+|||+++.
T Consensus         5 ~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~   41 (577)
T 3q9t_A            5 SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIG   41 (577)
T ss_dssp             CEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCS
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence            4699999999999999999999998 79999999765

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=98.27  E-value=4.4e-07  Score=85.68  Aligned_cols=57  Identities=7%  Similarity=0.081  Sum_probs=45.8

Q ss_pred             ChHHHHHHHHHHH-cCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++ .|++++.+ .|++|..++++.++.|++ +|+++.||.||.|+|.++
T Consensus       175 ~~l~~~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG~~S  233 (526)
T 2pyx_A          175 AKFSQLLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITKQNGEISGQLFIDCTGAKS  233 (526)
T ss_dssp             HHHHHHHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECSGGGC
T ss_pred             HHHHHHHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEECCCCEEEcCEEEECCCcch
Confidence            4677888888888 89999999 599998763455556666 667899999999998865

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=98.26  E-value=6e-07  Score=78.59  Aligned_cols=39  Identities=23%  Similarity=0.448  Sum_probs=35.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||||++|+++|..|+++|++|+|+|+  .+||.+.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            47999999999999999999999999999986  4787764

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=98.26  E-value=6.5e-07  Score=71.86  Aligned_cols=50  Identities=16%  Similarity=0.105  Sum_probs=38.7

Q ss_pred             HHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          238 FARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       238 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      +.+.+++.|++++++ +|++++.+ ++. +.++++++++.||.||+|+|..|.
T Consensus        62 l~~~~~~~gv~v~~~-~v~~i~~~-~~~-~~v~~~~g~i~ad~vI~A~G~~~~  111 (180)
T 2ywl_A           62 LEAHARRYGAEVRPG-VVKGVRDM-GGV-FEVETEEGVEKAERLLLCTHKDPT  111 (180)
T ss_dssp             HHHHHHHTTCEEEEC-CCCEEEEC-SSS-EEEECSSCEEEEEEEEECCTTCCH
T ss_pred             HHHHHHHcCCEEEeC-EEEEEEEc-CCE-EEEEECCCEEEECEEEECCCCCCC
Confidence            345556679999999 99999876 444 456664448999999999998874

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.25  E-value=6.2e-07  Score=87.93  Aligned_cols=41  Identities=22%  Similarity=0.345  Sum_probs=38.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .+||+|||||++||+||..|+++|++|+|+|+++.+||.+.
T Consensus       389 ~~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~  429 (729)
T 1o94_A          389 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLN  429 (729)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHH
T ss_pred             CceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeee
Confidence            47999999999999999999999999999999999999765

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=98.25  E-value=3.2e-07  Score=85.94  Aligned_cols=41  Identities=22%  Similarity=0.241  Sum_probs=38.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      ++||+|||||++|++||+.|+++ ++|+|+|+++++||....
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~~  148 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMWL  148 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGGG
T ss_pred             cCCEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeeec
Confidence            47999999999999999999999 999999999999998753

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=98.23  E-value=4.6e-07  Score=84.16  Aligned_cols=39  Identities=28%  Similarity=0.330  Sum_probs=36.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-----CeEEEEcCCCCCCCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-----LKVLHMDRNDYYGGE   42 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-----~~V~vlE~~~~~GG~   42 (342)
                      .+||+|||||++||++|..|+++|     .+|+|||+++.+|..
T Consensus        30 ~~dVvIIGaG~aGl~aA~~L~~~g~~~~~~~v~liE~~~~~g~~   73 (463)
T 3s5w_A           30 VHDLIGVGFGPSNIALAIALQERAQAQGALEVLFLDKQGDYRWH   73 (463)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHHHHHCCCCEEEEESCSSCCSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHhcccccCcccEEEEecCCCCCCc
Confidence            479999999999999999999999     999999999988843

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=98.23  E-value=1.9e-05  Score=71.76  Aligned_cols=46  Identities=20%  Similarity=0.002  Sum_probs=35.4

Q ss_pred             HHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          243 AVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       243 ~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      +..|+++++++.+..++.+ ++.......+|+++.||.||++++..+
T Consensus       213 ~~~gi~v~~~~~v~~v~~~-~~~~~v~~~~g~~i~~D~vi~~~g~~~  258 (401)
T 3vrd_B          213 ENALIEWHPGPDAAVVKTD-TEAMTVETSFGETFKAAVINLIPPQRA  258 (401)
T ss_dssp             TTCSEEEECTTTTCEEEEE-TTTTEEEETTSCEEECSEEEECCCEEE
T ss_pred             HhcCcEEEeCceEEEEEec-ccceEEEcCCCcEEEeeEEEEecCcCC
Confidence            4679999999999999876 333333344788999999999987543

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=98.22  E-value=5.1e-07  Score=91.13  Aligned_cols=41  Identities=27%  Similarity=0.347  Sum_probs=39.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||||++|++||..|+++|++|+|+|+++.+||.+.
T Consensus       128 ~~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          128 HTDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            58999999999999999999999999999999999999887

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=98.21  E-value=6.5e-07  Score=84.43  Aligned_cols=57  Identities=9%  Similarity=-0.066  Sum_probs=46.7

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      .++...+.+..++.|+++++++.|.++... ++++.....++.++.+|.|++|+|-.|
T Consensus       263 ~ei~~~l~~~l~~~gi~~~~~~~v~~~~~~-~~~~~v~~~~~~~~~~D~vLvAvGR~P  319 (542)
T 4b1b_A          263 QQCAVKVKLYMEEQGVMFKNGILPKKLTKM-DDKILVEFSDKTSELYDTVLYAIGRKG  319 (542)
T ss_dssp             HHHHHHHHHHHHHTTCEEEETCCEEEEEEE-TTEEEEEETTSCEEEESEEEECSCEEE
T ss_pred             hhHHHHHHHHHHhhcceeecceEEEEEEec-CCeEEEEEcCCCeEEEEEEEEcccccC
Confidence            467778888889999999999999999887 565444444778899999999998665

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=98.21  E-value=5.4e-07  Score=84.79  Aligned_cols=57  Identities=16%  Similarity=0.168  Sum_probs=47.0

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++.|++++.+ +|++|..++++.++.|++ +|.+++||.||.|+|.++
T Consensus       173 ~~l~~~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G~~S  230 (511)
T 2weu_A          173 DEVARYLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTKQHGEISGDLFVDCTGFRG  230 (511)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEESSSCEEECSEEEECCGGGC
T ss_pred             HHHHHHHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCCcch
Confidence            467888889888899999999 999998753555666776 566899999999999864

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.17  E-value=1.4e-06  Score=84.72  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=38.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .+||+|||||++|++||..|+++|++|+|+|+++.+||...
T Consensus       373 ~~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          373 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            47999999999999999999999999999999999998754

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=98.17  E-value=1.2e-06  Score=83.20  Aligned_cols=37  Identities=35%  Similarity=0.477  Sum_probs=34.2

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      .+||+||||+|.+|+++|.+|+++|++|+|||++...
T Consensus         6 ~~~D~iIvG~G~aG~~~A~~L~~~g~~VlvlE~g~~~   42 (546)
T 1kdg_A            6 TPYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGGPS   42 (546)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CceeEEEECcCHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence            4699999999999999999999999999999998753

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=98.16  E-value=1.6e-06  Score=79.79  Aligned_cols=57  Identities=21%  Similarity=0.338  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEE--cCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEF--DEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++++++++|++|..  + ++++..|++ +|.++.||.||+|+|..|+
T Consensus       192 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~v~~v~~~~G~~i~~D~Vv~a~G~~p~  251 (431)
T 1q1r_A          192 PVSAFYEHLHREAGVDIRTGTQVCGFEMSTD-QQKVTAVLCEDGTRLPADLVIAGIGLIPN  251 (431)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEECTT-TCCEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEeccC-CCcEEEEEeCCCCEEEcCEEEECCCCCcC
Confidence            4666777888889999999999999987  4 566666766 7778999999999998764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=98.14  E-value=1.5e-06  Score=78.65  Aligned_cols=56  Identities=16%  Similarity=0.162  Sum_probs=45.9

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++++++++|++|+.+ ++. ..+++ +|+++.||.||+|+|..|+
T Consensus       188 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~i~~d~vv~a~G~~p~  244 (384)
T 2v3a_A          188 AAAKAVQAGLEGLGVRFHLGPVLASLKKA-GEG-LEAHLSDGEVIPCDLVVSAVGLRPR  244 (384)
T ss_dssp             HHHHHHHHHHHTTTCEEEESCCEEEEEEE-TTE-EEEEETTSCEEEESEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEec-CCE-EEEEECCCCEEECCEEEECcCCCcC
Confidence            46778888888899999999999999876 444 34444 7788999999999998764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=98.13  E-value=9.9e-07  Score=81.64  Aligned_cols=43  Identities=16%  Similarity=0.164  Sum_probs=38.2

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhh-C------CCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSV-D------GLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~-~------G~~V~vlE~~~~~GG~~~   44 (342)
                      |. .+||+|||||++|+.||..|++ .      |++|+|+|+.+.+||.+.
T Consensus         1 m~-~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            1 MR-PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             -C-CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CC-CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            54 4799999999999999999999 7      999999999999998763

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=98.12  E-value=1.5e-06  Score=82.56  Aligned_cols=35  Identities=23%  Similarity=0.387  Sum_probs=32.3

Q ss_pred             CcccEEEECCCchHHHHHHhhhhC-CCeEEEEcCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVD-GLKVLHMDRND   37 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~~~   37 (342)
                      ++||+||||||.+|+++|.+|++. |.+|+|||+++
T Consensus        18 ~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~   53 (583)
T 3qvp_A           18 RTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGS   53 (583)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSC
T ss_pred             CCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCC
Confidence            469999999999999999999975 79999999976

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=98.12  E-value=1.6e-06  Score=80.16  Aligned_cols=55  Identities=20%  Similarity=0.202  Sum_probs=44.3

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++. +++++++.|.++..+ + ++..+.++++++.||.||+|+|..|+
T Consensus       191 ~~~~~l~~~l~~~-v~i~~~~~v~~i~~~-~-~v~~v~~~g~~i~~D~Vv~a~G~~p~  245 (449)
T 3kd9_A          191 EVTDILEEKLKKH-VNLRLQEITMKIEGE-E-RVEKVVTDAGEYKAELVILATGIKPN  245 (449)
T ss_dssp             HHHHHHHHHHTTT-SEEEESCCEEEEECS-S-SCCEEEETTEEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHhC-cEEEeCCeEEEEecc-C-cEEEEEeCCCEEECCEEEEeeCCccC
Confidence            4566677777777 999999999999754 3 55556778889999999999998764

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=98.10  E-value=1.9e-06  Score=81.13  Aligned_cols=40  Identities=23%  Similarity=0.476  Sum_probs=36.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..+||+|||||++|++||.+|+++|++|+|+|+  .+||.+.
T Consensus       211 ~~~dVvIIGgG~AGl~aA~~la~~G~~v~lie~--~~GG~~~  250 (521)
T 1hyu_A          211 DAYDVLIVGSGPAGAAAAVYSARKGIRTGLMGE--RFGGQVL  250 (521)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHHTTCCEEEECS--STTGGGT
T ss_pred             CcccEEEECCcHHHHHHHHHHHhCCCeEEEEEC--CCCCccc
Confidence            358999999999999999999999999999996  5788765

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=98.09  E-value=2.3e-06  Score=82.97  Aligned_cols=36  Identities=28%  Similarity=0.383  Sum_probs=33.7

Q ss_pred             cccEEEECCCchHHHHHHhhhh-----CCCeEEEEcCCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSV-----DGLKVLHMDRNDYY   39 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~-----~G~~V~vlE~~~~~   39 (342)
                      ++||+|||||++||++|..|++     .|.+|+|+|+++.+
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~~   48 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCCC
Confidence            5899999999999999999999     99999999998654

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.08  E-value=2.2e-06  Score=87.06  Aligned_cols=40  Identities=23%  Similarity=0.439  Sum_probs=37.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~~GG~~   43 (342)
                      .+||+|||||.+|++||.+|+++|+ +|+|+|+.+.+||..
T Consensus       187 ~~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          187 SAKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             GCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CCEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            4799999999999999999999999 799999999999974

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=98.05  E-value=2.1e-06  Score=81.41  Aligned_cols=37  Identities=19%  Similarity=0.353  Sum_probs=33.9

Q ss_pred             cccEEEECCCchHHHHHHhhhh-CCCeEEEEcCCCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYYG   40 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~-~G~~V~vlE~~~~~G   40 (342)
                      +||+||||||.+|+++|.+|++ .|.+|+|||+++...
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~   39 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDE   39 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCT
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCccc
Confidence            5899999999999999999998 789999999987653

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=98.05  E-value=2.8e-06  Score=81.55  Aligned_cols=34  Identities=26%  Similarity=0.295  Sum_probs=31.8

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .++||+|||||.+|++||.+|++.|++|+|+|+.
T Consensus       106 ~~~dvvVIG~GpAGl~aA~~l~~~g~~v~liE~~  139 (598)
T 2x8g_A          106 YDYDLIVIGGGSGGLAAGKEAAKYGAKTAVLDYV  139 (598)
T ss_dssp             SSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCC
T ss_pred             ccccEEEECCCccHHHHHHHHHhCCCeEEEEecc
Confidence            3589999999999999999999999999999983

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=98.04  E-value=2.8e-06  Score=78.29  Aligned_cols=39  Identities=26%  Similarity=0.401  Sum_probs=35.8

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhh---CCCeEEEEcCCCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSV---DGLKVLHMDRNDYY   39 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~---~G~~V~vlE~~~~~   39 (342)
                      |+.+.||+|||||++|++||..|++   .|++|+|+|+++..
T Consensus         1 M~~m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            1 MRGSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             CTTSCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCCCCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            6666799999999999999999999   89999999998864

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=98.02  E-value=3.1e-06  Score=79.16  Aligned_cols=56  Identities=20%  Similarity=0.157  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|+++++++.|++|..+ ++++ .|++ +|+++.||.||+|+|..|+
T Consensus       227 ~~~~~~~~~l~~~GV~v~~~~~V~~i~~~-~~~~-~v~l~dG~~i~aD~Vv~a~G~~pn  283 (493)
T 1m6i_A          227 YLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKL-LIKLKDGRKVETDHIVAAVGLEPN  283 (493)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEE-EEEETTSCEEEESEEEECCCEEEC
T ss_pred             HHHHHHHHHHHhcCCEEEeCCEEEEEEec-CCeE-EEEECCCCEEECCEEEECCCCCcc
Confidence            46667778888899999999999999865 4544 4554 7789999999999997764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=97.99  E-value=3.6e-06  Score=77.98  Aligned_cols=40  Identities=15%  Similarity=0.024  Sum_probs=37.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC--CeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~~~GG~~   43 (342)
                      .+||+|||||++|+.+|..|++.|  .+|+|+|+.+.+||..
T Consensus         6 ~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~   47 (460)
T 1cjc_A            6 TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLV   47 (460)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHH
T ss_pred             CceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCcee
Confidence            479999999999999999999998  9999999999998765

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=97.98  E-value=4.3e-06  Score=80.06  Aligned_cols=56  Identities=7%  Similarity=-0.029  Sum_probs=44.4

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|++++++++|++|..+ ++.  .+..+|+++.||.||+|+|..|+
T Consensus       228 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~-~~~--v~~~~g~~i~~D~Vi~a~G~~p~  283 (588)
T 3ics_A          228 YEMAAYVHEHMKNHDVELVFEDGVDALEEN-GAV--VRLKSGSVIQTDMLILAIGVQPE  283 (588)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEGG-GTE--EEETTSCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHHcCCEEEECCeEEEEecC-CCE--EEECCCCEEEcCEEEEccCCCCC
Confidence            356777888888999999999999999754 332  22347789999999999998764

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=97.97  E-value=4.8e-06  Score=75.97  Aligned_cols=52  Identities=23%  Similarity=0.204  Sum_probs=42.9

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++++++++|++|+ + +    .|++ +|.++.||.||+|+|..|+
T Consensus       188 ~~~~~l~~~l~~~GV~i~~~~~v~~i~-~-~----~v~~~~g~~i~~D~vi~a~G~~p~  240 (408)
T 2gqw_A          188 TLADFVARYHAAQGVDLRFERSVTGSV-D-G----VVLLDDGTRIAADMVVVGIGVLAN  240 (408)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEE-T-T----EEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHcCcEEEeCCEEEEEE-C-C----EEEECCCCEEEcCEEEECcCCCcc
Confidence            466777888889999999999999997 4 3    3444 7789999999999998764

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.96  E-value=5.2e-05  Score=70.12  Aligned_cols=34  Identities=24%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -+|+|||||.+|+.+|..|++.|.+|+++|+++.
T Consensus       168 ~~vvIiGgG~~g~e~A~~l~~~g~~V~lv~~~~~  201 (455)
T 2yqu_A          168 KRLIVVGGGVIGLELGVVWHRLGAEVIVLEYMDR  201 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCCc
Confidence            3799999999999999999999999999999754

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=97.96  E-value=3.1e-06  Score=77.23  Aligned_cols=53  Identities=19%  Similarity=0.142  Sum_probs=42.6

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++++++++|++|+.   ++  .+..+|+++.||.||+++|+.+.
T Consensus       219 ~~~~~~~~~l~~~gV~~~~~~~v~~i~~---~~--v~~~~g~~~~~D~vi~a~G~~~~  271 (409)
T 3h8l_A          219 NSRKAVASIYNQLGIKLVHNFKIKEIRE---HE--IVDEKGNTIPADITILLPPYTGN  271 (409)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEECS---SE--EEETTSCEEECSEEEEECCEECC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCceEEECC---Ce--EEECCCCEEeeeEEEECCCCCcc
Confidence            5677788888899999999999999853   22  23347889999999999988764

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=97.95  E-value=6e-06  Score=75.36  Aligned_cols=56  Identities=13%  Similarity=0.088  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+.+.+.+.+++.|+++++++.|++|..+  +++..|++ +|+++.||.||+|+|+.|+
T Consensus       186 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~v~~~dg~~i~aD~Vv~a~G~~p~  242 (410)
T 3ef6_A          186 RIGAWLRGLLTELGVQVELGTGVVGFSGE--GQLEQVMASDGRSFVADSALICVGAEPA  242 (410)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEECS--SSCCEEEETTSCEEECSEEEECSCEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEecc--CcEEEEEECCCCEEEcCEEEEeeCCeec
Confidence            45667778888899999999999999764  34556666 7889999999999998764

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=97.94  E-value=6.5e-05  Score=67.80  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=32.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  180 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSSGGYQLDVVAPCEQV  180 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCcch
Confidence            47999999999999999999999999999997654

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=97.90  E-value=6.4e-06  Score=76.07  Aligned_cols=56  Identities=20%  Similarity=0.180  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|++++++++|++|..+  +++..+.++++++.||.||+|+|..|+
T Consensus       192 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~--~~v~~v~~~~~~i~~d~vi~a~G~~p~  247 (447)
T 1nhp_A          192 EFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVTDKNAYDADLVVVAVGVRPN  247 (447)
T ss_dssp             HHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEESSCEEECSEEEECSCEEES
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEcc--CcEEEEEECCCEEECCEEEECcCCCCC
Confidence            56677888888899999999999999754  445456677889999999999997764

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.89  E-value=7.1e-06  Score=76.51  Aligned_cols=57  Identities=16%  Similarity=0.142  Sum_probs=47.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+.+++.|++++++++|++|..+  +++..+.++++++.||.||+|+|..|+
T Consensus       227 ~~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~--~~v~~v~~~~~~i~~D~vi~a~G~~p~  283 (480)
T 3cgb_A          227 GDMAEYIYKEADKHHIEILTNENVKAFKGN--ERVEAVETDKGTYKADLVLVSVGVKPN  283 (480)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEES--SBEEEEEETTEEEECSEEEECSCEEES
T ss_pred             HHHHHHHHHHHHHcCcEEEcCCEEEEEEcC--CcEEEEEECCCEEEcCEEEECcCCCcC
Confidence            356677888888999999999999999864  456667777789999999999998764

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=97.88  E-value=6.8e-06  Score=76.83  Aligned_cols=56  Identities=18%  Similarity=0.222  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+...+.+.+++.|+++++++.|++|+.  ++++..+.++++++.||.||+|+|..|+
T Consensus       237 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~--~~~v~~v~~~g~~i~~D~Vi~a~G~~p~  292 (490)
T 2bc0_A          237 DLTDLMAKNMEEHGIQLAFGETVKEVAG--NGKVEKIITDKNEYDVDMVILAVGFRPN  292 (490)
T ss_dssp             HHHHHHHHHHHTTTCEEEETCCEEEEEC--SSSCCEEEESSCEEECSEEEECCCEEEC
T ss_pred             HHHHHHHHHHHhCCeEEEeCCEEEEEEc--CCcEEEEEECCcEEECCEEEECCCCCcC
Confidence            4666777888889999999999999975  3455556668889999999999998764

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.87  E-value=9.2e-06  Score=72.97  Aligned_cols=51  Identities=24%  Similarity=0.383  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCc
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+.+.+.+.+++.|++++++++|++++ .  +   .+++ +|+ +.+|.||+|+|..|+
T Consensus       184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~-~--~---~v~~~~g~-i~~D~vi~a~G~~p~  235 (367)
T 1xhc_A          184 ELSNMIKDMLEETGVKFFLNSELLEAN-E--E---GVLTNSGF-IEGKVKICAIGIVPN  235 (367)
T ss_dssp             HHHHHHHHHHHHTTEEEECSCCEEEEC-S--S---EEEETTEE-EECSCEEEECCEEEC
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEE-e--e---EEEECCCE-EEcCEEEECcCCCcC
Confidence            456677788888999999999999985 2  2   2444 555 999999999998764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.86  E-value=0.00011  Score=67.78  Aligned_cols=35  Identities=26%  Similarity=0.248  Sum_probs=31.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+.+
T Consensus       168 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  202 (450)
T 1ges_A          168 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAP  202 (450)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCEEEEEEeCCch
Confidence            37999999999999999999999999999997543

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=97.85  E-value=1e-05  Score=77.30  Aligned_cols=37  Identities=30%  Similarity=0.497  Sum_probs=33.9

Q ss_pred             CcccEEEECCCchHHHHHHhhhh-CCCeEEEEcCCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYY   39 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~-~G~~V~vlE~~~~~   39 (342)
                      .+||+||||+|.+|+++|.+|++ .|.+|+|||++...
T Consensus        23 ~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~   60 (587)
T 1gpe_A           23 KTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE   60 (587)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCC
T ss_pred             ccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCcc
Confidence            35999999999999999999999 89999999997654

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=97.83  E-value=0.00016  Score=66.37  Aligned_cols=35  Identities=14%  Similarity=0.186  Sum_probs=31.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+.+
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~G~~Vtlv~~~~~~  184 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARV  184 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCcc
Confidence            47999999999999999999999999999986543

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.79  E-value=0.00015  Score=67.15  Aligned_cols=35  Identities=17%  Similarity=0.150  Sum_probs=31.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+|+|||||..|+-+|..|++.|.+|+|+|+.+++
T Consensus       170 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~  204 (464)
T 2eq6_A          170 KRLLVIGGGAVGLELGQVYRRLGAEVTLIEYMPEI  204 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEEcCCcc
Confidence            37999999999999999999999999999997543

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=97.78  E-value=0.00013  Score=68.02  Aligned_cols=34  Identities=29%  Similarity=0.346  Sum_probs=31.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -+|+|||||.+|+-+|..|++.|.+|+++|+.+.
T Consensus       187 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~  220 (480)
T 3cgb_A          187 EDVTIIGGGAIGLEMAETFVELGKKVRMIERNDH  220 (480)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEEeCCc
Confidence            4799999999999999999999999999998643

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=97.78  E-value=1.9e-05  Score=71.36  Aligned_cols=38  Identities=11%  Similarity=0.126  Sum_probs=35.0

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      ..+|+|||||++|++||..|...+.+|+|+|+++.++.
T Consensus         9 ~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y   46 (385)
T 3klj_A            9 STKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY   46 (385)
T ss_dssp             BCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB
T ss_pred             CCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc
Confidence            47999999999999999999888899999999998764

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.73  E-value=0.00023  Score=65.87  Aligned_cols=35  Identities=29%  Similarity=0.343  Sum_probs=31.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+.+
T Consensus       167 ~~vvVvGgG~~g~e~A~~l~~~G~~Vtlv~~~~~~  201 (463)
T 2r9z_A          167 KRVAIIGAGYIGIELAGLLRSFGSEVTVVALEDRL  201 (463)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            36999999999999999999999999999987543

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=97.69  E-value=2e-05  Score=72.34  Aligned_cols=55  Identities=18%  Similarity=0.184  Sum_probs=39.9

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C--CcEEEcCEEEECCCCCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E--GETAKCKKVVCDPSYLP  289 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~--g~~~~a~~vI~~~~~~~  289 (342)
                      .....+.+.+..+++|+++++++.|++|+   .+++. ++. +  ++++.||.||.++|..+
T Consensus       199 ~~~~~~~l~~~l~~~GV~~~~~~~v~~v~---~~~~~-~~~~~g~~~~i~~d~vi~~~G~~~  256 (430)
T 3hyw_A          199 IGASKRLVEDLFAERNIDWIANVAVKAIE---PDKVI-YEDLNGNTHEVPAKFTMFMPSFQG  256 (430)
T ss_dssp             STTHHHHHHHHHHHTTCEEECSCEEEEEC---SSEEE-EECTTSCEEEEECSEEEEECEEEC
T ss_pred             hHHHHHHHHHHHHhCCeEEEeCceEEEEe---CCceE-EEeeCCCceEeecceEEEeccCCC
Confidence            34555667777788999999999999985   33433 333 3  35799999999887654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.67  E-value=0.00028  Score=65.64  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=31.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -+++|||||..|+-+|..|++.|.+|+++|+.++
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~  219 (479)
T 2hqm_A          186 KKVVVVGAGYIGIELAGVFHGLGSETHLVIRGET  219 (479)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEeCCc
Confidence            3699999999999999999999999999998654

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.67  E-value=0.0005  Score=64.28  Aligned_cols=34  Identities=15%  Similarity=0.276  Sum_probs=31.3

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      .|+|||||..|+-+|..|++.|.+|+++|+.+++
T Consensus       178 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~  211 (500)
T 1onf_A          178 KIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI  211 (500)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             eEEEECChHHHHHHHHHHHHcCCeEEEEecCCcc
Confidence            6999999999999999999999999999987543

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=97.63  E-value=3.4e-05  Score=70.97  Aligned_cols=54  Identities=13%  Similarity=0.088  Sum_probs=42.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...+.+..++.|+++++++.|++++.   ..  .+..+|+++.||.||+|+|..|+
T Consensus       188 ~~~~~~~~~~l~~~gV~i~~~~~v~~~~~---~~--v~~~~g~~~~~D~vl~a~G~~Pn  241 (437)
T 4eqs_A          188 ADMNQPILDELDKREIPYRLNEEINAING---NE--ITFKSGKVEHYDMIIEGVGTHPN  241 (437)
T ss_dssp             GGGGHHHHHHHHHTTCCEEESCCEEEEET---TE--EEETTSCEEECSEEEECCCEEES
T ss_pred             chhHHHHHHHhhccceEEEeccEEEEecC---Ce--eeecCCeEEeeeeEEEEeceecC
Confidence            46677788888899999999999998852   22  23458889999999999987653

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=97.61  E-value=3.5e-05  Score=72.14  Aligned_cols=35  Identities=17%  Similarity=0.323  Sum_probs=32.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      +.+|+|||||.+|+++|..|++.+++|+|+|++++
T Consensus        42 KprVVIIGgG~AGl~~A~~L~~~~~~VtLId~~~~   76 (502)
T 4g6h_A           42 KPNVLILGSGWGAISFLKHIDTKKYNVSIISPRSY   76 (502)
T ss_dssp             SCEEEEECSSHHHHHHHHHSCTTTCEEEEEESSSE
T ss_pred             CCCEEEECCcHHHHHHHHHhhhCCCcEEEECCCCC
Confidence            46799999999999999999999999999999874

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.50  E-value=0.00037  Score=64.87  Aligned_cols=32  Identities=13%  Similarity=0.213  Sum_probs=29.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -+++|||||..|+-+|..|++.|.+|+++|+.
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~G~~Vtlv~~~  217 (482)
T 1ojt_A          186 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMM  217 (482)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEEC
Confidence            37999999999999999999999999999985

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.49  E-value=0.00082  Score=62.16  Aligned_cols=34  Identities=18%  Similarity=0.171  Sum_probs=31.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.++
T Consensus       172 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~  205 (464)
T 2a8x_A          172 KSIIIAGAGAIGMEFGYVLKNYGVDVTIVEFLPR  205 (464)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSS
T ss_pred             CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcCCc
Confidence            3799999999999999999999999999999754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.48  E-value=0.00086  Score=62.10  Aligned_cols=32  Identities=19%  Similarity=0.253  Sum_probs=29.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -.++|||+|..|+-+|..|++.|.+|+++|+.
T Consensus       175 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  206 (468)
T 2qae_A          175 KTMVVIGGGVIGLELGSVWARLGAEVTVVEFA  206 (468)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCEEEEEecC
Confidence            36999999999999999999999999999885

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.31  E-value=0.0014  Score=61.10  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=29.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.
T Consensus       199 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  230 (491)
T 3urh_A          199 ASMIVVGGGVIGLELGSVWARLGAKVTVVEFL  230 (491)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEecc
Confidence            36899999999999999999999999999875

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.59  E-value=0.0018  Score=59.58  Aligned_cols=38  Identities=26%  Similarity=0.267  Sum_probs=34.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      ..+++|||+|.+|+.+|..|++.|.+|+++|+.+.+..
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  186 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG  186 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCccccc
Confidence            36899999999999999999999999999999887655

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=96.58  E-value=0.0016  Score=58.57  Aligned_cols=39  Identities=13%  Similarity=0.035  Sum_probs=35.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      -+|+|||||..|+-+|..|++.|.+|+|+|+.+++..+.
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~~g~~Vtvv~~~~~~l~~~  185 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIIDSGTPASIGIILEYPLERQ  185 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchhh
Confidence            379999999999999999999999999999998876653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=96.48  E-value=0.0023  Score=55.64  Aligned_cols=35  Identities=23%  Similarity=0.189  Sum_probs=32.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      +|+|||||..|+-+|..|++.|.+|+|+|+.+++-
T Consensus       147 ~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~~  181 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELR  181 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSCC
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCEEEEEecccccC
Confidence            69999999999999999999999999999987653

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=96.40  E-value=0.0031  Score=47.49  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .+|+|+|+|..|...|..|++.|++|+++|++
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            47999999999999999999999999999985

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=96.37  E-value=0.0032  Score=47.80  Aligned_cols=33  Identities=12%  Similarity=0.289  Sum_probs=30.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -+|+|+|.|-.|...|..|.+.|++|+++|+++
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            469999999999999999999999999999963

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=96.37  E-value=0.0042  Score=47.89  Aligned_cols=35  Identities=17%  Similarity=0.068  Sum_probs=31.7

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      |.. -.|+|+|+|-.|...|..|.+.|++|+++|++
T Consensus         1 ~~~-~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A            1 HRK-DHFIVCGHSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CCC-SCEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCC-CcEEEECCCHHHHHHHHHHHHCCCCEEEEECC
Confidence            443 47999999999999999999999999999986

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=96.34  E-value=0.0031  Score=48.76  Aligned_cols=33  Identities=24%  Similarity=0.498  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|+|+|+|..|..+|..|.+.|.+|+++|+++
T Consensus        20 ~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           20 KYIVIFGCGRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.33  E-value=0.0027  Score=58.56  Aligned_cols=37  Identities=16%  Similarity=0.101  Sum_probs=34.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||||.+|+-+|..|++.|.+|+++|+.+.+..
T Consensus       172 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  208 (458)
T 1lvl_A          172 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERILP  208 (458)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEEcCCcccc
Confidence            3799999999999999999999999999999987754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=96.32  E-value=0.0038  Score=47.30  Aligned_cols=32  Identities=34%  Similarity=0.508  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|+|+|+|-.|...|..|.++|++|+++|++
T Consensus         7 ~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~   38 (141)
T 3llv_A            7 YEYIVIGSEAAGVGLVRELTAAGKKVLAVDKS   38 (141)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECC
Confidence            47999999999999999999999999999985

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=96.30  E-value=0.0093  Score=49.44  Aligned_cols=36  Identities=22%  Similarity=0.410  Sum_probs=32.9

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |+ ++||+|||||++|+.+|..|++.|.+|+|+|++.
T Consensus         1 M~-~~dVvVVGgG~aGl~aA~~la~~g~~v~lie~~~   36 (232)
T 2cul_A            1 MA-AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSL   36 (232)
T ss_dssp             -C-CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCG
T ss_pred             CC-CCCEEEECcCHHHHHHHHHHHHCCCCEEEEecCC
Confidence            54 4899999999999999999999999999999984

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=96.26  E-value=0.011  Score=46.60  Aligned_cols=33  Identities=39%  Similarity=0.539  Sum_probs=31.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +||+|||||++|+.+|..|++.|.+|+|+|+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLARAGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            799999999999999999999999999999975

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=96.22  E-value=0.0046  Score=53.08  Aligned_cols=37  Identities=30%  Similarity=0.334  Sum_probs=33.0

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |++...|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         1 Mm~~~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A            1 MTGITNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            5544589999999999999999999999999999864

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.20  E-value=0.0039  Score=57.44  Aligned_cols=37  Identities=19%  Similarity=0.152  Sum_probs=33.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  207 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS  207 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            4799999999999999999999999999999887654

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.19  E-value=0.0037  Score=55.86  Aligned_cols=37  Identities=27%  Similarity=0.440  Sum_probs=34.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+++|||||..|+-+|..|++.|.+|+++|+.+++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  180 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFLG  180 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCTT
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCeecc
Confidence            3799999999999999999999999999999887655

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=96.16  E-value=0.0046  Score=57.32  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=34.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+++..
T Consensus       184 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  220 (478)
T 1v59_A          184 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIGA  220 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSS
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcccc
Confidence            3799999999999999999999999999999988765

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=96.05  E-value=0.011  Score=55.04  Aligned_cols=40  Identities=18%  Similarity=0.263  Sum_probs=37.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhC---CCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVD---GLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~---G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||||++|++||++|++.   |++|+|+|+++ +||.+.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~   44 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAV   44 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCccc
Confidence            47999999999999999999999   99999999998 888754

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=96.04  E-value=0.0052  Score=53.25  Aligned_cols=34  Identities=26%  Similarity=0.237  Sum_probs=31.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+.
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~~G~~Vt~v~~~~~  186 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTKYGSKVIILHRRDA  186 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHHhCCeeeeeccccc
Confidence            4799999999999999999999999999998654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=95.96  E-value=0.0067  Score=54.98  Aligned_cols=38  Identities=13%  Similarity=0.218  Sum_probs=34.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+.+..+
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  183 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR  183 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEEeCCccccc
Confidence            47999999999999999999999999999998876554

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=95.95  E-value=0.017  Score=53.98  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=30.8

Q ss_pred             cccEEEECCCchHHHHHHhhhh---CCCeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSV---DGLKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~---~G~~V~vlE~~~~   38 (342)
                      .+||+|||||++|+++|+.|++   +|.+|+|+|+.+.
T Consensus         2 ~~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~   39 (511)
T 2weu_A            2 IRSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV   39 (511)
T ss_dssp             CCEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred             cceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence            3699999999999999999999   9999999999764

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=95.92  E-value=0.016  Score=54.65  Aligned_cols=38  Identities=13%  Similarity=0.267  Sum_probs=34.2

Q ss_pred             CC-CcccEEEECCCchHHHHHHhhhh---CCCeEEEEcCCCC
Q 019351            1 MD-EEYDVIVLGTGLKECILSGLLSV---DGLKVLHMDRNDY   38 (342)
Q Consensus         1 m~-~~~DViIiG~GiaGl~aA~~L~~---~G~~V~vlE~~~~   38 (342)
                      |+ ..+||+|||||++|+++|+.|++   +|.+|+|+|+.+.
T Consensus        21 M~~~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           21 MSGKIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CCSCCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            53 46899999999999999999999   9999999999753

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=95.90  E-value=0.0076  Score=43.76  Aligned_cols=32  Identities=22%  Similarity=0.447  Sum_probs=29.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~   36 (342)
                      ..|+|+|+|..|..+|..|.+.| ++|++++++
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~   38 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTSSNYSVTVADHD   38 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCceEEEEeCC
Confidence            47999999999999999999999 999999985

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=95.77  E-value=0.0085  Score=51.77  Aligned_cols=35  Identities=11%  Similarity=-0.069  Sum_probs=32.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ..+|.|||.|..|...|..|+++|++|+++++++.
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   49 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIE   49 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTT
T ss_pred             CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            45899999999999999999999999999998754

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=95.77  E-value=0.008  Score=53.32  Aligned_cols=36  Identities=31%  Similarity=0.361  Sum_probs=31.0

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      |++..+|+|||+|..|...|..|+++|++|++++++
T Consensus         1 mm~~mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~   36 (359)
T 1bg6_A            1 MIESKTYAVLGLGNGGHAFAAYLALKGQSVLAWDID   36 (359)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCCcCeEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            444568999999999999999999999999999885

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=95.76  E-value=0.0084  Score=52.42  Aligned_cols=33  Identities=30%  Similarity=0.495  Sum_probs=30.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|+|||+|.-|...|..|+++|++|+++.+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD   35 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh
Confidence            379999999999999999999999999999865

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=95.75  E-value=0.0079  Score=52.32  Aligned_cols=33  Identities=27%  Similarity=0.406  Sum_probs=30.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|||+|..|...|..++.+|++|+++|..+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHhCCCeEEEEECCH
Confidence            479999999999999999999999999999864

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=95.74  E-value=0.0099  Score=51.49  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus        16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~   48 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   48 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999863

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=95.74  E-value=0.0083  Score=52.40  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=33.6

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      |....+|+|||+|..|...|..|+++|+ +|+++|.+.
T Consensus         1 M~~~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~   38 (317)
T 2ewd_A            1 MIERRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAE   38 (317)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCc
Confidence            6666789999999999999999999998 999999864

