Citrus Sinensis ID: 019380

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccEEEEcccccEEEEEEEEEEcccccEEEEEcccccccccccccccccccHHcccccccHHHHHHHHHHHHcccccccccccccccccEEEEEccHHHHHHHccccccccEEEcccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHcHHHHHHHHHHccccHHHHccEEcccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHcccHHHHHHccccHHHHHHccccccccccccccccccccccccccccEEEEEcEEccccccccccEEEEEEEEEccccEEEEEEEcccccEEEccEEEccccHHHHcccccHHHHHHHHHHHHHcccccEEEEccccccEEEEEccHHHHHHHHHccccccccccccccccHHccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHccHHHHHHcccccEEEEEcc
Coil and Loop (DISEMBL)
mdteaelpkrstarhkcVACYKQFKRKDHLIEHMKIsyhsvhqpkcaVCQKLSKSFESLREhltgplskahcsgifsdrgcnlcmnifdspsslikhkeacslsapvpfkisgaidekrtcrgpkavamdcemvgggsngtlDLCARVclvdedenvifhtyvqpqlpvtnyryevtglteediknamplkEVKDKILEILNNGESTGRLMLDDGKARLLVGHGlehdldslrmnypdhmlrdtakyrplmktnlvsHSLKYLTRTYlgydiqsgvhdpyedCVSVMRLYKRFRRQDHQVeeignqnttgsfdsykykelekmspnelyqisksdyrcwcld
Flexible Loop (DISEMBL)
mdteaelpkrstarhkcvacYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLsapvpfkisgaideKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIfhtyvqpqlpvtnYRYEVTGLteediknamplkeVKDKILEILNNGESTGRLMLDDGKARLLVGHGLehdldslrmnYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDhqveeignqnttgsfdsYKYKELEkmspnelyqisksdyrcwCLD
Low Complexity Region (SEG)
MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD
Disordered region (IsUnstruct)
**************HKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH*****************************LYQISKSDYRCWCL*
Disordered Region (DISOPRED)
*****************VACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSK***********CNLCMNIFDSPSSLI*****************************KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD**********************************SKSDYRCWCLD
Disordered Region (DISEMBL)
**************HKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD
Disordered Region (DISPRO)
***********TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSP******************************RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEI****************LEKMSPNELYQISKSDYRCWCLD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
Q08237	289	RNA exonuclease 4 OS=Sacc	yes	no	0.523	0.619	0.345	2e-25
Q6PAQ4	432	RNA exonuclease 4 OS=Mus	yes	no	0.461	0.365	0.352	2e-24
Q6FQA0	263	RNA exonuclease 4 OS=Cand	yes	no	0.447	0.581	0.366	4e-24
Q9GZR2	422	RNA exonuclease 4 OS=Homo	yes	no	0.441	0.357	0.363	4e-24
Q4IEV5	319	RNA exonuclease 4 OS=Gibb	yes	no	0.456	0.489	0.356	8e-24
Q6BIK6	272	RNA exonuclease 4 OS=Deba	yes	no	0.488	0.613	0.331	1e-23
Q91560	421	RNA exonuclease 4 OS=Xeno	N/A	no	0.444	0.361	0.371	2e-23
Q6CMT3	294	RNA exonuclease 4 OS=Kluy	yes	no	0.464	0.540	0.354	5e-23
P0CQ44	408	RNA exonuclease 4 OS=Cryp	yes	no	0.456	0.382	0.339	5e-23
P0CQ45	408	RNA exonuclease 4 OS=Cryp	N/A	no	0.456	0.382	0.339	5e-23

>sp|Q08237|REXO4_YEAST RNA exonuclease 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=REX4 PE=1 SV=1

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 68/197 (34%), Positives = 105/197 (53%), Gaps = 18/197 (9%)

Query: 100 ACSLSAPVPFKIS--GAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENV 157
           + ++  PV   IS    I+  ++    K +AMDCE VG G  G     AR+ +V+   +V
Sbjct: 93  STTIKEPVKVGISEDTRINSNKSKEIGKYIAMDCEFVGVGPEGKESALARISIVNYFGHV 152

Query: 158 IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKA 217
           +   +V+P+  V  +R  V+G+  E +KNA+  KE + K  +IL              + 
Sbjct: 153 VLDEFVKPREKVVEWRTWVSGIKPEHMKNAITFKEAQKKTADIL--------------EG 198

Query: 218 RLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMK--TNLVSHSLKYLTRTYLGYDIQSG 275
           R+LVGH L+HDL++L +++P  +LRDT+++ P  K      + SLK LTR  L   IQ G
Sbjct: 199 RILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKTPSLKKLTREVLKISIQEG 258

Query: 276 VHDPYEDCVSVMRLYKR 292
            H   ED  + M LYK+
Sbjct: 259 EHSSVEDARATMLLYKK 275

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 3EC: .EC: 1EC: .EC: -EC: .EC: -

>sp|Q6PAQ4|REXO4_MOUSE RNA exonuclease 4 OS=Mus musculus GN=Rexo4 PE=2 SV=2

 Score =  113 bits (282), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/173 (35%), Positives = 94/173 (54%), Gaps = 15/173 (8%)

Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
           KA+A+DCEMVG G  G   + ARV +V++    ++  YV+P  PVT+YR  V+G+  E++
Sbjct: 252 KALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL 311

Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
           K     + VK ++ E+L              K R+LVGH L +DL  L +++P   +RDT
Sbjct: 312 KQGEEFEVVKKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDT 357

Query: 245 AKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 296
            K++P   +      SLK L+   LG  +Q   H   +D  + MRLY   +R+
Sbjct: 358 QKFKPFRSRVKSGRPSLKRLSEKILGIRVQQAEHCSIQDAQAAMRLYVMVKRE 410

May function as an exonuclease.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6FQA0|REXO4_CANGA RNA exonuclease 4 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=REX4 PE=3 SV=1

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 62/169 (36%), Positives = 96/169 (56%), Gaps = 16/169 (9%)

Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
           K +AMDCE VG G  G     ARV LV+   NV+   +V+P+  VT++R  V+G+T + +
Sbjct: 94  KYIAMDCEFVGVGPEGKDSALARVSLVNFHGNVVLDIFVKPRETVTDWRTWVSGITPDHM 153

Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
           KNA+  K+ + ++ +IL              K ++LVGH ++HDL++L +++P   + DT
Sbjct: 154 KNAVSFKQAQQQLSDIL--------------KDKILVGHAVKHDLEALMLSHPKSKVIDT 199

Query: 245 AKYRPLMK--TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 291
           A++ P  +      S SLK L +  L  DIQSG H   ED  + M +YK
Sbjct: 200 ARHLPFRQKYAKGKSPSLKKLAKEILNMDIQSGQHSSVEDARATMLIYK 248

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q9GZR2|REXO4_HUMAN RNA exonuclease 4 OS=Homo sapiens GN=REXO4 PE=1 SV=2

 Score =  112 bits (280), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 61/168 (36%), Positives = 95/168 (56%), Gaps = 17/168 (10%)

Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
           +A+A+DCEMVG G  G   + ARV +V++    ++  YV+P  PVT+YR  V+G+  E++
Sbjct: 242 RALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL 301

Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
           K    L+ V+ ++ E+L              K R+LVGH L +DL  L +++P   +RDT
Sbjct: 302 KQGEELEVVQKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDT 347

Query: 245 AKYRPLMKTNLVS--HSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLY 290
            KY+P  K+ + S   SL+ L+   LG  +Q   H   +D  + MRLY
Sbjct: 348 QKYKPF-KSQVKSGRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLY 394

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q4IEV5|REXO4_GIBZE RNA exonuclease 4 OS=Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=REX4 PE=3 SV=1

 Score =  111 bits (277), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 61/171 (35%), Positives = 99/171 (57%), Gaps = 15/171 (8%)

Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
           K +A+DCEMVG G  G     ARV +VD     I+ +YV+P+  VTN+R  V+G++++ +
Sbjct: 132 KYIAIDCEMVGVGPGGHESALARVSIVDFHGVQIYDSYVKPKEKVTNWRTAVSGISQKSM 191

Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
           + A   +EV+ +I ++L              + R+LVGH L+HDL++L +++P   +RDT
Sbjct: 192 RFARDFEEVQAEIDKLL--------------RGRILVGHDLKHDLEALILSHPGKDIRDT 237

Query: 245 AKYRPLMK-TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFR 294
           AK+    K  N    SL+ L +  LG +IQ G H   ED  + M L+++ +
Sbjct: 238 AKFSGFKKYANGRKPSLRVLAQQLLGVEIQGGEHSSIEDARATMLLFRKHK 288

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Gibberella zeae (strain PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) (taxid: 229533)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6BIK6|REXO4_DEBHA RNA exonuclease 4 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=REX4 PE=3 SV=2

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 61/184 (33%), Positives = 103/184 (55%), Gaps = 17/184 (9%)

Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
           K +AMDCE VG G  GT    ARV +V+   + +F  +V+P+  VT++R  V+G+T + +
Sbjct: 98  KYLAMDCEFVGVGPEGTESALARVSIVNFYGHTVFDKFVKPRERVTDWRTWVSGVTPKHM 157

Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
             A+  +E +++  ++L              + R+LVGH + HDLD+L +++P   +RDT
Sbjct: 158 NEAISFQEAQNETSKLL--------------EGRILVGHAIHHDLDALFLSHPKSRIRDT 203

Query: 245 AKYRPLMKTNL-VSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEI 303
           ++Y+P    ++  + SLK L+  +L  DIQ   H   ED  + M L++  R++  Q   I
Sbjct: 204 SQYKPFRSISMGKTPSLKKLSSHFLKIDIQGSAHSSVEDARATMLLFRLHRKEFEQ--SI 261

Query: 304 GNQN 307
             QN
Sbjct: 262 RTQN 265

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q91560|REXO4_XENLA RNA exonuclease 4 OS=Xenopus laevis GN=rexo4 PE=2 SV=2

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 62/167 (37%), Positives = 89/167 (53%), Gaps = 15/167 (8%)

Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
           + VAMDCEMVG G +G   + ARV +V+     ++  YV+P   VT+YR  V+G+  ED+
Sbjct: 233 RTVAMDCEMVGVGMDGEESILARVSIVNLFGKCVYDKYVKPTERVTDYRTAVSGIRPEDV 292

Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
           K   P K V+ ++ EIL              + R LVGH + +DL  L +++P   +RDT
Sbjct: 293 KKGEPFKVVQKEVSEIL--------------RGRTLVGHAVHNDLKILFLDHPKKAIRDT 338

Query: 245 AKYRPL-MKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLY 290
            KY+P   K      SLK L    L   +Q+G H   +D  + MRLY
Sbjct: 339 QKYKPFKQKVKSGRPSLKLLCEKILNVKVQTGEHCSVQDAQAAMRLY 385

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|Q6CMT3|REXO4_KLULA RNA exonuclease 4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=REX4 PE=3 SV=1

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/175 (35%), Positives = 97/175 (55%), Gaps = 16/175 (9%)

Query: 119 RTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTG 178
           RT    K V+MDCE VG G +G     ARV +V+   NV+   +V+P+ PVT++R  V+G
Sbjct: 112 RTNGVGKYVSMDCEFVGVGPDGKDSALARVSIVNYYGNVVLDLFVRPKEPVTDWRTWVSG 171

Query: 179 LTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD 238
           +    + NA+  ++ + ++  +L              K R+LVGH + HDL +L +++P 
Sbjct: 172 IKPHHMANAVTQEDCQKQVSNVL--------------KGRILVGHSVHHDLTALMLSHPR 217

Query: 239 HMLRDTAKYRPLMK--TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 291
            M+RDT+++ P  +  +   + SLK LT+  L  DIQ G H   ED  + M LYK
Sbjct: 218 RMIRDTSRHMPFRQKYSEGKTPSLKKLTKEILQLDIQDGEHSSIEDARATMLLYK 272

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P0CQ44|REXO4_CRYNJ RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=REX4 PE=3 SV=1

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 93/171 (54%), Gaps = 15/171 (8%)

Query: 127 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 186
           +A+DCEMVG G NG  +  ARV +V+    VI  T+VQP+ PVT+YR  ++G+ + D+  
Sbjct: 133 LAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG 192

Query: 187 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 246
           A    EV  ++  +L++              ++L+GH +++DL  L + +P  + RDT K
Sbjct: 193 APQFDEVNKQVANLLHD--------------KILIGHAIDNDLKVLMLTHPGPLTRDTQK 238

Query: 247 YRPLMKTNLVSH-SLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 296
           Y+PL +        LK L+   LG  IQ+G H    D    M LY+  +++
Sbjct: 239 YKPLQEIAKNKRPGLKKLSELLLGVQIQTGAHSSVVDARVAMALYRLHKKE 289

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

>sp|P0CQ45|REXO4_CRYNB RNA exonuclease 4 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=REX4 PE=3 SV=1

 Score =  108 bits (270), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/171 (33%), Positives = 93/171 (54%), Gaps = 15/171 (8%)

Query: 127 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 186
           +A+DCEMVG G NG  +  ARV +V+    VI  T+VQP+ PVT+YR  ++G+ + D+  
Sbjct: 133 LAIDCEMVGVGPNGMENTLARVSIVNYHGAVILDTFVQPREPVTDYRTWISGVKQSDLLG 192

Query: 187 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 246
           A    EV  ++  +L++              ++L+GH +++DL  L + +P  + RDT K
Sbjct: 193 APQFDEVNKQVANLLHD--------------KILIGHAIDNDLKVLMLTHPGPLTRDTQK 238

Query: 247 YRPLMKTNLVSH-SLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 296
           Y+PL +        LK L+   LG  IQ+G H    D    M LY+  +++
Sbjct: 239 YKPLQEIAKNKRPGLKKLSELLLGVQIQTGAHSSVVDARVAMALYRLHKKE 289

Exoribonuclease involved in ribosome biosynthesis. Involved in the processing of ITS1, the internal transcribed spacer localized between the 18S and 5.8S rRNAs.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

EC: 3

EC: .

EC: 1

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
359807091	366	uncharacterized protein LOC100788682 [Gl	1.0	0.934	0.665	1e-138
356556710	366	PREDICTED: RNA exonuclease 4-like [Glyci	1.0	0.934	0.665	1e-138
255567670	365	exonuclease, putative [Ricinus communis]	1.0	0.936	0.662	1e-138
357454687	366	RNA exonuclease [Medicago truncatula] gi	0.994	0.928	0.641	1e-133
224068807	349	predicted protein [Populus trichocarpa]	0.970	0.951	0.668	1e-132
388501576	366	unknown [Medicago truncatula]	0.994	0.928	0.638	1e-132
296086710	341	unnamed protein product [Vitis vinifera]	0.891	0.894	0.646	1e-119
449449811	350	PREDICTED: RNA exonuclease 4-like [Cucum	0.961	0.94	0.578	1e-115
225452464	395	PREDICTED: apoptosis-enhancing nuclease-	0.956	0.827	0.553	1e-110
147810158	351	hypothetical protein VITISV_036419 [Viti	0.956	0.931	0.553	1e-110

>gi|359807091|ref|NP_001241345.1| uncharacterized protein LOC100788682 [Glycine max] gi|255641871|gb|ACU21204.1| unknown [Glycine max]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/359 (66%), Positives = 283/359 (78%), Gaps = 17/359 (4%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD EA+ P+    RHKC+ACYKQ+K+K+HLIEHMK SYHSVHQP+C VCQK  KSFESLR
Sbjct: 1   MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV------------P 108
           EHLTGPL +  CS IFS +GC LC+ +FDSP SLI H+E C LSAP              
Sbjct: 61  EHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIGHRETCRLSAPTCPGTSALPYIDSQ 120

Query: 109 FKISGAIDEKRTCRGPK-AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQL 167
           F    + DE     GP  AVA+DCEMVGGGS+G+L+LCARVCLVDEDE +IFHTYVQP++
Sbjct: 121 FDCQDSSDENHAGEGPGGAVAIDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEI 180

Query: 168 PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH 227
           PVTNYRY++TGLTEE +KNA+PLK+V++K+L+IL NGES G++ LD GKARLLVGH L H
Sbjct: 181 PVTNYRYDITGLTEEHLKNAIPLKKVREKLLQILQNGESIGKVRLDGGKARLLVGHDLAH 240

Query: 228 DLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVM 287
           DLD L+MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG HDPYEDC+SVM
Sbjct: 241 DLDCLKMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVM 300

Query: 288 RLYKRFRRQDHQVEEIG----NQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 342
           RLYKR R Q H  E+ G    + N  G  DS+  +EL+ ++P+ELY +S+SDY+CWCLD
Sbjct: 301 RLYKRIRSQLHPEEDHGTMTLSNNIVGMPDSWISRELDNLTPDELYAMSRSDYKCWCLD 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556710|ref|XP_003546666.1| PREDICTED: RNA exonuclease 4-like [Glycine max]

 Score =  496 bits (1278), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 239/359 (66%), Positives = 283/359 (78%), Gaps = 17/359 (4%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD EA+ P+    RHKC+ACYKQ+K+K+HLIEHMK SYHSVHQP+C VCQK  KSFESLR
Sbjct: 1   MDAEADPPQNPITRHKCLACYKQYKKKEHLIEHMKTSYHSVHQPRCGVCQKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV------------P 108
           EHLTGPL +  CS IFS +GC LC+ +FDSP SLI H++ C +SAP              
Sbjct: 61  EHLTGPLPRGICSKIFSQQGCQLCLALFDSPGSLIDHRKICRISAPTCPGTSALPYIDSQ 120

Query: 109 FKISGAIDEKRTCRGPK-AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQL 167
           F      DE     GP  AVAMDCEMVGGGS+G+L+LCARVCLVDEDE +IFHTYVQP++
Sbjct: 121 FDCQDFSDENHAGEGPGGAVAMDCEMVGGGSDGSLELCARVCLVDEDERLIFHTYVQPEI 180

Query: 168 PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH 227
           PVTNYRY++TGLTEE ++NAMPLKEV++K+L+IL+NGES G++ LD GKARLLVGH L H
Sbjct: 181 PVTNYRYDITGLTEEHLRNAMPLKEVREKLLQILHNGESIGKVRLDGGKARLLVGHDLAH 240

Query: 228 DLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVM 287
           DLD L+MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG HDPYEDC+SVM
Sbjct: 241 DLDCLKMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCISVM 300

Query: 288 RLYKRFRRQDHQVEEIG----NQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 342
           RLYKR R Q H  E+ G    + N  G  DS+  +EL+ ++P+ELY +S+SDY+CWCLD
Sbjct: 301 RLYKRIRSQLHPEEDHGTMTLSNNIVGMPDSWISRELDNLTPDELYAMSRSDYKCWCLD 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567670|ref|XP_002524814.1| exonuclease, putative [Ricinus communis] gi|223535998|gb|EEF37657.1| exonuclease, putative [Ricinus communis]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 237/358 (66%), Positives = 289/358 (80%), Gaps = 16/358 (4%)

Query: 1   MDTEAELPKRS-TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESL 59
           M ++ ++P ++ T R+KC ACYKQ+K+K+HL+EHM ISYHSVHQP+CAVCQK  KSFESL
Sbjct: 1   MASKPDIPTKTPTTRYKCCACYKQYKKKEHLVEHMIISYHSVHQPRCAVCQKHCKSFESL 60

Query: 60  REHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPF---------- 109
           R HL GPL+KA+CS +FS  GC+LC+ +FDSP+SLI+H+E C LS P  F          
Sbjct: 61  RAHLQGPLAKANCSRVFSHLGCDLCLKVFDSPNSLIRHREMCCLSTPSSFVKLQICMLGS 120

Query: 110 ---KISGAIDEKRTCRGP--KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQ 164
               I G +       G   KA+A+DCEMVGGGS+GTL+LCARVCLVDEDEN+IFH YVQ
Sbjct: 121 NDNYIGGGVIGSNDNIGGDVKAIAIDCEMVGGGSDGTLNLCARVCLVDEDENIIFHAYVQ 180

Query: 165 PQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG 224
           PQ+P+T+YRYEVTGLTEE +++AMPLKEV++KILEIL NGES G+  L  GKARLLVGH 
Sbjct: 181 PQIPITDYRYEVTGLTEEHLRDAMPLKEVQNKILEILYNGESVGKARLSGGKARLLVGHS 240

Query: 225 LEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCV 284
           L+HDLD LRM YPDH+LRDTAKYRPLMKTNL SHSLKYLT+TYLGY+IQ+G+HDPYEDCV
Sbjct: 241 LDHDLDCLRMFYPDHLLRDTAKYRPLMKTNLFSHSLKYLTQTYLGYNIQTGIHDPYEDCV 300

Query: 285 SVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 342
           +VMRLYKR R QDH+VE+ G +  +GSFDS K KELE M+ +ELY IS+S+Y+CWCLD
Sbjct: 301 AVMRLYKRMRGQDHEVEQSGLRGISGSFDSLKPKELESMTSDELYDISRSNYKCWCLD 358

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454687|ref|XP_003597624.1| RNA exonuclease [Medicago truncatula] gi|358344695|ref|XP_003636423.1| RNA exonuclease [Medicago truncatula] gi|217072104|gb|ACJ84412.1| unknown [Medicago truncatula] gi|355486672|gb|AES67875.1| RNA exonuclease [Medicago truncatula] gi|355502358|gb|AES83561.1| RNA exonuclease [Medicago truncatula] gi|388504350|gb|AFK40241.1| unknown [Medicago truncatula]

 Score =  479 bits (1233), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/360 (64%), Positives = 282/360 (78%), Gaps = 20/360 (5%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD E + P+  T RHKC ACYKQ+K+K++L+EHMK +YHS+HQPKC VC+K  KSFESLR
Sbjct: 1   MDNEEDPPEPPTKRHKCSACYKQYKKKEYLVEHMKTAYHSIHQPKCVVCEKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS-------- 112
           EHLTGPL+K  CS +FS  GC LC+  FDS +SL  H+E C L+APVP   +        
Sbjct: 61  EHLTGPLAKGLCSAVFSQYGCQLCLTRFDSHASLSDHRETCRLAAPVPLGTNEFPCTNIH 120

Query: 113 ----GAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 168
                + DE      P+A+AMDCEMVGGGS+G+L+LCARVCLVDEDEN+IFHTYV+PQ+P
Sbjct: 121 NNFLDSSDENDADCLPRAIAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQIP 180

Query: 169 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 228
           VTNYRY++TGLTEE +++ MPLKEV++KIL+IL NGES G++ LD GKARLLVGH L HD
Sbjct: 181 VTNYRYDITGLTEEHLQDGMPLKEVREKILQILYNGESIGKVRLDGGKARLLVGHDLAHD 240

Query: 229 LDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMR 288
           LD L M+YPDH++RDTAKYRPLMKTNLV +SLKYLTRTYLGYDIQ+G H+PYEDC+SVMR
Sbjct: 241 LDCLGMSYPDHLMRDTAKYRPLMKTNLVCYSLKYLTRTYLGYDIQTGTHNPYEDCISVMR 300

Query: 289 LYKRFRRQDHQVEEIGNQNTTGS------FDSYKYKELEKMSPNELYQISKSDYRCWCLD 342
           LYKR R Q H+  E G +  T S      FDS++ KEL+ ++P+ELY ISKSDYRCWCLD
Sbjct: 301 LYKRIRGQSHK--EKGYRTLTPSDNILDMFDSWRSKELDNLTPDELYAISKSDYRCWCLD 358

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068807|ref|XP_002302830.1| predicted protein [Populus trichocarpa] gi|222844556|gb|EEE82103.1| predicted protein [Populus trichocarpa]

 Score =  478 bits (1230), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 234/350 (66%), Positives = 279/350 (79%), Gaps = 18/350 (5%)

Query: 1   MDTEAELPKRS-TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESL 59
           MD EA+ P RS T RHKC ACYKQFK+K+HL+EHMKISYH+ HQPKC VCQK  KSFESL
Sbjct: 1   MDAEADPPTRSRTERHKCFACYKQFKKKEHLVEHMKISYHTPHQPKCGVCQKHCKSFESL 60

Query: 60  REHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAP-------VPFKIS 112
           R HLTGPLS+A CS  FS +GC+LC+ ++DSPSSL KH+E C LSAP       +PF  +
Sbjct: 61  RNHLTGPLSRAGCSRTFSAQGCDLCLKLYDSPSSLGKHREICHLSAPASLGTKILPF--A 118

Query: 113 GAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNY 172
           G++D K T +G KA+A++C +VGGG++G+LDLCARVCLVDEDEN+IFHTYVQPQ  VT+Y
Sbjct: 119 GSVDVKYTTKGAKAIAINCGLVGGGTDGSLDLCARVCLVDEDENIIFHTYVQPQSAVTDY 178

Query: 173 RYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSL 232
           RYE+TGLTEE ++N+   KEV+D+ILEIL NGES  RLM D GKARLLVGH L+  LD L
Sbjct: 179 RYEITGLTEEHLRNSKSHKEVQDRILEILYNGESARRLMSDSGKARLLVGHDLKRGLDCL 238

Query: 233 RMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKR 292
           R+NYP H+LRDTAKYRPL+KTNLVSHSLK        YDIQ+G HDPY DCVSVMRLYKR
Sbjct: 239 RINYPGHLLRDTAKYRPLLKTNLVSHSLK--------YDIQTGEHDPYVDCVSVMRLYKR 290

Query: 293 FRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 342
            R QDHQ + IG  ++   F+S K +ELE M+P+ELYQISKSDY+CWCLD
Sbjct: 291 MRAQDHQGKGIGTPDSDSGFESQKAEELENMTPDELYQISKSDYKCWCLD 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388501576|gb|AFK38854.1| unknown [Medicago truncatula]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 230/360 (63%), Positives = 281/360 (78%), Gaps = 20/360 (5%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD E + P+  T RHKC ACYKQ+K+K++L+EHMK +YHS+HQPKC VC+K  KSFESLR
Sbjct: 1   MDNEEDPPEPPTKRHKCSACYKQYKKKEYLVEHMKTAYHSIHQPKCVVCEKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS-------- 112
           EHLTGPL+K  CS +FS  GC LC+  FDS +SL  H+E C L+APVP   +        
Sbjct: 61  EHLTGPLAKGLCSAVFSQYGCQLCLTRFDSHASLSDHRETCRLAAPVPLGTNEFPCTNIH 120

Query: 113 ----GAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 168
                + DE      P+A+AMDCEMVGGGS+G+L+LCARVCLVDEDEN+IFHTYV+PQ+P
Sbjct: 121 NNFLDSSDENDADCLPRAIAMDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQIP 180

Query: 169 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 228
           VTNYRY++TGLTEE +++ MPLKEV++KIL+IL NGES G++ LD GKARLLVGH L HD
Sbjct: 181 VTNYRYDITGLTEEHLQDGMPLKEVREKILQILYNGESIGKVRLDGGKARLLVGHDLAHD 240

Query: 229 LDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMR 288
           LD L M+YPDH++RDTAKYRPLMKTNLV +SLKYLTRTYLGYDIQ+G H+PYEDC+ VMR
Sbjct: 241 LDCLGMSYPDHLMRDTAKYRPLMKTNLVCYSLKYLTRTYLGYDIQTGTHNPYEDCIPVMR 300

Query: 289 LYKRFRRQDHQVEEIGNQNTTGS------FDSYKYKELEKMSPNELYQISKSDYRCWCLD 342
           LYKR R Q H+  E G +  T S      FDS++ KEL+ ++P+ELY ISKSDYRCWCLD
Sbjct: 301 LYKRIRGQSHK--EKGYRTLTPSDNILDMFDSWRSKELDNLTPDELYAISKSDYRCWCLD 358

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086710|emb|CBI32345.3| unnamed protein product [Vitis vinifera]

 Score =  433 bits (1114), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 205/317 (64%), Positives = 250/317 (78%), Gaps = 12/317 (3%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           M +EA   +  T R+KC+AC++Q+K+K+HL+EHM++SYHSVHQPKC VCQK  KSF+SLR
Sbjct: 1   MGSEAVPSESRTTRYKCLACFRQYKKKEHLVEHMRVSYHSVHQPKCGVCQKQFKSFQSLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFK---------- 110
           EHLTG L K +C  IFS++GCN C+ IF +  SL +HKE C L  PV  +          
Sbjct: 61  EHLTGNLPKKNCLKIFSEQGCNYCLKIFKNADSLSEHKEMCQLPVPVTIEKIRMPSTESQ 120

Query: 111 --ISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLP 168
              S +I+   T RG +A+A+DCE VGGGS+G+LDLCARVCL+DEDEN+IFHTYVQPQ+P
Sbjct: 121 IDFSDSINRDHTSRGLEAIAIDCEKVGGGSDGSLDLCARVCLIDEDENIIFHTYVQPQIP 180

Query: 169 VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHD 228
           VTNYRYE+TG+TE  +++AMPLKEV++K++E+L NGES GRL LD GK RLLVGH L HD
Sbjct: 181 VTNYRYELTGITEAHLRDAMPLKEVREKVMEVLRNGESIGRLRLDGGKGRLLVGHDLRHD 240

Query: 229 LDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMR 288
           LD LRM+YPDH+LRDTAKY PLMKTNLVS SLK LT+ YLGYDIQSG+HDPYEDCVSVMR
Sbjct: 241 LDCLRMHYPDHLLRDTAKYLPLMKTNLVSFSLKSLTQKYLGYDIQSGMHDPYEDCVSVMR 300

Query: 289 LYKRFRRQDHQVEEIGN 305
           LYKR + QDH  E IG 
Sbjct: 301 LYKRMQSQDHSDEGIGT 317

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449811|ref|XP_004142658.1| PREDICTED: RNA exonuclease 4-like [Cucumis sativus] gi|449507969|ref|XP_004163181.1| PREDICTED: RNA exonuclease 4-like [Cucumis sativus]

 Score =  420 bits (1080), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 206/356 (57%), Positives = 263/356 (73%), Gaps = 27/356 (7%)

Query: 1   MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
           MD++ +  K  + RHKC ACYKQ+K+K+HLIEHM++SYHSVHQP+C VC K  KSFESLR
Sbjct: 1   MDSDHDPLKTPSLRHKCSACYKQYKKKEHLIEHMRVSYHSVHQPRCGVCLKHCKSFESLR 60

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV-------PFKISG 113
           EHL              ++GC LC+ + D P SL  H++ C ++APV       P  +S 
Sbjct: 61  EHLM-------------EQGCGLCLRVLDGPESLSDHQDICCITAPVHQGTSLPPTDLSD 107

Query: 114 AIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYR 173
             +E R+ RG  A+A+DC M GGGS+G LD+C  +CLVDEDE +IF+T+VQPQ+P+TNYR
Sbjct: 108 CYEEDRSDRGLGAIAIDCVMAGGGSDGALDICVWICLVDEDEKLIFNTFVQPQIPITNYR 167

Query: 174 YEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR 233
           +EVTGL EE ++ AMPLK V++K+L++L NGES GRL L+ GKA+LLVGH LEHDLD LR
Sbjct: 168 HEVTGLKEEHMRYAMPLKNVQEKVLKLLLNGESIGRLRLNGGKAKLLVGHDLEHDLDCLR 227

Query: 234 MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRF 293
           +NYPDHMLRDTA+Y PLMKTNLVSHSLKYLTR YLGYDI+   HDPYE+CVSVMRLYKR 
Sbjct: 228 LNYPDHMLRDTARYHPLMKTNLVSHSLKYLTRAYLGYDIRQDGHDPYENCVSVMRLYKRM 287

Query: 294 RRQDH--QVEEIG-----NQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 342
           R  DH  QV  +       Q    + DS+  K+LEKM+P+ELY++S+S+++CWC D
Sbjct: 288 RSLDHHRQVMTLSITPSCIQYVAPNLDSHSAKDLEKMTPDELYEMSRSNFKCWCHD 343

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452464|ref|XP_002274475.1| PREDICTED: apoptosis-enhancing nuclease-like [Vitis vinifera]

 Score =  404 bits (1039), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/345 (55%), Positives = 251/345 (72%), Gaps = 18/345 (5%)

Query: 12  TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAH 71
           + R+KC ACY+QF R +HL++HM+ SYHSVH+P C +C+K  +SFESLREHL GPL K  
Sbjct: 50  SQRNKCAACYRQFNRLEHLVDHMRTSYHSVHEPTCGICKKHCRSFESLREHLIGPLPKVE 109

Query: 72  CSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAI-----------DEKRT 120
           C+ IFS RGCNLC++I  SP++L  H+  C LS       +GA+           D    
Sbjct: 110 CARIFSVRGCNLCLDILGSPNALRAHRGTCQLSR----GNTGALLSRMANLGIQDDLNSR 165

Query: 121 CRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLT 180
            RG K VA+ C+MVGGG++G+LDLCARVCL+DE EN+IFHTYV+PQ+PVTNYRYE TG  
Sbjct: 166 TRGSKVVALGCKMVGGGTDGSLDLCARVCLIDEYENIIFHTYVKPQIPVTNYRYETTGTR 225

Query: 181 EEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHM 240
            E +++AMP+K+V+ KI + L NGE   ++    GKAR+LVGHGL+HDLD L+M YP  M
Sbjct: 226 PEFLRDAMPVKQVQRKIQDFLCNGEPIWKIRSRGGKARILVGHGLDHDLDCLQMEYPTLM 285

Query: 241 LRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQV 300
           +RDTAKY PLMKT+ +S+SLKYLT+ YLGYDIQ+G+ DPYEDCV+ MRLY R R Q H++
Sbjct: 286 IRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYEDCVATMRLYMRMRSQSHKI 345

Query: 301 EE---IGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 342
           E+     +     +F S +  ELE+M+P+E+ +IS+SDY CWCLD
Sbjct: 346 EDYPLASDPQNRNNFASGRQSELERMTPDEMLEISRSDYYCWCLD 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147810158|emb|CAN71456.1| hypothetical protein VITISV_036419 [Vitis vinifera]

 Score =  403 bits (1036), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 191/345 (55%), Positives = 251/345 (72%), Gaps = 18/345 (5%)

Query: 12  TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAH 71
           + R+KC ACY+QF R +HL++HM+ SYHSVH+P C +C+K  +SFESLREHL GPL K  
Sbjct: 6   SQRNKCAACYRQFNRLEHLVDHMRTSYHSVHEPTCGICKKHCRSFESLREHLIGPLPKVE 65

Query: 72  CSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAI-----------DEKRT 120
           C+ IFS RGCNLC++I  SP++L  H+  C LS       +GA+           D    
Sbjct: 66  CARIFSVRGCNLCLDILGSPNALRAHRGTCQLSR----GNTGALLSRMANLGIQDDLNSR 121

Query: 121 CRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLT 180
            RG K VA+ C+MVGGG++G+LDLCARVCL+DE EN+IFHTYV+PQ+PVTNYRYE TG  
Sbjct: 122 TRGSKVVALGCKMVGGGTDGSLDLCARVCLIDEYENIIFHTYVKPQIPVTNYRYETTGTR 181

Query: 181 EEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHM 240
            E +++AMP+K+V+ KI + L NGE   ++    GKAR+LVGHGL+HDLD L+M YP  M
Sbjct: 182 PEFLRDAMPVKQVQRKIQDFLCNGEPIWKIRSRGGKARILVGHGLDHDLDCLQMEYPTLM 241

Query: 241 LRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQV 300
           +RDTAKY PLMKT+ +S+SLKYLT+ YLGYDIQ+G+ DPYEDCV+ MRLY R R Q H++
Sbjct: 242 IRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYEDCVATMRLYMRMRSQSHKI 301

Query: 301 EE---IGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 342
           E+     +     +F S +  ELE+M+P+E+ +IS+SDY CWCLD
Sbjct: 302 EDYPLASDPQNRNNFASGRQSELERMTPDEMLEISRSDYYCWCLD 346

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
TAIR|locus:2066406	344	AT2G48100 [Arabidopsis thalian	0.970	0.965	0.564	7.7e-103
TAIR|locus:2086839	357	AT3G27970 [Arabidopsis thalian	0.997	0.955	0.529	5.4e-102
TAIR|locus:2170533	348	AT5G40310 [Arabidopsis thalian	0.964	0.948	0.529	1.9e-99
FB|FBgn0036405	290	CG6833 [Drosophila melanogaste	0.5	0.589	0.363	5.2e-26
ZFIN|ZDB-GENE-120215-216	418	si:ch73-209e20.4 "si:ch73-209e	0.540	0.442	0.348	2.9e-25
TAIR|locus:2086320	275	AT3G15080 [Arabidopsis thalian	0.558	0.694	0.334	5.3e-24
SGD|S000005440	289	REX4 "Putative RNA exonuclease	0.558	0.660	0.330	4.8e-23
UNIPROTKB|Q9GZR2	422	REXO4 "RNA exonuclease 4" [Hom	0.459	0.372	0.350	3.3e-22
UNIPROTKB|F1PBR5	411	REXO4 "Uncharacterized protein	0.441	0.367	0.363	3.6e-22
MGI|MGI:2684957	432	Rexo4 "REX4, RNA exonuclease 4	0.461	0.365	0.352	4.9e-22

TAIR|locus:2066406 AT2G48100 [Arabidopsis thaliana (taxid:3702)]

 Score = 1019 (363.8 bits), Expect = 7.7e-103, P = 7.7e-103
 Identities = 197/349 (56%), Positives = 247/349 (70%)

Query:     1 MDTEAELPKRS--TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFES 58
             MD++    KR   + RH+CVACYK F R++HL+EHMKISYHS+HQP+C VC K  KSFES
Sbjct:     1 MDSQLNPSKRRKISVRHRCVACYKMFNRREHLVEHMKISYHSLHQPRCGVCLKHCKSFES 60

Query:    59 LREHLTGP--LSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAID 116
             +REHL  P  LSK +C  IF+ RGC LC+ IF+   +L +HK  C LS P P   S   +
Sbjct:    61 VREHLNVPDHLSKGNCKAIFTKRGCTLCLQIFEEAFALAEHKNKCHLSPPRPLGTSTQRN 120

Query:   117 EKRTCRGP--KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRY 174
                +  G   KA+A+DCEMVGGG++GT+D CA VCLVD+DENVIF T+VQP LPVT+YR+
Sbjct:   121 PSSSLAGSRLKAMALDCEMVGGGADGTIDQCASVCLVDDDENVIFSTHVQPLLPVTDYRH 180

Query:   175 EVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLL-VGHGLEHDLDSLR 233
             E+TGLT+ED+K+ MPL+ V++++   L  G++       DG  RLL VGH L HD+  L+
Sbjct:   181 EITGLTKEDLKDGMPLEHVRERVFSFLCGGQN-------DGAGRLLLVGHDLRHDMSCLK 233

Query:   234 MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRF 293
             + YP H+LRDTAKY PLMKTNLVS SLKYLT++YLGY IQ G H+ YEDCVS MRLYKR 
Sbjct:   234 LEYPSHLLRDTAKYVPLMKTNLVSQSLKYLTKSYLGYKIQCGKHEVYEDCVSAMRLYKRM 293

Query:   294 RRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 342
             R Q+H     G     G  +S K  +LEKM+  ELYQ S S+YRCWCLD
Sbjct:   294 RDQEHVCS--GKAEGNG-LNSRKQSDLEKMNAEELYQKSTSEYRCWCLD 339

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=RCA

TAIR|locus:2086839 AT3G27970 [Arabidopsis thaliana (taxid:3702)]

 Score = 1011 (360.9 bits), Expect = 5.4e-102, P = 5.4e-102
 Identities = 188/355 (52%), Positives = 252/355 (70%)

Query:     1 MDTEAELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR 60
             MD  + +    T R+KC ACY+QF + +HL+EHMKISYHS H+P C VC+K  +SFESLR
Sbjct:     1 MDYRSSMESSETLRNKCAACYRQFNKLEHLVEHMKISYHSGHEPTCGVCKKHCRSFESLR 60

Query:    61 EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEAC---SLSAPVPFKISG---- 113
             EHL GPL K  C  IFS RGC  CM I +SP+S   H+E C   S+++ +  +++     
Sbjct:    61 EHLIGPLPKQECKNIFSLRGCRFCMTILESPNSRRIHQERCQFSSVNSGLTTRMAALGLR 120

Query:   114 --AIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTN 171
               A+ +  + R P+ VA+ C+MVGGGS+G+LDLCARVC+ DE +NVIFHTYV+P + VT+
Sbjct:   121 DKAMIDYTSSRSPRVVALSCKMVGGGSDGSLDLCARVCITDESDNVIFHTYVKPSMAVTS 180

Query:   172 YRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDS 231
             YRYE TG+  E++++AMPLK+V+ KI E L NGE   ++    GKAR+LVGHGL+HDLD 
Sbjct:   181 YRYETTGIRPENLRDAMPLKQVQRKIQEFLCNGEPMWKIRPRGGKARILVGHGLDHDLDR 240

Query:   232 LRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 291
             L++ YP  M+RDTAKY PLMKT+ +S+SLKYLT+ YLGYD+  G+ DPYEDCV+ MRLY 
Sbjct:   241 LQLEYPSSMIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDVHFGIQDPYEDCVATMRLYT 300

Query:   292 RFRRQDHQVEEI----GNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 342
             R R Q H++E        QN +    +++  E E+MSP+E+  IS+SDY CWCLD
Sbjct:   301 RMRYQKHKIEAYPLAADAQNRSNQV-AWRQSEAERMSPDEMLSISRSDYYCWCLD 354

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2170533 AT5G40310 [Arabidopsis thaliana (taxid:3702)]

 Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
 Identities = 182/344 (52%), Positives = 244/344 (70%)

Query:    12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAH 71
             T R+KC  CY+QF +K+HL+EHM+ISYHSVH+P C +C K  +SF+SLREHL GPL K  
Sbjct:     3 TCRNKCGGCYRQFNKKEHLVEHMRISYHSVHEPTCGICNKHCRSFDSLREHLIGPLPKQE 62

Query:    72 CSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLS----------APVPFKISGAIDEKRTC 121
             C  IFS RGC  C+ I +SP++   H+E C LS          A +  + +  ID   + 
Sbjct:    63 CKNIFSIRGCRFCLTILESPNARRIHQERCQLSNVTSGLMIRMAALGLRNNSTIDYTSS- 121

Query:   122 RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTE 181
             R P+ VA+ C+MVGGGS+G+LDLCARVC+ DE ENV+FHTYV+P +PVTNYRYE+TG+  
Sbjct:   122 RSPRVVALSCKMVGGGSDGSLDLCARVCITDESENVVFHTYVKPTIPVTNYRYEMTGIRP 181

Query:   182 EDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHML 241
             E++++AM LK  + K+ E L NGE   ++   +GKAR+LVGHGL++ LDSL++ Y   M+
Sbjct:   182 ENLRDAMRLKHAQRKVQEFLCNGEPMWKIRPRNGKARILVGHGLDNHLDSLQLEYSSSMI 241

Query:   242 RDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVE 301
             RDTA+Y PLMK++ +S+SLKYLT+ YLGYDI  G+ DPYEDCV+ MRLY R R Q H+ E
Sbjct:   242 RDTAEYPPLMKSSKLSNSLKYLTQAYLGYDIHVGIQDPYEDCVATMRLYTRMRYQKHRAE 301

Query:   302 EIGNQNTT---GSFDSYKYKELEKMSPNELYQISKSDYRCWCLD 342
                  + T    +F +++  ELE+MSP EL  +S+SDY CWCLD
Sbjct:   302 AYPLASDTQNHNNFAAWRQNELERMSPEELLDLSRSDYYCWCLD 345

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

FB|FBgn0036405 CG6833 [Drosophila melanogaster (taxid:7227)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 68/187 (36%), Positives = 107/187 (57%)

Query:   108 PFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQL 167
             P   S  +  K+     + +AMDCEMVG G N   D+ ARV +V+   +V+   YV+P+ 
Sbjct:    99 PLSKSARMRMKKKAHRNRILAMDCEMVGVGHNTRDDMLARVSIVNRMGHVLLDKYVKPRK 158

Query:   168 PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH 227
              VT+YR  V+G+  +DI N      V+++++++++               R+LVGHGL +
Sbjct:   159 EVTDYRTSVSGIRPQDIANGEDFAAVQNEVMKLIHG--------------RILVGHGLRN 204

Query:   228 DLDSLRMNYPDHMLRDTAKYRPLMK--TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVS 285
             DL  L + +P H +RDT+ Y+PL K  +N  + SLK LT+  LG +IQ+G H+  ED  +
Sbjct:   205 DLAVLGIRHPFHDIRDTSHYKPLCKLISNTHTPSLKRLTKAVLGQEIQTGEHNSVEDARA 264

Query:   286 VMRLYKR 292
              M +Y R
Sbjct:   265 AMGIYNR 271

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

ZFIN|ZDB-GENE-120215-216 si:ch73-209e20.4 "si:ch73-209e20.4" [Danio rerio (taxid:7955)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 70/201 (34%), Positives = 105/201 (52%)

Query:    98 KEACSLSAPVPFKISGAIDEKRTCRG-PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDEN 156
             ++ C L+   P      + ++    G  +AVAMDCEMVG G  G   + ARV LV+    
Sbjct:   204 RKRCGLAKCDPKNTEKMLVKEHAFEGVTRAVAMDCEMVGVGYKGEDSILARVSLVNHFGK 263

Query:   157 VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGK 216
              I+  YV+P   VT+YR  V+G+  +DIKN   +K V+ ++ +IL              K
Sbjct:   264 CIYDKYVKPTEKVTDYRTAVSGIRPDDIKNGEDIKTVQKEVAQIL--------------K 309

Query:   217 ARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPL-MKTNLVSHSLKYLTRTYLGYDIQSG 275
              R+LVGH + +DL  L +++P  M+RDT +Y+P   K      +L+ L R  L   +Q G
Sbjct:   310 GRILVGHAIHNDLKILLLDHPKKMIRDTQRYKPFRQKVKSSRPALRNLCRQILNVQVQQG 369

Query:   276 VHDPYEDCVSVMRLYKRFRRQ 296
              H   +D  + MRLY   R+Q
Sbjct:   370 EHSSVQDAQATMRLYTMVRKQ 390

GO:0005622 "intracellular" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

TAIR|locus:2086320 AT3G15080 [Arabidopsis thaliana (taxid:3702)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 70/209 (33%), Positives = 111/209 (53%)

Query:    89 DSPSSLI-KHKEACSLSAPVPFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCAR 147
             ++PSS++ K KE       VP KI+              VAMDCEMVG  S GT     R
Sbjct:    46 ENPSSILGKRKERPDSEVDVP-KINPLAPVNDDSSLTDEVAMDCEMVGV-SQGTKSALGR 103

Query:   148 VCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGEST 207
             V LV++  NV++  +V+P   V ++R  ++G+   D++ A   +  + K+ E++      
Sbjct:   104 VTLVNKWGNVLYDEFVRPVEHVVDFRTSISGIRPRDLRKAKDFRVAQTKVAELI------ 157

Query:   208 GRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTY 267
                     K ++LVGH L +DL +L + +P   +RDT +Y+P +K      SLK+L    
Sbjct:   158 --------KGKILVGHALHNDLKALLLTHPKKDIRDTGEYQPFLKGK-TRKSLKHLASEI 208

Query:   268 LGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 296
             LG DIQ+G H P +D  + M LY++ R++
Sbjct:   209 LGADIQNGEHCPIDDARAAMMLYQKNRKE 237

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

SGD|S000005440 REX4 "Putative RNA exonuclease possibly involved in ribosome biogenesis" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 69/209 (33%), Positives = 109/209 (52%)

Query:    96 KHKEACSLSAPVPFKISG--AIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDE 153
             K   + ++  PV   IS    I+  ++    K +AMDCE VG G  G     AR+ +V+ 
Sbjct:    89 KANTSTTIKEPVKVGISEDTRINSNKSKEIGKYIAMDCEFVGVGPEGKESALARISIVNY 148

Query:   154 DENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLD 213
               +V+   +V+P+  V  +R  V+G+  E +KNA+  KE + K  +IL            
Sbjct:   149 FGHVVLDEFVKPREKVVEWRTWVSGIKPEHMKNAITFKEAQKKTADIL------------ 196

Query:   214 DGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSH--SLKYLTRTYLGYD 271
               + R+LVGH L+HDL++L +++P  +LRDT+++ P  K        SLK LTR  L   
Sbjct:   197 --EGRILVGHALKHDLEALMLSHPKSLLRDTSRHLPFRKLYAKGKTPSLKKLTREVLKIS 254

Query:   272 IQSGVHDPYEDCVSVMRLYKRFRRQDHQV 300
             IQ G H   ED  + M LYK+ + +  ++
Sbjct:   255 IQEGEHSSVEDARATMLLYKKEKTEFEKI 283

GO:0005622 "intracellular" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA;IGI

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0008408 "3'-5' exonuclease activity" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0090305 "nucleic acid phosphodiester bond hydrolysis" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0000027 "ribosomal large subunit assembly" evidence=IGI

UNIPROTKB|Q9GZR2 REXO4 "RNA exonuclease 4" [Homo sapiens (taxid:9606)]

 Score = 261 (96.9 bits), Expect = 3.3e-22, P = 3.3e-22
 Identities = 61/174 (35%), Positives = 98/174 (56%)

Query:   125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
             +A+A+DCEMVG G  G   + ARV +V++    ++  YV+P  PVT+YR  V+G+  E++
Sbjct:   242 RALALDCEMVGVGPKGEESMAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL 301

Query:   185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
             K    L+ V+ ++ E+L              K R+LVGH L +DL  L +++P   +RDT
Sbjct:   302 KQGEELEVVQKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDT 347

Query:   245 AKYRPLMKTNLVSH--SLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 296
              KY+P  K+ + S   SL+ L+   LG  +Q   H   +D  + MRLY   +++
Sbjct:   348 QKYKPF-KSQVKSGRPSLRLLSEKILGLQVQQAEHCSIQDAQAAMRLYVMVKKE 400

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=NAS

GO:0005634 "nucleus" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1PBR5 REXO4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 260 (96.6 bits), Expect = 3.6e-22, P = 3.6e-22
 Identities = 61/168 (36%), Positives = 93/168 (55%)

Query:   125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
             +A+AMDCEMVG G  G   + ARV +V++    ++  YV+P  PVT+YR  V+G+  E++
Sbjct:   231 RALAMDCEMVGAGPKGEESVAARVSIVNQYGKCVYDKYVKPTQPVTDYRTAVSGIRPENL 290

Query:   185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
             K     + V+ ++ ++L              K R+LVGH L +DL  L +++P   +RDT
Sbjct:   291 KQGEKFEVVQKEVADML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDT 336

Query:   245 AKYRPLMKTNLVSH--SLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLY 290
              KY+P  K+ + S   SLK L    LG  +Q   H   +D  + MRLY
Sbjct:   337 QKYKPF-KSQVKSGRPSLKLLAERILGIQVQQAEHCSIQDAQAAMRLY 383

GO:0005622 "intracellular" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:2684957 Rexo4 "REX4, RNA exonuclease 4 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 260 (96.6 bits), Expect = 4.9e-22, P = 4.9e-22
 Identities = 61/173 (35%), Positives = 94/173 (54%)

Query:   125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
             KA+A+DCEMVG G  G   + ARV +V++    ++  YV+P  PVT+YR  V+G+  E++
Sbjct:   252 KALALDCEMVGVGPKGEESIAARVSIVNQYGKCVYDKYVKPTEPVTDYRTAVSGIRPENL 311

Query:   185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
             K     + VK ++ E+L              K R+LVGH L +DL  L +++P   +RDT
Sbjct:   312 KQGEEFEVVKKEVAEML--------------KGRILVGHALHNDLKVLFLDHPKKKIRDT 357

Query:   245 AKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 296
              K++P   +      SLK L+   LG  +Q   H   +D  + MRLY   +R+
Sbjct:   358 QKFKPFRSRVKSGRPSLKRLSEKILGIRVQQAEHCSIQDAQAAMRLYVMVKRE 410

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00001978 hypothetical protein (349 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
cd06144	152	cd06144, REX4_like, DEDDh 3'-5' exonuclease domain	4e-78
smart00479	169	smart00479, EXOIII, exonuclease domain in DNA-poly	1e-34
cd06145	150	cd06145, REX1_like, DEDDh 3'-5' exonuclease domain	8e-33
cd06149	157	cd06149, ISG20, DEDDh 3'-5' exonuclease domain of	3e-32
cd06137	161	cd06137, DEDDh_RNase, DEDDh 3'-5' exonuclease doma	4e-22
pfam00929	161	pfam00929, RNase_T, Exonuclease	9e-21
cd06127	159	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain fam	1e-12
cd06143	174	cd06143, PAN2_exo, DEDDh 3'-5' exonuclease domain	1e-09
TIGR01405	1213	TIGR01405, polC_Gram_pos, DNA polymerase III, alph	2e-07
COG0847	243	COG0847, DnaQ, DNA polymerase III, epsilon subunit	1e-06
COG2176	1444	COG2176, PolC, DNA polymerase III, alpha subunit (	3e-06
cd06133	176	cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonucleas	4e-06
PRK00448	1437	PRK00448, polC, DNA polymerase III PolC; Validated	7e-05
PRK07740	244	PRK07740, PRK07740, hypothetical protein; Provisio	1e-04
cd06131	167	cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-	0.001
TIGR01406	225	TIGR01406, dnaQ_proteo, DNA polymerase III, epsilo	0.002
PRK08074	928	PRK08074, PRK08074, bifunctional ATP-dependent DNA	0.004

>gnl|CDD|99847 cd06144, REX4_like, DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins

 Score =  235 bits (603), Expect = 4e-78
 Identities = 75/166 (45%), Positives = 106/166 (63%), Gaps = 15/166 (9%)

Query: 127 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 186
           VA+DCEMVG G +G+    ARV +V+ED NV++ TYV+PQ PVT+YR  V+G+  E +K+
Sbjct: 1   VALDCEMVGVGPDGSESALARVSIVNEDGNVVYDTYVKPQEPVTDYRTAVSGIRPEHLKD 60

Query: 187 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 246
           A   +EV+ K+ E+L                R+LVGH L++DL  L++++P  ++RDT+K
Sbjct: 61  APDFEEVQKKVAELLKG--------------RILVGHALKNDLKVLKLDHPKKLIRDTSK 106

Query: 247 YRPLMKTNL-VSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 291
           Y+PL KT    S SLK L +  LG DIQ G H   ED  + MRLY+
Sbjct: 107 YKPLRKTAKGKSPSLKKLAKQLLGLDIQEGEHSSVEDARAAMRLYR 152

This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherchia coli RNase T. Length = 152

>gnl|CDD|214685 smart00479, EXOIII, exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases

 Score =  124 bits (314), Expect = 1e-34
 Identities = 48/181 (26%), Positives = 76/181 (41%), Gaps = 27/181 (14%)

Query: 127 VAMDCEMVGGGSNGTLDLCARVCLVDED---ENVIFHTYVQPQLPVTNYRYEVTGLTEED 183
           V +DCE  G       D    +  VD D      +F TYV+P  P+T+Y  E+ G+T E 
Sbjct: 3   VVIDCETTGLDPGK--DEIIEIAAVDVDGGEIIEVFDTYVKPDRPITDYATEIHGITPEM 60

Query: 184 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------ 237
           + +A   +EV +++LE L                 L+ G+    DL  L++ +P      
Sbjct: 61  LDDAPTFEEVLEELLEFLRGRI-------------LVAGNSAHFDLRFLKLEHPRLGIKQ 107

Query: 238 --DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRR 295
                + DT K        L  +SLK L +  L   IQ   H   +D  +  +L+K+   
Sbjct: 108 PPKLPVIDTLKLARATNPGLPKYSLKKLAKRLLLEVIQRA-HRALDDARATAKLFKKLLE 166

Query: 296 Q 296
           +
Sbjct: 167 R 167

Length = 169

>gnl|CDD|99848 cd06145, REX1_like, DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins

 Score =  118 bits (299), Expect = 8e-33
 Identities = 57/179 (31%), Positives = 87/179 (48%), Gaps = 43/179 (24%)

Query: 127 VAMDCEMV--GGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
            A+DCEM     G    L+L  RV +VDE+  V+    V+P   + +Y    +G+TEE +
Sbjct: 1   FALDCEMCYTTDG----LEL-TRVTVVDENGKVVLDELVKPDGEIVDYNTRFSGITEEML 55

Query: 185 KNA-MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRD 243
           +N    L++V+ K+L +++                +LVGH LE+DL +L++     ++ D
Sbjct: 56  ENVTTTLEDVQKKLLSLISPDT-------------ILVGHSLENDLKALKL-IHPRVI-D 100

Query: 244 TA---------KYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYK 291
           TA          Y+P         SLK L + YLG DIQ G   HD  ED  + + L K
Sbjct: 101 TAILFPHPRGPPYKP---------SLKNLAKKYLGRDIQQGEGGHDSVEDARAALELVK 150

This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T. Length = 150

>gnl|CDD|99852 cd06149, ISG20, DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins

 Score =  117 bits (295), Expect = 3e-32
 Identities = 58/171 (33%), Positives = 87/171 (50%), Gaps = 20/171 (11%)

Query: 127 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 186
           VA+DCEMVG G  G     AR  +V+   +V++  Y++P+ PVT+YR   +G+  + + N
Sbjct: 1   VAIDCEMVGTGPGGRESELARCSIVNYHGDVLYDKYIRPEGPVTDYRTRWSGIRRQHLVN 60

Query: 187 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 246
           A P    + +IL+IL              K +++VGH + +D  +L+  +P HM RDT+ 
Sbjct: 61  ATPFAVAQKEILKIL--------------KGKVVVGHAIHNDFKALKYFHPKHMTRDTST 106

Query: 247 YRPLMKTNLVSH----SLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYK 291
              L +          SLK L +  L  DIQ G   H   ED  + M LYK
Sbjct: 107 IPLLNRKAGFPENCRVSLKVLAKRLLHRDIQVGRQGHSSVEDARATMELYK 157

Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20) is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. It was also independently identified by its response to estrogen and was called HEM45 (human estrogen regulated transcript). ISG20 is a DEDDh-type DnaQ-like 3'-5' exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ISG20 may be a major effector of innate immunity against pathogens including viruses, bacteria, and parasites. It is located in promyelocytic leukemia (PML) nuclear bodies, sites for oncogenic DNA viral transcription and replication. It may carry out its function by degrading viral RNAs as part of the IFN-regulated antiviral response. Length = 157

>gnl|CDD|99840 cd06137, DEDDh_RNase, DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins

 Score = 90.8 bits (226), Expect = 4e-22
 Identities = 55/176 (31%), Positives = 78/176 (44%), Gaps = 28/176 (15%)

Query: 127 VAMDCEMVGGGSNGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIK 185
           VA+DCEMVG           R+  VD     V+  + V+P + VT++R   +G+T  D++
Sbjct: 1   VALDCEMVG--LADGDSEVVRISAVDVLTGEVLIDSLVRPSVRVTDWRTRFSGVTPADLE 58

Query: 186 NAMPLKEVKDKILEILNNGESTGRLMLDD--GKARLLVGHGLEHDLDSLRMNYPDH---- 239
            A    +    I      G    R  L        +LVGH L++DLD+LRM    H    
Sbjct: 59  EA---AKAGKTI-----FGWEAARAALWKFIDPDTILVGHSLQNDLDALRM---IHTRVV 107

Query: 240 ---MLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG--VHDPYEDCVSVMRLY 290
              +L   A   PL K      SL+ L R +LG  IQ G   HD  ED ++   + 
Sbjct: 108 DTAILTREAVKGPLAKRQW---SLRTLCRDFLGLKIQGGGEGHDSLEDALAAREVV 160

This group is composed of eukaryotic exoribonucleases that include PAN2, RNA exonuclease 1 (REX1 or Rex1p), REX3 (Rex3p), REX4 (or Rex4p), ISG20, and similar proteins. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. REX proteins are required for the processing and maturation of many RNA species, and ISG20 is an interferon-induced antiviral exonuclease with a strong preference for single-stranded RNA. Length = 161

>gnl|CDD|216200 pfam00929, RNase_T, Exonuclease

 Score = 87.0 bits (216), Expect = 9e-21
 Identities = 45/169 (26%), Positives = 67/169 (39%), Gaps = 13/169 (7%)

Query: 127 VAMDCEMVGGGSNGT--LDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
           V +DCE  G        +++ A   +  E+   +F TYV+P+  +T+   E  G+T E +
Sbjct: 1   VVIDCETTGLDPEKDEIIEIAAVSIVGGENIGPVFDTYVKPERLITDEATEFHGITPEML 60

Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
           +NA   +EV +  LE L         +L    A   VG  L  DL  L++  P   L D 
Sbjct: 61  RNAPSFEEVLEAFLEFLK-----KLKILVGHNASFDVGFLLYDDLRFLKLPMP--KLNDV 113

Query: 245 AKYRPLMK---TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLY 290
                L K         SL  L        IQ   H   +D  +   L+
Sbjct: 114 IDTLILDKATYKGFKRRSLDALAEKLGLEKIQRA-HRALDDARATAELF 161

This family includes a variety of exonuclease proteins, such as ribonuclease T and the epsilon subunit of DNA polymerase III.;. Length = 161

>gnl|CDD|176648 cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family

 Score = 64.6 bits (158), Expect = 1e-12
 Identities = 41/179 (22%), Positives = 59/179 (32%), Gaps = 34/179 (18%)

Query: 127 VAMDCEMVGGGSNGTLDLCARVC-----LVDEDENVI--FHTYVQPQLPVTNYRYEVTGL 179
           V  D E  G           R+       VD    ++  F T V P  P+      + G+
Sbjct: 1   VVFDTETTGLDPKK-----DRIIEIGAVKVDGGIEIVERFETLVNPGRPIPPEATAIHGI 55

Query: 180 TEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDH 239
           T+E + +A P +EV  + LE L                R+LV H    DL  L       
Sbjct: 56  TDEMLADAPPFEEVLPEFLEFL--------------GGRVLVAHNASFDLRFLNRELRRL 101

Query: 240 MLR-------DTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 291
                     DT +    +   L SH L  L     G  ++ G H    D ++   L  
Sbjct: 102 GGPPLPNPWIDTLRLARRLLPGLRSHRLGLLLAERYGIPLE-GAHRALADALATAELLL 159

DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others. Length = 159

>gnl|CDD|99846 cd06143, PAN2_exo, DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2

 Score = 56.1 bits (136), Expect = 1e-09
 Identities = 47/156 (30%), Positives = 68/156 (43%), Gaps = 25/156 (16%)

Query: 146 ARVCLVD---EDENVIF-HTYVQPQLPVTNYRYEVTGLTEEDI------KNAMPLKEVKD 195
           ARV +V    E E V F   Y+    PV +Y    +G+   D+      KN   LK    
Sbjct: 34  ARVSVVRGEGELEGVPFIDDYISTTEPVVDYLTRFSGIKPGDLDPKTSSKNLTTLKSAYL 93

Query: 196 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNL 255
           K+           RL++D G   + VGHGL  D   + +  P   + DT +   L     
Sbjct: 94  KL-----------RLLVDLGC--IFVGHGLAKDFRVINIQVPKEQVIDTVELFHLPGQRK 140

Query: 256 VSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYK 291
           +S  L++L    LG  IQS  HD  ED  + ++LY+
Sbjct: 141 LS--LRFLAWYLLGEKIQSETHDSIEDARTALKLYR 174

PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Length = 174

>gnl|CDD|233397 TIGR01405, polC_Gram_pos, DNA polymerase III, alpha chain, Gram-positive type

 Score = 52.8 bits (127), Expect = 2e-07
 Identities = 37/172 (21%), Positives = 68/172 (39%), Gaps = 34/172 (19%)

Query: 159 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKAR 218
           F  +++P  P++ +  E+TG+T++ ++NA  ++EV +K  E                K  
Sbjct: 226 FQFFIKPHEPLSAFVTELTGITQDMLENAPEIEEVLEKFKEFF--------------KDS 271

Query: 219 LLVGHGLEHDLDSLRMNYPDHMLR-------DTAKYRPLMKTNLVSHSLKYLTRTY-LGY 270
           +LV H    D+  L  N+    L        DT +    +     SH L  + +   +  
Sbjct: 272 ILVAHNASFDIGFLNTNFEKVGLEPLENPVIDTLELARALNPEYKSHRLGNICKKLGVDL 331

Query: 271 DIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIG----NQ--NTTGSFDSYK 316
           D     H    D  +  +++K       Q++E G     +  N   S + YK
Sbjct: 332 DDH---HRADYDAEATAKVFKVMVE---QLKEKGITNLEELNNKLSSEELYK 377

This model describes a polypeptide chain of DNA polymerase III. Full-length homologs of this protein are restricted to the Gram-positive lineages, including the Mycoplasmas. This protein is designated alpha chain and given the gene symbol polC, but is not a full-length homolog of other polC genes. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model [DNA metabolism, DNA replication, recombination, and repair]. Length = 1213

>gnl|CDD|223916 COG0847, DnaQ, DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]

 Score = 48.3 bits (115), Expect = 1e-06
 Identities = 33/149 (22%), Positives = 52/149 (34%), Gaps = 22/149 (14%)

Query: 152 DEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLM 211
                  FHT V P+ P+    +++ G+T+E + +A    EV  + L+ +          
Sbjct: 43  GRIVERSFHTLVNPERPIPPEIFKIHGITDEMLADAPKFAEVLPEFLDFIGGL------- 95

Query: 212 LDDGKARLLVGHGLEHDLDSLRMN-------YPDHMLRDTAKYRPLMKTNLVSHSLKYLT 264
                 RLLV H    D+  LR+         P   + DT              SL  L 
Sbjct: 96  ------RLLVAHNAAFDVGFLRVESERLGIEIPGDPVLDTLALARRHFPGFDRSSLDALA 149

Query: 265 RTYLGYDIQSGV-HDPYEDCVSVMRLYKR 292
              LG D      H    D +++  L+  
Sbjct: 150 E-RLGIDRNPFHPHRALFDALALAELFLL 177

Length = 243

>gnl|CDD|225087 COG2176, PolC, DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 38/174 (21%), Positives = 68/174 (39%), Gaps = 38/174 (21%)

Query: 159 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKAR 218
           F  +++P  P++    E+TG+T+E ++NA  ++EV +K  E +                 
Sbjct: 457 FQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLEKFREFI--------------GDS 502

Query: 219 LLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKT---------NLVSHSLKYLTRTY-L 268
           +LV H    D+  L  NY  + L       P++ T            SH L  L +   +
Sbjct: 503 ILVAHNASFDMGFLNTNYEKYGLEPLT--NPVIDTLELARALNPEFKSHRLGTLCKKLGV 560

Query: 269 GYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTT------GSFDSYK 316
             +     H    D  +  +++  F +    ++E G  N +       S D YK
Sbjct: 561 ELERH---HRADYDAEATAKVFFVFLK---DLKEKGITNLSELNDKLSSEDLYK 608

Length = 1444

>gnl|CDD|99836 cd06133, ERI-1_3'hExo_like, DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 5/61 (8%)

Query: 148 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 202
             LVD     I   F +YV+P +   ++++  E+TG+T+ED+ NA    EV  + LE L 
Sbjct: 28  AVLVDVKTKEIIDTFSSYVKPVINPKLSDFCTELTGITQEDVDNAPSFPEVLKEFLEWLG 87

Query: 203 N 203
            
Sbjct: 88  K 88

This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional homolog of either ERI-1 or 3'hExo. Length = 176

>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated

 Score = 44.4 bits (106), Expect = 7e-05
 Identities = 28/131 (21%), Positives = 55/131 (41%), Gaps = 28/131 (21%)

Query: 153 EDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRL 210
           ++  +I  F  +++P  P++ +  E+TG+T++ +K+A  ++EV  K  E   +       
Sbjct: 447 KNGEIIDKFEFFIKPGHPLSAFTTELTGITDDMVKDAPSIEEVLPKFKEFCGD------- 499

Query: 211 MLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKT---------NLVSHSLK 261
                   +LV H    D+  +  NY    L       P++ T          L SH L 
Sbjct: 500 -------SILVAHNASFDVGFINTNYEKLGLEKIKN--PVIDTLELSRFLYPELKSHRLN 550

Query: 262 YLTRTY-LGYD 271
            L + + +  +
Sbjct: 551 TLAKKFGVELE 561

Length = 1437

>gnl|CDD|236085 PRK07740, PRK07740, hypothetical protein; Provisional

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 14/81 (17%)

Query: 153 EDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLML 212
           E E   F++ V+P+ P+  +  E+TG+T ED+  A PL EV  +    +           
Sbjct: 91  EVETDTFYSLVKPKRPIPEHILELTGITAEDVAFAPPLAEVLHRFYAFIG---------- 140

Query: 213 DDGKARLLVGHGLEHDLDSLR 233
               A +LV H   HD   LR
Sbjct: 141 ----AGVLVAHHAGHDKAFLR 157

Length = 244

>gnl|CDD|99835 cd06131, DNA_pol_III_epsilon_Ecoli_like, DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins

 Score = 38.7 bits (91), Expect = 0.001
 Identities = 12/47 (25%), Positives = 25/47 (53%)

Query: 159 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE 205
           FH Y+ P+  +    ++V G+T+E + +     E+ D+ L+ +   E
Sbjct: 37  FHVYINPERDIPEEAFKVHGITDEFLADKPKFAEIADEFLDFIRGAE 83

This subfamily is composed of the epsilon subunit of Escherichia coli DNA polymerase III (Pol III) and similar proteins. Pol III is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. It is a holoenzyme complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon subunit of Pol III also functions as a stabilizer of the holoenzyme complex. Length = 167

>gnl|CDD|130473 TIGR01406, dnaQ_proteo, DNA polymerase III, epsilon subunit, Proteobacterial

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 159 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE 205
           FH YV P+  +     +V G+T+E + +    KE+ D+ L+ +   E
Sbjct: 38  FHVYVNPERDMPAEAAKVHGITDEFLADKPKFKEIADEFLDFIGGSE 84

This model represents DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease domain as described in Pfam model pfam00929. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are excluded from this model, as are smaller proteins, also outside the Proteobacteria, that are similar in size to the epsilon subunit but as different in sequence as are the epsilon-like regions found in Gram-positive bacteria [DNA metabolism, DNA replication, recombination, and repair]. Length = 225

>gnl|CDD|236148 PRK08074, PRK08074, bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated

 Score = 38.8 bits (91), Expect = 0.004
 Identities = 17/58 (29%), Positives = 35/58 (60%), Gaps = 1/58 (1%)

Query: 148 VCLVDEDENV-IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG 204
             +V++ E +  F ++V P+ P+  +  E+TG++EE +K A   ++V  +I+E+L   
Sbjct: 28  AVVVEDGEILERFSSFVNPERPIPPFITELTGISEEMVKQAPLFEDVAPEIVELLEGA 85

Length = 928

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
KOG2249	280	consensus 3'-5' exonuclease [Replication, recombin	100.0
cd06149	157	ISG20 DEDDh 3'-5' exonuclease domain of Interferon	100.0
cd06145	150	REX1_like DEDDh 3'-5' exonuclease domain of RNA ex	100.0
cd06144	152	REX4_like DEDDh 3'-5' exonuclease domain of RNA ex	99.98
cd06143	174	PAN2_exo DEDDh 3'-5' exonuclease domain of the euk	99.97
cd06137	161	DEDDh_RNase DEDDh 3'-5' exonuclease domain of the	99.97
PRK07942	232	DNA polymerase III subunit epsilon; Provisional	99.95
PRK07740	244	hypothetical protein; Provisional	99.95
PRK05711	240	DNA polymerase III subunit epsilon; Provisional	99.94
TIGR01406	225	dnaQ_proteo DNA polymerase III, epsilon subunit, P	99.94
cd06130	156	DNA_pol_III_epsilon_like an uncharacterized bacter	99.94
PRK07247	195	DNA polymerase III subunit epsilon; Validated	99.94
PRK09146	239	DNA polymerase III subunit epsilon; Validated	99.94
PRK08517	257	DNA polymerase III subunit epsilon; Provisional	99.94
PRK06195	309	DNA polymerase III subunit epsilon; Validated	99.94
PRK07983	219	exodeoxyribonuclease X; Provisional	99.94
PRK06807	313	DNA polymerase III subunit epsilon; Validated	99.94
PRK07748	207	sporulation inhibitor KapD; Provisional	99.94
PRK06063	313	DNA polymerase III subunit epsilon; Provisional	99.93
PRK06310	250	DNA polymerase III subunit epsilon; Validated	99.93
PRK06309	232	DNA polymerase III subunit epsilon; Validated	99.93
TIGR00573	217	dnaq exonuclease, DNA polymerase III, epsilon subu	99.93
cd06131	167	DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl	99.93
PRK07246	820	bifunctional ATP-dependent DNA helicase/DNA polyme	99.92
PRK09145	202	DNA polymerase III subunit epsilon; Validated	99.92
COG2176	1444	PolC DNA polymerase III, alpha subunit (gram-posit	99.92
cd06134	189	RNaseT DEDDh 3'-5' exonuclease domain of RNase T.	99.92
PRK06722	281	exonuclease; Provisional	99.92
PRK07883	557	hypothetical protein; Validated	99.92
smart00479	169	EXOIII exonuclease domain in DNA-polymerase alpha	99.92
PRK08074	928	bifunctional ATP-dependent DNA helicase/DNA polyme	99.92
TIGR01407	850	dinG_rel DnaQ family exonuclease/DinG family helic	99.92
cd06136	177	TREX1_2 DEDDh 3'-5' exonuclease domain of three pr	99.91
TIGR01298	200	RNaseT ribonuclease T. in gamma-subdivision Proteo	99.91
KOG2248	380	consensus 3'-5' exonuclease [Replication, recombin	99.91
PRK05168	211	ribonuclease T; Provisional	99.91
PRK05601	377	DNA polymerase III subunit epsilon; Validated	99.91
cd06133	176	ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain o	99.89
TIGR01405	1213	polC_Gram_pos DNA polymerase III, alpha chain, Gra	99.89
PRK09182	294	DNA polymerase III subunit epsilon; Validated	99.87
COG0847	243	DnaQ DNA polymerase III, epsilon subunit and relat	99.87
PF00929	164	RNase_T: Exonuclease; InterPro: IPR013520 This ent	99.87
cd06127	159	DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh	99.86
cd06138	183	ExoI_N N-terminal DEDDh 3'-5' exonuclease domain o	99.86
PTZ00315	582	2'-phosphotransferase; Provisional	99.86
PRK00448	1437	polC DNA polymerase III PolC; Validated	99.83
cd06135	173	Orn DEDDh 3'-5' exonuclease domain of oligoribonuc	99.82
PRK11779	476	sbcB exonuclease I; Provisional	99.82
PRK05359	181	oligoribonuclease; Provisional	99.81
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.69
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	99.61
COG5018	210	KapD Inhibitor of the KinA pathway to sporulation,	99.46
KOG2462	279	consensus C2H2-type Zn-finger protein [Transcripti	99.43
KOG0542	280	consensus Predicted exonuclease [Replication, reco	99.4
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.14
KOG3576	267	consensus Ovo and related transcription factors [T	99.04
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	99.01
KOG1074	958	consensus Transcriptional repressor SALM [Transcri	99.01
KOG3623	1007	consensus Homeobox transcription factor SIP1 [Tran	98.98
KOG3608	467	consensus Zn finger proteins [General function pre	98.98
COG1949	184	Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA	98.96
KOG3242	208	consensus Oligoribonuclease (3'->5' exoribonucleas	98.94
COG2925	475	SbcB Exonuclease I [DNA replication, recombination	98.84
PHA02768	55	hypothetical protein; Provisional	98.67
cd05160	199	DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain	98.66
KOG3608	467	consensus Zn finger proteins [General function pre	98.63
PHA00733	128	hypothetical protein	98.59
cd06139	193	DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease	98.58
PF01612	176	DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00	98.52
KOG3576	267	consensus Ovo and related transcription factors [T	98.41
PHA02768	55	hypothetical protein; Provisional	98.21
cd06125	96	DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas	98.14
cd06146	193	mut-7_like_exo DEDDy 3'-5' exonuclease domain of C	98.14
PRK05755	880	DNA polymerase I; Provisional	98.13
PHA00733	128	hypothetical protein	98.11
PLN03086	567	PRLI-interacting factor K; Provisional	98.04
cd05780	195	DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease dom	97.89
cd06141	170	WRN_exo DEDDy 3'-5' exonuclease domain of WRN and	97.84
PHA00732	79	hypothetical protein	97.81
PHA00616	44	hypothetical protein	97.77
PHA00616	44	hypothetical protein	97.75
cd06129	161	RNaseD_like DEDDy 3'-5' exonuclease domain of RNas	97.7
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.67
cd05781	188	DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of	97.63
COG0349	361	Rnd Ribonuclease D [Translation, ribosomal structu	97.63
PF13482	164	RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A	97.61
PRK10829	373	ribonuclease D; Provisional	97.55
KOG3993	500	consensus Transcription factor (contains Zn finger	97.55
KOG3993	500	consensus Transcription factor (contains Zn finger	97.54
TIGR01388	367	rnd ribonuclease D. This model describes ribonucle	97.41
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.41
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	97.3
cd00007	155	35EXOc 3'-5' exonuclease. The 35EXOc domain is res	97.29
cd05779	204	DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domai	97.26
cd05784	193	DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of	97.26
PLN03086	567	PRLI-interacting factor K; Provisional	97.24
cd06148	197	Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro	97.18
cd05785	207	DNA_polB_like2_exo Uncharacterized bacterial subgr	97.12
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	97.07
KOG0304	239	consensus mRNA deadenylase subunit [RNA processing	97.0
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.94
cd05783	204	DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of	96.82
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	96.8
smart00474	172	35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo	96.65
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.6
PF04857	262	CAF1: CAF1 family ribonuclease; InterPro: IPR00694	96.39
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	96.37
cd05777	230	DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain	96.26
COG5189	423	SFP1 Putative transcriptional repressor regulating	96.2
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	96.13
PF10108	209	DNA_pol_B_exo2: Predicted 3'-5' exonuclease relate	96.12
PHA00732	79	hypothetical protein	96.07
smart00355	26	ZnF_C2H2 zinc finger.	96.04
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	95.93
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	95.88
cd06142	178	RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon	95.86
PRK05762	786	DNA polymerase II; Reviewed	95.76
cd05782	208	DNA_polB_like1_exo Uncharacterized bacterial subgr	95.75
PHA02528	881	43 DNA polymerase; Provisional	95.57
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	95.46
COG0749	593	PolA DNA polymerase I - 3'-5' exonuclease and poly	95.44
cd05778	231	DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease	95.35
smart00355	26	ZnF_C2H2 zinc finger.	95.33
cd06140	178	DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5'	95.22
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	95.15
KOG1798	2173	consensus DNA polymerase epsilon, catalytic subuni	95.03
PTZ00166	1054	DNA polymerase delta catalytic subunit; Provisiona	95.01
cd05776	234	DNA_polB_alpha_exo inactive DEDDy 3'-5' exonucleas	94.58
KOG4793	318	consensus Three prime repair exonuclease [Replicat	94.35
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	94.21
cd06147	192	Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y	94.18
TIGR00593	887	pola DNA polymerase I. This family is based on the	94.16
smart00486	471	POLBc DNA polymerase type-B family. DNA polymerase	93.57
cd09018	150	DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease	93.52
PRK04860	160	hypothetical protein; Provisional	93.52
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	93.51
PHA02570	220	dexA exonuclease; Provisional	93.48
KOG3657	1075	consensus Mitochondrial DNA polymerase gamma, cata	93.17
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	93.08
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	93.02
PHA02524	498	43A DNA polymerase subunit A; Provisional	93.01
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	92.95
COG3359	278	Predicted exonuclease [DNA replication, recombinat	92.4
COG0417	792	PolB DNA polymerase elongation subunit (family B)	91.81
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	91.75
PF13909	24	zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W	91.37
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	91.13
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	91.08
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	89.29
TIGR03491	457	RecB family nuclease, putative, TM0106 family. Mem	89.19
COG1198	730	PriA Primosomal protein N' (replication factor Y)	87.49
PRK04860	160	hypothetical protein; Provisional	87.28
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	86.76
PF03104	325	DNA_pol_B_exo1: DNA polymerase family B, exonuclea	86.59
COG5048	467	FOG: Zn-finger [General function prediction only]	86.34
KOG2231	669	consensus Predicted E3 ubiquitin ligase [Posttrans	84.67
TIGR00622	112	ssl1 transcription factor ssl1. This family is bas	83.62
PF09538	108	FYDLN_acid: Protein of unknown function (FYDLN_aci	83.28
PRK14873	665	primosome assembly protein PriA; Provisional	82.52
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	81.92
KOG1146	1406	consensus Homeobox protein [General function predi	81.25
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	80.48

>KOG2249 consensus 3'-5' exonuclease [Replication, recombination and repair]

Probab=100.00  E-value=4.1e-40  Score=283.46  Aligned_cols=269  Identities=42%  Similarity=0.694  Sum_probs=215.9

Q ss_pred             cccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccccccCChhhHH
Q 019380           16 KCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLI   95 (342)
Q Consensus        16 ~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~   95 (342)
                      +|..|.+.|.-+..+-.|+ +-.|....++|..|.+.......+..++..+.+= .|...|+...|..|.-.-......+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~~~k~~~~~~~~~~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   79 (280)
T KOG2249|consen    2 KASSCAQQFNKKEHLPNHK-VSRHKLHERKCGKCKKVARSFESNEEGLIAPLPK-EGKNIFSQRGNRFKATIKASPGKRR   79 (280)
T ss_pred             CccHHHHHhCccccCcccc-chhhccCcchhhhHHHhccCcccccccccCCCCc-ccCccccchhhHHHhhHhhcCCcch
Confidence            3566777787777666676 2225544558888888888888888887554443 6666677666666544333344444


Q ss_pred             HHHhhcCCCCCCCCcccccccccccCCCCcceecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccc
Q 019380           96 KHKEACSLSAPVPFKISGAIDEKRTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYE  175 (342)
Q Consensus        96 ~H~~~h~~~~~~~~~~c~~~~~~~~~~~~~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~  175 (342)
                      .|+..+.+..+..+..   ..+....+..++||+||||.|.|+++..+++++++|||..|.++|+.||+|..+|.+|.|+
T Consensus        80 ~~~~~~~~~~~~~~~~---~k~s~~~~~~r~vAmDCEMVG~Gp~G~~s~lARvSIVN~~G~VvyDkyVkP~~~VtDyRT~  156 (280)
T KOG2249|consen   80 IHQGSCQASCRMAALG---SKDSRMGSLTRVVAMDCEMVGVGPDGRESLLARVSIVNYHGHVVYDKYVKPTEPVTDYRTR  156 (280)
T ss_pred             hhhcccCCCccccccc---hhhccccccceEEEEeeeEeccCCCccceeeeEEEEeeccCcEeeeeecCCCcccccceee
Confidence            4444444332222221   2222223334699999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHhhhcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccccCCCcceeeccccccccc--c
Q 019380          176 VTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMK--T  253 (342)
Q Consensus       176 i~GIt~e~l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~--~  253 (342)
                      ++||++|.+.+|++|+.|+.+++++|              .|+|||||.+.+||..|.+.||...+.||+.+.++..  .
T Consensus       157 vSGIrpehm~~A~pf~~aQ~ev~klL--------------~gRIlVGHaLhnDl~~L~l~hp~s~iRDTs~~~pl~k~~~  222 (280)
T KOG2249|consen  157 VSGIRPEHMRDAMPFKVAQKEVLKLL--------------KGRILVGHALHNDLQALKLEHPRSMIRDTSKYPPLMKLLS  222 (280)
T ss_pred             ecccCHHHhccCccHHHHHHHHHHHH--------------hCCEEeccccccHHHHHhhhCchhhhcccccCchHHHHhh
Confidence            99999999999999999999999999              9999999999999999999999999999999888776  5


Q ss_pred             CCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhhhhhh
Q 019380          254 NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEI  303 (342)
Q Consensus       254 ~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~~~~~  303 (342)
                      .....||+.|++.+||+.||.+.|++++||++||+||.++..+|++....
T Consensus       223 ~~~tpSLK~Lt~~~Lg~~IQ~GeHsSvEDA~AtM~LY~~vk~qwe~~~~r  272 (280)
T KOG2249|consen  223 KKATPSLKKLTEALLGKDIQVGEHSSVEDARATMELYKRVKVQWEKIEAR  272 (280)
T ss_pred             ccCCccHHHHHHHHhchhhhccccCcHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            67789999999999999999999999999999999999999999885443

>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins

Probab=100.00  E-value=1.8e-32  Score=229.14  Aligned_cols=150  Identities=39%  Similarity=0.655  Sum_probs=133.4

Q ss_pred             eecccccccccCCC-cccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcCC
Q 019380          127 VAMDCEMVGGGSNG-TLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE  205 (342)
Q Consensus       127 v~~D~Ettg~~~~~-~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~~~~  205 (342)
                      |++||||||+++.+ ..++ +++++|+.+|.++|+++|+|..+++++++.+||||++|++++|++++++++|.+|+    
T Consensus         1 v~~D~EttGl~~~~~~~~i-~~i~~v~~~g~~~~~~lv~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~l~~~l----   75 (157)
T cd06149           1 VAIDCEMVGTGPGGRESEL-ARCSIVNYHGDVLYDKYIRPEGPVTDYRTRWSGIRRQHLVNATPFAVAQKEILKIL----   75 (157)
T ss_pred             CEEEeEeccccCCCCeEEE-EEEEEEeCCCCEEEEEeECCCCccCccceECCCCCHHHHhcCCCHHHHHHHHHHHc----
Confidence            58999999998654 4555 89999998999999999999999999999999999999999999999999999999    


Q ss_pred             CccccccCCCCCeEEEeeCchhhhhhccccCCCcceeecccc--cccc--ccCCCCccHHHHHHHHhCCcCCCC--CCCc
Q 019380          206 STGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKY--RPLM--KTNLVSHSLKYLTRTYLGYDIQSG--VHDP  279 (342)
Q Consensus       206 ~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l--~~~~--~~~~~~~~L~~l~~~~~~~~~~~~--~H~A  279 (342)
                                +++||||||+.||++||++.++...++||..+  .+..  +|...+++|+.|+++|+|..++.+  +|+|
T Consensus        76 ----------~~~vlV~Hn~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~~p~~~~~~L~~L~~~~~~~~i~~~~~~H~A  145 (157)
T cd06149          76 ----------KGKVVVGHAIHNDFKALKYFHPKHMTRDTSTIPLLNRKAGFPENCRVSLKVLAKRLLHRDIQVGRQGHSS  145 (157)
T ss_pred             ----------CCCEEEEeCcHHHHHHhcccCCCcCEEECcccccchhhcCCcccCChhHHHHHHHHcChhhcCCCCCcCc
Confidence                      88999999999999999988877778999875  3322  566678999999999987777653  7999


Q ss_pred             HHHHHHHHHHHH
Q 019380          280 YEDCVSVMRLYK  291 (342)
Q Consensus       280 ~~Da~~t~~l~~  291 (342)
                      ++||++|++||+
T Consensus       146 l~DA~at~~l~~  157 (157)
T cd06149         146 VEDARATMELYK  157 (157)
T ss_pred             HHHHHHHHHHhC
Confidence            999999999984

Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20) is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. It was also independently identified by its response to estrogen and was called HEM45 (human estrogen regulated transcript). ISG20 is a DEDDh-type DnaQ-like 3'-5' exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ISG20 may be a major effector of innate immunity against pathogens including viruses, bacteria, and parasites. It is located in promyelocytic leukemia (PML) nuclear bodies, sites for oncogenic DNA viral transcription and repli

>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins

Probab=100.00  E-value=3.1e-32  Score=226.08  Aligned_cols=146  Identities=38%  Similarity=0.624  Sum_probs=132.0

Q ss_pred             eecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCC-ChHHHHHHHHHHHhcCC
Q 019380          127 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAM-PLKEVKDKILEILNNGE  205 (342)
Q Consensus       127 v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~-~~~~v~~~~~~~l~~~~  205 (342)
                      +++||||+|.+..  .++ +++.+|+.+|+++|++||+|..+++++++++||||++||+++| ++.+|+++|.+|+    
T Consensus         1 ~~iD~E~~g~~~g--~ei-~~i~~v~~~~~~~f~~lv~P~~~i~~~~t~itGIt~~~l~~a~~~~~~v~~~~~~fl----   73 (150)
T cd06145           1 FALDCEMCYTTDG--LEL-TRVTVVDENGKVVLDELVKPDGEIVDYNTRFSGITEEMLENVTTTLEDVQKKLLSLI----   73 (150)
T ss_pred             CEEeeeeeeecCC--CEE-EEEEEEeCCCCEEEEEeECCCCccchhccCcCCCCHHHhccCCCCHHHHHHHHHHHh----
Confidence            5799999998643  566 9999999999999999999999999999999999999999995 9999999999999    


Q ss_pred             CccccccCCCC-CeEEEeeCchhhhhhccccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCC--CCCCcHHH
Q 019380          206 STGRLMLDDGK-ARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS--GVHDPYED  282 (342)
Q Consensus       206 ~~~~~~~~~~~-~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~--~~H~A~~D  282 (342)
                                + +.+|||||+.||+.||+...+.  ++||+.+++...+...+++|+.||++|+|..++.  ++|||++|
T Consensus        74 ----------~~~~vlVgHn~~fD~~fL~~~~~~--~iDT~~l~r~~~~~~~~~~L~~L~~~~~~~~i~~~~~~H~Al~D  141 (150)
T cd06145          74 ----------SPDTILVGHSLENDLKALKLIHPR--VIDTAILFPHPRGPPYKPSLKNLAKKYLGRDIQQGEGGHDSVED  141 (150)
T ss_pred             ----------CCCCEEEEcChHHHHHHhhccCCC--EEEcHHhccccCCCCCChhHHHHHHHHCCcceeCCCCCCCcHHH
Confidence                      5 7899999999999999976654  8999999998877667899999999998887763  68999999


Q ss_pred             HHHHHHHHH
Q 019380          283 CVSVMRLYK  291 (342)
Q Consensus       283 a~~t~~l~~  291 (342)
                      |++|++||.
T Consensus       142 A~~t~~l~~  150 (150)
T cd06145         142 ARAALELVK  150 (150)
T ss_pred             HHHHHHHhC
Confidence            999999983

This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T.

>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins

Probab=99.98  E-value=4.1e-32  Score=226.11  Aligned_cols=150  Identities=51%  Similarity=0.859  Sum_probs=134.7

Q ss_pred             eecccccccccCCC-cccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcCC
Q 019380          127 VAMDCEMVGGGSNG-TLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE  205 (342)
Q Consensus       127 v~~D~Ettg~~~~~-~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~~~~  205 (342)
                      |++||||||+++.. .+++ +.+.+++..|.++|+++|+|..+++.+++.+||||++||+++|++.+++++|.+|+    
T Consensus         1 v~lD~EttGl~~~~~~~~i-~~v~~v~~~~~~~~~~~v~P~~~i~~~~~~ihGIt~~~v~~a~~~~~~~~~l~~~l----   75 (152)
T cd06144           1 VALDCEMVGVGPDGSESAL-ARVSIVNEDGNVVYDTYVKPQEPVTDYRTAVSGIRPEHLKDAPDFEEVQKKVAELL----   75 (152)
T ss_pred             CEEEEEeecccCCCCEEEE-EEEEEEeCCCCEEEEEEECCCCCCCcccccCCCCCHHHHcCCCCHHHHHHHHHHHh----
Confidence            58999999997653 4555 88999988999999999999999999999999999999999999999999999999    


Q ss_pred             CccccccCCCCCeEEEeeCchhhhhhccccCCCcceeeccccccccccC-CCCccHHHHHHHHhCCcCCCCCCCcHHHHH
Q 019380          206 STGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTN-LVSHSLKYLTRTYLGYDIQSGVHDPYEDCV  284 (342)
Q Consensus       206 ~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~-~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~  284 (342)
                                ++.+|||||+.||+.||+...+...++||..+.....+. ..+++|+.||++|+|++++.++|||++||+
T Consensus        76 ----------~~~vlVgHn~~fD~~~L~~~~~~~~~~dt~~l~~~~~~~~~~~~sL~~l~~~~lgi~~~~~~H~Al~DA~  145 (152)
T cd06144          76 ----------KGRILVGHALKNDLKVLKLDHPKKLIRDTSKYKPLRKTAKGKSPSLKKLAKQLLGLDIQEGEHSSVEDAR  145 (152)
T ss_pred             ----------CCCEEEEcCcHHHHHHhcCcCCCccEEEeEEeeccccccCCCChhHHHHHHHHcCcccCCCCcCcHHHHH
Confidence                      779999999999999999888878899999887665442 468999999999889998767999999999


Q ss_pred             HHHHHHH
Q 019380          285 SVMRLYK  291 (342)
Q Consensus       285 ~t~~l~~  291 (342)
                      +|++||+
T Consensus       146 at~~l~~  152 (152)
T cd06144         146 AAMRLYR  152 (152)
T ss_pred             HHHHHhC
Confidence            9999984

This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clus

>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2

Probab=99.97  E-value=4.3e-31  Score=219.40  Aligned_cols=149  Identities=30%  Similarity=0.467  Sum_probs=132.8

Q ss_pred             eecccccccccC-------CCcc--------cccceEEeec----CCCCeEEeeecCCCCCccccccccCCCCHhhhcCC
Q 019380          127 VAMDCEMVGGGS-------NGTL--------DLCARVCLVD----EDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNA  187 (342)
Q Consensus       127 v~~D~Ettg~~~-------~~~~--------~il~~v~vv~----~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~  187 (342)
                      +++|||+.|.++       ++..        ++ +++++||    .+|+++++.||+|..+|.+|.|+++|||++++.++
T Consensus         1 ~a~d~e~v~~~~~~~~~~~~g~~~~~~~~~~~L-aRVsiVd~~~~~~g~vllD~~VkP~~~V~DYrT~~SGIt~~~L~~a   79 (174)
T cd06143           1 VAIDAEFVKLKPEETEIRSDGTKSTIRPSQMSL-ARVSVVRGEGELEGVPFIDDYISTTEPVVDYLTRFSGIKPGDLDPK   79 (174)
T ss_pred             CceeeeEEEecchhceecCCCcEeeeccCCcee-EEEEEEcCCCCcCCCEEEeeeECCCCCccCcCccccccCHHHcCcc
Confidence            467888877664       4444        44 9999999    68999999999999999999999999999999987


Q ss_pred             C------ChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccccCCCcceeeccccccccccCCCCccHH
Q 019380          188 M------PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLK  261 (342)
Q Consensus       188 ~------~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~~~~~L~  261 (342)
                      .      ++.++..++.++|             +.++|||||.+++||++|++.+|...++||+.+++..  ...+++|+
T Consensus        80 ~~~~~~~t~~~v~~~l~~li-------------~~~tILVGHsL~nDL~aL~l~hp~~~viDTa~l~~~~--~~r~~sLk  144 (174)
T cd06143          80 TSSKNLTTLKSAYLKLRLLV-------------DLGCIFVGHGLAKDFRVINIQVPKEQVIDTVELFHLP--GQRKLSLR  144 (174)
T ss_pred             ccccccCCHHHHHHHHHHHc-------------CCCCEEEeccchhHHHHhcCcCCCcceEEcHHhccCC--CCCChhHH
Confidence            4      6999999999998             3689999999999999999999988899999998764  33579999


Q ss_pred             HHHHHHhCCcCCCCCCCcHHHHHHHHHHHH
Q 019380          262 YLTRTYLGYDIQSGVHDPYEDCVSVMRLYK  291 (342)
Q Consensus       262 ~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~  291 (342)
                      .|++.|||..||.+.|++++||+++|+||+
T Consensus       145 ~La~~~L~~~IQ~~~HdSvEDArAam~Ly~  174 (174)
T cd06143         145 FLAWYLLGEKIQSETHDSIEDARTALKLYR  174 (174)
T ss_pred             HHHHHHcCCcccCCCcCcHHHHHHHHHHhC
Confidence            999999999999999999999999999984

PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. PAN catalyzes the deadenylation of poly(A) tails, which are initially synthesized to default lengths of 70 to 90, to mRNA-specific lengths of 55 to 71. Pab1p and PAN also play a role in the export and decay of mRNA. PAN2 contains a DEDDh-type DnaQ-like 3'-5' exonuclease domain with three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.