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=95.73  E-value=0.0086  Score=52.16  Aligned_cols=33  Identities=24%  Similarity=0.367  Sum_probs=30.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|+|||+|.-|...|..|+++|++|+++.++.
T Consensus         3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~   35 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD   35 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc
Confidence            379999999999999999999999999999864

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=95.67  E-value=0.018  Score=53.13  Aligned_cols=43  Identities=30%  Similarity=0.434  Sum_probs=37.8

Q ss_pred             CCC-cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDE-EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~-~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+. ++||+|||||++|++||+.|+++|++|+|+|+ +.+||.+.
T Consensus         1 M~~~~~DVvVIGaG~aGl~aA~~la~~G~~V~liEk-~~~GG~~~   44 (463)
T 4dna_A            1 MSAFDYDLFVIGGGSGGVRSGRLAAALGKKVAIAEE-FRYGGTCV   44 (463)
T ss_dssp             --CCSEEEEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHHH
T ss_pred             CCCCCCcEEEECcCHHHHHHHHHHHhCCCEEEEEeC-CCCCCccc
Confidence            543 69999999999999999999999999999999 78888664

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=95.67  E-value=0.009  Score=55.57  Aligned_cols=37  Identities=24%  Similarity=0.252  Sum_probs=33.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+++-.
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~  231 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQRKGKEVVLIDVVDTCLA  231 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEEcccchhh
Confidence            4699999999999999999999999999999887654

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=95.64  E-value=0.01  Score=54.86  Aligned_cols=37  Identities=22%  Similarity=0.309  Sum_probs=34.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+++..
T Consensus       179 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  215 (474)
T 1zmd_A          179 EKMVVIGAGVIGVELGSVWQRLGADVTAVEFLGHVGG  215 (474)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSC
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCEEEEEeccCccCC
Confidence            3699999999999999999999999999999987655

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=95.62  E-value=0.022  Score=52.57  Aligned_cols=43  Identities=23%  Similarity=0.312  Sum_probs=39.8

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+.++||+|||||++|++||.+|++.|++|+|+|++ .+||.+.
T Consensus         1 M~~~~dvvIIGgG~aGl~aA~~l~~~g~~V~lie~~-~~GG~~~   43 (467)
T 1zk7_A            1 MEPPVQVAVIGSGGAAMAAALKAVEQGAQVTLIERG-TIGGTCV   43 (467)
T ss_dssp             CCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS-STTHHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCEEEEEeCC-CCCcccc
Confidence            777899999999999999999999999999999998 7888764

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=95.61  E-value=0.011  Score=54.97  Aligned_cols=38  Identities=26%  Similarity=0.220  Sum_probs=34.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+++...
T Consensus       175 k~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~  212 (492)
T 3ic9_A          175 KSVAVFGPGVIGLELGQALSRLGVIVKVFGRSGSVANL  212 (492)
T ss_dssp             SEEEEESSCHHHHHHHHHHHHTTCEEEEECCTTCCTTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEEECCccccc
Confidence            36999999999999999999999999999999886543

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=95.57  E-value=0.022  Score=52.86  Aligned_cols=43  Identities=21%  Similarity=0.295  Sum_probs=38.2

Q ss_pred             CcccEEEECCCchHHHHHHhhhh-CCCeEEEEc--------CCCCCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSV-DGLKVLHMD--------RNDYYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~-~G~~V~vlE--------~~~~~GG~~~t   45 (342)
                      .++||+|||||++|++||++|++ .|++|+|+|        +.+.+||.+..
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~c~~   53 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGTCVN   53 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBSCTTCHHHH
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHcCCEEEEEecccccccccCCCcCccccC
Confidence            35899999999999999999999 999999999        46788997643

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=95.57  E-value=0.012  Score=51.38  Aligned_cols=37  Identities=19%  Similarity=0.420  Sum_probs=32.5

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      |....+|+|||+|..|..+|..|+.+|+ +|.++|.+.
T Consensus         1 m~~~~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~   38 (322)
T 1t2d_A            1 MAPKAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   38 (322)
T ss_dssp             -CCCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCH
Confidence            6656689999999999999999999998 999999764

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.55  E-value=0.0092  Score=47.42  Aligned_cols=33  Identities=21%  Similarity=0.225  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhC-CCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVD-GLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~~~   37 (342)
                      -.|+|+|+|..|..+|..|.+. |++|+++|+++
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHhccCCeEEEEECCH
Confidence            3799999999999999999999 99999999863

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.54  E-value=0.01  Score=54.51  Aligned_cols=33  Identities=27%  Similarity=0.188  Sum_probs=31.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|.|||.|.+|+++|..|+++|++|++.|.+.
T Consensus        10 k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~   42 (451)
T 3lk7_A           10 KKVLVLGLARSGEAAARLLAKLGAIVTVNDGKP   42 (451)
T ss_dssp             CEEEEECCTTTHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence            479999999999999999999999999999975

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=95.53  E-value=0.02  Score=53.65  Aligned_cols=44  Identities=32%  Similarity=0.443  Sum_probs=40.1

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+.++||+|||||++|++||++|++.|++|+|+|+++.+||.+.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~~G~~V~liE~~~~~GG~~~   83 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   83 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCccc
Confidence            34568999999999999999999999999999999998998764

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=95.50  E-value=0.011  Score=44.68  Aligned_cols=32  Identities=28%  Similarity=0.241  Sum_probs=29.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -.|+|+|+|..|...|..|.+.|++|+++|++
T Consensus         7 ~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A            7 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36999999999999999999999999999985

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=95.49  E-value=0.023  Score=52.85  Aligned_cols=44  Identities=23%  Similarity=0.309  Sum_probs=39.5

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhh-CCCeEEEEc--------CCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSV-DGLKVLHMD--------RNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~-~G~~V~vlE--------~~~~~GG~~~   44 (342)
                      |+.++||+|||||.+|++||++|++ .|++|+|+|        +.+.+||.+.
T Consensus         4 M~~~~dvvVIGgG~aGl~aA~~la~~~G~~V~liE~~~~~~~~~~~~~GG~~~   56 (495)
T 2wpf_A            4 MSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPFYAALGGTCV   56 (495)
T ss_dssp             CCEEEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSBTTTBCBTTHHHH
T ss_pred             cccccCEEEECCChhHHHHHHHHHHhcCCeEEEEecccccccccCCCCCCeee
Confidence            6667999999999999999999999 999999999        4678888764

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=95.46  E-value=0.024  Score=52.77  Aligned_cols=40  Identities=13%  Similarity=0.218  Sum_probs=35.5

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYG   40 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~G   40 (342)
                      |+.++||+|||||++|++||..|.++  |.+|+|+|+++..+
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~   49 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELP   49 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCC
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCC
Confidence            45568999999999999999999887  89999999998765

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.40  E-value=0.013  Score=54.07  Aligned_cols=35  Identities=29%  Similarity=0.261  Sum_probs=32.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhC-CC-eEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVD-GL-KVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~-G~-~V~vlE~~~~   38 (342)
                      ..+|+|||+|.-|+..|..|+++ |+ +|+++|.+..
T Consensus        18 ~mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~   54 (478)
T 3g79_A           18 IKKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSK   54 (478)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChh
Confidence            35799999999999999999999 99 9999998765

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=95.38  E-value=0.015  Score=53.44  Aligned_cols=38  Identities=16%  Similarity=0.255  Sum_probs=34.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       149 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  186 (449)
T 3kd9_A          149 ENVVIIGGGYIGIEMAEAFAAQGKNVTMIVRGERVLRR  186 (449)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEEcCCccchh
Confidence            37999999999999999999999999999998876554

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=95.38  E-value=0.014  Score=50.42  Aligned_cols=35  Identities=29%  Similarity=0.224  Sum_probs=32.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -.|+|||+|.+|+-+|..|++.|.+|+++++++.+
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLANICKKVYLIHRRDGF  178 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeeCCcc
Confidence            47999999999999999999999999999998765

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=95.37  E-value=0.0092  Score=55.12  Aligned_cols=37  Identities=14%  Similarity=0.131  Sum_probs=33.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+++..
T Consensus       178 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~  214 (470)
T 1dxl_A          178 KKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEIVP  214 (470)
T ss_dssp             SEEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcccc
Confidence            3799999999999999999999999999999887654

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=95.31  E-value=0.01  Score=54.37  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=32.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      ..|.|||.|.+|+++|..|+++|++|++.|.+...-
T Consensus         6 ~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~   41 (439)
T 2x5o_A            6 KNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPP   41 (439)
T ss_dssp             CCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCT
T ss_pred             CEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcc
Confidence            369999999999999999999999999999987653

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.30  E-value=0.023  Score=51.41  Aligned_cols=38  Identities=13%  Similarity=0.262  Sum_probs=34.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCe--EEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLK--VLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~--V~vlE~~~~~GG~   42 (342)
                      .||+|||||++|++||..|+++|++  |+|+|+++..+..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~g~~~~V~li~~~~~~~y~   42 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLPYD   42 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEEECSSSSSBC
T ss_pred             CCEEEEcccHHHHHHHHHHHccCcCCeEEEEECCCCCCcC
Confidence            3899999999999999999999987  9999999887653

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=95.28  E-value=0.012  Score=53.80  Aligned_cols=37  Identities=24%  Similarity=0.262  Sum_probs=33.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+++|||||..|+-+|..|++.|.+|+++|+.+++..
T Consensus       148 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~ll~  184 (437)
T 4eqs_A          148 DKVLVVGAGYVSLEVLENLYERGLHPTLIHRSDKINK  184 (437)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSCCST
T ss_pred             cEEEEECCccchhhhHHHHHhcCCcceeeeeeccccc
Confidence            3799999999999999999999999999999887654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=95.26  E-value=0.013  Score=48.10  Aligned_cols=31  Identities=16%  Similarity=0.302  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|+|+|+|-.|...|..|.++|++|+++|++
T Consensus         2 ~iiIiG~G~~G~~la~~L~~~g~~v~vid~~   32 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLSRKYGVVIINKD   32 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence            5999999999999999999999999999985

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=95.24  E-value=0.015  Score=50.15  Aligned_cols=35  Identities=17%  Similarity=-0.049  Sum_probs=32.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       145 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          145 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEM  179 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCEEEEEEeCccc
Confidence            36999999999999999999999999999998766

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.23  E-value=0.016  Score=53.12  Aligned_cols=33  Identities=21%  Similarity=0.330  Sum_probs=30.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|.|||+|..|+..|..|+++|++|+++|++.
T Consensus         3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~   35 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDR   35 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCH
Confidence            479999999999999999999999999999864

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=95.21  E-value=0.045  Score=51.29  Aligned_cols=36  Identities=25%  Similarity=0.449  Sum_probs=33.3

Q ss_pred             CcccEEEECCCchHHHHHHhhhh------------CCCeEEEEcCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSV------------DGLKVLHMDRNDY   38 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~------------~G~~V~vlE~~~~   38 (342)
                      ..+||+|||||++|+++|..|++            +|.+|+|+|+.+.
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            36899999999999999999999            9999999999754

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=95.21  E-value=0.017  Score=50.78  Aligned_cols=35  Identities=20%  Similarity=0.311  Sum_probs=31.0

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      |+. .+|+|||+|..|...|..|+++|++|+++++.
T Consensus         1 M~~-mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~   35 (335)
T 3ghy_A            1 MSL-TRICIVGAGAVGGYLGARLALAGEAINVLARG   35 (335)
T ss_dssp             -CC-CCEEEESCCHHHHHHHHHHHHTTCCEEEECCH
T ss_pred             CCC-CEEEEECcCHHHHHHHHHHHHCCCEEEEEECh
Confidence            543 58999999999999999999999999999974

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=95.20  E-value=0.039  Score=47.72  Aligned_cols=43  Identities=14%  Similarity=0.222  Sum_probs=37.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |+.++||+|||||++|+++|+.|+++|++|+|+|+. .+||.+.
T Consensus         2 ~~~~~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~   44 (320)
T 1trb_A            2 TTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLT   44 (320)
T ss_dssp             CEEEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCS-STTGGGG
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEccC-CCCceEe
Confidence            344689999999999999999999999999999975 6777654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=95.20  E-value=0.016  Score=53.17  Aligned_cols=37  Identities=16%  Similarity=0.168  Sum_probs=33.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+.+-.
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~  186 (452)
T 2cdu_A          150 KTITIIGSGYIGAELAEAYSNQNYNVNLIDGHERVLY  186 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSTTT
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCEEEEEEcCCchhh
Confidence            3699999999999999999999999999999876544

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=95.12  E-value=0.017  Score=53.25  Aligned_cols=36  Identities=14%  Similarity=-0.021  Sum_probs=32.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+|+|||+|.+|+=+|..|++.|.+|+++++++.+-
T Consensus       198 k~VvVVG~G~sg~eiA~~l~~~g~~V~li~~~~~~~  233 (464)
T 2xve_A          198 KTVLLVGSSYSAEDIGSQCYKYGAKKLISCYRTAPM  233 (464)
T ss_dssp             SEEEEECCSTTHHHHHHHHHHTTCSEEEEECSSCCC
T ss_pred             CEEEEEcCCCCHHHHHHHHHHhCCeEEEEEECCCCC
Confidence            369999999999999999999999999999987653

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=95.12  E-value=0.018  Score=51.03  Aligned_cols=37  Identities=16%  Similarity=0.135  Sum_probs=31.6

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |.+..+|.|||.|..|...|..|+++|++|+++++..
T Consensus        19 Mm~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           19 YFQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hhcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            4344689999999999999999999999999999864

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=95.10  E-value=0.019  Score=50.19  Aligned_cols=35  Identities=26%  Similarity=0.336  Sum_probs=32.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAF  194 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHhcCCeEEEEecCCcC
Confidence            37999999999999999999999999999998765

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=95.09  E-value=0.017  Score=54.31  Aligned_cols=34  Identities=21%  Similarity=0.090  Sum_probs=31.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -+|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus       179 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          179 RRVGVIGTGSTGQQVITSLAPEVEHLTVFVRTPQ  212 (540)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTCSEEEEEESSCC
T ss_pred             ceEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            3799999999999999999999999999999765

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=95.09  E-value=0.017  Score=53.34  Aligned_cols=32  Identities=19%  Similarity=0.359  Sum_probs=30.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .+|+|||+|..|+..|..|+++|++|+++|.+
T Consensus         9 ~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~   40 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLADIGHDVFCLDVD   40 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             ceEEEECcCHHHHHHHHHHHhCCCEEEEEECC
Confidence            57999999999999999999999999999985

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=95.08  E-value=0.02  Score=49.91  Aligned_cols=35  Identities=23%  Similarity=0.192  Sum_probs=32.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       153 ~~v~VvG~G~~g~e~A~~l~~~g~~Vtlv~~~~~~  187 (325)
T 2q7v_A          153 KKVVVIGGGDAAVEEGMFLTKFADEVTVIHRRDTL  187 (325)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEeCCCcC
Confidence            36999999999999999999999999999998765

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=95.07  E-value=0.022  Score=46.34  Aligned_cols=34  Identities=15%  Similarity=0.277  Sum_probs=31.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ..|.|||+|..|.+.|..|+++|++|++++++..
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~   53 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ   53 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence            4699999999999999999999999999998754

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=95.06  E-value=0.013  Score=50.62  Aligned_cols=33  Identities=15%  Similarity=0.171  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|+|||+|.-|...|..|+++|++|++++++.
T Consensus         3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~   35 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHA   35 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHCCCeEEEEEecc
Confidence            379999999999999999999999999999863

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=95.04  E-value=0.021  Score=48.92  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=30.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      +|.|||+|..|...|..|+++|++|++++++..
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~   34 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             eEEEECcCHHHHHHHHHHHhCCCCEEEEEcCcc
Confidence            599999999999999999999999999998653

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=95.03  E-value=0.022  Score=51.38  Aligned_cols=39  Identities=18%  Similarity=0.215  Sum_probs=34.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+.+..+.
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~~~~~  181 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARAKGLEVDVVELAPRVMARV  181 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCCcchhhc
Confidence            469999999999999999999999999999988765543

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=95.02  E-value=0.02  Score=51.91  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=34.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++-.+
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~~g~~Vtvv~~~~~~l~~  190 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTKFGVNVTLLEALPRVLAR  190 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCchhhh
Confidence            46999999999999999999999999999998876554

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.97  E-value=0.019  Score=52.99  Aligned_cols=37  Identities=19%  Similarity=0.237  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhC--CCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~   37 (342)
                      |.+..+|.|||+|..|+..|..|+++  |++|++++++.
T Consensus         2 M~~~mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~   40 (467)
T 2q3e_A            2 MFEIKKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNE   40 (467)
T ss_dssp             CCCCCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred             CCCccEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence            55546899999999999999999999  89999999853

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=94.97  E-value=0.021  Score=49.97  Aligned_cols=35  Identities=23%  Similarity=0.259  Sum_probs=32.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -.|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~~g~~V~l~~~~~~~  190 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTRFARSVTLVHRRDEF  190 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHhCCeEEEEEcCCcC
Confidence            47999999999999999999999999999998765

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=94.94  E-value=0.023  Score=49.03  Aligned_cols=37  Identities=19%  Similarity=0.252  Sum_probs=31.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |+....|.|||+|..|...|..|++.|++|++++++.
T Consensus         1 M~~~~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A            1 MEKSIKIGFIGLGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             ---CCEEEEECCCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCCCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            6666789999999999999999999999999998853

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=94.92  E-value=0.019  Score=54.11  Aligned_cols=34  Identities=18%  Similarity=0.196  Sum_probs=31.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -+|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus       186 krV~VIG~G~tgve~a~~la~~~~~Vtv~~r~~~  219 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAETAKELYVFQRTPN  219 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTTBSEEEEEESSCC
T ss_pred             CeEEEECCCccHHHHHHHHHhhCCEEEEEEcCCC
Confidence            3699999999999999999999999999999865

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=94.86  E-value=0.061  Score=47.53  Aligned_cols=54  Identities=9%  Similarity=0.091  Sum_probs=41.5

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~  288 (342)
                      .+...+.+.++..|++++++++|++|..+ ++. +.|.++++++.+|+||+|+|.+
T Consensus        89 ~~~~~l~~~~~~~gv~i~~~~~v~~i~~~-~~~-~~v~~~~g~~~~d~vVlAtG~~  142 (369)
T 3d1c_A           89 TYAEYLQVVANHYELNIFENTVVTNISAD-DAY-YTIATTTETYHADYIFVATGDY  142 (369)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSS-EEEEESSCCEEEEEEEECCCST
T ss_pred             HHHHHHHHHHHHcCCeEEeCCEEEEEEEC-CCe-EEEEeCCCEEEeCEEEECCCCC
Confidence            34555666777889999999999999876 444 4466655579999999999865

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=94.86  E-value=0.026  Score=49.00  Aligned_cols=35  Identities=29%  Similarity=0.246  Sum_probs=31.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ..+|.|||.|..|...|..|+++|++|++++++..
T Consensus        21 m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~   55 (310)
T 3doj_A           21 MMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLS   55 (310)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             CCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHH
Confidence            35799999999999999999999999999998653

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=94.85  E-value=0.023  Score=53.80  Aligned_cols=36  Identities=19%  Similarity=0.170  Sum_probs=33.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      +|+|||+|..|+-+|..|++.|.+|+++|+.+.+-.
T Consensus       153 ~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~  188 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHHLGIKTTLLELADQVMT  188 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCcEEEEEcCCccch
Confidence            799999999999999999999999999999876544

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=94.83  E-value=0.023  Score=52.02  Aligned_cols=35  Identities=14%  Similarity=-0.017  Sum_probs=32.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCe-EEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~-V~vlE~~~~~   39 (342)
                      -+|+|||+|.+|+=+|..|++.|.+ |+++++.+.+
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~~~~~V~l~~r~~~~  248 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLLGGGD  248 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECTTCCS
T ss_pred             CEEEEEccCcCHHHHHHHHHHHhCCcEEEEeCCCCc
Confidence            3699999999999999999999998 9999998755

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=94.83  E-value=0.024  Score=52.42  Aligned_cols=36  Identities=28%  Similarity=0.321  Sum_probs=33.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus       188 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l  223 (478)
T 3dk9_A          188 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKVL  223 (478)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCeEEEEEeCCccc
Confidence            369999999999999999999999999999987754

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=94.81  E-value=0.026  Score=49.00  Aligned_cols=32  Identities=19%  Similarity=0.146  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|+|||+|..|...|..|+ +|++|+++.+++
T Consensus         3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~   34 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQ   34 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHh-cCCceEEEECCH
Confidence            47999999999999999999 999999999864

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=94.81  E-value=0.026  Score=50.02  Aligned_cols=32  Identities=25%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .+|.|||+|.-|.+.|..|+++|++|++++++
T Consensus        30 mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~   61 (356)
T 3k96_A           30 HPIAILGAGSWGTALALVLARKGQKVRLWSYE   61 (356)
T ss_dssp             SCEEEECCSHHHHHHHHHHHTTTCCEEEECSC
T ss_pred             CeEEEECccHHHHHHHHHHHHCCCeEEEEeCC
Confidence            58999999999999999999999999999985

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=94.79  E-value=0.025  Score=52.14  Aligned_cols=38  Identities=13%  Similarity=0.230  Sum_probs=34.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      -.|+|||+|..|+-+|..|++.|.+|+++|+.+++-..
T Consensus       173 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  210 (466)
T 3l8k_A          173 QDMVIIGAGYIGLEIASIFRLMGVQTHIIEMLDRALIT  210 (466)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCEEEEEEeCCcCCCC
Confidence            36999999999999999999999999999998876543

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=94.79  E-value=0.025  Score=49.01  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|.|||+|..|...|..|+++|++|+++++++
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~   36 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWP   36 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            479999999999999999999999999999853

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=94.79  E-value=0.026  Score=48.50  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=30.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +..|.|||+|..|...|..|+ +|++|+++|+++
T Consensus        12 ~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~   44 (293)
T 1zej_A           12 HMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSE   44 (293)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCH
T ss_pred             CCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCH
Confidence            357999999999999999999 999999999864

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=94.79  E-value=0.025  Score=52.26  Aligned_cols=34  Identities=24%  Similarity=0.305  Sum_probs=31.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ...|.|||+|.-|...|..|+++|++|+++|++.
T Consensus         5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~   38 (483)
T 3mog_A            5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISA   38 (483)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            3579999999999999999999999999999864

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=94.77  E-value=0.021  Score=51.91  Aligned_cols=34  Identities=24%  Similarity=0.251  Sum_probs=31.0

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +..|+|||.|..||.+|..|+++|++|+.+|-+.
T Consensus        21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~   54 (444)
T 3vtf_A           21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNP   54 (444)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCH
Confidence            3579999999999999999999999999998753

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=94.76  E-value=0.026  Score=51.63  Aligned_cols=34  Identities=21%  Similarity=0.326  Sum_probs=31.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ..++|||.|.-|+..|..|+++|++|++++++..
T Consensus         9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~   42 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDAR   42 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCST
T ss_pred             eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence            6799999999999999999999999999998654

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=94.75  E-value=0.026  Score=49.51  Aligned_cols=33  Identities=21%  Similarity=0.300  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      .+|+|||+|..|.+.|..|+..|+ +|+++|.+.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~   43 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   43 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCh
Confidence            579999999999999999999998 999999864

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=94.74  E-value=0.026  Score=50.58  Aligned_cols=33  Identities=18%  Similarity=0.147  Sum_probs=30.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|||+|..|+.+|..|...|.+|+++|.+.
T Consensus       191 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          191 AKIFVMGAGVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            479999999999999999999999999999875

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=94.71  E-value=0.027  Score=51.71  Aligned_cols=38  Identities=16%  Similarity=0.033  Sum_probs=34.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      -+++|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       148 ~~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~~~~l~~  185 (452)
T 3oc4_A          148 QTVAVIGAGPIGMEAIDFLVKMKKTVHVFESLENLLPK  185 (452)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSSTT
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEEEccCccccc
Confidence            36999999999999999999999999999998876543

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=94.71  E-value=0.026  Score=49.00  Aligned_cols=35  Identities=20%  Similarity=0.144  Sum_probs=32.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       156 ~~v~viG~G~~g~e~a~~l~~~g~~V~~i~~~~~~  190 (319)
T 3cty_A          156 KRVVTIGGGNSGAIAAISMSEYVKNVTIIEYMPKY  190 (319)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTBSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCcEEEEEcCCcc
Confidence            36999999999999999999999999999997655

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=94.64  E-value=0.021  Score=53.91  Aligned_cols=34  Identities=18%  Similarity=0.200  Sum_probs=31.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -.|+|||+|.+|+-+|..|++.|.+|+|+++.+.
T Consensus       192 krV~VIG~G~sgve~a~~l~~~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          192 KRVGVIGTGSSGIQSIPIIAEQAEQLFVFQRSAN  225 (549)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CEEEEECCCchHHHHHHHHHhhCCEEEEEECCCC
Confidence            3699999999999999999999999999999765

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=94.64  E-value=0.02  Score=52.65  Aligned_cols=34  Identities=21%  Similarity=0.336  Sum_probs=31.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..+|+|+|+|-.|...|..|+..|++|+|+|+++
T Consensus         3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~   36 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDG   36 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCH
T ss_pred             cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            3579999999999999999999999999999963

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=94.62  E-value=0.03  Score=49.17  Aligned_cols=33  Identities=27%  Similarity=0.442  Sum_probs=30.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +.+|.|||+|.-|...|..|+++|++|+++++.
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~   46 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARR   46 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCC
Confidence            358999999999999999999999999999885

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=94.60  E-value=0.034  Score=48.70  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHH-HHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~-aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ..|.|||.|-+|++ +|..|.++|++|.+.|++..
T Consensus         5 ~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~   39 (326)
T 3eag_A            5 KHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMY   39 (326)
T ss_dssp             CEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred             cEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence            46999999999997 78889999999999999754

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=94.53  E-value=0.031  Score=48.67  Aligned_cols=35  Identities=29%  Similarity=0.395  Sum_probs=32.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -.|+|||+|.+|+-+|..|++.|.+|+++++.+.+
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~~g~~v~~v~~~~~~  208 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTKYGSKVFMLVRKDHL  208 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCEEEEEEcCCcc
Confidence            46999999999999999999999999999997654

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=94.50  E-value=0.03  Score=51.20  Aligned_cols=34  Identities=18%  Similarity=0.328  Sum_probs=31.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ..|.|||+|.-|...|..|+++|++|+++|.++.
T Consensus        55 ~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e   88 (460)
T 3k6j_A           55 NSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ   88 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence            4699999999999999999999999999999765

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.43  E-value=0.033  Score=50.92  Aligned_cols=32  Identities=25%  Similarity=0.482  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|+|||+|..|+..|..|+++|++|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~   33 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVSS   33 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999999853

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=94.42  E-value=0.031  Score=48.20  Aligned_cols=35  Identities=23%  Similarity=0.376  Sum_probs=29.0

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |++  +|.+||-|.-|...|..|.++|++|++++++.
T Consensus         4 Ms~--kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~   38 (297)
T 4gbj_A            4 MSE--KIAFLGLGNLGTPIAEILLEAGYELVVWNRTA   38 (297)
T ss_dssp             CCC--EEEEECCSTTHHHHHHHHHHTTCEEEEC----
T ss_pred             CCC--cEEEEecHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            554  69999999999999999999999999999764

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=94.41  E-value=0.025  Score=50.38  Aligned_cols=31  Identities=26%  Similarity=0.260  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|.|||+|..|...|..|+++|++|++++++
T Consensus        17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~   47 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMN   47 (366)
T ss_dssp             EEEEECCSHHHHHHHHHHTTTEEEEEEECSC
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCEEEEEECC
Confidence            7999999999999999999999999999885

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=94.41  E-value=0.037  Score=45.41  Aligned_cols=32  Identities=16%  Similarity=0.140  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|+|||||-.|...|..|.+.|.+|+|++..
T Consensus        32 k~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~   63 (223)
T 3dfz_A           32 RSVLVVGGGTIATRRIKGFLQEGAAITVVAPT   63 (223)
T ss_dssp             CCEEEECCSHHHHHHHHHHGGGCCCEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            57999999999999999999999999999874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=94.37  E-value=0.028  Score=42.61  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=29.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|+|||+|..|...|..|++.|.+|+++++.
T Consensus        22 ~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~   53 (144)
T 3oj0_A           22 NKILLVGNGMLASEIAPYFSYPQYKVTVAGRN   53 (144)
T ss_dssp             CEEEEECCSHHHHHHGGGCCTTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence            36999999999999999999999999999885

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=94.35  E-value=0.025  Score=51.99  Aligned_cols=34  Identities=12%  Similarity=0.067  Sum_probs=31.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~   38 (342)
                      -+|+|||||.+|+-+|..|++.  |.+|+++++++.
T Consensus       228 ~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~  263 (463)
T 3s5w_A          228 MKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASA  263 (463)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSS
T ss_pred             CeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCC
Confidence            4799999999999999999999  899999999754

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=94.34  E-value=0.031  Score=53.32  Aligned_cols=31  Identities=26%  Similarity=0.316  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|+|||||.+|+-+|..|++.|.+|+++|+.
T Consensus       288 ~vvViGgG~~g~E~A~~l~~~g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLASLGGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            6999999999999999999999999999986

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=94.34  E-value=0.041  Score=47.80  Aligned_cols=33  Identities=27%  Similarity=0.348  Sum_probs=30.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ..+|+|||+|..|.+.|+.|+.+|+ +|+++|..
T Consensus         8 ~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~   41 (315)
T 3tl2_A            8 RKKVSVIGAGFTGATTAFLLAQKELADVVLVDIP   41 (315)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCG
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence            3589999999999999999999999 99999986

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=94.33  E-value=0.036  Score=48.22  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      .+|+|||+|..|...|..|+++|+  +|+++|++.
T Consensus         8 mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~   42 (319)
T 1lld_A            8 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAK   42 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            479999999999999999999998  999999863

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=94.31  E-value=0.034  Score=51.21  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|+++|++|+++|++.
T Consensus        38 ~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~   70 (463)
T 1zcj_A           38 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP   70 (463)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999864

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=94.24  E-value=0.085  Score=48.66  Aligned_cols=41  Identities=24%  Similarity=0.370  Sum_probs=36.8

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      ++|||+|||||.+|++||++|+++|++|+|+|+++.+||..
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~gG~~   42 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKT   42 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCEEEEEeCCCccCCCC
Confidence            46999999999999999999999999999999998655544

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=94.23  E-value=0.044  Score=47.61  Aligned_cols=33  Identities=24%  Similarity=0.182  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|++.|++|++++++.
T Consensus        31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=94.22  E-value=0.039  Score=52.48  Aligned_cols=38  Identities=16%  Similarity=0.171  Sum_probs=34.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      -+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus       188 ~~vvViGgG~~g~e~A~~l~~~g~~Vtlv~~~~~~l~~  225 (588)
T 3ics_A          188 RHATVIGGGFIGVEMVENLRERGIEVTLVEMANQVMPP  225 (588)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTT
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEecCCccccc
Confidence            36999999999999999999999999999998766543

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=94.22  E-value=0.029  Score=49.87  Aligned_cols=33  Identities=21%  Similarity=0.162  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|||+|..|+.+|..|...|.+|+++|++.
T Consensus       185 ~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          185 ASALVLGVGVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999863

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=94.21  E-value=0.077  Score=46.83  Aligned_cols=58  Identities=17%  Similarity=0.179  Sum_probs=46.0

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CC--cEEEcCEEEECCCCCCc
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EG--ETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~---~g--~~~~a~~vI~~~~~~~~  290 (342)
                      ..+...|.+..++.|++++++++|++|..+ ++++..|+.   +|  .++.+|.||+|+|+.|+
T Consensus       202 ~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~  264 (360)
T 3ab1_A          202 GKTAHEVERARANGTIDVYLETEVASIEES-NGVLTRVHLRSSDGSKWTVEADRLLILIGFKSN  264 (360)
T ss_dssp             SHHHHSSHHHHHHTSEEEESSEEEEEEEEE-TTEEEEEEEEETTCCEEEEECSEEEECCCBCCS
T ss_pred             HHHHHHHHHHhhcCceEEEcCcCHHHhccC-CCceEEEEEEecCCCeEEEeCCEEEECCCCCCC
Confidence            356667777778889999999999999876 566555554   56  57999999999998875

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=94.20  E-value=0.027  Score=48.85  Aligned_cols=35  Identities=26%  Similarity=0.470  Sum_probs=29.7

Q ss_pred             CCCc-ccEEEECCCchHHHHHHhhhhC-----C-CeEEEEcC
Q 019351            1 MDEE-YDVIVLGTGLKECILSGLLSVD-----G-LKVLHMDR   35 (342)
Q Consensus         1 m~~~-~DViIiG~GiaGl~aA~~L~~~-----G-~~V~vlE~   35 (342)
                      |+++ .+|.|||+|..|...|..|+++     | ++|+++++
T Consensus         4 m~~~~m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r   45 (317)
T 2qyt_A            4 MNQQPIKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR   45 (317)
T ss_dssp             ---CCEEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc
Confidence            4443 4799999999999999999999     9 99999987

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=94.17  E-value=0.047  Score=47.60  Aligned_cols=34  Identities=12%  Similarity=0.213  Sum_probs=30.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      ..+|+|||+|..|.++|+.|+..|.  +|.++|.+.
T Consensus         7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~   42 (318)
T 1y6j_A            7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   42 (318)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            4689999999999999999999997  899999864

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=94.15  E-value=0.051  Score=47.05  Aligned_cols=33  Identities=30%  Similarity=0.493  Sum_probs=30.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|.|||.|..|...|..|+++|++|++++++.
T Consensus        10 ~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A           10 FDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999999864

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=94.13  E-value=0.037  Score=47.44  Aligned_cols=33  Identities=24%  Similarity=0.249  Sum_probs=30.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      +|.|||.|..|...|..|+++|++|++++++..
T Consensus         3 ~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pdu_A            3 TYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPA   35 (287)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHTCCEEEECSSGG
T ss_pred             eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999998753

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=94.13  E-value=0.043  Score=47.83  Aligned_cols=32  Identities=25%  Similarity=0.563  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|+|||+|.-|...|..|+++|++|+++ +++
T Consensus        20 ~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~   51 (318)
T 3hwr_A           20 MKVAIMGAGAVGCYYGGMLARAGHEVILI-ARP   51 (318)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCH
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcH
Confidence            57999999999999999999999999999 653

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=94.13  E-value=0.043  Score=49.81  Aligned_cols=32  Identities=19%  Similarity=0.232  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|+|||+|..|+..|..|++ |++|+++|.+.
T Consensus        37 mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~   68 (432)
T 3pid_A           37 MKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQ   68 (432)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TSEEEEECSCH
T ss_pred             CEEEEECcCHHHHHHHHHHHc-CCeEEEEecCH
Confidence            579999999999999999998 99999999864

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=94.12  E-value=0.032  Score=52.26  Aligned_cols=36  Identities=17%  Similarity=-0.057  Sum_probs=32.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+|+|||+|.+|+-+|..|++.|.+|+++++.+.+.
T Consensus       356 k~V~ViGgG~~g~E~A~~L~~~g~~Vtlv~~~~~l~  391 (521)
T 1hyu_A          356 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMK  391 (521)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHBSEEEEECSSSSCC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCEEEEEEeCcccC
Confidence            379999999999999999999999999999987654

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=94.11  E-value=0.044  Score=47.43  Aligned_cols=32  Identities=28%  Similarity=0.424  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      +|+|||+|..|.+.|+.|+.+|+  +|.++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~   35 (304)
T 2v6b_A            2 KVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDE   35 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence            69999999999999999999998  999999863

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=94.09  E-value=0.047  Score=47.21  Aligned_cols=33  Identities=21%  Similarity=0.163  Sum_probs=30.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|.|||.|..|...|..|+++|++|++++++.
T Consensus         8 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A            8 FHVGIVGLGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            579999999999999999999999999999864

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=94.08  E-value=0.028  Score=47.64  Aligned_cols=33  Identities=15%  Similarity=0.098  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|+|||||-.|...|..|.+.|.+|+|++...
T Consensus        14 k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~   46 (274)
T 1kyq_A           14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL   46 (274)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence            579999999999999999999999999998754

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=94.06  E-value=0.049  Score=45.46  Aligned_cols=33  Identities=30%  Similarity=0.356  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|+++|++|++++++.
T Consensus        20 ~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           20 MKIAVLGTGTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            579999999999999999999999999998863

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=94.02  E-value=0.023  Score=46.67  Aligned_cols=32  Identities=13%  Similarity=0.229  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEE-EcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLH-MDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~v-lE~~   36 (342)
                      ..|.|||+|..|...|..|+++|++|++ ++++
T Consensus        24 mkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~   56 (220)
T 4huj_A           24 TTYAIIGAGAIGSALAERFTAAQIPAIIANSRG   56 (220)
T ss_dssp             CCEEEEECHHHHHHHHHHHHHTTCCEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            5799999999999999999999999998 7775

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=94.00  E-value=0.044  Score=47.84  Aligned_cols=34  Identities=18%  Similarity=0.238  Sum_probs=31.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC----CeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG----LKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G----~~V~vlE~~~   37 (342)
                      ...|.|||+|..|...|..|+++|    ++|++++++.
T Consensus        22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~   59 (322)
T 2izz_A           22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDM   59 (322)
T ss_dssp             CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCc
Confidence            457999999999999999999999    8999999865

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=93.99  E-value=0.048  Score=47.72  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      .+|+|||+|..|...|..|+.+|+ +|+++|.+.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~   48 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIE   48 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSST
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCH
Confidence            479999999999999999999998 999999864

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=93.97  E-value=0.046  Score=46.82  Aligned_cols=33  Identities=18%  Similarity=0.205  Sum_probs=30.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      .|.|||.|..|...|..|+++|++|++++++..
T Consensus         3 ~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~   35 (287)
T 3pef_A            3 KFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPE   35 (287)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSGG
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHH
Confidence            699999999999999999999999999998653

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=93.80  E-value=0.048  Score=48.44  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=31.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      +..|+|+|||.+|..+|..|...|. +|+++|++.
T Consensus       188 d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~G  222 (398)
T 2a9f_A          188 EVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFG  222 (398)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             ccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            4689999999999999999999997 999999984

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=93.79  E-value=0.061  Score=46.90  Aligned_cols=33  Identities=21%  Similarity=0.257  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||.|..|...|..|+++|++|++++++.
T Consensus        32 ~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           32 RKITFLGTGSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             SEEEEECCTTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            479999999999999999999999999999864

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=93.79  E-value=0.13  Score=44.77  Aligned_cols=54  Identities=19%  Similarity=0.265  Sum_probs=42.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSY  287 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~  287 (342)
                      ..+...+.+.++..|++++++++|++|+.+ ++. +.|++ ++.++.+|+||+|+|.
T Consensus        65 ~~~~~~l~~~~~~~~~~~~~~~~v~~i~~~-~~~-~~v~~~~g~~~~~~~lv~AtG~  119 (335)
T 2zbw_A           65 KDLVKGLVEQVAPFNPVYSLGERAETLERE-GDL-FKVTTSQGNAYTAKAVIIAAGV  119 (335)
T ss_dssp             HHHHHHHHHHHGGGCCEEEESCCEEEEEEE-TTE-EEEEETTSCEEEEEEEEECCTT
T ss_pred             HHHHHHHHHHHHHcCCEEEeCCEEEEEEEC-CCE-EEEEECCCCEEEeCEEEECCCC
Confidence            355666777777889999999999999876 443 44555 5668999999999987

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=93.79  E-value=0.059  Score=49.97  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -+++|||+|..|+-+|..|++.|.+|+++++..
T Consensus       186 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~  218 (488)
T 3dgz_A          186 GKTLVVGASYVALECAGFLTGIGLDTTVMMRSI  218 (488)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCceEEEEcCc
Confidence            369999999999999999999999999999864

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=93.77  E-value=0.059  Score=50.42  Aligned_cols=31  Identities=29%  Similarity=0.373  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +++|||+|..|+-+|..|++.|.+|+++++.
T Consensus       212 ~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~  242 (519)
T 3qfa_A          212 KTLVVGASYVALECAGFLAGIGLDVTVMVRS  242 (519)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             eEEEECCcHHHHHHHHHHHHcCCeEEEEecc
Confidence            5999999999999999999999999999984

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=93.75  E-value=0.05  Score=49.12  Aligned_cols=31  Identities=29%  Similarity=0.263  Sum_probs=28.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|.|||+|..|+..|..|++ |++|++++++.
T Consensus         2 kI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~   32 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLSL-QNEVTIVDILP   32 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHhC-CCEEEEEECCH
Confidence            59999999999999999999 99999999853

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=93.75  E-value=0.056  Score=46.25  Aligned_cols=33  Identities=12%  Similarity=0.178  Sum_probs=30.4

Q ss_pred             ccEEEECC-CchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+ |..|...|..|+++|++|++++++.
T Consensus        12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            37999999 9999999999999999999999853

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=93.72  E-value=0.056  Score=46.48  Aligned_cols=35  Identities=26%  Similarity=0.220  Sum_probs=32.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -.|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus       148 ~~v~viG~g~~~~e~a~~l~~~g~~v~~~~~~~~~  182 (315)
T 3r9u_A          148 KEVAVLGGGDTALEEALYLANICSKIYLIHRRDEF  182 (315)
T ss_dssp             SEEEEECCBHHHHHHHHHHHTTSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhhCCEEEEEEeCCCC
Confidence            36999999999999999999999999999998765

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=93.69  E-value=0.057  Score=49.94  Aligned_cols=33  Identities=18%  Similarity=0.203  Sum_probs=30.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +.+|.|||+|.-|...|..|+++|++|+++++.
T Consensus        15 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~   47 (480)
T 2zyd_A           15 KQQIGVVGMAVMGRNLALNIESRGYTVSIFNRS   47 (480)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSS
T ss_pred             CCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCC
Confidence            358999999999999999999999999999885

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=93.69  E-value=0.057  Score=49.63  Aligned_cols=35  Identities=26%  Similarity=0.174  Sum_probs=31.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~~   39 (342)
                      -+|+|||||.+|+-+|..|.+.|. +|+++++++..
T Consensus       265 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtiv~r~~~~  300 (456)
T 2vdc_G          265 KHVVVLGGGDTAMDCVRTAIRQGATSVKCLYRRDRK  300 (456)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCST
T ss_pred             CEEEEECCChhHHHHHHHHHHcCCCEEEEEEeCCcc
Confidence            369999999999999999999997 69999998764

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=93.68  E-value=0.065  Score=46.45  Aligned_cols=33  Identities=15%  Similarity=0.346  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      .+|+|||+|..|...|+.|+..|+ +|.++|.+.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~   36 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   36 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCc
Confidence            379999999999999999999996 999999753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=93.68  E-value=0.049  Score=50.24  Aligned_cols=37  Identities=14%  Similarity=0.155  Sum_probs=33.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhC-CCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVD-GLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~-G~~V~vlE~~~~~GG   41 (342)
                      -+++|||+|.+|+-+|..|++. |.+|+++|+.+.+..
T Consensus       160 ~~vvViGgG~~g~e~A~~l~~~~g~~Vtlv~~~~~~l~  197 (472)
T 3iwa_A          160 SKAVIVGGGFIGLEMAVSLADMWGIDTTVVELADQIMP  197 (472)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHCCEEEEECSSSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHhcCCcEEEEEccCcccc
Confidence            4799999999999999999999 999999999876544

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=93.67  E-value=0.046  Score=47.82  Aligned_cols=30  Identities=30%  Similarity=0.226  Sum_probs=28.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~   35 (342)
                      .|.|||+|..|...|..|+++|++|+++++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r   31 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCeEEEEEc
Confidence            599999999999999999999999999998

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=93.67  E-value=0.052  Score=47.28  Aligned_cols=33  Identities=15%  Similarity=0.139  Sum_probs=30.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~   37 (342)
                      ..|.|||.|..|...|..|+++| ++|++++++.
T Consensus        25 m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           25 TTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             CeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            46999999999999999999999 9999999874

>4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A*

Probab=93.60  E-value=0.062  Score=47.68  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=30.4

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      .|+|+|||..|..+|+.+.+.|++|+++|.++.
T Consensus         3 ~I~ilGgg~~g~~~~~~Ak~~G~~vv~vd~~~~   35 (363)
T 4ffl_A            3 TICLVGGKLQGFEAAYLSKKAGMKVVLVDKNPQ   35 (363)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence            499999999999999999999999999998654

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=93.60  E-value=0.068  Score=45.48  Aligned_cols=33  Identities=9%  Similarity=-0.063  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -.|+|||+|.+|+-+|..|++.| +|+++++.+.
T Consensus       142 ~~v~vvG~G~~~~e~a~~l~~~g-~v~~v~~~~~  174 (297)
T 3fbs_A          142 GKIGVIAASPMAIHHALMLPDWG-ETTFFTNGIV  174 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHGGGTS-EEEEECTTTC
T ss_pred             CEEEEEecCccHHHHHHHhhhcC-cEEEEECCCC
Confidence            46999999999999999999999 9999998765

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=93.58  E-value=0.067  Score=43.68  Aligned_cols=32  Identities=34%  Similarity=0.307  Sum_probs=29.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|.|||+|..|...|..|++.|++|.+++++
T Consensus        29 ~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~   60 (215)
T 2vns_A           29 PKVGILGSGDFARSLATRLVGSGFKVVVGSRN   60 (215)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            47999999999999999999999999999875

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=93.56  E-value=0.063  Score=48.56  Aligned_cols=33  Identities=30%  Similarity=0.417  Sum_probs=31.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|+|||.|-.|...|..|.+.|++|+|+|.++
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~   37 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDP   37 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEECCH
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            469999999999999999999999999999864

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=93.55  E-value=0.065  Score=46.48  Aligned_cols=32  Identities=16%  Similarity=0.217  Sum_probs=29.4

Q ss_pred             cEEEECCCchHHHHHHhhhhC--CCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVD--GLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~   37 (342)
                      +|+|||+|..|.+.|..|+++  |++|+++|.+.
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~   35 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCh
Confidence            699999999999999999985  78999999864

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=93.52  E-value=0.065  Score=49.59  Aligned_cols=36  Identities=17%  Similarity=0.308  Sum_probs=33.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+++|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus       192 ~~v~ViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l  227 (484)
T 3o0h_A          192 KSIVIVGGGYIGVEFANIFHGLGVKTTLLHRGDLIL  227 (484)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEECCCccc
Confidence            479999999999999999999999999999987654

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=93.42  E-value=0.08  Score=46.17  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=30.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      .+|+|||+|..|.+.|+.|+..|+ +|.++|...
T Consensus         8 ~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~   41 (324)
T 3gvi_A            8 NKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAE   41 (324)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            589999999999999999999998 999999865

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=93.42  E-value=0.061  Score=48.46  Aligned_cols=33  Identities=24%  Similarity=0.294  Sum_probs=30.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|+|+|..|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            469999999999999999999999999999864

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=93.41  E-value=0.073  Score=46.13  Aligned_cols=36  Identities=22%  Similarity=0.212  Sum_probs=32.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -.|+|||+|.+|+-+|..|++.|.+|+++++.+.+.
T Consensus       155 ~~v~vvG~g~~~~e~a~~l~~~~~~v~~~~~~~~~~  190 (332)
T 3lzw_A          155 RRVAILGGGDSAVDWALMLEPIAKEVSIIHRRDKFR  190 (332)
T ss_dssp             CEEEEECSSHHHHHHHHHHTTTBSEEEEECSSSSCS
T ss_pred             CEEEEECCCHhHHHHHHHHHhhCCeEEEEEecCcCC
Confidence            369999999999999999999999999999987763

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=93.39  E-value=0.058  Score=46.98  Aligned_cols=36  Identities=17%  Similarity=0.298  Sum_probs=32.1

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      |.+..+|+|||+|..|.+.|+.|+..+.  ++.++|.+
T Consensus         2 ~~~~~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~   39 (318)
T 1ez4_A            2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV   39 (318)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            5566799999999999999999999886  89999974

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=93.36  E-value=0.057  Score=46.89  Aligned_cols=32  Identities=16%  Similarity=0.196  Sum_probs=30.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ..|.|||.|..|...|..|+++|+ +|++++++
T Consensus        25 ~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           25 MKLGFIGFGEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            579999999999999999999999 99999996

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=93.35  E-value=0.075  Score=43.08  Aligned_cols=31  Identities=29%  Similarity=0.228  Sum_probs=29.1

Q ss_pred             cEEEEC-CCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG-~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .|+||| +|..|...|..|+++|++|.+++++
T Consensus         2 ~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~   33 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             eEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            589999 9999999999999999999999875

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=93.32  E-value=0.074  Score=46.43  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=30.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      ..+|+|||+|..|.++|+.|+..|.  +|+++|.+
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~   39 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVN   39 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecc
Confidence            4689999999999999999999996  89999985

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=93.28  E-value=0.17  Score=48.30  Aligned_cols=55  Identities=15%  Similarity=0.143  Sum_probs=43.8

Q ss_pred             hHHHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      .+...|.+.+++. |++|+ +..|+.|..+ ++++.+|.+ +|.++.||.||+|+|.++
T Consensus       118 ~l~~~L~~~l~~~~GV~I~-~~~V~~L~~d-~g~V~GV~t~~G~~i~Ad~VVLATG~~s  174 (641)
T 3cp8_A          118 QYSLYMRRIVEHEPNIDLL-QDTVIGVSAN-SGKFSSVTVRSGRAIQAKAAILACGTFL  174 (641)
T ss_dssp             HHHHHHHHHHHTCTTEEEE-ECCEEEEEEE-TTEEEEEEETTSCEEEEEEEEECCTTCB
T ss_pred             HHHHHHHHHHHhCCCCEEE-eeEEEEEEec-CCEEEEEEECCCcEEEeCEEEECcCCCC
Confidence            5677777777774 99996 5589999876 677777777 677999999999998763

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=93.25  E-value=0.12  Score=47.67  Aligned_cols=43  Identities=26%  Similarity=0.374  Sum_probs=36.8

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC---------CCCCcCcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND---------YYGGESSS   45 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~---------~~GG~~~t   45 (342)
                      .+|||+|||||.+|++||.+|+++|++|+|+|++.         .+||.|..
T Consensus         8 ~~~DvvVIGgG~aGl~aA~~la~~G~~V~liEk~~~~~~~~~~~~~GG~c~~   59 (483)
T 3dgh_A            8 YDYDLIVIGGGSAGLACAKEAVLNGARVACLDFVKPTPTLGTKWGVGGTCVN   59 (483)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHTTCCEEEECCCCCCTTTTCCCCSSCHHHH
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCEEEEEEeccccccccccCCcCCeecc
Confidence            36999999999999999999999999999999521         37887753

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=93.25  E-value=0.038  Score=45.57  Aligned_cols=33  Identities=15%  Similarity=0.122  Sum_probs=30.5

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..+|.|||+|..|.+.|..|+++|++|+++++.
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~   38 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP   38 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG
T ss_pred             CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH
Confidence            357999999999999999999999999999884

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=93.21  E-value=0.08  Score=45.61  Aligned_cols=32  Identities=22%  Similarity=0.499  Sum_probs=30.1

Q ss_pred             cEEEEC-CCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG-~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|.||| +|..|.+.|..|+++|++|++++++.
T Consensus        23 ~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A           23 KIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             CEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             EEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            699999 99999999999999999999999865

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=93.16  E-value=0.086  Score=48.92  Aligned_cols=33  Identities=18%  Similarity=0.133  Sum_probs=30.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||.|.-|...|..|+++|++|+++++..
T Consensus        11 ~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~   43 (497)
T 2p4q_A           11 ADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQ   43 (497)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred             CCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            579999999999999999999999999998854

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=93.16  E-value=0.044  Score=45.30  Aligned_cols=33  Identities=9%  Similarity=0.031  Sum_probs=29.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .-.|+|+|+|-.|...|..|.+.|+ |+++|+++
T Consensus         9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~   41 (234)
T 2aef_A            9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDEN   41 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGG
T ss_pred             CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCH
Confidence            3479999999999999999999999 99999863

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=93.14  E-value=0.079  Score=47.46  Aligned_cols=33  Identities=21%  Similarity=0.202  Sum_probs=30.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|+|+|..|+.+|..|...|.+|+++|++.
T Consensus       173 ~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          173 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999864

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.14  E-value=0.068  Score=43.68  Aligned_cols=37  Identities=19%  Similarity=0.333  Sum_probs=31.4

Q ss_pred             CCCcccEEEECC-CchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |+.+..|+|.|| |..|...+..|.++|++|+++.++.
T Consensus         1 M~~m~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~   38 (227)
T 3dhn_A            1 MEKVKKIVLIGASGFVGSALLNEALNRGFEVTAVVRHP   38 (227)
T ss_dssp             --CCCEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCG
T ss_pred             CCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCc
Confidence            655568999995 9999999999999999999998864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=93.13  E-value=0.085  Score=45.31  Aligned_cols=33  Identities=27%  Similarity=0.299  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|++.|++|.+++++.
T Consensus         6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            379999999999999999999999999998853

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=93.11  E-value=0.078  Score=49.31  Aligned_cols=58  Identities=5%  Similarity=-0.036  Sum_probs=44.2

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcC-CCcEEEEEe----CC--cEEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTS----EG--ETAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~~v~~----~g--~~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.+++.|++|+++++|++|..++ ++..+.|++    +|  .++.||.||.|+|..+
T Consensus       166 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S  230 (497)
T 2bry_A          166 RQLQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKF  230 (497)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCc
Confidence            4677788888888999999999999998641 233345554    34  4799999999998764

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=93.10  E-value=0.14  Score=43.99  Aligned_cols=54  Identities=15%  Similarity=0.127  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~  288 (342)
                      ..+...+.+.++..|+++++ ++|++|..+ ++. +.+++ ++.++.+|+||+|+|..
T Consensus        70 ~~~~~~~~~~~~~~~v~~~~-~~v~~i~~~-~~~-~~v~~~~g~~~~~d~lvlAtG~~  124 (323)
T 3f8d_A           70 SDMIKVFNKHIEKYEVPVLL-DIVEKIENR-GDE-FVVKTKRKGEFKADSVILGIGVK  124 (323)
T ss_dssp             HHHHHHHHHHHHTTTCCEEE-SCEEEEEEC---C-EEEEESSSCEEEEEEEEECCCCE
T ss_pred             HHHHHHHHHHHHHcCCEEEE-EEEEEEEec-CCE-EEEEECCCCEEEcCEEEECcCCC
Confidence            35666777888888999999 999999876 554 44555 66899999999999864

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=93.10  E-value=0.1  Score=45.48  Aligned_cols=33  Identities=21%  Similarity=0.296  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      .+|+|||+|..|.+.|+.|+..|. +|.++|...
T Consensus         6 ~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~   39 (321)
T 3p7m_A            6 KKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQ   39 (321)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCh
Confidence            589999999999999999999998 999999865

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=93.09  E-value=0.08  Score=48.06  Aligned_cols=33  Identities=27%  Similarity=0.349  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+..|||.|.-|+.+|..|+++|++|+++|.+.
T Consensus        12 ~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~   44 (431)
T 3ojo_A           12 SKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQ   44 (431)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CccEEEeeCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            468899999999999999999999999999864

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=93.08  E-value=0.072  Score=44.62  Aligned_cols=32  Identities=25%  Similarity=0.442  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ..|+|||+|-.|..+|..|++.|. +++|+|..
T Consensus        32 ~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d   64 (249)
T 1jw9_B           32 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   64 (249)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence            479999999999999999999996 89999985

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=93.06  E-value=0.073  Score=44.75  Aligned_cols=37  Identities=11%  Similarity=0.131  Sum_probs=32.3

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCC----CeEEEEcCCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDG----LKVLHMDRNDY   38 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G----~~V~vlE~~~~   38 (342)
                      |. ...|.|||+|.-|...|..|+++|    ++|.+++++..
T Consensus         2 m~-~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~   42 (262)
T 2rcy_A            2 ME-NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKK   42 (262)
T ss_dssp             CS-SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCC
T ss_pred             CC-CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCcc
Confidence            54 357999999999999999999999    79999998754

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.01  E-value=0.071  Score=49.31  Aligned_cols=32  Identities=19%  Similarity=0.294  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhC--CCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~   36 (342)
                      .+|.|||+|..|+..|..|+++  |++|+++|++
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~   43 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMN   43 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            4799999999999999999998  7999999974

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=93.00  E-value=0.077  Score=47.06  Aligned_cols=33  Identities=30%  Similarity=0.404  Sum_probs=30.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      +..|+|+|+|.+|..+|..|...|. +|+++|+.
T Consensus       192 ~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~  225 (388)
T 1vl6_A          192 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRK  225 (388)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETT
T ss_pred             CcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECC
Confidence            4689999999999999999999997 89999997

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=93.00  E-value=0.093  Score=48.40  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=31.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +.+|.|||.|..|...|..|+++|++|++++++.
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~   37 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   37 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            3589999999999999999999999999999865

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=92.98  E-value=0.071  Score=46.45  Aligned_cols=31  Identities=16%  Similarity=0.277  Sum_probs=29.4

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      +|+|||+|..|.+.|..|+++|+  +|+++|.+
T Consensus         2 kI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~   34 (319)
T 1a5z_A            2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            69999999999999999999998  99999986

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=92.95  E-value=0.084  Score=46.85  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -.|+|+|+|..|+.+|..|+..|.+|++++++
T Consensus       168 ~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~  199 (361)
T 1pjc_A          168 GKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN  199 (361)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCC
Confidence            46999999999999999999999999999986

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=92.86  E-value=0.055  Score=47.80  Aligned_cols=34  Identities=12%  Similarity=0.143  Sum_probs=31.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC-------CeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G-------~~V~vlE~~~~   38 (342)
                      ..|.|||+|.-|...|..|+++|       ++|++++++..
T Consensus         9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~   49 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEED   49 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChh
Confidence            47999999999999999999999       99999998765

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=92.79  E-value=0.087  Score=48.44  Aligned_cols=34  Identities=18%  Similarity=0.212  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHHhhh--------------------hCCC-eEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLS--------------------VDGL-KVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~--------------------~~G~-~V~vlE~~~~   38 (342)
                      -.|+|||+|..|+-+|..|+                    +.|. +|+|+++++.
T Consensus       146 ~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~  200 (460)
T 1cjc_A          146 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP  200 (460)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred             CEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence            37999999999999999999                    5786 7999998743

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=92.77  E-value=0.1  Score=48.14  Aligned_cols=35  Identities=20%  Similarity=0.186  Sum_probs=31.6

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      |+ +.+|.|||+|..|...|..|+++|++|+++++.
T Consensus         3 m~-~~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~   37 (474)
T 2iz1_A            3 MA-QANFGVVGMAVMGKNLALNVESRGYTVAIYNRT   37 (474)
T ss_dssp             CT-TBSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CC-CCcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCC
Confidence            54 358999999999999999999999999999885

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=92.76  E-value=0.12  Score=43.19  Aligned_cols=33  Identities=15%  Similarity=0.232  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC----eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL----KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~----~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|.++|+    +|.++++++
T Consensus         3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~   39 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNT   39 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCH
T ss_pred             CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCH
Confidence            379999999999999999999998    999999863

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=92.75  E-value=0.084  Score=51.42  Aligned_cols=33  Identities=21%  Similarity=0.329  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|.-|...|..|+++|++|+++|++.
T Consensus       313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  345 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNE  345 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSH
T ss_pred             cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999864

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=92.72  E-value=0.11  Score=44.61  Aligned_cols=32  Identities=19%  Similarity=0.123  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|.|||+|..|...|..|+++|++|++++++.
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~   33 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFP   33 (296)
T ss_dssp             CEEEECCSTTHHHHHHHHHHTTCCEEEECSST
T ss_pred             eEEEEeccHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            59999999999999999999999999999864

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=92.72  E-value=0.1  Score=44.27  Aligned_cols=32  Identities=28%  Similarity=0.412  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|.|||+|..|...|..|++.|++|++++++.
T Consensus         2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~   33 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQ   33 (279)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence            59999999999999999999999999998853

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=92.66  E-value=0.073  Score=48.01  Aligned_cols=30  Identities=37%  Similarity=0.464  Sum_probs=28.0

Q ss_pred             ccEEEECCCchHHHHHHhhhh-CCCeEEEEc
Q 019351            5 YDVIVLGTGLKECILSGLLSV-DGLKVLHMD   34 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~-~G~~V~vlE   34 (342)
                      .+|+|||+|..|...|..|++ +|++|++++
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~   33 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLT   33 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEe
Confidence            379999999999999999998 599999998

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=92.60  E-value=0.099  Score=45.47  Aligned_cols=33  Identities=15%  Similarity=0.266  Sum_probs=29.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      ..+|+|||+|..|.++|+.|+..|.  +|.++|.+
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~   40 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLD   40 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            3689999999999999999999884  89999975

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=92.60  E-value=0.074  Score=47.47  Aligned_cols=33  Identities=18%  Similarity=0.355  Sum_probs=30.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCC-------CeEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG-------LKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G-------~~V~vlE~~~~   38 (342)
                      .|.|||+|.-|...|..|+++|       ++|++++++..
T Consensus        23 kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~   62 (375)
T 1yj8_A           23 KISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEF   62 (375)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChh
Confidence            6999999999999999999999       99999998654

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=92.59  E-value=0.11  Score=44.18  Aligned_cols=33  Identities=24%  Similarity=0.451  Sum_probs=30.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|+|.|+|..|...+..|.++|++|+++.++.
T Consensus         6 ~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~   38 (286)
T 3ius_A            6 GTLLSFGHGYTARVLSRALAPQGWRIIGTSRNP   38 (286)
T ss_dssp             CEEEEETCCHHHHHHHHHHGGGTCEEEEEESCG
T ss_pred             CcEEEECCcHHHHHHHHHHHHCCCEEEEEEcCh
Confidence            369999999999999999999999999998864

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=92.54  E-value=0.092  Score=44.15  Aligned_cols=31  Identities=26%  Similarity=0.437  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~   36 (342)
                      .|.|||+|..|...|..|+++| ++|.+++++
T Consensus         2 ~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~   33 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCeEEEECCC
Confidence            5999999999999999999999 999999885

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=92.53  E-value=0.11  Score=45.18  Aligned_cols=33  Identities=24%  Similarity=0.422  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      ..|.|||.|..|.+.|..|+++|+  +|+++++++
T Consensus        34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            479999999999999999999999  999999864

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=92.47  E-value=0.11  Score=43.95  Aligned_cols=32  Identities=16%  Similarity=0.080  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..++|+|+|-.|..+|..|++.|.+|+|+.+.
T Consensus       120 k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~  151 (271)
T 1nyt_A          120 LRILLIGAGGASRGVLLPLLSLDCAVTITNRT  151 (271)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCEEEEEECC
Confidence            36999999999999999999999999999875

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=92.45  E-value=0.11  Score=45.57  Aligned_cols=33  Identities=27%  Similarity=0.269  Sum_probs=30.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||.|..|.+.|..|+++|++|+++++++
T Consensus         9 ~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A            9 RPVCILGLGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             CEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            479999999999999999999999999999864

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.40  E-value=0.14  Score=43.55  Aligned_cols=37  Identities=22%  Similarity=0.282  Sum_probs=31.9

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      |+. ..|+|.|+|..|...+..|.++|++|+++.++..
T Consensus         1 M~~-~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~   37 (286)
T 3gpi_A            1 MSL-SKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQ   37 (286)
T ss_dssp             -CC-CCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTS
T ss_pred             CCC-CcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcc
Confidence            543 4799999999999999999999999999988643

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=92.39  E-value=0.12  Score=47.87  Aligned_cols=33  Identities=18%  Similarity=0.201  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|.|||+|..|...|..|+++|++|+++++..
T Consensus         3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~   35 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTV   35 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSST
T ss_pred             CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            479999999999999999999999999998853

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=92.39  E-value=0.12  Score=43.98  Aligned_cols=31  Identities=23%  Similarity=0.296  Sum_probs=28.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|.|||+|..|...|..|++ |++|++++++.
T Consensus         3 ~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~   33 (289)
T 2cvz_A            3 KVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTF   33 (289)
T ss_dssp             CEEEECCSTTHHHHHHHHHT-TSCEEEECSST
T ss_pred             eEEEEcccHHHHHHHHHHhC-CCeEEEEeCCH
Confidence            59999999999999999999 99999998864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=92.36  E-value=0.11  Score=46.20  Aligned_cols=33  Identities=24%  Similarity=0.258  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|+|+|..|+.+|..|+..|.+|++++++.
T Consensus       167 ~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          167 ASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            469999999999999999999999999999853

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=92.32  E-value=0.094  Score=45.43  Aligned_cols=32  Identities=19%  Similarity=0.295  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~   37 (342)
                      +|+|||+|..|...|..|+++|  .+|+++|++.
T Consensus         3 kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~   36 (309)
T 1hyh_A            3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANE   36 (309)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCH
Confidence            6999999999999999999999  7999999863

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=92.24  E-value=0.13  Score=43.78  Aligned_cols=32  Identities=25%  Similarity=0.453  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      .|.|||+|..|.+.|..|++.|+  +|++++++.
T Consensus         3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   36 (281)
T 2g5c_A            3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINP   36 (281)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence            59999999999999999999998  999998863

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=92.23  E-value=0.14  Score=43.59  Aligned_cols=36  Identities=17%  Similarity=0.238  Sum_probs=31.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCC---eEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGL---KVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~---~V~vlE~~~   37 (342)
                      |+. ..|.|||+|.-|.+.|..|.++|+   +|++++++.
T Consensus         1 M~~-~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~   39 (280)
T 3tri_A            1 MNT-SNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSL   39 (280)
T ss_dssp             -CC-SCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSS
T ss_pred             CCC-CEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCH
Confidence            543 579999999999999999999998   999999864

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=92.22  E-value=0.14  Score=47.49  Aligned_cols=50  Identities=18%  Similarity=0.149  Sum_probs=40.4

Q ss_pred             HHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCCcc
Q 019351          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~~  291 (342)
                      +.++++|++|++++.|++|..+  +++..+++ +|.++.||.||+++|..|+.
T Consensus       265 ~~l~~~GV~v~~~~~v~~i~~~--~~v~~v~~~~g~~i~aD~Vv~a~G~~p~~  315 (493)
T 1y56_A          265 QELERWGIDYVHIPNVKRVEGN--EKVERVIDMNNHEYKVDALIFADGRRPDI  315 (493)
T ss_dssp             HHHHHHTCEEEECSSEEEEECS--SSCCEEEETTCCEEECSEEEECCCEEECC
T ss_pred             HHHHhCCcEEEeCCeeEEEecC--CceEEEEeCCCeEEEeCEEEECCCcCcCc
Confidence            6667789999999999999754  34455555 67799999999999988753

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=92.21  E-value=0.12  Score=45.28  Aligned_cols=31  Identities=13%  Similarity=0.209  Sum_probs=28.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -+|+|||+|.+|+-+|..|++.| +|++++++
T Consensus       164 ~~v~VvG~G~~g~e~a~~l~~~~-~v~~v~~~  194 (357)
T 4a9w_A          164 MRVAIIGGGNSGAQILAEVSTVA-ETTWITQH  194 (357)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTS-EEEEECSS
T ss_pred             CEEEEECCCcCHHHHHHHHHhhC-CEEEEECC
Confidence            47999999999999999999998 69999885

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=92.18  E-value=0.11  Score=50.86  Aligned_cols=35  Identities=20%  Similarity=0.177  Sum_probs=31.9

Q ss_pred             ccEEEEC--CCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLG--TGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG--~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+|+|||  ||..|+-+|..|++.|.+|+++++.+ +.
T Consensus       529 k~VvVIG~GgG~~g~e~A~~l~~~G~~Vtlv~~~~-l~  565 (729)
T 1o94_A          529 KRVVILNADTYFMAPSLAEKLATAGHEVTIVSGVH-LA  565 (729)
T ss_dssp             SEEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSC-TT
T ss_pred             CeEEEEcCCCCchHHHHHHHHHHcCCEEEEEeccc-cc
Confidence            3799998  99999999999999999999999987 44

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=92.17  E-value=0.13  Score=46.29  Aligned_cols=39  Identities=15%  Similarity=0.113  Sum_probs=34.9

Q ss_pred             ccEEEECCCchHHHHHHhhhh---CCCeEEEEcCCCCCCCcC
Q 019351            5 YDVIVLGTGLKECILSGLLSV---DGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~---~G~~V~vlE~~~~~GG~~   43 (342)
                      .||+|||||++|+++|..|++   .|++|+|+|+++..+...
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~   43 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRP   43 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceecc
Confidence            379999999999999999999   899999999998765443

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=92.08  E-value=0.079  Score=53.51  Aligned_cols=37  Identities=19%  Similarity=0.070  Sum_probs=33.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -.|+|||+|..|+-+|..|++.|.+|+|+|+++.+..
T Consensus       285 k~vvViGgG~~g~E~A~~L~~~G~~Vtvv~~~~~~~~  321 (965)
T 2gag_A          285 ARIAVATTNDSAYELVRELAATGGVVAVIDARSSISA  321 (965)
T ss_dssp             SSEEEEESSTTHHHHHHHHGGGTCCSEEEESCSSCCH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHcCCcEEEEECCCccch
Confidence            3699999999999999999999999999999987653

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=92.06  E-value=0.15  Score=43.11  Aligned_cols=32  Identities=28%  Similarity=0.439  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..++|||+|-+|-++|+.|++.|.+|+|+.|.
T Consensus       119 k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt  150 (269)
T 3phh_A          119 QNALILGAGGSAKALACELKKQGLQVSVLNRS  150 (269)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            36999999999999999999999999999875

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=92.02  E-value=0.28  Score=46.03  Aligned_cols=41  Identities=27%  Similarity=0.353  Sum_probs=36.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCC--------CCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN--------DYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~--------~~~GG~~~   44 (342)
                      +|||+|||||.+|++||.++++.|.+|+|+|+.        ..+||.|.
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~~G~kValIE~~~~~~~~~k~~lGGtCl   90 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAAHGARVLLFDYVKPSSQGTKWGIGGTCV   90 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHTTTCCEEEECCCCCCTTCCCCCSSHHHH
T ss_pred             CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCCCccc
Confidence            499999999999999999999999999999974        34788653

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=92.00  E-value=0.12  Score=43.59  Aligned_cols=33  Identities=21%  Similarity=0.368  Sum_probs=29.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCe-EEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~-V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|++.|++ |.+++++.
T Consensus        11 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~   44 (266)
T 3d1l_A           11 TPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTE   44 (266)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSH
T ss_pred             CeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCH
Confidence            5799999999999999999999998 89998753

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=91.93  E-value=0.13  Score=47.41  Aligned_cols=31  Identities=32%  Similarity=0.423  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|.|||+|..|...|..|+++|++|++++++
T Consensus         3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~   33 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEChHHHHHHHHHHHHHCCCEEEEEeCC
Confidence            6999999999999999999999999999885

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=91.92  E-value=0.12  Score=44.39  Aligned_cols=32  Identities=9%  Similarity=0.006  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      +|+|||+|..|.+.|+.|+..|+  +|.++|...
T Consensus         2 kI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~   35 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCh
Confidence            69999999999999999999997  999999854

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=91.82  E-value=0.16  Score=42.63  Aligned_cols=33  Identities=9%  Similarity=0.077  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|++.|++|.+++++.
T Consensus         4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~   36 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSL   36 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSH
T ss_pred             cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCH
Confidence            479999999999999999999999999998853

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=91.82  E-value=0.1  Score=50.75  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|+++|++|+++|.+.
T Consensus       315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~  347 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE  347 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECCChhhHHHHHHHHhCCCEEEEEECCH
Confidence            369999999999999999999999999999864

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=91.82  E-value=0.14  Score=45.67  Aligned_cols=33  Identities=27%  Similarity=0.295  Sum_probs=30.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|+|+|..|+.+|..|+..|.+|++++++.
T Consensus       169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            469999999999999999999999999999853

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=91.76  E-value=0.18  Score=40.23  Aligned_cols=36  Identities=17%  Similarity=0.224  Sum_probs=31.6

Q ss_pred             CCCcccEEEECC-CchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |+. ..|+|+|| |..|...+..|.++|++|+++.++.
T Consensus         1 M~~-~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A            1 MAV-KKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             CCC-CEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCC-CEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            553 47999998 9999999999999999999998863

>1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A*

Probab=91.72  E-value=0.14  Score=44.77  Aligned_cols=36  Identities=17%  Similarity=0.128  Sum_probs=32.0

Q ss_pred             CCCcccEEEECC-CchHHHHHHhhhhCCC-------eEEEEcCC
Q 019351            1 MDEEYDVIVLGT-GLKECILSGLLSVDGL-------KVLHMDRN   36 (342)
Q Consensus         1 m~~~~DViIiG~-GiaGl~aA~~L~~~G~-------~V~vlE~~   36 (342)
                      |....+|+|+|| |..|...+..|.++|+       +|.++|..
T Consensus         1 m~~~mkVlVtGaaGfIG~~l~~~L~~~g~~~~~~~~ev~l~D~~   44 (327)
T 1y7t_A            1 MKAPVRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIP   44 (327)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCG
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhCCCCCCCCCCEEEEEeCC
Confidence            666678999997 9999999999999996       89999875

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=91.67  E-value=0.093  Score=46.76  Aligned_cols=38  Identities=26%  Similarity=0.392  Sum_probs=33.6

Q ss_pred             ccEEEECC-CchHHHHHHhhhhCCC---eEEEEcCCC-CCCCc
Q 019351            5 YDVIVLGT-GLKECILSGLLSVDGL---KVLHMDRND-YYGGE   42 (342)
Q Consensus         5 ~DViIiG~-GiaGl~aA~~L~~~G~---~V~vlE~~~-~~GG~   42 (342)
                      ..|+|||| |.+|+.||..+...|.   +|+++|.+. .-||.
T Consensus       215 ~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~~~g~~  257 (394)
T 2qrj_A          215 PTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKETSRGGP  257 (394)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHHTTCSC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeeccccccCCc
Confidence            57999999 9999999999999997   999999976 44665

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=91.67  E-value=0.18  Score=45.25  Aligned_cols=53  Identities=11%  Similarity=0.082  Sum_probs=39.7

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~  289 (342)
                      .+.+.|.+.+.  +++|+++++|++|+.+ ++++. |++ +|.+++||.||.|.|..+
T Consensus       129 ~l~~~L~~~~~--~~~i~~~~~v~~i~~~-~~~v~-v~~~~g~~~~ad~vV~AdG~~S  182 (398)
T 2xdo_A          129 DLRAILLNSLE--NDTVIWDRKLVMLEPG-KKKWT-LTFENKPSETADLVILANGGMS  182 (398)
T ss_dssp             HHHHHHHHTSC--TTSEEESCCEEEEEEC-SSSEE-EEETTSCCEEESEEEECSCTTC
T ss_pred             HHHHHHHhhcC--CCEEEECCEEEEEEEC-CCEEE-EEECCCcEEecCEEEECCCcch
Confidence            45555665443  4689999999999887 55544 554 777899999999999765

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=91.67  E-value=0.14  Score=44.43  Aligned_cols=32  Identities=22%  Similarity=0.381  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      +|+|||+|..|.+.|+.|+..|.  +|.++|...
T Consensus         2 kv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~   35 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVARQDVAKEVVMVDIKD   35 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSSEEEEECSST
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCch
Confidence            69999999999999999999986  899999865

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=91.61  E-value=0.14  Score=44.25  Aligned_cols=33  Identities=18%  Similarity=0.345  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      .+|+|||+|..|...|+.|+.+|.  +|.++|.+.
T Consensus        15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~   49 (303)
T 2i6t_A           15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSE   49 (303)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            579999999999999999999998  999999975

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=91.51  E-value=0.18  Score=43.71  Aligned_cols=32  Identities=31%  Similarity=0.404  Sum_probs=28.2

Q ss_pred             ccEEEECCC-chHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTG-LKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~G-iaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -.|+|||+| +.|..+|..|...|.+|+|+++.
T Consensus       178 k~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~  210 (320)
T 1edz_A          178 KKCIVINRSEIVGRPLAALLANDGATVYSVDVN  210 (320)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHTTSCEEEEECSS
T ss_pred             CEEEEECCCcchHHHHHHHHHHCCCEEEEEeCc
Confidence            469999999 67999999999999999988653