>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins

Probab=99.97  E-value=1.9e-30  Score=218.10  Aligned_cols=147  Identities=32%  Similarity=0.519  Sum_probs=127.2

Q ss_pred             eecccccccccCCCcccccceEEeecC-CCCeEEeeecCCCCCccccccccCCCCHhhhcCCCC-------hHHHHHHHH
Q 019380          127 VAMDCEMVGGGSNGTLDLCARVCLVDE-DENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMP-------LKEVKDKIL  198 (342)
Q Consensus       127 v~~D~Ettg~~~~~~~~il~~v~vv~~-~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~-------~~~v~~~~~  198 (342)
                      |++||||||+++.. .++ .++.+|+. +|+++|+++|+|..+|+++++++||||++||+++|+       +++++++|.
T Consensus         1 v~lD~EttGl~~~~-d~i-i~Ig~V~v~~g~i~~~~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~~~~~~~~~~~~~~~   78 (161)
T cd06137           1 VALDCEMVGLADGD-SEV-VRISAVDVLTGEVLIDSLVRPSVRVTDWRTRFSGVTPADLEEAAKAGKTIFGWEAARAALW   78 (161)
T ss_pred             CEEEeeeeeEcCCC-CEE-EEEEEEEcCCCeEEEeccccCCCCCCccceeccCCCHHHHhhhhhcCCccccHHHHHHHHH
Confidence            58999999997532 233 56666665 888899999999999999999999999999999875       358999999


Q ss_pred             HHHhcCCCccccccCCCCC-eEEEeeCchhhhhhccccCCCcceeeccccccccccCC---CCccHHHHHHHHhCCcCCC
Q 019380          199 EILNNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNL---VSHSLKYLTRTYLGYDIQS  274 (342)
Q Consensus       199 ~~l~~~~~~~~~~~~~~~~-~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~---~~~~L~~l~~~~~~~~~~~  274 (342)
                      +|+              ++ .+|||||+.||++||+...+  +++||+.+++.+.+..   .+++|+.||+.|+|++++.
T Consensus        79 ~~i--------------~~~~vlVgHn~~fD~~fL~~~~~--~~iDT~~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~  142 (161)
T cd06137          79 KFI--------------DPDTILVGHSLQNDLDALRMIHT--RVVDTAILTREAVKGPLAKRQWSLRTLCRDFLGLKIQG  142 (161)
T ss_pred             Hhc--------------CCCcEEEeccHHHHHHHHhCcCC--CeeEehhhhhhccCCCcCCCCccHHHHHHHHCCchhcC
Confidence            999              66 89999999999999997654  4899999999988765   6899999999988999865


Q ss_pred             --CCCCcHHHHHHHHHHHH
Q 019380          275 --GVHDPYEDCVSVMRLYK  291 (342)
Q Consensus       275 --~~H~A~~Da~~t~~l~~  291 (342)
                        ++|+|++||++|++||.
T Consensus       143 ~~~~H~A~~DA~at~~l~~  161 (161)
T cd06137         143 GGEGHDSLEDALAAREVVL  161 (161)
T ss_pred             CCCCCCcHHHHHHHHHHhC
Confidence              48999999999999983

This group is composed of eukaryotic exoribonucleases that include PAN2, RNA exonuclease 1 (REX1 or Rex1p), REX3 (Rex3p), REX4 (or Rex4p), ISG20, and similar proteins. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. REX proteins are required for the processing and maturation of many RNA species, and ISG20 is an interferon-induced antiviral exonuclease with a strong prefere

>PRK07942 DNA polymerase III subunit epsilon; Provisional

Probab=99.95  E-value=1.3e-28  Score=218.48  Aligned_cols=185  Identities=21%  Similarity=0.217  Sum_probs=149.2

Q ss_pred             CCCcceecccccccccC--CCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcC-CCChHHHHHH
Q 019380          122 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKN-AMPLKEVKDK  196 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~-~~~~~~v~~~  196 (342)
                      ...++++||+||||+++  ++++++ +.+.+ +.+|.+  .++++|+|..+|++.++.+||||++++.+ ++++.+++++
T Consensus         4 ~~~~~vv~D~ETTGl~p~~d~Iiei-g~v~v-~~~g~~~~~~~~lv~P~~~i~~~a~~IhGIt~e~l~~~g~~~~~vl~e   81 (232)
T PRK07942          4 HPGPLAAFDLETTGVDPETARIVTA-ALVVV-DADGEVVESREWLADPGVEIPEEASAVHGITTEYARAHGRPAAEVLAE   81 (232)
T ss_pred             ccCcEEEEEeccCCCCCCCCeeEEE-EEEEE-eCCCccccceEEEECCCCCCCHHHHHHhCCCHHHHHhhCCCHHHHHHH
Confidence            45679999999999874  456666 55544 444555  48999999999999999999999999975 7889999999


Q ss_pred             HHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc-----C---CCcceeeccccccccccC-CCCccHHHHHHHH
Q 019380          197 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-----Y---PDHMLRDTAKYRPLMKTN-LVSHSLKYLTRTY  267 (342)
Q Consensus       197 ~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-----~---~~~~~~Dt~~l~~~~~~~-~~~~~L~~l~~~~  267 (342)
                      |..+|.+...         ++.+|||||+.||+.||+..     .   ....++|+..+.+.+.+. ..+++|.+|++.|
T Consensus        82 ~~~~l~~~~~---------~~~~lVahNa~FD~~fL~~~~~r~~~~~~~~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~  152 (232)
T PRK07942         82 IADALREAWA---------RGVPVVVFNAPYDLTVLDRELRRHGLPSLVPGPVIDPYVIDKAVDRYRKGKRTLTALCEHY  152 (232)
T ss_pred             HHHHHHHHhh---------cCCEEEEeCcHhhHHHHHHHHHHcCCCCccCCcEeeHHHHHhhhhcccCCCCCHHHHHHHc
Confidence            9998832211         56799999999999999822     1   125689999888766553 3578999999998


Q ss_pred             hCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCchhhHHhhhCChhhhhhccCCceeee
Q 019380          268 LGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSDYRCW  339 (342)
Q Consensus       268 ~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (342)
                       |++. .++|+|++||++|++||.++.++..+                    +..+++++|.+++..|++.|
T Consensus       153 -gi~~-~~aH~Al~Da~ata~l~~~l~~~~~~--------------------l~~~~~~~l~~~q~~~~~~~  202 (232)
T PRK07942        153 -GVRL-DNAHEATADALAAARVAWALARRFPE--------------------LAALSPAELHELQAVWYAEQ  202 (232)
T ss_pred             -CCCC-CCCCChHHHHHHHHHHHHHHHHHHHH--------------------hhcCCHHHHHHHHHHHHHHH
Confidence             9985 45999999999999999999988755                    67889999999999888765

>PRK07740 hypothetical protein; Provisional

Probab=99.95  E-value=1.3e-27  Score=213.49  Aligned_cols=159  Identities=28%  Similarity=0.339  Sum_probs=136.8

Q ss_pred             CCCcceecccccccccC---CCcccccceEEeecCCCCe---EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHH
Q 019380          122 RGPKAVAMDCEMVGGGS---NGTLDLCARVCLVDEDENV---IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD  195 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~~---~~~~~il~~v~vv~~~~~~---~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~  195 (342)
                      ...++|+||+||||.++   ++++++ +++.+.  ++.+   .|+.+|+|..++++.+.++||||+++|+++|++.+|+.
T Consensus        57 ~~~~~vv~D~ETTGl~p~~~deIIeI-gaV~~~--~~~i~~~~f~~lv~P~~~i~~~~~~ltGIt~e~l~~ap~~~evl~  133 (244)
T PRK07740         57 TDLPFVVFDLETTGFSPQQGDEILSI-GAVKTK--GGEVETDTFYSLVKPKRPIPEHILELTGITAEDVAFAPPLAEVLH  133 (244)
T ss_pred             cCCCEEEEEEeCCCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEEeCcCCCCChhheeccCCCHHHHhCCCCHHHHHH
Confidence            45679999999999875   457777 777663  3333   48899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccc------cCCC-cceeeccccccccccCCCCccHHHHHHHHh
Q 019380          196 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM------NYPD-HMLRDTAKYRPLMKTNLVSHSLKYLTRTYL  268 (342)
Q Consensus       196 ~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~------~~~~-~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~  268 (342)
                      +|.+|+              ++.+|||||+.||+.||+.      ..+. ..++||..+++.+.+....++|++|+.+| 
T Consensus       134 ~f~~fi--------------~~~~lVahna~fD~~fL~~~~~~~~~~~~~~~~iDt~~l~r~l~~~~~~~sL~~l~~~~-  198 (244)
T PRK07740        134 RFYAFI--------------GAGVLVAHHAGHDKAFLRHALWRTYRQPFTHRLIDTMFLTKLLAHERDFPTLDDALAYY-  198 (244)
T ss_pred             HHHHHh--------------CCCEEEEeCHHHHHHHHHHHHHHhcCCCcCCCeechHHHHHHHcCCCCCCCHHHHHHHC-
Confidence            999999              7889999999999999972      1222 57899999999888877789999999987 


Q ss_pred             CCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          269 GYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       269 ~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      |+++. ++|+|++||++|++||.+++.+..+
T Consensus       199 gi~~~-~~H~Al~Da~ata~l~~~ll~~~~~  228 (244)
T PRK07740        199 GIPIP-RRHHALGDALMTAKLWAILLVEAQQ  228 (244)
T ss_pred             CcCCC-CCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            99964 5899999999999999999988655

>PRK05711 DNA polymerase III subunit epsilon; Provisional

Probab=99.94  E-value=3.1e-27  Score=209.49  Aligned_cols=158  Identities=22%  Similarity=0.327  Sum_probs=134.3

Q ss_pred             CCcceecccccccccC---CCcccccceEEeecCCC-CeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHH
Q 019380          123 GPKAVAMDCEMVGGGS---NGTLDLCARVCLVDEDE-NVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  198 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~---~~~~~il~~v~vv~~~~-~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~  198 (342)
                      .+++|++|+||||+++   +++++| +.+.+.+... ...|+.+|+|..++++.++++||||+++|.++|+|.+|+++|.
T Consensus         3 ~~r~vvlDtETTGldp~~~drIIEI-GaV~v~~~~~~~~~f~~~i~P~~~i~~~a~~VHGIT~e~l~~~p~f~ev~~~f~   81 (240)
T PRK05711          3 IMRQIVLDTETTGLNQREGHRIIEI-GAVELINRRLTGRNFHVYIKPDRLVDPEALAVHGITDEFLADKPTFAEVADEFL   81 (240)
T ss_pred             CCeEEEEEeeCCCcCCCCCCeEEEE-EEEEEECCEEeccEEEEEECcCCcCCHHHhhhcCCCHHHHcCCCCHHHHHHHHH
Confidence            4679999999999874   467888 8888764422 1258999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc-------CC----CcceeeccccccccccCCCCccHHHHHHHH
Q 019380          199 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YP----DHMLRDTAKYRPLMKTNLVSHSLKYLTRTY  267 (342)
Q Consensus       199 ~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-------~~----~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~  267 (342)
                      +|+              ++.+|||||+.||+.||+..       .|    ...++||..+++.++|. .+++|+.||++|
T Consensus        82 ~fi--------------~~~~lVaHNa~FD~~fL~~el~r~g~~~~~~~~~~~~iDTl~lar~~~p~-~~~~L~aL~~~~  146 (240)
T PRK05711         82 DFI--------------RGAELIIHNAPFDIGFMDYEFALLGRDIPKTNTFCKVTDTLAMARRMFPG-KRNSLDALCKRY  146 (240)
T ss_pred             HHh--------------CCCEEEEEccHHhHHHHHHHHHHhCCCCCcccccCceeeHHHHHHHHcCC-CCCCHHHHHHHC
Confidence            999              88899999999999999822       33    14589999999988886 467999999999


Q ss_pred             hCCcCCC-CCCCcHHHHHHHHHHHHHHHhhh
Q 019380          268 LGYDIQS-GVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       268 ~~~~~~~-~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                       |++... ..|+|+.||.++++||..+....
T Consensus       147 -gi~~~~r~~H~AL~DA~~~A~v~~~l~~~~  176 (240)
T PRK05711        147 -GIDNSHRTLHGALLDAEILAEVYLAMTGGQ  176 (240)
T ss_pred             -CCCCCCCCCCCHHHHHHHHHHHHHHHHCcc
Confidence             887432 26999999999999999998763

>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial

Probab=99.94  E-value=3.6e-27  Score=208.08  Aligned_cols=161  Identities=21%  Similarity=0.275  Sum_probs=136.3

Q ss_pred             cceecccccccccC---CCcccccceEEeecCCC-CeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 019380          125 KAVAMDCEMVGGGS---NGTLDLCARVCLVDEDE-NVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  200 (342)
Q Consensus       125 ~~v~~D~Ettg~~~---~~~~~il~~v~vv~~~~-~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~  200 (342)
                      ++|++|+||||+++   ++++++ +.+.+++... ...|+.+|+|..++++.++++||||+++++++|+|.+|+.+|.+|
T Consensus         1 r~vvlD~ETTGl~p~~~d~IIEI-gav~~~~~~~~~~~f~~~i~P~~~i~~~a~~vhGIt~e~l~~~p~f~ev~~~f~~f   79 (225)
T TIGR01406         1 RQIILDTETTGLDPKGGHRIVEI-GAVELVNRMLTGDNFHVYVNPERDMPAEAAKVHGITDEFLADKPKFKEIADEFLDF   79 (225)
T ss_pred             CEEEEEeeCCCcCCCCCCeEEEE-EEEEEECCcEecceEEEEECcCCCCCHHHHhccCCCHHHHhCCCCHHHHHHHHHHH
Confidence            47899999999875   467888 8887765321 125999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccccccCCCCCeEEEeeCchhhhhhcccc-------CC----CcceeeccccccccccCCCCccHHHHHHHHhC
Q 019380          201 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YP----DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLG  269 (342)
Q Consensus       201 l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-------~~----~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~  269 (342)
                      |              ++.+|||||+.||+.||+..       .+    ...++||+.+++..+|. .+++|+.||++| |
T Consensus        80 i--------------~~~~lVaHNa~FD~~fL~~el~r~g~~~~~~~~~~~~iDTl~lar~~~p~-~~~~L~~L~~~~-g  143 (225)
T TIGR01406        80 I--------------GGSELVIHNAAFDVGFLNYELERLGPTIKKIGEFCRVIDTLAMARERFPG-QRNSLDALCKRF-K  143 (225)
T ss_pred             h--------------CCCEEEEEecHHHHHHHHHHHHHhCCCCcccccCCCEEEHHHHHHHHcCC-CCCCHHHHHHhc-C
Confidence            9              88899999999999999821       12    15799999999988876 478999999999 8


Q ss_pred             CcCCCC-CCCcHHHHHHHHHHHHHHHhhhhhhhh
Q 019380          270 YDIQSG-VHDPYEDCVSVMRLYKRFRRQDHQVEE  302 (342)
Q Consensus       270 ~~~~~~-~H~A~~Da~~t~~l~~~~~~~~~~~~~  302 (342)
                      ++.... .|+|+.||+++++||..+......+..
T Consensus       144 i~~~~r~~H~Al~DA~~~a~v~~~l~~~~~~~~~  177 (225)
T TIGR01406       144 VDNSHRTLHGALLDAHLLAEVYLALTGGQESLLE  177 (225)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHcCCcchhh
Confidence            885432 799999999999999999887765443

This model represents DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease domain as described in pfam model pfam00929. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are excluded from this model, as are smaller proteins, also outside the Proteobacteria, that are similar in size to the epsilon subunit but as different in sequence as are the epsilon-like regions found in Gram-positive bacteria.

>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III

Probab=99.94  E-value=4.4e-27  Score=196.75  Aligned_cols=146  Identities=23%  Similarity=0.333  Sum_probs=130.2

Q ss_pred             ceecccccccccCCCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhc
Q 019380          126 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  203 (342)
Q Consensus       126 ~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~~  203 (342)
                      +|++|+||||...++++++ +.+.+.  .|++  .|+.+|+|..++++.++++||||++++.+++++.+++++|.+|+  
T Consensus         1 ~v~~D~Ettg~~~~~ii~i-g~v~~~--~~~~~~~~~~~i~p~~~~~~~~~~i~GIt~e~l~~~~~~~~v~~~l~~~l--   75 (156)
T cd06130           1 FVAIDFETANADRASACSI-GLVKVR--DGQIVDTFYTLIRPPTRFDPFNIAIHGITPEDVADAPTFPEVWPEIKPFL--   75 (156)
T ss_pred             CEEEEEeCCCCCCCceEEE-EEEEEE--CCEEEEEEEEEeCcCCCCChhhccccCcCHHHHhcCCCHHHHHHHHHHHh--
Confidence            5899999999878888887 777663  4444  48999999999999999999999999999999999999999999  


Q ss_pred             CCCccccccCCCCCeEEEeeCchhhhhhcc-------ccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCCC
Q 019380          204 GESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV  276 (342)
Q Consensus       204 ~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~  276 (342)
                                  ++.++||||+.||+.+|+       +..+..+++|++.+++.+++....++|..|++.| |++++  +
T Consensus        76 ------------~~~~lv~hn~~fD~~~l~~~~~~~g~~~~~~~~idt~~~~~~~~~~~~~~~L~~l~~~~-g~~~~--~  140 (156)
T cd06130          76 ------------GGSLVVAHNASFDRSVLRAALEAYGLPPPPYQYLCTVRLARRVWPLLPNHKLNTVAEHL-GIELN--H  140 (156)
T ss_pred             ------------CCCEEEEeChHHhHHHHHHHHHHcCCCCCCCCEEEHHHHHHHHhccCCCCCHHHHHHHc-CCCcc--C
Confidence                        778999999999999997       3345577999999999988887889999999988 99976  9


Q ss_pred             CCcHHHHHHHHHHHH
Q 019380          277 HDPYEDCVSVMRLYK  291 (342)
Q Consensus       277 H~A~~Da~~t~~l~~  291 (342)
                      |+|++||++|++||.
T Consensus       141 H~Al~Da~~ta~l~~  155 (156)
T cd06130         141 HDALEDARACAEILL  155 (156)
T ss_pred             cCchHHHHHHHHHHh
Confidence            999999999999985

This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser

>PRK07247 DNA polymerase III subunit epsilon; Validated

Probab=99.94  E-value=1e-26  Score=200.24  Aligned_cols=158  Identities=22%  Similarity=0.290  Sum_probs=127.9

Q ss_pred             CCCcceeccccccccc-CCCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHH
Q 019380          122 RGPKAVAMDCEMVGGG-SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  198 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~-~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~  198 (342)
                      ....++++|+||||.+ .++++++ +++.+.  +|.+  .|++||+|..+++.+++++||||++||+++|++.+|+.+|.
T Consensus         3 ~~~~~vvlD~EtTGl~~~~eIIeI-gaV~v~--~g~~~~~f~~lv~P~~~i~~~~~~lhGIt~~~v~~ap~~~evl~~f~   79 (195)
T PRK07247          3 RLETYIAFDLEFNTVNGVSHIIQV-SAVKYD--DHKEVDSFDSYVYTDVPLQSFINGLTGITADKIADAPKVEEVLAAFK   79 (195)
T ss_pred             cCCeEEEEEeeCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEECCCCCCCccceecCCCCHHHHhCCCCHHHHHHHHH
Confidence            3457999999999986 3556666 766663  3443  59999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccccCCCCCeEEEeeCch-hhhhhcccc---CCCcceeeccccc--ccc--ccCCCCccHHHHHHHHhCC
Q 019380          199 EILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLRMN---YPDHMLRDTAKYR--PLM--KTNLVSHSLKYLTRTYLGY  270 (342)
Q Consensus       199 ~~l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~~~---~~~~~~~Dt~~l~--~~~--~~~~~~~~L~~l~~~~~~~  270 (342)
                      +|+              ++.+|||||+. ||+.||+..   .+....+|+....  +..  .+...+++|..||++| |+
T Consensus        80 ~f~--------------~~~~lVaHNa~~fD~~fL~~~g~~~~~~~~idt~~~~~~~~~~~~~~~~~~~L~~La~~~-gi  144 (195)
T PRK07247         80 EFV--------------GELPLIGYNAQKSDLPILAENGLDLSDQYQVDLYDEAFERRSSDLNGIANLKLQTVADFL-GI  144 (195)
T ss_pred             HHH--------------CCCeEEEEeCcHhHHHHHHHcCCCcCCCceeehHHHHHHhhccccCCCCCCCHHHHHHhc-CC
Confidence            999              88899999997 899999832   2223356664322  222  3455689999999998 88


Q ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          271 DIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       271 ~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      +.  .+|+|++||++|+.||.++++..+.
T Consensus       145 ~~--~~HrAl~DA~~ta~v~~~ll~~~~~  171 (195)
T PRK07247        145 KG--RGHNSLEDARMTARVYESFLESDQN  171 (195)
T ss_pred             CC--CCcCCHHHHHHHHHHHHHHHhhccc
Confidence            84  4899999999999999999988654

>PRK09146 DNA polymerase III subunit epsilon; Validated

Probab=99.94  E-value=1.1e-26  Score=206.49  Aligned_cols=159  Identities=19%  Similarity=0.244  Sum_probs=134.0

Q ss_pred             cCCCCcceecccccccccC--CCcccccceEEeecCCCCe----EEeeecCCCCCccccccccCCCCHhhhcCCCChHHH
Q 019380          120 TCRGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV----IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEV  193 (342)
Q Consensus       120 ~~~~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~----~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v  193 (342)
                      ......++++|+||||+++  ++++++ +.+.+.  ++.+    .|+++|+|..+|+..++.+||||+++|.++|++.+|
T Consensus        43 ~~~~~~~vviD~ETTGl~p~~d~IieI-g~v~v~--~~~i~~~~~~~~li~P~~~i~~~~~~IhGIt~e~l~~ap~~~ev  119 (239)
T PRK09146         43 PLSEVPFVALDFETTGLDAEQDAIVSI-GLVPFT--LQRIRCRQARHWVVKPRRPLEEESVVIHGITHSELQDAPDLERI  119 (239)
T ss_pred             CcccCCEEEEEeECCCCCCCCCcEEEE-EEEEEE--CCeEeecceEEEEECCCCCCChhhhhhcCCCHHHHhCCCCHHHH
Confidence            3456789999999999874  567777 776663  3332    578999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc-------CCCcceeeccccccccccCC-----------
Q 019380          194 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YPDHMLRDTAKYRPLMKTNL-----------  255 (342)
Q Consensus       194 ~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-------~~~~~~~Dt~~l~~~~~~~~-----------  255 (342)
                      +++|.+++              ++.++||||+.||+.||+..       ....+++||+.+++.+.+..           
T Consensus       120 l~~l~~~~--------------~~~~lVaHna~FD~~fL~~~l~~~~~~~~~~~~iDTl~Lar~l~~~~~~~~~~~~~~~  185 (239)
T PRK09146        120 LDELLEAL--------------AGKVVVVHYRRIERDFLDQALRNRIGEGIEFPVIDTMEIEARIQRKQAGGLWNRLKGK  185 (239)
T ss_pred             HHHHHHHh--------------CCCEEEEECHHHHHHHHHHHHHHhcCCCCCCceechHHHHHHHcccccccccchhccC
Confidence            99999999              88899999999999999832       12367899999987765432           


Q ss_pred             --CCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhh
Q 019380          256 --VSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       256 --~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                        .+++|.+++..| |++ ..++|+|++||.+|++||..+..+.
T Consensus       186 ~~~~~~L~~l~~~~-gl~-~~~~H~Al~DA~ata~l~~~~~~~~  227 (239)
T PRK09146        186 KPESIRLADSRLRY-GLP-AYSPHHALTDAIATAELLQAQIAHH  227 (239)
T ss_pred             CCCCCCHHHHHHHc-CCC-CCCCCCcHHHHHHHHHHHHHHHHHH
Confidence              568999999998 888 4569999999999999999998875

>PRK08517 DNA polymerase III subunit epsilon; Provisional

Probab=99.94  E-value=2e-26  Score=206.52  Aligned_cols=173  Identities=21%  Similarity=0.289  Sum_probs=142.9

Q ss_pred             CCCCcceecccccccccC--CCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHH
Q 019380          121 CRGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDK  196 (342)
Q Consensus       121 ~~~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~  196 (342)
                      .....++++|+||||..+  +.++++ +++.+.  +|++  .|+++|+|. +++..++++||||++++.++|++.+|+.+
T Consensus        65 ~~~~~~vv~DiETTG~~~~~~~IIEI-GAv~v~--~g~i~~~f~~~v~p~-~ip~~~~~itGIt~e~l~~ap~~~evl~~  140 (257)
T PRK08517         65 IKDQVFCFVDIETNGSKPKKHQIIEI-GAVKVK--NGEIIDRFESFVKAK-EVPEYITELTGITYEDLENAPSLKEVLEE  140 (257)
T ss_pred             CCCCCEEEEEEeCCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEECCC-CCChhhhhhcCcCHHHHcCCCCHHHHHHH
Confidence            355679999999999874  357777 777774  4555  489999996 79999999999999999999999999999


Q ss_pred             HHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccc-----cC--CCcceeeccccccccccCCCCccHHHHHHHHhC
Q 019380          197 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-----NY--PDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLG  269 (342)
Q Consensus       197 ~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-----~~--~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~  269 (342)
                      |.+|+              ++.++||||+.||++||+.     ..  ...+.+||..+++...+. .+++|++|++.+ |
T Consensus       141 f~~fl--------------~~~v~VaHNa~FD~~fL~~~l~r~g~~~~~~~~ldtl~la~~~~~~-~~~~L~~L~~~l-g  204 (257)
T PRK08517        141 FRLFL--------------GDSVFVAHNVNFDYNFISRSLEEIGLGPLLNRKLCTIDLAKRTIES-PRYGLSFLKELL-G  204 (257)
T ss_pred             HHHHH--------------CCCeEEEECHHHHHHHHHHHHHHcCCCCCCCCcEehHHHHHHHccC-CCCCHHHHHHHc-C
Confidence            99999              7789999999999999972     12  225689999998876654 579999999987 9


Q ss_pred             CcCCCCCCCcHHHHHHHHHHHHHHHhhhhhhhhhccCCCCCCCCchhhHHhhhCChhhhhhccCCc
Q 019380          270 YDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNTTGSFDSYKYKELEKMSPNELYQISKSD  335 (342)
Q Consensus       270 ~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  335 (342)
                      ++. ..+|+|++||.+|++||.+++.+.+.                     ...+.++++++++.+
T Consensus       205 i~~-~~~HrAl~DA~ata~ll~~ll~~~~~---------------------~~~t~~~L~~~~k~~  248 (257)
T PRK08517        205 IEI-EVHHRAYADALAAYEIFKICLLNLPS---------------------YIKTTEDLIDFSKTA  248 (257)
T ss_pred             cCC-CCCCChHHHHHHHHHHHHHHHHHhHH---------------------hhcCHHHHHHHhhhc
Confidence            984 36999999999999999999988644                     123567777777754

>PRK06195 DNA polymerase III subunit epsilon; Validated

Probab=99.94  E-value=1.5e-26  Score=213.95  Aligned_cols=154  Identities=18%  Similarity=0.307  Sum_probs=135.5

Q ss_pred             CcceecccccccccCCCcccccceEEeecCCCCe--EEeeecCCCC-CccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 019380          124 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENV--IFHTYVQPQL-PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  200 (342)
Q Consensus       124 ~~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~-~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~  200 (342)
                      +.|++||+||||...+.++++ +.+.+.  +|++  .|++||+|.. .+++.++.+||||++||+++|+|.+|+++|.+|
T Consensus         1 ~~~vviD~ETTg~~~d~IieI-gav~v~--~g~i~~~f~~lv~P~~~~~~~~~~~IhGIT~e~v~~ap~f~ev~~~~~~f   77 (309)
T PRK06195          1 MNFVAIDFETANEKRNSPCSI-GIVVVK--DGEIVEKVHYLIKPKEMRFMPINIGIHGIRPHMVEDELEFDKIWEKIKHY   77 (309)
T ss_pred             CcEEEEEEeCCCCCCCceEEE-EEEEEE--CCEEEEEEEEEECCCCCCCChhheeccCcCHHHHhCCCCHHHHHHHHHHH
Confidence            368999999999878888888 888874  4444  4899999985 578888999999999999999999999999999


Q ss_pred             HhcCCCccccccCCCCCeEEEeeCchhhhhhcc-------ccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCC
Q 019380          201 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ  273 (342)
Q Consensus       201 l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~  273 (342)
                      +              ++.+|||||+.||+.||+       +..|...++||+.+++.+++...+++|..|+..| |+++ 
T Consensus        78 l--------------~~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~idT~~lar~l~~~~~~~~L~~L~~~~-gi~~-  141 (309)
T PRK06195         78 F--------------NNNLVIAHNASFDISVLRKTLELYNIPMPSFEYICTMKLAKNFYSNIDNARLNTVNNFL-GYEF-  141 (309)
T ss_pred             h--------------CCCEEEEECcHHHHHHHHHHHHHhCCCCCCCCEEEHHHHHHHHcCCCCcCCHHHHHHHc-CCCC-
Confidence            9              889999999999999997       2344567899999999988887899999999999 8875 


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhhh
Q 019380          274 SGVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       274 ~~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                       .+|+|++||++|++||..+.++.
T Consensus       142 -~~H~Al~DA~ata~l~~~l~~~~  164 (309)
T PRK06195        142 -KHHDALADAMACSNILLNISKEL  164 (309)
T ss_pred             -cccCCHHHHHHHHHHHHHHHHHh
Confidence             48999999999999999998764

>PRK07983 exodeoxyribonuclease X; Provisional

Probab=99.94  E-value=2.3e-26  Score=201.58  Aligned_cols=146  Identities=18%  Similarity=0.193  Sum_probs=125.4

Q ss_pred             ceecccccccccCCCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhc
Q 019380          126 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  203 (342)
Q Consensus       126 ~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~~  203 (342)
                      +++||+||||++ ..++++ +.+.++  +|++  .|+++++|..+|+..++.+||||++||+++|++.+++++   |+  
T Consensus         2 ~~vlD~ETTGl~-~~IieI-g~v~v~--~~~i~~~~~~lv~P~~~i~~~~~~ihgIt~e~v~~ap~~~ev~~~---~~--   72 (219)
T PRK07983          2 LRVIDTETCGLQ-GGIVEI-ASVDVI--DGKIVNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPH---YY--   72 (219)
T ss_pred             eEEEEEECCCCC-CCCEEE-EEEEEE--CCEEEEEEEEEECcCCCCCHHHhhcCCCCHHHHcCCCCHHHHHHH---Hc--
Confidence            678999999985 457787 777775  4455  589999999999999999999999999999999999887   45  


Q ss_pred             CCCccccccCCCCCeEEEeeCchhhhhhccccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCC----CCCCCc
Q 019380          204 GESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ----SGVHDP  279 (342)
Q Consensus       204 ~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~----~~~H~A  279 (342)
                                  ++.+|||||+.||+.||...  ...++||+.+++.++|... ++|..|+..| |+++.    ..+|||
T Consensus        73 ------------~~~~lVaHNa~FD~~~L~~~--~~~~idTl~lar~l~p~~~-~~l~~L~~~~-~l~~~~~~~~~aHrA  136 (219)
T PRK07983         73 ------------GSEWYVAHNASFDRRVLPEM--PGEWICTMKLARRLWPGIK-YSNMALYKSR-KLNVQTPPGLHHHRA  136 (219)
T ss_pred             ------------CCCEEEEeCcHhhHHHHhCc--CCCcEeHHHHHHHHccCCC-CCHHHHHHHc-CCCCCCCCCCCCCcH
Confidence                        67899999999999999732  2468999999999988754 9999999988 87642    349999


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 019380          280 YEDCVSVMRLYKRFRRQ  296 (342)
Q Consensus       280 ~~Da~~t~~l~~~~~~~  296 (342)
                      ++||++|+.||.++++.
T Consensus       137 l~Da~ata~ll~~l~~~  153 (219)
T PRK07983        137 LYDCYITAALLIDIMNT  153 (219)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999999965

>PRK06807 DNA polymerase III subunit epsilon; Validated

Probab=99.94  E-value=2.2e-26  Score=211.79  Aligned_cols=157  Identities=22%  Similarity=0.407  Sum_probs=138.1

Q ss_pred             CCCcceecccccccccC--CCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHH
Q 019380          122 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  197 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~  197 (342)
                      -...+|+||+||||+++  ++++++ +++.+.  +|++  .|+++|+|..++++.++++||||++||.++|++.+|+++|
T Consensus         6 ~~~~~Vv~DlETTGl~p~~~eIIEI-gaV~v~--~g~i~~~f~~lVkP~~~I~~~a~~ihGIT~e~l~~~~~~~evl~~f   82 (313)
T PRK06807          6 LPLDYVVIDFETTGFNPYNDKIIQV-AAVKYR--NHELVDQFVSYVNPERPIPDRITSLTGITNYRVSDAPTIEEVLPLF   82 (313)
T ss_pred             CCCCEEEEEEECCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEECcCCCCCHhhhccCCCCHHHHhCCCCHHHHHHHH
Confidence            45689999999999874  567777 777663  4555  4899999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc-------ccCCCcceeeccccccccccCCCCccHHHHHHHHhCC
Q 019380          198 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGY  270 (342)
Q Consensus       198 ~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~  270 (342)
                      .+|+              ++.+|||||+.||+.||.       +..+..+++||+.+++.+++....++|+.|++.| |+
T Consensus        83 ~~fl--------------~~~~lVaHNa~FD~~fL~~~~~~~gl~~~~~~~iDtl~la~~~~~~~~~~kL~~L~~~l-gi  147 (313)
T PRK06807         83 LAFL--------------HTNVIVAHNASFDMRFLKSNVNMLGLPEPKNKVIDTVFLAKKYMKHAPNHKLETLKRML-GI  147 (313)
T ss_pred             HHHH--------------cCCeEEEEcHHHHHHHHHHHHHHcCCCCCCCCEeeHHHHHHHHhCCCCCCCHHHHHHHc-CC
Confidence            9999              778999999999999998       2244577999999999888877889999999988 99


Q ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHhhhh
Q 019380          271 DIQSGVHDPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       271 ~~~~~~H~A~~Da~~t~~l~~~~~~~~~  298 (342)
                      +.  .+|+|++||++|++||.++.....
T Consensus       148 ~~--~~H~Al~DA~~ta~l~~~l~~~~~  173 (313)
T PRK06807        148 RL--SSHNAFDDCITCAAVYQKCASIEE  173 (313)
T ss_pred             CC--CCcChHHHHHHHHHHHHHHHHhhh
Confidence            96  699999999999999999998764

>PRK07748 sporulation inhibitor KapD; Provisional

Probab=99.94  E-value=1.4e-26  Score=202.45  Aligned_cols=159  Identities=18%  Similarity=0.253  Sum_probs=129.9

Q ss_pred             CCcceeccccccccc--------CCCcccccceEEeecCCCCe--EEeeecCCCC--CccccccccCCCCHhhhcCCCCh
Q 019380          123 GPKAVAMDCEMVGGG--------SNGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPL  190 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~--------~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~--~i~~~~~~i~GIt~e~l~~~~~~  190 (342)
                      ...|+++|+||||..        .++++|+ +++.+.  +|++  .|++||+|..  +++++++++||||++||+++|+|
T Consensus         3 ~~~~vvlD~EtTg~~~~~~~~~~~~eIIeI-GaV~v~--~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~l~~ap~~   79 (207)
T PRK07748          3 EQQFLFLDFEFTMPQHKKKPKGFFPEIIEV-GLVSVV--GCEVEDTFSSYVKPKTFPSLTERCKSFLGITQEDVDKGISF   79 (207)
T ss_pred             cceEEEEEeecCCcCCCCCCCCCCCceEEE-eEEEEe--cCcChhhhcceECCCccCccChhhhhhcCcCHHHHccCCCH
Confidence            356999999999853        2467888 888774  3444  5999999986  68999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCccccccCCCCC-eEEEeeCchhhhhhcc-------ccCCC-cceeeccccccccccCCCCccHH
Q 019380          191 KEVKDKILEILNNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLR-------MNYPD-HMLRDTAKYRPLMKTNLVSHSLK  261 (342)
Q Consensus       191 ~~v~~~~~~~l~~~~~~~~~~~~~~~~-~~lvgh~~~~D~~~l~-------~~~~~-~~~~Dt~~l~~~~~~~~~~~~L~  261 (342)
                      .+|+++|.+|+              ++ .++|+||..||+.||+       +..|. ..++|++.+++..++....++|.
T Consensus        80 ~evl~~f~~~~--------------~~~~~~iv~~~~fD~~fL~~~~~~~~~~~~~~~~~~dl~~~~~~~~~~~~~~~L~  145 (207)
T PRK07748         80 EELVEKLAEYD--------------KRCKPTIVTWGNMDMKVLKHNCEKAGVPFPFKGQCRDLSLEYKKFFGERNQTGLW  145 (207)
T ss_pred             HHHHHHHHHHh--------------CcCCeEEEEECHHHHHHHHHHHHHcCCCCcccccceeHHHHHHHHhCcCCCCCHH
Confidence            99999999999              55 3444456799999998       22333 56788888777776666679999


Q ss_pred             HHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          262 YLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       262 ~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      ++++.| |++..+.+|+|++||++|++||.++.++.+.
T Consensus       146 ~~~~~~-gi~~~~~~H~Al~DA~~ta~l~~~l~~~~~~  182 (207)
T PRK07748        146 KAIEEY-GKEGTGKHHCALDDAMTTYNIFKLVEKDKEY  182 (207)
T ss_pred             HHHHHc-CCCCCCCCcChHHHHHHHHHHHHHHHhCcce
Confidence            999998 9985555899999999999999999988643

>PRK06063 DNA polymerase III subunit epsilon; Provisional

Probab=99.93  E-value=6.1e-26  Score=209.41  Aligned_cols=159  Identities=22%  Similarity=0.281  Sum_probs=134.1

Q ss_pred             CCCCcceecccccccccCC--CcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHH
Q 019380          121 CRGPKAVAMDCEMVGGGSN--GTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDK  196 (342)
Q Consensus       121 ~~~~~~v~~D~Ettg~~~~--~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~  196 (342)
                      .....|++||+||||+++.  +++++ +.+.+ +.+|++  .|+++|+|..  ++..+.+||||++||.++|+|.+++++
T Consensus        12 ~~~~~fvvlD~ETTGl~p~~d~IIeI-gav~v-~~~g~i~~~~~~lv~P~~--~~~~~~IhGIt~e~l~~ap~f~ev~~~   87 (313)
T PRK06063         12 HYPRGWAVVDVETSGFRPGQARIISL-AVLGL-DADGNVEQSVVTLLNPGV--DPGPTHVHGLTAEMLEGQPQFADIAGE   87 (313)
T ss_pred             CCCCCEEEEEEECCCCCCCCCEEEEE-EEEEE-ECCceeeeEEEEEECcCC--CCCCeecCCCCHHHHhCCCCHHHHHHH
Confidence            3456899999999998754  67777 55555 345665  4899999975  356789999999999999999999999


Q ss_pred             HHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccc-------cCCCcceeeccccccccccCCCCccHHHHHHHHhC
Q 019380          197 ILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-------NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLG  269 (342)
Q Consensus       197 ~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-------~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~  269 (342)
                      |.+|+              ++.+|||||+.||+.||+.       ..|...++||+.+++.+.+...+++|+.|+++| |
T Consensus        88 l~~~l--------------~~~~lVaHNa~FD~~fL~~~~~r~g~~~~~~~~ldTl~lar~~~~~~~~~kL~~l~~~~-g  152 (313)
T PRK06063         88 VAELL--------------RGRTLVAHNVAFDYSFLAAEAERAGAELPVDQVMCTVELARRLGLGLPNLRLETLAAHW-G  152 (313)
T ss_pred             HHHHc--------------CCCEEEEeCHHHHHHHHHHHHHHcCCCCCCCCEEehHHHHHHhccCCCCCCHHHHHHHc-C
Confidence            99999              8899999999999999982       234456899999999887777899999999988 9


Q ss_pred             CcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          270 YDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       270 ~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      ++ ..++|+|++||++|++||..++++..+
T Consensus       153 i~-~~~~H~Al~DA~ata~l~~~ll~~~~~  181 (313)
T PRK06063        153 VP-QQRPHDALDDARVLAGILRPSLERARE  181 (313)
T ss_pred             CC-CCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence            88 456999999999999999999888654

>PRK06310 DNA polymerase III subunit epsilon; Validated

Probab=99.93  E-value=6.3e-26  Score=203.31  Aligned_cols=159  Identities=17%  Similarity=0.288  Sum_probs=132.2

Q ss_pred             CCcceecccccccccC--CCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 019380          123 GPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  200 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~  200 (342)
                      ..++|+||+||||+++  ++++|+ +.+.+........|+.+|+|..+|+..++.+||||+|+|+++|++.+|+++|.+|
T Consensus         6 ~~~~v~~D~ETTGl~~~~d~IIEI-a~v~v~~~~~~~~~~~li~P~~~I~~~a~~ihgIt~e~v~~~p~~~ev~~~~~~f   84 (250)
T PRK06310          6 DTEFVCLDCETTGLDVKKDRIIEF-AAIRFTFDEVIDSVEFLINPERVVSAESQRIHHISDAMLRDKPKIAEVFPQIKGF   84 (250)
T ss_pred             CCcEEEEEEeCCCCCCCCCeEEEE-EEEEEECCeEEEEEEEEECcCCCCCHhhhhccCcCHHHHhCCCCHHHHHHHHHHH
Confidence            3679999999999864  567777 6666632211225899999999999999999999999999999999999999999


Q ss_pred             HhcCCCccccccCCCCC-eEEEeeCchhhhhhcccc-------CC--CcceeeccccccccccCCCCccHHHHHHHHhCC
Q 019380          201 LNNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLRMN-------YP--DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGY  270 (342)
Q Consensus       201 l~~~~~~~~~~~~~~~~-~~lvgh~~~~D~~~l~~~-------~~--~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~  270 (342)
                      +              ++ .+|||||+.||+.||...       .+  ...++||+.+++.+ +...+++|..|+.+| |+
T Consensus        85 l--------------~~~~~lvghn~~FD~~~L~~~~~r~g~~~~~~~~~~iDtl~lar~~-~~~~~~~L~~l~~~~-g~  148 (250)
T PRK06310         85 F--------------KEGDYIVGHSVGFDLQVLSQESERIGETFLSKHYYIIDTLRLAKEY-GDSPNNSLEALAVHF-NV  148 (250)
T ss_pred             h--------------CCCCEEEEECHHHHHHHHHHHHHHcCCCccccCCcEEehHHHHHhc-ccCCCCCHHHHHHHC-CC
Confidence            9              44 799999999999999822       11  15689999998864 444578999999998 99


Q ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          271 DIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       271 ~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      +. .++|+|++||.+|++||..+.++...
T Consensus       149 ~~-~~aH~Al~Da~at~~vl~~l~~~~~~  176 (250)
T PRK06310        149 PY-DGNHRAMKDVEINIKVFKHLCKRFRT  176 (250)
T ss_pred             CC-CCCcChHHHHHHHHHHHHHHHHhccc
Confidence            84 45999999999999999999877544

>PRK06309 DNA polymerase III subunit epsilon; Validated

Probab=99.93  E-value=1.2e-25  Score=199.69  Aligned_cols=155  Identities=23%  Similarity=0.452  Sum_probs=131.3

Q ss_pred             CcceecccccccccC--CCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHH
Q 019380          124 PKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  201 (342)
Q Consensus       124 ~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l  201 (342)
                      ..+++||+||||++.  ++++++ +   +++......|+.+++|..+|++.++++||||++||+++|+|.+++++|.+|+
T Consensus         2 ~~~vv~D~ETTGl~~~~d~IIei-g---~v~~~~~~~f~~lv~P~~~I~~~a~~IhGIt~e~v~~~p~f~ev~~~~~~fi   77 (232)
T PRK06309          2 PALIFYDTETTGTQIDKDRIIEI-A---AYNGVTSESFQTLVNPEIPIPAEASKIHGITTDEVADAPKFPEAYQKFIEFC   77 (232)
T ss_pred             CcEEEEEeeCCCCCCCCCEEEEE-E---EEcCccccEEEEEeCCCCCCChhHHhhcCCCHHHHhCCCCHHHHHHHHHHHH
Confidence            358999999999864  445555 3   3555455679999999999999999999999999999999999999999999


Q ss_pred             hcCCCccccccCCCCCeEEEeeCc-hhhhhhccc-------cCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCC
Q 019380          202 NNGESTGRLMLDDGKARLLVGHGL-EHDLDSLRM-------NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ  273 (342)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~~-------~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~  273 (342)
                                   +++.+|||||+ .||+.||+.       ..+...++||+.+++.+.+...+++|..|+..| |++. 
T Consensus        78 -------------~~~~~lVaHN~~~FD~~~L~~e~~r~g~~~~~~~~iDt~~l~~~~~~~~~~~~L~~l~~~~-~~~~-  142 (232)
T PRK06309         78 -------------GTDNILVAHNNDAFDFPLLRKECRRHGLEPPTLRTIDSLKWAQKYRPDLPKHNLQYLRQVY-GFEE-  142 (232)
T ss_pred             -------------cCCCEEEEeCCHHHHHHHHHHHHHHcCCCCCCCcEEeHHHHHHHHcCCCCCCCHHHHHHHc-CCCC-
Confidence                         13569999995 899999982       223467899999999888877789999999999 8873 


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhhh
Q 019380          274 SGVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       274 ~~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                      .++|+|++||.+|++||.+++++.
T Consensus       143 ~~aH~Al~Da~~t~~vl~~l~~~~  166 (232)
T PRK06309        143 NQAHRALDDVITLHRVFSALVGDL  166 (232)
T ss_pred             CCCCCcHHHHHHHHHHHHHHHHHH
Confidence            459999999999999999998764

>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family

Probab=99.93  E-value=7.3e-26  Score=199.35  Aligned_cols=161  Identities=18%  Similarity=0.328  Sum_probs=133.8

Q ss_pred             CCcceecccccccccCC-CcccccceEEeecCCCC-eEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 019380          123 GPKAVAMDCEMVGGGSN-GTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  200 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~~-~~~~il~~v~vv~~~~~-~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~  200 (342)
                      ...||++|+||||+++. .++++ +++.+++.... ..|+++|+|..++++.+..+||||++++.++|++.+|+.+|.+|
T Consensus         6 ~~~fvv~D~ETTGl~~~~~IIeI-gav~v~~~~~~~~~f~~li~P~~~i~~~a~~ihGIt~e~l~~~p~~~ev~~~~~~~   84 (217)
T TIGR00573         6 LDTETTGDNETTGLYAGHDIIEI-GAVEIINRRITGNKFHTYIKPDRPIDPDAIKIHGITDDMLKDKPDFKEIAEDFADY   84 (217)
T ss_pred             ecCEEEEEecCCCCCCCCCEEEE-EEEEEECCCEeeeEEEEEECcCCCCCHHHHhhcCCCHHHHcCCCCHHHHHHHHHHH
Confidence            45799999999998743 26777 77776544222 26899999999999999999999999999999999999999999


Q ss_pred             HhcCCCccccccCCCCCeEEEeeCchhhhhhccccC--------CCcceeeccccccccccCC--CCccHHHHHHHHhCC
Q 019380          201 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY--------PDHMLRDTAKYRPLMKTNL--VSHSLKYLTRTYLGY  270 (342)
Q Consensus       201 l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~--------~~~~~~Dt~~l~~~~~~~~--~~~~L~~l~~~~~~~  270 (342)
                      +              ++.++||||+.||+.||+..+        +...++|+..+++.+.+..  .+++|..|+..| |+
T Consensus        85 ~--------------~~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~dtl~l~~~~~~~~~~~~~~L~~l~~~~-gl  149 (217)
T TIGR00573        85 I--------------RGAELVIHNASFDVGFLNYEFSKLYKVEPKTNDVIDTTDTLQYARPEFPGKRNTLDALCKRY-EI  149 (217)
T ss_pred             h--------------CCCEEEEeccHHHHHHHHHHHHHhcCCCCCccceecHHHHHHHHHHhCCCCCCCHHHHHHHc-CC
Confidence            9              778999999999999998221        2256889988877766532  468999999998 88


Q ss_pred             cCCC-CCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          271 DIQS-GVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       271 ~~~~-~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      +... ++|+|++||++|++||.++..+..+
T Consensus       150 ~~~~~~~H~Al~DA~~ta~l~~~l~~~~~~  179 (217)
T TIGR00573       150 TNSHRALHGALADAFILAKLYLVMTGKQTK  179 (217)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHHHhcchh
Confidence            8432 5899999999999999999998765

All proteins in this family for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the n-terminal region of DinG from some low GC gram positive bacteria. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins

Probab=99.93  E-value=1.2e-25  Score=190.34  Aligned_cols=151  Identities=21%  Similarity=0.336  Sum_probs=125.9

Q ss_pred             ceecccccccccC---CCcccccceEEeecCCCC-eEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHH
Q 019380          126 AVAMDCEMVGGGS---NGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  201 (342)
Q Consensus       126 ~v~~D~Ettg~~~---~~~~~il~~v~vv~~~~~-~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l  201 (342)
                      +|++|+||||+++   +.++++ +.+.+.+.... ..|+.+++|..++++.++++||||+++++++|++.+++++|.+|+
T Consensus         1 ~v~~D~ETTGl~~~~~~~iiei-g~v~v~~~~~~~~~~~~~v~P~~~i~~~~~~ihGIt~e~l~~~~~~~~v~~~l~~~l   79 (167)
T cd06131           1 QIVLDTETTGLDPREGHRIIEI-GCVELINRRLTGNTFHVYINPERDIPEEAFKVHGITDEFLADKPKFAEIADEFLDFI   79 (167)
T ss_pred             CEEEEeeCCCCCCCCCCeEEEE-EEEEEECCcEeccEEEEEECCCCCCCHHHHHHhCCCHHHHhcCCCHHHHHHHHHHHH
Confidence            5789999999875   467777 77766432111 258999999999999999999999999999999999999999999


Q ss_pred             hcCCCccccccCCCCCeEEEeeCchhhhhhcccc-------C---CCcceeeccccccccccCCCCccHHHHHHHHhCCc
Q 019380          202 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------Y---PDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-------~---~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  271 (342)
                                    ++.++||||+.||+.||+..       .   ....++||+.+++..++. ..++|++|+++| |++
T Consensus        80 --------------~~~~lv~hn~~fD~~~l~~~~~~~~~~~~~~~~~~~idt~~~~~~~~~~-~~~~L~~l~~~~-~i~  143 (167)
T cd06131          80 --------------RGAELVIHNASFDVGFLNAELSLLGLGKKIIDFCRVIDTLALARKKFPG-KPNSLDALCKRF-GID  143 (167)
T ss_pred             --------------CCCeEEEeChHHhHHHHHHHHHHhCCCcccccCCCceEhHHHHHHHcCC-CCCCHHHHHHHC-CCC
Confidence                          77899999999999999721       1   125689999998877654 467999999999 988


Q ss_pred             CCC-CCCCcHHHHHHHHHHHHHH
Q 019380          272 IQS-GVHDPYEDCVSVMRLYKRF  293 (342)
Q Consensus       272 ~~~-~~H~A~~Da~~t~~l~~~~  293 (342)
                      ... ++|+|++||++|++||.++
T Consensus       144 ~~~~~~H~Al~Da~~~a~l~~~l  166 (167)
T cd06131         144 NSHRTLHGALLDAELLAEVYLEL  166 (167)
T ss_pred             CCCCCCCChHHHHHHHHHHHHHh
Confidence            643 4899999999999999875

This subfamily is composed of the epsilon subunit of Escherichia coli DNA polymerase III (Pol III) and similar proteins. Pol III is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. It is a holoenzyme complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon

>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated

Probab=99.92  E-value=1.8e-25  Score=229.99  Aligned_cols=160  Identities=20%  Similarity=0.335  Sum_probs=138.9

Q ss_pred             CCCCcceeccccccccc-CCCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHH
Q 019380          121 CRGPKAVAMDCEMVGGG-SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  197 (342)
Q Consensus       121 ~~~~~~v~~D~Ettg~~-~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~  197 (342)
                      .....++++|+||||.+ .++++++ +++.+.  +|++  .|+++|+|..+|++.++.+||||++||.++|+|++|+++|
T Consensus         4 ~~~~~~vvvD~ETTGl~~~d~IIeI-gaV~v~--~g~i~~~f~~lv~P~~~i~~~~~~ltGIt~e~l~~ap~~~ev~~~~   80 (820)
T PRK07246          4 KKLRKYAVVDLEATGAGPNASIIQV-GIVIIE--GGEIIDSYTTDVNPHEPLDEHIKHLTGITDQQLAQAPDFSQVARHI   80 (820)
T ss_pred             ccCCCEEEEEEecCCcCCCCeEEEE-EEEEEE--CCEEEEEEEEEeCcCCCCCHhHhhcCCCCHHHHhcCCCHHHHHHHH
Confidence            34567999999999986 4567777 777663  4555  5899999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccc-----cCC-CcceeeccccccccccCCCCccHHHHHHHHhCCc
Q 019380          198 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-----NYP-DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       198 ~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-----~~~-~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  271 (342)
                      .+|+              ++.++||||+.||+.||+.     .++ ..+.+||..+++.++|...+++|.+||..| |++
T Consensus        81 ~~~l--------------~~~~lVaHN~~FD~~fL~~~~~~~g~~~~~~~iDT~~la~~~~p~~~~~~L~~L~~~l-gl~  145 (820)
T PRK07246         81 YDLI--------------EDCIFVAHNVKFDANLLAEALFLEGYELRTPRVDTVELAQVFFPTLEKYSLSHLSREL-NID  145 (820)
T ss_pred             HHHh--------------CCCEEEEECcHHHHHHHHHHHHHcCCCCCCCceeHHHHHHHHhCCCCCCCHHHHHHHc-CCC
Confidence            9999              8899999999999999973     122 256899999999999988899999999988 998


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          272 IQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       272 ~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      . ..+|+|++||++|++||.+++++...
T Consensus       146 ~-~~~H~Al~DA~ata~L~~~l~~~l~~  172 (820)
T PRK07246        146 L-ADAHTAIADARATAELFLKLLQKIES  172 (820)
T ss_pred             C-CCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence            5 46899999999999999999988644

>PRK09145 DNA polymerase III subunit epsilon; Validated

Probab=99.92  E-value=4.3e-25  Score=192.53  Aligned_cols=156  Identities=19%  Similarity=0.313  Sum_probs=126.9

Q ss_pred             CCCcceecccccccccC--CCcccccceEEeecCCCCe----EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHH
Q 019380          122 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV----IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD  195 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~----~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~  195 (342)
                      ....+|++|+||||+++  +.++++ +.+.+.+  +.+    .|+.+|+|..++++.++++||||+++++++|++.+|++
T Consensus        27 ~~~~~vviD~ETTGl~~~~d~IieI-gaV~~~~--~~~~~~~~f~~~i~p~~~i~~~~~~ihGIt~~~l~~~~~~~~vl~  103 (202)
T PRK09145         27 PPDEWVALDCETTGLDPRRAEIVSI-AAVKIRG--NRILTSERLELLVRPPQSLSAESIKIHRLRHQDLEDGLSEEEALR  103 (202)
T ss_pred             CCCCEEEEEeECCCCCCCCCceEEE-EEEEEEC--CEEeecCceEEEECCCCCCCHhHhhhcCcCHHHHhcCCCHHHHHH
Confidence            34589999999999874  567777 6666632  332    48899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc------CC-Ccceeeccccccc----ccc-CCCCccHHHH
Q 019380          196 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN------YP-DHMLRDTAKYRPL----MKT-NLVSHSLKYL  263 (342)
Q Consensus       196 ~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~------~~-~~~~~Dt~~l~~~----~~~-~~~~~~L~~l  263 (342)
                      +|.+|+              ++.+|||||+.||+.||...      .+ ...++|+..++..    ..+ ...+++|++|
T Consensus       104 ~~~~~i--------------~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~id~~~l~~~~~~~~~~~~~~~~~L~~l  169 (202)
T PRK09145        104 QLLAFI--------------GNRPLVGYYLEFDVAMLNRYVRPLLGIPLPNPLIEVSALYYDKKERHLPDAYIDLRFDAI  169 (202)
T ss_pred             HHHHHH--------------cCCeEEEeCHHHHHHHHHHHHHHhcCCCCCCCeeeHHHHHHHHhhccCCCcccCCCHHHH
Confidence            999999              78899999999999999822      22 2557898765421    122 2346899999


Q ss_pred             HHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhh
Q 019380          264 TRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ  296 (342)
Q Consensus       264 ~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~  296 (342)
                      ++.| |++. .++|+|++||++|++||.++++.
T Consensus       170 ~~~~-gi~~-~~~H~Al~DA~ata~l~~~l~~~  200 (202)
T PRK09145        170 LKHL-DLPV-LGRHDALNDAIMAALIFLRLRKG  200 (202)
T ss_pred             HHHc-CCCC-CCCCCcHHHHHHHHHHHHHHHhc
Confidence            9998 9985 46899999999999999998764

>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]

Probab=99.92  E-value=4.4e-26  Score=228.93  Aligned_cols=158  Identities=23%  Similarity=0.388  Sum_probs=143.7

Q ss_pred             CCcceeccccccccc--CCCcccccceEEeecCCCCeE--EeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHH
Q 019380          123 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  198 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~~--~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~  198 (342)
                      ...||+||.||||++  .+.++++ +++.+  .+|+++  |+.|++|..+++...+.+||||++||++++++.+|+.+|.
T Consensus       420 datyVVfDiETTGLs~~~d~iIE~-aAvKi--kng~iId~f~~Fi~P~~pl~~~~telTgITdeml~~a~~i~~vL~kf~  496 (1444)
T COG2176         420 DATYVVFDIETTGLSPVYDEIIEI-AAVKI--KNGRIIDKFQFFIKPGRPLSATITELTGITDEMLENAPEIEEVLEKFR  496 (1444)
T ss_pred             cccEEEEEeecCCcCcccchhhhh-eeeee--eCCcchHHHHHhcCCCCcCchhhhhccccCHHHHcCCccHHHHHHHHH
Confidence            345999999999987  6778888 88888  677774  9999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc-----CC--CcceeeccccccccccCCCCccHHHHHHHHhCCc
Q 019380          199 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-----YP--DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       199 ~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-----~~--~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  271 (342)
                      +|+              +++|||+||+.||++||+..     .+  .+++|||+.|++.++|...+++|..||+.| |+.
T Consensus       497 ~~~--------------~d~IlVAHNasFD~gFl~~~~~k~~~~~~~~pvIDTL~lar~L~P~~ksh~Lg~l~kk~-~v~  561 (1444)
T COG2176         497 EFI--------------GDSILVAHNASFDMGFLNTNYEKYGLEPLTNPVIDTLELARALNPEFKSHRLGTLCKKL-GVE  561 (1444)
T ss_pred             HHh--------------cCcEEEeccCccchhHHHHHHHHhCCccccCchhhHHHHHHHhChhhhhcchHHHHHHh-Ccc
Confidence            999              99999999999999999922     22  288999999999999999999999999999 999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          272 IQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       272 ~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      + ..+|||.+||.+|+.||..+++...+
T Consensus       562 l-e~hHRA~yDaeat~~vf~~f~~~~ke  588 (1444)
T COG2176         562 L-ERHHRADYDAEATAKVFFVFLKDLKE  588 (1444)
T ss_pred             H-HHhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            7 55999999999999999999988765

>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T

Probab=99.92  E-value=3.2e-25  Score=191.02  Aligned_cols=163  Identities=21%  Similarity=0.255  Sum_probs=126.8

Q ss_pred             cceeccccccccc--CCCcccccceEEeecC-CCCe----EEeeecCC--CCCccccccccCCCCHhh-hcCCCChHHHH
Q 019380          125 KAVAMDCEMVGGG--SNGTLDLCARVCLVDE-DENV----IFHTYVQP--QLPVTNYRYEVTGLTEED-IKNAMPLKEVK  194 (342)
Q Consensus       125 ~~v~~D~Ettg~~--~~~~~~il~~v~vv~~-~~~~----~~~~lv~p--~~~i~~~~~~i~GIt~e~-l~~~~~~~~v~  194 (342)
                      ..|++|+||||++  .+.++++ +++.+.+. +|.+    .|+++|+|  ..+|++.+.++||||+++ +.++++..+++
T Consensus         6 ~~vv~D~ETTGl~~~~d~Iiei-gav~v~~~~~~~i~~~~~f~~lv~P~~~~~i~~~~~~ihGIt~~~~~~~~~~~~~~~   84 (189)
T cd06134           6 LPVVVDVETGGFNPQTDALLEI-AAVTLEMDEQGNLYPDETFHFHILPFEGANLDPAALEFNGIDPFHPFRFAVDEKEAL   84 (189)
T ss_pred             eeEEEEecCCCCCCCCCeEEEE-EEEEEEECCCCceeccceEEEEEcCCCCCCCCHHHHhhcCCCchhhhccccchHHHH
Confidence            4689999999987  4567888 88888643 4543    69999999  578999999999999987 67777777777


Q ss_pred             HHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc-----C---C--CcceeeccccccccccCCCCccHHHHH
Q 019380          195 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-----Y---P--DHMLRDTAKYRPLMKTNLVSHSLKYLT  264 (342)
Q Consensus       195 ~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-----~---~--~~~~~Dt~~l~~~~~~~~~~~~L~~l~  264 (342)
                      .+|.+++.+.-     ...+.++.+|||||+.||+.||+..     .   +  ...++||..+++.+++   +++|..+|
T Consensus        85 ~~~~~~l~~~~-----~~~~~~~~~lVaHna~FD~~fL~~~~~~~~~~~~~~~~~~~lDt~~la~~~~~---~~~L~~l~  156 (189)
T cd06134          85 KEIFKPIRKAL-----KAQGCTRAILVGHNAHFDLGFLNAAVARCKIKRNPFHPFSTFDTATLAGLAYG---QTVLAKAC  156 (189)
T ss_pred             HHHHHHHHHHH-----hhcccCCCeEEEecchhhHHHHHHHHHHhCCCCCCCCCCcEEEHHHHHHHHhC---CCcHHHHH
Confidence            77777662110     0001136799999999999999821     1   2  2457999999998765   36899999


Q ss_pred             HHHhCCcCC-CCCCCcHHHHHHHHHHHHHHHhhh
Q 019380          265 RTYLGYDIQ-SGVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       265 ~~~~~~~~~-~~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                      ++| |+++. ..+|+|++||++|++||.+++++|
T Consensus       157 ~~~-gi~~~~~~~H~Al~DA~ata~lf~~l~~~~  189 (189)
T cd06134         157 QAA-GIEFDNKEAHSALYDTQKTAELFCKIVNRW  189 (189)
T ss_pred             HHC-CCCCCCCCCcChHHHHHHHHHHHHHHHHhC
Confidence            998 99864 358999999999999999999876

RNase T is a DEDDh-type DnaQ-like 3'-5' exoribonuclease E implicated in the 3' maturation of small stable RNAs and 23srRNA, and in the end turnover of tRNA. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase T is related to the proofreading domain of DNA polymerase III. Despite its important role, RNase T is mainly found only in gammaproteobacteria. It is speculated that it might have originated from DNA polymerase III at the time the gamma division of proteobacteria diverged from other bacteria. RNase T is a homodimer with the catalytic residues of one monomer contacting a large basic patch on the other monomer to form a functional active site.

>PRK06722 exonuclease; Provisional

Probab=99.92  E-value=2.5e-25  Score=200.40  Aligned_cols=158  Identities=15%  Similarity=0.160  Sum_probs=127.9

Q ss_pred             CCcceeccccccccc-----CCCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHH
Q 019380          123 GPKAVAMDCEMVGGG-----SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD  195 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~-----~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~  195 (342)
                      ...++++|+||||..     .++++++ +++.+.+..+++  .|++||+|..+++++++.+||||++||++||++.+|++
T Consensus         4 ~~~~vViD~ETT~~p~~~~~~deIIEI-GAVkV~~g~i~Ivd~F~sLV~P~~~I~~~i~~LTGIT~emV~~AP~f~eVl~   82 (281)
T PRK06722          4 ATHFIVFDIERNFRPYKSEDPSEIVDI-GAVKIEASTMKVIGEFSELVKPGARLTRHTTKLTGITKKDLIGVEKFPQIIE   82 (281)
T ss_pred             CCEEEEEEeeCCCCCCCCCCCCeEEEE-EEEEEECCceeEEeeEEEEECCCCcCCHhHhhhcCCCHHHHcCCCCHHHHHH
Confidence            467999999999632     2678888 888885544455  49999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc-------CCC---cceeeccccccccccC--CCCccHHHH
Q 019380          196 KILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YPD---HMLRDTAKYRPLMKTN--LVSHSLKYL  263 (342)
Q Consensus       196 ~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-------~~~---~~~~Dt~~l~~~~~~~--~~~~~L~~l  263 (342)
                      +|.+|+              ++.++|+||..||++||...       .|.   ...+|++.++...++.  ...++|..|
T Consensus        83 ef~~fi--------------g~~~lvahna~FD~~FL~~~l~~~gi~~p~~~~~~~idl~~la~~~~~~l~~~~~sL~~l  148 (281)
T PRK06722         83 KFIQFI--------------GEDSIFVTWGKEDYRFLSHDCTLHSVECPCMEKERRIDLQKFVFQAYEELFEHTPSLQSA  148 (281)
T ss_pred             HHHHHH--------------CCCcEEEEEeHHHHHHHHHHHHHcCCCCCcccccchhHHHHHHHHHhhhhccCCCCHHHH
Confidence            999999              66677888889999999932       222   2246777655433332  235789999


Q ss_pred             HHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhh
Q 019380          264 TRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ  296 (342)
Q Consensus       264 ~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~  296 (342)
                      ++.| |++..+.+|+|++||.+|+.||.+++++
T Consensus       149 ~~~l-gL~~~g~~HrAL~DA~~TA~L~l~l~~~  180 (281)
T PRK06722        149 VEQL-GLIWEGKQHRALADAENTANILLKAYSE  180 (281)
T ss_pred             HHHC-CCCCCCCCcCcHHHHHHHHHHHHHHhcc
Confidence            9998 9996666999999999999999999854

>PRK07883 hypothetical protein; Validated

Probab=99.92  E-value=5.1e-25  Score=217.69  Aligned_cols=159  Identities=23%  Similarity=0.343  Sum_probs=138.0

Q ss_pred             CCCcceecccccccccC--CCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHH
Q 019380          122 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  197 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~  197 (342)
                      ....+|+||+||||+++  +.++++ +++.+.  +|.+  .|+.+|+|..+++++++.+||||++++.++|++.+++++|
T Consensus        13 ~~~~~Vv~D~ETTGl~p~~~~IIEI-gaV~v~--~g~iv~~f~~lV~P~~~i~~~~~~itGIt~e~l~~ap~~~evl~~f   89 (557)
T PRK07883         13 RDVTFVVVDLETTGGSPAGDAITEI-GAVKVR--GGEVLGEFATLVNPGRPIPPFITVLTGITTAMVAGAPPIEEVLPAF   89 (557)
T ss_pred             cCCCEEEEEEecCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEECCCCCCChhHHhhcCCCHHHHhCCCCHHHHHHHH
Confidence            44689999999999875  567777 777773  4555  4899999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc-------ccCCCcceeecccccccccc--CCCCccHHHHHHHHh
Q 019380          198 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKT--NLVSHSLKYLTRTYL  268 (342)
Q Consensus       198 ~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~--~~~~~~L~~l~~~~~  268 (342)
                      .+|+              ++.++||||+.||+.||+       +..+...++||+.+++.+.+  ...+++|.+|+.+| 
T Consensus        90 ~~fl--------------~~~~lVaHNa~FD~~fL~~~~~r~g~~~~~~~~iDTl~lar~l~~~~~~~~~~L~~L~~~~-  154 (557)
T PRK07883         90 LEFA--------------RGAVLVAHNAPFDIGFLRAAAARCGYPWPGPPVLCTVRLARRVLPRDEAPNVRLSTLARLF-  154 (557)
T ss_pred             HHHh--------------cCCEEEEeCcHHHHHHHHHHHHHcCCCCCCCCcEecHHHHHHhcccCCCCCCCHHHHHHHC-
Confidence            9999              778999999999999998       23444678999999988776  56789999999987 


Q ss_pred             CCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          269 GYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       269 ~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      |++. .++|+|++||++|++||.++..+...
T Consensus       155 gi~~-~~~H~Al~DA~ata~l~~~l~~~~~~  184 (557)
T PRK07883        155 GATT-TPTHRALDDARATVDVLHGLIERLGN  184 (557)
T ss_pred             Cccc-CCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence            9985 45899999999999999999988754

>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases

Probab=99.92  E-value=5.9e-25  Score=186.06  Aligned_cols=155  Identities=29%  Similarity=0.487  Sum_probs=129.0

Q ss_pred             ceecccccccccCC--CcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhc
Q 019380          126 AVAMDCEMVGGGSN--GTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  203 (342)
Q Consensus       126 ~v~~D~Ettg~~~~--~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~~  203 (342)
                      ++++|+||||.++.  +++++ +.+.+.+..-...|+.+|+|..+++++++++||||++++.+++++.+|+.+|.+|+  
T Consensus         2 ~v~~D~Ettg~~~~~~~Iiei-g~v~~~~~~~~~~f~~~v~p~~~i~~~~~~~~Git~~~l~~~~~~~~~~~~~~~~l--   78 (169)
T smart00479        2 LVVIDCETTGLDPGKDEIIEI-AAVDVDGGRIIVVFDTYVKPDRPITDYATEIHGITPEMLDDAPTFEEVLEELLEFL--   78 (169)
T ss_pred             EEEEEeeCCCCCCCCCeEEEE-EEEEEECCEeEEEEEEEECCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHHHHHHHh--
Confidence            78999999998743  56666 65555322213369999999999999999999999999999999999999999999  


Q ss_pred             CCCccccccCCCCCeEEEeeCc-hhhhhhcccc-------CCC-cceeeccccccccccCCCCccHHHHHHHHhCCcCCC
Q 019380          204 GESTGRLMLDDGKARLLVGHGL-EHDLDSLRMN-------YPD-HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS  274 (342)
Q Consensus       204 ~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~~~-------~~~-~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~  274 (342)
                                  ++.++|+||. .||+.+|+..       .|. ..++|+..+++...+.. .++|++|++.| |++..+
T Consensus        79 ------------~~~~~v~~n~~~fD~~~L~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~-~~~L~~l~~~~-~~~~~~  144 (169)
T smart00479       79 ------------KGKILVAGNALNFDLRFLKLEHPRLGIKDPPKNPVIDTLKLARALNPGR-KYSLKKLAERL-GLEVIG  144 (169)
T ss_pred             ------------cCCEEEEeCCHHHhHHHHHHHHHHhCCCCCcCCCeeEHHHHHHHHCCCC-CCCHHHHHHHC-CCCCCC
Confidence                        6778888888 9999999922       222 45899999998877654 89999999999 888554


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhhh
Q 019380          275 GVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       275 ~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                      .+|+|++||++|++||.++++++
T Consensus       145 ~~H~A~~Da~~t~~l~~~~~~~~  167 (169)
T smart00479      145 RAHRALDDARATAKLFKKLVERL  167 (169)
T ss_pred             CCcCcHHHHHHHHHHHHHHHHHh
Confidence            45999999999999999998876

>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated

Probab=99.92  E-value=7.5e-25  Score=228.94  Aligned_cols=158  Identities=24%  Similarity=0.411  Sum_probs=138.7

Q ss_pred             CCcceecccccccccC---CCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHH
Q 019380          123 GPKAVAMDCEMVGGGS---NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  197 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~---~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~  197 (342)
                      ...+|++|+||||.++   ++++++ +.+.+  .+|++  .|+.+|+|..+|+++++.+||||++||+++|+|.+|+++|
T Consensus         2 ~~~~vvvD~ETTG~~p~~~d~IIei-gav~v--~~~~i~~~f~~~v~P~~~i~~~~~~ltGIt~~~l~~ap~f~ev~~~l   78 (928)
T PRK08074          2 SKRFVVVDLETTGNSPKKGDKIIQI-AAVVV--EDGEILERFSSFVNPERPIPPFITELTGISEEMVKQAPLFEDVAPEI   78 (928)
T ss_pred             CCCEEEEEEeCCCCCCCCCCcEEEE-EEEEE--ECCEEEEEEEEEECcCCCCCHHHhhcCCCCHHHHhcCCCHHHHHHHH
Confidence            3569999999999763   467777 77777  35555  5999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccc-----cC--CCcceeeccccccccccCCCCccHHHHHHHHhCC
Q 019380          198 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-----NY--PDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGY  270 (342)
Q Consensus       198 ~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-----~~--~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~  270 (342)
                      .+|+              ++.++||||+.||+.||+.     .+  +..+++||+.+++..+|...+++|.+|+++| |+
T Consensus        79 ~~~l--------------~~~~~VaHN~~FD~~fL~~~~~~~g~~~~~~~~iDt~~la~~~~p~~~~~~L~~l~~~l-~i  143 (928)
T PRK08074         79 VELL--------------EGAYFVAHNVHFDLNFLNEELERAGYTEIHCPKLDTVELARILLPTAESYKLRDLSEEL-GL  143 (928)
T ss_pred             HHHh--------------CCCeEEEEChHHHHHHHHHHHHHcCCCCCCCCeeeHHHHHHHhcCCCCCCCHHHHHHhC-CC
Confidence            9999              8899999999999999982     12  2367899999999999988899999999998 88


Q ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          271 DIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       271 ~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      + ..++|+|++||++|++||.+++++...
T Consensus       144 ~-~~~~H~Al~DA~ata~l~~~l~~~~~~  171 (928)
T PRK08074        144 E-HDQPHRADSDAEVTAELFLQLLNKLER  171 (928)
T ss_pred             C-CCCCCChHHHHHHHHHHHHHHHHHHHh
Confidence            8 446999999999999999999998754

>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative

Probab=99.92  E-value=5.4e-25  Score=228.91  Aligned_cols=156  Identities=22%  Similarity=0.336  Sum_probs=137.3

Q ss_pred             cceeccccccccc--CCCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 019380          125 KAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  200 (342)
Q Consensus       125 ~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~  200 (342)
                      .||++|+||||.+  .++++++ +.+.+  .+|++  .|+++|+|..+|++.++++||||++|+.++|+|.+++.+|.+|
T Consensus         1 ~~vvvD~ETTG~~~~~~~IIei-g~v~v--~~~~i~~~f~~~v~P~~~i~~~~~~ltGIt~e~l~~ap~~~ev~~~l~~~   77 (850)
T TIGR01407         1 RYAVVDLETTGTQLSFDKIIQI-GIVVV--EDGEIVDTFHTDVNPNEPIPPFIQELTGISDNMLQQAPYFSQVAQEIYDL   77 (850)
T ss_pred             CEEEEEEECCCCCCCCCeEEEE-EEEEE--ECCEEEEEEEEEeCCCCCCChhhhhhcCcCHHHHhCCCCHHHHHHHHHHH
Confidence            3899999999986  4677777 77766  34555  4999999999999999999999999999999999999999999


Q ss_pred             HhcCCCccccccCCCCCeEEEeeCchhhhhhcccc-----C--CCcceeeccccccccccCCCCccHHHHHHHHhCCcCC
Q 019380          201 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-----Y--PDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ  273 (342)
Q Consensus       201 l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-----~--~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~  273 (342)
                      +              ++.++||||+.||+.||+..     .  ....++||+.+++.++|...+++|.+|++.| |++. 
T Consensus        78 l--------------~~~~~VahN~~fD~~fL~~~~~~~g~~~~~~~~iDt~~l~~~~~p~~~~~~L~~l~~~~-gi~~-  141 (850)
T TIGR01407        78 L--------------EDGIFVAHNVHFDLNFLAKALKDCGYEPLPKPRIDTVELAQIFFPTEESYQLSELSEAL-GLTH-  141 (850)
T ss_pred             h--------------CCCEEEEeCcHHHHHHHHHHHHHcCCCCCCCCeEeHHHHHHHhcCCCCCCCHHHHHHHC-CCCC-
Confidence            9              78899999999999999821     2  2367899999999998888899999999998 9985 


Q ss_pred             CCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          274 SGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       274 ~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      .++|+|++||.+|++||.++.++...
T Consensus       142 ~~~H~Al~DA~ata~l~~~l~~~~~~  167 (850)
T TIGR01407       142 ENPHRADSDAQATAELLLLLFEKMEK  167 (850)
T ss_pred             CCCCChHHHHHHHHHHHHHHHHHHHh
Confidence            46999999999999999999988755

This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.

>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins

Probab=99.91  E-value=1e-24  Score=186.07  Aligned_cols=150  Identities=21%  Similarity=0.262  Sum_probs=118.4

Q ss_pred             ceeccccccccc---CCCcccccceEEeecCC---CC--------e--EEeeecCCCCCccccccccCCCCHhhhcCCCC
Q 019380          126 AVAMDCEMVGGG---SNGTLDLCARVCLVDED---EN--------V--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMP  189 (342)
Q Consensus       126 ~v~~D~Ettg~~---~~~~~~il~~v~vv~~~---~~--------~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~  189 (342)
                      |++||+||||++   .++++++ +++.+.+..   +.        +  .|+++|+|..+|++.++.+||||++++.++|+
T Consensus         1 ~vv~D~ETTGl~~~~~d~Iiei-~av~v~~~~~~~~~~~~~~~~~~~~~~~~lv~P~~~I~~~a~~IhGIt~e~l~~~~~   79 (177)
T cd06136           1 FVFLDLETTGLPKHNRPEITEL-CLVAVHRDHLLNTSRDKPALPRVLDKLSLCFNPGRAISPGASEITGLSNDLLEHKAP   79 (177)
T ss_pred             CeEEeeecCCCCCCCCCceEEE-EEEEEecccccccccccccccceeeeeeEEeCCCCcCChhHHHHhCcCHHHHhcCCC
Confidence            689999999996   3577788 888774321   11        2  48999999999999999999999999999998


Q ss_pred             hHH-HHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhccc-------cCC-CcceeeccccccccccCCCCcc
Q 019380          190 LKE-VKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLRM-------NYP-DHMLRDTAKYRPLMKTNLVSHS  259 (342)
Q Consensus       190 ~~~-v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~~-------~~~-~~~~~Dt~~l~~~~~~~~~~~~  259 (342)
                      +.+ +.+.+.+|+...          +++.+|||||+ .||+.||+.       ..+ ...++||+.+++.+.+     +
T Consensus        80 ~~~~~~~~l~~f~~~~----------~~~~~lVaHNa~~FD~~fL~~~~~r~~~~~~~~~~~iDtl~l~r~~~~-----~  144 (177)
T cd06136          80 FDSDTANLIKLFLRRQ----------PKPICLVAHNGNRFDFPILRSELERLGTKLPDDILCVDSLPAFRELDQ-----S  144 (177)
T ss_pred             ccHHHHHHHHHHHHhc----------CCCCEEEEcCCcccCHHHHHHHHHHcCCCCCCCCEEEEeHHHHhhhHh-----h
Confidence            874 666677776211          13469999998 899999972       222 2456899999988764     8


Q ss_pred             HHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHH
Q 019380          260 LKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKR  292 (342)
Q Consensus       260 L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~  292 (342)
                      |+.|+.+++|++ ..++|+|++||.+|+++|.+
T Consensus       145 L~~l~~~~~~~~-~~~~H~A~~Da~at~~v~~~  176 (177)
T cd06136         145 LGSLYKRLFGQE-PKNSHTAEGDVLALLKCALH  176 (177)
T ss_pred             HHHHHHHHhCCC-cccccchHHHHHHHHHHHhh
Confidence            999999755888 45699999999999999875

Three prime repair exonuclease (TREX)1 and TREX2 are closely related DEDDh-type DnaQ-like 3'-5' exonucleases. They contain three conserved sequence motifs known as ExoI, II, and III, with a specific Hx(4)D conserved pattern at ExoIII. These motifs contain four conserved acidic residues that participate in coordination of divalent metal ions required for catalysis. Both proteins play a role in the metabolism and clearance of DNA. TREX1 is the major 3'-5' exonuclease activity detected in mammalian cells. Mutations in the human TREX1 gene can cause Aicardi-Goutieres syndrome (AGS), which is characterized by perturbed innate immunity and presents itself as a severe neurological disease. TREX1 degrades ssDNA generated by aberrant replication intermediates to prevent checkpoint activation and autoimmune disease. There are distinct structural differences between TREX1 and TRE

>TIGR01298 RNaseT ribonuclease T

Probab=99.91  E-value=1e-24  Score=189.36  Aligned_cols=167  Identities=21%  Similarity=0.277  Sum_probs=130.6

Q ss_pred             CCcceecccccccccC--CCcccccceEEeecC-CCCe----EEeeecCC--CCCccccccccCCCCHh-hhcCCCChHH
Q 019380          123 GPKAVAMDCEMVGGGS--NGTLDLCARVCLVDE-DENV----IFHTYVQP--QLPVTNYRYEVTGLTEE-DIKNAMPLKE  192 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~-~~~~----~~~~lv~p--~~~i~~~~~~i~GIt~e-~l~~~~~~~~  192 (342)
                      ..-++++|+||||+++  ++++|+ +++.+... +|.+    .|+++++|  ..+|+..+.++||||++ ++.+++++++
T Consensus         7 ~~~~vv~D~ETTGl~~~~d~IieI-gav~v~~~~~g~i~~~~~f~~~v~p~p~~~i~~~a~~ihGIt~~~~~~~~~~~~~   85 (200)
T TIGR01298         7 GYLPVVVDVETGGFNAKTDALLEI-AAITLKMDEQGWLFPDTTLHFHVEPFEGANIQPEALEFTGIDLDHPLRGAVSEYE   85 (200)
T ss_pred             CCeeEEEEeeCCCCCCCCCeEEEE-EEEEEEEcCCCcEeecceeEEEEcCCCCCCCCHHHHHccCCChhhhhhcCcchHH
Confidence            4457899999999874  567777 88877533 4554    38899997  47899999999999976 6899999999


Q ss_pred             HHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc-----C---C--CcceeeccccccccccCCCCccHHH
Q 019380          193 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-----Y---P--DHMLRDTAKYRPLMKTNLVSHSLKY  262 (342)
Q Consensus       193 v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-----~---~--~~~~~Dt~~l~~~~~~~~~~~~L~~  262 (342)
                      ++.++.+++...-.     ....++.+|||||+.||+.||+..     .   +  ...++||..+++..++   .++|..
T Consensus        86 ~~~~~~~~l~~~~~-----~~~~~~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~~lDTl~lar~~~~---~~~L~~  157 (200)
T TIGR01298        86 ALHEIFKVVRKAMK-----ASGCQRAILVGHNANFDLGFLNAAVERTSLKRNPFHPFSTFDTATLAGLAYG---QTVLAK  157 (200)
T ss_pred             HHHHHHHHHHHHHH-----hcccCCCEEEEECchhhHHHHHHHHHHhCCCCCCCCCCcEEEHHHHHHHHcC---cccHHH
Confidence            98888888721100     000146799999999999999822     1   1  2458999999988765   368999


Q ss_pred             HHHHHhCCcCC-CCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          263 LTRTYLGYDIQ-SGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       263 l~~~~~~~~~~-~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      ||++| |+++. ..+|+|++||.+|++||..+.++..+
T Consensus       158 l~~~~-gi~~~~~~~H~Al~Da~ata~lf~~l~~~~~~  194 (200)
T TIGR01298       158 ACQAA-GXDFDSTQAHSALYDTEKTAELFCEIVNRWKR  194 (200)
T ss_pred             HHHHc-CCCccccchhhhHHhHHHHHHHHHHHHHHHHH
Confidence            99998 98864 35899999999999999999999765

in gamma-subdivision Proteobacteria such as Escherichia coli and Xylella fastidiosa. Ribonuclease T is homologous to the DNA polymerase III alpha chain. It can liberate AMP from the common C-C-A terminus of uncharged tRNA. It appears also to be involved in RNA maturation. It also acts as a 3' to 5' single-strand DNA-specific exonuclease; it is distinctive for its ability to remove residues near a double-stranded stem. Ribonuclease T is a high copy suppressor in E. coli of a uv-repair defect caused by deletion of three other single-stranded DNA exonucleases.

>KOG2248 consensus 3'-5' exonuclease [Replication, recombination and repair]

Probab=99.91  E-value=1.8e-24  Score=201.08  Aligned_cols=160  Identities=41%  Similarity=0.675  Sum_probs=144.1

Q ss_pred             CCCCcceecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCC-CChHHHHHHHHH
Q 019380          121 CRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNA-MPLKEVKDKILE  199 (342)
Q Consensus       121 ~~~~~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~-~~~~~v~~~~~~  199 (342)
                      ....+++++||||+.+ ..+ .++ +++.+||.+++++|+.+|+|..+|.+|+++++|||.+++.++ .+++++..+++.
T Consensus       213 ~~~~~i~AlDCEm~~t-e~g-~el-~RVt~VD~~~~vi~D~fVkP~~~VvDy~T~~SGIT~~~~e~~t~tl~dvq~~l~~  289 (380)
T KOG2248|consen  213 SKSPNIFALDCEMVVT-ENG-LEL-TRVTAVDRDGKVILDTFVKPNKPVVDYNTRYSGITEEDLENSTITLEDVQKELLE  289 (380)
T ss_pred             CCCCCeEEEEeeeeee-ccc-eee-EEeeeeeccCcEEeEEeecCCCcccccccccccccHHHHhcCccCHHHHHHHHHh
Confidence            4457799999999987 444 677 999999999999999999999999999999999999999865 589999999999


Q ss_pred             HHhcCCCccccccCCCCCeEEEeeCchhhhhhccccCCCcceeeccccccccccC-CCCccHHHHHHHHhCCcCCC--CC
Q 019380          200 ILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTN-LVSHSLKYLTRTYLGYDIQS--GV  276 (342)
Q Consensus       200 ~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~-~~~~~L~~l~~~~~~~~~~~--~~  276 (342)
                      |+             ..++|||||.++.||+.|++.||.  +|||+.++....+. ..+.+|+.||+.|||..||.  +.
T Consensus       290 ~~-------------~~~TILVGHSLenDL~aLKl~H~~--ViDTa~lf~~~~g~~~~k~sLk~L~~~~L~~~Iq~~~~~  354 (380)
T KOG2248|consen  290 LI-------------SKNTILVGHSLENDLKALKLDHPS--VIDTAVLFKHPTGPYPFKSSLKNLAKSYLGKLIQEGVGG  354 (380)
T ss_pred             hc-------------CcCcEEEeechhhHHHHHhhhCCc--eeeeeEEEecCCCCccchHHHHHHHHHHHHHHHhccCCC
Confidence            99             388999999999999999999998  99999999888773 67888999999999999993  48


Q ss_pred             CCcHHHHHHHHHHHHHHHhhhh
Q 019380          277 HDPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       277 H~A~~Da~~t~~l~~~~~~~~~  298 (342)
                      |++.+||.++++|+........
T Consensus       355 HdS~eDA~acm~Lv~~k~~~~~  376 (380)
T KOG2248|consen  355 HDSVEDALACMKLVKLKIKNSE  376 (380)
T ss_pred             CccHHHHHHHHHHHHHHHhccc
Confidence            9999999999999988776643

>PRK05168 ribonuclease T; Provisional

Probab=99.91  E-value=3.2e-24  Score=187.81  Aligned_cols=168  Identities=20%  Similarity=0.280  Sum_probs=132.1

Q ss_pred             CCCcceeccccccccc--CCCcccccceEEeecC-CCCe----EEeeecCC--CCCccccccccCCCCHhh-hcCCCChH
Q 019380          122 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDE-DENV----IFHTYVQP--QLPVTNYRYEVTGLTEED-IKNAMPLK  191 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~-~~~~----~~~~lv~p--~~~i~~~~~~i~GIt~e~-l~~~~~~~  191 (342)
                      ....++++|+||||++  .++++++ +++.+... +|.+    .|+++|+|  ..++++.++.+||||+++ +.+++++.
T Consensus        15 ~~~~~vv~D~ETTGl~~~~d~IieI-gaV~v~~d~~g~i~~~~~f~~lv~P~~~~~i~~~~~~ihGIt~e~~~~~~~~~~   93 (211)
T PRK05168         15 RGFLPVVIDVETAGFNAKTDALLEI-AAVTLKMDEQGWLYPDETLHFHVEPFEGANLEPEALAFNGIDPDNPLRGAVSEK   93 (211)
T ss_pred             cCCceEEEEeeCCCCCCCCCEEEEE-eEEEEEecCCCcEeccceEEEEECCCCCCCCCHHHHhhcCCCchhhhhcCCChH
Confidence            3455799999999987  4567777 87877532 4543    58999999  568999999999999986 78999999


Q ss_pred             HHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc----------CCCcceeeccccccccccCCCCccHH
Q 019380          192 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN----------YPDHMLRDTAKYRPLMKTNLVSHSLK  261 (342)
Q Consensus       192 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~----------~~~~~~~Dt~~l~~~~~~~~~~~~L~  261 (342)
                      +++.++.+|+.....     .....+.++||||+.||+.||+..          ++..+++||..+++.+++.   .+|.
T Consensus        94 ~~l~~~~~~l~~~~~-----~~~~~~~~lVaHNa~FD~~fL~~~~~r~~~~~~~~~~~~~iDt~~lar~~~~~---~~L~  165 (211)
T PRK05168         94 EALHEIFKMVRKGIK-----ASGCNRAILVAHNAHFDLSFLMAAAERAGLKRNPFHPFSTFDTATLSGLALGQ---TVLA  165 (211)
T ss_pred             HHHHHHHHHHHHHHH-----hcccCCceEEEeccHHhHHHHHHHHHHhCCCCCCCCCCcEeeHHHHHHHHcCC---CCHH
Confidence            999999998832100     000136899999999999999822          1123589999999887653   5899


Q ss_pred             HHHHHHhCCcCCC-CCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          262 YLTRTYLGYDIQS-GVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       262 ~l~~~~~~~~~~~-~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      .++..+ |+++.. .+|+|++||.+|++||.++.++..+
T Consensus       166 ~l~~~~-gl~~~~~~~H~Al~DA~ata~l~~~l~~~~~~  203 (211)
T PRK05168        166 KACQAA-GIEFDNKEAHSALYDTEKTAELFCEIVNRWKR  203 (211)
T ss_pred             HHHHHC-CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            999998 998653 4899999999999999999998755

>PRK05601 DNA polymerase III subunit epsilon; Validated

Probab=99.91  E-value=5.1e-24  Score=195.65  Aligned_cols=156  Identities=19%  Similarity=0.268  Sum_probs=129.2

Q ss_pred             CCCcceecccccccccC--CCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHH
Q 019380          122 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  197 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~  197 (342)
                      ....|++||+||||+++  +.++++ +++.+. .+|++  .|++||+|...+.+  ..|||||++||+++|+|.+++++|
T Consensus        44 ~~~~fVvlDiETTGLdp~~drIIeI-gAV~i~-~~g~ive~f~tLVnP~~~~~p--~~LHGIT~e~La~AP~f~eVl~el  119 (377)
T PRK05601         44 EAAPFVAVSIQTSGIHPSTSRLITI-DAVTLT-ADGEEVEHFHAVLNPGEDPGP--FHLHGLSAEEFAQGKRFSQILKPL  119 (377)
T ss_pred             CCCCEEEEEEECCCCCCCCCeEEEE-EEEEEE-cCCEEEEEEEEEECcCCCCCC--ccccCCCHHHHhcCCCHHHHHHHH
Confidence            44679999999999974  456677 777664 34555  69999999976544  479999999999999999999999


Q ss_pred             HHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc---------------------------------CCC-cceee
Q 019380          198 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN---------------------------------YPD-HMLRD  243 (342)
Q Consensus       198 ~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~---------------------------------~~~-~~~~D  243 (342)
                      .+||              ++.+|||||+.||++||...                                 .|. ..++|
T Consensus       120 ~~fL--------------~g~vLVaHNA~FD~~FL~~e~~r~~~~a~~~n~~~~r~~~~~~~~~rr~~~g~~p~p~~~iD  185 (377)
T PRK05601        120 DRLI--------------DGRTLILHNAPRTWGFIVSEAKRAMNAAARANRNRNRGNRRGGRGRRRQRVGHIPKPVVIVD  185 (377)
T ss_pred             HHHh--------------CCCEEEEECcHHHHHHHHHHHHHhhhhhhhcccccccccccccccccccccCCCCCCCCEEE
Confidence            9999              89999999999999998732                                 122 56899


Q ss_pred             ccccccccccCCCCccHHHHHHHHhCCcCC---------CCCCCcH--HHHHHHHHHHHHHHhh
Q 019380          244 TAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ---------SGVHDPY--EDCVSVMRLYKRFRRQ  296 (342)
Q Consensus       244 t~~l~~~~~~~~~~~~L~~l~~~~~~~~~~---------~~~H~A~--~Da~~t~~l~~~~~~~  296 (342)
                      |+.+++.+++...+++|..||.+| |++..         ...|+++  +||+.+++||.+..+.
T Consensus       186 TL~LARrl~p~l~~~rL~~La~~l-Gi~~p~~~A~~~Ra~~p~~~l~~~Da~ll~~l~~~~~~~  248 (377)
T PRK05601        186 TLATARRQGVALDDIRIRGVAHTL-GLDAPAAEASVERAQVPHRQLCREETLLVARLYFALRAS  248 (377)
T ss_pred             hHHHHHHHcCCCCCCCHHHHHHHh-CCCCCchhhhhhhhcCChhhhhhHHHHHHHHHHHHhhcc
Confidence            999999999988999999999999 98851         2258888  6999999999987433

>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins

Probab=99.89  E-value=3e-23  Score=176.93  Aligned_cols=153  Identities=22%  Similarity=0.261  Sum_probs=125.7

Q ss_pred             ceecccccccccC-------CCcccccceEEeecCCCCe--EEeeecCCCC--CccccccccCCCCHhhhcCCCChHHHH
Q 019380          126 AVAMDCEMVGGGS-------NGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVK  194 (342)
Q Consensus       126 ~v~~D~Ettg~~~-------~~~~~il~~v~vv~~~~~~--~~~~lv~p~~--~i~~~~~~i~GIt~e~l~~~~~~~~v~  194 (342)
                      +|++|+||||...       ++++++ +++.+....+++  .|+.+|+|..  .++++++.+||||++++.++|++.+|+
T Consensus         1 ~vv~D~Ettg~~~~~~~~~~~~IieI-gav~v~~~~~~~~~~f~~~i~P~~~~~i~~~~~~i~gIt~e~l~~~~~~~~vl   79 (176)
T cd06133           1 YLVIDFEATCWEGNSKPDYPNEIIEI-GAVLVDVKTKEIIDTFSSYVKPVINPKLSDFCTELTGITQEDVDNAPSFPEVL   79 (176)
T ss_pred             CEEEEeeccccCCCCCCCCCcceEEE-EEEEEEcCCCeEEeeeeeeECCCcCCchhHHHHHhcCcCHHHHhcCCCHHHHH
Confidence            5899999999874       567777 666653333323  5999999997  899999999999999999999999999


Q ss_pred             HHHHHHHhcCCCccccccCCCCCe--EEEeeCchhhhhhcc-------cc--C-CCcceeeccccccccccCCCCccHHH
Q 019380          195 DKILEILNNGESTGRLMLDDGKAR--LLVGHGLEHDLDSLR-------MN--Y-PDHMLRDTAKYRPLMKTNLVSHSLKY  262 (342)
Q Consensus       195 ~~~~~~l~~~~~~~~~~~~~~~~~--~lvgh~~~~D~~~l~-------~~--~-~~~~~~Dt~~l~~~~~~~~~~~~L~~  262 (342)
                      ++|.+|+              ++.  .+++|+..+|+.++.       ..  . ....++|+..+++...+....++|.+
T Consensus        80 ~~~~~~l--------------~~~~~~~~v~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~L~~  145 (176)
T cd06133          80 KEFLEWL--------------GKNGKYAFVTWGDWDLKDLLQNQCKYKIINLPPFFRQWIDLKKEFAKFYGLKKRTGLSK  145 (176)
T ss_pred             HHHHHHH--------------HhCCCeEEEeecHhhHHHHHHHHHHhcCCCCcccccceEEHHHHHHHHhCCCCCCCHHH
Confidence            9999999              554  455555689988766       11  1 12678999999998888778999999


Q ss_pred             HHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHH
Q 019380          263 LTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFR  294 (342)
Q Consensus       263 l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~  294 (342)
                      |+.+| |++..+..|+|++||++|++||.++.
T Consensus       146 l~~~~-gi~~~~~~H~Al~DA~~~a~l~~~~~  176 (176)
T cd06133         146 ALEYL-GLEFEGRHHRGLDDARNIARILKRLL  176 (176)
T ss_pred             HHHHC-CCCCCCCCcCcHHHHHHHHHHHHHhC
Confidence            99988 99976569999999999999998863

This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional ho

>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type

Probab=99.89  E-value=3.2e-23  Score=217.90  Aligned_cols=158  Identities=23%  Similarity=0.394  Sum_probs=139.3

Q ss_pred             CCcceeccccccccc--CCCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHH
Q 019380          123 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  198 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~  198 (342)
                      ...+|+||+||||++  .+.++++ +++.+.  +|.+  .|+.+|+|..+|++.++++||||+++|+++|++.+|+++|.
T Consensus       189 ~~~~VVfDiETTGL~~~~d~IIEI-GAVkv~--~g~iid~f~~~V~P~~~I~~~~~~ltGIT~e~L~~ap~~~evl~~f~  265 (1213)
T TIGR01405       189 DATYVVFDIETTGLSPQYDEIIEF-GAVKVK--NGRIIDKFQFFIKPHEPLSAFVTELTGITQDMLENAPEIEEVLEKFK  265 (1213)
T ss_pred             CCcEEEEEeEecCCCCCCCeEEEE-EEEEEE--CCeEEEEEEEEECCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHHHHH
Confidence            457999999999986  4677888 888774  4555  49999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc-----CC--CcceeeccccccccccCCCCccHHHHHHHHhCCc
Q 019380          199 EILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-----YP--DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       199 ~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-----~~--~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  271 (342)
                      +|+              ++.+|||||+.||+.||+..     .+  ...++||+.+++.+.|...+++|..||+.| |++
T Consensus       266 ~fl--------------~~~iLVaHNa~FD~~fL~~~~~r~g~~~~~~~~IDTl~lar~l~p~~k~~kL~~Lak~l-gi~  330 (1213)
T TIGR01405       266 EFF--------------KDSILVAHNASFDIGFLNTNFEKVGLEPLENPVIDTLELARALNPEYKSHRLGNICKKL-GVD  330 (1213)
T ss_pred             HHh--------------CCCeEEEEChHHHHHHHHHHHHHcCCCccCCCEeEHHHHHHHHhccCCCCCHHHHHHHc-CCC
Confidence            999              78999999999999999822     21  267899999999998888899999999998 999


Q ss_pred             CCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          272 IQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       272 ~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      +.. +|+|++||.+|++||.+++++..+
T Consensus       331 ~~~-~HrAl~DA~aTa~I~~~ll~~l~~  357 (1213)
T TIGR01405       331 LDD-HHRADYDAEATAKVFKVMVEQLKE  357 (1213)
T ss_pred             CCC-CcCHHHHHHHHHHHHHHHHHHHHH
Confidence            654 999999999999999999988654

The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.