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=91.49  E-value=0.13  Score=44.05  Aligned_cols=32  Identities=13%  Similarity=0.112  Sum_probs=29.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|++.|++|++++ +.
T Consensus         4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~   35 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IG   35 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SS
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CH
Confidence            369999999999999999999999999998 43

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=91.48  E-value=0.18  Score=44.29  Aligned_cols=33  Identities=21%  Similarity=0.182  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|.+.|..|++.|++|++.++++
T Consensus        17 ~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           17 KKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             CEEEEECchHHHHHHHHHHHHCcCEEEEEECCh
Confidence            369999999999999999999999999998864

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=91.46  E-value=0.068  Score=47.02  Aligned_cols=37  Identities=14%  Similarity=0.002  Sum_probs=33.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCC------CeEEEEcCCCCCCCc
Q 019351            6 DVIVLGTGLKECILSGLLSVDG------LKVLHMDRNDYYGGE   42 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G------~~V~vlE~~~~~GG~   42 (342)
                      ||+|||||++||++|+.|+++|      .+|+|+|++...+|.
T Consensus         2 dVvIIGgGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~a   44 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTT   44 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGSG
T ss_pred             cEEEECCCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCCc
Confidence            8999999999999999999998      999999998765554

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=91.42  E-value=0.17  Score=43.46  Aligned_cols=32  Identities=16%  Similarity=0.130  Sum_probs=29.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ..|+|||+|-+|..+|..|++.|. +|+|+.+.
T Consensus       142 ~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~  174 (297)
T 2egg_A          142 KRILVIGAGGGARGIYFSLLSTAAERIDMANRT  174 (297)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCSEEEEECSS
T ss_pred             CEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence            369999999999999999999997 99999875

>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A

Probab=91.41  E-value=0.16  Score=47.14  Aligned_cols=33  Identities=15%  Similarity=0.217  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHH-HHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~-aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|.|||.|-+|++ +|..|.++|++|++.|.+.
T Consensus        23 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   56 (494)
T 4hv4_A           23 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   56 (494)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCC
Confidence            47999999999997 6999999999999999864

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=91.40  E-value=0.15  Score=51.90  Aligned_cols=33  Identities=27%  Similarity=0.275  Sum_probs=30.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~   38 (342)
                      +|+|||||..|+-+|..|++.|. +|+++++++.
T Consensus       334 ~VvVIGgG~~g~e~A~~~~~~G~~~Vtvv~r~~~  367 (1025)
T 1gte_A          334 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF  367 (1025)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             cEEEECCChHHHHHHHHHHHcCCCEEEEEEecCh
Confidence            79999999999999999999996 8999999863

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=91.39  E-value=0.15  Score=42.86  Aligned_cols=30  Identities=23%  Similarity=0.227  Sum_probs=28.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~   35 (342)
                      .|.|||+|..|...|..|+++|++|+++++
T Consensus         2 ~I~iIG~G~mG~~la~~l~~~g~~V~~~~~   31 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLE   31 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCT
T ss_pred             eEEEEechHHHHHHHHHHHHCCCeEEEeCC
Confidence            599999999999999999999999999866

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=91.38  E-value=0.14  Score=44.54  Aligned_cols=32  Identities=16%  Similarity=0.081  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      .+|+|||+|..|.++|+.|+..|.  +|.++|.+
T Consensus        22 ~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~   55 (330)
T 3ldh_A           22 NKITVVGCDAVGMADAISVLMKDLADEVALVDVM   55 (330)
T ss_dssp             CEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECC
Confidence            579999999999999999999997  89999984

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=91.33  E-value=0.15  Score=46.82  Aligned_cols=32  Identities=19%  Similarity=0.166  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|+|||+|-.|...|..|.+.|.+|+|++..
T Consensus        13 ~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~   44 (457)
T 1pjq_A           13 RDCLIVGGGDVAERKARLLLEAGARLTVNALT   44 (457)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHhCcCEEEEEcCC
Confidence            46999999999999999999999999999975

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=91.30  E-value=0.22  Score=42.62  Aligned_cols=37  Identities=14%  Similarity=0.178  Sum_probs=31.6

Q ss_pred             CCCcccEEEECC-CchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |+.+..|+|+|| |..|...+..|.++|++|.++.++.
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~   38 (308)
T 1qyc_A            1 MGSRSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   38 (308)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCc
Confidence            653457999997 9999999999999999999998864

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=91.25  E-value=0.13  Score=43.71  Aligned_cols=32  Identities=19%  Similarity=0.154  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..++|+|+|-+|..+|..|++.|.+|+|+.+.
T Consensus       120 ~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~  151 (272)
T 1p77_A          120 QHVLILGAGGATKGVLLPLLQAQQNIVLANRT  151 (272)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            36999999999999999999999999999875

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=91.22  E-value=0.18  Score=43.76  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=29.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      .+|+|||+|..|.+.|+.|+..|.  +|.++|.+
T Consensus         7 ~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~   40 (316)
T 1ldn_A            7 ARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence            589999999999999999998885  89999986

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=91.10  E-value=0.44  Score=41.75  Aligned_cols=58  Identities=5%  Similarity=-0.014  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHH-cCcEEEcCCccceEEEcCC----------------C--cEEEEEe-------C--------CcEEE
Q 019351          232 GELPQAFARLSAV-YGGTYMLNKPECKVEFDEE----------------G--KVVGVTS-------E--------GETAK  277 (342)
Q Consensus       232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~----------------~--~~~~v~~-------~--------g~~~~  277 (342)
                      ..+...|.+.+++ .|++++.++.|+++..+++                +  ++.+|.+       +        ..+|+
T Consensus       160 ~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~  239 (344)
T 3jsk_A          160 ALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTIN  239 (344)
T ss_dssp             HHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEE
T ss_pred             HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEE
Confidence            4667888888887 4999999999999987621                3  6666654       1        24799


Q ss_pred             cCEEEECCCCCC
Q 019351          278 CKKVVCDPSYLP  289 (342)
Q Consensus       278 a~~vI~~~~~~~  289 (342)
                      |+.||.|+|...
T Consensus       240 Ak~VV~ATG~~s  251 (344)
T 3jsk_A          240 APVIISTTGHDG  251 (344)
T ss_dssp             CSEEEECCCSSS
T ss_pred             cCEEEECCCCCc
Confidence            999999998653

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=91.06  E-value=0.17  Score=49.04  Aligned_cols=37  Identities=16%  Similarity=0.146  Sum_probs=33.4

Q ss_pred             cEEEEC--CCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            6 DVIVLG--TGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         6 DViIiG--~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      +|+|||  +|..|+-+|..|++.|.+|+++++.+.+...
T Consensus       525 ~VvViG~ggG~~g~e~A~~L~~~g~~Vtlv~~~~~l~~~  563 (690)
T 3k30_A          525 KVVVYDDDHYYLGGVVAELLAQKGYEVSIVTPGAQVSSW  563 (690)
T ss_dssp             EEEEEECSCSSHHHHHHHHHHHTTCEEEEEESSSSTTGG
T ss_pred             EEEEEcCCCCccHHHHHHHHHhCCCeeEEEecccccccc
Confidence            599999  9999999999999999999999998776543

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=91.04  E-value=0.17  Score=49.18  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=30.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|.|||+|..|...|+.++.+|++|+++|..+
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~  349 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDP  349 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred             cEEEEEcccHHHHHHHHHHHhCCCchhcccchH
Confidence            479999999999999999999999999999864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=90.93  E-value=0.2  Score=43.09  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|.|||+|..|..+|..|...|.+|+++++.
T Consensus       158 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~  189 (300)
T 2rir_A          158 SQVAVLGLGRTGMTIARTFAALGANVKVGARS  189 (300)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEEcccHHHHHHHHHHHHCCCEEEEEECC
Confidence            46999999999999999999999999999985

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=90.92  E-value=0.17  Score=42.97  Aligned_cols=32  Identities=28%  Similarity=0.368  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|+|||+|-.|.+.|..|.+.|.+|+++++.
T Consensus       130 ~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~  161 (275)
T 2hk9_A          130 KSILVLGAGGASRAVIYALVKEGAKVFLWNRT  161 (275)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHcCCEEEEEECC
Confidence            46999999999999999999999999999875

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=90.88  E-value=0.23  Score=40.08  Aligned_cols=32  Identities=19%  Similarity=0.227  Sum_probs=29.3

Q ss_pred             cEEEECC-CchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|+|.|| |..|...+..|.++|++|+++.++.
T Consensus         2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   34 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNA   34 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCS
T ss_pred             eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCc
Confidence            5999996 9999999999999999999998863

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=90.87  E-value=0.24  Score=43.48  Aligned_cols=32  Identities=13%  Similarity=0.186  Sum_probs=29.1

Q ss_pred             ccEEEECC-CchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            5 YDVIVLGT-GLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~-GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      .+|+|||+ |..|.++|+.|...|.  +|+++|.+
T Consensus         9 ~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~   43 (343)
T 3fi9_A            9 EKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPF   43 (343)
T ss_dssp             SEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSC
T ss_pred             CEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            58999998 9999999999999994  89999975

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=90.79  E-value=0.21  Score=43.50  Aligned_cols=32  Identities=19%  Similarity=0.271  Sum_probs=29.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      .+|+|||+|..|.++|+.|+..|.  ++.++|.+
T Consensus        10 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~   43 (326)
T 3vku_A           10 QKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCC
Confidence            579999999999999999999996  89999984

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=90.78  E-value=0.26  Score=43.01  Aligned_cols=32  Identities=16%  Similarity=0.168  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      .+|+|||+|..|.++|+.|+.+|.  ++.++|.+
T Consensus        20 ~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~   53 (331)
T 4aj2_A           20 NKITVVGVGAVGMACAISILMKDLADELALVDVI   53 (331)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCC
Confidence            589999999999999999999996  89999985

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=90.77  E-value=0.62  Score=40.49  Aligned_cols=57  Identities=9%  Similarity=-0.006  Sum_probs=43.4

Q ss_pred             ChHHHHHHHHHHHc-CcEEEcCCccceEEEcC--C-C--cEEEEEe---------------CCcEEEc------------
Q 019351          232 GELPQAFARLSAVY-GGTYMLNKPECKVEFDE--E-G--KVVGVTS---------------EGETAKC------------  278 (342)
Q Consensus       232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~--~-~--~~~~v~~---------------~g~~~~a------------  278 (342)
                      ..+...|.+.+.+. |++++.+++|+++..++  + +  ++.+|.+               +..++.|            
T Consensus       146 ~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~  225 (326)
T 2gjc_A          146 ALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLS  225 (326)
T ss_dssp             HHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSS
T ss_pred             HHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeecccccccccc
Confidence            45677888888775 99999999999998763  2 4  7777754               2356999            


Q ss_pred             ---CEEEECCCCC
Q 019351          279 ---KKVVCDPSYL  288 (342)
Q Consensus       279 ---~~vI~~~~~~  288 (342)
                         +.||.|+|..
T Consensus       226 ~~~~~VV~ATG~~  238 (326)
T 2gjc_A          226 QKHGVILSTTGHD  238 (326)
T ss_dssp             TTCCEEEECCCCC
T ss_pred             ccCCEEEECcCCC
Confidence               9999999865

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=90.73  E-value=0.23  Score=42.74  Aligned_cols=32  Identities=16%  Similarity=0.164  Sum_probs=30.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|.+||-|.-|...|..|.++|++|+|+++..
T Consensus         5 kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~   36 (300)
T 3obb_A            5 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQ   36 (300)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             EEEEeeehHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            69999999999999999999999999999864

>4b4o_A Epimerase family protein SDR39U1; isomerase; HET: NDP PE4; 2.70A {Homo sapiens}

Probab=90.70  E-value=0.26  Score=42.09  Aligned_cols=34  Identities=29%  Similarity=0.334  Sum_probs=30.8

Q ss_pred             cEEEECC-CchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      +|+|.|| |..|...+.+|.++|++|+++-+++..
T Consensus         2 kILVTGatGfIG~~L~~~L~~~G~~V~~l~R~~~~   36 (298)
T 4b4o_A            2 RVLVGGGTGFIGTALTQLLNARGHEVTLVSRKPGP   36 (298)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCCT
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCCCc
Confidence            5999998 999999999999999999999886544

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=90.68  E-value=0.27  Score=42.19  Aligned_cols=37  Identities=19%  Similarity=0.212  Sum_probs=31.6

Q ss_pred             CCCcccEEEECC-CchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |+.+..|+|+|| |..|...+..|.++|++|+++.++.
T Consensus         1 M~~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~   38 (313)
T 1qyd_A            1 MDKKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   38 (313)
T ss_dssp             -CCCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCCCCEEEEEcCCcHHHHHHHHHHHhCCCcEEEEECCC
Confidence            654457999996 9999999999999999999998864

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=90.54  E-value=0.23  Score=42.56  Aligned_cols=32  Identities=28%  Similarity=0.243  Sum_probs=29.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|.|||+|..|..+|..|+..|.+|+++++.
T Consensus       156 ~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~  187 (293)
T 3d4o_A          156 ANVAVLGLGRVGMSVARKFAALGAKVKVGARE  187 (293)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEEECC
Confidence            46999999999999999999999999999985

>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*

Probab=90.51  E-value=0.22  Score=47.08  Aligned_cols=34  Identities=18%  Similarity=0.405  Sum_probs=31.8

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -+|+|+|+|-.|...|..|.+.|++|+++|+++.
T Consensus       349 ~~viIiG~G~~G~~la~~L~~~g~~v~vid~d~~  382 (565)
T 4gx0_A          349 ELIFIIGHGRIGCAAAAFLDRKPVPFILIDRQES  382 (565)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEECChH
Confidence            4699999999999999999999999999999865

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=90.51  E-value=0.23  Score=45.52  Aligned_cols=33  Identities=18%  Similarity=0.129  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|+|+|-.|..+|..|+..|.+|++.|.++
T Consensus       266 KtVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~  298 (488)
T 3ond_A          266 KVAVVAGYGDVGKGCAAALKQAGARVIVTEIDP  298 (488)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            368999999999999999999999999998853

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=90.51  E-value=0.25  Score=41.36  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=29.0

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      .++|||+|-+|-++|+.|.+.|. +|+|+.+.
T Consensus       110 ~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~  141 (253)
T 3u62_A          110 PVVVVGAGGAARAVIYALLQMGVKDIWVVNRT  141 (253)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred             eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence            69999999999999999999997 89999885

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=90.48  E-value=0.26  Score=41.21  Aligned_cols=32  Identities=19%  Similarity=0.269  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ..|+|||+|-.|..+|..|+..|. +++|+|..
T Consensus        29 ~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d   61 (251)
T 1zud_1           29 SQVLIIGLGGLGTPAALYLAGAGVGTLVLADDD   61 (251)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHTTCSEEEEECCC
T ss_pred             CcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence            579999999999999999999995 89999885

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=90.46  E-value=0.22  Score=45.69  Aligned_cols=35  Identities=23%  Similarity=0.333  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhC--------------------C-CeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVD--------------------G-LKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~--------------------G-~~V~vlE~~~~~   39 (342)
                      -.|+|||+|.+|+-+|..|++.                    | .+|+|+++++..
T Consensus       148 ~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~  203 (456)
T 1lqt_A          148 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPL  203 (456)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGG
T ss_pred             CEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChh
Confidence            3699999999999999999974                    6 599999987543

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=90.40  E-value=0.25  Score=42.84  Aligned_cols=32  Identities=31%  Similarity=0.210  Sum_probs=29.4

Q ss_pred             cEEEECC-CchHHHHHHhhhhCC--CeEEEEcCCC
Q 019351            6 DVIVLGT-GLKECILSGLLSVDG--LKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~-GiaGl~aA~~L~~~G--~~V~vlE~~~   37 (342)
                      +|+|||| |..|.++|..|+..|  .+|.++|...
T Consensus         2 KI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~   36 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCc
Confidence            6999998 999999999999998  6899999865

>3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A*

Probab=90.31  E-value=0.29  Score=44.06  Aligned_cols=34  Identities=26%  Similarity=0.174  Sum_probs=30.7

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMD   34 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE   34 (342)
                      |++...|.|+|+|-.|...+..+.+.|++|.+++
T Consensus        21 mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d   54 (403)
T 3k5i_A           21 MWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD   54 (403)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE
Confidence            4344689999999999999999999999999999

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=90.27  E-value=0.22  Score=42.56  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhC--CCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|+++  |.+|++++++.
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~   41 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSD   41 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSH
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCH
Confidence            4799999999999999999988  68999998753

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=90.27  E-value=0.26  Score=41.44  Aligned_cols=31  Identities=29%  Similarity=0.343  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .++|||+|-.|...|..|.+.|.+|+++++.
T Consensus       118 ~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~  148 (263)
T 2d5c_A          118 PALVLGAGGAGRAVAFALREAGLEVWVWNRT  148 (263)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             eEEEECCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            6999999999999999999999999999875

>3vps_A TUNA, NAD-dependent epimerase/dehydratase; tunicamycins, biosynthesis, EXO-glycal, rossman transferase; HET: UD1 NAD; 1.90A {Streptomyces chartreusis}

Probab=90.26  E-value=0.27  Score=42.27  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=31.1

Q ss_pred             ccEEEECC-CchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ..|+|.|| |..|...+..|.++|++|+++.+...
T Consensus         8 ~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~   42 (321)
T 3vps_A            8 HRILITGGAGFIGGHLARALVASGEEVTVLDDLRV   42 (321)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCEEEECCCSS
T ss_pred             CeEEEECCCChHHHHHHHHHHHCCCEEEEEecCCc
Confidence            57999999 99999999999999999999988654

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=90.24  E-value=0.28  Score=39.80  Aligned_cols=31  Identities=26%  Similarity=0.365  Sum_probs=28.9

Q ss_pred             cEEEECC-CchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .|+|.|| |..|...|..|.++|++|+++.++
T Consensus         2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~   33 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRD   33 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEec
Confidence            4999998 999999999999999999999875

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=90.23  E-value=0.19  Score=47.17  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=30.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      -.|+|||+|.+|+-.|..|++.|.+|+++++.+.
T Consensus       187 k~V~VIG~G~sg~e~a~~l~~~~~~vtv~~r~~~  220 (542)
T 1w4x_A          187 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRTPH  220 (542)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESSCC
T ss_pred             CEEEEECCCccHHHHHHHHhhcCceEEEEEcCCc
Confidence            3699999999999999999999999999998653

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=90.22  E-value=0.24  Score=42.36  Aligned_cols=31  Identities=16%  Similarity=0.324  Sum_probs=28.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..++|+|+|-.|..+|..|++.| +|+++.++
T Consensus       129 k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~  159 (287)
T 1nvt_A          129 KNIVIYGAGGAARAVAFELAKDN-NIIIANRT  159 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECSS
T ss_pred             CEEEEECchHHHHHHHHHHHHCC-CEEEEECC
Confidence            36999999999999999999999 99999774

>3enk_A UDP-glucose 4-epimerase; seattle structural genomics center for infectious disease, ssgcid, isomerase, NAD; HET: NAD GUD; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.0

Probab=90.21  E-value=0.35  Score=42.10  Aligned_cols=38  Identities=21%  Similarity=0.179  Sum_probs=32.4

Q ss_pred             CCCcccEEEECC-CchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         1 m~~~~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      |+....|+|.|| |..|...|..|.++|++|+++.+...
T Consensus         2 M~~~~~vlVTGatG~iG~~l~~~L~~~G~~V~~~~r~~~   40 (341)
T 3enk_A            2 MSTKGTILVTGGAGYIGSHTAVELLAHGYDVVIADNLVN   40 (341)
T ss_dssp             CCSSCEEEEETTTSHHHHHHHHHHHHTTCEEEEECCCSS
T ss_pred             CCCCcEEEEecCCcHHHHHHHHHHHHCCCcEEEEecCCc
Confidence            555567999995 99999999999999999999988643

>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}

Probab=90.07  E-value=0.29  Score=45.39  Aligned_cols=33  Identities=15%  Similarity=0.217  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHH-HHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~-aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||-|-+|++ +|..|.+.|++|.+.|...
T Consensus        20 ~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~   53 (491)
T 2f00_A           20 RHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAP   53 (491)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEEEcCHHHHHHHHHHHHhCCCeEEEECCCC
Confidence            35999999999998 8899999999999999865

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=90.00  E-value=0.31  Score=42.54  Aligned_cols=32  Identities=31%  Similarity=0.482  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~   36 (342)
                      ..|+|||+|-.|..+|..|+..| -+++++|..
T Consensus        35 ~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~D   67 (340)
T 3rui_A           35 TKVLLLGAGTLGCYVSRALIAWGVRKITFVDNG   67 (340)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCEEEEecCC
Confidence            57999999999999999999999 589999885

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=89.93  E-value=0.24  Score=42.03  Aligned_cols=33  Identities=15%  Similarity=0.051  Sum_probs=29.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      ..++|+|+|-+|..+|..|++.|. +|+|+.+..
T Consensus       118 k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~  151 (277)
T 3don_A          118 AYILILGAGGASKGIANELYKIVRPTLTVANRTM  151 (277)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCG
T ss_pred             CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence            469999999999999999999997 899998753

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=89.89  E-value=0.24  Score=42.79  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=28.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      +|+|||+|..|.+.|+.|+..|+ +|.++|...
T Consensus         1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~   33 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTP   33 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHHHTCSCEEEECSST
T ss_pred             CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCCh
Confidence            48999999999999999999888 699999863

>1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A

Probab=89.86  E-value=0.24  Score=43.26  Aligned_cols=36  Identities=17%  Similarity=0.107  Sum_probs=29.9

Q ss_pred             CCC-cccEEEECC-CchHHHHHHhhhhCCC-------eEEEEcCC
Q 019351            1 MDE-EYDVIVLGT-GLKECILSGLLSVDGL-------KVLHMDRN   36 (342)
Q Consensus         1 m~~-~~DViIiG~-GiaGl~aA~~L~~~G~-------~V~vlE~~   36 (342)
                      |++ ..+|+|+|| |..|...|..|...|.       +|.++|..
T Consensus         1 m~~~~~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~   45 (329)
T 1b8p_A            1 MAKTPMRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIP   45 (329)
T ss_dssp             --CCCEEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCS
T ss_pred             CCCCCCEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCC
Confidence            533 468999998 9999999999999885       79999875

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=89.85  E-value=0.36  Score=41.20  Aligned_cols=32  Identities=16%  Similarity=0.225  Sum_probs=28.9

Q ss_pred             ccEEEECCC-chHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTG-LKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~G-iaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -+|+|||+| +.|..+|..|...|.+|+++.+.
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~  198 (301)
T 1a4i_A          166 RHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSK  198 (301)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CEEEEECCCchHHHHHHHHHHhCCCeEEEEECC
Confidence            479999999 68999999999999999999743

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=89.57  E-value=0.38  Score=41.10  Aligned_cols=32  Identities=19%  Similarity=0.268  Sum_probs=28.5

Q ss_pred             ccEEEECC-CchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .+++|||. |+.|..+|..|.+.|..|+++.++
T Consensus       166 k~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~  198 (300)
T 4a26_A          166 KRAVVLGRSNIVGAPVAALLMKENATVTIVHSG  198 (300)
T ss_dssp             CEEEEECCCTTTHHHHHHHHHHTTCEEEEECTT
T ss_pred             CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence            47999995 568999999999999999999874

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=89.50  E-value=0.27  Score=42.02  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~   36 (342)
                      ..|+|||+|-.|..+|.+|+.+| -+++|+|..
T Consensus        37 ~~VlVvGaGGlGs~va~~La~aGVG~i~lvD~D   69 (292)
T 3h8v_A           37 FAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYD   69 (292)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CeEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence            57999999999999999999999 589999985

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=89.48  E-value=0.33  Score=42.98  Aligned_cols=32  Identities=31%  Similarity=0.327  Sum_probs=29.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|+|+|.|-.|..+|..|.+.|.+|++.|..
T Consensus       174 ktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~  205 (364)
T 1leh_A          174 LAVSVQGLGNVAKALCKKLNTEGAKLVVTDVN  205 (364)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECchHHHHHHHHHHHHCCCEEEEEcCC
Confidence            46999999999999999999999999999863

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=89.45  E-value=0.31  Score=42.46  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=29.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      ..+|+|||+|..|.+.|+.|+..+.  ++.++|.+
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~   43 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIF   43 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCC
Confidence            3689999999999999999998885  89999974

>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*

Probab=89.32  E-value=0.29  Score=45.12  Aligned_cols=33  Identities=18%  Similarity=0.290  Sum_probs=29.9

Q ss_pred             ccEEEECCCchHHH-HHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECI-LSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~-aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||-|-+|++ +|..|.+.|++|.+.|...
T Consensus        19 ~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~   52 (475)
T 1p3d_A           19 QQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD   52 (475)
T ss_dssp             CEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred             CEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCC
Confidence            35999999999998 8899999999999999865

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=89.31  E-value=0.35  Score=44.19  Aligned_cols=35  Identities=29%  Similarity=0.380  Sum_probs=30.2

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      |.. ..|+|+|+|-.|...|..|++.|.+|++++++
T Consensus         1 M~~-k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~   35 (450)
T 1ff9_A            1 MAT-KSVLMLGSGFVTRPTLDVLTDSGIKVTVACRT   35 (450)
T ss_dssp             -CC-CEEEEECCSTTHHHHHHHHHTTTCEEEEEESS
T ss_pred             CCC-CEEEEECCCHHHHHHHHHHHhCcCEEEEEECC
Confidence            543 46999999999999999999999999999875

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=89.29  E-value=0.35  Score=42.30  Aligned_cols=33  Identities=12%  Similarity=0.140  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||.|..|...|..|+..|.+|+++++..
T Consensus       151 ~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  183 (334)
T 2dbq_A          151 KTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTR  183 (334)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            369999999999999999999999999999864

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=89.25  E-value=0.22  Score=43.62  Aligned_cols=32  Identities=9%  Similarity=0.030  Sum_probs=29.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -+|+|+|+|-.|...|..|.+.|+ |+++|+++
T Consensus       116 ~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~  147 (336)
T 1lnq_A          116 RHVVICGWSESTLECLRELRGSEV-FVLAEDEN  147 (336)
T ss_dssp             CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGG
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCc-EEEEeCCh
Confidence            369999999999999999999999 99999864

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=88.77  E-value=0.073  Score=42.95  Aligned_cols=33  Identities=27%  Similarity=0.143  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|.|||+|..|...|..|.+.|++|+++++..
T Consensus        20 ~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~   52 (201)
T 2yjz_A           20 GVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNP   52 (201)
Confidence            469999999999999999999999999998764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=89.11  E-value=0.48  Score=42.23  Aligned_cols=45  Identities=18%  Similarity=0.138  Sum_probs=35.8

Q ss_pred             cCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCC
Q 019351          245 YGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLP  289 (342)
Q Consensus       245 ~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~  289 (342)
                      .+..|+++++|++++..+++++.....+|.+++||.||.|.|..+
T Consensus       122 ~~~~v~~~~~v~~~~~~~~~~v~v~~~dG~~~~adlvVgADG~~S  166 (412)
T 4hb9_A          122 LANTIQWNKTFVRYEHIENGGIKIFFADGSHENVDVLVGADGSNS  166 (412)
T ss_dssp             CTTTEECSCCEEEEEECTTSCEEEEETTSCEEEESEEEECCCTTC
T ss_pred             ccceEEEEEEEEeeeEcCCCeEEEEECCCCEEEeeEEEECCCCCc
Confidence            367899999999998764555554444889999999999998764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=89.10  E-value=0.34  Score=39.75  Aligned_cols=33  Identities=30%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             ccEEEECC-CchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ..|+|.|| |..|..+|..|.++|++|+++.++.
T Consensus        22 ~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           22 MRVLVVGANGKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             CeEEEECCCChHHHHHHHHHHhCCCeEEEEECCh
Confidence            46999998 9999999999999999999998853

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=89.10  E-value=0.34  Score=44.68  Aligned_cols=33  Identities=15%  Similarity=0.107  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|||.|..|..+|..|...|.+|+++|..+
T Consensus       275 ktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          275 KKVLICGYGDVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            469999999999999999999999999999854

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=89.06  E-value=0.3  Score=41.84  Aligned_cols=32  Identities=9%  Similarity=0.006  Sum_probs=28.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      +|+|||+|..|.++|+.|..+|.  ++.++|.+.
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~   35 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAE   35 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCC
Confidence            69999999999999999998884  799999853

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	1e-108
d1vg0a1	491	c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {	3e-22
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	3e-63
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-49
d1d5ta2	97	d.16.1.6 (A:292-388) Guanine nucleotide dissociati	2e-19
d2bcgg3	98	d.16.1.6 (G:302-399) Guanine nucleotide dissociati	9e-18
d1vg0a2	113	d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Ra	5e-09
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	2e-06
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	3e-04

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  322 bits (825), Expect = e-108
 Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 20/271 (7%)

Query: 65  LGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDME 124
           +   R +N+D++ K + + G L+ +LI ++V++Y  FK +     + +G V +VP +  +
Sbjct: 216 IKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRAD 275

Query: 125 ALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFI 184
              S  + + EKR   KF  +  +Y+E  P  +   + T  T  E +    L  N   F+
Sbjct: 276 VFNSKQLTMVEKRMLMKFLTFCVEYEE-HPDEYRAYEGT--TFSEYLKTQKLTPNLQYFV 332

Query: 185 GHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAV 244
            H++A+  +        +D +K  K + + + R+ G +P+++PLYG GELPQ F R+ AV
Sbjct: 333 LHSIAMTSETTS---CTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAV 388

Query: 245 YGGTYMLNKPECKVEFDEEGKVVG--VTSEGETAKCKKVVCDPSYLPNKVRKVGRVARAI 302
           +GG Y L      +  D+E +     +   G+    K  + + SYL        RV+R  
Sbjct: 389 FGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENT--CSRVSRDC 446

Query: 303 AIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
                P        S   +      G  +D 
Sbjct: 447 -YNDLP--------SNVYVCSGPDSGLGNDN 468

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 491

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 94.8 bits (235), Expect = 3e-22
 Identities = 22/72 (30%), Positives = 37/72 (51%)

Query: 3  EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPP 62
           ++DVIV+GTGL E I++   S  G +VLH+D   YYGG  +S +   L    +  ++  
Sbjct: 5  SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENN 64

Query: 63 AHLGSSRDYNVD 74
            +  +  +   
Sbjct: 65 DVVTENSMWQEQ 76

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  201 bits (510), Expect = 3e-63
 Identities = 159/296 (53%), Positives = 222/296 (75%), Gaps = 6/296 (2%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGN-- 58
           +D +YDVIVLGTG+ ECILSGLLSVDG KVLH+D+ D+YGGE++S+ L QL+++F+ N  
Sbjct: 2   IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPI 61

Query: 59  --EQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVH 116
             E+  +  G  RD+NVD+IPKF++ANG L  +LIHTDVT+Y+ FK V GS+V+ +GK++
Sbjct: 62  SKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIY 121

Query: 117 KVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGL 176
           KVPA ++EA+ SPLMGIFEKRR +KF  ++  Y E+D  TH+G+DL + T  E+  K+GL
Sbjct: 122 KVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFGL 181

Query: 177 DDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ 236
            ++T +FIGHA+AL  +D YL +PA  + +R+ LY +S+AR+    PY+YP+YGLGELPQ
Sbjct: 182 GNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKS-PYLYPMYGLGELPQ 240

Query: 237 AFARLSAVYGGTYMLNKPECKVEFDEE-GKVVGVTSEGETAKCKKVVCDPSYLPNK 291
            FARLSA+YGGTYML+ P  +V + ++ GK  GV ++  T K   V+ DP+Y P K
Sbjct: 241 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEK 296

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  166 bits (421), Expect = 1e-49
 Identities = 184/293 (62%), Positives = 239/293 (81%), Gaps = 3/293 (1%)

Query: 1   MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLI-QLWKRFRGNE 59
           MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  + +L+KRF+  E
Sbjct: 3   MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62

Query: 60  QPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVP 119
            PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP
Sbjct: 63  GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122

Query: 120 ATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDN 179
           +T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            IDF GHALAL+R D YL++P L+T+ R+KLY+ES+AR+ G SPY+YPLYGLGELPQ FA
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARY-GKSPYLYPLYGLGELPQGFA 241

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNKV 292
           RLSA+YGGTYMLNKP   +  +   KVVGV SEGE A+CK+++CDPSY+P++V
Sbjct: 242 RLSAIYGGTYMLNKPVDDIIMENG-KVVGVKSEGEVARCKQLICDPSYVPDRV 293

>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 97

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 79.7 bits (197), Expect = 2e-19
 Identities = 25/41 (60%), Positives = 33/41 (80%)

Query: 293 RKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           RK G+V R I I+SHPI NTND++S Q+I+PQ Q+ R+SDI
Sbjct: 1   RKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDI 41

>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 98

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.1 bits (185), Expect = 9e-18
 Identities = 24/42 (57%), Positives = 35/42 (83%), Gaps = 1/42 (2%)

Query: 293 RKVG-RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDI 333
           +  G RV RAI I++HP+PNT+++ S+Q+I+PQ QLGR+SDI
Sbjct: 1   KSTGQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDI 42

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.4 bits (123), Expect = 5e-09
 Identities = 5/38 (13%), Positives = 16/38 (42%)

Query: 297 RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQ 334
           +++RA+ I    +  T+    V ++    +      ++
Sbjct: 4   QISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVR 41

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 42/290 (14%), Positives = 94/290 (32%), Gaps = 38/290 (13%)

Query: 6   DVIVLGTGLKECILSGL-----LSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQ 60
            V+++G G+     +GL     L+  G +V  ++ ++  GG   +        R      
Sbjct: 32  HVVIVGAGM-----AGLSAAYVLAGAGHQVTVLEASERPGGRVRTY-------RNEEAGW 79

Query: 61  PPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPA 120
                         ++ ++I      +      +   + + K +        G+V K P 
Sbjct: 80  YANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKV----GEVKKDPG 135

Query: 121 TDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRE-LIAKYGLDDN 179
                +K    G    +   +    V +  +    ++        +T+E LI +  L   
Sbjct: 136 LLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEGDLSPG 195

Query: 180 TIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFA 239
            +D IG    L  +D       ++++K   +       F     +   + G+ +LP A  
Sbjct: 196 AVDMIGD---LLNEDSGYYVSFIESLKHDDI-------FAYEKRFDEIVDGMDKLPTAMY 245

Query: 240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGV---TSEGETAKCKKVVCDPS 286
           R           N    K++ +++   V     + E  +     V+   +
Sbjct: 246 RD---IQDKVHFNAQVIKIQQNDQKVTVVYETLSKETPSVTADYVIVCTT 292

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 1  MDEEYDVIVLGTGLKECILSGLLSVDGLKVL 31
          MD +YDV+++G+G   C  +  L   G KV 
Sbjct: 1  MDIKYDVVIVGSGPIGCTYARELVGAGYKVA 31

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	100.0
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	100.0
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	100.0
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.87
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.85
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.81
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	99.74
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	99.71
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	99.71
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.69
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	99.67
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	99.64
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.57
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	99.55
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.55
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.5
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	99.48
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.45
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	99.44
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	99.36
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.29
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	99.27
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	99.2
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.19
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	99.12
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	99.12
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	99.07
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.04
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	99.02
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.01
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	99.01
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	99.0
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.0
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	98.99
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.99
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	98.98
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.94
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.93
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	98.89
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.86
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.78
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	98.78
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	98.77
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	98.75
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	98.75
d1d5ta2	97	Guanine nucleotide dissociation inhibitor, GDI {Co	98.75
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	98.73
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	98.71
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	98.71
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	98.69
d2bcgg3	98	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.69
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.65
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	98.64
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	98.64
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	98.64
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	98.64
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	98.64
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	98.64
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.63
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	98.62
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	98.62
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.6
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.59
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	98.54
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	98.52
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	98.5
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	98.46
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	98.41
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	98.4
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	98.19
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	98.08
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.05
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.95
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.94
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	97.93
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.93
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	97.91
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	97.81
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	97.79
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	97.71
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	97.68
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	97.67
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.66
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	97.56
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	97.53
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.53
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	97.4
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	97.38
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.37
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.35
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	97.35
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	97.28
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	97.26
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.2
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	97.19
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.14
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	97.08
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.96
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	96.94
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.9
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	96.9
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	96.85
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	96.83
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.81
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	96.79
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	96.77
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.76
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	96.68
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	96.62
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	96.61
d1vg0a2	113	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.58
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.57
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	96.57
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	96.55
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.48
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	96.43
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	96.4
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	96.38
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	96.33
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.28
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	96.06
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.05
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	95.83
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.74
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	95.71
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	95.58
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	95.5
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	95.36
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.36
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	95.25
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	95.22
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	95.09
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	94.96
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	94.96
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	94.91
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	94.87
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	94.79
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	94.78
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	94.78
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	94.69
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	94.68
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	94.66
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	94.66
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	94.63
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	94.52
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	94.46
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	94.43
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	94.39
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	94.35
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	94.34
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	94.28
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.1
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	93.96
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	93.96
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	93.96
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	93.88
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	93.86
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	93.85
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	93.79
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	93.48
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	93.44
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	93.03
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	92.79
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	92.77
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	92.74
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.65
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	92.65
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	92.57
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	92.39
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.13
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.12
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	91.83
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	91.67
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	91.55
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	91.47
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	91.45
d1a9xa4	121	Carbamoyl phosphate synthetase (CPS), large subuni	91.3
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	91.11
d2c5aa1	363	GDP-mannose-3', 5'-epimerase {Thale cress (Arabido	91.01
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	90.94
d1w4xa2	235	Phenylacetone monooxygenase {Thermobifida fusca [T	90.9
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	90.86
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	90.79
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	90.32
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	90.29
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	90.08
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	90.04
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	89.89
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.77
d1ps9a2	162	2,4-dienoyl-CoA reductase, C-terminal domain {Esch	89.26
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	89.16
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	89.03
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	88.95
d1a9xa3	127	Carbamoyl phosphate synthetase (CPS), large subuni	88.9
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	88.81
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	88.5
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	88.35
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	88.34
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	88.03
d1cjca1	225	Adrenodoxin reductase of mitochondrial p450 system	87.78
d1lqta1	216	Ferredoxin:NADP reductase FprA {Mycobacterium tube	87.32
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	86.22
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	86.19
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	86.19
d1ek6a_	346	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.92
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	85.56
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	85.49
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	85.46
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	84.98
d1fjha_	257	3-alpha-hydroxysteroid dehydrogenase {Comamonas te	84.88
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	84.57
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	84.55
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	84.32
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	83.79
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	83.36
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	83.27
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	83.18
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	82.97
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	82.86
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	82.5
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	82.14
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	81.64
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	81.43
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	81.34
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	81.18
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	81.09
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	81.03
d1fl2a2	126	Alkyl hydroperoxide reductase subunit F (AhpF), C-	80.97
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	80.87
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	80.83
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	80.82
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	80.75
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	80.51
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	80.27
d1uaya_	241	Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus t	80.17
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	80.16
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	80.11

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=100.00  E-value=1.2e-42  Score=314.76  Aligned_cols=316  Identities=30%  Similarity=0.561  Sum_probs=263.7

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCC---C------------------
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNE---Q------------------   60 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~---~------------------   60 (342)
                      +++|||||+|+|+..+..|..|++.|++|+++|+++++||.++|+++.++..+++...   .                  
T Consensus         4 P~e~DVII~GTGL~ESILAaAlSr~GkkVLHiD~N~yYGg~~aSl~~~~L~~w~~~~~~~~~~~~~~~~~~~~~~e~e~~   83 (491)
T d1vg0a1           4 PSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFSFSGLLSWLKEYQENNDVVTENSMWQEQILENEEA   83 (491)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHHHTC----------CGGGGCCTTEEE
T ss_pred             CCccCEEEECCChHHHHHHHHHHhcCCEEEEecCCCcCCCcccceeHHHHHHHHHhhhcccccccccccccccccccchh
Confidence            3579999999999999999999999999999999999999999999888754331000   0                  


Q ss_pred             ----------------------------------------------------------------------CC--------
Q 019351           61 ----------------------------------------------------------------------PP--------   62 (342)
Q Consensus        61 ----------------------------------------------------------------------~~--------   62 (342)
                                                                                            .|        
T Consensus        84 ~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~  163 (491)
T d1vg0a1          84 IPLSSKDKTIQHVEVFCYASQDLHKDVEEAGALQKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAEQSQCPG  163 (491)
T ss_dssp             EEBCSSCCCEEEEEEEECSCC-----------------------------------------------------------
T ss_pred             cccccccccccccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence                                                                                  00        


Q ss_pred             --------------------------------------------------CCCCCCCcceeccCcchhccccHHHHHHhh
Q 019351           63 --------------------------------------------------AHLGSSRDYNVDMIPKFIIANGALVRVLIH   92 (342)
Q Consensus        63 --------------------------------------------------~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~   92 (342)
                                                                        ...+.++.|++|+.|+++++.+.++++|+.
T Consensus       164 ~e~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~r~~niDL~Pk~l~a~g~lv~~Li~  243 (491)
T d1vg0a1         164 PESSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIK  243 (491)
T ss_dssp             ---------------------------------------------CCCHHHHHHTGGGCCEESSCCCEESSSHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhhhcccccccccccchheecccHHHHHHHH
Confidence                                                              002446899999999999999999999999


Q ss_pred             cCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccCCCCCcHHHHHH
Q 019351           93 TDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIA  172 (342)
Q Consensus        93 ~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~  172 (342)
                      +++.+|+||+.+++.++|.+|+++++|.++.+.|++.++++++|+.+++|+.++..+... ++.+.  +++..++.+|++
T Consensus       244 S~v~rYlEFk~v~~~~v~~~g~~~~VP~sr~eif~s~~l~l~eKR~lmkFl~~v~~~~~~-~~~~~--~~~~~~~~e~l~  320 (491)
T d1vg0a1         244 SNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMVEKRMLMKFLTFCVEYEEH-PDEYR--AYEGTTFSEYLK  320 (491)
T ss_dssp             HTGGGGCCEEECCEEEEESSSSEEECCCSHHHHHHCSSSCHHHHHHHHHHHHHHHTGGGC-HHHHH--TTTTSBHHHHHT
T ss_pred             cChhhheeEEEeceEEEecCCeEEECCCCHHHHhcCCCCCHHHHHHHHHHHHHHhhccCC-ccccc--cccCCcHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999987642 33322  446899999999


Q ss_pred             HcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHHHHHHHHHHcCcEEEcC
Q 019351          173 KYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQAFARLSAVYGGTYMLN  252 (342)
Q Consensus       173 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~  252 (342)
                      +++++++.++++.+.+++.....   .++..++.++.+|+.|+++| |.+||+||.+|.++++++++|.++..|+.++++
T Consensus       321 ~~~l~~~~~~~i~~aial~~~~~---~~~~~~l~ri~~yl~Slg~y-G~spflyp~YG~gEipQ~FcR~~AV~Gg~Y~L~  396 (491)
T d1vg0a1         321 TQKLTPNLQYFVLHSIAMTSETT---SCTVDGLKATKKFLQCLGRY-GNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLR  396 (491)
T ss_dssp             TSSSCHHHHHHHHHHTTC--CCS---CBHHHHHHHHHHHHHHTTSS-SSSSEEEETTCTTHHHHHHHHHHHHTTCEEESS
T ss_pred             HcCCChHHHHHHHhheeccCCCC---ccHHHHHHHHHHHHHHHHhh-CCCCeEeecCCcchHHHHHHHHHHhcCcEEEcC
Confidence            99999999999999998875443   36788899999999999999 999999999999999999999999999999999


Q ss_pred             CccceEEEc-CCCcEEEEEe-CCcEEEcCEEEECCCCCCccccccceeEEEEEEecCCCCCCCCCCeEEEEecCCCCCCc
Q 019351          253 KPECKVEFD-EEGKVVGVTS-EGETAKCKKVVCDPSYLPNKVRKVGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRR  330 (342)
Q Consensus       253 ~~V~~i~~~-~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~p~~~~~~~  330 (342)
                      ++|.+|..+ +++++.+|.. +|+++.|++||+.++|.|..+  ...+.|. ++...|        +...++|+.+.++.
T Consensus       397 ~~i~~i~~d~e~~~~~~v~~~~g~~i~~k~vI~~psy~p~~~--~~~v~r~-c~~~~~--------s~~~i~~~p~~~~~  465 (491)
T d1vg0a1         397 HSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENT--CSRVSRD-CYNDLP--------SNVYVCSGPDSGLG  465 (491)
T ss_dssp             CCEEEEEEETTTCCEEEEEETTSCEEECSEEEEEGGGBCTTT--TTTCCGG-GSSSCC--------TTEEEECCCCSSSS
T ss_pred             CccceEEEecCCCeEEEEEccCCcEEecCeEEECHHhCCccc--cceeeeh-hhcCCC--------ceEEEECCCCcCCc
Confidence            999999874 3667777776 688999999999999988653  1222221 111111        34588999999888


Q ss_pred             CceEE
Q 019351          331 SDIQK  335 (342)
Q Consensus       331 ~~~~~  335 (342)
                      +++|+
T Consensus       466 ~d~~v  470 (491)
T d1vg0a1         466 NDNAV  470 (491)
T ss_dssp             SHHHH
T ss_pred             cchhh
Confidence            88764

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.1e-38  Score=273.84  Aligned_cols=290  Identities=55%  Similarity=1.003  Sum_probs=233.3

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCC----CCCCCCCcceeccC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPP----AHLGSSRDYNVDMI   76 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~----~~~g~~~~~~~~~~   76 (342)
                      |+++|||||||||++||+||++|+++|++|+|||+++++||+++|++..+....+.......    ...+....|.+++.
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~   81 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLI   81 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCccccccccccccccccceeccC
Confidence            89999999999999999999999999999999999999999999998877655443321110    11233456788899


Q ss_pred             cchhccccHHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCccc
Q 019351           77 PKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKT  156 (342)
Q Consensus        77 ~~~~~~~~~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~  156 (342)
                      |++++..+.+.+.+...+...+.++...++.+.+.++....+|....+.+.........++.+.+|...+..+.......
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (297)
T d2bcgg1          82 PKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKIYKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLST  161 (297)
T ss_dssp             CCBEETTSHHHHHHHHHTGGGTCCEEECCCEEEEETTEEEECCSSHHHHHHCTTSCHHHHHHHHHHHHHHHHCBTTBGGG
T ss_pred             cccccCCCcceeeeeeccccccccccccCcccccccCCccccccchhhhhhccccccccchhhhhhhhhhhhhhhccccc
Confidence            99999998888888888888888888888888888999999998888888888888888888888888877765443333


Q ss_pred             ccccCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCChHHH
Q 019351          157 HEGMDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLGELPQ  236 (342)
Q Consensus       157 ~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~~l~~  236 (342)
                      .....++..++.++++.+++.+..++++...+.......+...+....+.+...+..+...+ +..++.+|+||++.+++
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~gG~~~l~~  240 (297)
T d2bcgg1         162 HQGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARY-GKSPYLYPMYGLGELPQ  240 (297)
T ss_dssp             STTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHHHHHHHH-SSCSEEEETTCTTHHHH
T ss_pred             hhhhcccchhhhhhhhhhccCHHHHHHHHHHHhhhccccccchhhhhhhhhhhhhhhccccc-ccCcceeccCcHHHHHH
Confidence            34445677899999999999998888877666555444444556666666666666665554 56779999999999999


Q ss_pred             HHHHHHHHcCcEEEcCCccceEEEcC-CCcEEEEEeCCcEEEcCEEEECCCCCCcc
Q 019351          237 AFARLSAVYGGTYMLNKPECKVEFDE-EGKVVGVTSEGETAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       237 ~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~~v~~~g~~~~a~~vI~~~~~~~~~  291 (342)
                      +|++.++++|++|++|++|++|..++ ++++.+|+++|++++||+||++++|.|++
T Consensus       241 ~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~ad~VI~~~s~~~~~  296 (297)
T d2bcgg1         241 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEK  296 (297)
T ss_dssp             HHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEECSCEEECGGGCGGG
T ss_pred             HHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEECCEEEEChhhccCC
Confidence            99999999999999999999997652 46677888899999999999999888864

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.2e-21  Score=174.58  Aligned_cols=253  Identities=18%  Similarity=0.208  Sum_probs=139.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcccc-
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG-   84 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-   84 (342)
                      ||||||||++||+||++|+++|++|+|||+++++||+++|....                   ..+.+|++++++.... 
T Consensus         1 DViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~-------------------~g~~~d~G~~~~~~~~~   61 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQ-------------------KVKYVDLGGSYVGPTQN   61 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCT-------------------TTSCEESSCCEECTTCH
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECC-------------------CCcEEeCCceEeCCCCh
Confidence            89999999999999999999999999999999999999987532                   1234556655554333 


Q ss_pred             HHHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhh----cCCCCcccc-cc
Q 019351           85 ALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQD----YDENDPKTH-EG  159 (342)
Q Consensus        85 ~l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~----~~~~~~~~~-~~  159 (342)
                      .+.+++.+.++.... ...........+..........    . .............+...+..    .....+... ..
T Consensus        62 ~~~~l~~~lgl~~~~-~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (383)
T d2v5za1          62 RILRLAKELGLETYK-VNEVERLIHHVKGKSYPFRGPF----P-PVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLA  135 (383)
T ss_dssp             HHHHHHHHTTCCEEE-CCCSSEEEEEETTEEEEECSSS----C-CCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTH
T ss_pred             HHHHHHHHcCCccee-ccCccceEEecCcccccccccc----c-chhhhhhhhhHHHHHHHHHHhhhhcccccccchhhh
Confidence            455555555554321 1111111111233222221110    0 00000111122222222221    111111111 11


Q ss_pred             cCCCCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHh--hccccCCCceEEeCCCCChHHHH
Q 019351          160 MDLTRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAES--IARFQGGSPYIYPLYGLGELPQA  237 (342)
Q Consensus       160 ~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~gG~~~l~~~  237 (342)
                      ..++..++.+++......+..........................+.........  ............+.+|+..++..
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (383)
T d2v5za1         136 EEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTRIISTTNGGQERKFVGGSGQVSER  215 (383)
T ss_dssp             HHHHTSBHHHHHHHHCSSHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHTTTCHHHHHCSTTSTTSEEETTCTHHHHHH
T ss_pred             hhhhhhHHHHHHHHhccchHHHHHHHHhhhhhhccccchhhHHHHHHHHHhhcccccccccccCcceeeeccchhHHHHH
Confidence            1235678889988887776665544332222111111122222222221111000  00111234456778899999888


Q ss_pred             HHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351          238 FARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       238 l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~  287 (342)
                      +++   ..|++|++|++|++|..+ ++++.+.+.+|.++.||+||+|.+.
T Consensus       216 l~~---~~g~~i~~~~~v~~I~~~-~~~v~v~~~~g~~~~ad~vI~a~p~  261 (383)
T d2v5za1         216 IMD---LLGDRVKLERPVIYIDQT-RENVLVETLNHEMYEAKYVISAIPP  261 (383)
T ss_dssp             HHH---HHGGGEEESCCEEEEECS-SSSEEEEETTSCEEEESEEEECSCG
T ss_pred             HHH---HcCCeEEecCcceEEEec-CCeEEEEECCCCEEECCEEEECCCH
Confidence            765   459999999999999887 6666644458889999999999764

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.85  E-value=2.7e-20  Score=162.14  Aligned_cols=247  Identities=13%  Similarity=0.090  Sum_probs=129.3

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhccccH
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGA   85 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~   85 (342)
                      ||+|||||++||+||++|+++|++|+|||+++++||+++|+..++                    +.+|.+++.+....+
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~g--------------------~~~d~G~~~~~~~~~   61 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHALAG--------------------YLVEQGPNSFLDREP   61 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEETT--------------------EEEESSCCCEETTCH
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEeeCC--------------------EEEecCceEEecCCH
Confidence            899999999999999999999999999999999999999887542                    556666666655443


Q ss_pred             H-HHHHhhcCCcceeeEEEcCc--eEEEeCCeEEecCCCcHHHhcCCCCChhhHHHHHHHHHHHhhcCCCCcccccccCC
Q 019351           86 L-VRVLIHTDVTKYLYFKAVDG--SFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDL  162 (342)
Q Consensus        86 l-~~~l~~~~~~~~l~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (342)
                      . .+++.+.++...+.......  ...................+.........   ..   ..........     ....
T Consensus        62 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~-----~~~~  130 (347)
T d2ivda1          62 ATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGA---RL---RVAGELFSRR-----APEG  130 (347)
T ss_dssp             HHHHHHHHTTCGGGEECSCSSCCCEEEEETTEEEECCCSHHHHHTCSSSCHHH---HH---HHHGGGGCCC-----CCTT
T ss_pred             HHHHHHHHhcccccceeccccccceeeeccccccccccchhhhhhhhhccchh---hH---HHHhhhhhhh-----cccc
Confidence            3 33444444444332221111  11222333343333333444443333221   11   1111111000     0011


Q ss_pred             CCCcHHHHHHHcCCChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHH--------------Hh-------hc-cccC
Q 019351          163 TRVTTRELIAKYGLDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYA--------------ES-------IA-RFQG  220 (342)
Q Consensus       163 ~~~s~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--------------~~-------~~-~~~g  220 (342)
                      ...++.+++..............+..................+..+....              ..       .. ....
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (347)
T d2ivda1         131 VDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKL  210 (347)
T ss_dssp             CCCBHHHHHHHHTCHHHHHHTHHHHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----CCSCCC
T ss_pred             ccccHHHHHHhhhhcchhccccchhhhhhhccccchhhHHHHHHHHHHhhhhccchhhhhhhccchhccccccccccccc
Confidence            34556666554422211111111111100001000111111111110000              00       00 0001


Q ss_pred             CCceEEeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC--cEEEcCEEEECCCC
Q 019351          221 GSPYIYPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG--ETAKCKKVVCDPSY  287 (342)
Q Consensus       221 ~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g--~~~~a~~vI~~~~~  287 (342)
                      ...+..+++|+..+++.|++.   .|++|++|++|++|+.+ ++++..+.. ++  +++.||+||+|++.
T Consensus       211 ~~~~~~~~~g~~~~~~~l~~~---~g~~i~~~~~V~~I~~~-~~~~~v~~~~~~~~~~~~ad~VV~a~p~  276 (347)
T d2ivda1         211 SGALSTFDGGLQVLIDALAAS---LGDAAHVGARVEGLARE-DGGWRLIIEEHGRRAELSVAQVVLAAPA  276 (347)
T ss_dssp             CCCEEEETTCTHHHHHHHHHH---HGGGEESSEEEEEEECC---CCEEEEEETTEEEEEECSEEEECSCH
T ss_pred             cCcccccCCchHHHHHHHHHH---hhcccccCCEEEEEEEe-CCeEEEEEEcCCeEEEEECCEEEECCCH
Confidence            234567889999999988764   48999999999999887 555554444 33  46999999999874

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.81  E-value=2.6e-19  Score=158.13  Aligned_cols=247  Identities=17%  Similarity=0.191  Sum_probs=131.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcccc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG   84 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   84 (342)
                      .+|+|||||++||+||++|+++|++|+|||+++++||++.|+....                  ..+.+|.++.++....
T Consensus        31 kkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~------------------~g~~~d~G~~~~~~~~   92 (370)
T d2iida1          31 KHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEE------------------AGWYANLGPMRLPEKH   92 (370)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETT------------------TTEEEESSCCCEETTC
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCC------------------CCceeccCceeecCcc
Confidence            5899999999999999999999999999999999999999876431                  3366677766655544


Q ss_pred             H-HHHHHhhcCCcceeeEEEcCceEEEeCCeEEecCCCc--HHHhcCCCC------Ch--hhHHHHHHHHHHHhhcCCCC
Q 019351           85 A-LVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATD--MEALKSPLM------GI--FEKRRARKFFIYVQDYDEND  153 (342)
Q Consensus        85 ~-l~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~------~~--~~k~~~~~~~~~~~~~~~~~  153 (342)
                      . +.+++.+.++............+.+.++.........  .........      ..  .......++...+.....  
T Consensus        93 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  170 (370)
T d2iida1          93 RIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNC--  170 (370)
T ss_dssp             HHHHHHHHHTTCCEEEECSCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCH--
T ss_pred             HHHHHHHHHhCCccceeeccCCceEEecCCccccchhhhhhhhhhhhhhhhhhhhhhhHHHHHHHHHHHHHHHHhhhh--
Confidence            3 3344444444322111112233344444333221100  000000000      00  000111111111111100  


Q ss_pred             cccccccCCCCCcHHHHHHHcC-CChhHHHHHHhhhhcccCCCCCCCchHHHHHHHHHHHHhhccccCCCceEEeCCCCC
Q 019351          154 PKTHEGMDLTRVTTRELIAKYG-LDDNTIDFIGHALALHRDDRYLNEPALDTVKRMKLYAESIARFQGGSPYIYPLYGLG  232 (342)
Q Consensus       154 ~~~~~~~~~~~~s~~~~l~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~gG~~  232 (342)
                        .......+..+..+++.... ........+........   .............       ..+.....+.++.+|+.
T Consensus       171 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~  238 (370)
T d2iida1         171 --SYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDS---GYYVSFIESLKHD-------DIFAYEKRFDEIVDGMD  238 (370)
T ss_dssp             --HHHHHHHTTSBHHHHHHHTSCCCHHHHHHHHHHTTCGG---GTTSBHHHHHHHH-------HHHTTCCCEEEETTCTT
T ss_pred             --hhhhhhccchhHHHHHHHhccccHHHHHHhhccccccc---hhhhHHHhhhhhh-------hhhccccccccchhhHH
Confidence              00000124456666665543 33333333322111110   0011111111111       01112455678899999


Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE-e---CCcEEEcCEEEECCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-S---EGETAKCKKVVCDPSY  287 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~-~---~g~~~~a~~vI~~~~~  287 (342)
                      .+++.|++   +.|++|+++++|++|..+ ++++.... .   ++++++||+||+|++.
T Consensus       239 ~l~~~l~~---~~g~~i~~~~~V~~I~~~-~~~v~v~~~~~~~~~~~~~aD~VI~A~p~  293 (370)
T d2iida1         239 KLPTAMYR---DIQDKVHFNAQVIKIQQN-DQKVTVVYETLSKETPSVTADYVIVCTTS  293 (370)
T ss_dssp             HHHHHHHH---HTGGGEESSCEEEEEEEC-SSCEEEEEECSSSCCCEEEESEEEECSCH
T ss_pred             HHHHHHHH---hcCCccccCceEEEEEEe-CCeEEEEEEecCCCeEEEEeeEEEecCCH
Confidence            99998865   568999999999999987 66655332 2   4568999999999864

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=99.74  E-value=6.7e-18  Score=145.08  Aligned_cols=58  Identities=9%  Similarity=0.141  Sum_probs=50.8

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ...++..|.+.++++|++++++++|++|+.+ +++ +.|.|+++++.||+||+|+|.|..
T Consensus       149 p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~-~~~-v~V~t~~g~i~a~~VViAaG~~s~  206 (281)
T d2gf3a1         149 SENCIRAYRELAEARGAKVLTHTRVEDFDIS-PDS-VKIETANGSYTADKLIVSMGAWNS  206 (281)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEC-SSC-EEEEETTEEEEEEEEEECCGGGHH
T ss_pred             ccccccccccccccccccccCCcEEEEEEEE-CCE-EEEEECCcEEEcCEEEECCCCcch
Confidence            3688999999999999999999999999987 666 468888789999999999998753

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=99.71  E-value=1.5e-17  Score=142.35  Aligned_cols=65  Identities=14%  Similarity=0.119  Sum_probs=54.3

Q ss_pred             EEeCCC---CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCcc
Q 019351          225 IYPLYG---LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPNK  291 (342)
Q Consensus       225 ~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~  291 (342)
                      +.+..|   ...++..|++.++++|++|+++++|++|+.+  ++++.|+++.++|.||+||+|+|.|...
T Consensus       141 ~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~--~~~~~V~t~~g~i~a~~vV~AaG~~s~~  208 (276)
T d1ryia1         141 FIQDDVHVEPYFVCKAYVKAAKMLGAEIFEHTPVLHVERD--GEALFIKTPSGDVWANHVVVASGVWSGM  208 (276)
T ss_dssp             EETTCCBCCHHHHHHHHHHHHHHTTCEEETTCCCCEEECS--SSSEEEEETTEEEEEEEEEECCGGGTHH
T ss_pred             EeccceeeecccchhHHHHHHHHcCCEEecceEEEeEEee--cceEEEecCCeEEEcCEEEECCCccHHH
Confidence            344555   4578999999999999999999999999865  4457888988899999999999988643

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=99.71  E-value=4e-17  Score=141.86  Aligned_cols=59  Identities=19%  Similarity=0.200  Sum_probs=53.9

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ...++..|.+.+++.|++|+++++|++|..+ ++++++|.|+.++++||+||+|+|.|..
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~-~~~v~~V~T~~g~i~a~~VV~aaG~~s~  205 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQS-GGRVTGVQTADGVIPADIVVSCAGFWGA  205 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTEEEECSEEEECCGGGHH
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEEe-CCEEEEEeccceeEECCEEEEecchhHH
Confidence            4678899999999999999999999999988 8889999998889999999999998854

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.69  E-value=4.8e-16  Score=135.23  Aligned_cols=72  Identities=17%  Similarity=0.183  Sum_probs=56.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcccc-
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG-   84 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-   84 (342)
                      +|+|||||++||+||++|+++|++|+|||+++++||+++|+..++                    +.+|.+++++.... 
T Consensus         3 kV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~g--------------------~~~d~G~~~~~~~~~   62 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDG--------------------LIWDEGANTMTESEG   62 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEEETT--------------------EEEESSCCCBCCCSH
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEeccCC--------------------EEEecCceEEeCCCH
Confidence            699999999999999999999999999999999999999887542                    56677776665544 


Q ss_pred             HHHHHHhhcCCcc
Q 019351           85 ALVRVLIHTDVTK   97 (342)
Q Consensus        85 ~l~~~l~~~~~~~   97 (342)
                      .+.+++.+.++..
T Consensus        63 ~~~~~~~~~~~~~   75 (373)
T d1seza1          63 DVTFLIDSLGLRE   75 (373)
T ss_dssp             HHHHHHHHTTCGG
T ss_pred             HHHHHHHHhCCcc
Confidence            3344444444433

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=99.67  E-value=1.8e-16  Score=133.57  Aligned_cols=57  Identities=19%  Similarity=0.193  Sum_probs=48.7

Q ss_pred             CChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC
Q 019351          231 LGELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (342)
Q Consensus       231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~  288 (342)
                      ...+.+.|.+.+++.|++|+++++|++|..+ ++++..|.+ ++++++||+||+|+|..
T Consensus       109 ~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~g~~i~a~~vI~AtGg~  166 (251)
T d2i0za1         109 AQSVVDALLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQTGEVLETNHVVIAVGGK  166 (251)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEETTCCEEECSCEEECCCCS
T ss_pred             HHHHHHHHHHHHHHcCCcccCCcEEEEEEEE-CCEEEEEEeCCCCeEecCeEEEccCCc
Confidence            3567888999999999999999999999987 777776766 77899999999998743

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=99.64  E-value=1.3e-15  Score=128.57  Aligned_cols=62  Identities=16%  Similarity=0.236  Sum_probs=49.0

Q ss_pred             EeCCCCChHHHHHHHHHHHcCcEEEcCCccceEEEcCCC-cE-EEEEeCCcEEEcCEEEECCCC
Q 019351          226 YPLYGLGELPQAFARLSAVYGGTYMLNKPECKVEFDEEG-KV-VGVTSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       226 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-~~-~~v~~~g~~~~a~~vI~~~~~  287 (342)
                      ++......+.+.|.+.+++.|++|+++++|++|...+++ .+ ..+.+++++++||+||+|+|-
T Consensus       103 ~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VIiAtGG  166 (253)
T d2gqfa1         103 FCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIVATGG  166 (253)
T ss_dssp             EETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEECCCC
T ss_pred             ccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEEEcCCc
Confidence            444456678889999999999999999999999876333 22 345568899999999999873

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.57  E-value=2e-15  Score=131.26  Aligned_cols=96  Identities=16%  Similarity=0.234  Sum_probs=69.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcccc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANG   84 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~   84 (342)
                      -+|+|||||++||+||++|+++|++|+|+|+++++||++.|.....                 ...+..+.+|++++...
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~-----------------~g~~~~~~Gphif~t~~   65 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSE-----------------TNVMVHVYGPHIFHTDN   65 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTT-----------------TCCEEETTSCCCEEESC
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecC-----------------CCceEEecCceeecCcc
Confidence            4799999999999999999999999999999999999998875321                 13456788888887766


Q ss_pred             HHHHHHhhcCCcceeeEEEc-CceEEEeCCeEEecCCC
Q 019351           85 ALVRVLIHTDVTKYLYFKAV-DGSFVYNKGKVHKVPAT  121 (342)
Q Consensus        85 ~l~~~l~~~~~~~~l~~~~~-~~~~~~~~g~~~~~~~~  121 (342)
                      +.+..+...    +.+|... .....+.+|+.+.+|.+
T Consensus        66 ~~v~~~~~~----~~~~~~~~~~~~~~~~g~~~~~P~~   99 (314)
T d2bi7a1          66 ETVWNYVNK----HAEMMPYVNRVKATVNGQVFSLPIN   99 (314)
T ss_dssp             HHHHHHHHT----TSCEEECCCCEEEEETTEEEEESCC
T ss_pred             HHHHHHHHH----hhhhhhhccccceeecceeeccCcc
Confidence            444333222    1233332 22344558999988875

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.55  E-value=9.7e-14  Score=120.26  Aligned_cols=56  Identities=16%  Similarity=0.097  Sum_probs=45.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CCc--EEEcCEEEECCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSY  287 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~---~g~--~~~a~~vI~~~~~  287 (342)
                      ..+...+.+.+++.|++|+++++|+++..++++++.+|..   +++  +|+|+.||+|+|-
T Consensus       145 ~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG  205 (308)
T d1y0pa2         145 AHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGG  205 (308)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccceeEeecCeEEEccCc
Confidence            3578888899999999999999999998875678888875   232  5899999998863

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.55  E-value=1.6e-15  Score=131.01  Aligned_cols=94  Identities=19%  Similarity=0.287  Sum_probs=67.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcce-eccCcchhcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYN-VDMIPKFIIA   82 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~   82 (342)
                      ++||+|||||++||+||++|+++|++|+|+|+++++||++.|....+                    +. .+.+|+++..
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~~~g--------------------~~~~~~G~h~f~t   60 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEG--------------------IQIHKYGAHIFHT   60 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEEETT--------------------EEEETTSCCCEEE
T ss_pred             CccEEEECCcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeCcCC--------------------EEEeecCcEEEEe
Confidence            38999999999999999999999999999999999999999876532                    33 3677887776


Q ss_pred             ccHHHHHHhhcCCcceeeEEEc-CceEEEeCCeEEecCCC
Q 019351           83 NGALVRVLIHTDVTKYLYFKAV-DGSFVYNKGKVHKVPAT  121 (342)
Q Consensus        83 ~~~l~~~l~~~~~~~~l~~~~~-~~~~~~~~g~~~~~~~~  121 (342)
                      ..+.+..+.....    +|... .......+++.+.+|.+
T Consensus        61 ~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~~P~~   96 (298)
T d1i8ta1          61 NDKYIWDYVNDLV----EFNRFTNSPLAIYKDKLFNLPFN   96 (298)
T ss_dssp             SCHHHHHHHHTTS----CBCCCCCCCEEEETTEEEESSBS
T ss_pred             cchHHHHHhhccc----cceeeccccceeeeceeEEeccc
Confidence            6644443332211    11111 22234458999998865

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.50  E-value=8.5e-15  Score=124.64  Aligned_cols=45  Identities=29%  Similarity=0.440  Sum_probs=41.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCCCCCcCcccchH
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSSLNLI   49 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~t~~~~   49 (342)
                      .||+|||||++||+||++|+++|+ +|+||||++++||+++|....
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~~~   46 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNFA   46 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEET
T ss_pred             CCEEEECCcHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEeccC
Confidence            489999999999999999999995 799999999999999988754

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=99.48  E-value=9.9e-14  Score=121.03  Aligned_cols=55  Identities=24%  Similarity=0.221  Sum_probs=45.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CCc--EEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~---~g~--~~~a~~vI~~~~  286 (342)
                      ..+...|.+.+.+.|++|+++++|++|..++++++.+|..   +++  .|.|+.||+|+|
T Consensus       152 ~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~~~i~Ak~VIlAtG  211 (322)
T d1d4ca2         152 AHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAG  211 (322)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEEEEEECSEEEECCC
T ss_pred             HHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccEEEEeCCeEEEcCC
Confidence            4678889999999999999999999998765678887765   232  589999999886

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.8e-14  Score=125.86  Aligned_cols=74  Identities=18%  Similarity=0.283  Sum_probs=58.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcccchHHHHHhccCCCCCCCCCCCCCcceeccCcchhcc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIA   82 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~   82 (342)
                      ++.+|||||||++||+||++|+++|++|+|||+++++||+++|.+.++                    +.+|++.+++..
T Consensus         4 ~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~~~g--------------------~~~d~G~~~i~~   63 (449)
T d2dw4a2           4 KTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFRKGN--------------------YVADLGAMVVTG   63 (449)
T ss_dssp             CCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEEETT--------------------EEEESSCCEECC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEEeCC--------------------EEEECCCEEECC
Confidence            357899999999999999999999999999999999999999987642                    556666665542


Q ss_pred             c--cHHHHHHhhcCCc
Q 019351           83 N--GALVRVLIHTDVT   96 (342)
Q Consensus        83 ~--~~l~~~l~~~~~~   96 (342)
                      .  ..+.+++.+.++.
T Consensus        64 ~~~~~~~~l~~~lgl~   79 (449)
T d2dw4a2          64 LGGNPMAVVSKQVNME   79 (449)
T ss_dssp             SBTCHHHHHHHHHTCC
T ss_pred             CCCcHHHHHHHHcCCc
Confidence            2  2455566655554

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=99.44  E-value=7.5e-13  Score=115.09  Aligned_cols=56  Identities=20%  Similarity=0.194  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe---CCc--EEEcCEEEECCCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS---EGE--TAKCKKVVCDPSYL  288 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~---~g~--~~~a~~vI~~~~~~  288 (342)
                      .++..|.+.+++.|++++++++|+++..++++++.+|..   ++.  .+.|+.||+|+|-+
T Consensus       149 ~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~~i~Ak~VVlAtGG~  209 (317)
T d1qo8a2         149 EIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGY  209 (317)
T ss_dssp             HHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCC
T ss_pred             hhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEEEEeccceEEecccc
Confidence            588899999999999999999999987765788888765   333  47899999988744

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=99.36  E-value=1.8e-12  Score=111.20  Aligned_cols=43  Identities=28%  Similarity=0.264  Sum_probs=40.0

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++++||+|||||++||++|..|.++|.+|+|||+++.+||.+.
T Consensus         5 ~~~~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~   47 (298)
T d1w4xa1           5 PEEVDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWY   47 (298)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHH
T ss_pred             CCCCCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccc
Confidence            3568999999999999999999999999999999999999754

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.29  E-value=3.4e-12  Score=113.20  Aligned_cols=35  Identities=14%  Similarity=0.302  Sum_probs=32.8

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +++||||||+|.+|+++|++|+++|++|+|||++.
T Consensus         6 ~~~dvIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   40 (370)
T d3coxa1           6 DRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGR   40 (370)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            36999999999999999999999999999999953

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=99.27  E-value=5.6e-11  Score=103.74  Aligned_cols=55  Identities=16%  Similarity=0.117  Sum_probs=44.9

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe----CCc--EEEcCEEEECCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS----EGE--TAKCKKVVCDPSY  287 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~  287 (342)
                      ..+...|.+.++..|++|+.++++.++..+ ++++.++..    +|+  ++.|+.||+|+|-
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~-~~~v~g~~~~~~~~g~~~~i~Ak~VvlATGG  218 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVAKGTLIATGG  218 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEECSEEEECCCC
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccc-cccccceeEEeccCCcEEEEecCeEEEeccc
Confidence            357888999999999999999999999887 787776544    453  4889999998763

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.20  E-value=4.2e-11  Score=104.59  Aligned_cols=45  Identities=16%  Similarity=0.215  Sum_probs=40.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCC--CeEEEEcCCCCCCCcCcc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~~~GG~~~t   45 (342)
                      |+..-.|+|||||++||+||..|+++|  .+|+||||++.+||.+..
T Consensus         1 m~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~   47 (335)
T d2gv8a1           1 LPTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   47 (335)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccc
Confidence            776668999999999999999998877  599999999999998753

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.19  E-value=3.1e-11  Score=106.79  Aligned_cols=33  Identities=21%  Similarity=0.386  Sum_probs=31.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +||||||+|.+|+++|++|+++|++|+|||++.
T Consensus         3 v~VIVVGsG~aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1           3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEeCcCHHHHHHHHHHHHCcCeEEEEecCC
Confidence            699999999999999999999999999999954

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=7.2e-12  Score=103.54  Aligned_cols=45  Identities=16%  Similarity=0.328  Sum_probs=42.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      |+++|||+|||||++|++||.+|++.|++|+|+|+++.+||.+..
T Consensus         2 m~~~yDviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~~   46 (233)
T d1v59a1           2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCLN   46 (233)
T ss_dssp             EEEEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHHH
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeEE
Confidence            778899999999999999999999999999999999999998753

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=99.12  E-value=2.6e-10  Score=98.38  Aligned_cols=40  Identities=10%  Similarity=0.067  Sum_probs=36.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~GG~~   43 (342)
                      ++||+|||+|++||+||+.++++  |.+|+|+||....||.+
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~g~s   46 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMRSHT   46 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGGSGG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCCCcH
Confidence            69999999999999999999986  67999999998877764

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=4.4e-10  Score=97.78  Aligned_cols=40  Identities=18%  Similarity=0.195  Sum_probs=37.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      +|||+|||+|++||+||..++++|.+|+|+||.+..||.+
T Consensus         7 ~~DVlVVG~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~s   46 (330)
T d1neka2           7 EFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHT   46 (330)
T ss_dssp             EESCEEECCSHHHHHHHHHHHHTTCCCEEECSSCGGGSGG
T ss_pred             cCCEEEECcCHHHHHHHHHHHHcCCeEEEEeCCCCCCCcH
Confidence            6999999999999999999999999999999998888764

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.04  E-value=2.7e-10  Score=100.34  Aligned_cols=34  Identities=38%  Similarity=0.569  Sum_probs=32.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .||+||||+|.+|+++|.+|+++|++|+|||++.
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae~g~~VlvLEaG~   35 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSEAGKKVLLLERGG   35 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHTTCCEEEECSSC
T ss_pred             cCCEEEECcCHHHHHHHHHHhhCCCeEEEEEccC
Confidence            5999999999999999999999999999999963

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.02  E-value=6.8e-11  Score=96.76  Aligned_cols=43  Identities=21%  Similarity=0.366  Sum_probs=40.5

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      +++|||+|||||++||+||.+|++.|++|+|+|+++.+||.+.
T Consensus         1 ~~~yDvvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~   43 (221)
T d1dxla1           1 SDENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   43 (221)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeee
Confidence            3579999999999999999999999999999999999999875

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.01  E-value=1.2e-10  Score=102.21  Aligned_cols=36  Identities=33%  Similarity=0.588  Sum_probs=32.5

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      ..||+||||||.+|+++|.+|+++ ++|+|||+++..
T Consensus        25 ~~YD~IIVGsG~aG~vlA~rLae~-~kVLvLEaG~~~   60 (351)
T d1ju2a1          25 GSYDYVIVGGGTSGCPLAATLSEK-YKVLVLERGSLP   60 (351)
T ss_dssp             EEEEEEEECCSTTHHHHHHHHTTT-SCEEEECSSBCG
T ss_pred             CCccEEEECccHHHHHHHHHhcCC-CCEEEEecCCCC
Confidence            359999999999999999999987 999999997643