>PRK09182 DNA polymerase III subunit epsilon; Validated

Probab=99.87  E-value=5.7e-22  Score=180.88  Aligned_cols=157  Identities=18%  Similarity=0.236  Sum_probs=121.0

Q ss_pred             cCCCCcceecccccccccC--CCcccccceEEeec-CCCCe-----EEeeecCCCCCccccccccCCCCHhhhcCCCChH
Q 019380          120 TCRGPKAVAMDCEMVGGGS--NGTLDLCARVCLVD-EDENV-----IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLK  191 (342)
Q Consensus       120 ~~~~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~-~~~~~-----~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~  191 (342)
                      ......++++|+||||+++  +.++++ +.+.+.. .+|.+     .|+.+++|..+|++.++.+||||++|+.+++...
T Consensus        33 ~~~~~~~vvlD~ETTGLd~~~d~IIEI-g~V~v~~~~~g~i~~v~~~~~~lv~P~~~I~~~~t~IhGIt~e~v~~~~~~~  111 (294)
T PRK09182         33 GEFVRLGVILDTETTGLDPRKDEIIEI-GMVAFEYDDDGRIGDVLDTFGGLQQPSRPIPPEITRLTGITDEMVAGQTIDP  111 (294)
T ss_pred             CCCCCeEEEEEeeCCCCCCCCCeEEEE-EEEEEEecCCCceeeeeeEEEEEeCCCCCCCHHHHHhcCCCHHHHhcCCCcH
Confidence            3455678999999999974  678888 7777752 24533     4899999999999999999999999999998754


Q ss_pred             HHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc---CCCcceeeccccccccccCCCCccHHHHHHHHh
Q 019380          192 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN---YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYL  268 (342)
Q Consensus       192 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~---~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~  268 (342)
                      +   .|.+|+.             ...+|||||+.||+.||+..   ++...+.+++....+..+...+++|.+|+..| 
T Consensus       112 ~---~l~~fl~-------------~~~vlVAHNA~FD~~fL~~~~~~~~~~~~~ct~~~i~~~~~~~~~~kL~~La~~~-  174 (294)
T PRK09182        112 A---AVDALIA-------------PADLIIAHNAGFDRPFLERFSPVFATKPWACSVSEIDWSARGFEGTKLGYLAGQA-  174 (294)
T ss_pred             H---HHHHHhc-------------CCCEEEEeCHHHHHHHHHHHHHhccCCcccccHHHHhhccccCCCCCHHHHHHHc-
Confidence            4   4666771             33699999999999999833   22244567665444444455789999999999 


Q ss_pred             CCcCCCCCCCcHHHHHHHHHHHHHHHhh
Q 019380          269 GYDIQSGVHDPYEDCVSVMRLYKRFRRQ  296 (342)
Q Consensus       269 ~~~~~~~~H~A~~Da~~t~~l~~~~~~~  296 (342)
                      |.  ..++|+|++||.+|++||..++..
T Consensus       175 g~--~~~aHrAl~Da~Ata~ll~~~l~~  200 (294)
T PRK09182        175 GF--FHEGHRAVDDCQALLELLARPLPE  200 (294)
T ss_pred             CC--CCCCcChHHHHHHHHHHHHHHHhh
Confidence            73  346999999999999999987654

>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]

Probab=99.87  E-value=8.4e-22  Score=176.85  Aligned_cols=157  Identities=25%  Similarity=0.370  Sum_probs=136.2

Q ss_pred             Ccceeccccccccc--CCCcccccceEEeecCCCC-eEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 019380          124 PKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  200 (342)
Q Consensus       124 ~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~-~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~  200 (342)
                      ..++++|+||||.+  .+.++++ +++.+++..-. ..|+.+++|..++++.+.++||||.+++.++|.|.++++++.+|
T Consensus        13 ~~~vv~D~ETtg~~~~~~~iieI-gav~~~~~~i~~~~~~~~v~P~~~i~~~~~~i~git~e~l~~~p~~~~v~~~~~~~   91 (243)
T COG0847          13 TRFVVIDLETTGLNPKKDRIIEI-GAVTLEDGRIVERSFHTLVNPERPIPPEIFKIHGITDEMLADAPKFAEVLPEFLDF   91 (243)
T ss_pred             CcEEEEecccCCCCCCCCceEEE-EeEEEECCeeecceeEEEECCCCCCChhhhhhcCCCHHHHhcCCCHHHHHHHHHHH
Confidence            67899999999986  6778888 88888544222 23899999988999999999999999999999999999999999


Q ss_pred             HhcCCCccccccCCCCC-eEEEeeCchhhhhhccc-------cCCCcceeeccccccccccCCCCccHHHHHHHHhCCcC
Q 019380          201 LNNGESTGRLMLDDGKA-RLLVGHGLEHDLDSLRM-------NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDI  272 (342)
Q Consensus       201 l~~~~~~~~~~~~~~~~-~~lvgh~~~~D~~~l~~-------~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~  272 (342)
                      +              ++ .++||||+.||+.||+.       ..+...++||..+.+..+++...++|+.||.++ |+..
T Consensus        92 i--------------~~~~~~Vahna~fD~~fl~~~~~~~~~~~~~~~~~~t~~~~r~~~~~~~~~~L~~l~~~~-gi~~  156 (243)
T COG0847          92 I--------------GGLRLLVAHNAAFDVGFLRVESERLGIEIPGDPVLDTLALARRHFPGFDRSSLDALAERL-GIDR  156 (243)
T ss_pred             H--------------CCCCeEEEEchhhcHHHHHHHHHHcCCCcccCceehHHHHHHHHcCCCccchHHHHHHHc-CCCc
Confidence            9              66 99999999999999982       222356889999999999988899999999988 8884


Q ss_pred             CC-CCCCcHHHHHHHHHHHHHHHhh
Q 019380          273 QS-GVHDPYEDCVSVMRLYKRFRRQ  296 (342)
Q Consensus       273 ~~-~~H~A~~Da~~t~~l~~~~~~~  296 (342)
                      .. ..|+|+.||.+++++|..+...
T Consensus       157 ~~~~~H~Al~Da~~~a~~~~~~~~~  181 (243)
T COG0847         157 NPFHPHRALFDALALAELFLLLQTG  181 (243)
T ss_pred             CCcCCcchHHHHHHHHHHHHHHHhc
Confidence            32 2799999999999999999985

>PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III

Probab=99.87  E-value=7.1e-24  Score=177.41  Aligned_cols=149  Identities=27%  Similarity=0.457  Sum_probs=126.8

Q ss_pred             eecccccccccC--CCcccccceEEeecCC--CCeEEeeecCCCCC--ccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 019380          127 VAMDCEMVGGGS--NGTLDLCARVCLVDED--ENVIFHTYVQPQLP--VTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  200 (342)
Q Consensus       127 v~~D~Ettg~~~--~~~~~il~~v~vv~~~--~~~~~~~lv~p~~~--i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~  200 (342)
                      |+||+||||.+.  +.++++ +++.+.+..  ....|+++|+|..+  ++++++.+||||.+++.+++++.+++++|.+|
T Consensus         1 v~~D~Ettg~~~~~~~iiei-g~v~~~~~~~~~~~~~~~~i~p~~~~~i~~~~~~~~gIt~~~l~~~~~~~~~~~~~~~~   79 (164)
T PF00929_consen    1 VVFDTETTGLDPRQDEIIEI-GAVKVDDDENEEVESFNSLIRPEEPPKISPWATKVHGITQEDLEDAPSFEEALDEFEEF   79 (164)
T ss_dssp             EEEEEEESSSTTTTCTEEEE-EEEEEETTTTEEEEEEEEEBEHSSHCSSEHHHHHHHHHCHHHHHCHCEHHHHHHHHHHH
T ss_pred             cEEEeEcCCCCCCCCeEEEE-EEEEeeCCccccceeeeecccccccccCCHHHeeecCCcccccccCCcHHHHHHhhhhh
Confidence            689999999875  678888 888887665  34479999999987  99999999999999999999999999999999


Q ss_pred             HhcCCCccccccCCCCCeEEEeeCchhhhhhcc--------ccCC-CcceeeccccccccccCCCCccHHHHHHHHhCCc
Q 019380          201 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR--------MNYP-DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       201 l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~--------~~~~-~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  271 (342)
                      +.             ++.++||||+.||..++.        ..+| ...++|+..+.+...+....++|+.|++.| |++
T Consensus        80 ~~-------------~~~~~v~~n~~fd~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~  145 (164)
T PF00929_consen   80 LK-------------KNDILVGHNASFDIGFLRREDKRFLGKPIPKPNPFIDTLELARALFPNRKKYSLDDLAEYF-GIP  145 (164)
T ss_dssp             HH-------------HHTEEEETTCCHEEESSHHHHHHHHHHHHHHHHHECEEEEEHHHHHHHHHHHSHHHHHHHT-TSS
T ss_pred             hh-------------cccccccccccchhhHHHHhhhhcccccccccchhhhhhHHHHHHhhccccCCHHHHHHHc-CCC
Confidence            92             368999999999998887        1133 245889999888877765568999999999 888


Q ss_pred             CCCCCCCcHHHHHHHHHHH
Q 019380          272 IQSGVHDPYEDCVSVMRLY  290 (342)
Q Consensus       272 ~~~~~H~A~~Da~~t~~l~  290 (342)
                      ....+|+|++||++|++||
T Consensus       146 ~~~~~H~Al~Da~~t~~l~  164 (164)
T PF00929_consen  146 FDGTAHDALDDARATAELF  164 (164)
T ss_dssp             STSTTTSHHHHHHHHHHHH
T ss_pred             CCCCCcChHHHHHHHhCcC
Confidence            5555799999999999997

Ribonuclease T is responsible for the end-turnover of tRNA,and removes the terminal AMP residue from uncharged tRNA. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria, and also exhibits 3' to 5' exonuclease activity.; PDB: 3CM6_A 3CM5_A 3CG7_A 1ZBU_B 1ZBH_A 1W0H_A 3NGY_C 2IS3_B 3NH1_C 3NH2_F ....

>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family

Probab=99.86  E-value=7.7e-22  Score=164.44  Aligned_cols=147  Identities=28%  Similarity=0.409  Sum_probs=124.4

Q ss_pred             eeccccccccc--CCCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHh
Q 019380          127 VAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  202 (342)
Q Consensus       127 v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~  202 (342)
                      |++|+||||..  .++++++ +.+.+ +.++++  .|+.+++|...+.+..+.++||+++++.+++++.+++++|.+|+ 
T Consensus         1 v~~D~Ettg~~~~~~~iiei-~~v~~-~~~~~~~~~~~~~i~p~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~~~l-   77 (159)
T cd06127           1 VVFDTETTGLDPKKDRIIEI-GAVKV-DGGIEIVERFETLVNPGRPIPPEATAIHGITDEMLADAPPFEEVLPEFLEFL-   77 (159)
T ss_pred             CeEEeeCCCcCCCCCeEEEE-EEEEE-ECCcChhhhhheeeCcCCcCCHhheeccCCCHHHHhcCCCHHHHHHHHHHHH-
Confidence            57899999987  4667777 55555 333333  58999999999999999999999999999999999999999999 


Q ss_pred             cCCCccccccCCCCCeEEEeeCchhhhhhcccc-------CCCcceeeccccccccccCCCCccHHHH-HHHHhCCcCCC
Q 019380          203 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YPDHMLRDTAKYRPLMKTNLVSHSLKYL-TRTYLGYDIQS  274 (342)
Q Consensus       203 ~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-------~~~~~~~Dt~~l~~~~~~~~~~~~L~~l-~~~~~~~~~~~  274 (342)
                                   ++.++||||+.||+.+|+..       .....++|++.+++..++....++|..+ +..+ |+. ..
T Consensus        78 -------------~~~~~v~~n~~fD~~~l~~~~~~~~~~~~~~~~iDt~~~~~~~~~~~~~~~l~~~~~~~~-~~~-~~  142 (159)
T cd06127          78 -------------GGRVLVAHNASFDLRFLNRELRRLGGPPLPNPWIDTLRLARRLLPGLRSHRLGLLLAERY-GIP-LE  142 (159)
T ss_pred             -------------CCCEEEEeCcHhhHHHHHHHHHHhCCCCCCCCeeEHHHHHHHHcCCCCcCchHHHHHHHc-CCC-CC
Confidence                         66899999999999999832       2347799999999999888888999998 6655 876 45


Q ss_pred             CCCCcHHHHHHHHHHHH
Q 019380          275 GVHDPYEDCVSVMRLYK  291 (342)
Q Consensus       275 ~~H~A~~Da~~t~~l~~  291 (342)
                      .+|+|++||++|++||.
T Consensus       143 ~~H~Al~Da~~t~~l~~  159 (159)
T cd06127         143 GAHRALADALATAELLL  159 (159)
T ss_pred             CCCCcHHHHHHHHHHhC
Confidence            69999999999999983

DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.

>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins

Probab=99.86  E-value=5e-22  Score=170.48  Aligned_cols=148  Identities=22%  Similarity=0.262  Sum_probs=114.6

Q ss_pred             eeccccccccc--CCCcccccceEEeecCCCCe--EEeeecCCCC--CccccccccCCCCHhhhcC-CCChHHHHHHHHH
Q 019380          127 VAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKN-AMPLKEVKDKILE  199 (342)
Q Consensus       127 v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~--~i~~~~~~i~GIt~e~l~~-~~~~~~v~~~~~~  199 (342)
                      ++||+||||++  .+.++++ +.+.+ +.++.+  .|+.+++|..  .+++.+..+||||+++|.+ +|++.+++++|.+
T Consensus         1 ~~~D~ETTGl~~~~d~Iiei-g~v~v-~~~~~~~~~~~~~v~p~~~~~~~~~a~~ihGIt~e~l~~~~~~~~~~l~~~~~   78 (183)
T cd06138           1 LFYDYETFGLNPSFDQILQF-AAIRT-DENFNEIEPFNIFCRLPPDVLPSPEALIVTGITPQQLLKEGLSEYEFIAKIHR   78 (183)
T ss_pred             CEEEeecCCCCCCCCceEEE-EEEEE-CCCCCCccceeEEEeCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHHHHHHHH
Confidence            46999999987  4567777 66555 344344  4899999874  5677888999999999999 8999999999999


Q ss_pred             HHhcCCCccccccCCCCCeEEEeeC-chhhhhhccccC------C-------Ccceeeccccccccc---c---------
Q 019380          200 ILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRMNY------P-------DHMLRDTAKYRPLMK---T---------  253 (342)
Q Consensus       200 ~l~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~~~~------~-------~~~~~Dt~~l~~~~~---~---------  253 (342)
                      |+            +..+.++|||| +.||+.||+...      +       .+..+|+..+++...   +         
T Consensus        79 ~~------------~~~~~~lVahn~~~FD~~fL~~~~~r~~~~~~~~~~~~~~~~~dtl~l~r~~~~~~~~~~~~~~~~  146 (183)
T cd06138          79 LF------------NTPGTCIVGYNNIRFDDEFLRFAFYRNLYDPYTWEWKNGNSRWDLLDVVRAYYALRPDGIVWPKND  146 (183)
T ss_pred             HH------------ccCCCcEEeeCchhhHHHHHHHHHHHCCCcccceeccCCccccccHHHHHHHHhhChhhccCcccc
Confidence            99            22467999997 899999998221      1       133578887665432   2         


Q ss_pred             -CCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHH
Q 019380          254 -NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLY  290 (342)
Q Consensus       254 -~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~  290 (342)
                       ...+++|++|+++| |++. .++|||++||++|++|.
T Consensus       147 ~~~~~~~L~~l~~~~-gi~~-~~~H~Al~Da~~ta~l~  182 (183)
T cd06138         147 DGKPSFKLEDLAQAN-GIEH-SNAHDALSDVEATIALA  182 (183)
T ss_pred             CCCcchhHHHHHHHC-CCCc-cccccHHHHHHHHHHHh
Confidence             23578999999998 9985 56999999999999986

This subfamily is composed of the N-terminal domain of Escherichia coli exonuclease I (ExoI) and similar proteins. ExoI is a monomeric enzyme that hydrolyzes single stranded DNA in the 3' to 5' direction. It plays a role in DNA recombination and repair. It primarily functions in repairing frameshift mutations. The N-terminal domain of ExoI is a DEDDh-type DnaQ-like 3'-5 exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The ExoI structure is unique among DnaQ family enzymes in that there is a large distance between the two metal ions required for catalysis and the catalytic histidine is oriented away from the active site.

>PTZ00315 2'-phosphotransferase; Provisional

Probab=99.86  E-value=2.1e-21  Score=188.14  Aligned_cols=179  Identities=18%  Similarity=0.174  Sum_probs=136.7

Q ss_pred             ccccccCCCCcceeccccccccc-----CCCcccccceEEeecCCCCe--EEeeecCCCC--CccccccccCCCCHhhhc
Q 019380          115 IDEKRTCRGPKAVAMDCEMVGGG-----SNGTLDLCARVCLVDEDENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIK  185 (342)
Q Consensus       115 ~~~~~~~~~~~~v~~D~Ettg~~-----~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~--~i~~~~~~i~GIt~e~l~  185 (342)
                      ++.....+...|++||+||||..     .++++|+ +++.+-..++++  .|++||+|..  +++.+++.+||||++||+
T Consensus        47 ~~~~~~q~~d~~IV~DlETTgl~~~~~~~dEIIEI-GaV~Vd~~ng~Ii~~F~~yVkP~~~p~Ls~fct~LTGITqe~V~  125 (582)
T PTZ00315         47 FPEIAPQPFDAYVVLDFEATCEADRRIEDAEVIEF-PMVLVDARTATPVAEFQRYVRPVKNPVLSRFCTELTGITQSMVS  125 (582)
T ss_pred             CcccccCCCCeEEEEEEecCCCCCCCCCCCceEEE-EEEEEEccCCEEEEEEEEEECCCCCCCCChhHhhhcCcCHHHHh
Confidence            33444455678999999999975     3677888 666663246666  4899999986  699999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhh-hcc--------ccCC--Ccceeecc-cccccccc
Q 019380          186 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLR--------MNYP--DHMLRDTA-KYRPLMKT  253 (342)
Q Consensus       186 ~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~-~l~--------~~~~--~~~~~Dt~-~l~~~~~~  253 (342)
                      +||+|.+|+.+|.+||.+..    ++.++..+..+|+||.+||+. ||.        ...|  ...++|.. .+.+..++
T Consensus       126 ~Ap~F~eVl~ef~~fL~~~~----~~e~~~~~~~~vah~g~fDl~~fL~~e~~~~~~~g~p~~f~~widLk~~lar~l~p  201 (582)
T PTZ00315        126 RADPFPVVYCEALQFLAEAG----LGDAPPLRSYCVVTCGDWDLKTMLPSQMRVSGQQGTPLSFQRWCNLKKYMSQLGFG  201 (582)
T ss_pred             cCCCHHHHHHHHHHHHhccc----cccccccCceEEEeccHHHHHHHHHHHHHHhhhcCCCcccceEEEhHHHHHHHhCc
Confidence            99999999999999994321    111222345899999999995 774        1233  24466653 34455444


Q ss_pred             -----------CCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          254 -----------NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       254 -----------~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                                 ....++|.++++.+ |+++.+.+|+|++||++|++||.++++++..
T Consensus       202 ~~~~~~~~~~~~~~~~~L~~al~~l-gL~~eGr~HrAlDDA~ntA~L~~~Ll~~g~~  257 (582)
T PTZ00315        202 NGSGCGGGATPPLGPSDMPDMLQML-GLPLQGRHHSGIDDCRNIAAVLCELLRRGLV  257 (582)
T ss_pred             cccccccccccccCCcCHHHHHHHC-CCCCCCCCcCcHHHHHHHHHHHHHHHHcCCE
Confidence                       34578999999988 9998777999999999999999999998765

>PRK00448 polC DNA polymerase III PolC; Validated

Probab=99.83  E-value=1.7e-20  Score=199.73  Aligned_cols=157  Identities=22%  Similarity=0.391  Sum_probs=137.7

Q ss_pred             Ccceeccccccccc--CCCcccccceEEeecCCCCe--EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHH
Q 019380          124 PKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILE  199 (342)
Q Consensus       124 ~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~  199 (342)
                      ..+|++|+||||++  .+.++++ +++.+  .+|.+  .|+.+|+|..++++.++.+||||++++.++|++.+|+++|.+
T Consensus       419 ~~~VVfDLETTGL~~~~deIIEI-gAV~V--~~G~iie~F~~~V~P~~~I~~~~~~LTGIT~e~L~~aps~~EaL~~f~~  495 (1437)
T PRK00448        419 ATYVVFDVETTGLSAVYDEIIEI-GAVKI--KNGEIIDKFEFFIKPGHPLSAFTTELTGITDDMVKDAPSIEEVLPKFKE  495 (1437)
T ss_pred             CcEEEEEhhhcCCCCchhhhhee-eeEEE--eCCeEeeeEEEEECCCCCCCHHHHHHhCCCHHHHcCCCCHHHHHHHHHH
Confidence            56999999999986  4567777 77766  35555  499999999999999999999999999999999999999999


Q ss_pred             HHhcCCCccccccCCCCCeEEEeeCchhhhhhcc-------ccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcC
Q 019380          200 ILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDI  272 (342)
Q Consensus       200 ~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~  272 (342)
                      |+              ++.+|||||+.||+.||+       +..+...++||+.+++.+.+....++|..||+.| |+.+
T Consensus       496 fi--------------gg~vLVAHNa~FD~~fL~~~l~rlgl~~l~~~~IDTLelar~l~p~~k~~kL~~LAk~l-GL~~  560 (1437)
T PRK00448        496 FC--------------GDSILVAHNASFDVGFINTNYEKLGLEKIKNPVIDTLELSRFLYPELKSHRLNTLAKKF-GVEL  560 (1437)
T ss_pred             Hh--------------CCCEEEEeCccccHHHHHHHHHHcCCccccccceeHHHHHHHHcCccccccHHHHHHHc-CCCC
Confidence            99              889999999999999986       2223467899999999998888899999999998 9985


Q ss_pred             CCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          273 QSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       273 ~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      . ++|+|++||.+|++||.+++++..+
T Consensus       561 ~-~~HrAl~DA~aTa~lf~~ll~~l~~  586 (1437)
T PRK00448        561 E-HHHRADYDAEATAYLLIKFLKDLKE  586 (1437)
T ss_pred             C-CCcChHHHHHHHHHHHHHHHHHHHH
Confidence            4 5899999999999999999988754

>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins

Probab=99.82  E-value=1.1e-20  Score=160.66  Aligned_cols=151  Identities=17%  Similarity=0.180  Sum_probs=110.8

Q ss_pred             ceecccccccccC--CCcccccceEEeecCCCCe--EEeeecCCCCCccc----ccccc---CCCCHhhhcCCCChHHHH
Q 019380          126 AVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTN----YRYEV---TGLTEEDIKNAMPLKEVK  194 (342)
Q Consensus       126 ~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~----~~~~i---~GIt~e~l~~~~~~~~v~  194 (342)
                      ++++|+||||+++  +.++++ +++.+.+..+++  .|+.+|+|..+++.    +...+   |||++++++++|++.+++
T Consensus         1 lv~iD~ETTGl~p~~d~IieI-gaV~~~~~~~~i~~~f~~~i~p~~~~~~~~~~~~~~ih~~tgIt~~~l~~~~~~~~vl   79 (173)
T cd06135           1 LVWIDLEMTGLDPEKDRILEI-ACIITDGDLNIIAEGPELVIHQPDEVLDGMDEWCTEMHTKSGLTERVRASTVTLAQAE   79 (173)
T ss_pred             CEEEEEecCCCCCCCCeeEEE-EEEEEeCCCceecCceeEEECCCHHHhhhccHHHHHcccccccHHHHHhCCCCHHHHH
Confidence            5789999999884  667788 777653323333  49999999976553    34455   599999999999999999


Q ss_pred             HHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccccC-----CC-cceeec---cccccccccCCCCccHHHHHH
Q 019380          195 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY-----PD-HMLRDT---AKYRPLMKTNLVSHSLKYLTR  265 (342)
Q Consensus       195 ~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~-----~~-~~~~Dt---~~l~~~~~~~~~~~~L~~l~~  265 (342)
                      .+|.+|+.+..        .....+|||||+.||+.||+...     +. ++.+|+   ..+++.++|...+        
T Consensus        80 ~~~~~f~~~~~--------~~~~~~lvgh~~~FD~~fL~~~~~~~~~~~~~~~~D~~~l~~l~~~l~p~~~~--------  143 (173)
T cd06135          80 AELLEFIKKYV--------PKGKSPLAGNSVHQDRRFLDKYMPELEEYLHYRILDVSSIKELARRWYPEIYR--------  143 (173)
T ss_pred             HHHHHHHHHhc--------CCCCCceeecchhhCHHHHHHHHHHHhccCCcchhhHHHHHHHHHHhCcHhhh--------
Confidence            99999993210        01346999999999999998322     21 456787   4466666554322        


Q ss_pred             HHhCCcCCCCCCCcHHHHHHHHHHHHHHHhh
Q 019380          266 TYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ  296 (342)
Q Consensus       266 ~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~  296 (342)
                       + ++. ....|||++||++|+.+|+.+++-
T Consensus       144 -~-~~~-~~~~HrAl~Da~~~~~~~~~~~~~  171 (173)
T cd06135         144 -K-APK-KKGTHRALDDIRESIAELKYYREN  171 (173)
T ss_pred             -c-CCC-CCCCcchHHHHHHHHHHHHHHHHH
Confidence             2 555 455899999999999999998864

Oligoribonuclease (Orn) is a DEDDh-type DnaQ-like 3'-5' exoribonuclease that is responsible for degrading small oligoribonucleotides to mononucleotides. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Orn is essential for Escherichia coli survival. The human homolog, also called Sfn (small fragment nuclease), is able to hydrolyze short single-stranded RNA and DNA oligomers. It plays a role in cellular nucleotide recycling.

>PRK11779 sbcB exonuclease I; Provisional

Probab=99.82  E-value=6.4e-20  Score=176.77  Aligned_cols=166  Identities=18%  Similarity=0.248  Sum_probs=124.0

Q ss_pred             CCCcceecccccccccC--CCcccccceEEeecCCCCe---EEeeecCCCCC--ccccccccCCCCHhhhcC-CCChHHH
Q 019380          122 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENV---IFHTYVQPQLP--VTNYRYEVTGLTEEDIKN-AMPLKEV  193 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~---~~~~lv~p~~~--i~~~~~~i~GIt~e~l~~-~~~~~~v  193 (342)
                      ....|+++|+||||+++  +.++++ ++|.+. .++.+   .+..+++|...  +++.+..+||||++++.+ +.+..++
T Consensus         4 ~~~~fvv~D~ETTGLdP~~DrIIei-AaVrvd-~~~~~i~e~~~~~~~P~~~~lp~p~a~~IhGIT~e~l~~~g~~e~e~   81 (476)
T PRK11779          4 MQPTFLWHDYETFGANPALDRPAQF-AGIRTD-ADLNIIGEPLVFYCKPADDYLPSPEAVLITGITPQEALEKGLPEAEF   81 (476)
T ss_pred             CCCcEEEEEEECCCCCCCCCeeEEE-EEEEEe-CCCceecceeEEEEcCCcCcCCCHHHHHHhCCCHHHHHhcCCCHHHH
Confidence            45569999999999984  667777 777663 33322   48999999853  456788999999999965 4578999


Q ss_pred             HHHHHHHHhcCCCccccccCCCCCeEEEeeC-chhhhhhccccCC----------------Ccceeecccccccc-----
Q 019380          194 KDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRMNYP----------------DHMLRDTAKYRPLM-----  251 (342)
Q Consensus       194 ~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~~~~~----------------~~~~~Dt~~l~~~~-----  251 (342)
                      +.+|.+++.            ..++++|||| +.||..||+..+.                ...++|++.+....     
T Consensus        82 ~~~i~~~l~------------~~~~~lVGhNni~FD~eflr~~~~r~~~d~y~~~~~~~n~r~D~LDl~rl~~~lrp~~i  149 (476)
T PRK11779         82 AARIHAEFS------------QPGTCILGYNNIRFDDEVTRYIFYRNFYDPYAREWQNGNSRWDLLDVVRACYALRPEGI  149 (476)
T ss_pred             HHHHHHHHh------------cCCCEEEEeCchhhcHHHHHHHHHhccchHHHHHhcCCCCccCHHHHHHHHHHhccccc
Confidence            999999992            1468999997 7999999873211                01234544433332     


Q ss_pred             -cc----CCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhhhhhh
Q 019380          252 -KT----NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEI  303 (342)
Q Consensus       252 -~~----~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~~~~~  303 (342)
                       +|    +..+++|+.|+..+ |++ ..++|+|++||++|++|+..+.++..+++++
T Consensus       150 ~~P~~~~g~~s~rLe~L~~~~-gI~-~~~AHdALsDa~aT~~la~~l~~~qP~l~~~  204 (476)
T PRK11779        150 NWPENEDGLPSFKLEHLTKAN-GIE-HENAHDAMSDVYATIAMAKLIKQKQPKLFDY  204 (476)
T ss_pred             cCcccccCCCCCcHHHHHHHc-CCC-CCCCCCcHHHHHHHHHHHHHHHHhChHHHHH
Confidence             22    24679999999999 988 4569999999999999999999886565544

>PRK05359 oligoribonuclease; Provisional

Probab=99.81  E-value=2.3e-20  Score=159.31  Aligned_cols=154  Identities=18%  Similarity=0.231  Sum_probs=116.0

Q ss_pred             CCcceeccccccccc--CCCcccccceEEeecCCCCeE---EeeecCCCCC----ccccccccC---CCCHhhhcCCCCh
Q 019380          123 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVI---FHTYVQPQLP----VTNYRYEVT---GLTEEDIKNAMPL  190 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~~---~~~lv~p~~~----i~~~~~~i~---GIt~e~l~~~~~~  190 (342)
                      ...++++|+||||++  .+.++|+ +++.+ +.+..++   |..+++|...    +++++..+|   |||+++++++|++
T Consensus         2 ~~~~vvlD~ETTGLdp~~d~IieI-gaV~~-~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~ih~~tGIt~~~l~~~~~~   79 (181)
T PRK05359          2 EDNLIWIDLEMTGLDPERDRIIEI-ATIVT-DADLNILAEGPVIAIHQSDEALAAMDEWNTRTHTRSGLIDRVRASTVSE   79 (181)
T ss_pred             CCcEEEEEeecCCCCCCCCeEEEE-EEEEE-cCCceEcccceEEEECCCHHHhhccChHHHHhcccccCcHHHHhcCCCH
Confidence            457999999999987  4667777 66644 4444333   8889999864    456677776   8999999999999


Q ss_pred             HHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccccCC-----C-cceee--cc-ccccccccCCCCccHH
Q 019380          191 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP-----D-HMLRD--TA-KYRPLMKTNLVSHSLK  261 (342)
Q Consensus       191 ~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~-----~-~~~~D--t~-~l~~~~~~~~~~~~L~  261 (342)
                      .+|+.+|++|+...-        ..++.+|||||+.||+.||+...+     . ++++|  +. .+++.++|..      
T Consensus        80 ~e~~~~~l~fl~~~~--------~~~~~~l~g~~v~FD~~FL~~~~~~~~~~l~~~~~Dv~tl~~l~r~~~P~~------  145 (181)
T PRK05359         80 AEAEAQTLEFLKQWV--------PAGKSPLCGNSIGQDRRFLARYMPELEAYFHYRNLDVSTLKELARRWKPEI------  145 (181)
T ss_pred             HHHHHHHHHHHHHhc--------CCCCCceeecchhhCHHHHHHHHHHhcccCCCcccchhHHHHHHHHhChhh------
Confidence            999999999993210        014578999999999999994321     1 55677  44 5677766642      


Q ss_pred             HHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhh
Q 019380          262 YLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       262 ~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~  298 (342)
                           +.+++ ..+.|||++||+++.+.|..+++...
T Consensus       146 -----~~~~~-~~~~HRal~D~~~s~~~~~~~~~~~~  176 (181)
T PRK05359        146 -----LNGFK-KQGTHRALADIRESIAELKYYREHFF  176 (181)
T ss_pred             -----hhCCC-CcCCcccHHHHHHHHHHHHHHHHHhc
Confidence                 22666 55689999999999999999998753

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.69  E-value=1.3e-17  Score=145.34  Aligned_cols=107  Identities=24%  Similarity=0.349  Sum_probs=94.0

Q ss_pred             CCCcccccccccccCCHHHHHHHHhhhccCCCCC--ccccCccccCChhhhhhhc---CCCcccCCCCCcccCCc-----
Q 019380           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP--KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRG-----   80 (342)
Q Consensus        11 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~--~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~~-----   80 (342)
                      ..-.|+|+.|||++++.++|.+|+.+|--...+.  .|++|+|.+.+...|+.|.   +-+..|.+|||.|++..     
T Consensus       127 ~~~r~~c~eCgk~ysT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWLLQGH  206 (279)
T KOG2462|consen  127 KHPRYKCPECGKSYSTSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWLLQGH  206 (279)
T ss_pred             cCCceeccccccccccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHHhhcc
Confidence            4557999999999999999999999932223343  8999999999999999998   34788999999999753     


Q ss_pred             -----------ccccccccCChhhHHHHHhhcCCCCCCCCcccccccc
Q 019380           81 -----------CNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDE  117 (342)
Q Consensus        81 -----------C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~~  117 (342)
                                 |++|+|.|.++++||-||++|.+.++++|..|+++..
T Consensus       207 iRTHTGEKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFs  254 (279)
T KOG2462|consen  207 IRTHTGEKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFA  254 (279)
T ss_pred             cccccCCCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHH
Confidence                       9999999999999999999999999999999998754

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=99.61  E-value=8.3e-16  Score=151.71  Aligned_cols=160  Identities=27%  Similarity=0.447  Sum_probs=134.3

Q ss_pred             Ccceeccccccccc-------CCCc--------ccccceEEeecCCCC----eEEeeecCCCCCccccccccCCCCHhhh
Q 019380          124 PKAVAMDCEMVGGG-------SNGT--------LDLCARVCLVDEDEN----VIFHTYVQPQLPVTNYRYEVTGLTEEDI  184 (342)
Q Consensus       124 ~~~v~~D~Ettg~~-------~~~~--------~~il~~v~vv~~~~~----~~~~~lv~p~~~i~~~~~~i~GIt~e~l  184 (342)
                      ...|++|.|+..+.       .++.        ..+ +++.+|+++|.    +..+.+|...+.|.+|.|+++||.+.||
T Consensus       910 g~LVgiDAEFVtLq~Ee~Eir~DG~~stIkP~~msv-ARiScvRGeGp~eGiPFiDDYv~T~d~VvDYLTqySGI~PGDL  988 (1118)
T KOG1275|consen  910 GDLVGIDAEFVTLQTEELEIRSDGKTSTIKPSRMSV-ARISCVRGEGPNEGIPFIDDYVSTDDKVVDYLTQYSGIKPGDL  988 (1118)
T ss_pred             CceeeeehhheecchHHhccccCCceeEecccccee-EEEEEEcccCCCCCCccccceecchhHHHHHHHHhcCCCcccc
Confidence            45788888887543       2222        234 89999988632    2459999999999999999999999999


Q ss_pred             cCC------CChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccccCCCcceeeccccccccccCCCCc
Q 019380          185 KNA------MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSH  258 (342)
Q Consensus       185 ~~~------~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~~~~  258 (342)
                      +..      .++.-++.++.-.+             +.|.+.|||++.+|+..+++.+|..+++||+.|+....  ....
T Consensus       989 Dp~~S~K~Lt~lK~~Y~Kl~~Li-------------~~GviFVGHGL~nDFrvINi~Vp~~QiiDTv~lf~~~s--~R~L 1053 (1118)
T KOG1275|consen  989 DPTTSEKRLTTLKVLYLKLRLLI-------------QRGVIFVGHGLQNDFRVINIHVPEEQIIDTVTLFRLGS--QRML 1053 (1118)
T ss_pred             CCccCcceehhHHHHHHHHHHHH-------------HcCcEEEcccccccceEEEEecChhhheeeeEEEeccc--ccEE
Confidence            854      25677777777776             48899999999999999999999999999999987764  4679


Q ss_pred             cHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          259 SLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       259 ~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      ||+.||..+||-+||.++|++++||+.++.||+++++-.++
T Consensus      1054 SLrfLa~~lLg~~IQ~~~HDSIeDA~taLkLYk~Yl~lkeq 1094 (1118)
T KOG1275|consen 1054 SLRFLAWELLGETIQMEAHDSIEDARTALKLYKKYLKLKEQ 1094 (1118)
T ss_pred             EHHHHHHHHhcchhhccccccHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999887655

>COG5018 KapD Inhibitor of the KinA pathway to sporulation, predicted exonuclease [General function prediction only]

Probab=99.46  E-value=1.8e-14  Score=116.52  Aligned_cols=164  Identities=20%  Similarity=0.253  Sum_probs=125.5

Q ss_pred             Ccceecccccccc---c---CCCcccccceEEeecC-CCCe--EEeeecCCCC--CccccccccCCCCHhhhcCCCChHH
Q 019380          124 PKAVAMDCEMVGG---G---SNGTLDLCARVCLVDE-DENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKE  192 (342)
Q Consensus       124 ~~~v~~D~Ettg~---~---~~~~~~il~~v~vv~~-~~~~--~~~~lv~p~~--~i~~~~~~i~GIt~e~l~~~~~~~~  192 (342)
                      ..++++|.|.|-.   .   ...+++| . ..+|+. +..+  .|++||+|..  .+..++..++||++..|+.||-|..
T Consensus         4 ~~lLIID~EaT~~eG~~~~~e~eiiei-~-a~lv~~id~~vvd~F~syVRP~~~P~Lt~~Ckslt~I~Q~~VD~apifs~   81 (210)
T COG5018           4 NSLLIIDFEATMPEGKYSPQEFEIIEI-E-AGLVKSIDDEVVDTFSSYVRPKKFPKLTKRCKSLTKITQKQVDEAPIFSM   81 (210)
T ss_pred             ceEEEEEeeeeccCCCCCchhceeeee-h-hhHHHHhhHHHHHHHHHhcCcccCchHHHHHHHhhhhhhhhccccchHHH
Confidence            4578899999842   2   2234444 2 233333 3333  4999999984  5778999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc------CCC---cceeeccccccccccCCCCccHHHH
Q 019380          193 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN------YPD---HMLRDTAKYRPLMKTNLVSHSLKYL  263 (342)
Q Consensus       193 v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~------~~~---~~~~Dt~~l~~~~~~~~~~~~L~~l  263 (342)
                      |+++|.-||+.|..        ..+..++.++ +.|+..|...      .|.   .+++|....+...+..+.-.+|..+
T Consensus        82 v~E~f~r~L~~h~P--------r~~~~wa~wG-~~Dm~~l~q~~~~~~~~p~~~kgp~vdl~~~yk~v~~~pr~tgln~a  152 (210)
T COG5018          82 VFEDFIRKLNEHDP--------RKNSTWATWG-NMDMKVLKQNCMFNHIPPFPFKGPMVDLSLEYKNVFGDPRLTGLNKA  152 (210)
T ss_pred             HHHHHHHHHHhcCc--------ccCCcccccc-chhHHHHHHHHHhcCCCCccccCccchHHHHHHHHhcCCccccHHHH
Confidence            99999999988864        2333344444 6788888711      111   7789999888888887777899999


Q ss_pred             HHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          264 TRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       264 ~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      ++.+ |..+++.+|+|++||+.+++|+..+......
T Consensus       153 le~~-G~sf~G~~HraldDArn~~rl~klv~~~~~~  187 (210)
T COG5018         153 LEEY-GDSFTGTHHRALDDARNAYRLFKLVEQDKQY  187 (210)
T ss_pred             HHHh-ccccCCchhhhHHHHHHHHHHHHHHcchhhh
Confidence            9999 9999999999999999999999999877655

>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]

Probab=99.43  E-value=7.7e-14  Score=121.92  Aligned_cols=87  Identities=31%  Similarity=0.563  Sum_probs=72.0

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCc-----
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRG-----   80 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~-----   80 (342)
                      .+.+.|+.|+|.|..-.+|..|.++  |+  .+ +|.+|||.|.+.+-|..|+     ++||.|+.|+|+|.+++     
T Consensus       159 ~ka~~C~~C~K~YvSmpALkMHirT--H~--l~c~C~iCGKaFSRPWLLQGHiRTHTGEKPF~C~hC~kAFADRSNLRAH  234 (279)
T KOG2462|consen  159 KKAFSCKYCGKVYVSMPALKMHIRT--HT--LPCECGICGKAFSRPWLLQGHIRTHTGEKPFSCPHCGKAFADRSNLRAH  234 (279)
T ss_pred             cccccCCCCCceeeehHHHhhHhhc--cC--CCcccccccccccchHHhhcccccccCCCCccCCcccchhcchHHHHHH
Confidence            5678888888888888888888888  66  33 7888888888888887777     56888888888888764     


Q ss_pred             -----------ccccccccCChhhHHHHHhhcC
Q 019380           81 -----------CNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        81 -----------C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                                 |+.|+|+|...+-|.+|.....
T Consensus       235 mQTHS~~K~~qC~~C~KsFsl~SyLnKH~ES~C  267 (279)
T KOG2462|consen  235 MQTHSDVKKHQCPRCGKSFALKSYLNKHSESAC  267 (279)
T ss_pred             HHhhcCCccccCcchhhHHHHHHHHHHhhhhcc
Confidence                       9999999999999999986544

>KOG0542 consensus Predicted exonuclease [Replication, recombination and repair]

Probab=99.40  E-value=3.1e-13  Score=116.50  Aligned_cols=167  Identities=17%  Similarity=0.275  Sum_probs=125.9

Q ss_pred             cceeccccccccc------CCCcccccceEEeecC-CCCe--EEeeecCCCC--CccccccccCCCCHhhhcCCCChHHH
Q 019380          125 KAVAMDCEMVGGG------SNGTLDLCARVCLVDE-DENV--IFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEV  193 (342)
Q Consensus       125 ~~v~~D~Ettg~~------~~~~~~il~~v~vv~~-~~~~--~~~~lv~p~~--~i~~~~~~i~GIt~e~l~~~~~~~~v  193 (342)
                      =++++|.|+|--.      ..+++|. ..|.+.+. .+.+  .|++||+|..  .+.++.+.+|||.++.|+.||+|.+|
T Consensus        57 YLliiDFEaTC~e~~~~~~~~EIIEf-P~V~l~~~~~~~Ie~eF~qYVrP~~np~LS~fC~~lTgI~Q~tVD~a~~f~~v  135 (280)
T KOG0542|consen   57 YLLILDFEATCEEGNKPHYVQEIIEF-PAVLLDNTETSIIEDEFHQYVRPVENPRLSDFCTSLTGIQQETVDEAPTFPQV  135 (280)
T ss_pred             eEEEEeeeeeccccCCCCcchheeec-ceeEeeccchhhHHHHHHhhcCcccCchHHHHHHHhhCchHhhhccCCCHHHH
Confidence            3678999998532      3456666 45534333 4444  4999999974  57899999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhh-hcc-------ccCCC--cceeeccccccccccCCCCccHHHH
Q 019380          194 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLR-------MNYPD--HMLRDTAKYRPLMKTNLVSHSLKYL  263 (342)
Q Consensus       194 ~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~-~l~-------~~~~~--~~~~Dt~~l~~~~~~~~~~~~L~~l  263 (342)
                      +.+|..||......     ...++--+|..+- -|+. ||.       +..|.  +++||.-..++..+..+..-++..+
T Consensus       136 l~~f~~Wlr~~~~~-----~k~~~~Afvtdg~-wDl~~~l~~qck~~~i~~P~~f~qwInirk~yk~~y~~~~~t~it~m  209 (280)
T KOG0542|consen  136 LSEFDSWLRKDSLG-----DKNGKFAFVTDGD-WDLWVFLQYQCKLKNIRIPAFFNQWINIRKIYKNFYNRPAPTNITGM  209 (280)
T ss_pred             HHHHHHHHHHhhcc-----cccCceEEEeCch-hhHHHHHHHHHHHhcCCCcHHHHHHhHHHHHHHHHhcCccccCHHHH
Confidence            99999999655331     0013445555542 3333 333       55554  7889998888877666567889999


Q ss_pred             HHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          264 TRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       264 ~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      .+++ |+.+.+.+|++++||+.+++|..++.+.+.+
T Consensus       210 Le~~-gL~f~Gr~HsGiDDa~Nia~I~~kM~~dg~~  244 (280)
T KOG0542|consen  210 LEHY-GLQFEGRAHSGIDDARNIARIAQKMIRDGAE  244 (280)
T ss_pred             HHHh-CCcccCCcccCchhHHHHHHHHHHHHhCCcE
Confidence            9999 9999988999999999999999999998765

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.14  E-value=4.1e-11  Score=118.23  Aligned_cols=37  Identities=22%  Similarity=0.321  Sum_probs=34.5

Q ss_pred             ccccccccCChhhHHHHHhhcCCCCCCCCcccccccc
Q 019380           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDE  117 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~~  117 (342)
                      |..||+.|...+.|..|+++|.+++|+.|..|+....
T Consensus       882 C~vCgk~FsSSsALqiH~rTHtg~KPF~C~fC~~aFt  918 (958)
T KOG1074|consen  882 CNVCGKQFSSSAALEIHMRTHTGPKPFFCHFCEEAFT  918 (958)
T ss_pred             hccchhcccchHHHHHhhhcCCCCCCccchhhhhhhh
Confidence            9999999999999999999999999999999876643

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=99.04  E-value=6.7e-11  Score=98.72  Aligned_cols=98  Identities=23%  Similarity=0.330  Sum_probs=77.5

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCcc
Q 019380            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGC   81 (342)
Q Consensus         8 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C   81 (342)
                      ++++.-.|.|..|+|.|.-...|++|++-  |+..+. -|.-||+.|...-.|++|+     .+||.|            
T Consensus       111 sssd~d~ftCrvCgK~F~lQRmlnrh~kc--h~~vkr~lct~cgkgfndtfdlkrh~rthtgvrpykc------------  176 (267)
T KOG3576|consen  111 SSSDQDSFTCRVCGKKFGLQRMLNRHLKC--HSDVKRHLCTFCGKGFNDTFDLKRHTRTHTGVRPYKC------------  176 (267)
T ss_pred             CCCCCCeeeeehhhhhhhHHHHHHHHhhh--ccHHHHHHHhhccCcccchhhhhhhhccccCccccch------------
Confidence            45567789999999999999999999999  887766 8999999999999999998     346655            


Q ss_pred             cccccccCChhhHHHHHhhcCC-----------CCCCCCcccccccccc
Q 019380           82 NLCMNIFDSPSSLIKHKEACSL-----------SAPVPFKISGAIDEKR  119 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~~~h~~-----------~~~~~~~~c~~~~~~~  119 (342)
                      ..|+|+|+++.+|..|.+.-||           .+.+.|+.||.+...+
T Consensus       177 ~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg~t~~~~  225 (267)
T KOG3576|consen  177 SLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCGYTSERP  225 (267)
T ss_pred             hhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccCCCCCCh
Confidence            6677777777777777765443           3455677777776644