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.01  E-value=8.3e-11  Score=104.26  Aligned_cols=42  Identities=24%  Similarity=0.358  Sum_probs=38.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhh------CCCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSV------DGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~------~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++|||||||||+|||+||+.|++      +|++|+||||+..+|....
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~~   78 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTL   78 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTCC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCcc
Confidence            36999999999999999999997      8999999999999876553

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=99.00  E-value=1.4e-10  Score=97.10  Aligned_cols=44  Identities=25%  Similarity=0.262  Sum_probs=38.3

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |.++.||||||||++||+||++|+++|++|+|+||+...+|.+.
T Consensus         3 ~~~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~~~~~~s~   46 (268)
T d1c0pa1           3 MHSQKRVVVLGSGVIGLSSALILARKGYSVHILARDLPEDVSSQ   46 (268)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSCTTCTTCT
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCCCCCCcch
Confidence            55678999999999999999999999999999999875555443

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.00  E-value=1.2e-10  Score=102.96  Aligned_cols=43  Identities=33%  Similarity=0.520  Sum_probs=39.1

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      |+.+|||||||+|++|+++|.+|+++|++|+|||++...++..
T Consensus         1 md~~yDviIVGsG~aG~v~A~~La~~G~kVlvLEaG~~~~~~~   43 (379)
T d2f5va1           1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLK   43 (379)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             CCCcccEEEECcCHHHHHHHHHHhhCCCeEEEEecCCCCCCcc
Confidence            8999999999999999999999999999999999976655443

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=98.99  E-value=4.3e-09  Score=88.00  Aligned_cols=37  Identities=16%  Similarity=0.125  Sum_probs=34.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      ..+|+|||||++||+||..|+++|++|+||||++.++
T Consensus         4 ~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~   40 (265)
T d2voua1           4 TDRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPL   40 (265)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            4589999999999999999999999999999987654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.99  E-value=1.3e-10  Score=98.71  Aligned_cols=42  Identities=24%  Similarity=0.260  Sum_probs=38.9

Q ss_pred             cccEEEECCCchHHHHHHhhhh-CCCeEEEEcCCCCCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSV-DGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~-~G~~V~vlE~~~~~GG~~~t   45 (342)
                      ++||+|||||++||+||++|++ .|++|+|+|+++.+||.+++
T Consensus        33 e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          33 ETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            6899999999999999999987 59999999999999998763

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=2e-10  Score=90.01  Aligned_cols=41  Identities=20%  Similarity=0.280  Sum_probs=38.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ..+|+|||||++||+||+.|+++|++|+|||+.+.+||...
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~   83 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN   83 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEE
Confidence            46899999999999999999999999999999999999764

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.94  E-value=1.5e-10  Score=95.26  Aligned_cols=42  Identities=36%  Similarity=0.462  Sum_probs=39.5

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .+|||+|||||++||+||.+|+++|++|+|+|+++.+||.+.
T Consensus         5 ~dyDviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~   46 (229)
T d1ojta1           5 AEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (229)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             CccCEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            369999999999999999999999999999999999999764

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.93  E-value=3e-10  Score=93.16  Aligned_cols=43  Identities=23%  Similarity=0.366  Sum_probs=38.6

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      +++|||+|||||++||+||.+|+++|++|+|+|+....++...
T Consensus         1 ~~kYDviIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~~~   43 (229)
T d3lada1           1 SQKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA   43 (229)
T ss_dssp             CCCCSEEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSSBC
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcccc
Confidence            3689999999999999999999999999999999877766543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.89  E-value=1.4e-08  Score=73.63  Aligned_cols=45  Identities=11%  Similarity=0.131  Sum_probs=35.3

Q ss_pred             HHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCC
Q 019351          241 LSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (342)
Q Consensus       241 ~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~  286 (342)
                      .++++|+++++++.|++|..++++.+ .++. +|+++.+|.||+|+|
T Consensus        71 ~l~~~GV~~~~~~~v~~i~~~~~~~~-~v~~~~g~~~~~D~vi~a~G  116 (116)
T d1gesa2          71 VMNAEGPQLHTNAIPKAVVKNTDGSL-TLELEDGRSETVDCLIWAIG  116 (116)
T ss_dssp             HHHHHSCEEECSCCEEEEEECTTSCE-EEEETTSCEEEESEEEECSC
T ss_pred             HHHHCCCEEEeCCEEEEEEEcCCcEE-EEEECCCCEEEcCEEEEecC
Confidence            33456999999999999987634444 4554 788999999999986

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.86  E-value=4.6e-10  Score=91.49  Aligned_cols=41  Identities=22%  Similarity=0.319  Sum_probs=37.3

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++|||+|||||.+|++||.+|++.|++|+|+|++ .+||.|.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~~G~kV~iiE~~-~~GGtc~   41 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAMYGQKCALIEAK-ELGGTCV   41 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTTCCEEEEESS-CTTHHHH
T ss_pred             CcCCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CcCCeEe
Confidence            3699999999999999999999999999999995 5888664

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=2.2e-09  Score=88.45  Aligned_cols=40  Identities=18%  Similarity=0.143  Sum_probs=36.1

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      +|||+|||||++|++||.++++.|++|+|+|+.+..|...
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~~~~   42 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPLGT   42 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCTTCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCccc
Confidence            6999999999999999999999999999999987755443

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.78  E-value=9.8e-10  Score=90.66  Aligned_cols=41  Identities=15%  Similarity=0.143  Sum_probs=37.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-------CeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-------LKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-------~~V~vlE~~~~~GG~~~   44 (342)
                      .++|+|||||+|||+||++|+++|       ++|+|+|+.+.+||.++
T Consensus         2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~   49 (239)
T d1lqta2           2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   49 (239)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence            368999999999999999999998       48999999999999764

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=98.77  E-value=9.5e-08  Score=70.92  Aligned_cols=44  Identities=18%  Similarity=0.232  Sum_probs=35.7

Q ss_pred             HHcCcEEEcCCccceEEEcC-CCcEEEEEe-CCcEEEcCEEEECCC
Q 019351          243 AVYGGTYMLNKPECKVEFDE-EGKVVGVTS-EGETAKCKKVVCDPS  286 (342)
Q Consensus       243 ~~~G~~i~~~~~V~~i~~~~-~~~~~~v~~-~g~~~~a~~vI~~~~  286 (342)
                      +++|+++++++.|++|+... ++++..+.+ +|.++.||.||+|+|
T Consensus        88 ~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G  133 (133)
T d1q1ra2          88 REAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG  133 (133)
T ss_dssp             HHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred             cccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence            45699999999999998752 455666666 778899999999986

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=2.1e-09  Score=92.22  Aligned_cols=41  Identities=20%  Similarity=0.320  Sum_probs=34.9

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++|||+|||+|++||+||+.+++.| +|+||||.+..||.+.
T Consensus         6 ~~~DVvVVG~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~s~   46 (305)
T d1chua2           6 HSCDVLIIGSGAAGLSLALRLADQH-QVIVLSKGPVTEGSTF   46 (305)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTTTS-CEEEECSSCTTC----
T ss_pred             ccCCEEEECccHHHHHHHHHhhcCC-CEEEEECCCCCCCchH
Confidence            3699999999999999999999988 9999999998888653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=2.6e-09  Score=84.45  Aligned_cols=38  Identities=24%  Similarity=0.478  Sum_probs=35.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      |||+|||||.+|++||.+|++.|++|+|+|++  +||.+.
T Consensus         2 yDViIIGgGpaGl~AAi~aar~G~~v~iie~~--~gg~~~   39 (184)
T d1fl2a1           2 YDVLIVGSGPAGAAAAIYSARKGIRTGLMGER--FGGQIL   39 (184)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCEEEECSS--TTGGGG
T ss_pred             CcEEEECcCHHHHHHHHHHHHcCCeEEEEEEe--cCCccc
Confidence            89999999999999999999999999999975  677665

>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.75  E-value=5.8e-09  Score=69.72  Aligned_cols=47  Identities=51%  Similarity=0.749  Sum_probs=43.5

Q ss_pred             cceeEEEEEEecCCCCCCCCCCeEEEEecCCCCCCcCceEEeeCccc
Q 019351          295 VGRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQKPNGSFV  341 (342)
Q Consensus       295 ~~~~~~~~~i~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  341 (342)
                      .+++.|+++++++|+++|+|+++.+.++|++|.||+||||+.-.|+.
T Consensus         3 ~G~ViRaICIl~hPIpnt~~a~S~QIIiPq~Qv~Rk~DIYv~~~S~~   49 (97)
T d1d5ta2           3 AGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYA   49 (97)
T ss_dssp             EEEEEEEEEEESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEEGG
T ss_pred             ccEEEEEEEEecCCcCCCCCCccEEEEeehHHhccCCCEEEEEeccc
Confidence            46789999999999999999999999999999999999999887763

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.73  E-value=3.6e-09  Score=84.45  Aligned_cols=40  Identities=23%  Similarity=0.449  Sum_probs=37.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~   44 (342)
                      -+|+|||||++||+||.+|+++|+ +|+|+|+++.+||..+
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~   45 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLST   45 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHH
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhh
Confidence            479999999999999999999998 5999999999999764

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=98.71  E-value=5.2e-09  Score=86.11  Aligned_cols=42  Identities=21%  Similarity=0.339  Sum_probs=39.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCcc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSS   45 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t   45 (342)
                      ..+|+|||||++||+||..|+++|++|+|+|+++.+||....
T Consensus        49 ~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~   90 (233)
T d1djqa3          49 KDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ   90 (233)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             CceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccc
Confidence            479999999999999999999999999999999999998753

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=3.6e-09  Score=91.05  Aligned_cols=43  Identities=26%  Similarity=0.254  Sum_probs=39.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCCCcCccc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESSSL   46 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~t~   46 (342)
                      ++||+|||||++||+||++|+++  |++|+|+|+++.+||.++..
T Consensus        50 ~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g   94 (311)
T d2gjca1          50 VSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG   94 (311)
T ss_dssp             EESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEec
Confidence            58999999999999999999964  99999999999999988643

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.69  E-value=4.6e-09  Score=86.20  Aligned_cols=40  Identities=15%  Similarity=0.027  Sum_probs=36.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhC--CCeEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVD--GLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~--G~~V~vlE~~~~~GG~~~   44 (342)
                      .+|+|||||+|||+||.+|+++  |++|+|||+.+.+||...
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~   43 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVR   43 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceeh
Confidence            4799999999999999999876  689999999999999764

>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.69  E-value=1.1e-08  Score=68.34  Aligned_cols=45  Identities=53%  Similarity=0.807  Sum_probs=42.0

Q ss_pred             eeEEEEEEecCCCCCCCCCCeEEEEecCCCCCCcCceEEeeCccc
Q 019351          297 RVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQKPNGSFV  341 (342)
Q Consensus       297 ~~~~~~~i~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  341 (342)
                      ++.|+++++++|+++|+|+++.+.++|++|.+|+||||+.-.|+.
T Consensus         6 kViRaICIl~hPipnt~~a~S~QIIiPq~Qv~Rk~DIYv~~~S~~   50 (98)
T d2bcgg3           6 RVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDA   50 (98)
T ss_dssp             EEEEEEEEESSCCTTSTTCSSEEEEECGGGTTCSSCEEEEEEEGG
T ss_pred             eEEEEEEEecCCcCCCCCCceEEEEEehHHhCCCcCEEEEEeccc
Confidence            489999999999999999999999999999999999999887763

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.65  E-value=7.6e-09  Score=86.61  Aligned_cols=42  Identities=33%  Similarity=0.494  Sum_probs=39.8

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      .+||++|||||.+|+.+|..|++.|.+|+|+|+.+.+||.|.
T Consensus        41 k~yDvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c~   82 (261)
T d1mo9a1          41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSCP   82 (261)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHHH
T ss_pred             ccCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCccccccc
Confidence            479999999999999999999999999999999999999874

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.64  E-value=5.8e-09  Score=87.22  Aligned_cols=39  Identities=26%  Similarity=0.402  Sum_probs=36.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      ||++|||||.+|++||.++++.|++|+|+|+. .+||.|.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~~G~~V~liE~~-~~GGtc~   40 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKS-RLGGTCV   40 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-STTHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecC-CCCCeEE
Confidence            89999999999999999999999999999985 5888764

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=98.64  E-value=9.1e-09  Score=83.19  Aligned_cols=39  Identities=18%  Similarity=0.252  Sum_probs=34.4

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC-CCCCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRND-YYGGE   42 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~-~~GG~   42 (342)
                      .|||||||||+||+.||+++++.|.+++++|++- .+|+.
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR~G~ktllit~~~~~ig~~   41 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQKGVRVGLLTQSLDAVMMP   41 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCGGGTTCC
T ss_pred             CCcEEEECcCHHHHHHHHHHHHCCCcEEEEEeccchhccc
Confidence            4999999999999999999999999999999873 34443

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.64  E-value=9.8e-09  Score=86.55  Aligned_cols=41  Identities=17%  Similarity=0.243  Sum_probs=36.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCCCCCcCcc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDYYGGESSS   45 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~~GG~~~t   45 (342)
                      +||+|||||++||++|+.|+++|. +|+|+|+++.++.....
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~g~~   43 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPLGVG   43 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCCSCE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCCceE
Confidence            699999999999999999999995 99999999877654443

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.64  E-value=7e-09  Score=88.18  Aligned_cols=35  Identities=23%  Similarity=0.431  Sum_probs=32.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ++||+|||||++||++|..|+++|++|+|+||++.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            56999999999999999999999999999999864

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=98.64  E-value=4.9e-09  Score=85.41  Aligned_cols=40  Identities=13%  Similarity=0.246  Sum_probs=36.6

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      +||++|||||.+|++||.++++.|++|+|+|++ .+||.|.
T Consensus         5 ~~DlvVIG~GpaGl~aA~~aa~~G~~V~liE~~-~~GG~c~   44 (220)
T d1lvla1           5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGTCL   44 (220)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHTCCEEEECSS-CTTHHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCcEEEEecC-CCCCccc
Confidence            699999999999999999999999999999986 5787664

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.64  E-value=9.9e-09  Score=89.81  Aligned_cols=41  Identities=22%  Similarity=0.374  Sum_probs=36.5

Q ss_pred             cccEEEECCCchHHHHHHhhhh----CCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSV----DGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~----~G~~V~vlE~~~~~GG~~~   44 (342)
                      ++||+|||+|++||+||+.|++    +|++|+|+||++..||.+.
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~s~   65 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSGAV   65 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCSTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCChhH
Confidence            5899999999999999999975    7999999999988877653

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.63  E-value=8.7e-09  Score=83.87  Aligned_cols=40  Identities=23%  Similarity=0.328  Sum_probs=35.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCc
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESS   44 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~   44 (342)
                      +|||+|||||.+|++||.++++.|++|+|+|+.. +||.+.
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar~G~kV~vIEk~~-~GG~~~   42 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGN-LGGVCL   42 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESSC-TTHHHH
T ss_pred             cCCEEEECCCHHHHHHHHHHHHCCCEEEEEecCC-CCccee
Confidence            6999999999999999999999999999999965 566543

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=7.8e-09  Score=82.15  Aligned_cols=44  Identities=11%  Similarity=0.169  Sum_probs=37.8

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcCccc
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSL   46 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~   46 (342)
                      ++.||+|||||.+||+||.+|++.|.+|+|+|+.+..|....+.
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~   47 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTT   47 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccc
Confidence            35799999999999999999999999999999887766555443

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=98.62  E-value=6.6e-09  Score=90.73  Aligned_cols=38  Identities=26%  Similarity=0.337  Sum_probs=34.0

Q ss_pred             CcccEEEECCCchHHHHHHhhh-----hCCCeEEEEcCCCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLS-----VDGLKVLHMDRNDYYG   40 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~-----~~G~~V~vlE~~~~~G   40 (342)
                      ..|||+|||||++||++|..|+     ++|++|+|||+++.+.
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~   48 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKV   48 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCC
Confidence            4599999999999999999996     5799999999987654

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.1e-08  Score=83.13  Aligned_cols=39  Identities=21%  Similarity=0.323  Sum_probs=35.0

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      .|||+|||||.+|++||.+|++.|++|+|+|+. .+||.+
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar~G~kV~vIEk~-~~GG~c   41 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAELGARAAVVESH-KLGGTC   41 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             ccCEEEECCCHHHHHHHHHHHHCCCEEEEEecc-CCCCcc
Confidence            499999999999999999999999999999985 556654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.59  E-value=4.9e-07  Score=65.55  Aligned_cols=32  Identities=19%  Similarity=0.199  Sum_probs=30.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -+++|||||..|+-.|..|++.|.+|+++|++
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~~   54 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWARLGAEVTVLEAM   54 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CeEEEECCChHHHHHHHHHHHcCCceEEEEee
Confidence            46999999999999999999999999999985

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=98.54  E-value=2.2e-08  Score=82.27  Aligned_cols=36  Identities=17%  Similarity=0.117  Sum_probs=32.1

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~   38 (342)
                      ++|||+|||||++|++||.++++.|. +|+|+|+...
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            57999999999999999999999985 7999998643

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=98.52  E-value=1.7e-08  Score=83.20  Aligned_cols=39  Identities=21%  Similarity=0.215  Sum_probs=34.4

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCCCC
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDYYG   40 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~~G   40 (342)
                      +++|||+|||||++|++||.++++.| .+|+|+|+....+
T Consensus         1 ~k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~~~   40 (240)
T d1feca1           1 SRAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHG   40 (240)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSSSB
T ss_pred             CCccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEeccCC
Confidence            35799999999999999999999998 5699999987643

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.50  E-value=2.9e-08  Score=78.90  Aligned_cols=37  Identities=14%  Similarity=0.071  Sum_probs=33.8

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      +.+||+|||||.+||+||.+|+++|.+|+|+|+....
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             ccceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            3589999999999999999999999999999987654

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=98.46  E-value=1.2e-06  Score=63.70  Aligned_cols=32  Identities=16%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -.|+|||||..|+-.|..|++.|.+|+++|++
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~   54 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNATGRRTVMLVRT   54 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcchhheEeecc
Confidence            47999999999999999999999999999985

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=98.41  E-value=7.4e-08  Score=85.17  Aligned_cols=35  Identities=26%  Similarity=0.438  Sum_probs=32.2

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~   38 (342)
                      .||+||||||.+|+++|.+|+++| ++|+|||++..
T Consensus        17 tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~   52 (385)
T d1cf3a1          17 TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSY   52 (385)
T ss_dssp             EEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCC
T ss_pred             eEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCC
Confidence            499999999999999999999987 89999999743

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=98.40  E-value=7.4e-08  Score=85.31  Aligned_cols=35  Identities=31%  Similarity=0.562  Sum_probs=32.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~~   38 (342)
                      .||+||||||.+|+++|.+|+++| .+|+|||++..
T Consensus        24 tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~   59 (391)
T d1gpea1          24 TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFY   59 (391)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCC
T ss_pred             eeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCC
Confidence            599999999999999999999998 79999999754

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.19  E-value=4.9e-08  Score=80.27  Aligned_cols=34  Identities=21%  Similarity=0.170  Sum_probs=30.0

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      +|+|||||++||++|++|+++|++|+|+|+...+
T Consensus         2 kV~VIGaGi~GlstA~~L~~~G~~v~v~e~~~i~   35 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHERYHSVLQPLDVKVY   35 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHTTTSSSCEEEEE
T ss_pred             EEEEECchHHHHHHHHHHHHCCCCceEEeeeeec
Confidence            5999999999999999999999988888775443

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.08  E-value=5.5e-07  Score=73.59  Aligned_cols=39  Identities=18%  Similarity=0.249  Sum_probs=32.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC---CeEEEEcCCCCCCCcCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG---LKVLHMDRNDYYGGESS   44 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G---~~V~vlE~~~~~GG~~~   44 (342)
                      ++|+|||||++|++||.++++.|   ++|+++|+. .+||.|.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~-~~GG~cl   43 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD-GIGGAAV   43 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS-CTTHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC-CCCceee
Confidence            58999999999999999888765   689999984 6787654

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.05  E-value=2.3e-06  Score=61.73  Aligned_cols=36  Identities=19%  Similarity=0.153  Sum_probs=33.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+++|||||..|+-+|..|++.|.+|+++|+++++.
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il   58 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSS
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceec
Confidence            479999999999999999999999999999998765

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.95  E-value=4.2e-06  Score=60.83  Aligned_cols=36  Identities=25%  Similarity=0.238  Sum_probs=33.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+|+|||||..|+-+|..|++.|.+|+++|+.+++-
T Consensus        31 k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l   66 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPL   66 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTT
T ss_pred             CEEEEECChHHHHHHHHHhhccceEEEEEEecCccc
Confidence            379999999999999999999999999999987653

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.94  E-value=5.9e-06  Score=59.76  Aligned_cols=38  Identities=13%  Similarity=0.218  Sum_probs=34.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      -+++|||||..|+-+|..|+++|.+|+++|+++++-.+
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~~l~~   68 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATARTAGVHVSLVETQPRLMSR   68 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTTT
T ss_pred             CeEEEECcchhHHHHHHHhhcccceEEEEeeccccccc
Confidence            47999999999999999999999999999998876443

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.93  E-value=4.2e-06  Score=60.15  Aligned_cols=35  Identities=14%  Similarity=0.248  Sum_probs=32.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -.|+|||||..|+-+|..|++.|.+|+++|+++++
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRI   57 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSS
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhccc
Confidence            36999999999999999999999999999997655

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.93  E-value=4e-06  Score=60.13  Aligned_cols=36  Identities=17%  Similarity=0.119  Sum_probs=33.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+++|||||..|+-+|..|++.|.+|+++|+.+++.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            379999999999999999999999999999998775

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.91  E-value=4.1e-06  Score=60.80  Aligned_cols=36  Identities=25%  Similarity=0.391  Sum_probs=33.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+++|||||..|+-+|..|++.|++|+++|+++++.
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~l~   68 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGAMFL   68 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHHTTCEEEEECSSSCCT
T ss_pred             CcEEEECCcHHHHHHHHHhhcccceEEEEecccccc
Confidence            369999999999999999999999999999987663

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.81  E-value=9.1e-06  Score=58.85  Aligned_cols=36  Identities=19%  Similarity=0.253  Sum_probs=32.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -.++|||||..|+-+|..|++.|.+|+|+|+++++-
T Consensus        24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~~~~l   59 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQPQIG   59 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSS
T ss_pred             CeEEEECCCchHHHHHHHHHhhCcceeEEEeccccc
Confidence            379999999999999999999999999999986653

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=1e-05  Score=58.88  Aligned_cols=35  Identities=29%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      -+++|||||..|+-+|..|++.|.+|+++|+++++
T Consensus        23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRHDKV   57 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSS
T ss_pred             CEEEEEcCCccHHHHHHHHhcCCcEEEEEeecccc
Confidence            37999999999999999999999999999997654

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=97.71  E-value=9.8e-06  Score=62.76  Aligned_cols=38  Identities=18%  Similarity=0.279  Sum_probs=33.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCCCCCCcC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYYGGES   43 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~~~GG~~   43 (342)
                      +|+|||||.+|+.+|.+|.+.|  .+|+++|+++.+....
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~   43 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCY   43 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECST
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcccccc
Confidence            7999999999999999999988  5899999998765544

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.68  E-value=1.2e-05  Score=58.30  Aligned_cols=34  Identities=15%  Similarity=0.211  Sum_probs=31.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      .++|||||..||-.|..|++.|.+|+|+|+++++
T Consensus        27 ~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~~~~   60 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGRIGSEVTVVEFASEI   60 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHHHTCEEEEECSSSSS
T ss_pred             eEEEEccchHHHHHHHHHHhcCCeEEEEEEcccc
Confidence            6999999999999999999999999999997655

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=1.7e-05  Score=54.29  Aligned_cols=34  Identities=21%  Similarity=0.290  Sum_probs=31.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~   39 (342)
                      .|+|+|.|.+|+++|.+|+++|.+|+++|.+...
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~   40 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTP   40 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSC
T ss_pred             EEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCc
Confidence            6999999999999999999999999999987553

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.66  E-value=7.4e-05  Score=53.40  Aligned_cols=53  Identities=17%  Similarity=0.125  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCC
Q 019351          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS  286 (342)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~  286 (342)
                      +.+.+.+..+++|+++++++.|++|..++++....+..+|+++.||.||+|+|
T Consensus        64 ~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G  116 (117)
T d1feca2          64 LRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEADYDVVMLAIG  116 (117)
T ss_dssp             HHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred             hhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence            34455677788899999999999998763454333444889999999999986

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=97.56  E-value=3.3e-05  Score=55.96  Aligned_cols=37  Identities=14%  Similarity=0.151  Sum_probs=33.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -.++|||||..|+=+|..|++.|.+|+++|+.+++-.
T Consensus        27 ~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~~~il~   63 (125)
T d1ojta2          27 GKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMMDGLMQ   63 (125)
T ss_dssp             SEEEEESCSHHHHHHHHHHHHHTCEEEEECSSSSSST
T ss_pred             CeEEEECCCHHHHHHHHHhhcCCCEEEEEEeeccccc
Confidence            3699999999999999999999999999999876654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=4.5e-05  Score=55.03  Aligned_cols=32  Identities=28%  Similarity=0.320  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -.++|||||..|+-.|..|++.|.+|+|+++.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence            36999999999999999999999999999975

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.00012  Score=53.89  Aligned_cols=52  Identities=17%  Similarity=0.154  Sum_probs=43.0

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPS  286 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~  286 (342)
                      .+...+.+.++++|+++++++.|++|..+ ++++. +++ +|+++.||.||.|+|
T Consensus        84 ~~~~~~~~~l~~~GV~~~~~~~V~~i~~~-~~~~~-v~l~~G~~i~aD~Vi~A~G  136 (137)
T d1m6ia2          84 YLSNWTMEKVRREGVKVMPNAIVQSVGVS-SGKLL-IKLKDGRKVETDHIVAAVG  136 (137)
T ss_dssp             HHHHHHHHHHHTTTCEEECSCCEEEEEEE-TTEEE-EEETTSCEEEESEEEECCC
T ss_pred             HHHHHHHHHHHhCCcEEEeCCEEEEEEec-CCEEE-EEECCCCEEECCEEEEeec
Confidence            45566778888999999999999999876 66554 554 888999999999987

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.40  E-value=6.1e-05  Score=57.38  Aligned_cols=32  Identities=25%  Similarity=0.358  Sum_probs=28.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      +|+|||||.+|+-+|..|++ +.+|+|+|+++.
T Consensus         2 rVvIIGgG~~G~e~A~~l~~-~~~Vtvv~~~~~   33 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ-TYEVTVIDKEPV   33 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TSEEEEECSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHc-CCCEEEEecccc
Confidence            69999999999999999975 779999998653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=97.38  E-value=4.1e-05  Score=59.32  Aligned_cols=37  Identities=22%  Similarity=0.078  Sum_probs=32.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -||+|||||.+|+-+|..|++.|.+|+|++..+....
T Consensus         4 ~~VvIIGgG~~G~e~A~~l~~~g~~v~v~~~~~~~~~   40 (185)
T d1q1ra1           4 DNVVIVGTGLAGVEVAFGLRASGWEGNIRLVGDATVI   40 (185)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCCSC
T ss_pred             CCEEEECCcHHHHHHHHHHHHcCCceEEEEecCcccc
Confidence            3899999999999999999999999888887765543

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.37  E-value=6.8e-05  Score=57.78  Aligned_cols=33  Identities=27%  Similarity=0.318  Sum_probs=30.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      .|+|||+|..|..+|.+|+++|++|+|+|++..
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~   36 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLE   36 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTTTCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCEEEEEECChH
Confidence            699999999999999999999999999999643

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.35  E-value=0.00031  Score=49.95  Aligned_cols=51  Identities=20%  Similarity=0.267  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECC
Q 019351          234 LPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDP  285 (342)
Q Consensus       234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~  285 (342)
                      +.+.+.+..+++|+++++++.|++|+.++++... +++ +|+++.||.||.|.
T Consensus        66 ~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~-v~~~~G~~i~~D~Vi~AI  117 (117)
T d1aoga2          66 LREELTKQLTANGIQILTKENPAKVELNADGSKS-VTFESGKKMDFDLVMMAI  117 (117)
T ss_dssp             HHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEE-EEETTSCEEEESEEEECS
T ss_pred             HHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEE-EEECCCcEEEeCEEEEeC
Confidence            4455667778889999999999999876355544 555 78899999999873

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=97.35  E-value=6.4e-05  Score=59.11  Aligned_cols=34  Identities=21%  Similarity=0.205  Sum_probs=30.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRNDYY   39 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~~~   39 (342)
                      +|+|||||.+|+.+|..|++.+  .+|+++|+++.+
T Consensus         2 KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           2 KVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            6999999999999999999875  689999997654

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=97.28  E-value=9.8e-05  Score=57.16  Aligned_cols=31  Identities=29%  Similarity=0.395  Sum_probs=29.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .|+|||+|..|+..|..|+++|++|.++++.
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~   33 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDID   33 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECC
Confidence            6999999999999999999999999999985

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=9.5e-05  Score=58.92  Aligned_cols=38  Identities=11%  Similarity=0.183  Sum_probs=32.7

Q ss_pred             CCcccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCCCC
Q 019351            2 DEEYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRNDYY   39 (342)
Q Consensus         2 ~~~~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~~~   39 (342)
                      +++++++|||||.+|+.+|..|.+.|.  +|+++++.+++
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            356899999999999999999998874  69999887554

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.20  E-value=0.00015  Score=51.73  Aligned_cols=36  Identities=17%  Similarity=0.257  Sum_probs=30.0

Q ss_pred             ccEEEECCCchHHHHHHhhhh---CCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSV---DGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~---~G~~V~vlE~~~~~G   40 (342)
                      -.++|||||..|+-+|..|+.   +|.+|+++|+.+++-
T Consensus        21 ~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL   59 (117)
T d1aoga2          21 RRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL   59 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh
Confidence            379999999999999976664   456899999987763

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=97.19  E-value=6.3e-05  Score=58.34  Aligned_cols=33  Identities=30%  Similarity=0.342  Sum_probs=28.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -+|+|||||.+|+.+|..|.+.|.+|.|++..+
T Consensus         4 a~VvIIGgG~~G~e~A~~l~~~g~~v~i~~~~~   36 (183)
T d1d7ya1           4 APVVVLGAGLASVSFVAELRQAGYQGLITVVGD   36 (183)
T ss_dssp             SSEEEECCSHHHHHHHHHHHHHTCCSCEEEEES
T ss_pred             CCEEEECccHHHHHHHHHHHhcCCceEEEEEec
Confidence            469999999999999999999998877776543

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.0002  Score=54.40  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      +|+|||+|..|...|..|+++|++|+++.+.+.
T Consensus         2 kI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~   34 (167)
T d1ks9a2           2 KITVLGCGALGQLWLTALCKQGHEVQGWLRVPQ   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred             EEEEECcCHHHHHHHHHHHHCCCceEEEEcCHH
Confidence            699999999999999999999999999998654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.08  E-value=0.0002  Score=50.97  Aligned_cols=36  Identities=19%  Similarity=0.243  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhh---hCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLS---VDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~---~~G~~V~vlE~~~~~G   40 (342)
                      -.++|||||..|+-+|..|+   +.|.+|+++|+.+++.
T Consensus        19 ~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il   57 (117)
T d1feca2          19 KRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL   57 (117)
T ss_dssp             SEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS
T ss_pred             CeEEEECCChHHHHHHHHhHhhcccccccceeccccccc
Confidence            47999999999999997655   4589999999987765

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00035  Score=51.22  Aligned_cols=39  Identities=18%  Similarity=0.220  Sum_probs=33.2

Q ss_pred             ccEEEECCCchHHHHHHhhhh----CCCeEEEEcCCCCCCCcC
Q 019351            5 YDVIVLGTGLKECILSGLLSV----DGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~----~G~~V~vlE~~~~~GG~~   43 (342)
                      -.++|||||..|+-+|..|++    .|.+|+++|+++++-++.
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l~~~   80 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMGKI   80 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTTTT
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCCccc
Confidence            369999999999999998863    589999999998876544

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.94  E-value=0.00043  Score=51.90  Aligned_cols=38  Identities=18%  Similarity=0.105  Sum_probs=32.7

Q ss_pred             cEEEE--CCCchHHHHHHhhhhCCCeEEEEcCCCCCCCcC
Q 019351            6 DVIVL--GTGLKECILSGLLSVDGLKVLHMDRNDYYGGES   43 (342)
Q Consensus         6 DViIi--G~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~~   43 (342)
                      .|+|+  |||..|+.+|..|+++|.+|+++|+.++++-..
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~~G~~Vtlv~~~~~~~~~~   80 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLATAGHEVTIVSGVHLANYMH   80 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHHTTCEEEEEESSCTTTHHH
T ss_pred             ceEEEecCCChHHHHHHHHHHHcCCeEEEEecCCcccccc
Confidence            45555  999999999999999999999999988776443

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.90  E-value=0.00083  Score=48.11  Aligned_cols=51  Identities=18%  Similarity=0.142  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDP  285 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~  285 (342)
                      .+...+.+..++.|+++++++.|++|+.+  +++..+.++|+++.||.||+|.
T Consensus        73 ~~~~~~~~~l~~~gv~~~~~~~v~~i~~~--~~~~~v~~dg~~i~~D~vi~aI  123 (123)
T d1nhpa2          73 EFTDVLTEEMEANNITIATGETVERYEGD--GRVQKVVTDKNAYDADLVVVAV  123 (123)
T ss_dssp             HHHHHHHHHHHTTTEEEEESCCEEEEECS--SBCCEEEESSCEEECSEEEECS
T ss_pred             hhHHHHHHHhhcCCeEEEeCceEEEEEcC--CCEEEEEeCCCEEECCEEEEEC
Confidence            45667778888889999999999999754  5566677899999999999873

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.90  E-value=0.00039  Score=54.69  Aligned_cols=31  Identities=26%  Similarity=0.492  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|+|||.|..|+++|..|+++|++|+.+|.+
T Consensus         2 kI~ViGlG~vGl~~a~~la~~g~~V~g~D~n   32 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLSARGHEVIGVDVS   32 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEECCCHhHHHHHHHHHhCCCcEEEEeCC
Confidence            5999999999999999999999999999986

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=96.85  E-value=0.00047  Score=51.71  Aligned_cols=33  Identities=24%  Similarity=0.245  Sum_probs=30.9

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..+|+|||+|.+|+.||..+...|.+|.++|.+
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~   64 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGLGAQVQIFDIN   64 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CcEEEEECCChHHHHHHHHHhhCCCEEEEEeCc
Confidence            368999999999999999999999999999985

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.83  E-value=0.00057  Score=53.21  Aligned_cols=33  Identities=24%  Similarity=0.415  Sum_probs=30.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|||+|..|...|+.++.+|++|+++|..+
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            379999999999999999999999999999864

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.81  E-value=0.0023  Score=45.27  Aligned_cols=54  Identities=6%  Similarity=-0.064  Sum_probs=41.4

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEE-cCEEEECC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAK-CKKVVCDP  285 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~-a~~vI~~~  285 (342)
                      ..+.+.+.+..+++|+++++++.|++|+..+++.+.....+|+++. +|.||.|.
T Consensus        63 ~~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI  117 (117)
T d1onfa2          63 ESVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIYEHFDHVIYCV  117 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred             HHHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence            4567778888889999999999999998764555443334777774 69999873

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.79  E-value=0.00059  Score=49.60  Aligned_cols=32  Identities=25%  Similarity=0.370  Sum_probs=30.3

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|+|+|+|-.|...|..|.++|++|+++|+++
T Consensus         2 ~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~   33 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDK   33 (132)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCCcceecCCh
Confidence            69999999999999999999999999999963

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=96.77  E-value=0.00062  Score=51.81  Aligned_cols=32  Identities=22%  Similarity=0.211  Sum_probs=30.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .+|+|||+|.+|+.||......|.+|.++|.+
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~   61 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRLGAVVMATDVR   61 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cEEEEEcCcHHHHHHHHHHHHcCCEEEEEecc
Confidence            58999999999999999999999999999986

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.76  E-value=0.00053  Score=50.72  Aligned_cols=37  Identities=16%  Similarity=0.244  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCC--CeEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~   37 (342)
                      |..+.+|.|||+|..|.++|+.|+.+|  .++.++|.+.
T Consensus         2 m~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~   40 (146)
T d1ez4a1           2 MPNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVK   40 (146)
T ss_dssp             BTTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSH
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeeccc
Confidence            777789999999999999999999998  4899999763

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=96.68  E-value=0.00052  Score=53.13  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=30.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+|||+|..|...|..++.+|++|+++|.++
T Consensus         5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCH
Confidence            369999999999999999999999999999863

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=96.62  E-value=0.00062  Score=52.82  Aligned_cols=34  Identities=24%  Similarity=0.170  Sum_probs=31.0

Q ss_pred             CcccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .+.+|+|||+|--|.+.|..|++.|++|+++.++
T Consensus         6 ~m~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~   39 (189)
T d1n1ea2           6 YLNKAVVFGSGAFGTALAMVLSKKCREVCVWHMN   39 (189)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHTTEEEEEEECSC
T ss_pred             eeceEEEECCCHHHHHHHHHHHHcCCeEEEEEec
Confidence            3457999999999999999999999999999875

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.0028  Score=45.15  Aligned_cols=53  Identities=15%  Similarity=0.269  Sum_probs=40.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CC-----cEEEcCEEEEC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EG-----ETAKCKKVVCD  284 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g-----~~~~a~~vI~~  284 (342)
                      ..+.+.+.+..+++|++|++++.|++++.++++....++. ++     .++.||.|++|
T Consensus        64 ~ei~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~~~~~~~~ie~D~vlvA  122 (122)
T d1v59a2          64 GEVAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVA  122 (122)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEEC
T ss_pred             hhhHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeCCCCCeEEEEeCEEEEC
Confidence            3677778888889999999999999998764554444443 22     36999999876

>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: FAD-linked reductases, C-terminal domain
superfamily: FAD-linked reductases, C-terminal domain
family: GDI-like
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.58  E-value=0.002  Score=44.98  Aligned_cols=40  Identities=13%  Similarity=0.216  Sum_probs=35.3

Q ss_pred             ceeEEEEEEecCCCCCCCCCCeEEEEecCCCCCCcCceEE
Q 019351          296 GRVARAIAIMSHPIPNTNDSHSVQVILPQKQLGRRSDIQK  335 (342)
Q Consensus       296 ~~~~~~~~i~~~~l~~~~~~~~~~~~~p~~~~~~~~~~~~  335 (342)
                      .++.|+++|+++|+.++.+......++|+.+.+|+++||+
T Consensus         3 ~~V~RaI~I~d~si~~~~~~~~v~ii~~p~~~~~~~~v~v   42 (113)
T d1vg0a2           3 RQISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRV   42 (113)
T ss_dssp             EEEEEEEEEESSCSSCCSCCCCCEEEEECCSSTTSCCEEE
T ss_pred             EEEEEEEEEECCCCCCCCCCccEEEeecCcccCCCCCEEE
Confidence            4689999999999987777667889999999999999987

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.57  E-value=0.0024  Score=45.40  Aligned_cols=50  Identities=18%  Similarity=0.200  Sum_probs=39.3

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~  286 (342)
                      ..+.+.+.+..+++|+++++++.|+++.   ++.  .+..+|+++.||.||+|+|
T Consensus        72 ~~~~~~~~~~l~~~GV~i~~~~~v~~~~---~~~--v~l~dg~~i~~D~vi~a~G  121 (121)
T d1d7ya2          72 ATLADFVARYHAAQGVDLRFERSVTGSV---DGV--VLLDDGTRIAADMVVVGIG  121 (121)
T ss_dssp             HHHHHHHHHHHHTTTCEEEESCCEEEEE---TTE--EEETTSCEEECSEEEECSC
T ss_pred             HHHHHHHHHHHHHCCcEEEeCCEEEEEe---CCE--EEECCCCEEECCEEEEeeC
Confidence            3556667778888999999999999875   332  2345889999999999986

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.57  E-value=0.0024  Score=45.59  Aligned_cols=54  Identities=19%  Similarity=0.274  Sum_probs=40.4

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CC--cEEEcCEEEECC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EG--ETAKCKKVVCDP  285 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g--~~~~a~~vI~~~  285 (342)
                      ..+...+.+.+++.|++|++++.|++|+.++++..+.++.  +|  .++.||.|++|+
T Consensus        66 ~~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~~~~~g~~~~i~~D~vLvAA  123 (123)
T d1dxla2          66 AEIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVEPSAGGEQTIIEADVVLVSA  123 (123)
T ss_dssp             HHHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEEESSSCCCEEEEESEEECCC
T ss_pred             hcchhhhhhhhhcccceEEcCCceEEEEEccCeEEEEEEECCCCeEEEEEcCEEEEcC
Confidence            4677788888899999999999999998763443333443  22  358999999875

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=96.55  E-value=0.001  Score=49.63  Aligned_cols=37  Identities=19%  Similarity=0.297  Sum_probs=32.5

Q ss_pred             CCCcccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            1 MDEEYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      |.++.+|+|||+|-.|.++|+.|+..|. +++++|.+.
T Consensus         4 ~~k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~   41 (154)
T d1pzga1           4 VQRRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVK   41 (154)
T ss_dssp             CSCCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSS
T ss_pred             ccCCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEecc
Confidence            4567899999999999999999999984 899999764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.48  E-value=0.0034  Score=44.22  Aligned_cols=51  Identities=16%  Similarity=0.098  Sum_probs=39.0

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE-eCC--cEEEcCEEEEC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEG--ETAKCKKVVCD  284 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~-~~g--~~~~a~~vI~~  284 (342)
                      .+...+.+..+++|+++++++.|++++.+ ++.+.... .+|  .++.||.||++
T Consensus        64 ~~~~~l~~~l~~~GI~i~~~~~v~~i~~~-~~~~~v~~~~~g~~~~i~~D~Vlvs  117 (117)
T d1ebda2          64 QMAAIIKKRLKKKGVEVVTNALAKGAEER-EDGVTVTYEANGETKTIDADYVLVT  117 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEEESEEEEEEEEE-TTEEEEEEEETTEEEEEEESEEEEC
T ss_pred             hhHHHHHHHHHhcCCEEEcCCEEEEEEEc-CCEEEEEEEeCCCEEEEEeEEEEEC
Confidence            56777888889999999999999999876 44433322 344  46999999874

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=96.43  E-value=0.0029  Score=45.22  Aligned_cols=54  Identities=17%  Similarity=0.173  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe--CC--cEEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS--EG--ETAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~--~g--~~~~a~~vI~~~~  286 (342)
                      ..+.+.+.+..+++|+++++++.|++++.+ ++++.....  ++  +++.||.|++|+|
T Consensus        67 ~~~~~~l~~~l~~~gv~~~~~~~v~~v~~~-~~g~~v~~~~~~g~~~~i~~D~vl~A~G  124 (125)
T d1ojta2          67 RDLVKVWQKQNEYRFDNIMVNTKTVAVEPK-EDGVYVTFEGANAPKEPQRYDAVLVAAG  124 (125)
T ss_dssp             HHHHHHHHHHHGGGEEEEECSCEEEEEEEE-TTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred             hhHHHHHHHHHHHcCcccccCcEEEEEEEc-CCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence            366777888888999999999999999877 444433222  22  4799999999986

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.40  E-value=0.0014  Score=48.78  Aligned_cols=33  Identities=27%  Similarity=0.275  Sum_probs=29.3

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC-eEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~~   38 (342)
                      +|+|||||-+|+=+|..|.+.|. +|+++++++.
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~   80 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGF   80 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCG
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCCh
Confidence            69999999999999999999984 6889988654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=96.38  E-value=0.0012  Score=47.92  Aligned_cols=31  Identities=29%  Similarity=0.272  Sum_probs=29.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +++|||.|-.|..+|..|.+.|++|+++|.+
T Consensus         2 ~~iIiG~G~~G~~la~~L~~~g~~vvvid~d   32 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHRMGHEVLAVDIN   32 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCeEEEecCc
Confidence            5899999999999999999999999999996

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=96.33  E-value=0.0017  Score=49.04  Aligned_cols=31  Identities=29%  Similarity=0.415  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|.|||.|.-|.+.|..|+++|++|+++|++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~   32 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQ   32 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEeecHHHHHHHHHHHHCCCEEEEEECC
Confidence            5999999999999999999999999999985

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.28  E-value=0.0038  Score=43.88  Aligned_cols=51  Identities=16%  Similarity=0.127  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeC--CcEEEcCEEEECCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSE--GETAKCKKVVCDPS  286 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~--g~~~~a~~vI~~~~  286 (342)
                      .+.+.+.+..+++|++++++++|++++   ++.......+  +.++.||.||+|+|
T Consensus        63 ~~~~~l~~~l~~~gV~i~~~~~V~~i~---~~~~~~~~~~~~~~~i~~D~vi~A~G  115 (115)
T d1lvla2          63 ELTAPVAESLKKLGIALHLGHSVEGYE---NGCLLANDGKGGQLRLEADRVLVAVG  115 (115)
T ss_dssp             HHHHHHHHHHHHHTCEEETTCEEEEEE---TTEEEEECSSSCCCEECCSCEEECCC
T ss_pred             hhHHHHHHHHHhhcceEEcCcEEEEEc---CCeEEEEEcCCCeEEEEcCEEEEecC
Confidence            466677788889999999999999985   3433323333  35799999999986

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=96.06  E-value=0.0029  Score=46.95  Aligned_cols=33  Identities=21%  Similarity=0.462  Sum_probs=30.4

Q ss_pred             ccEEEEC-CCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG-~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.|+||| .|.-|.+.|..|+++|++|.++++..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccc
Confidence            4799999 69999999999999999999999853

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.05  E-value=0.0043  Score=44.08  Aligned_cols=49  Identities=18%  Similarity=0.233  Sum_probs=39.5

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSY  287 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~  287 (342)
                      .+.+.+.+..+++|+++++++.|+++..   +   ++.++++++.||.||+|+|.
T Consensus        73 ~~~~~~~~~l~~~GV~~~~~~~v~~~~~---~---~v~~~~~~i~~D~vi~a~Gv  121 (122)
T d1xhca2          73 ELSNMIKDMLEETGVKFFLNSELLEANE---E---GVLTNSGFIEGKVKICAIGI  121 (122)
T ss_dssp             HHHHHHHHHHHHTTEEEECSCCEEEECS---S---EEEETTEEEECSCEEEECCE
T ss_pred             HHHHHHHHHHHHCCcEEEeCCEEEEEeC---C---EEEeCCCEEECCEEEEEEEe
Confidence            4566677778889999999999998843   2   24678899999999999873

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.83  E-value=0.0031  Score=48.32  Aligned_cols=30  Identities=30%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~   35 (342)
                      +|+|||+|.-|.+.|..|+++|++|.++-+
T Consensus         2 kI~ViGaG~~GtalA~~la~~g~~V~l~~r   31 (180)
T d1txga2           2 IVSILGAGAMGSALSVPLVDNGNEVRIWGT   31 (180)
T ss_dssp             EEEEESCCHHHHHHHHHHHHHCCEEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHHHCCCEEEEEEe
Confidence            699999999999999999999999999854

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.015  Score=41.35  Aligned_cols=54  Identities=9%  Similarity=-0.049  Sum_probs=39.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEE--EEEe-CC------cEEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVV--GVTS-EG------ETAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~--~v~~-~g------~~~~a~~vI~~~~  286 (342)
                      ..+.+.+.+..+++|+++++++.|++|..+ +++..  .+.. .|      ..+.||.||+|+|
T Consensus        63 ~~~~~~~~~~l~~~Gv~i~~~~~v~~i~~~-~~g~~v~~~~~~~g~~~~~~~~~~~D~vl~a~G  125 (125)
T d3grsa2          63 SMISTNCTEELENAGVEVLKFSQVKEVKKT-LSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIG  125 (125)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTEEEEEEEEE-TTEEEEEEEECCTTSCCEEEEEEEESEEEECSC
T ss_pred             hHHHHHHHHHHHHCCCEEEeCCEEEEEEEc-CCeEEEEEEEccCCcCcCccccccCCEEEEEeC
Confidence            456777888888999999999999999876 33322  2222 22      2467999999876

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.71  E-value=0.0048  Score=46.23  Aligned_cols=31  Identities=16%  Similarity=0.160  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .|.|||.|..|...|..|.++|++|.+++++
T Consensus         3 kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~   33 (162)
T d3cuma2           3 QIAFIGLGHMGAPMATNLLKAGYLLNVFDLV   33 (162)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSS
T ss_pred             EEEEEEEHHHHHHHHHHHHHCCCeEEEEECc
Confidence            5999999999999999999999999999985

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.58  E-value=0.005  Score=47.73  Aligned_cols=31  Identities=29%  Similarity=0.201  Sum_probs=28.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|+|||.|..||.+|..|+ .|++|+.+|-++
T Consensus         2 kI~ViGlG~vGl~~a~~~a-~g~~V~g~Din~   32 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLLS-LQNEVTIVDILP   32 (196)
T ss_dssp             EEEEECCSHHHHHHHHHHT-TTSEEEEECSCH
T ss_pred             EEEEECCChhHHHHHHHHH-CCCcEEEEECCH
Confidence            5999999999999999887 599999999864

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.50  E-value=0.0066  Score=45.41  Aligned_cols=31  Identities=29%  Similarity=0.327  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|.|||.|..|...|..|+++|++|.++++.
T Consensus         2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~   32 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRN   32 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEEehhHHHHHHHHHHHHCCCeEEEEeCC
Confidence            5999999999999999999999999999985

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=95.36  E-value=0.008  Score=45.64  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=30.3

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -+|.|||-|..|...|..|.++|++|.++++.
T Consensus         3 ~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~   34 (176)
T d2pgda2           3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRT   34 (176)
T ss_dssp             BSEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             CcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCC
Confidence            47999999999999999999999999999985

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.36  E-value=0.0067  Score=46.61  Aligned_cols=31  Identities=29%  Similarity=0.228  Sum_probs=28.6

Q ss_pred             cEEEE-CCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVL-GTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIi-G~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|+|| |+|--|...|..|+++|++|++..|+
T Consensus         2 ki~vigGaG~iG~alA~~la~~G~~V~l~~R~   33 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLATLGHEIVVGSRR   33 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             EEEEEeCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            58999 67999999999999999999999875

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=95.25  E-value=0.0065  Score=41.97  Aligned_cols=32  Identities=16%  Similarity=0.009  Sum_probs=28.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -+|+|||+|.+|+=.|..|++.+.+|+++-++
T Consensus        33 K~VlVVG~g~Sa~dia~~l~~~ak~v~~~~~r   64 (107)
T d2gv8a2          33 ESVLVVGGASSANDLVRHLTPVAKHPIYQSLL   64 (107)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTTSCSSEEEECT
T ss_pred             CeEEEECCCCCHHHHHHHHHHhcCEEEEEEec
Confidence            47999999999999999999998887776654

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=95.22  E-value=0.01  Score=44.15  Aligned_cols=33  Identities=15%  Similarity=0.119  Sum_probs=30.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      ..+|.|||+|..|.++|+.|+.+|.  ++.++|.+
T Consensus        20 ~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~   54 (160)
T d1i0za1          20 NNKITVVGVGQVGMACAISILGKSLADELALVDVL   54 (160)
T ss_dssp             SSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            3689999999999999999999995  79999985

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=95.09  E-value=0.01  Score=43.64  Aligned_cols=33  Identities=24%  Similarity=0.398  Sum_probs=29.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      ..+|.|||+|..|.++|+.|+..|.  ++.++|..
T Consensus         6 ~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~   40 (148)
T d1ldna1           6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN   40 (148)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             CCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence            4689999999999999999999984  79999975

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=94.96  E-value=0.0095  Score=43.45  Aligned_cols=32  Identities=16%  Similarity=0.378  Sum_probs=28.8

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      +|.|||+|..|.++|+.|+..+. +++++|...
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~   35 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAKELGDIVLLDIVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCcceEEEEeecc
Confidence            79999999999999999999884 899999754

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.96  E-value=0.012  Score=41.02  Aligned_cols=31  Identities=19%  Similarity=0.165  Sum_probs=29.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~   35 (342)
                      ..|+|||+|-.|..-|..|.+.|.+|+|+..
T Consensus        13 k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~   43 (113)
T d1pjqa1          13 RDCLIVGGGDVAERKARLLLEAGARLTVNAL   43 (113)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTBEEEEEES
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence            5799999999999999999999999999865

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=94.91  E-value=0.014  Score=42.57  Aligned_cols=33  Identities=12%  Similarity=0.215  Sum_probs=29.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      .+|.|||+|..|.++|+.|..+|.  ++.++|...
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~   36 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK   36 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence            379999999999999999999985  799999764

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.87  E-value=0.0075  Score=44.47  Aligned_cols=30  Identities=17%  Similarity=0.138  Sum_probs=28.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMD   34 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE   34 (342)
                      -.|+|||||-.|+.-|..|.++|.+|+|+.
T Consensus        14 krvLViGgG~va~~ka~~Ll~~GA~VtVva   43 (150)
T d1kyqa1          14 KRILLIGGGEVGLTRLYKLMPTGCKLTLVS   43 (150)
T ss_dssp             CEEEEEEESHHHHHHHHHHGGGTCEEEEEE
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEEe
Confidence            579999999999999999999999999994

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=94.79  E-value=0.014  Score=42.48  Aligned_cols=32  Identities=19%  Similarity=0.270  Sum_probs=29.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      .+|+|||+|..|.++|+.|+.+|.  ++.++|.+
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~   35 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA   35 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            479999999999999999999995  79999975

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=94.78  E-value=0.014  Score=44.33  Aligned_cols=31  Identities=32%  Similarity=0.423  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|.|||.|..|...|..|.++|++|.+++++
T Consensus         3 kIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~   33 (178)
T d1pgja2           3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRT   33 (178)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred             EEEEEeehHHHHHHHHHHHHCCCeEEEEECC
Confidence            6999999999999999999999999999874

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=94.78  E-value=0.018  Score=42.36  Aligned_cols=34  Identities=15%  Similarity=0.341  Sum_probs=29.8

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~   37 (342)
                      ..+|.|||+|..|.++|+.|.+.+ .++.++|.+.
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~   37 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVK   37 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccC
Confidence            468999999999999999999988 5899999753

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=94.69  E-value=0.012  Score=43.11  Aligned_cols=31  Identities=19%  Similarity=0.338  Sum_probs=28.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      +|.|||+|..|.++|+.|..+|.  +++++|.+
T Consensus         3 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   35 (146)
T d1hyha1           3 KIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN   35 (146)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             eEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence            69999999999999999999884  79999875

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=94.68  E-value=0.011  Score=44.33  Aligned_cols=31  Identities=23%  Similarity=0.225  Sum_probs=28.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .|+|+|+|..|+.++..+...|.+|+++|.+
T Consensus        29 ~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~   59 (170)
T d1e3ja2          29 TVLVIGAGPIGLVSVLAAKAYGAFVVCTARS   59 (170)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEEcccccchhhHhhHhhhcccccccchH
Confidence            5899999999999999999999999999985

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=94.66  E-value=0.017  Score=42.11  Aligned_cols=32  Identities=16%  Similarity=0.202  Sum_probs=29.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCC--CeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~~   37 (342)
                      +|+|||+|-.|.++|+.|+..|  -++.++|.++
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~   35 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVE   35 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEecccc
Confidence            6999999999999999999998  4899999765

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.66  E-value=0.019  Score=42.58  Aligned_cols=32  Identities=19%  Similarity=0.284  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      .+|.|||+|..|.++|+.|...|.  ++.++|.+
T Consensus        20 ~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~   53 (159)
T d2ldxa1          20 CKITVVGVGDVGMACAISILLKGLADELALVDAD   53 (159)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence            589999999999999999999985  79999975

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.02  Score=40.74  Aligned_cols=36  Identities=25%  Similarity=0.188  Sum_probs=32.7

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      -+|+|||+|-+.+=.|..|++-+.+|+++-+++..-
T Consensus        28 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~~   63 (126)
T d1trba2          28 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFR   63 (126)
T ss_dssp             SEEEEECSSHHHHHHHHHHTTTSSEEEEECSSSSCC
T ss_pred             CEEEEECCCHHHHHHHHHHhhcCCcEEEEeeccccc
Confidence            489999999999999999999999999998877553

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=94.52  E-value=0.017  Score=42.58  Aligned_cols=32  Identities=22%  Similarity=0.214  Sum_probs=29.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +|.|||.|..|...|..|.++|++|++.++.+
T Consensus         2 kIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~   33 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLRSRGVEVVTSLEGR   33 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCEEEECCTTC
T ss_pred             EEEEEcHHHHHHHHHHHHHHCCCeEEEEcCch
Confidence            69999999999999999999999999998743

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=94.46  E-value=0.023  Score=40.34  Aligned_cols=37  Identities=16%  Similarity=-0.051  Sum_probs=33.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||+|-+.+-.|.+|++-..+|+++-+++..-+
T Consensus        31 k~V~VvGgG~sA~~~A~~L~~~a~~V~li~r~~~~~~   67 (126)
T d1fl2a2          31 KRVAVIGGGNSGVEAAIDLAGIVEHVTLLEFAPEMKA   67 (126)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTBSEEEEECSSSSCCS
T ss_pred             ceEEEEeCCHHHHHHHHhhhccCCceEEEeccccccc
Confidence            4899999999999999999999999999988766533

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.43  E-value=0.018  Score=43.16  Aligned_cols=31  Identities=26%  Similarity=0.475  Sum_probs=27.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      .|.|||.|.-|.+.|..|.++|.  +|..+|++
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~   35 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDIN   35 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSC
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECC
Confidence            49999999999999999999995  78888884

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.39  E-value=0.025  Score=40.41  Aligned_cols=37  Identities=24%  Similarity=0.313  Sum_probs=33.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGG   41 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG   41 (342)
                      -+|+|||+|-+.+-.|.+|++--.+|+++-+++.+.+
T Consensus        35 k~V~VvGgGdsA~e~A~~L~~~a~~V~li~r~~~~ra   71 (130)
T d1vdca2          35 KPLAVIGGGDSAMEEANFLTKYGSKVYIIHRRDAFRA   71 (130)
T ss_dssp             SEEEEECCSHHHHHHHHHHTTTSSEEEEECSSSSCCS
T ss_pred             CEEEEEcCchHHHHHHHHHhCCCCcEEEEEecccccc
Confidence            5899999999999999999999999999999887754

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.35  E-value=0.016  Score=42.13  Aligned_cols=31  Identities=10%  Similarity=-0.023  Sum_probs=28.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC--eEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL--KVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~--~V~vlE~~   36 (342)
                      +|.|||+|-.|.++|+.|+.+|.  ++.++|.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~   34 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA   34 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence            69999999999999999999883  79999965

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.34  E-value=0.015  Score=43.68  Aligned_cols=31  Identities=23%  Similarity=0.241  Sum_probs=28.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      .|+|+|+|..|+.++..+...|. +|++.|.+
T Consensus        29 ~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~   60 (171)
T d1pl8a2          29 KVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLS   60 (171)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             EEEEECCCccHHHHHHHHHHcCCceEEeccCC
Confidence            59999999999999999999997 79999875

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.28  E-value=0.022  Score=41.54  Aligned_cols=32  Identities=34%  Similarity=0.273  Sum_probs=28.1

Q ss_pred             cEEEECC-CchHHHHHHhhhhCCC--eEEEEcCCC
Q 019351            6 DVIVLGT-GLKECILSGLLSVDGL--KVLHMDRND   37 (342)
Q Consensus         6 DViIiG~-GiaGl~aA~~L~~~G~--~V~vlE~~~   37 (342)
                      +|+|||| |..|.++|+.|+.+|.  ++.++|.+.
T Consensus         2 Kv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~   36 (144)
T d1mlda1           2 KVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAH   36 (144)
T ss_dssp             EEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSS
T ss_pred             eEEEECCCChHHHHHHHHHHhCCccceEEEEeccc
Confidence            6999996 9999999999999994  688998753

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.10  E-value=0.026  Score=41.51  Aligned_cols=32  Identities=19%  Similarity=0.100  Sum_probs=29.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .++|+|.|-.|...|..|.+.|.+|+|+|..+
T Consensus         5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~   36 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQRGQNVTVISNLP   36 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCEEEEeccc
Confidence            59999999999999999999999999999853

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.96  E-value=0.017  Score=42.86  Aligned_cols=26  Identities=23%  Similarity=0.164  Sum_probs=23.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeE
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKV   30 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V   30 (342)
                      -+|+|||||..|+-+|..|++.|.++
T Consensus        30 krVvVIGgG~~g~d~a~~~~r~G~~~   55 (162)
T d1ps9a2          30 NKVAIIGCGGIGFDTAMYLSQPGEST   55 (162)
T ss_dssp             SEEEEECCHHHHHHHHHHHTCCSSCG
T ss_pred             CceEEEcCchhHHHHHHHHHHcCCcc
Confidence            37999999999999999999999653

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.96  E-value=0.023  Score=41.44  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=28.1

Q ss_pred             cEEEECC-CchHHHHHHhhhhCC--CeEEEEcCC
Q 019351            6 DVIVLGT-GLKECILSGLLSVDG--LKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~-GiaGl~aA~~L~~~G--~~V~vlE~~   36 (342)
                      +|.|||+ |..|.++|+.|+.+|  .++.++|..
T Consensus         2 KV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~   35 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLLAKEPFMKDLVLIGRE   35 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECG
T ss_pred             EEEEECCCChHHHHHHHHHHhCCcccccccccch
Confidence            6999996 999999999999999  489999875

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.96  E-value=0.02  Score=42.69  Aligned_cols=32  Identities=22%  Similarity=0.168  Sum_probs=29.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -.|+|+|+|..|+.++..+...|.+|++++++
T Consensus        29 ~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~   60 (166)
T d1llua2          29 QWVAISGIGGLGHVAVQYARAMGLHVAAIDID   60 (166)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CEEEEeeccccHHHHHHHHHHcCCccceecch
Confidence            36999999999999999999999999999875

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=93.88  E-value=0.023  Score=41.17  Aligned_cols=31  Identities=16%  Similarity=0.232  Sum_probs=28.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCC--CeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG--LKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G--~~V~vlE~~   36 (342)
                      +|.|||+|-.|.++|+.|+.+|  .++.++|.+
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~   34 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD   34 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence            6999999999999999999988  489999975

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=93.86  E-value=0.034  Score=37.32  Aligned_cols=36  Identities=17%  Similarity=0.180  Sum_probs=31.5

Q ss_pred             CCCcccEEEECCCchHHHH-HHhhhhCCCeEEEEcCC
Q 019351            1 MDEEYDVIVLGTGLKECIL-SGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         1 m~~~~DViIiG~GiaGl~a-A~~L~~~G~~V~vlE~~   36 (342)
                      |+....+-+||-|=+|+++ |..|.++|++|+.-|..
T Consensus         5 ~~~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~   41 (96)
T d1p3da1           5 MRRVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIA   41 (96)
T ss_dssp             CTTCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESC
T ss_pred             chhCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCC
Confidence            4455679999999999988 99999999999999975

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.85  E-value=0.024  Score=42.47  Aligned_cols=32  Identities=16%  Similarity=0.167  Sum_probs=28.9

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|+|+|+|..|+.++..+...|.+|++++.++
T Consensus        30 ~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          30 KVGIVGLGGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             EEEEECCCCcchhHHHHhhhccccccccccch
Confidence            58999999999999988888899999999864

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.029  Score=42.12  Aligned_cols=32  Identities=16%  Similarity=0.080  Sum_probs=29.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -+|+|+|+|=++-++++.|++.|.+|.|+-|.
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~i~I~nRt   50 (170)
T d1nyta1          19 LRILLIGAGGASRGVLLPLLSLDCAVTITNRT   50 (170)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHhcccceEEEeccch
Confidence            47999999999999999999999999999764

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.48  E-value=0.036  Score=40.68  Aligned_cols=31  Identities=10%  Similarity=0.127  Sum_probs=29.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|.|||+|.-|.+.|..|.++|++|+|.+++
T Consensus         2 kIg~IG~G~mG~al~~~l~~~~~~i~v~~r~   32 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGLKQTPHELIISGSS   32 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHTTSSCEEEEECSS
T ss_pred             EEEEEeccHHHHHHHHHHHhCCCeEEEEcCh
Confidence            6999999999999999999999999999875

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.44  E-value=0.084  Score=36.99  Aligned_cols=55  Identities=16%  Similarity=0.164  Sum_probs=38.6

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCC--cEEEEEe---C-Cc--EEEcCEEEECCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEG--KVVGVTS---E-GE--TAKCKKVVCDPS  286 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~--~~~~v~~---~-g~--~~~a~~vI~~~~  286 (342)
                      ..+.+.+.+..++.|++|++++.|++++..+++  ....++.   + ++  ...+|.|++|+|
T Consensus        60 ~~~~~~l~~~l~~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG  122 (122)
T d1h6va2          60 QDMANKIGEHMEEHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG  122 (122)
T ss_dssp             HHHHHHHHHHHHHTTEEEEESCEEEEEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred             HHHHHHHHHHHHHCCCEEEECCEEEEEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence            357788888889999999999999999754221  1233332   2 22  356899999876

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.03  E-value=0.047  Score=42.14  Aligned_cols=35  Identities=17%  Similarity=0.257  Sum_probs=30.7

Q ss_pred             CCCcccEEEECC-CchHHHHHHhhhhCCCeEEEEcCC
Q 019351            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         1 m~~~~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      |..+ +|+|+|| |..|...+.+|.++|++|+++.|+
T Consensus         1 m~~k-kIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~   36 (205)
T d1hdoa_           1 MAVK-KIAIFGATGQTGLTTLAQAVQAGYEVTVLVRD   36 (205)
T ss_dssp             CCCC-EEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCCC-EEEEECCCCHHHHHHHHHHHHCcCEEEEEEcC
Confidence            5543 6999995 999999999999999999999875

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=92.79  E-value=0.08  Score=36.42  Aligned_cols=35  Identities=23%  Similarity=0.219  Sum_probs=31.7

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      .+.|.|+|||=-|-..|....+.|++|.++|..+.
T Consensus        11 ~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~~   45 (111)
T d1kjqa2          11 ATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYAD   45 (111)
T ss_dssp             CCEEEEESCSHHHHHHHHHHHTTTCEEEEEESSTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCCC
Confidence            36799999999999999999999999999998644

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.77  E-value=0.032  Score=43.51  Aligned_cols=44  Identities=9%  Similarity=0.084  Sum_probs=34.4

Q ss_pred             HHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCC
Q 019351          242 SAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYL  288 (342)
Q Consensus       242 ~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~  288 (342)
                      +++.|++++++++|++|+.+ +.  .....+|.++.+|.||+|+|..
T Consensus        93 ~~~~gI~~~~g~~V~~id~~-~~--~V~l~dG~~i~~d~lViAtG~~  136 (213)
T d1m6ia1          93 IENGGVAVLTGKKVVQLDVR-DN--MVKLNDGSQITYEKCLIATGGT  136 (213)
T ss_dssp             STTCEEEEEETCCEEEEEGG-GT--EEEETTSCEEEEEEEEECCCEE
T ss_pred             HHHCCeEEEeCCEEEEeecc-Cc--eeeeccceeeccceEEEeeeee
Confidence            35679999999999999765 33  2233488899999999998854

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=92.74  E-value=0.064  Score=39.97  Aligned_cols=33  Identities=27%  Similarity=0.317  Sum_probs=29.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ..+|+|+|+|=++-++++.|.+.|. +|.|+-|+
T Consensus        17 ~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~   50 (167)
T d1npya1          17 NAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARN   50 (167)
T ss_dssp             TSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSC
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCCEEEEeccc
Confidence            3579999999999999999999995 89999774

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.65  E-value=0.039  Score=41.80  Aligned_cols=32  Identities=16%  Similarity=0.165  Sum_probs=28.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      .|+|+|+|..|+.++..+...|. +|+++|.++
T Consensus        31 ~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~   63 (182)
T d1vj0a2          31 TVVIQGAGPLGLFGVVIARSLGAENVIVIAGSP   63 (182)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTBSEEEEEESCH
T ss_pred             EEEEECCCccchhheeccccccccccccccccc
Confidence            58999999999999999999996 799998853

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=92.65  E-value=0.055  Score=39.15  Aligned_cols=30  Identities=20%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             cEEEEC-CCchHHHHHHhhhhCCC--eEEEEcC
Q 019351            6 DVIVLG-TGLKECILSGLLSVDGL--KVLHMDR   35 (342)
Q Consensus         6 DViIiG-~GiaGl~aA~~L~~~G~--~V~vlE~   35 (342)
                      +|.||| +|..|.++|+.|..+|.  ++.++|-
T Consensus         2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di   34 (142)
T d1o6za1           2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI   34 (142)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred             eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence            699999 69999999999999984  6888885

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=92.57  E-value=0.052  Score=40.45  Aligned_cols=31  Identities=23%  Similarity=0.176  Sum_probs=28.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .|+|+|+|..|+.++..+...|.++++++.+
T Consensus        33 ~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~   63 (168)
T d1uufa2          33 KVGVVGIGGLGHMGIKLAHAMGAHVVAFTTS   63 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             EEEEeccchHHHHHHHHhhcccccchhhccc
Confidence            5899999999999999888899999898875

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=92.39  E-value=0.16  Score=39.78  Aligned_cols=41  Identities=24%  Similarity=0.302  Sum_probs=32.7

Q ss_pred             CcEEEcCCccceEEEcCCCcEEEEEe-CCcEEEcCEEEECCCCC
Q 019351          246 GGTYMLNKPECKVEFDEEGKVVGVTS-EGETAKCKKVVCDPSYL  288 (342)
Q Consensus       246 G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~  288 (342)
                      +..|+. .+|..+..+ ++++.+|.+ +|.++.|+.||+|+|..
T Consensus        82 nL~i~q-~~V~dli~e-~~~v~gV~t~~G~~~~AkaVILtTGTF  123 (230)
T d2cula1          82 PLHLFQ-ATATGLLLE-GNRVVGVRTWEGPPARGEKVVLAVGSF  123 (230)
T ss_dssp             TEEEEE-CCEEEEEEE-TTEEEEEEETTSCCEECSEEEECCTTC
T ss_pred             CHHHHh-ccceeeEec-ccceeeEEeccccEEEEeEEEEccCcc
Confidence            677764 457777776 788888888 68899999999999853

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.13  E-value=0.058  Score=40.54  Aligned_cols=32  Identities=16%  Similarity=0.271  Sum_probs=28.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      -.|+|+|+|..|+.++..++..|. +|++.|.+
T Consensus        29 ~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~   61 (174)
T d1jqba2          29 SSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSR   61 (174)
T ss_dssp             CCEEEECCSHHHHHHHHHHHTTTCSCEEEECCC
T ss_pred             CEEEEEcCCcchhhhhhhhhcccccccccccch
Confidence            369999999999999999999995 79999875

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.12  E-value=0.066  Score=40.29  Aligned_cols=32  Identities=19%  Similarity=0.216  Sum_probs=29.0

Q ss_pred             cEEEECCCchHHHHHHhhhhCC-CeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~   37 (342)
                      -|+|+|+|..|+.++..++..| .+|+++|.++
T Consensus        32 tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~   64 (176)
T d1d1ta2          32 TCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNK   64 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceEEEecCcH
Confidence            3899999999999999999999 6899999853

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=91.83  E-value=0.083  Score=39.13  Aligned_cols=31  Identities=23%  Similarity=0.222  Sum_probs=28.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      .|+|+|+|..|+.++..++..|.+|++.+.+
T Consensus        30 ~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~   60 (168)
T d1rjwa2          30 WVAIYGIGGLGHVAVQYAKAMGLNVVAVDIG   60 (168)
T ss_dssp             EEEEECCSTTHHHHHHHHHHTTCEEEEECSC
T ss_pred             EEEEeecccchhhhhHHHhcCCCeEeccCCC
Confidence            5899999999999999999999999998864

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=91.67  E-value=0.072  Score=38.93  Aligned_cols=31  Identities=26%  Similarity=0.437  Sum_probs=28.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~   36 (342)
                      +|.|||+|.-|.+.|..|.++| ++|.+.+++
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~   33 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRG   33 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSS
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCC
Confidence            6999999999999999888887 999999885

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=91.55  E-value=0.095  Score=42.42  Aligned_cols=34  Identities=12%  Similarity=0.148  Sum_probs=31.1

Q ss_pred             cccEEEECC-CchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      +.+|+|+|| |..|-..+.+|.++|++|+++.++.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~   37 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES   37 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence            458999997 9999999999999999999999864

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=91.47  E-value=0.087  Score=39.51  Aligned_cols=32  Identities=19%  Similarity=0.216  Sum_probs=28.3

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      .|+|+|+|..|+.++..+...|. +|++.|.++
T Consensus        31 ~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~   63 (174)
T d1e3ia2          31 TCAVFGLGCVGLSAIIGCKIAGASRIIAIDING   63 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEECCChHHHHHHHHHHHhCCceeeeeccch
Confidence            58999999999999999999996 688888754

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.45  E-value=0.07  Score=40.89  Aligned_cols=32  Identities=25%  Similarity=0.159  Sum_probs=27.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      -.|+|+|+|..|+.++..++..|. +|++.|..
T Consensus        27 ~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~   59 (195)
T d1kola2          27 STVYVAGAGPVGLAAAASARLLGAAVVIVGDLN   59 (195)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESC
T ss_pred             CEEEEECcCHHHHHHHHHHHhhcccceeeeccc
Confidence            368999999999999998888885 78888864

>d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=91.30  E-value=0.16  Score=35.12  Aligned_cols=34  Identities=26%  Similarity=0.308  Sum_probs=29.5

Q ss_pred             cccEEEECCC-----------chHHHHHHhhhhCCCeEEEEcCCC
Q 019351            4 EYDVIVLGTG-----------LKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~G-----------iaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .-+|+|||+|           .++..|+..|.+.|++++++--++
T Consensus         4 ~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~~g~~~IliN~NP   48 (121)
T d1a9xa4           4 REKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNP   48 (121)
T ss_dssp             SCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred             CCEEEEECCCcCcccccchhhHHHHHHHHHHHhcCCeEEEEecCh
Confidence            3579999998           578899999999999999997763

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=91.11  E-value=0.11  Score=42.30  Aligned_cols=35  Identities=14%  Similarity=0.138  Sum_probs=30.8

Q ss_pred             CcccEEEECC-CchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            3 EEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         3 ~~~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ++.+|+|+|| |..|...+.+|.++|++|+++-++.
T Consensus         2 ~k~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~   37 (312)
T d1qyda_           2 KKSRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPE   37 (312)
T ss_dssp             CCCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCC
Confidence            3457999996 9999999999999999999998753

>d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose-3', 5'-epimerase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.01  E-value=0.12  Score=43.58  Aligned_cols=37  Identities=19%  Similarity=0.295  Sum_probs=32.3

Q ss_pred             CCCcccEEEEC-CCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            1 MDEEYDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         1 m~~~~DViIiG-~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |.+..+|+|.| +|..|..++.+|.++|++|+++++..
T Consensus        12 ~~~nMKILVTGgsGfIGs~lv~~L~~~g~~V~~~d~~~   49 (363)
T d2c5aa1          12 PSENLKISITGAGGFIASHIARRLKHEGHYVIASDWKK   49 (363)
T ss_dssp             TTSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEeCCC
Confidence            55567899999 59999999999999999999998643

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=90.94  E-value=0.072  Score=37.62  Aligned_cols=36  Identities=11%  Similarity=0.229  Sum_probs=27.2

Q ss_pred             CcccEEEECCCchHHHHHHhhhh-CCCe-EEEEcCCCC
Q 019351            3 EEYDVIVLGTGLKECILSGLLSV-DGLK-VLHMDRNDY   38 (342)
Q Consensus         3 ~~~DViIiG~GiaGl~aA~~L~~-~G~~-V~vlE~~~~   38 (342)
                      .++.|+|+|||-+|-..+.++.. .|++ |..+|-.+.
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~   39 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFELRGFFDVDPE   39 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTT
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchH
Confidence            56899999999999999887764 4666 455565544