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=99.01  E-value=1.3e-10  Score=113.08  Aligned_cols=104  Identities=21%  Similarity=0.295  Sum_probs=84.7

Q ss_pred             cccccccccccCCHHHHHHHHhhhccCCCCC--ccccCccccCChhhhhhhcCCCccc---------CCCCCcccCCccc
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP--KCAVCQKLSKSFESLREHLTGPLSK---------AHCSGIFSDRGCN   82 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~--~C~~C~~~f~~~~~l~~H~~~~~~C---------~~C~k~f~~~~C~   82 (342)
                      ...|+.|.+++.+-..|+.|.+.. |....+  .|..|.+.|.....|.+|+.-..+|         ..|.+.|   +|+
T Consensus       210 lltcpycdrgykrltslkeHikyr-hekne~nfsC~lCsytFAyRtQLErhm~~hkpg~dqa~sltqsa~lRKF---KCt  285 (1007)
T KOG3623|consen  210 LLTCPYCDRGYKRLTSLKEHIKYR-HEKNEPNFSCMLCSYTFAYRTQLERHMQLHKPGGDQAISLTQSALLRKF---KCT  285 (1007)
T ss_pred             hhcchhHHHHHHHHHHHHHHHHHH-HhhCCCCCcchhhhhhhhhHHHHHHHHHhhcCCCcccccccchhhhccc---ccc
Confidence            356999999999999999999864 443333  8999999999999999999333333         2233333   699


Q ss_pred             ccccccCChhhHHHHHhhcCCCCCCCCcccccccccccC
Q 019380           83 LCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDEKRTC  121 (342)
Q Consensus        83 ~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~~~~~~  121 (342)
                      +|||.|+.+.+|+.|.|+|.|++||.|+.|++.....+.
T Consensus       286 ECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFSHSGS  324 (1007)
T KOG3623|consen  286 ECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFSHSGS  324 (1007)
T ss_pred             ccchhhhhHHHHHhhheeecCCCCcCCcccccccccCCc
Confidence            999999999999999999999999999999988765554

>KOG1074 consensus Transcriptional repressor SALM [Transcription]

Probab=99.01  E-value=2e-10  Score=113.52  Aligned_cols=48  Identities=31%  Similarity=0.642  Sum_probs=46.2

Q ss_pred             cccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (342)
                      +++|..|.|.|...+.|+.|.+.  ||+++| +|.+||..|.++.+|+.|.
T Consensus       353 khkCr~CakvfgS~SaLqiHlRS--HTGERPfqCnvCG~~FSTkGNLKvH~  401 (958)
T KOG1074|consen  353 KHKCRFCAKVFGSDSALQIHLRS--HTGERPFQCNVCGNRFSTKGNLKVHF  401 (958)
T ss_pred             cchhhhhHhhcCchhhhhhhhhc--cCCCCCeeecccccccccccceeeee
Confidence            47899999999999999999999  999999 9999999999999999997

>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]

Probab=98.98  E-value=1.9e-10  Score=111.91  Aligned_cols=81  Identities=28%  Similarity=0.534  Sum_probs=70.1

Q ss_pred             CCCCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc---CCCcccCCCCCcccCCccc
Q 019380            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCN   82 (342)
Q Consensus         7 ~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~~C~   82 (342)
                      +-.+++.+|.|+.|+|.|...+.|.+|.-.  |+|++| +|.+|.|.|+.+..|..|+   .|.+++          .|.
T Consensus       887 ~~kte~gmyaCDqCDK~FqKqSSLaRHKYE--HsGqRPyqC~iCkKAFKHKHHLtEHkRLHSGEKPf----------QCd  954 (1007)
T KOG3623|consen  887 HAKTEDGMYACDQCDKAFQKQSSLARHKYE--HSGQRPYQCIICKKAFKHKHHLTEHKRLHSGEKPF----------QCD  954 (1007)
T ss_pred             cccCccccchHHHHHHHHHhhHHHHHhhhh--hcCCCCcccchhhHhhhhhhhhhhhhhhccCCCcc----------hhh
Confidence            445788999999999999999999999999  999999 9999999999999999998   343333          357


Q ss_pred             ccccccCChhhHHHHHh
Q 019380           83 LCMNIFDSPSSLIKHKE   99 (342)
Q Consensus        83 ~C~k~F~~~~~L~~H~~   99 (342)
                      .|+|.|+.+.++..||.
T Consensus       955 KClKRFSHSGSYSQHMN  971 (1007)
T KOG3623|consen  955 KCLKRFSHSGSYSQHMN  971 (1007)
T ss_pred             hhhhhcccccchHhhhc
Confidence            78888888888888883

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=98.98  E-value=1.7e-10  Score=103.82  Aligned_cols=103  Identities=28%  Similarity=0.444  Sum_probs=90.3

Q ss_pred             CCCc-ccc--cccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc-------CCCcccCCCCCcccCC
Q 019380           11 STAR-HKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-------TGPLSKAHCSGIFSDR   79 (342)
Q Consensus        11 ~~~~-~~C--~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-------~~~~~C~~C~k~f~~~   79 (342)
                      .+|| +.|  ..|-+.|..++.|.+|.+.  |++++- .|+.||..|+++..|-.|.       ..+|.|..|.|+|...
T Consensus       173 D~~pv~~C~W~~Ct~~~~~k~~LreH~r~--Hs~eKvvACp~Cg~~F~~~tkl~DH~rRqt~l~~n~fqC~~C~KrFaTe  250 (467)
T KOG3608|consen  173 DERPVTMCNWAMCTKHMGNKYRLREHIRT--HSNEKVVACPHCGELFRTKTKLFDHLRRQTELNTNSFQCAQCFKRFATE  250 (467)
T ss_pred             CCCceeeccchhhhhhhccHHHHHHHHHh--cCCCeEEecchHHHHhccccHHHHHHHhhhhhcCCchHHHHHHHHHhHH
Confidence            4444 677  6799999999999999999  999998 9999999999999999997       5689999999999875


Q ss_pred             c--------------ccccccccCChhhHHHHHh-hcCCCCCCCCcccccc
Q 019380           80 G--------------CNLCMNIFDSPSSLIKHKE-ACSLSAPVPFKISGAI  115 (342)
Q Consensus        80 ~--------------C~~C~k~F~~~~~L~~H~~-~h~~~~~~~~~~c~~~  115 (342)
                      .              |+.|+-+...+++|++|++ .|...+|++|+.|...
T Consensus       251 klL~~Hv~rHvn~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~  301 (467)
T KOG3608|consen  251 KLLKSHVVRHVNCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTR  301 (467)
T ss_pred             HHHHHHHHHhhhcccccccccCCCChHHHHHHHHhhhccCCCccccchhhh
Confidence            3              9999999999999999998 5777889888876543

>COG1949 Orn Oligoribonuclease (3'-5' exoribonuclease) [RNA processing and modification]

Probab=98.96  E-value=7.6e-10  Score=89.53  Aligned_cols=153  Identities=18%  Similarity=0.287  Sum_probs=107.3

Q ss_pred             CCCcceeccccccccc--CCCcccccceEEeecCCCCeEE---eeecCCCC----Ccccccccc---CCCCHhhhcCCCC
Q 019380          122 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVIF---HTYVQPQL----PVTNYRYEV---TGLTEEDIKNAMP  189 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~~~---~~lv~p~~----~i~~~~~~i---~GIt~e~l~~~~~  189 (342)
                      ...+.|-+||||||++  .+.++|+  +..|.|.+-.++-   ...|....    .+.+++++-   +|+++.-.+...+
T Consensus         4 ~~~nLiWIDlEMTGLd~~~drIIEi--A~iVTD~~Lnilaegp~~~Ihq~~e~L~~Mdew~~~~H~~sGL~~rV~~S~~t   81 (184)
T COG1949           4 NKNNLIWIDLEMTGLDPERDRIIEI--ATIVTDANLNILAEGPVIAIHQSDEQLAKMDEWNTETHGRSGLTERVKASTVT   81 (184)
T ss_pred             cCCceEEEeeeeccCCcCcceEEEE--EEEEecCcccccccCceEEEeCCHHHHHHHHHHHHHccccccHHHHHHHhhcc
Confidence            4567899999999998  4455655  5555566666642   33333332    344555544   5777777777889


Q ss_pred             hHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccccCCC------cceeeccccccccccCCCCccHHHH
Q 019380          190 LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD------HMLRDTAKYRPLMKTNLVSHSLKYL  263 (342)
Q Consensus       190 ~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~------~~~~Dt~~l~~~~~~~~~~~~L~~l  263 (342)
                      ..+|..++++||....        +.+-.+++|..+.-|..||...+|.      .+.+|++             +|++|
T Consensus        82 ~~~aE~~~l~flkkwv--------p~~~spicGNSI~qDRrFl~r~MP~Le~yfHYR~lDVS-------------TlKEL  140 (184)
T COG1949          82 EAEAEAQTLDFLKKWV--------PKGVSPICGNSIAQDRRFLFRYMPKLEAYFHYRYLDVS-------------TLKEL  140 (184)
T ss_pred             HHHHHHHHHHHHHHhC--------CCCCCCCccchhhHHHHHHHHHhhhHHHHhhhHhhhHH-------------HHHHH
Confidence            9999999999995432        2366899999999999999977775      3445554             35555


Q ss_pred             HHHH-----hCCcCCCCCCCcHHHHHHHHHHHHHHHhhhh
Q 019380          264 TRTY-----LGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       264 ~~~~-----~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~  298 (342)
                      |++.     .|.. .++.|+|++|.+-...=+..+++.+-
T Consensus       141 a~RW~P~i~~~~~-K~~~H~Al~DI~ESI~EL~~YR~~f~  179 (184)
T COG1949         141 ARRWNPEILAGFK-KGGTHRALDDIRESIAELRYYREHFL  179 (184)
T ss_pred             HHhhCcHhhhccc-cccchhHHHHHHHHHHHHHHHHHHhc
Confidence            5443     2433 56699999999999998888888763

>KOG3242 consensus Oligoribonuclease (3'->5' exoribonuclease) [RNA processing and modification]

Probab=98.94  E-value=1.3e-09  Score=89.03  Aligned_cols=155  Identities=17%  Similarity=0.253  Sum_probs=109.0

Q ss_pred             CCCcceeccccccccc--CCCcccccceEEeecCCCCeE---EeeecCCCCCcc----cccccc---CCCCHhhhcCCCC
Q 019380          122 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVI---FHTYVQPQLPVT----NYRYEV---TGLTEEDIKNAMP  189 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~~---~~~lv~p~~~i~----~~~~~i---~GIt~e~l~~~~~  189 (342)
                      -..++|.+||||||++  .+.++|+  +..|.|++-.++   ++..|+.+.++.    ++...-   +|+|..-++...+
T Consensus        24 l~q~lVWiD~EMTGLdvekd~i~Ei--acIITD~dL~~~~egpd~vI~~~~evld~MneWc~ehhg~SGLt~kv~~S~~t  101 (208)
T KOG3242|consen   24 LKQPLVWIDCEMTGLDVEKDRIIEI--ACIITDGDLNPVAEGPDLVIHQPKEVLDKMNEWCIEHHGNSGLTEKVLASKIT  101 (208)
T ss_pred             ccCceEEEeeeccccccccceeEEE--EEEEecCCccccccCccchhcCCHHHHHHHHHHHHHhccchhHHHHHHHhhcc
Confidence            4567999999999987  6667766  555556655553   677777664433    344433   5788888889999


Q ss_pred             hHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccccCCC------cceeeccc---cccccccCCCCccH
Q 019380          190 LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPD------HMLRDTAK---YRPLMKTNLVSHSL  260 (342)
Q Consensus       190 ~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~------~~~~Dt~~---l~~~~~~~~~~~~L  260 (342)
                      +++|..++++||.-+      .+  .+..+|.|..+..|..||...+|.      .+++|+..   |+++++|....   
T Consensus       102 l~~aEnevl~yikk~------ip--~~~~~laGNSV~~DrlFl~k~mPk~~~~lhyrivDVStIkeL~~Rw~P~~~~---  170 (208)
T KOG3242|consen  102 LADAENEVLEYIKKH------IP--KGKCPLAGNSVYMDRLFLKKYMPKLIKHLHYRIVDVSTIKELARRWYPDIKA---  170 (208)
T ss_pred             HHHHHHHHHHHHHHh------CC--CCCCCccCcchhhHHHHHHHHhHHHHHhcceeeeeHHHHHHHHHHhCchhhc---
Confidence            999999999999433      22  366789999999999999966553      66777764   44444443110   


Q ss_pred             HHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhh
Q 019380          261 KYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       261 ~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                            +  -+-....|||++|.+-...-++.+++.+
T Consensus       171 ------~--aPkK~~~HrAldDI~ESI~ELq~Yr~ni  199 (208)
T KOG3242|consen  171 ------R--APKKKATHRALDDIRESIKELQYYRENI  199 (208)
T ss_pred             ------c--CcccccccchHHHHHHHHHHHHHHHHHh
Confidence                  1  1112348999999999999888888776

>COG2925 SbcB Exonuclease I [DNA replication, recombination, and repair]

Probab=98.84  E-value=1.2e-08  Score=93.37  Aligned_cols=171  Identities=18%  Similarity=0.220  Sum_probs=119.9

Q ss_pred             CCCCcceecccccccccCC--CcccccceEEeecCCCCe---EEeeecCCCCCc--cccccccCCCCHhhhc-CCCChHH
Q 019380          121 CRGPKAVAMDCEMVGGGSN--GTLDLCARVCLVDEDENV---IFHTYVQPQLPV--TNYRYEVTGLTEEDIK-NAMPLKE  192 (342)
Q Consensus       121 ~~~~~~v~~D~Ettg~~~~--~~~~il~~v~vv~~~~~~---~~~~lv~p~~~i--~~~~~~i~GIt~e~l~-~~~~~~~  192 (342)
                      .....|..+|-||.|..+.  +..+. +.+.- |.+-.+   ...-|++|....  .+.+.-|||||++... ++.+..+
T Consensus         6 ~~~~tF~~yDYETfG~~Pa~DRPaQF-AgiRT-D~~~NiIgeP~~fyCkpsdDyLP~P~a~LITGITPQ~~~~~G~~E~~   83 (475)
T COG2925           6 TKQPTFLFYDYETFGVHPALDRPAQF-AGIRT-DIEFNIIGEPIVFYCKPADDYLPQPGAVLITGITPQEAREKGINEAA   83 (475)
T ss_pred             CCCCcEEEEehhhcCCCcccccchhh-heeec-cccccccCCCeEEEecCccccCCCCCceeeecCCHHHHHhcCCChHH
Confidence            3455688999999998743  33333 33332 223333   367788887543  2567899999998875 6788888


Q ss_pred             HHHHHHHHHhcCCCccccccCCCCCeEEEeeC-chhhhhhcccc------------CCC----cceeecccccccccc--
Q 019380          193 VKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRMN------------YPD----HMLRDTAKYRPLMKT--  253 (342)
Q Consensus       193 v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~~~------------~~~----~~~~Dt~~l~~~~~~--  253 (342)
                      ...+|..-+            .-.++.++|+| ++||=.+-+..            +..    ..++|.+...-.+.|  
T Consensus        84 F~~~I~~~l------------s~P~Tcv~GYNniRFDDEvtRy~fyRNF~DPYa~sWqngNSRWDLLD~~RacyALRPeG  151 (475)
T COG2925          84 FAARIHAEL------------TQPNTCVLGYNNIRFDDEVTRYIFYRNFYDPYAWSWQNGNSRWDLLDVVRACYALRPEG  151 (475)
T ss_pred             HHHHHHHHh------------CCCCeeeecccccccchHHHHHHHHHhcCchhhhhhcCCCchhHHHHHHHHHHhcCccc
Confidence            888888887            23789999986 88887776611            111    223444432222222  


Q ss_pred             --------CCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhhhhhhccCC
Q 019380          254 --------NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQN  307 (342)
Q Consensus       254 --------~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~~~~~~~~~  307 (342)
                              +..+.+|+.|...- |+. .+++|+|++|++||..+.+.++.+-..++++-++.
T Consensus       152 I~Wp~n~dG~pSFkLEhLt~AN-gie-H~nAHdAmsDVyATIamAklvk~~QPrLfdy~f~~  211 (475)
T COG2925         152 INWPENDDGLPSFKLEHLTKAN-GIE-HSNAHDAMSDVYATIAMAKLVKTAQPRLFDYLFQL  211 (475)
T ss_pred             CCCCcCCCCCcchhhHHHhhcc-ccc-cchhhHHHHHHHHHHHHHHHHHhhCcHHHHHHHHh
Confidence                    44578899999988 888 77799999999999999999998888888886644

>PHA02768 hypothetical protein; Provisional

Probab=98.67  E-value=1.3e-08  Score=67.67  Aligned_cols=44  Identities=18%  Similarity=0.435  Sum_probs=38.4

Q ss_pred             cccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhh
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLR   60 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~   60 (342)
                      -|+|+.||+.|++..+|..|+++  |+ ..++|..|++.|...+.|.
T Consensus         5 ~y~C~~CGK~Fs~~~~L~~H~r~--H~-k~~kc~~C~k~f~~~s~l~   48 (55)
T PHA02768          5 GYECPICGEIYIKRKSMITHLRK--HN-TNLKLSNCKRISLRTGEYI   48 (55)
T ss_pred             ccCcchhCCeeccHHHHHHHHHh--cC-CcccCCcccceecccceeE
Confidence            58999999999999999999999  87 3338999999999887764

>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases

Probab=98.66  E-value=6.9e-08  Score=83.89  Aligned_cols=124  Identities=15%  Similarity=0.151  Sum_probs=84.6

Q ss_pred             ceecccccccc----c--CCCcccccceEEeecC-CCCeE-EeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHH
Q 019380          126 AVAMDCEMVGG----G--SNGTLDLCARVCLVDE-DENVI-FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  197 (342)
Q Consensus       126 ~v~~D~Ettg~----~--~~~~~~il~~v~vv~~-~~~~~-~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~  197 (342)
                      .++||.||+|.    +  .+.+    ..++++.. +|... +.....+......      ||+..++...++..+++.+|
T Consensus         1 v~~~DIEt~~~~~~p~~~~d~I----i~I~~~~~~~g~~~~~~~~~~~~~~~~~------~i~~~~v~~~~~E~~lL~~f   70 (199)
T cd05160           1 VLSFDIETTPPVGGPEPDRDPI----ICITYADSFDGVKVVFLLKTSTVGDDIE------FIDGIEVEYFADEKELLKRF   70 (199)
T ss_pred             CccEEEeecCCCCCcCCCCCCE----EEEEEEEeeCCceeeEEEeecccCCcCC------CCCCceEEEeCCHHHHHHHH
Confidence            36799999986    2  2333    34444433 55543 3222222211111      88888999999999999999


Q ss_pred             HHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-------ccCC----------------------Ccceeecccc
Q 019380          198 LEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNYP----------------------DHMLRDTAKY  247 (342)
Q Consensus       198 ~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~~----------------------~~~~~Dt~~l  247 (342)
                      .+++.+.           ...+|||||+ .||+.+|.       +...                      -..++|+..+
T Consensus        71 ~~~i~~~-----------dpdiivg~N~~~FD~~~L~~R~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~gr~~~D~~~~  139 (199)
T cd05160          71 FDIIREY-----------DPDILTGYNIDDFDLPYLLKRAEALGIKLTDGIYRRSGGEKSSGSTERIAVKGRVVFDLLAA  139 (199)
T ss_pred             HHHHHhc-----------CCCEEEEeccCCCcHHHHHHHHHHhCCCcccccccccCCCccCCcccceeeeccEeeehHHH
Confidence            9999321           1249999999 89999988       1120                      1246888888


Q ss_pred             ccccccCCCCccHHHHHHHHhCCc
Q 019380          248 RPLMKTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       248 ~~~~~~~~~~~~L~~l~~~~~~~~  271 (342)
                      .+...+ ..+|+|+.+|+.++|..
T Consensus       140 ~r~~~~-l~sy~L~~v~~~~l~~~  162 (199)
T cd05160         140 YKRDFK-LKSYTLDAVAEELLGEG  162 (199)
T ss_pred             HHHhcC-cccCCHHHHHHHHhCCC
Confidence            877665 67899999999997765

The 3'-5' exonuclease domain of family-B DNA polymerases. This domain has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The exonuclease domain of family B polymerase also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members include Escherichia coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative

>KOG3608 consensus Zn finger proteins [General function prediction only]

Probab=98.63  E-value=1.2e-08  Score=92.05  Aligned_cols=102  Identities=21%  Similarity=0.397  Sum_probs=75.1

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhc------CCCcccCCCCCcccCCc-----
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHL------TGPLSKAHCSGIFSDRG-----   80 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~------~~~~~C~~C~k~f~~~~-----   80 (342)
                      .-+|.|..|.|.|.++..|..|+..  |- .-++|+.|.......++|.+|+      .++|+|+.|+++|.+.+     
T Consensus       235 ~n~fqC~~C~KrFaTeklL~~Hv~r--Hv-n~ykCplCdmtc~~~ssL~~H~r~rHs~dkpfKCd~Cd~~c~~esdL~kH  311 (467)
T KOG3608|consen  235 TNSFQCAQCFKRFATEKLLKSHVVR--HV-NCYKCPLCDMTCSSASSLTTHIRYRHSKDKPFKCDECDTRCVRESDLAKH  311 (467)
T ss_pred             CCchHHHHHHHHHhHHHHHHHHHHH--hh-hcccccccccCCCChHHHHHHHHhhhccCCCccccchhhhhccHHHHHHH
Confidence            3478888888888888888888877  43 2347888888888888888887      56888888888887643     


Q ss_pred             ----------ccc--cccccCChhhHHHHHhhcC-CCCC--CCCccccccc
Q 019380           81 ----------CNL--CMNIFDSPSSLIKHKEACS-LSAP--VPFKISGAID  116 (342)
Q Consensus        81 ----------C~~--C~k~F~~~~~L~~H~~~h~-~~~~--~~~~~c~~~~  116 (342)
                                |+.  |..+|++...+++|++.++ |.+|  |.|-.|.+..
T Consensus       312 ~~~HS~~~y~C~h~~C~~s~r~~~q~~~H~~evhEg~np~~Y~CH~Cdr~f  362 (467)
T KOG3608|consen  312 VQVHSKTVYQCEHPDCHYSVRTYTQMRRHFLEVHEGNNPILYACHCCDRFF  362 (467)
T ss_pred             HHhccccceecCCCCCcHHHHHHHHHHHHHHHhccCCCCCceeeecchhhh
Confidence                      766  8888888888888887655 4444  4566655443

>PHA00733 hypothetical protein

Probab=98.59  E-value=4.2e-08  Score=78.68  Aligned_cols=83  Identities=19%  Similarity=0.215  Sum_probs=64.9

Q ss_pred             CCCcccccccccccCCHHHHHHH--Hhh--hccCCCCC-ccccCccccCChhhhhhhcCC-CcccCCCCCcccCCccccc
Q 019380           11 STARHKCVACYKQFKRKDHLIEH--MKI--SYHSVHQP-KCAVCQKLSKSFESLREHLTG-PLSKAHCSGIFSDRGCNLC   84 (342)
Q Consensus        11 ~~~~~~C~~C~k~f~~~~~L~~H--~~~--~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~-~~~C~~C~k~f~~~~C~~C   84 (342)
                      +.+++.|.+|.+.|..+..|..|  ++.  ..|+ .++ .|..|++.|.+..+|..|+.. ..+          ..|+.|
T Consensus        37 ~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~-~kPy~C~~Cgk~Fss~s~L~~H~r~h~~~----------~~C~~C  105 (128)
T PHA00733         37 EQKRLIRAVVKTLIYNPQLLDESSYLYKLLTSKA-VSPYVCPLCLMPFSSSVSLKQHIRYTEHS----------KVCPVC  105 (128)
T ss_pred             hhhhHHHHHHhhhccChhhhcchHHHHhhcccCC-CCCccCCCCCCcCCCHHHHHHHHhcCCcC----------ccCCCC
Confidence            68899999999999998887766  211  1134 444 999999999999999999831 111          157999


Q ss_pred             ccccCChhhHHHHHhhcCCC
Q 019380           85 MNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        85 ~k~F~~~~~L~~H~~~h~~~  104 (342)
                      ++.|....+|..|+...|+-
T Consensus       106 gK~F~~~~sL~~H~~~~h~~  125 (128)
T PHA00733        106 GKEFRNTDSTLDHVCKKHNI  125 (128)
T ss_pred             CCccCCHHHHHHHHHHhcCc
Confidence            99999999999999887753

>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases

Probab=98.58  E-value=4.8e-07  Score=77.86  Aligned_cols=146  Identities=21%  Similarity=0.210  Sum_probs=96.5

Q ss_pred             CCcceecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHh
Q 019380          123 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  202 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~  202 (342)
                      ..+++++|+|++|...... .+ ..+.+....+...+ .-+.+        +.        ..+++.+.+++..|.+++.
T Consensus         4 ~~~~~a~d~e~~~~~~~~~-~i-~~l~~~~~~~~~~~-~~~~~--------~~--------~~~~~~~~~~~~~l~~~l~   64 (193)
T cd06139           4 KAKVFAFDTETTSLDPMQA-EL-VGISFAVEPGEAYY-IPLGH--------DY--------GGEQLPREEVLAALKPLLE   64 (193)
T ss_pred             cCCeEEEEeecCCCCcCCC-eE-EEEEEEcCCCCEEE-EecCC--------Cc--------cccCCCHHHHHHHHHHHHh
Confidence            3567899999998753111 22 34445433332322 10111        00        1145678889999999992


Q ss_pred             cCCCccccccCCCCCeEEEeeCchhhhhhccccC--CCcceeeccccccccccCCCCccHHHHHHHHhCCcCCC------
Q 019380          203 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY--PDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS------  274 (342)
Q Consensus       203 ~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~--~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~------  274 (342)
                                  +.+.++|+||+.||+.+|....  ....+.||+.++..+.|....++|++++..|+|..+..      
T Consensus        65 ------------~~~~~~v~hn~k~d~~~l~~~gi~~~~~~~Dt~l~a~ll~p~~~~~~l~~l~~~~l~~~~~~~~~~~~  132 (193)
T cd06139          65 ------------DPSIKKVGQNLKFDLHVLANHGIELRGPAFDTMLASYLLNPGRRRHGLDDLAERYLGHKTISFEDLVG  132 (193)
T ss_pred             ------------CCCCcEEeeccHHHHHHHHHCCCCCCCCcccHHHHHHHhCCCCCCCCHHHHHHHHhCCCCccHHHHcC
Confidence                        2345899999999999997221  12457999999998888654579999999997754110      


Q ss_pred             ---------------CCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          275 ---------------GVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       275 ---------------~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                                     ..|.|..||.++..|+..+..+.++
T Consensus       133 k~~~~~~~~~~~~~~~~~ya~~d~~~~~~l~~~l~~~l~~  172 (193)
T cd06139         133 KGKKQITFDQVPLEKAAEYAAEDADITLRLYELLKPKLKE  172 (193)
T ss_pred             CCcCcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence                           1235788899999999999887643

Escherichia coli-like Polymerase I (Pol I), a subgroup of family-A DNA polymerases, contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase domain. The exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The 3'-5' exonuclease domain of DNA polymerases has a fundamental role in reducing polymerase errors and is involved in proofreading activity. E. coli DNA Pol I is involved in genome replication but is not the main replicating enzyme. It is also implicated in DNA repair.

>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides

Probab=98.52  E-value=7.3e-07  Score=75.37  Aligned_cols=92  Identities=29%  Similarity=0.364  Sum_probs=65.6

Q ss_pred             HHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccc--cCCCcceeeccccccccccCCCCccHHHHHHHHhC-
Q 019380          193 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM--NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLG-  269 (342)
Q Consensus       193 v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~--~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~-  269 (342)
                      +.+.|.+++            ++.+.+.||||+.||+.+|..  ......++|++.....+.+. .+++|++|+..|+| 
T Consensus        65 ~~~~l~~ll------------~~~~i~kv~~n~~~D~~~L~~~~~i~~~~~~D~~l~~~~l~~~-~~~~L~~L~~~~l~~  131 (176)
T PF01612_consen   65 ILDALKELL------------EDPNIIKVGHNAKFDLKWLYRSFGIDLKNVFDTMLAAYLLDPT-RSYSLKDLAEEYLGN  131 (176)
T ss_dssp             HHHHHHHHH------------TTTTSEEEESSHHHHHHHHHHHHTS--SSEEEHHHHHHHTTTS-TTSSHHHHHHHHHSE
T ss_pred             hHHHHHHHH------------hCCCccEEEEEEechHHHHHHHhccccCCccchhhhhhccccc-ccccHHHHHHHHhhh
Confidence            777788888            346789999999999999994  23335589995444444443 33999999999999 


Q ss_pred             CcCCCC----CC---C---------cHHHHHHHHHHHHHHHhhh
Q 019380          270 YDIQSG----VH---D---------PYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       270 ~~~~~~----~H---~---------A~~Da~~t~~l~~~~~~~~  297 (342)
                      ......    .-   +         |..||..+.+||..+..+.
T Consensus       132 ~~~~~~~~~~~~~~~~~l~~~~~~YAa~D~~~~~~l~~~l~~~l  175 (176)
T PF01612_consen  132 IDLDKKEQMSDWRKARPLSEEQIEYAAQDAVVTFRLYEKLKPQL  175 (176)
T ss_dssp             EE-GHCCTTSSTTTSSS-HHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred             ccCcHHHhhccCCcCCCChHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            333111    11   2         5569999999999998764

This domain consists of the amino-terminal half of the Klenow fragment in E. coli polI it is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D) [].; GO: 0003676 nucleic acid binding, 0008408 3'-5' exonuclease activity, 0006139 nucleobase-containing compound metabolic process, 0005622 intracellular; PDB: 2HBK_A 2HBJ_A 2HBM_A 2HBL_A 2FC0_A 2FBY_A 2FBX_A 2FBT_A 2FBV_A 1YT3_A ....

>KOG3576 consensus Ovo and related transcription factors [Transcription]

Probab=98.41  E-value=4.2e-08  Score=82.18  Aligned_cols=95  Identities=25%  Similarity=0.335  Sum_probs=73.3

Q ss_pred             CCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhcCC----CcccCCCCCcccCCcccccc
Q 019380           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTG----PLSKAHCSGIFSDRGCNLCM   85 (342)
Q Consensus        11 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~----~~~C~~C~k~f~~~~C~~C~   85 (342)
                      .-|.|.|..|||.|...-.|++|+++  |++.+| +|..|+++|...-+|..|..+    +..+-+=.++-.-.-|+.||
T Consensus       142 ~vkr~lct~cgkgfndtfdlkrh~rt--htgvrpykc~~c~kaftqrcsleshl~kvhgv~~~yaykerr~kl~vcedcg  219 (267)
T KOG3576|consen  142 DVKRHLCTFCGKGFNDTFDLKRHTRT--HTGVRPYKCSLCEKAFTQRCSLESHLKKVHGVQHQYAYKERRAKLYVCEDCG  219 (267)
T ss_pred             HHHHHHHhhccCcccchhhhhhhhcc--ccCccccchhhhhHHHHhhccHHHHHHHHcCchHHHHHHHhhhheeeecccC
Confidence            44689999999999999999999999  999999 999999999999999999721    11110000111111388999


Q ss_pred             cccCChhhHHHHHhhcCCCCCC
Q 019380           86 NIFDSPSSLIKHKEACSLSAPV  107 (342)
Q Consensus        86 k~F~~~~~L~~H~~~h~~~~~~  107 (342)
                      .+-.....+..|.+.|+...|.
T Consensus       220 ~t~~~~e~~~~h~~~~hp~Spa  241 (267)
T KOG3576|consen  220 YTSERPEVYYLHLKLHHPFSPA  241 (267)
T ss_pred             CCCCChhHHHHHHHhcCCCCHH
Confidence            8888888999999999866554

>PHA02768 hypothetical protein; Provisional

Probab=98.21  E-value=1.1e-06  Score=58.51  Aligned_cols=36  Identities=19%  Similarity=0.362  Sum_probs=31.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDE  117 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~~  117 (342)
                      .|+.||+.|+..++|..|+++|+  ++++|..|++...
T Consensus         7 ~C~~CGK~Fs~~~~L~~H~r~H~--k~~kc~~C~k~f~   42 (55)
T PHA02768          7 ECPICGEIYIKRKSMITHLRKHN--TNLKLSNCKRISL   42 (55)
T ss_pred             CcchhCCeeccHHHHHHHHHhcC--CcccCCcccceec
Confidence            58999999999999999999999  7889998887644

>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily

Probab=98.14  E-value=8.6e-06  Score=62.08  Aligned_cols=30  Identities=40%  Similarity=0.498  Sum_probs=22.8

Q ss_pred             eEEEeeCchhhhhhcccc-------CC--Ccceeecccc
Q 019380          218 RLLVGHGLEHDLDSLRMN-------YP--DHMLRDTAKY  247 (342)
Q Consensus       218 ~~lvgh~~~~D~~~l~~~-------~~--~~~~~Dt~~l  247 (342)
                      .++||||+.||+.||+..       .|  ..+++||+.+
T Consensus        45 ~v~V~hn~~fD~~fL~~~~~~~~~~~p~~~~~~lDT~~l   83 (96)
T cd06125          45 AILVGHNGSFDLPFLNNRCAELGLKYPLLAGSWIDTIKL   83 (96)
T ss_pred             CEEEEeCcHHhHHHHHHHHHHcCCCCCCcCCcEEEehHH
Confidence            699999999999998822       22  2567888866

The DnaQ-like exonuclease superfamily is a structurally conserved group of 3'-5' exonucleases, which catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. It is also called the DEDD superfamily, after the four invariant acidic residues present in the catalytic site of its members. The superfamily consists of DNA- and RNA-processing enzymes such as the proofreading domains of DNA polymerases, other DNA exonucleases, RNase D, RNase T, Oligoribonuclease and RNA exonucleases (REX). The DnaQ-like exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation patterns of the three motifs may vary among different subfamilies. DnaQ-like exonucleases are classified as DEDDy

>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins

Probab=98.14  E-value=1.7e-05  Score=68.48  Aligned_cols=81  Identities=17%  Similarity=0.323  Sum_probs=61.9

Q ss_pred             CCCeEEEeeCchhhhhhccccCC--------CcceeeccccccccccC----------CCCccHHHHHHHHhCCcCCCC-
Q 019380          215 GKARLLVGHGLEHDLDSLRMNYP--------DHMLRDTAKYRPLMKTN----------LVSHSLKYLTRTYLGYDIQSG-  275 (342)
Q Consensus       215 ~~~~~lvgh~~~~D~~~l~~~~~--------~~~~~Dt~~l~~~~~~~----------~~~~~L~~l~~~~~~~~~~~~-  275 (342)
                      +.+.+-|||++.+|+.+|...++        ...++|+..++..+...          ...+||+.|++.++|..+++. 
T Consensus        80 d~~i~KVg~~~~~D~~~L~~~~~~~~~~~~~~~~v~Dl~~~a~~l~~~~~~~~~~~~~~~~~sL~~l~~~~lg~~l~K~~  159 (193)
T cd06146          80 DPDVLKLGFGFKQDLKALSASYPALKCMFERVQNVLDLQNLAKELQKSDMGRLKGNLPSKTKGLADLVQEVLGKPLDKSE  159 (193)
T ss_pred             CCCeeEEEechHHHHHHHHHhcCccccccccCCceEEHHHHHHHHhhccccccccccCcccCCHHHHHHHHhCCCcCccc
Confidence            35567799999999999984332        24689998877654321          357899999999999888755 


Q ss_pred             --------------CCCcHHHHHHHHHHHHHHHh
Q 019380          276 --------------VHDPYEDCVSVMRLYKRFRR  295 (342)
Q Consensus       276 --------------~H~A~~Da~~t~~l~~~~~~  295 (342)
                                    -+-|..||..+..||.++.+
T Consensus       160 q~SdW~~rpLs~~Qi~YAA~Da~~l~~l~~~L~~  193 (193)
T cd06146         160 QCSNWERRPLREEQILYAALDAYCLLEVFDKLLE  193 (193)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence                          14477899999999998863

The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.

>PRK05755 DNA polymerase I; Provisional

Probab=98.13  E-value=9.7e-06  Score=85.58  Aligned_cols=137  Identities=23%  Similarity=0.241  Sum_probs=93.6

Q ss_pred             CCcceecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHh
Q 019380          123 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  202 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~  202 (342)
                      ...++++|+||+|..+.... + ..+.+...+|...+   + |.          +++.          .++++.|.+++ 
T Consensus       314 ~~~~~a~DtEt~~l~~~~~~-i-~~i~ls~~~g~~~~---i-p~----------~~i~----------~~~l~~l~~~L-  366 (880)
T PRK05755        314 AAGLFAFDTETTSLDPMQAE-L-VGLSFAVEPGEAAY---I-PL----------DQLD----------REVLAALKPLL-  366 (880)
T ss_pred             ccCeEEEEeccCCCCccccc-E-EEEEEEeCCCcEEE---E-ec----------cccc----------HHHHHHHHHHH-
Confidence            35688999999997532221 2 33333324443221   1 11          1111          16788899999 


Q ss_pred             cCCCccccccCCCCCeEEEeeCchhhhhhccc-cCC-CcceeeccccccccccCCCCccHHHHHHHHhCCcCCC------
Q 019380          203 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-NYP-DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS------  274 (342)
Q Consensus       203 ~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-~~~-~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~------  274 (342)
                                 ++...++|+||+.||+.+|.. ..+ ...++||+..+..+.+... ++|++|+..|+|.....      
T Consensus       367 -----------~d~~v~kV~HNakfDl~~L~~~gi~~~~~~~DT~iAa~Ll~~~~~-~~L~~L~~~ylg~~~~~~~~~~g  434 (880)
T PRK05755        367 -----------EDPAIKKVGQNLKYDLHVLARYGIELRGIAFDTMLASYLLDPGRR-HGLDSLAERYLGHKTISFEEVAG  434 (880)
T ss_pred             -----------hCCCCcEEEeccHhHHHHHHhCCCCcCCCcccHHHHHHHcCCCCC-CCHHHHHHHHhCCCccchHHhcC
Confidence                       335567899999999999982 121 2568999998888887653 99999999998776310      


Q ss_pred             ------------CCCCcHHHHHHHHHHHHHHHhhhh
Q 019380          275 ------------GVHDPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       275 ------------~~H~A~~Da~~t~~l~~~~~~~~~  298 (342)
                                  ..|.|..||..++.||.++.++..
T Consensus       435 k~~~~~~~ple~~~~YAa~Dv~~~~~L~~~L~~~L~  470 (880)
T PRK05755        435 KQLTFAQVDLEEAAEYAAEDADVTLRLHEVLKPKLL  470 (880)
T ss_pred             CCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        136799999999999999998753

>PHA00733 hypothetical protein

Probab=98.11  E-value=2.9e-06  Score=68.01  Aligned_cols=53  Identities=23%  Similarity=0.486  Sum_probs=47.1

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhc
Q 019380            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHL   63 (342)
Q Consensus         8 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~   63 (342)
                      ++..++||.|+.|++.|.+...|..|++.  |+ ..+.|..|++.|.....|..|+
T Consensus        67 ~~~~~kPy~C~~Cgk~Fss~s~L~~H~r~--h~-~~~~C~~CgK~F~~~~sL~~H~  119 (128)
T PHA00733         67 TSKAVSPYVCPLCLMPFSSSVSLKQHIRY--TE-HSKVCPVCGKEFRNTDSTLDHV  119 (128)
T ss_pred             ccCCCCCccCCCCCCcCCCHHHHHHHHhc--CC-cCccCCCCCCccCCHHHHHHHH
Confidence            45678999999999999999999999997  63 2349999999999999999997

>PLN03086 PRLI-interacting factor K; Provisional

Probab=98.04  E-value=6.2e-06  Score=81.06  Aligned_cols=97  Identities=19%  Similarity=0.392  Sum_probs=65.2

Q ss_pred             CCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCcccccc
Q 019380           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCM   85 (342)
Q Consensus        11 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~   85 (342)
                      .++.+.|+.|++.|. ...|..|+++  |. ....|+ |++.+ ....|..|+     .+++.|+.|++.|..-....  
T Consensus       450 l~~H~~C~~Cgk~f~-~s~LekH~~~--~H-kpv~Cp-Cg~~~-~R~~L~~H~~thCp~Kpi~C~fC~~~v~~g~~~~--  521 (567)
T PLN03086        450 AKNHVHCEKCGQAFQ-QGEMEKHMKV--FH-EPLQCP-CGVVL-EKEQMVQHQASTCPLRLITCRFCGDMVQAGGSAM--  521 (567)
T ss_pred             cccCccCCCCCCccc-hHHHHHHHHh--cC-CCccCC-CCCCc-chhHHHhhhhccCCCCceeCCCCCCccccCcccc--
Confidence            356689999999996 6789999999  53 333899 99765 567899997     34555544444432100000  


Q ss_pred             ccc-CChhhHHHHHhhcCCCCCCCCcccccccc
Q 019380           86 NIF-DSPSSLIKHKEACSLSAPVPFKISGAIDE  117 (342)
Q Consensus        86 k~F-~~~~~L~~H~~~h~~~~~~~~~~c~~~~~  117 (342)
                       .| ...+.|..|...+ |.+++.|..|++...
T Consensus       522 -d~~d~~s~Lt~HE~~C-G~rt~~C~~Cgk~Vr  552 (567)
T PLN03086        522 -DVRDRLRGMSEHESIC-GSRTAPCDSCGRSVM  552 (567)
T ss_pred             -chhhhhhhHHHHHHhc-CCcceEccccCCeee
Confidence             00 0245789998885 899999999987644

>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases

Probab=97.89  E-value=7e-05  Score=64.84  Aligned_cols=122  Identities=16%  Similarity=0.172  Sum_probs=73.8

Q ss_pred             CCcceeccccccccc--CCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 019380          123 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  200 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~  200 (342)
                      .-++++||+||++.+  ++.....+..++++...+..++..  .+.             ....+.......+++.+|.++
T Consensus         2 ~l~i~~fDIEt~~~~g~p~~~~d~Ii~Is~~~~~~~~~~~~--~~~-------------~~~~v~~~~~E~~lL~~F~~~   66 (195)
T cd05780           2 DLKILSFDIEVLNHEGEPNPEKDPIIMISFADEGGNKVITW--KKF-------------DLPFVEVVKTEKEMIKRFIEI   66 (195)
T ss_pred             CceEEEEEEEecCCCCCCCCCCCcEEEEEEecCCCceEEEe--cCC-------------CCCeEEEeCCHHHHHHHHHHH
Confidence            346789999998421  122222224555554444332211  110             111334456678999999999


Q ss_pred             HhcCCCccccccCCCCCeEEEeeCch-hhhhhcc-------ccCCC----------------------cceeeccccccc
Q 019380          201 LNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR-------MNYPD----------------------HMLRDTAKYRPL  250 (342)
Q Consensus       201 l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~-------~~~~~----------------------~~~~Dt~~l~~~  250 (342)
                      +.+.           .-.+|||||.. ||+.+|.       +..+.                      ...+|+..+.+.
T Consensus        67 i~~~-----------dpdiivgyN~~~FD~pyL~~R~~~~gi~~~~~r~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~~~  135 (195)
T cd05780          67 VKEK-----------DPDVIYTYNGDNFDFPYLKKRAEKLGIELDLGRDGSEIKIQRGGFNNASEIKGRIHVDLYPVARR  135 (195)
T ss_pred             HHHc-----------CCCEEEecCCCCCcHHHHHHHHHHhCCCCccccCCCceeEeecceeeeeccCCeEEEeHHHHHHh
Confidence            9432           13599999965 8999987       22111                      235676666655


Q ss_pred             cccCCCCccHHHHHHHHhCCc
Q 019380          251 MKTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       251 ~~~~~~~~~L~~l~~~~~~~~  271 (342)
                      .. ...+++|+.+|+.+||.+
T Consensus       136 ~~-~l~sy~L~~v~~~~Lg~~  155 (195)
T cd05780         136 TL-NLTRYTLERVYEELFGIE  155 (195)
T ss_pred             hC-CCCcCcHHHHHHHHhCCC
Confidence            33 456899999999999987

The 3'-5' exonuclease domain of archaeal family-B DNA polymerases with similarity to Pyrococcus kodakaraensis Kod1, including polymerases from Desulfurococcus (D. Tok Pol) and Thermococcus gorgonarius (Tgo Pol). Kod1, D. Tok Pol, and Tgo Pol are thermostable enzymes that exhibit both polymerase and 3'-5' exonuclease activities. They are family-B DNA polymerases. Their amino termini harbor a DEDDy-type DnaQ-like 3'-5' exonuclease domain that contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members of this subfamily show

>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins

Probab=97.84  E-value=9e-05  Score=62.54  Aligned_cols=79  Identities=19%  Similarity=0.220  Sum_probs=61.5

Q ss_pred             CCeEEEeeCchhhhhhcccc--CCCcceeeccccccccccCCCCccHHHHHHHHhCCcCC--CC---------------C
Q 019380          216 KARLLVGHGLEHDLDSLRMN--YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ--SG---------------V  276 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~~~--~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~--~~---------------~  276 (342)
                      .+.+.|||++.+|+.+|...  .....++|++.++..+.+.....+|++|+..++|..+.  ..               -
T Consensus        72 ~~i~kv~~~~k~D~~~L~~~~g~~~~~~~Dl~~aa~ll~~~~~~~~l~~l~~~~l~~~~~k~k~~~~s~W~~rpLt~~qi  151 (170)
T cd06141          72 PSILKVGVGIKGDARKLARDFGIEVRGVVDLSHLAKRVGPRRKLVSLARLVEEVLGLPLSKPKKVRCSNWEARPLSKEQI  151 (170)
T ss_pred             CCeeEEEeeeHHHHHHHHhHcCCCCCCeeeHHHHHHHhCCCcCCccHHHHHHHHcCcccCCCCCcccCCCCCCCCCHHHH
Confidence            56678999999999998622  22244689999888887754456999999999999886  22               1


Q ss_pred             CCcHHHHHHHHHHHHHHH
Q 019380          277 HDPYEDCVSVMRLYKRFR  294 (342)
Q Consensus       277 H~A~~Da~~t~~l~~~~~  294 (342)
                      +-|..||..+..||.++.
T Consensus       152 ~YAa~Da~~~~~l~~~l~  169 (170)
T cd06141         152 LYAATDAYASLELYRKLL  169 (170)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            457889999999998875

WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability.

>PHA00732 hypothetical protein

Probab=97.81  E-value=1.5e-05  Score=58.07  Aligned_cols=44  Identities=30%  Similarity=0.519  Sum_probs=36.2

Q ss_pred             cccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhc
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHL   63 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~   63 (342)
                      ||+|+.|++.|.+...|..|++.+ |++.  .|+.|++.|.   ++..|.
T Consensus         1 py~C~~Cgk~F~s~s~Lk~H~r~~-H~~~--~C~~CgKsF~---~l~~H~   44 (79)
T PHA00732          1 MFKCPICGFTTVTLFALKQHARRN-HTLT--KCPVCNKSYR---RLNQHF   44 (79)
T ss_pred             CccCCCCCCccCCHHHHHHHhhcc-cCCC--ccCCCCCEeC---Chhhhh
Confidence            689999999999999999999842 5532  7999999887   466776

>PHA00616 hypothetical protein

Probab=97.77  E-value=1e-05  Score=51.36  Aligned_cols=32  Identities=19%  Similarity=0.364  Sum_probs=29.5

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.||+.|.+++.|..|++.|||++++.++-
T Consensus         3 qC~~CG~~F~~~s~l~~H~r~~hg~~~~~~~~   34 (44)
T PHA00616          3 QCLRCGGIFRKKKEVIEHLLSVHKQNKLTLEY   34 (44)
T ss_pred             ccchhhHHHhhHHHHHHHHHHhcCCCccceeE
Confidence            48999999999999999999999999988764

>PHA00616 hypothetical protein

Probab=97.75  E-value=1.5e-05  Score=50.57  Aligned_cols=33  Identities=21%  Similarity=0.410  Sum_probs=29.0

Q ss_pred             cccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      ||+|+.||+.|.+++.|..|++.  |+++++ .|..
T Consensus         1 pYqC~~CG~~F~~~s~l~~H~r~--~hg~~~~~~~~   34 (44)
T PHA00616          1 MYQCLRCGGIFRKKKEVIEHLLS--VHKQNKLTLEY   34 (44)
T ss_pred             CCccchhhHHHhhHHHHHHHHHH--hcCCCccceeE
Confidence            79999999999999999999999  777766 6654

>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins

Probab=97.70  E-value=0.00019  Score=60.04  Aligned_cols=78  Identities=23%  Similarity=0.220  Sum_probs=59.4

Q ss_pred             CCeEEEeeCchhhhhhccc--cCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCC---------------CCC
Q 019380          216 KARLLVGHGLEHDLDSLRM--NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG---------------VHD  278 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~~--~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~---------------~H~  278 (342)
                      .+.+.|||++..|+..|..  ......++|++..+..+.+. .+.+|+.|+..|+|..+++.               -+-
T Consensus        66 ~~i~Kvg~~~k~D~~~L~~~~gi~~~~~~D~~~aa~ll~~~-~~~~L~~l~~~~lg~~l~K~~~~s~W~~rpLt~~qi~Y  144 (161)
T cd06129          66 PSIVKALHGIEGDLWKLLRDFGEKLQRLFDTTIAANLKGLP-ERWSLASLVEHFLGKTLDKSISCADWSYRPLTEDQKLY  144 (161)
T ss_pred             CCEEEEEeccHHHHHHHHHHcCCCcccHhHHHHHHHHhCCC-CCchHHHHHHHHhCCCCCccceeccCCCCCCCHHHHHH
Confidence            5567799999999999863  23223468998877766553 45799999999999987544               145


Q ss_pred             cHHHHHHHHHHHHHHH
Q 019380          279 PYEDCVSVMRLYKRFR  294 (342)
Q Consensus       279 A~~Da~~t~~l~~~~~  294 (342)
                      |..||..+..||.++.
T Consensus       145 Aa~Da~~l~~l~~~l~  160 (161)
T cd06129         145 AAADVYALLIIYTKLR  160 (161)
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7779999999998875

The RNase D-like group is composed of RNase D, WRN, and similar proteins. They contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease domain that contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase D is involved in the 3'-end processing of tRNA precursors. RNase D-like proteins in eukaryotes include yeast Rrp6p, human PM/Scl-100 and Drosophila melanogaster egalitarian (Egl) protein. WRN is a unique DNA helicase possessing exonuclease activity. Mutation in the WRN gene is implicated in Werner syndrome, a disease associated with premature aging and increased predisposition to cancer. Yeast Rrp6p and the human Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100) are exosome-

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.67  E-value=2.6e-05  Score=44.15  Aligned_cols=25  Identities=36%  Similarity=0.707  Sum_probs=21.7

Q ss_pred             HHHHHHhhhccCCCCC-ccccCccccCC
Q 019380           29 HLIEHMKISYHSVHQP-KCAVCQKLSKS   55 (342)
Q Consensus        29 ~L~~H~~~~~H~~~~~-~C~~C~~~f~~   55 (342)
                      +|.+|+++  |++++| .|+.|++.|.+
T Consensus         1 ~l~~H~~~--H~~~k~~~C~~C~k~F~~   26 (26)
T PF13465_consen    1 NLRRHMRT--HTGEKPYKCPYCGKSFSN   26 (26)
T ss_dssp             HHHHHHHH--HSSSSSEEESSSSEEESS
T ss_pred             CHHHHhhh--cCCCCCCCCCCCcCeeCc
Confidence            58899999  999998 99999998863

...

>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases

Probab=97.63  E-value=0.00024  Score=61.04  Aligned_cols=113  Identities=15%  Similarity=0.187  Sum_probs=68.8

Q ss_pred             CCcceeccccccccc--CCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 019380          123 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  200 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~  200 (342)
                      .-+.++||.||++..  ++.....+..++....+|.+.+-.                       ....+..+++.+|.++
T Consensus         2 ~l~~l~fDIEt~~~~gfp~~~~d~Ii~Is~~~~~g~~~~~~-----------------------~~~~~E~~lL~~F~~~   58 (188)
T cd05781           2 DLKTLAFDIEVYSKYGTPNPRRDPIIVISLATSNGDVEFIL-----------------------AEGLDDRKIIREFVKY   58 (188)
T ss_pred             CceEEEEEEEecCCCCCCCCCCCCEEEEEEEeCCCCEEEEE-----------------------ecCCCHHHHHHHHHHH
Confidence            346789999998421  222222224555554445432110                       1246788999999999


Q ss_pred             HhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-------ccCCC--------------------cceeeccccccccc
Q 019380          201 LNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNYPD--------------------HMLRDTAKYRPLMK  252 (342)
Q Consensus       201 l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~~~--------------------~~~~Dt~~l~~~~~  252 (342)
                      +.+.           ...+|+|||. .||+.+|.       +..+.                    ...+|...+.+...
T Consensus        59 i~~~-----------dPd~i~gyN~~~FDlpyl~~Ra~~~gi~~~~gr~~~~~~~~~~~~~~~i~Gr~~iDl~~~~~~~~  127 (188)
T cd05781          59 VKEY-----------DPDIIVGYNSNAFDWPYLVERARVLGVKLDVGRRGGSEPSTGVYGHYSITGRLNVDLYDFAEEIP  127 (188)
T ss_pred             HHHc-----------CCCEEEecCCCcCcHHHHHHHHHHhCCCcccccCCCcccccCCcceEeeeeEEEEEhHHHHHhhC
Confidence            9543           2359999995 48999987       11110                    11566655554443


Q ss_pred             cCCCCccHHHHHHHHhCCc
Q 019380          253 TNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       253 ~~~~~~~L~~l~~~~~~~~  271 (342)
                       ...+++|+.+|.. ||..
T Consensus       128 -~l~~y~L~~Va~~-Lg~~  144 (188)
T cd05781         128 -EVKVKTLENVAEY-LGVM  144 (188)
T ss_pred             -CCCCCCHHHHHHH-HCCC
Confidence             3578999999986 5864

The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio

>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis]

Probab=97.63  E-value=0.00029  Score=65.52  Aligned_cols=137  Identities=23%  Similarity=0.277  Sum_probs=92.4

Q ss_pred             CCCcceecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHH
Q 019380          122 RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  201 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l  201 (342)
                      ....++++|+|+.+...-.. .+ +-|.|.+.++    ..+|.|..+               ..+.++|.       ..+
T Consensus        15 ~~~~~iAiDTEf~r~~t~~p-~L-cLIQi~~~e~----~~lIdpl~~---------------~~d~~~l~-------~Ll   66 (361)
T COG0349          15 RGSKAIAIDTEFMRLRTYYP-RL-CLIQISDGEG----ASLIDPLAG---------------ILDLPPLV-------ALL   66 (361)
T ss_pred             cCCCceEEecccccccccCC-ce-EEEEEecCCC----ceEeccccc---------------ccccchHH-------HHh
Confidence            34568999999998743222 22 5666655555    233333331               11233333       334


Q ss_pred             hcCCCccccccCCCCCeEEEeeCchhhhhhccc--cCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCCC---
Q 019380          202 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM--NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV---  276 (342)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~--~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~---  276 (342)
                                  .+.+.+=|-|+++||+.+|.-  ..-..+++||...++...... +++|++|++.++|++|.++.   
T Consensus        67 ------------~d~~v~KIfHaa~~DL~~l~~~~g~~p~plfdTqiAa~l~g~~~-~~gl~~Lv~~ll~v~ldK~~q~S  133 (361)
T COG0349          67 ------------ADPNVVKIFHAARFDLEVLLNLFGLLPTPLFDTQIAAKLAGFGT-SHGLADLVEELLGVELDKSEQRS  133 (361)
T ss_pred             ------------cCCceeeeeccccccHHHHHHhcCCCCCchhHHHHHHHHhCCcc-cccHHHHHHHHhCCccccccccc
Confidence                        235566688999999999982  222356899998777664443 89999999999999998872   


Q ss_pred             ---CC---------cHHHHHHHHHHHHHHHhhhhh
Q 019380          277 ---HD---------PYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       277 ---H~---------A~~Da~~t~~l~~~~~~~~~~  299 (342)
                         ++         |..|+.....||.++.++..+
T Consensus       134 DW~~RPLs~~Ql~YAa~DV~yL~~l~~~L~~~L~~  168 (361)
T COG0349         134 DWLARPLSEAQLEYAAADVEYLLPLYDKLTEELAR  168 (361)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               33         567888999999999877554

>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A

Probab=97.61  E-value=6.3e-05  Score=63.02  Aligned_cols=74  Identities=22%  Similarity=0.182  Sum_probs=38.3

Q ss_pred             CCeEEEeeC-chhhhhhccc-----cCC-CcceeeccccccccccCCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHH
Q 019380          216 KARLLVGHG-LEHDLDSLRM-----NYP-DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMR  288 (342)
Q Consensus       216 ~~~~lvgh~-~~~D~~~l~~-----~~~-~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~  288 (342)
                      +...+|+|| ..||+.+|+-     ..+ ....+|+....+....  .+++|+.++..+ |+..+    .--.+-..+..
T Consensus        56 ~~~~iv~yng~~FD~p~L~~~~~~~~~~~~~~~iDl~~~~~~~~~--~~~~Lk~ve~~l-g~~~~----~~~~~G~~~~~  128 (164)
T PF13482_consen   56 EADNIVTYNGKNFDIPFLKRRAKRYGLPPPFNHIDLLKIIKKHFL--ESYSLKNVEKFL-GIERR----DDDISGSESVK  128 (164)
T ss_dssp             TT--EEESSTTTTHHHHHHHHH-HHHH--GGGEEEHHHHHT-TTS--CCTT--SHHH----------------HHHHHHH
T ss_pred             cCCeEEEEeCcccCHHHHHHHHHHcCCCcccchhhHHHHHHhccC--CCCCHHHHhhhc-ccccc----cCCCCHHHHHH
Confidence            557899998 6889999992     223 4668898877654433  678999999987 87732    12234455666


Q ss_pred             HHHHHHhh
Q 019380          289 LYKRFRRQ  296 (342)
Q Consensus       289 l~~~~~~~  296 (342)
                      +|..++..
T Consensus       129 ~~~~~~~~  136 (164)
T PF13482_consen  129 LYKEYLET  136 (164)
T ss_dssp             HHH---TT
T ss_pred             HHHHHHhc
Confidence            66665544

...

>PRK10829 ribonuclease D; Provisional

Probab=97.55  E-value=0.00056  Score=64.93  Aligned_cols=83  Identities=12%  Similarity=0.117  Sum_probs=63.7

Q ss_pred             CCeEEEeeCchhhhhhcc--ccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCCC---------------CC
Q 019380          216 KARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV---------------HD  278 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~---------------H~  278 (342)
                      .+-+-|+|++.+|+.+|.  .......++||+..+..+. ...+.+|..|++.++|+.++++.               +-
T Consensus        73 ~~ivKV~H~~~~Dl~~l~~~~g~~p~~~fDTqiaa~~lg-~~~~~gl~~Lv~~~lgv~ldK~~~~sDW~~RPLs~~ql~Y  151 (373)
T PRK10829         73 PQVTKFLHAGSEDLEVFLNAFGELPQPLIDTQILAAFCG-RPLSCGFASMVEEYTGVTLDKSESRTDWLARPLSERQCEY  151 (373)
T ss_pred             CCeEEEEeChHhHHHHHHHHcCCCcCCeeeHHHHHHHcC-CCccccHHHHHHHHhCCccCcccccCCCCCCCCCHHHHHH
Confidence            555668999999999985  3333356999988776653 23468999999999999887661               33


Q ss_pred             cHHHHHHHHHHHHHHHhhhhh
Q 019380          279 PYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       279 A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      |..|+..+..||.++.++..+
T Consensus       152 Aa~Dv~~L~~l~~~L~~~L~~  172 (373)
T PRK10829        152 AAADVFYLLPIAAKLMAETEA  172 (373)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            677999999999999877654

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=97.55  E-value=2.1e-05  Score=73.09  Aligned_cols=89  Identities=20%  Similarity=0.351  Sum_probs=65.4

Q ss_pred             CcccccccccccCCHHHHHHHH--hhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCC-----------------
Q 019380           13 ARHKCVACYKQFKRKDHLIEHM--KISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCS-----------------   73 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~--~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~-----------------   73 (342)
                      ..|.|..|...|-..-.|-+|+  ++. |  .+|+|.+|+|.|+...+|..|..+.++-..-.                 
T Consensus       266 GdyiCqLCK~kYeD~F~LAQHrC~RIV-~--vEYrCPEC~KVFsCPANLASHRRWHKPR~eaa~a~~~P~k~~~~~rae~  342 (500)
T KOG3993|consen  266 GDYICQLCKEKYEDAFALAQHRCPRIV-H--VEYRCPECDKVFSCPANLASHRRWHKPRPEAAKAGSPPPKQAVETRAEV  342 (500)
T ss_pred             HHHHHHHHHHhhhhHHHHhhccCCeeE-E--eeecCCcccccccCchhhhhhhcccCCchhhhhcCCCChhhhhhhhhhh
Confidence            3588999999999999999997  331 2  35699999999999999999983332221111                 


Q ss_pred             ----CcccCC-----cccccccccCChhhHHHHHhhcCCC
Q 019380           74 ----GIFSDR-----GCNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        74 ----k~f~~~-----~C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                          +.=.++     .|..|+|.|.+...|+.|+.+|+..
T Consensus       343 ~ea~rsg~dss~gi~~C~~C~KkFrRqAYLrKHqlthq~~  382 (500)
T KOG3993|consen  343 QEAERSGDDSSSGIFSCHTCGKKFRRQAYLRKHQLTHQRA  382 (500)
T ss_pred             hhccccCCcccCceeecHHhhhhhHHHHHHHHhHHhhhcc
Confidence                000001     2999999999999999999988833

>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]

Probab=97.54  E-value=5e-05  Score=70.61  Aligned_cols=48  Identities=27%  Similarity=0.454  Sum_probs=40.2

Q ss_pred             cccccccccccCCHHHHHHHHhhhccC--------CCC--------------------------CccccCccccCChhhh
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHS--------VHQ--------------------------PKCAVCQKLSKSFESL   59 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~--------~~~--------------------------~~C~~C~~~f~~~~~l   59 (342)
                      .|+|+.|+|.|+...+|-.|++=  |.        +..                          +.|..|+|.|++...|
T Consensus       295 EYrCPEC~KVFsCPANLASHRRW--HKPR~eaa~a~~~P~k~~~~~rae~~ea~rsg~dss~gi~~C~~C~KkFrRqAYL  372 (500)
T KOG3993|consen  295 EYRCPECDKVFSCPANLASHRRW--HKPRPEAAKAGSPPPKQAVETRAEVQEAERSGDDSSSGIFSCHTCGKKFRRQAYL  372 (500)
T ss_pred             eecCCcccccccCchhhhhhhcc--cCCchhhhhcCCCChhhhhhhhhhhhhccccCCcccCceeecHHhhhhhHHHHHH
Confidence            49999999999999999999986  42        111                          2599999999999999


Q ss_pred             hhhc
Q 019380           60 REHL   63 (342)
Q Consensus        60 ~~H~   63 (342)
                      +.|+
T Consensus       373 rKHq  376 (500)
T KOG3993|consen  373 RKHQ  376 (500)
T ss_pred             HHhH
Confidence            9996

>TIGR01388 rnd ribonuclease D

Probab=97.41  E-value=0.0014  Score=62.34  Aligned_cols=82  Identities=18%  Similarity=0.240  Sum_probs=61.9

Q ss_pred             CCeEEEeeCchhhhhhccc---cCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCCC------CC--------
Q 019380          216 KARLLVGHGLEHDLDSLRM---NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV------HD--------  278 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~~---~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~------H~--------  278 (342)
                      .+.+.|+|++..|+.+|..   ..| ..+.||+..+..+.+. .+.+|+.|++.|+|+.+.++.      .+        
T Consensus        69 ~~i~KV~h~~k~Dl~~L~~~~~~~~-~~~fDtqlAa~lL~~~-~~~~l~~Lv~~~Lg~~l~K~~~~sdW~~rPL~~~q~~  146 (367)
T TIGR01388        69 ESVVKVLHAASEDLEVFLNLFGELP-QPLFDTQIAAAFCGFG-MSMGYAKLVQEVLGVELDKSESRTDWLARPLTDAQLE  146 (367)
T ss_pred             CCceEEEeecHHHHHHHHHHhCCCC-CCcccHHHHHHHhCCC-CCccHHHHHHHHcCCCCCcccccccCCCCCCCHHHHH
Confidence            5567899999999999872   233 4578998877666554 346999999999999876531      22        


Q ss_pred             -cHHHHHHHHHHHHHHHhhhhh
Q 019380          279 -PYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       279 -A~~Da~~t~~l~~~~~~~~~~  299 (342)
                       |..||..+..||..+.++..+
T Consensus       147 YAa~Dv~~L~~L~~~L~~~L~~  168 (367)
T TIGR01388       147 YAAADVTYLLPLYAKLMERLEE  168 (367)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence             677899999999999877654

This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.41  E-value=8.7e-05  Score=40.57  Aligned_cols=22  Identities=41%  Similarity=0.689  Sum_probs=20.8

Q ss_pred             ccccccccccCCHHHHHHHHhh
Q 019380           15 HKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        15 ~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      |+|+.|++.|.++..|..|++.
T Consensus         1 y~C~~C~~~f~~~~~l~~H~~~   22 (23)
T PF00096_consen    1 YKCPICGKSFSSKSNLKRHMRR   22 (23)
T ss_dssp             EEETTTTEEESSHHHHHHHHHH
T ss_pred             CCCCCCCCccCCHHHHHHHHhH
Confidence            7899999999999999999987

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=97.30  E-value=0.0001  Score=41.71  Aligned_cols=24  Identities=17%  Similarity=0.144  Sum_probs=21.6

Q ss_pred             hHHHHHhhcCCCCCCCCccccccc
Q 019380           93 SLIKHKEACSLSAPVPFKISGAID  116 (342)
Q Consensus        93 ~L~~H~~~h~~~~~~~~~~c~~~~  116 (342)
                      +|.+|+++|.+++|+.|+.|+++.
T Consensus         1 ~l~~H~~~H~~~k~~~C~~C~k~F   24 (26)
T PF13465_consen    1 NLRRHMRTHTGEKPYKCPYCGKSF   24 (26)
T ss_dssp             HHHHHHHHHSSSSSEEESSSSEEE
T ss_pred             CHHHHhhhcCCCCCCCCCCCcCee
Confidence            589999999999999999998763

...

>cd00007 35EXOc 3'-5' exonuclease

Probab=97.29  E-value=0.00047  Score=56.51  Aligned_cols=69  Identities=29%  Similarity=0.315  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccccC--CCcceeeccccccccccCCCCccHHHHHHHHh
Q 019380          191 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY--PDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYL  268 (342)
Q Consensus       191 ~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~--~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~  268 (342)
                      ..+.+.+.+++            .+.+..+||||+.+|+.+|.-..  ....++||+.++..+.|....++|++|++.|+
T Consensus        40 ~~~~~~l~~~l------------~~~~~~~v~~~~k~d~~~L~~~~~~~~~~~~D~~~~ayll~~~~~~~~l~~l~~~~l  107 (155)
T cd00007          40 EEDLEALKELL------------EDEDITKVGHDAKFDLVVLARDGIELPGNIFDTMLAAYLLNPGEGSHSLDDLAKEYL  107 (155)
T ss_pred             HHHHHHHHHHH------------cCCCCcEEeccHHHHHHHHHHCCCCCCCCcccHHHHHHHhCCCCCcCCHHHHHHHHc
Confidence            56777788888            22456799999999999997221  11447899999988888653579999999998


Q ss_pred             CCc
Q 019380          269 GYD  271 (342)
Q Consensus       269 ~~~  271 (342)
                      +..
T Consensus       108 ~~~  110 (155)
T cd00007         108 GIE  110 (155)
T ss_pred             CCC
Confidence            776

The 35EXOc domain is responsible for the 3'-5' exonuclease proofreading activity of prokaryotic DNA polymerase I (pol I) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli pol I. 35EXOc is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D).

>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase

Probab=97.26  E-value=0.002  Score=56.04  Aligned_cols=74  Identities=19%  Similarity=0.157  Sum_probs=49.2

Q ss_pred             CCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-------ccCC----C------------ccee
Q 019380          187 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNYP----D------------HMLR  242 (342)
Q Consensus       187 ~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~~----~------------~~~~  242 (342)
                      .....+++.+|.+++.+.           .-.+++|||. .||+.+|.       +...    .            ...+
T Consensus        70 ~~~E~~lL~~f~~~i~~~-----------~Pd~i~gyN~~~FD~pyl~~R~~~~~~~~~~~~g~~~~~~~~~~~~gr~~i  138 (204)
T cd05779          70 EPDEKALLQRFFEHIREV-----------KPHIIVTYNGDFFDWPFVEARAAIHGLSMEEEIGFRKDSEGEYKSRYIIHM  138 (204)
T ss_pred             CCCHHHHHHHHHHHHHHh-----------CCCEEEecCccccCHHHHHHHHHHhCCCchhhhCeEecCCCeEEeccEEEE
Confidence            467889999999999432           2249999994 58999987       1111    0            1135


Q ss_pred             ecccccccc-ccCCCCccHHHHHHHHhCCc
Q 019380          243 DTAKYRPLM-KTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       243 Dt~~l~~~~-~~~~~~~~L~~l~~~~~~~~  271 (342)
                      |...+.+.. .....+++|+.+|+.+||..
T Consensus       139 Dl~~~~~~~~~l~~~sysLd~Va~~~Lg~~  168 (204)
T cd05779         139 DCFRWVKRDSYLPQGSQGLKAVTKAKLGYD  168 (204)
T ss_pred             EhHHHHHHhhcCCCCCccHHHHHHHHhCCC
Confidence            555544432 21235899999999988975

The 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon. DNA polymerase epsilon is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and delta are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase epsilon plays a role in elongating the leading strand during DNA replication. It is also involved in DNA repair. The catalytic subunit contains both polymerase and 3'-5' exonuclease activities. The N-terminal exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. DNA polymerase epsilon also carries a unique

>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases

Probab=97.26  E-value=0.0033  Score=54.28  Aligned_cols=120  Identities=18%  Similarity=0.225  Sum_probs=70.5

Q ss_pred             CCcceecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHh
Q 019380          123 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  202 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~  202 (342)
                      .-++++||+|+++.+     ++ -.+...+.....++-. -.+. +.       .|   ..+.-.++..+++..|.+++.
T Consensus         2 ~l~~~~fDIE~~~~~-----~i-~~i~~~~~~~~~i~~~-~~~~-~~-------~~---~~v~~~~~E~~lL~~f~~~i~   63 (193)
T cd05784           2 KLKVVSLDIETSMDG-----EL-YSIGLYGEGQERVLMV-GDPE-DD-------AP---DNIEWFADEKSLLLALIAWFA   63 (193)
T ss_pred             CccEEEEEeecCCCC-----CE-EEEEeecCCCCEEEEE-CCCC-CC-------CC---CEEEEECCHHHHHHHHHHHHH
Confidence            346889999998653     33 3344433332322211 1111 10       01   123334678889999999995


Q ss_pred             cCCCccccccCCCCCeEEEeeCch-hhhhhcc-------ccCC------------------------Ccceeeccccccc
Q 019380          203 NGESTGRLMLDDGKARLLVGHGLE-HDLDSLR-------MNYP------------------------DHMLRDTAKYRPL  250 (342)
Q Consensus       203 ~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~-------~~~~------------------------~~~~~Dt~~l~~~  250 (342)
                      +.           .-.+|+|||+. ||+.+|.       +..+                        -..++|+..+.+.
T Consensus        64 ~~-----------dPDvi~g~N~~~FD~~yl~~R~~~~~i~~~~gR~~~~~~~~~~g~~~~~~~~i~GR~~~D~~~~~k~  132 (193)
T cd05784          64 QY-----------DPDIIIGWNVINFDLRLLQRRAEAHGLPLRLGRGGSPLNWRQSGKPGQGFLSLPGRVVLDGIDALKT  132 (193)
T ss_pred             hh-----------CCCEEEECCCcCcCHHHHHHHHHHhCCCcccccCCCccccccCCcCCcceEEEeeEEEEEhHHHHHH
Confidence            43           22499999965 5998877       1111                        0125566555443


Q ss_pred             cccCCCCccHHHHHHHHhCCc
Q 019380          251 MKTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       251 ~~~~~~~~~L~~l~~~~~~~~  271 (342)
                      ......+|+|+++|+.+||..
T Consensus       133 ~~~kl~sy~L~~Va~~~Lg~~  153 (193)
T cd05784         133 ATYHFESFSLENVAQELLGEG  153 (193)
T ss_pred             ccCCCCcCCHHHHHHHHhCCC
Confidence            222467999999999998875

The 3'-5' exonuclease domain of Escherichia coli DNA polymerase II (Pol II) and similar bacterial proteins. Pol II is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain has a fundamental role in the proofreading activity of polII. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Pol II is involved in a variety of cellular activities, such as the repair of DNA damaged

>PLN03086 PRLI-interacting factor K; Provisional

Probab=97.24  E-value=0.00022  Score=70.35  Aligned_cols=73  Identities=16%  Similarity=0.380  Sum_probs=55.3

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCC----------hhhhhhhc----CCCcccCCCCCccc
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKS----------FESLREHL----TGPLSKAHCSGIFS   77 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~----------~~~l~~H~----~~~~~C~~C~k~f~   77 (342)
                      +|+.|+ |++.+ .+..|..|+.+  |...++ .|..|++.+..          .+.|..|.    .+++.         
T Consensus       477 kpv~Cp-Cg~~~-~R~~L~~H~~t--hCp~Kpi~C~fC~~~v~~g~~~~d~~d~~s~Lt~HE~~CG~rt~~---------  543 (567)
T PLN03086        477 EPLQCP-CGVVL-EKEQMVQHQAS--TCPLRLITCRFCGDMVQAGGSAMDVRDRLRGMSEHESICGSRTAP---------  543 (567)
T ss_pred             CCccCC-CCCCc-chhHHHhhhhc--cCCCCceeCCCCCCccccCccccchhhhhhhHHHHHHhcCCcceE---------
Confidence            789999 99755 67899999998  998888 99999999852          34688886    23333         


Q ss_pred             CCcccccccccCChhhHHHHHhhcC
Q 019380           78 DRGCNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        78 ~~~C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                         |..||+.+..+. +..|+...|
T Consensus       544 ---C~~Cgk~Vrlrd-m~~H~~~~h  564 (567)
T PLN03086        544 ---CDSCGRSVMLKE-MDIHQIAVH  564 (567)
T ss_pred             ---ccccCCeeeehh-HHHHHHHhh
Confidence               677887777664 667776544

>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins

Probab=97.18  E-value=0.00095  Score=57.84  Aligned_cols=138  Identities=22%  Similarity=0.222  Sum_probs=85.3

Q ss_pred             CCcceecccccccccCCCcccccceEEeecCCCCe-EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHH
Q 019380          123 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENV-IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEIL  201 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~-~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l  201 (342)
                      ..+++++|+|+.+.+..+.+   .-+.+-...+.+ +|+.+-.+.                        ......+.+++
T Consensus         9 ~~~~i~~D~E~~~~~~~~~~---~LiQia~~~~~v~l~D~~~~~~------------------------~~~~~~L~~iL   61 (197)
T cd06148           9 KQKVIGLDCEGVNLGRKGKL---CLVQIATRTGQIYLFDILKLGS------------------------IVFINGLKDIL   61 (197)
T ss_pred             hCCEEEEEcccccCCCCCCE---EEEEEeeCCCcEEEEEhhhccc------------------------hhHHHHHHHHh
Confidence            36789999999877654333   233332231233 455442111                        01224455666


Q ss_pred             hcCCCccccccCCCCCeEEEeeCchhhhhhcc--ccCCCcceeeccccccccccCC-------CCccHHHHHHHHhCCcC
Q 019380          202 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNL-------VSHSLKYLTRTYLGYDI  272 (342)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~-------~~~~L~~l~~~~~~~~~  272 (342)
                                  ++.+.+-|+|++.+|+.+|.  .......+.||+..+..+.+..       ...+|+.++..|+|+++
T Consensus        62 ------------e~~~i~Kv~h~~k~D~~~L~~~~gi~~~~~fDt~iA~~lL~~~~~~~~~~~~~~~L~~l~~~~l~~~~  129 (197)
T cd06148          62 ------------ESKKILKVIHDCRRDSDALYHQYGIKLNNVFDTQVADALLQEQETGGFNPDRVISLVQLLDKYLYISI  129 (197)
T ss_pred             ------------cCCCccEEEEechhHHHHHHHhcCccccceeeHHHHHHHHHHHhcCCccccccccHHHHHHHhhCCCh
Confidence                        23555679999999999983  2222234689987655554322       13689999999999886


Q ss_pred             CC-------------C-C---------CCcHHHHHHHHHHHHHHHhhhhh
Q 019380          273 QS-------------G-V---------HDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       273 ~~-------------~-~---------H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      ..             + .         .=|..||..+..||..++.....
T Consensus       130 ~k~~~~~~~~~~~~s~W~~RPLt~~ql~YAa~Dv~~Ll~l~~~l~~~l~~  179 (197)
T cd06148         130 SLKEDVKKLMREDPKFWALRPLTEDMIRYAALDVLCLLPLYYAMLDALIS  179 (197)
T ss_pred             HHHHHHHHHHhcCchhhhcCCCCHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence            31             1 1         33667999999999999888644

The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation of this subfamily throughout eukaryotes suggests that its members may be part of ancient RNA processing complexes that are likely to participate in the regulated processing of specific mRNAs. Some members of this subfamily do not have a completely conserved YX(3)D pattern at the ExoIII motif.

>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases

Probab=97.12  E-value=0.009  Score=52.15  Aligned_cols=73  Identities=23%  Similarity=0.364  Sum_probs=50.4

Q ss_pred             CCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-------ccCCC--------------------
Q 019380          187 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNYPD--------------------  238 (342)
Q Consensus       187 ~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~~~--------------------  238 (342)
                      ..+..+++.+|++++.+.           .-.+|||||+ .||+.+|.       +..+.                    
T Consensus        55 ~~~E~~lL~~f~~~i~~~-----------dPdii~g~N~~~FD~pyl~~R~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~  123 (207)
T cd05785          55 DAAEKELLEELVAIIRER-----------DPDVIEGHNIFRFDLPYLRRRCRRHGVPLAIGRDGSIPRQRPSRFRFAERL  123 (207)
T ss_pred             CCCHHHHHHHHHHHHHHh-----------CCCEEeccCCcccCHHHHHHHHHHhCCCcccccCCCcceEeeccccccccc
Confidence            578899999999999442           1259999998 89999987       11110                    


Q ss_pred             ----------cceeecccccccc---ccCCCCccHHHHHHHHhCCc
Q 019380          239 ----------HMLRDTAKYRPLM---KTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       239 ----------~~~~Dt~~l~~~~---~~~~~~~~L~~l~~~~~~~~  271 (342)
                                ..++|+..+.+..   .....+|+|+.+|..| |+.
T Consensus       124 ~~~~~~~i~Gr~~iDl~~~~~~~~~~~~~l~sysL~~Va~~~-g~~  168 (207)
T cd05785         124 IDYPRYDIPGRHVIDTYFLVQLFDVSSRDLPSYGLKAVAKHF-GLA  168 (207)
T ss_pred             cccceEEecCEEEEEcHHHHHhhcccccCCCCCCHHHHHHHh-ccc
Confidence                      1226776654431   2244689999999988 653

A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.07  E-value=0.00027  Score=38.55  Aligned_cols=21  Identities=33%  Similarity=0.640  Sum_probs=18.9

Q ss_pred             ccccccccCChhhHHHHHhhc
Q 019380           81 CNLCMNIFDSPSSLIKHKEAC  101 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h  101 (342)
                      |+.|+++|..++.|..|++.|
T Consensus         3 C~~C~~~f~~~~~l~~H~~~H   23 (23)
T PF00096_consen    3 CPICGKSFSSKSNLKRHMRRH   23 (23)
T ss_dssp             ETTTTEEESSHHHHHHHHHHH
T ss_pred             CCCCCCccCCHHHHHHHHhHC
Confidence            789999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>KOG0304 consensus mRNA deadenylase subunit [RNA processing and modification]

Probab=97.00  E-value=0.0015  Score=55.95  Aligned_cols=109  Identities=13%  Similarity=0.127  Sum_probs=76.5

Q ss_pred             ccCCCCHhhhc-CCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc-----cc-------------
Q 019380          175 EVTGLTEEDIK-NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-----MN-------------  235 (342)
Q Consensus       175 ~i~GIt~e~l~-~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-----~~-------------  235 (342)
                      +-+||.-+... .+....+..+.+..-..-          -+++..+|.....+|+..|-     -.             
T Consensus       109 r~~Gidf~K~~e~GI~~~~F~ellm~sg~v----------~~~~V~WvTFhs~YDfgYLlK~Lt~~~LP~~~~eF~~~v~  178 (239)
T KOG0304|consen  109 RRSGIDFEKHREEGIDIEEFAELLMTSGLV----------LDENVTWVTFHSGYDFGYLLKILTGKPLPETEEEFFEIVR  178 (239)
T ss_pred             HHcCcCHHHHHHcCCCHHHHHHHHHHhhhh----------ccCceEEEEeeccchHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            34777766665 345544444444433211          13678999999999999876     11             


Q ss_pred             --CCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhh
Q 019380          236 --YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ  296 (342)
Q Consensus       236 --~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~  296 (342)
                        +|.  +.|+..+++.......+.+|+.+|..+ |++-.+-+|.|=.|+..|+..|.++.+.
T Consensus       179 ~~fp~--vYDiK~l~~~c~~~~l~~GL~~lA~~L-~~~RvG~~HqAGSDSlLT~~~F~kl~~~  238 (239)
T KOG0304|consen  179 QLFPF--VYDVKYLMKFCEGLSLKGGLQRLADLL-GLKRVGIAHQAGSDSLLTARVFFKLKEL  238 (239)
T ss_pred             HHcch--hhhHHHHHHhhhhhhhhcCHHHHHHHh-CCCeeecccccCcHHHHHHHHHHHHHhc
Confidence              233  567777777765555689999999998 9995444999999999999999998764

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.94  E-value=0.00067  Score=37.04  Aligned_cols=23  Identities=35%  Similarity=0.729  Sum_probs=19.3

Q ss_pred             ccccccccccCCHHHHHHHHhhh
Q 019380           15 HKCVACYKQFKRKDHLIEHMKIS   37 (342)
Q Consensus        15 ~~C~~C~k~f~~~~~L~~H~~~~   37 (342)
                      |.|+.|++.|.+...|..|+..+
T Consensus         1 ~~C~~C~~~~~~~~~l~~H~~~~   23 (24)
T PF13894_consen    1 FQCPICGKSFRSKSELRQHMRTH   23 (24)
T ss_dssp             EE-SSTS-EESSHHHHHHHHHHH
T ss_pred             CCCcCCCCcCCcHHHHHHHHHhh
Confidence            78999999999999999999873

...

>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases

Probab=96.82  E-value=0.028  Score=48.93  Aligned_cols=75  Identities=16%  Similarity=0.184  Sum_probs=50.1

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-----ccCC----------------Ccce
Q 019380          184 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYP----------------DHML  241 (342)
Q Consensus       184 l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~----------------~~~~  241 (342)
                      +..-....+++.+|.+++.+            . .+|||||. .||+.+|.     ...+                ....
T Consensus        67 v~~~~~E~~lL~~F~~~i~~------------~-~~iig~N~~~FDlpyl~~R~~~~gi~~~~~~~~~~~~~~~~~g~~~  133 (204)
T cd05783          67 VEFFDSEKELIREAFKIISE------------Y-PIVLTFNGDNFDLPYLYNRALKLGIPKEEIPIYLKRDYATLKHGIH  133 (204)
T ss_pred             EEecCCHHHHHHHHHHHHhc------------C-CEEEEeCCCCcCHHHHHHHHHHhCCChhhCceeecCCceeccCcEE
Confidence            33446789999999999932            3 48999995 57999987     1122                1234


Q ss_pred             eeccccccc-c-----c-cCCCCccHHHHHHHHhCCc
Q 019380          242 RDTAKYRPL-M-----K-TNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       242 ~Dt~~l~~~-~-----~-~~~~~~~L~~l~~~~~~~~  271 (342)
                      +|...+... .     + ....+++|+.+|+.+||..
T Consensus       134 iDl~~~~~~~~~~~~~~~~~~~~~~L~~Va~~~lg~~  170 (204)
T cd05783         134 IDLYKFFSNRAIQVYAFGNKYREYTLDAVAKALLGEG  170 (204)
T ss_pred             eECHHHhhccchhhhhhccccccCcHHHHHHHhcCCC
Confidence            565443322 1     1 1346899999999998876

The 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal proteins. B1 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B1displays thermostable polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family-B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Family-B DNA polymerases from thermophilic archaea are uniq

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=96.80  E-value=0.00077  Score=38.30  Aligned_cols=23  Identities=30%  Similarity=0.504  Sum_probs=22.0

Q ss_pred             cccccccccccCCHHHHHHHHhh
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      ||+|..|++.|.+...|..|++.
T Consensus         1 ~~~C~~C~~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    1 PFECDECGKTFSSLSALREHKRS   23 (27)
T ss_dssp             SEEETTTTEEESSHHHHHHHHCT
T ss_pred             CCCCCccCCccCChhHHHHHhHH
Confidence            68999999999999999999988

>smart00474 35EXOc 3'-5' exonuclease

Probab=96.65  E-value=0.0065  Score=50.61  Aligned_cols=89  Identities=24%  Similarity=0.385  Sum_probs=63.0

Q ss_pred             HHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc---ccCCCcceeeccccccccccCCCCccHHHHHHHHhCC
Q 019380          194 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR---MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGY  270 (342)
Q Consensus       194 ~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~---~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~  270 (342)
                      .+.+.+++.            +.+...||||+.+|+.+|.   +..+  .+.|++..+..+.|....++|+.++..|+|.
T Consensus        64 ~~~l~~~l~------------~~~~~kv~~d~k~~~~~L~~~gi~~~--~~~D~~laayll~p~~~~~~l~~l~~~~l~~  129 (172)
T smart00474       64 LEILKDLLE------------DETITKVGHNAKFDLHVLARFGIELE--NIFDTMLAAYLLLGGPSKHGLATLLKEYLGV  129 (172)
T ss_pred             HHHHHHHhc------------CCCceEEEechHHHHHHHHHCCCccc--chhHHHHHHHHHcCCCCcCCHHHHHHHHhCC
Confidence            455677772            2556899999999999996   2222  2489998888777766546999999999888


Q ss_pred             cCCCC-C----------C----CcHHHHHHHHHHHHHHHhh
Q 019380          271 DIQSG-V----------H----DPYEDCVSVMRLYKRFRRQ  296 (342)
Q Consensus       271 ~~~~~-~----------H----~A~~Da~~t~~l~~~~~~~  296 (342)
                      .+... .          .    -|..||.++.+|+..+.++
T Consensus       130 ~~~~~~~~~~~~~~~l~~~~~~ya~~~a~~~~~L~~~l~~~  170 (172)
T smart00474      130 ELDKEEQKSDWGARPLSEEQLQYAAEDADALLRLYEKLEKE  170 (172)
T ss_pred             CCCcccCccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            74310 0          0    1556677788887777655

3\' -5' exonuclease proofreading domain present in DNA polymerase I, Werner syndrome helicase, RNase D and other enzymes

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.60  E-value=0.0012  Score=35.93  Aligned_cols=22  Identities=32%  Similarity=0.581  Sum_probs=18.3

Q ss_pred             ccccccccCChhhHHHHHhhcC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      |+.|++.|.....|+.|++.||
T Consensus         3 C~~C~~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    3 CPICGKSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             -SSTS-EESSHHHHHHHHHHHS
T ss_pred             CcCCCCcCCcHHHHHHHHHhhC
Confidence            7899999999999999998875

...

>PF04857 CAF1: CAF1 family ribonuclease; InterPro: IPR006941 CAF1 is an RNase of the DEDD superfamily, and a subunit of the Ccr4-Not complex that mediates 3' to 5' mRNA deadenylation

Probab=96.39  E-value=0.0067  Score=55.01  Aligned_cols=72  Identities=22%  Similarity=0.170  Sum_probs=55.2

Q ss_pred             CCeEEEeeCchhhhhhcc-------------------ccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcC----
Q 019380          216 KARLLVGHGLEHDLDSLR-------------------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDI----  272 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~-------------------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~----  272 (342)
                      ...+|||||.-.|+.+|-                   .-+|.  ++||..++....  ....+|+.|+..+ +...    
T Consensus       148 ~~~p~Vghn~~~Dl~~l~~~f~~~LP~t~~eF~~~~~~~FP~--i~DtK~la~~~~--~~~~~L~~l~~~l-~~~~~~~~  222 (262)
T PF04857_consen  148 SKKPIVGHNGLYDLMYLYKKFIGPLPETLEEFKELLRELFPR--IYDTKYLAEECP--GKSTSLQELAEEL-GIRRNPSS  222 (262)
T ss_dssp             C-SEEEESSTHHHHHHHHHHHTTS--SSHHHHHHHHHHHSSS--EEEHHHHHTSTT--TS-SSHHHHHHHT-TSTT----
T ss_pred             cCCcEEEeChHhHHHHHHHHhcCCCCCCHHHHHHHHHHHCcc--cccHHHHHHhcc--ccccCHHHHHHHh-CCCccccc
Confidence            458999999999999866                   11455  889988887664  3467899999988 6653    


Q ss_pred             -------------------CCC-CCCcHHHHHHHHHHHHH
Q 019380          273 -------------------QSG-VHDPYEDCVSVMRLYKR  292 (342)
Q Consensus       273 -------------------~~~-~H~A~~Da~~t~~l~~~  292 (342)
                                         .+. .|.|=.||.+|+.+|.+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~HeAGyDA~mTg~~F~~  262 (262)
T PF04857_consen  223 ISSPEGFPSYDEEKNNFPMFGEKAHEAGYDAYMTGCVFIK  262 (262)
T ss_dssp             EEE-TTS-------------SS-TTSHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccCCCCCCCcchHHHHHHHHHcC
Confidence                               233 89999999999999864

The major pathways of mRNA turnover in eukaryotes initiate with shortening of the poly(A) tail. CAF1 P39008 from SWISSPROT encodes a critical component of the major cytoplasmic deadenylase in yeast. Caf1p is required for normal mRNA deadenylation in vivo and localises to the cytoplasm. Caf1p copurifies with a Ccr4p-dependent poly(A)-specific exonuclease activity. Some members of this family contain a single-stranded nucleic acid binding domain, R3H.; GO: 0005634 nucleus; PDB: 3D45_B 1UG8_A 2D5R_A 2A1S_C 2A1R_A 2FC6_A 1UOC_A 3G10_A 2P51_A 3G0Z_A.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=96.37  E-value=0.0038  Score=42.02  Aligned_cols=36  Identities=25%  Similarity=0.537  Sum_probs=23.4

Q ss_pred             cccccccccccCCHHHHHHHHhhhccCCCC-C-ccccCcc
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQ-P-KCAVCQK   51 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~-~-~C~~C~~   51 (342)
                      .|.||.|++. .....|..|.... |..+. . .|++|..
T Consensus         2 ~f~CP~C~~~-~~~~~L~~H~~~~-H~~~~~~v~CPiC~~   39 (54)
T PF05605_consen    2 SFTCPYCGKG-FSESSLVEHCEDE-HRSESKNVVCPICSS   39 (54)
T ss_pred             CcCCCCCCCc-cCHHHHHHHHHhH-CcCCCCCccCCCchh
Confidence            4889999995 4567799998663 55432 2 4555543

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase

Probab=96.26  E-value=0.044  Score=48.61  Aligned_cols=39  Identities=13%  Similarity=0.106  Sum_probs=29.3

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCch-hhhhhcc
Q 019380          184 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR  233 (342)
Q Consensus       184 l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~  233 (342)
                      +....+..+++.+|.++|...           .-.+|+|||+. ||+.+|.
T Consensus        65 v~~~~~E~eLL~~f~~~i~~~-----------DPDii~GyN~~~FDl~yL~  104 (230)
T cd05777          65 VFSFETEEELLLAWRDFVQEV-----------DPDIITGYNICNFDLPYLL  104 (230)
T ss_pred             EEEECCHHHHHHHHHHHHHhc-----------CCCEEEEecCCCCCHHHHH
Confidence            334568899999999999432           22599999965 5999876

The 3'-5' exonuclease domain of eukaryotic DNA polymerase delta. DNA polymerase delta is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand. It is also implicated in mismatch repair (MMR) and base excision repair (BER). The catalytic subunit displays both polymerase and 3'-5' exonuclease activities. The exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=96.20  E-value=0.0019  Score=58.23  Aligned_cols=69  Identities=20%  Similarity=0.372  Sum_probs=44.1

Q ss_pred             CCCcccccc--cccccCCHHHHHHHHhhhccCCCCC---ccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccc
Q 019380           11 STARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP---KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCM   85 (342)
Q Consensus        11 ~~~~~~C~~--C~k~f~~~~~L~~H~~~~~H~~~~~---~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~   85 (342)
                      ++|||+|++  |.|.|+...-|+=|+.- .|..++.   .-++--..|.-       ..+||.            |++|+
T Consensus       346 d~KpykCpV~gC~K~YknqnGLKYH~lh-GH~~~~~~~~p~p~~~~~F~~-------~~KPYr------------CevC~  405 (423)
T COG5189         346 DGKPYKCPVEGCNKKYKNQNGLKYHMLH-GHQNQKLHENPSPEKMNIFSA-------KDKPYR------------CEVCD  405 (423)
T ss_pred             cCceecCCCCCchhhhccccchhhhhhc-cccCcccCCCCCccccccccc-------cCCcee------------ccccc
Confidence            569999964  99999999999999973 3543322   11111111210       034554            57788


Q ss_pred             cccCChhhHHHHHh
Q 019380           86 NIFDSPSSLIKHKE   99 (342)
Q Consensus        86 k~F~~~~~L~~H~~   99 (342)
                      |.|+....|+.|++
T Consensus       406 KRYKNlNGLKYHr~  419 (423)
T COG5189         406 KRYKNLNGLKYHRK  419 (423)
T ss_pred             hhhccCccceeccc
Confidence            88888888888864

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.13  E-value=0.0035  Score=40.77  Aligned_cols=27  Identities=22%  Similarity=0.531  Sum_probs=21.1

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~  106 (342)
                      .|++|+..+.+..+|++|++.+|+.+|
T Consensus        26 tCP~C~a~~~~srnLrRHle~~H~~k~   52 (54)
T PF09237_consen   26 TCPICGAVIRQSRNLRRHLEIRHFKKP   52 (54)
T ss_dssp             E-TTT--EESSHHHHHHHHHHHTTTS-
T ss_pred             CCCcchhhccchhhHHHHHHHHhcccC
Confidence            489999999999999999999998876

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins

Probab=96.12  E-value=0.021  Score=49.51  Aligned_cols=94  Identities=19%  Similarity=0.224  Sum_probs=63.9

Q ss_pred             ChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeC-chhhhhhcc-------ccCCC-----------------cceee
Q 019380          189 PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR-------MNYPD-----------------HMLRD  243 (342)
Q Consensus       189 ~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~-------~~~~~-----------------~~~~D  243 (342)
                      ...+++.+|.+++..            .+-.||+|| -.||+.+|.       +..|.                 ..-+|
T Consensus        36 ~E~~lL~~F~~~~~~------------~~p~LVs~NG~~FDlP~L~~Ral~~gi~~p~~~~~~~k~WenY~~Ry~~~H~D  103 (209)
T PF10108_consen   36 DEKELLQDFFDLVEK------------YNPQLVSFNGRGFDLPVLCRRALIHGISAPRYLDIGNKPWENYRNRYSERHLD  103 (209)
T ss_pred             CHHHHHHHHHHHHHh------------CCCeEEecCCccCCHHHHHHHHHHhCCCCchhhhcCCCCccccccccCccccc
Confidence            378899999999942            344799999 678999988       22222                 12356


Q ss_pred             ccccccccccCCCCccHHHHHHHHhCCcCCCCCCCc------------------HHHHHHHHHHHHHHHhh
Q 019380          244 TAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDP------------------YEDCVSVMRLYKRFRRQ  296 (342)
Q Consensus       244 t~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~A------------------~~Da~~t~~l~~~~~~~  296 (342)
                      ++.+.... +.....+|+.||..+ |++-+.+.+-+                  ..|+.+|+.||.++.--
T Consensus       104 Lmd~l~~~-g~~~~~sLd~la~~l-giPgK~~idGs~V~~~y~~g~i~~I~~YCe~DVl~T~~lylR~~~~  172 (209)
T PF10108_consen  104 LMDLLSFY-GAKARTSLDELAALL-GIPGKDDIDGSQVAELYQEGDIDEIREYCEKDVLNTYLLYLRFELL  172 (209)
T ss_pred             HHHHHhcc-CccccCCHHHHHHHc-CCCCCCCCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65442222 134578999999988 98854332211                  34999999999998764

>PHA00732 hypothetical protein

Probab=96.07  E-value=0.0047  Score=45.03  Aligned_cols=19  Identities=26%  Similarity=0.662  Sum_probs=9.7

Q ss_pred             ccccCccccCChhhhhhhc
Q 019380           45 KCAVCQKLSKSFESLREHL   63 (342)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~   63 (342)
                      .|..|++.|.+.++|..|+
T Consensus         3 ~C~~Cgk~F~s~s~Lk~H~   21 (79)
T PHA00732          3 KCPICGFTTVTLFALKQHA   21 (79)
T ss_pred             cCCCCCCccCCHHHHHHHh
Confidence            3555555555555555554

>smart00355 ZnF_C2H2 zinc finger

Probab=96.04  E-value=0.0061  Score=33.59  Aligned_cols=22  Identities=45%  Similarity=0.760  Sum_probs=20.6

Q ss_pred             ccccccccccCCHHHHHHHHhh
Q 019380           15 HKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        15 ~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      |+|+.|++.|.....|..|++.
T Consensus         1 ~~C~~C~~~f~~~~~l~~H~~~   22 (26)
T smart00355        1 YRCPECGKVFKSKSALKEHMRT   22 (26)
T ss_pred             CCCCCCcchhCCHHHHHHHHHH
Confidence            6899999999999999999987

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=95.93  E-value=0.0053  Score=46.45  Aligned_cols=75  Identities=25%  Similarity=0.410  Sum_probs=20.7

Q ss_pred             cccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCccc-CCcccccccccCChhhH
Q 019380           16 KCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFS-DRGCNLCMNIFDSPSSL   94 (342)
Q Consensus        16 ~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~-~~~C~~C~k~F~~~~~L   94 (342)
                      +|..|+..|.....|..|+... |.-..+..    ..+.....+..+...         ... ...|..|++.|.....|
T Consensus         1 ~C~~C~~~f~~~~~l~~H~~~~-H~~~~~~~----~~l~~~~~~~~~~~~---------~~~~~~~C~~C~~~f~s~~~l   66 (100)
T PF12756_consen    1 QCLFCDESFSSVDDLLQHMKKK-HGFDIPDQ----KYLVDPNRLLNYLRK---------KVKESFRCPYCNKTFRSREAL   66 (100)
T ss_dssp             --------------------------------------------------------------SSEEBSSSS-EESSHHHH
T ss_pred             Cccccccccccccccccccccc-cccccccc----ccccccccccccccc---------ccCCCCCCCccCCCCcCHHHH
Confidence            5899999999999999999653 44332211    111122222222110         001 12589999999999999


Q ss_pred             HHHHhhcCCC
Q 019380           95 IKHKEACSLS  104 (342)
Q Consensus        95 ~~H~~~h~~~  104 (342)
                      ..|++.+...
T Consensus        67 ~~Hm~~~~H~   76 (100)
T PF12756_consen   67 QEHMRSKHHK   76 (100)
T ss_dssp             HHHHHHTTTT
T ss_pred             HHHHcCccCC
Confidence            9999975433

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=95.88  E-value=0.0047  Score=34.96  Aligned_cols=24  Identities=33%  Similarity=0.545  Sum_probs=20.9

Q ss_pred             cccccccccCChhhHHHHHhhcCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~  103 (342)
                      .|..|++.|.....|..|++.|+.
T Consensus         3 ~C~~C~~~F~~~~~l~~H~~~h~~   26 (27)
T PF13912_consen    3 ECDECGKTFSSLSALREHKRSHCS   26 (27)
T ss_dssp             EETTTTEEESSHHHHHHHHCTTTT
T ss_pred             CCCccCCccCChhHHHHHhHHhcC
Confidence            378999999999999999988864

>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins

Probab=95.86  E-value=0.037  Score=46.61  Aligned_cols=83  Identities=20%  Similarity=0.227  Sum_probs=59.7

Q ss_pred             CCeEEEeeCchhhhhhccc--cCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCC------C---------CC
Q 019380          216 KARLLVGHGLEHDLDSLRM--NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG------V---------HD  278 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~~--~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~------~---------H~  278 (342)
                      .+...||||+.+|+.+|..  ......+.|++..+..+.|... .+|++|++.|+|..+...      .         +-
T Consensus        63 ~~i~kv~~d~K~~~~~L~~~~gi~~~~~~D~~laayLl~p~~~-~~l~~l~~~~l~~~~~~~~~~~~w~~~~l~~~~~~y  141 (178)
T cd06142          63 PNIVKVFHAAREDLELLKRDFGILPQNLFDTQIAARLLGLGDS-VGLAALVEELLGVELDKGEQRSDWSKRPLTDEQLEY  141 (178)
T ss_pred             CCceEEEeccHHHHHHHHHHcCCCCCCcccHHHHHHHhCCCcc-ccHHHHHHHHhCCCCCcccccccCCCCCCCHHHHHH
Confidence            5678999999999999852  2223456899887777777544 599999999988863211      0         12


Q ss_pred             cHHHHHHHHHHHHHHHhhhhh
Q 019380          279 PYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       279 A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      |..||.++.+|+..+.++.++
T Consensus       142 aa~~a~~l~~L~~~l~~~L~e  162 (178)
T cd06142         142 AALDVRYLLPLYEKLKEELEE  162 (178)
T ss_pred             HHHhHHHHHHHHHHHHHHHHH
Confidence            566788888888888877644

Ribonuclease (RNase) D is a bacterial enzyme involved in the maturation of small stable RNAs and the 3' maturation of tRNA. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. In vivo, RNase D only becomes essential upon removal of other ribonucleases. Eukaryotic RNase D homologs include yeast Rrp6p, human PM/Scl-100, and the Drosophila melanogaster egalitarian protein.