>d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=90.90  E-value=0.067  Score=41.83  Aligned_cols=32  Identities=22%  Similarity=0.282  Sum_probs=28.5

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -+|+|||+|-+|.=+|..|++.+.+++++=+.
T Consensus        33 K~V~VvG~G~Sa~dia~~~~~~~~~~~~~~~~   64 (235)
T d1w4xa2          33 QRVGVIGTGSSGIQVSPQIAKQAAELFVFQRT   64 (235)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHBSEEEEEESS
T ss_pred             CEEEEECCCccHHHHHHHHHhhhccccccccc
Confidence            47999999999999999999999888877554

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=90.86  E-value=0.1  Score=37.78  Aligned_cols=32  Identities=28%  Similarity=0.158  Sum_probs=26.4

Q ss_pred             cEEEEC-CCchHHHHHHhhhh-CC--CeEEEEcCCC
Q 019351            6 DVIVLG-TGLKECILSGLLSV-DG--LKVLHMDRND   37 (342)
Q Consensus         6 DViIiG-~GiaGl~aA~~L~~-~G--~~V~vlE~~~   37 (342)
                      +|.||| +|..|.++|+.|+. .+  .++.++|..+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~   37 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAP   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSST
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccc
Confidence            799999 59999999998864 34  6899999653

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=90.79  E-value=0.078  Score=42.24  Aligned_cols=32  Identities=25%  Similarity=0.442  Sum_probs=29.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ..|+|||+|-.|..+|..|++.|. +++++|..
T Consensus        31 ~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          31 SRVLIVGLGGLGCAASQYLASAGVGNLTLLDFD   63 (247)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCCeEEEECCc
Confidence            579999999999999999999994 89999874

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.12  Score=38.05  Aligned_cols=32  Identities=19%  Similarity=0.072  Sum_probs=30.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|+|+|-|..|-.+|..|...|.+|+|.|..+
T Consensus        26 ~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          26 VAVVAGYGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             EEEEeccccccHHHHHHHHhCCCeeEeeeccc
Confidence            68999999999999999999999999999964

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=90.29  E-value=0.1  Score=41.96  Aligned_cols=33  Identities=18%  Similarity=0.305  Sum_probs=30.3

Q ss_pred             ccEEEECC-CchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGT-GLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .+|+|.|| |..|-..+.+|.++|++|+.+++++
T Consensus         2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTT
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechh
Confidence            46999998 9999999999999999999998864

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=90.08  E-value=0.15  Score=38.46  Aligned_cols=33  Identities=21%  Similarity=0.459  Sum_probs=29.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      ..|+|+|+|=++-++++.|.+.|. ++.|+.+..
T Consensus        19 k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~   52 (182)
T d1vi2a1          19 KTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRD   52 (182)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSS
T ss_pred             CEEEEECCcHHHHHHHHHHhhcCCceEeeeccch
Confidence            479999999999999999999995 799998853

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=90.04  E-value=0.14  Score=38.20  Aligned_cols=32  Identities=19%  Similarity=0.178  Sum_probs=27.5

Q ss_pred             cEEEECCCchHHHHHHhhhhCC-CeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~   37 (342)
                      .|+|+|+|..|+.++..++..| .+|++++.++
T Consensus        31 ~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~   63 (175)
T d1cdoa2          31 TCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNP   63 (175)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSCG
T ss_pred             EEEEEecCCccchHHHHHHHHhhchheeecchH
Confidence            4889999999999999999988 5788888753

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=89.89  E-value=0.086  Score=38.65  Aligned_cols=27  Identities=22%  Similarity=0.155  Sum_probs=24.1

Q ss_pred             CCCcccEEEECC-CchHHHHHHhhhhCC
Q 019351            1 MDEEYDVIVLGT-GLKECILSGLLSVDG   27 (342)
Q Consensus         1 m~~~~DViIiG~-GiaGl~aA~~L~~~G   27 (342)
                      |.+..+|.|||| |..|.++|+.|+..+
T Consensus         1 m~~p~KV~IiGA~G~VG~~~a~~l~~~~   28 (154)
T d1y7ta1           1 MKAPVRVAVTGAAGQIGYSLLFRIAAGE   28 (154)
T ss_dssp             CCCCEEEEESSTTSHHHHHHHHHHHTTT
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHHhcc
Confidence            776679999996 999999999999875

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.77  E-value=0.097  Score=39.16  Aligned_cols=32  Identities=16%  Similarity=0.110  Sum_probs=26.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCe-EEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLK-VLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~-V~vlE~~   36 (342)
                      -.|+|+|+|..|+.++..+...|.+ |.+.+.+
T Consensus        30 ~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~   62 (174)
T d1f8fa2          30 SSFVTWGAGAVGLSALLAAKVCGASIIIAVDIV   62 (174)
T ss_dssp             CEEEEESCSHHHHHHHHHHHHHTCSEEEEEESC
T ss_pred             CEEEEeCCCHHHhhhhhcccccccceeeeeccH
Confidence            3699999999999999999888965 5566653

>d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.26  E-value=0.15  Score=37.42  Aligned_cols=47  Identities=17%  Similarity=0.118  Sum_probs=34.3

Q ss_pred             HHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEeCCc--EEEcCEEEECCCC
Q 019351          237 AFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGE--TAKCKKVVCDPSY  287 (342)
Q Consensus       237 ~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~--~~~a~~vI~~~~~  287 (342)
                      .+...++..|++++.++.|.+|+.  ++ + .+..+|+  ++.||.||+|+|.
T Consensus       113 ~~~~~~~~~gv~~~~~~~v~~i~~--~g-v-~~~~~g~e~~i~aD~Vv~A~Gq  161 (162)
T d1ps9a2         113 IHRTTLLSRGVKMIPGVSYQKIDD--DG-L-HVVINGETQVLAVDNVVICAGQ  161 (162)
T ss_dssp             HHHHHHHHTTCEEECSCEEEEEET--TE-E-EEEETTEEEEECCSEEEECCCE
T ss_pred             HHHHHHhhCCeEEEeeeEEEEEcC--CC-C-EEecCCeEEEEECCEEEECCCC
Confidence            345566788999999999999852  34 2 2344444  5899999999873

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=89.16  E-value=0.19  Score=38.12  Aligned_cols=49  Identities=18%  Similarity=0.216  Sum_probs=35.1

Q ss_pred             HHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-CCc--EEEcCEEEECCCCCC
Q 019351          240 RLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-EGE--TAKCKKVVCDPSYLP  289 (342)
Q Consensus       240 ~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~g~--~~~a~~vI~~~~~~~  289 (342)
                      +.+++.|+++++++.|++|+.+ ++.+..... +|+  ++.+|.+|+++|..+
T Consensus        64 ~~l~~~gi~v~~~~~V~~i~~~-~~~v~~~~~~~g~~~~~~~D~li~a~G~~~  115 (198)
T d1nhpa1          64 EKMESRGVNVFSNTEITAIQPK-EHQVTVKDLVSGEERVENYDKLIISPGAVP  115 (198)
T ss_dssp             HHHHHTTCEEEETEEEEEEETT-TTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred             HHHHHCCcEEEEeeceeeEeec-cccceeeecccccccccccceeeEeeccee
Confidence            4445679999999999999865 444332222 343  578999999998654

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.03  E-value=0.2  Score=31.75  Aligned_cols=32  Identities=25%  Similarity=0.249  Sum_probs=29.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|.|+|||=-|-..+....+.|++|.+++..+
T Consensus         3 ~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2           3 QVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             EEEEEBCSHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             EEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            48999999999999999999999999999753

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=88.95  E-value=0.13  Score=38.34  Aligned_cols=32  Identities=19%  Similarity=0.154  Sum_probs=29.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|+|+|+|=++-++++.|.+.+.+|.|+-|.
T Consensus        19 k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~   50 (171)
T d1p77a1          19 QHVLILGAGGATKGVLLPLLQAQQNIVLANRT   50 (171)
T ss_dssp             CEEEEECCSHHHHTTHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCcHHHHHHHHHHcccCceeeeccch
Confidence            47999999999999999999988999999775

>d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains
species: Escherichia coli [TaxId: 562]

Probab=88.90  E-value=0.28  Score=34.25  Aligned_cols=33  Identities=21%  Similarity=0.460  Sum_probs=29.0

Q ss_pred             ccEEEECCCc-----------hHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGL-----------KECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~Gi-----------aGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -+|+|||+|.           ++.-|+..|.+.|++++++--++
T Consensus         8 kkvlilGsGp~~IGq~~EfDy~~~~a~~alke~g~~~iliN~NP   51 (127)
T d1a9xa3           8 KSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVINVNSNP   51 (127)
T ss_dssp             CEEEEECCCSCBTTBCTHHHHHHHHHHHHHHHHTCEEEEECSCT
T ss_pred             CEEEEECCCcCcccccchhHHHHHHHHHHHHHcCCeEEEecCch
Confidence            5799999985           78889999999999999997763

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=88.81  E-value=0.18  Score=37.71  Aligned_cols=30  Identities=17%  Similarity=0.329  Sum_probs=27.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDR   35 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~   35 (342)
                      -+|+|+|+|-++-++++.|++.| +|.|+-|
T Consensus        19 k~vlIlGaGG~arai~~aL~~~~-~i~I~nR   48 (177)
T d1nvta1          19 KNIVIYGAGGAARAVAFELAKDN-NIIIANR   48 (177)
T ss_dssp             CEEEEECCSHHHHHHHHHHTSSS-EEEEECS
T ss_pred             CEEEEECCcHHHHHHHHHHcccc-ceeeehh
Confidence            47999999999999999998887 8999976

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=88.50  E-value=0.21  Score=37.23  Aligned_cols=31  Identities=19%  Similarity=0.186  Sum_probs=27.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDG-LKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~   36 (342)
                      -|+|+|+|-.|++++..++..| .+|++.+.+
T Consensus        31 tVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~   62 (176)
T d2jhfa2          31 TCAVFGLGGVGLSVIMGCKAAGAARIIGVDIN   62 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCSEEEEECSC
T ss_pred             EEEEECCCCcHHHHHHHHHHcCCceEEeecCc
Confidence            3899999999999999999998 688888875

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=88.35  E-value=0.17  Score=37.74  Aligned_cols=31  Identities=13%  Similarity=0.110  Sum_probs=27.7

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      .|+|+|+|..|+.++..++..|. +|++.|.+
T Consensus        30 ~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~   61 (174)
T d1p0fa2          30 TCAVFGLGGVGFSAIVGCKAAGASRIIGVGTH   61 (174)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             EEEEECCCchhHHHHHHHHHcCCceeeccCCh
Confidence            48999999999999999999995 78888875

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.34  E-value=0.22  Score=37.74  Aligned_cols=32  Identities=28%  Similarity=0.346  Sum_probs=28.3

Q ss_pred             ccEEEEC-CCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLG-TGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG-~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -.|+|.| +|-.|..+|..|+++|.+|+++.++
T Consensus        24 K~vlItGasgGIG~~ia~~la~~G~~V~~~~r~   56 (191)
T d1luaa1          24 KKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRK   56 (191)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CEEEEECCCHHHHHHHHHHHHhhccchhhcccc
Confidence            3578888 5888999999999999999999886

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=88.03  E-value=0.16  Score=37.81  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=27.6

Q ss_pred             ccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~   37 (342)
                      -.|+|+|+|..|+.++..+...| ..|++.+.++
T Consensus        34 ~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~   67 (172)
T d1h2ba2          34 AYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKE   67 (172)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSH
T ss_pred             CEEEEeCCChHHHHHHHHHHhhcCcccccccchh
Confidence            35899999999999999988888 5778888753

>d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.78  E-value=0.25  Score=38.55  Aligned_cols=32  Identities=19%  Similarity=0.231  Sum_probs=28.0

Q ss_pred             ccEEEECCCchHHHHHHhhhh--------------------CC-CeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSV--------------------DG-LKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~--------------------~G-~~V~vlE~~   36 (342)
                      -+|+|||+|-.++=||..|.+                    .| .+|.++.++
T Consensus        40 k~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~g~~~V~iv~RR   92 (225)
T d1cjca1          40 DTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRR   92 (225)
T ss_dssp             SEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSS
T ss_pred             ceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhccCCCeEEEEEEc
Confidence            479999999999999999988                    46 689999876

>d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.32  E-value=0.29  Score=37.84  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=26.9

Q ss_pred             ccEEEECCCchHHHHHHhhh--------------------hCC-CeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLS--------------------VDG-LKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~--------------------~~G-~~V~vlE~~   36 (342)
                      -+|+|||+|-.++=+|..|.                    +.| .+|.++-++
T Consensus        40 k~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~~~~~V~iv~RR   92 (216)
T d1lqta1          40 ARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRR   92 (216)
T ss_dssp             SEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSS
T ss_pred             ceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhcCCceEEEEEEC
Confidence            47999999999999998776                    567 579999775

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=86.22  E-value=0.34  Score=37.04  Aligned_cols=32  Identities=28%  Similarity=0.379  Sum_probs=29.4

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ..|+|-|-|-.|..+|..|++.|.+|++.|-.
T Consensus        28 k~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          28 LTVLVQGLGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEecch
Confidence            46999999999999999999999999998863

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.19  E-value=0.6  Score=33.89  Aligned_cols=45  Identities=13%  Similarity=-0.023  Sum_probs=34.8

Q ss_pred             HHHcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          242 SAVYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       242 ~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      .+..|+++++++.|+.++..  .+  .+..+++++.+|.+|+|+|..+.
T Consensus        62 ~~~~~v~~~~~~~v~~i~~~--~~--~~~~~~~~i~~D~li~a~G~~~~  106 (167)
T d1xhca1          62 YRKRGIEIRLAEEAKLIDRG--RK--VVITEKGEVPYDTLVLATGAPNV  106 (167)
T ss_dssp             HHHHTEEEECSCCEEEEETT--TT--EEEESSCEEECSEEEECCCEECC
T ss_pred             HHhccceeeeeccccccccc--cc--cccccccccccceeEEEEEecCC
Confidence            34569999999999998643  33  35568889999999999987653

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=86.19  E-value=0.26  Score=36.09  Aligned_cols=33  Identities=15%  Similarity=0.040  Sum_probs=30.9

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -.++|+|=|..|-.+|.+|+..|.+|+|.|..+
T Consensus        24 k~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DP   56 (163)
T d1v8ba1          24 KIVVICGYGDVGKGCASSMKGLGARVYITEIDP   56 (163)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             CEEEEecccccchhHHHHHHhCCCEEEEEecCc
Confidence            369999999999999999999999999999974

>d1ek6a_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.92  E-value=0.53  Score=38.91  Aligned_cols=38  Identities=24%  Similarity=0.109  Sum_probs=32.4

Q ss_pred             CCCcccEEEECC-CchHHHHHHhhhhCCCeEEEEcCCCCCC
Q 019351            1 MDEEYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRNDYYG   40 (342)
Q Consensus         1 m~~~~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~~~G   40 (342)
                      |.+  +|+|.|| |..|...+..|.++|++|+++|......
T Consensus         1 M~k--KILITG~tGfIGs~lv~~Ll~~g~~V~~ld~~~~~~   39 (346)
T d1ek6a_           1 MAE--KVLVTGGAGYIGSHTVLELLEAGYLPVVIDNFHNAF   39 (346)
T ss_dssp             CCS--EEEEETTTSHHHHHHHHHHHHTTCCEEEEECSSSSC
T ss_pred             CCC--eEEEECCCcHHHHHHHHHHHHCcCEEEEEECCCccc
Confidence            665  6999986 9999999999999999999999755443

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=85.56  E-value=0.38  Score=35.19  Aligned_cols=32  Identities=28%  Similarity=0.359  Sum_probs=28.2

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      ..|+|||+|-.|-.+|..|...|. +|+|.=|.
T Consensus        25 ~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt   57 (159)
T d1gpja2          25 KTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRT   57 (159)
T ss_dssp             CEEEEESCCHHHHHHHHHHHHHCCSEEEEECSS
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCc
Confidence            469999999999999999999996 68888653

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=85.49  E-value=0.32  Score=35.89  Aligned_cols=31  Identities=13%  Similarity=0.224  Sum_probs=27.2

Q ss_pred             cEEEEC-CCchHHHHHHhhhhCC-CeEEEEcCC
Q 019351            6 DVIVLG-TGLKECILSGLLSVDG-LKVLHMDRN   36 (342)
Q Consensus         6 DViIiG-~GiaGl~aA~~L~~~G-~~V~vlE~~   36 (342)
                      .|+|+| +|..|+.++..+...| .+|++.+.+
T Consensus        30 ~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~   62 (170)
T d1jvba2          30 TLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVR   62 (170)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred             EEEEEeccccceeeeeecccccccccccccccc
Confidence            599999 5999999999888888 689999875

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=85.46  E-value=0.83  Score=34.06  Aligned_cols=38  Identities=26%  Similarity=0.225  Sum_probs=33.0

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCCeEEEEcCCCCCCCc
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGE   42 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~~GG~   42 (342)
                      -.|.|||.|..|-..|..|..-|.+|.++++...-+..
T Consensus        43 k~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~~~   80 (181)
T d1qp8a1          43 EKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEGPW   80 (181)
T ss_dssp             CEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCSSS
T ss_pred             ceEEEeccccccccceeeeeccccccccccccccccce
Confidence            35999999999999999999999999999987654443

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=84.98  E-value=0.39  Score=35.72  Aligned_cols=44  Identities=14%  Similarity=0.106  Sum_probs=34.3

Q ss_pred             HcCcEEEcCCccceEEEcCCCcEEEEEeCCcEEEcCEEEECCCCCCc
Q 019351          244 VYGGTYMLNKPECKVEFDEEGKVVGVTSEGETAKCKKVVCDPSYLPN  290 (342)
Q Consensus       244 ~~G~~i~~~~~V~~i~~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~  290 (342)
                      ..++++++++.|+++..+ ..  .....+|+++.+|.||+|+|..|.
T Consensus        67 ~~~i~~~~~~~v~~i~~~-~~--~~~~~~g~~~~~D~vi~a~G~~p~  110 (183)
T d1d7ya1          67 APEVEWLLGVTAQSFDPQ-AH--TVALSDGRTLPYGTLVLATGAAPR  110 (183)
T ss_dssp             STTCEEEETCCEEEEETT-TT--EEEETTSCEEECSEEEECCCEEEC
T ss_pred             cCCeEEEEeccccccccc-cc--eeEecCCcEeeeeeEEEEEEEEcc
Confidence            458999999999998754 33  233458899999999999997653

>d1fjha_ c.2.1.2 (A:) 3-alpha-hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha-hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=84.88  E-value=0.44  Score=37.57  Aligned_cols=31  Identities=16%  Similarity=0.312  Sum_probs=24.7

Q ss_pred             EEEECCC-chHHHHHHhhhhCCCeEEEEcCCC
Q 019351            7 VIVLGTG-LKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         7 ViIiG~G-iaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      |+|.||+ =.|..+|..|+++|.+|++.++++
T Consensus         4 vlITGas~GIG~aiA~~la~~Ga~V~~~~~~~   35 (257)
T d1fjha_           4 IVISGCATGIGAATRKVLEAAGHQIVGIDIRD   35 (257)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence            4555654 358899999999999999998863

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=84.57  E-value=0.35  Score=33.85  Aligned_cols=31  Identities=16%  Similarity=0.184  Sum_probs=26.2

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      +|+|+|.|-.|..+|..|.  |..|.|+|..+.
T Consensus         2 HivI~G~g~~g~~l~~~L~--~~~i~vi~~d~~   32 (129)
T d2fy8a1           2 HVVICGWSESTLECLRELR--GSEVFVLAEDEN   32 (129)
T ss_dssp             CEEEESCCHHHHHHHHTSC--GGGEEEEESCTT
T ss_pred             EEEEECCCHHHHHHHHHHc--CCCCEEEEcchH
Confidence            5899999999999999995  567888887643

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=84.55  E-value=0.52  Score=38.15  Aligned_cols=30  Identities=20%  Similarity=0.145  Sum_probs=24.6

Q ss_pred             EEEEC-CCchHHHHHHhhhhCCCeEEEEcCC
Q 019351            7 VIVLG-TGLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         7 ViIiG-~GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ++|.| +|-.|..+|..|+++|.+|++.+++
T Consensus        28 alITGas~GIG~aiA~~la~~Ga~Vii~~r~   58 (294)
T d1w6ua_          28 AFITGGGTGLGKGMTTLLSSLGAQCVIASRK   58 (294)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            45555 4556899999999999999999885

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=84.32  E-value=0.27  Score=35.79  Aligned_cols=33  Identities=21%  Similarity=0.224  Sum_probs=25.5

Q ss_pred             CcccEEEECC-CchHHHHHHhhhhCCC-------eEEEEcC
Q 019351            3 EEYDVIVLGT-GLKECILSGLLSVDGL-------KVLHMDR   35 (342)
Q Consensus         3 ~~~DViIiG~-GiaGl~aA~~L~~~G~-------~V~vlE~   35 (342)
                      +..+|+|||| |..|.++|+.|+..+.       ...++|.
T Consensus         2 ~p~KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~   42 (154)
T d5mdha1           2 EPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDI   42 (154)
T ss_dssp             CCEEEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECC
T ss_pred             CceEEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecC
Confidence            3468999995 9999999999987542       3555655

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.79  E-value=0.45  Score=37.15  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=28.0

Q ss_pred             cEEEECCCch-HHHHHHhhhhCCCeEEEEcCCCC
Q 019351            6 DVIVLGTGLK-ECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         6 DViIiG~Gia-Gl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      +|+|.||+-. |...|..|+++|++|++++++..
T Consensus         4 kVlITGas~GIG~aia~~l~~~G~~V~~~~~~~~   37 (235)
T d1ooea_           4 KVIVYGGKGALGSAILEFFKKNGYTVLNIDLSAN   37 (235)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSCC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence            5889988654 89999999999999999988643

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.36  E-value=0.45  Score=40.92  Aligned_cols=33  Identities=27%  Similarity=0.505  Sum_probs=30.1

Q ss_pred             ccEEEECCCchHHHHHHhhhhCCC-eEEEEcCCC
Q 019351            5 YDVIVLGTGLKECILSGLLSVDGL-KVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~~   37 (342)
                      .+|+|||+|-.|.-+|..|+..|. +++|+|...
T Consensus        38 ~kVlvvG~GglG~ei~k~L~~~Gvg~i~lvD~D~   71 (426)
T d1yovb1          38 CKVLVIGAGGLGCELLKNLALSGFRQIHVIDMDT   71 (426)
T ss_dssp             CCEEEECSSTTHHHHHHHHHTTTCCCEEEECCCB
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCCeEEEEECCC
Confidence            479999999999999999999995 899999854

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=83.27  E-value=0.49  Score=39.10  Aligned_cols=31  Identities=26%  Similarity=0.277  Sum_probs=28.1

Q ss_pred             cEEEECC-CchHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +|+|+|| |..|...+..|.++|++|+++++-
T Consensus         2 KiLItG~tGfIG~~l~~~L~~~g~~V~~~d~~   33 (338)
T d1udca_           2 RVLVTGGSGYIGSHTCVQLLQNGHDVIILDNL   33 (338)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEECC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCcCEEEEEECC
Confidence            5899987 889999999999999999999864

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.18  E-value=0.61  Score=36.63  Aligned_cols=31  Identities=13%  Similarity=0.144  Sum_probs=25.8

Q ss_pred             EEEECCCc-hHHHHHHhhhhCCCeEEEEcCCC
Q 019351            7 VIVLGTGL-KECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         7 ViIiG~Gi-aGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      ++|.||+- .|..+|..|+++|++|++.+++.
T Consensus         8 alITGas~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1           8 AVITGGASGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            56777765 38899999999999999999864

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=82.97  E-value=0.55  Score=36.28  Aligned_cols=34  Identities=29%  Similarity=0.355  Sum_probs=30.3

Q ss_pred             cccEEEECCCchHHHHHHhhhhCC-CeEEEEcCCC
Q 019351            4 EYDVIVLGTGLKECILSGLLSVDG-LKVLHMDRND   37 (342)
Q Consensus         4 ~~DViIiG~GiaGl~aA~~L~~~G-~~V~vlE~~~   37 (342)
                      +..|+|.|+|-+|+..|..|.+.| .++.++|+..
T Consensus        26 d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~G   60 (222)
T d1vl6a1          26 EVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKG   60 (222)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTE
T ss_pred             hcEEEEEChHHHHHHHHHHHHHhcccceEeeccee
Confidence            468999999999999999999988 6799999973

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=82.86  E-value=2.5  Score=29.09  Aligned_cols=53  Identities=15%  Similarity=0.018  Sum_probs=37.9

Q ss_pred             hHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEEe-C---C---cEEEcCEEEECCC
Q 019351          233 ELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVTS-E---G---ETAKCKKVVCDPS  286 (342)
Q Consensus       233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~~-~---g---~~~~a~~vI~~~~  286 (342)
                      .+.+.+.+..+..++.++.++.|.+|.-+ +.++.+|+. +   +   +++.+|.|+++.|
T Consensus        67 ~~~~~~~~~~~~~~i~~~~~~~v~~i~G~-~~~v~~v~l~~~~~~e~~~~l~~dgvFv~iG  126 (126)
T d1trba2          67 ILIKRLMDKVENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDVAGLFVAIG  126 (126)
T ss_dssp             HHHHHHHHHHHTSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEECSEEEECSC
T ss_pred             HHHHHHHHhhcccceeEecceEEEEEECC-CCceEEEEEEECCCCceEEEEECCEEEEEeC
Confidence            34455555555668999999999999876 556777764 2   1   4588999988764

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=82.14  E-value=1.1  Score=28.97  Aligned_cols=32  Identities=13%  Similarity=0.036  Sum_probs=26.4

Q ss_pred             cEEEECCCchHHHH-HHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGLKECIL-SGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~GiaGl~a-A~~L~~~G~~V~vlE~~~   37 (342)
                      +|=+||-|=+|+++ |..|.++|++|..-|...
T Consensus         3 ~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~   35 (89)
T d1j6ua1           3 KIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEE   35 (89)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence            56778888888865 888999999999999753

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.64  E-value=0.73  Score=36.24  Aligned_cols=30  Identities=20%  Similarity=0.166  Sum_probs=24.9

Q ss_pred             EEEECCCc-hHHHHHHhhhhCCCeEEEEcCC
Q 019351            7 VIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         7 ViIiG~Gi-aGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ++|.||+- .|...|..|+++|.+|++.+++
T Consensus        10 ~lITGas~GIG~~ia~~la~~G~~V~l~~r~   40 (244)
T d1yb1a_          10 VLITGAGHGIGRLTAYEFAKLKSKLVLWDIN   40 (244)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            45557766 4899999999999999999885

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.43  E-value=0.81  Score=35.66  Aligned_cols=32  Identities=16%  Similarity=0.055  Sum_probs=27.5

Q ss_pred             cEEEECCCc-hHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGL-KECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~Gi-aGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      .|+|.||+- .|..+|..|+++|.+|.++++..
T Consensus         4 ~vlITGas~GIG~a~a~~l~~~G~~V~~~~~~~   36 (236)
T d1dhra_           4 RVLVYGGRGALGSRCVQAFRARNWWVASIDVVE   36 (236)
T ss_dssp             EEEEETTTSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             EEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            588999855 59999999999999999998754

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=81.34  E-value=0.85  Score=33.80  Aligned_cols=33  Identities=15%  Similarity=0.140  Sum_probs=25.4

Q ss_pred             CcccEEEECC-CchHHHHHHhhhhCCC-------eEEEEcC
Q 019351            3 EEYDVIVLGT-GLKECILSGLLSVDGL-------KVLHMDR   35 (342)
Q Consensus         3 ~~~DViIiG~-GiaGl~aA~~L~~~G~-------~V~vlE~   35 (342)
                      +..+|.|+|| |-.|-++|+.|++...       .+.++|.
T Consensus        23 ~~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di   63 (175)
T d7mdha1          23 KLVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGS   63 (175)
T ss_dssp             CCEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECC
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecC
Confidence            3467999996 9999999999997532       4556665

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=81.18  E-value=0.74  Score=36.70  Aligned_cols=30  Identities=23%  Similarity=0.144  Sum_probs=24.6

Q ss_pred             EEEECCCc-hHHHHHHhhhhCCCeEEEEcCC
Q 019351            7 VIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         7 ViIiG~Gi-aGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ++|.||+- .|..+|..|+++|.+|++.+++
T Consensus         9 alITGas~GIG~aia~~la~~Ga~V~i~~r~   39 (268)
T d2bgka1           9 AIITGGAGGIGETTAKLFVRYGAKVVIADIA   39 (268)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence            56667644 4889999999999999999875

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=81.09  E-value=0.58  Score=33.90  Aligned_cols=27  Identities=19%  Similarity=0.226  Sum_probs=24.1

Q ss_pred             cEEEECCCchHHHHHHhhhhCCCeEEE
Q 019351            6 DVIVLGTGLKECILSGLLSVDGLKVLH   32 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~~V~v   32 (342)
                      +|.+||-|..|...|..|.++|+.|..
T Consensus         2 kIg~IGlG~MG~~ma~~L~~~g~~~~~   28 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLARRFPTLVW   28 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHHTTSCEEEE
T ss_pred             eEEEEeHHHHHHHHHHHHHhCCCEEEE
Confidence            589999999999999999999987643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=81.03  E-value=0.68  Score=38.27  Aligned_cols=33  Identities=33%  Similarity=0.268  Sum_probs=29.6

Q ss_pred             ccEEEEC-CCchHHHHHHhhhhCCCeEEEEcCCC
Q 019351            5 YDVIVLG-TGLKECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         5 ~DViIiG-~GiaGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -+|+|.| +|..|..++..|.++|++|.++++..
T Consensus         9 KkILVTG~tGfIGs~lv~~Ll~~g~~V~~~~r~~   42 (356)
T d1rkxa_           9 KRVFVTGHTGFKGGWLSLWLQTMGATVKGYSLTA   42 (356)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence            3799999 58999999999999999999998853

>d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=80.97  E-value=2.4  Score=29.17  Aligned_cols=51  Identities=20%  Similarity=0.208  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHc-CcEEEcCCccceEEEcCCCcEEEEEe----CC--cEEEcCEEEECCC
Q 019351          235 PQAFARLSAVY-GGTYMLNKPECKVEFDEEGKVVGVTS----EG--ETAKCKKVVCDPS  286 (342)
Q Consensus       235 ~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~~v~~----~g--~~~~a~~vI~~~~  286 (342)
                      ...+.+.+.++ +++++++++|++|.-+ ++++.+++.    +|  .++.+|.|.++.|
T Consensus        68 ~~~~~~~~~~~~~I~v~~~~~v~~i~G~-~~~v~~v~l~~~~tge~~~l~vdgvFv~IG  125 (126)
T d1fl2a2          68 DQVLQDKLRSLKNVDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHNIELAGIFVQIG  125 (126)
T ss_dssp             CHHHHHHHHTCTTEEEESSEEEEEEEES-SSSEEEEEEEETTTCCEEEEECSEEEECSC
T ss_pred             ccccccccccccceeEEcCcceEEEEcc-ccceeeEEEEECCCCCEEEEECCEEEEEeC
Confidence            34455555554 5999999999999876 566776664    23  3689999988776

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.87  E-value=0.78  Score=36.34  Aligned_cols=30  Identities=27%  Similarity=0.343  Sum_probs=25.9

Q ss_pred             EEEECCCch-HHHHHHhhhhCCCeEEEEcCC
Q 019351            7 VIVLGTGLK-ECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         7 ViIiG~Gia-Gl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ++|.||+-. |..+|..|+++|.+|++.+++
T Consensus        13 ~lITGas~GIG~aiA~~la~~G~~Vv~~~r~   43 (257)
T d1xg5a_          13 ALVTGASGGIGAAVARALVQQGLKVVGCART   43 (257)
T ss_dssp             EEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            788887655 899999999999999999874

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=80.83  E-value=0.67  Score=36.76  Aligned_cols=32  Identities=19%  Similarity=0.242  Sum_probs=26.4

Q ss_pred             cEEEECCCc-hHHHHHHhhhhCCCeEEEEcCCC
Q 019351            6 DVIVLGTGL-KECILSGLLSVDGLKVLHMDRND   37 (342)
Q Consensus         6 DViIiG~Gi-aGl~aA~~L~~~G~~V~vlE~~~   37 (342)
                      -++|.||+- .|..+|..|+++|.+|++.+++.
T Consensus        11 ~alITGas~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_          11 TIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence            366667765 48999999999999999998864

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.82  E-value=0.79  Score=35.96  Aligned_cols=31  Identities=26%  Similarity=0.327  Sum_probs=26.0

Q ss_pred             cEEEECCCch-HHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGLK-ECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~Gia-Gl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -++|.||+-. |..+|..|+++|.+|++.+++
T Consensus         9 ~~lITGas~GIG~aia~~la~~G~~V~~~~r~   40 (244)
T d1pr9a_           9 RVLVTGAGKGIGRGTVQALHATGARVVAVSRT   40 (244)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHcCCEEEEEECC
Confidence            4677787654 889999999999999999875

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=80.75  E-value=0.8  Score=36.11  Aligned_cols=31  Identities=23%  Similarity=0.171  Sum_probs=25.8

Q ss_pred             cEEEECCCc-hHHHHHHhhhhCCCeEEEEcCC
Q 019351            6 DVIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         6 DViIiG~Gi-aGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      -++|.||+- .|..+|..|+++|.+|++.+++
T Consensus         7 ~~lITGas~GIG~aia~~la~~Ga~V~i~~r~   38 (251)
T d1vl8a_           7 VALVTGGSRGLGFGIAQGLAEAGCSVVVASRN   38 (251)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            367778754 4889999999999999999874

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=80.51  E-value=0.84  Score=37.71  Aligned_cols=33  Identities=18%  Similarity=0.214  Sum_probs=29.5

Q ss_pred             cccEEEECC-CchHHHHHHhhhhCCCeEEEEcCC
Q 019351            4 EYDVIVLGT-GLKECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         4 ~~DViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      +-.|+|+|| |..|...+..|.++|++|.++=|+
T Consensus         3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~   36 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHS   36 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECC
Confidence            457999996 999999999999999999999664

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.27  E-value=2.1  Score=33.97  Aligned_cols=58  Identities=12%  Similarity=0.179  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHcCcEEEcCCccceEEEcCCCcEEEEE-eCCc--EEEcCEEEECCCCCC
Q 019351          232 GELPQAFARLSAVYGGTYMLNKPECKVEFDEEGKVVGVT-SEGE--TAKCKKVVCDPSYLP  289 (342)
Q Consensus       232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~v~-~~g~--~~~a~~vI~~~~~~~  289 (342)
                      ..+...|.+.++..|..++.+..+..+...+++.+.... .+|+  +++||.||.|.|..+
T Consensus       103 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~~~i~a~~vVgADG~~S  163 (292)
T d1k0ia1         103 TEVTRDLMEAREACGATTVYQAAEVRLHDLQGERPYVTFERDGERLRLDCDYIAGCDGFHG  163 (292)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCEEEEEECTTSSSCEEEEEETTEEEEEECSEEEECCCTTC
T ss_pred             HHHHHHHHHHHHhCCCcEEEcceeeeeeeeccCceEEEEecCCcEEEEEeCEEEECCCCCC
Confidence            467788888888888888888877766554344443322 3554  578999999998765

>d1uaya_ c.2.1.2 (A:) Type II 3-hydroxyacyl-CoA dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=80.17  E-value=0.69  Score=35.93  Aligned_cols=32  Identities=19%  Similarity=0.147  Sum_probs=25.6

Q ss_pred             EEEECC-CchHHHHHHhhhhCCCeEEEEcCCCC
Q 019351            7 VIVLGT-GLKECILSGLLSVDGLKVLHMDRNDY   38 (342)
Q Consensus         7 ViIiG~-GiaGl~aA~~L~~~G~~V~vlE~~~~   38 (342)
                      ++|-|| +=.|..+|..|+++|.+|++.+++..
T Consensus         4 alITGas~GIG~aiA~~la~~Ga~V~i~~~~~~   36 (241)
T d1uaya_           4 ALVTGGASGLGRAAALALKARGYRVVVLDLRRE   36 (241)
T ss_dssp             EEEETTTSHHHHHHHHHHHHHTCEEEEEESSCC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECCcc
Confidence            555566 34588999999999999999998653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=80.16  E-value=0.66  Score=34.15  Aligned_cols=31  Identities=23%  Similarity=0.201  Sum_probs=25.6

Q ss_pred             cEEEECCCchHHHHHHhhhhCCC-eEEEEcCC
Q 019351            6 DVIVLGTGLKECILSGLLSVDGL-KVLHMDRN   36 (342)
Q Consensus         6 DViIiG~GiaGl~aA~~L~~~G~-~V~vlE~~   36 (342)
                      .|+|+|+|-.|+.++..++..|. +|++.+.+
T Consensus        31 tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~   62 (176)
T d2fzwa2          31 VCAVFGLGGVGLAVIMGCKVAGASRIIGVDIN   62 (176)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCSEEEEECSC
T ss_pred             EEEEecchhHHHHHHHHHHHHhcCceEEEccc
Confidence            48999999999999999999995 67766653

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=80.11  E-value=0.86  Score=36.12  Aligned_cols=30  Identities=23%  Similarity=0.254  Sum_probs=25.1

Q ss_pred             EEEECCCc-hHHHHHHhhhhCCCeEEEEcCC
Q 019351            7 VIVLGTGL-KECILSGLLSVDGLKVLHMDRN   36 (342)
Q Consensus         7 ViIiG~Gi-aGl~aA~~L~~~G~~V~vlE~~   36 (342)
                      ++|.||+- .|..+|..|+++|.+|++.+++
T Consensus         8 alITGas~GIG~aia~~la~~Ga~V~~~~r~   38 (260)
T d1zema1           8 CLVTGAGGNIGLATALRLAEEGTAIALLDMN   38 (260)
T ss_dssp             EEEETTTSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             EEEeCCCCHHHHHHHHHHHHCCCEEEEEECC
Confidence            56667754 4889999999999999999874