>PRK05762 DNA polymerase II; Reviewed

Probab=95.76  E-value=0.058  Score=56.61  Aligned_cols=99  Identities=18%  Similarity=0.258  Sum_probs=64.8

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCch-hhhhhcc-------ccC--------------CC---
Q 019380          184 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR-------MNY--------------PD---  238 (342)
Q Consensus       184 l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~-------~~~--------------~~---  238 (342)
                      +...++..+++.+|.+++.+.           .-.||+|||+. ||+.+|.       +..              +.   
T Consensus       197 v~~~~sE~~LL~~F~~~i~~~-----------DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~GR~~~~~~~~~~~~~~~  265 (786)
T PRK05762        197 LEYVADEKALLEKFNAWFAEH-----------DPDVIIGWNVVQFDLRLLQERAERYGIPLRLGRDGSELEWREHPFRSG  265 (786)
T ss_pred             EEEcCCHHHHHHHHHHHHHhc-----------CCCEEEEeCCCCCcHHHHHHHHHHhCCCcccCcCCCccccccCCCCCC
Confidence            455678899999999999543           22599999955 7999987       111              00   


Q ss_pred             --------cceeeccccccccccCCCCccHHHHHHHHhCCcCCC-CCC-------------------CcHHHHHHHHHHH
Q 019380          239 --------HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS-GVH-------------------DPYEDCVSVMRLY  290 (342)
Q Consensus       239 --------~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~-~~H-------------------~A~~Da~~t~~l~  290 (342)
                              ..++|+..+.+.......+++|+.+|..+||..... ..+                   -.+.||..|.+|+
T Consensus       266 ~~~~~i~GRv~lDl~~~~k~~~~~l~sysL~~Va~~~Lg~~K~~~d~~~~~~eI~~~~~~~~~~l~~Y~l~Da~lt~~L~  345 (786)
T PRK05762        266 YGFASVPGRLVLDGIDALKSATWVFDSFSLEYVSQRLLGEGKAIDDPYDRMDEIDRRFAEDKPALARYNLKDCELVTRIF  345 (786)
T ss_pred             cceEEEeeEEEEEHHHHHHHhhccCCCCCHHHHHHHHhCCCeeccCccccHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence                    113444444333332456899999999998865321 111                   1367999999998


Q ss_pred             HHH
Q 019380          291 KRF  293 (342)
Q Consensus       291 ~~~  293 (342)
                      .++
T Consensus       346 ~kl  348 (786)
T PRK05762        346 EKT  348 (786)
T ss_pred             HHh
Confidence            854

>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases

Probab=95.75  E-value=0.016  Score=50.57  Aligned_cols=69  Identities=20%  Similarity=0.249  Sum_probs=47.6

Q ss_pred             ChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-------ccCCC----------------cceeec
Q 019380          189 PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNYPD----------------HMLRDT  244 (342)
Q Consensus       189 ~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~~~----------------~~~~Dt  244 (342)
                      +..+++.+|.++|.+            .+-+|||||. .||+.+|.       +..|.                ...+|+
T Consensus        77 ~E~elL~~F~~~i~~------------~~p~lv~yNg~~FDlP~L~~Ra~~~gi~~p~~~~~~~~~~~y~~r~~~~h~DL  144 (208)
T cd05782          77 DEKELLEDFFQLIEK------------KNPRLVSFNGRGFDLPVLHLRALIHGVSAPAYFDLGNKDWNYRNRYSERHLDL  144 (208)
T ss_pred             CHHHHHHHHHHHHHH------------hCCEEEecCCCcCCHHHHHHHHHHhCCCCccccCcccchhhccCcCCCCcccH
Confidence            457899999999943            2348999996 78999998       22221                125676


Q ss_pred             cccccccccCCCCccHHHHHHHHhCCc
Q 019380          245 AKYRPLMKTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       245 ~~l~~~~~~~~~~~~L~~l~~~~~~~~  271 (342)
                      ..+.+... ...+++|+.+|..+ |++
T Consensus       145 ~~~~~~~~-~~~~~~L~~va~~l-G~~  169 (208)
T cd05782         145 MDLLAFYG-ARARASLDLLAKLL-GIP  169 (208)
T ss_pred             HHHHhccC-ccCCCCHHHHHHHh-CCC
Confidence            66544322 24689999999866 885

A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.

>PHA02528 43 DNA polymerase; Provisional

Probab=95.57  E-value=0.091  Score=55.45  Aligned_cols=160  Identities=14%  Similarity=0.053  Sum_probs=85.6

Q ss_pred             CCCcceecccccccc-c-CCCc--ccccceEEeecCCCCeEEeeecCCCCCccccccccC--CCCHhhhcCCCChHHHHH
Q 019380          122 RGPKAVAMDCEMVGG-G-SNGT--LDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVT--GLTEEDIKNAMPLKEVKD  195 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~-~-~~~~--~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~--GIt~e~l~~~~~~~~v~~  195 (342)
                      +..++++||+|++.. + ++..  ...+..+++.+..+...+-..+....+.........  ......+.-.++..+++.
T Consensus       104 p~lrv~s~DIE~~~~~gfP~p~~~~d~IisIsl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~sE~eLL~  183 (881)
T PHA02528        104 SKIRIANLDIEVTAEDGFPDPEEAKYEIDAITHYDSIDDRFYVFDLGSVEEWDAKGDEVPQEILDKVVYMPFDTEREMLL  183 (881)
T ss_pred             CCccEEEEEEEECCCCCCCCcccCCCcEEEEEEecCCCCEEEEEEecCcccccccCCcccccccCCeeEEEcCCHHHHHH
Confidence            567789999999752 1 2222  222366666655555422222211111000000000  001111122467889999


Q ss_pred             HHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc------ccC------C-Cc----------------------
Q 019380          196 KILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR------MNY------P-DH----------------------  239 (342)
Q Consensus       196 ~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~------~~~------~-~~----------------------  239 (342)
                      +|.+|+.+.           .-.||+|||+ .||+.+|.      +..      . ..                      
T Consensus       184 ~F~~~i~~~-----------DPDII~GyNi~~FDlpYL~~Ra~~~lg~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~G  252 (881)
T PHA02528        184 EYINFWEEN-----------TPVIFTGWNVELFDVPYIINRIKNILGEKTAKRLSPWGKVKERTIENMYGREEIAYDISG  252 (881)
T ss_pred             HHHHHHHHh-----------CCcEEEecCCccCCHHHHHHHHHHHcCcccccccccccccccccccccccccceeEEEcc
Confidence            999999543           2259999995 47998876      110      0 00                      


Q ss_pred             -ceeecccccccc-ccCCCCccHHHHHHHHhCCcCCCC----------------CCCcHHHHHHHHHHHHH
Q 019380          240 -MLRDTAKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSG----------------VHDPYEDCVSVMRLYKR  292 (342)
Q Consensus       240 -~~~Dt~~l~~~~-~~~~~~~~L~~l~~~~~~~~~~~~----------------~H~A~~Da~~t~~l~~~  292 (342)
                       .++|...+.+.+ +....+|+|+.+|+.+||..-..-                .+-.+.||..+.+|+.+
T Consensus       253 Rv~lD~~dl~k~~~~~~l~SYsLe~VA~~~LG~~K~d~~~~eI~~l~~~d~~~l~~Ynl~Da~Lv~~L~~k  323 (881)
T PHA02528        253 ISILDYLDLYKKFTFTNQPSYRLDYIAEVELGKKKLDYSDGPFKKFRETDHQKYIEYNIIDVELVDRLDDK  323 (881)
T ss_pred             eEEEeHHHHHHHhhhcccccCCHHHHHHHHhCCCCccCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence             012222222221 224568999999999989763321                12235589999999888

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=95.46  E-value=0.0075  Score=33.39  Aligned_cols=22  Identities=27%  Similarity=0.640  Sum_probs=20.1

Q ss_pred             ccccccccccCCHHHHHHHHhh
Q 019380           15 HKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        15 ~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      |.|..|+++|.+...++.|++.
T Consensus         1 ~~C~~C~~~f~s~~~~~~H~~s   22 (25)
T PF12874_consen    1 FYCDICNKSFSSENSLRQHLRS   22 (25)
T ss_dssp             EEETTTTEEESSHHHHHHHHTT
T ss_pred             CCCCCCCCCcCCHHHHHHHHCc
Confidence            6799999999999999999976

>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair]

Probab=95.44  E-value=0.047  Score=54.38  Aligned_cols=95  Identities=21%  Similarity=0.189  Sum_probs=72.4

Q ss_pred             HHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccccCC-CcceeeccccccccccCCCCccHHHHHHHHhCCc
Q 019380          193 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP-DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       193 v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~-~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  271 (342)
                      +...+..|+            .+.+...||||+.+|+.+|...-. .....||+...-.+.|+...+.|++|+..|++..
T Consensus        66 ~~~~l~~~l------------~~~~~~kv~~~~K~d~~~l~~~Gi~~~~~~DtmlasYll~~~~~~~~~~~l~~r~l~~~  133 (593)
T COG0749          66 VLAALKPLL------------EDEGIKKVGQNLKYDYKVLANLGIEPGVAFDTMLASYLLNPGAGAHNLDDLAKRYLGLE  133 (593)
T ss_pred             hHHHHHHHh------------hCcccchhccccchhHHHHHHcCCcccchHHHHHHHhccCcCcCcCCHHHHHHHhcCCc
Confidence            888889999            346778999999999999983332 2446799988888888878899999999997765


Q ss_pred             CCCC---------------------CCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          272 IQSG---------------------VHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       272 ~~~~---------------------~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      .-..                     .-.+..||.++.+|+..+..+..+
T Consensus       134 ~~~~~~i~~kg~~~~~~~~~~~~~~~~y~a~~a~~~~~L~~~l~~~l~~  182 (593)
T COG0749         134 TITFEDIAGKGKKQLTFADVKLEKATEYAAEDADATLRLESILEPELLK  182 (593)
T ss_pred             cchhHHhhccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            3211                     123567899999999988865443

>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase

Probab=95.35  E-value=0.1  Score=46.29  Aligned_cols=105  Identities=9%  Similarity=0.099  Sum_probs=63.4

Q ss_pred             CHhhhcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-----ccCC-------C--------
Q 019380          180 TEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYP-------D--------  238 (342)
Q Consensus       180 t~e~l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~-------~--------  238 (342)
                      ....+.-.+...+++.+|.+++..-           .-.||+|||+ .||+.+|-     +..+       +        
T Consensus        71 ~~~~v~~~~~E~~LL~~f~~~i~~~-----------DPDii~GyNi~~fd~~YL~~Ra~~l~~~~~~~~lgR~~~~~~~~  139 (231)
T cd05778          71 SGIPVEVVESELELFEELIDLVRRF-----------DPDILSGYEIQRSSWGYLIERAAALGIDDLLDEISRVPSDSNGK  139 (231)
T ss_pred             CCCeEEEeCCHHHHHHHHHHHHHHh-----------CCCEEEEeccccCcHHHHHHHHHHhCCcchhhhccCCCCCCccc
Confidence            3344555678889999999998443           2349999997 56888765     1000       0        


Q ss_pred             --------------------cceeeccccccccccCCCCccHHHHHHHHhCCcCCCCCCCcHHHHH------HHHHHHHH
Q 019380          239 --------------------HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCV------SVMRLYKR  292 (342)
Q Consensus       239 --------------------~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~------~t~~l~~~  292 (342)
                                          ..++|...+.+.- -...+|+|+.++..+||.....-.+..+.+..      ...++...
T Consensus       140 ~~~~~~~~g~~~~~~~~i~GRi~lD~~~~~r~~-~kl~sYsL~~V~~~~L~~~k~~~~~~~i~~~~~~~~~~~r~~v~~Y  218 (231)
T cd05778         140 FGDRDDEWGYTHTSGIKIVGRHILNVWRLMRSE-LALTNYTLENVVYHVLHQRIPLYSNKTLTEWYKSGSASERWRVLEY  218 (231)
T ss_pred             ccccccccccccCCceEEeeEEEeEhHHHHHHH-cCcccCCHHHHHHHHhCCCCCCCCHHHHHHHHHcCCHhHhHHHHHH
Confidence                                1112222222221 14568999999999999975544555555542      33445555


Q ss_pred             HHhh
Q 019380          293 FRRQ  296 (342)
Q Consensus       293 ~~~~  296 (342)
                      ++++
T Consensus       219 ~l~d  222 (231)
T cd05778         219 YLKR  222 (231)
T ss_pred             HHHH
Confidence            5544

The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition, DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are crucial for metal binding and catalysis.

>smart00355 ZnF_C2H2 zinc finger

Probab=95.33  E-value=0.013  Score=32.25  Aligned_cols=23  Identities=30%  Similarity=0.567  Sum_probs=19.9

Q ss_pred             cccccccccCChhhHHHHHhhcC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      .|+.|+++|.....|..|++.|.
T Consensus         2 ~C~~C~~~f~~~~~l~~H~~~H~   24 (26)
T smart00355        2 RCPECGKVFKSKSALKEHMRTHX   24 (26)
T ss_pred             CCCCCcchhCCHHHHHHHHHHhc
Confidence            37889999999999999998664

>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases

Probab=95.22  E-value=0.04  Score=46.51  Aligned_cols=93  Identities=19%  Similarity=0.213  Sum_probs=64.4

Q ss_pred             HHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc---ccCCCcceeeccccccccccCCCCccHHHHHHHHhC
Q 019380          193 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR---MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLG  269 (342)
Q Consensus       193 v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~---~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~  269 (342)
                      +...+.+++.            +.+...|+||+.+|+.+|.   +..+ ..+.||+..+-.+.|...+++|++|+..|++
T Consensus        44 ~~~~l~~~l~------------~~~~~ki~~d~K~~~~~l~~~gi~~~-~~~fDt~laaYLL~p~~~~~~l~~l~~~yl~  110 (178)
T cd06140          44 DLAALKEWLE------------DEKIPKVGHDAKRAYVALKRHGIELA-GVAFDTMLAAYLLDPTRSSYDLADLAKRYLG  110 (178)
T ss_pred             HHHHHHHHHh------------CCCCceeccchhHHHHHHHHCCCcCC-CcchhHHHHHHHcCCCCCCCCHHHHHHHHcC
Confidence            4555777772            2556799999999999996   2332 3468999988888887655799999999988


Q ss_pred             CcCCC-C-----C-------C-----CcHHHHHHHHHHHHHHHhhhh
Q 019380          270 YDIQS-G-----V-------H-----DPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       270 ~~~~~-~-----~-------H-----~A~~Da~~t~~l~~~~~~~~~  298 (342)
                      ..+.. .     .       .     -+..||.++..|+..+.++.+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~a~~l~~l~~~l~~~L~  157 (178)
T cd06140         111 RELPSDEEVYGKGAKFAVPDEEVLAEHLARKAAAIARLAPKLEEELE  157 (178)
T ss_pred             CCCcchHHhcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77321 0     0       0     134456667777777766654

Bacillus stearothermophilus-like Polymerase I (Pol I), a subgroup of the family-A DNA polymerases, contains an inactive DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase region. The exonuclease-like domain of these proteins possess the same fold as the Klenow fragment (KF) of Escherichia coli Pol I, but does not contain the four critical metal-binding residues necessary for activity. The function of this domain is unknown. It might act as a spacer between the polymerase and the 5'-3' exonuclease domains. Some members of this subgroup, such as those from Bacillus sphaericus and Thermus aquaticus, are thermostable DNA polymerases.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.15  E-value=0.021  Score=37.24  Aligned_cols=27  Identities=22%  Similarity=0.476  Sum_probs=17.3

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhh
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      ..+.|..|+.|+..+.+..+|.+|+..
T Consensus        20 ~S~~PatCP~C~a~~~~srnLrRHle~   46 (54)
T PF09237_consen   20 QSEQPATCPICGAVIRQSRNLRRHLEI   46 (54)
T ss_dssp             TTS--EE-TTT--EESSHHHHHHHHHH
T ss_pred             ccCCCCCCCcchhhccchhhHHHHHHH
Confidence            356678888888888888888888866

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>KOG1798 consensus DNA polymerase epsilon, catalytic subunit A [Replication, recombination and repair]

Probab=95.03  E-value=0.26  Score=53.38  Aligned_cols=179  Identities=15%  Similarity=0.134  Sum_probs=103.9

Q ss_pred             CCCCcceeccccccccc---CCCc-ccccceEEeecCCCCeEEe-eecCCCCCccccccccCCCCHhh------hcCCCC
Q 019380          121 CRGPKAVAMDCEMVGGG---SNGT-LDLCARVCLVDEDENVIFH-TYVQPQLPVTNYRYEVTGLTEED------IKNAMP  189 (342)
Q Consensus       121 ~~~~~~v~~D~Ettg~~---~~~~-~~il~~v~vv~~~~~~~~~-~lv~p~~~i~~~~~~i~GIt~e~------l~~~~~  189 (342)
                      .+...+.|||+|||-+.   +|.. .+|...--+||+.|..+.+ ..|..+      +..+.=-+.++      +-+.+.
T Consensus       243 radp~VlAFDIETtKlPLKFPDae~DqIMMISYMiDGqGfLItNREiVs~D------IedfEYTPKpE~eG~F~v~Ne~d  316 (2173)
T KOG1798|consen  243 RADPRVLAFDIETTKLPLKFPDAESDQIMMISYMIDGQGFLITNREIVSED------IEDFEYTPKPEYEGPFCVFNEPD  316 (2173)
T ss_pred             cCCceEEEEeeecccCCCCCCCcccceEEEEEEEecCceEEEechhhhccc------hhhcccCCccccccceEEecCCc
Confidence            35567899999999753   3332 2232233345666655432 222211      11111111111      235677


Q ss_pred             hHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchh-hhhhcc-------ccC----CC---------cceeeccccc
Q 019380          190 LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEH-DLDSLR-------MNY----PD---------HMLRDTAKYR  248 (342)
Q Consensus       190 ~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~-D~~~l~-------~~~----~~---------~~~~Dt~~l~  248 (342)
                      ...++.++.+-+.+.           +.+|+|.+|-+| |+.|+.       +.+    .+         .+....+.-+
T Consensus       317 Ev~Ll~RfFeHiq~~-----------kP~iivTyNGDFFDWPFve~Ra~~hGi~m~eEiGF~~D~~gEyks~~c~HmDcf  385 (2173)
T KOG1798|consen  317 EVGLLQRFFEHIQEV-----------KPTIIVTYNGDFFDWPFVEARAKIHGISMNEEIGFRRDSQGEYKSPFCIHMDCF  385 (2173)
T ss_pred             HHHHHHHHHHHHHhc-----------CCcEEEEecCccccchhhHHHHHhcCCCcchhcCceecccccccccceeehhhh
Confidence            788899999888554           568999999775 999988       111    01         1111122222


Q ss_pred             ccc----ccCCCCccHHHHHHHHhCCcCCCC----------------CCCcHHHHHHHHHHHHHHHhhhhhhhhhccCCC
Q 019380          249 PLM----KTNLVSHSLKYLTRTYLGYDIQSG----------------VHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQNT  308 (342)
Q Consensus       249 ~~~----~~~~~~~~L~~l~~~~~~~~~~~~----------------~H~A~~Da~~t~~l~~~~~~~~~~~~~~~~~~~  308 (342)
                      ++.    +-..++.+|+.+...=||...-.-                +--++.||.||..||.++..-+-  +.+     
T Consensus       386 rWVKRDSYLPqGSqgLKAVTkaKLGYdPvEvdPEdM~~~A~EkPQ~lasYSVSDAVATYyLYMkYVhPFI--FsL-----  458 (2173)
T KOG1798|consen  386 RWVKRDSYLPQGSQGLKAVTKAKLGYDPVEVDPEDMVRMAMEKPQTLASYSVSDAVATYYLYMKYVHPFI--FSL-----  458 (2173)
T ss_pred             hhhhhcccCCCcccchhHHHHHhhCCCcccCCHHHhhhhhhhCchhhhhcchHHHHHHHHHHHHHhhhHH--hhh-----
Confidence            322    334557889998887777763211                45678999999999999987642  111     


Q ss_pred             CCCCCchhhHHhhhCChhhhhhcc
Q 019380          309 TGSFDSYKYKELEKMSPNELYQIS  332 (342)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~~~~~~  332 (342)
                               --|.++.|+|.+.-.
T Consensus       459 ---------ctIIPl~PDevLRKG  473 (2173)
T KOG1798|consen  459 ---------CTIIPLNPDEVLRKG  473 (2173)
T ss_pred             ---------hhccccChHHHHhcC
Confidence                     115778888887643

>PTZ00166 DNA polymerase delta catalytic subunit; Provisional

Probab=95.01  E-value=0.12  Score=55.81  Aligned_cols=99  Identities=18%  Similarity=0.133  Sum_probs=62.6

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCch-hhhhhcc-----ccCC------C-------------
Q 019380          184 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR-----MNYP------D-------------  238 (342)
Q Consensus       184 l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~-----~~~~------~-------------  238 (342)
                      +.-..+..+++.+|.+++..-           .-.||+|||+. ||+.+|-     +..+      +             
T Consensus       324 V~~f~sE~eLL~~f~~~I~~~-----------DPDII~GYNi~~FDlpYL~~Ra~~l~i~~~~~lgR~~~~~~~~~~~~~  392 (1054)
T PTZ00166        324 VLSFETEKELLLAWAEFVIAV-----------DPDFLTGYNIINFDLPYLLNRAKALKLNDFKYLGRIKSTRSVIKDSKF  392 (1054)
T ss_pred             EEEeCCHHHHHHHHHHHHHhc-----------CCCEEEecCCcCCcHHHHHHHHHHhCCCchhhcCcccCCCcccccccc
Confidence            334567889999999998433           23599999975 7998876     1111      0             


Q ss_pred             -----------------cceeeccccccccccCCCCccHHHHHHHHhCCcCCCCCC-------------------CcHHH
Q 019380          239 -----------------HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVH-------------------DPYED  282 (342)
Q Consensus       239 -----------------~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H-------------------~A~~D  282 (342)
                                       ..++|+..+.+.- ....+|+|+.++..+||.....-.|                   -.+.|
T Consensus       393 ~~~~~g~~~~~~~~i~GR~~iDl~~~~~~~-~kl~sYsL~~Vs~~~Lg~~K~dv~~~~i~~~~~~~~~~~~~l~~Y~l~D  471 (1054)
T PTZ00166        393 SSKQMGTRESKEINIEGRIQFDVMDLIRRD-YKLKSYSLNYVSFEFLKEQKEDVHYSIISDLQNGSPETRRRIAVYCLKD  471 (1054)
T ss_pred             ccccccccccceeEeeeEEEEEHHHHHHHh-cCcCcCCHHHHHHHHhCCCCCCCCHHHHHHHHhcChhhHHHHHHHHHHH
Confidence                             1123333333322 1456899999999999976321121                   12458


Q ss_pred             HHHHHHHHHHHH
Q 019380          283 CVSVMRLYKRFR  294 (342)
Q Consensus       283 a~~t~~l~~~~~  294 (342)
                      |..+.+|+.++.
T Consensus       472 a~L~~~L~~kl~  483 (1054)
T PTZ00166        472 AILPLRLLDKLL  483 (1054)
T ss_pred             HHHHHHHHHHHh
Confidence            888888887764

>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase

Probab=94.58  E-value=0.06  Score=47.92  Aligned_cols=76  Identities=26%  Similarity=0.312  Sum_probs=52.1

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-----ccCCC-------------------
Q 019380          184 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYPD-------------------  238 (342)
Q Consensus       184 l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~~-------------------  238 (342)
                      +.-.....+++..|.++|...           .-.||||||+ .||+.+|-     +..+.                   
T Consensus        76 v~~~~~E~~LL~~f~~~i~~~-----------DPDiivG~Ni~~fdl~~L~~R~~~l~i~~ws~iGR~~~~~~~~~~~~~  144 (234)
T cd05776          76 VRIFENERALLNFFLAKLQKI-----------DPDVLVGHDLEGFDLDVLLSRIQELKVPHWSRIGRLKRSVWPKKKGGG  144 (234)
T ss_pred             EEEeCCHHHHHHHHHHHHhhc-----------CCCEEEeeccCCCCHHHHHHHHHHhCCCccccccccccccCccccccc
Confidence            334567889999999999543           2249999998 78999876     11110                   


Q ss_pred             ----------cceeeccccccccccCCCCccHHHHHHHHhCCc
Q 019380          239 ----------HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       239 ----------~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  271 (342)
                                ..++|+..+.+... ...+|+|.++|..+||..
T Consensus       145 ~~~~~~~~~GRl~~D~~~~~k~~~-~~~sY~L~~va~~~Lg~~  186 (234)
T cd05776         145 KFGERELTAGRLLCDTYLSAKELI-RCKSYDLTELSQQVLGIE  186 (234)
T ss_pred             cccccccccCchhhccHHHHHHHh-CCCCCChHHHHHHHhCcC
Confidence                      12345555444443 367899999999998985

The 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha. DNA polymerase alpha is a family-B DNA polymerase with a catalytic subunit that contains a DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (delta and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. It associates with DNA primase and is the only enzyme able to start DNA synthesis de novo. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are

>KOG4793 consensus Three prime repair exonuclease [Replication, recombination and repair]

Probab=94.35  E-value=0.067  Score=47.57  Aligned_cols=129  Identities=15%  Similarity=0.107  Sum_probs=80.2

Q ss_pred             eeecCCCCCccccccccCCCCHhhhc--CCCChHH-HHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc--
Q 019380          160 HTYVQPQLPVTNYRYEVTGLTEEDIK--NAMPLKE-VKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR--  233 (342)
Q Consensus       160 ~~lv~p~~~i~~~~~~i~GIt~e~l~--~~~~~~~-v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~--  233 (342)
                      ..++.|.....+...+++|++++-+.  ...-|+. +..-+..|+ ++.         ..---||+||- .+|+..|.  
T Consensus        70 svl~~p~~v~~p~aeeitgls~~~~~l~rr~~~D~dla~LL~afl-s~l---------p~p~CLVaHng~~~dfpil~qe  139 (318)
T KOG4793|consen   70 SVLGGPVPVTRPIAEEITGLSQPFLALQRRLAFDKDLAKLLTAFL-SRL---------PTPGCLVAHNGNEYDFPILAQE  139 (318)
T ss_pred             hhccCCcCCcChhhhhhcccccHHHHHHHHhhhhHHHHHHHHHHH-hcC---------CCCceEEeecCCccccHHHHHH
Confidence            45667777788889999999986654  3333444 444555555 222         14446899994 35666555  


Q ss_pred             -----ccCCC-cceeecccccccc--------cc-CCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhh
Q 019380          234 -----MNYPD-HMLRDTAKYRPLM--------KT-NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       234 -----~~~~~-~~~~Dt~~l~~~~--------~~-~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~  298 (342)
                           +..|. .-.+|+.......        .+ ....|+|..+-..|.+..-..+.|.+..|.-...-+|....++.-
T Consensus       140 la~lg~~lpq~lvcvdslpa~~ald~a~s~~tr~~~~~~~~l~~If~ry~~q~eppa~~~~e~d~~~l~~~fqf~~~ell  219 (318)
T KOG4793|consen  140 LAGLGYSLPQDLVCVDSLPALNALDRANSMVTRPEVRRMYSLGSIFLRYVEQREPPAGHVAEGDVNGLLFIFQFRINELL  219 (318)
T ss_pred             HHhcCccchhhhcCcchhHHHHHHhhhcCcccCCCCCcccccchHHHhhhcccCCCcceeeecccchhHHHHHHHHHHHH
Confidence                 44443 2224554432211        11 345789999888886764355689999998888877777766643

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=94.21  E-value=0.051  Score=36.45  Aligned_cols=52  Identities=27%  Similarity=0.382  Sum_probs=31.0

Q ss_pred             CccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCC
Q 019380           44 PKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        44 ~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~  103 (342)
                      +.|+.|++ ..+...|..|....+.-.  ++   ...||.|...++  .+|..|+..+|+
T Consensus         3 f~CP~C~~-~~~~~~L~~H~~~~H~~~--~~---~v~CPiC~~~~~--~~l~~Hl~~~H~   54 (54)
T PF05605_consen    3 FTCPYCGK-GFSESSLVEHCEDEHRSE--SK---NVVCPICSSRVT--DNLIRHLNSQHR   54 (54)
T ss_pred             cCCCCCCC-ccCHHHHHHHHHhHCcCC--CC---CccCCCchhhhh--hHHHHHHHHhcC
Confidence            47999999 455677888861111100  00   013677766544  488999987763

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins

Probab=94.18  E-value=0.056  Score=46.43  Aligned_cols=82  Identities=26%  Similarity=0.309  Sum_probs=57.1

Q ss_pred             CCeEEEeeCchhhhhhcc--ccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCC-------CCC--------C
Q 019380          216 KARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS-------GVH--------D  278 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~-------~~H--------~  278 (342)
                      .+...|+|++..|+..|.  .......+.|++..+..+.|. . .+|+.|+..|++..+..       +..        -
T Consensus        76 ~~i~kv~~d~K~~~~~L~~~~gi~~~~~fD~~laaYLL~p~-~-~~l~~l~~~yl~~~~~k~~~~~~~~~~~l~~~~~~y  153 (192)
T cd06147          76 PNILKVFHGADSDIIWLQRDFGLYVVNLFDTGQAARVLNLP-R-HSLAYLLQKYCNVDADKKYQLADWRIRPLPEEMIKY  153 (192)
T ss_pred             CCceEEEechHHHHHHHHHHhCCCcCchHHHHHHHHHhCCC-c-ccHHHHHHHHhCCCcchhhhccccccCCCCHHHHHH
Confidence            567899999999999985  222111238999988888887 4 49999999998776311       011        1


Q ss_pred             cHHHHHHHHHHHHHHHhhhhh
Q 019380          279 PYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       279 A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      +..||.++..|+..+..+.++
T Consensus       154 ~a~~a~~l~~L~~~L~~~L~e  174 (192)
T cd06147         154 AREDTHYLLYIYDRLRNELLE  174 (192)
T ss_pred             HHhhHHHHHHHHHHHHHHHHH
Confidence            445577778888888777644

Yeast Rrp6p and its human homolog, the polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100), are exosome-associated proteins involved in the degradation and processing of precursors to stable RNAs. Both proteins contain a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PM/Scl-100, an autoantigen present in the nucleolar compartment of the cell, reacts with autoantibodies produced by about 50% of patients with polymyositis-scleroderma overlap syndrome.

>TIGR00593 pola DNA polymerase I

Probab=94.16  E-value=0.087  Score=55.76  Aligned_cols=96  Identities=18%  Similarity=0.144  Sum_probs=69.6

Q ss_pred             ChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc---ccCCCcceeeccccccccccCCCCccHHHHHH
Q 019380          189 PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR---MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTR  265 (342)
Q Consensus       189 ~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~---~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~  265 (342)
                      +...+.+.|..++.            +.+...||||+.||+.+|.   +..+ ..+.||+..+-.+.|... .+|++|+.
T Consensus       362 ~~~~~~~~l~~~l~------------~~~~~~v~~n~K~d~~~l~~~gi~~~-~~~~Dt~la~yll~~~~~-~~l~~la~  427 (887)
T TIGR00593       362 LTILTDDKFARWLL------------NEQIKKIGHDAKFLMHLLKREGIELG-GVIFDTMLAAYLLDPAQV-STLDTLAR  427 (887)
T ss_pred             hhHHHHHHHHHHHh------------CCCCcEEEeeHHHHHHHHHhCCCCCC-CcchhHHHHHHHcCCCCC-CCHHHHHH
Confidence            35567778888883            3556789999999999997   2222 346899988888877544 59999999


Q ss_pred             HHhCCcCCC-------C----C-------CCcHHHHHHHHHHHHHHHhhhh
Q 019380          266 TYLGYDIQS-------G----V-------HDPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       266 ~~~~~~~~~-------~----~-------H~A~~Da~~t~~l~~~~~~~~~  298 (342)
                      .|++.....       +    .       .-|..||.+|.+||..+..+..
T Consensus       428 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~ya~~d~~~~~~L~~~l~~~l~  478 (887)
T TIGR00593       428 RYLVEELILDEKIGGKLAKFAFPPLEEATEYLARRAAATKRLAEELLKELD  478 (887)
T ss_pred             HHcCcccccHHHhccCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            998754211       0    0       1366789999999998887754

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>smart00486 POLBc DNA polymerase type-B family

Probab=93.57  E-value=0.53  Score=45.94  Aligned_cols=94  Identities=18%  Similarity=0.235  Sum_probs=60.7

Q ss_pred             CChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCch-hhhhhcc-----ccCC------C-----------------
Q 019380          188 MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR-----MNYP------D-----------------  238 (342)
Q Consensus       188 ~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~-----~~~~------~-----------------  238 (342)
                      ....+++.+|.+++...           ...+++|||.. ||+.+|.     +..+      +                 
T Consensus        67 ~~E~~lL~~f~~~i~~~-----------dpdii~g~N~~~FD~~~i~~R~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~  135 (471)
T smart00486       67 NNEKELLKAFLEFIKKY-----------DPDIIYGHNISNFDLPYIISRLEKLKIKPLSFIGRLKNIIDIKRKKPLFGSK  135 (471)
T ss_pred             CCHHHHHHHHHHHHHHh-----------CCCEEEeecCCCCCHHHHHHHHHHcCCCCHHHcCcCCCCCCcccccCccccc
Confidence            36788899999988432           23599999986 8999876     1110      0                 


Q ss_pred             ------------cceeeccccccccccCCCCccHHHHHHHHhCCcCCCCCC-------------------CcHHHHHHHH
Q 019380          239 ------------HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVH-------------------DPYEDCVSVM  287 (342)
Q Consensus       239 ------------~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H-------------------~A~~Da~~t~  287 (342)
                                  ...+|+..+.+.... ...++|+.++..+||.....-..                   -.+.||..+.
T Consensus       136 ~~~~~~~~~~~g~~~~Dl~~~~~~~~k-l~~~~L~~va~~~l~~~k~d~~~~~i~~~~~~~~~~~~~~~~Y~~~D~~l~~  214 (471)
T smart00486      136 SFGKTIKVKIKGRLVIDLYNLYKNKLK-LPSYKLDTVAEYLLGKEKDDLPYKDIPELYNLNYKLRDELLEYCIQDAVLTL  214 (471)
T ss_pred             cccccceeEeccEEEEEhHHHHHHHhC-cccCCHHHHHHHHhCCCCCCCCHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence                        133455555544433 57899999999998844221111                   1145888888


Q ss_pred             HHHHHH
Q 019380          288 RLYKRF  293 (342)
Q Consensus       288 ~l~~~~  293 (342)
                      +|+.++
T Consensus       215 ~l~~~l  220 (471)
T smart00486      215 KLFNKL  220 (471)
T ss_pred             HHHHHH
Confidence            888876

DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA polymerases in archaea, DNA polymerase II in e. coli, mitochondrial DNA polymerases and and virus DNA polymerases

>cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins

Probab=93.52  E-value=0.14  Score=41.54  Aligned_cols=55  Identities=20%  Similarity=0.190  Sum_probs=42.6

Q ss_pred             CCeEEEeeCchhhhhhccc---cCCCcceeeccccccccccCCCCccHHHHHHHHhCCc
Q 019380          216 KARLLVGHGLEHDLDSLRM---NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~~---~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  271 (342)
                      .+...|+||+..|+.+|..   ..+ ..+.|++..+-.+.|...+.+|++|+..|++..
T Consensus        52 ~~~~kv~~d~K~~~~~L~~~~~~~~-~~~~D~~laayLl~p~~~~~~l~~l~~~~l~~~  109 (150)
T cd09018          52 EKALKVGQNLKYDRGILLNYFIELR-GIAFDTMLEAYILNSVAGRWDMDSLVERWLGHK  109 (150)
T ss_pred             CCCceeeecHHHHHHHHHHcCCccC-CcchhHHHHHHHhCCCCCCCCHHHHHHHHhCCC
Confidence            5567899999999999862   222 346899988888877542359999999998877

DEDDy exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. They contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDy exonucleases are classified as such because of the presence of a specific YX(3)D pattern at ExoIII. The four conserved acidic residues serve as ligands for the two metal ions required for catalysis. This family of DEDDy exonucleases includes the proofreading domains of family A DNA polymerases, as well as RNases such as RNase D and yeast Rrp6p. The Egalitarian (Egl) and Bacillus-like DNA Polymerase I subfamilies do not possess a completely conserved YX(3)D pattern at the ExoIII motif. In addition, the Bacillus-like DNA polymerase I subfamily has inactive 3'-5' exonucle

>PRK04860 hypothetical protein; Provisional

Probab=93.52  E-value=0.031  Score=46.52  Aligned_cols=39  Identities=13%  Similarity=0.254  Sum_probs=31.6

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChh
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFE   57 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~   57 (342)
                      -+|.|. |++   ....+.+|.++  |+++++ .|..|++.|....
T Consensus       118 ~~Y~C~-C~~---~~~~~rrH~ri--~~g~~~YrC~~C~~~l~~~~  157 (160)
T PRK04860        118 FPYRCK-CQE---HQLTVRRHNRV--VRGEAVYRCRRCGETLVFKG  157 (160)
T ss_pred             EEEEcC-CCC---eeCHHHHHHHH--hcCCccEECCCCCceeEEec
Confidence            469998 987   66778999999  988876 9999998886543

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=93.51  E-value=0.02  Score=32.42  Aligned_cols=22  Identities=41%  Similarity=0.694  Sum_probs=18.4

Q ss_pred             ccccccccccCCHHHHHHHHhh
Q 019380           15 HKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        15 ~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      |.|..|++.|.+...+..|++.
T Consensus         2 ~~C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    2 FYCDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             CBBTTTTBBBSSHHHHHCCTTS
T ss_pred             CCcccCCCCcCCHHHHHHHHcc
Confidence            6788888888888888888765

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PHA02570 dexA exonuclease; Provisional

Probab=93.48  E-value=0.4  Score=41.74  Aligned_cols=100  Identities=18%  Similarity=0.130  Sum_probs=54.7

Q ss_pred             eecccccccccCCCcccccceEEeecCCCC-eEEeeecCCCCCcccccc--------------ccCCCCHhh---hc---
Q 019380          127 VAMDCEMVGGGSNGTLDLCARVCLVDEDEN-VIFHTYVQPQLPVTNYRY--------------EVTGLTEED---IK---  185 (342)
Q Consensus       127 v~~D~Ettg~~~~~~~~il~~v~vv~~~~~-~~~~~lv~p~~~i~~~~~--------------~i~GIt~e~---l~---  185 (342)
                      +.+|.||-|..++..+-.++++......+. ..|+.+|.....+.-...              .+-.=++|-   +.   
T Consensus         4 lMIDlETmG~~p~AaIisIgAV~Fdp~~~~g~tF~elV~~~~~~k~d~~sq~g~~~~d~~TI~WW~kQS~EAR~~L~~s~   83 (220)
T PHA02570          4 FIIDFETFGNTPDGAVIDLAVIAFEHDPHNPPTFEELVSRGRRIKFDLKSQKGKRLFDKSTIEWWKNQSPEARKNLKPSD   83 (220)
T ss_pred             EEEEeeccCCCCCceEEEEEEEEecCCCCccccHHHHhhcccccccchhhccCCCccCchHHHHHHhCCHHHHHhccCCC
Confidence            569999999987775544355554332332 246666653211111101              111112211   11   


Q ss_pred             CCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc
Q 019380          186 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR  233 (342)
Q Consensus       186 ~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~  233 (342)
                      +..++.+++.+|.+||.....       ......+=|-+..||+..|+
T Consensus        84 ~~~~l~~al~~F~~fi~~~~~-------~~~~~~vWgnG~sFD~~IL~  124 (220)
T PHA02570         84 EDVSTYEGHKKFFEYLEANGV-------DPWKSQGWCRGNSFDFPILV  124 (220)
T ss_pred             ccccHHHHHHHHHHHHHHcCC-------CccceeEecCCCccCHHHHH
Confidence            235799999999999953210       01224555667899999996

>KOG3657 consensus Mitochondrial DNA polymerase gamma, catalytic subunit [Replication, recombination and repair]

Probab=93.17  E-value=0.18  Score=51.58  Aligned_cols=85  Identities=22%  Similarity=0.314  Sum_probs=56.0

Q ss_pred             CCCeEEEeeCchhhhhhcc----ccCCCcceeecccccccccc-------------------------------------
Q 019380          215 GKARLLVGHGLEHDLDSLR----MNYPDHMLRDTAKYRPLMKT-------------------------------------  253 (342)
Q Consensus       215 ~~~~~lvgh~~~~D~~~l~----~~~~~~~~~Dt~~l~~~~~~-------------------------------------  253 (342)
                      .++.++||||+.||..-++    +.-....++||+.|--.+++                                     
T Consensus       239 ~ke~liVGHNVsfDRaRirEeY~i~~Sk~rFlDTMSlHia~~Gm~S~Qrplw~ka~k~k~a~~d~~~~ps~~d~~~pWL~  318 (1075)
T KOG3657|consen  239 GKEQLIVGHNVSFDRARIREEYNINGSKIRFLDTMSLHIAMSGMCSRQRPLWFKARKAKSAMYDSETNPSISDYDNPWLG  318 (1075)
T ss_pred             CCCceEEeccccchHHHHHHHHhccccceeeeechhhhhhhhccccccchhHhhhhhhhhhhhhcccCCchhhhhhhhhh
Confidence            3778999999999999988    22334778999865422211                                     


Q ss_pred             CCCCccHHHHHHHHhCCc-CCCCCCCcH--------------------HHHHHHHHHHHHHHhhhhh
Q 019380          254 NLVSHSLKYLTRTYLGYD-IQSGVHDPY--------------------EDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       254 ~~~~~~L~~l~~~~~~~~-~~~~~H~A~--------------------~Da~~t~~l~~~~~~~~~~  299 (342)
                      ....-||.++++.+.|++ ++....+..                    .|+.+|.++|.+++=.+.+
T Consensus       319 ~SS~NSL~dVhk~~c~~~~LdKt~Rd~Fvs~~~e~Ire~fq~L~~YCA~Dv~aThqVf~~lfP~Fle  385 (1075)
T KOG3657|consen  319 RSSLNSLVDVHKFHCGIDALDKTPRDSFVSGTKEQIRENFQPLMNYCARDVIATHQVFFRLFPLFLE  385 (1075)
T ss_pred             hhhhHHHHHHHHhhCCCCccccchHHhhhcCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence            011246778888887777 443322221                    2889999999888766543

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=93.08  E-value=0.073  Score=29.05  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=17.4

Q ss_pred             ccccccccccCCHHHHHHHHhhh
Q 019380           15 HKCVACYKQFKRKDHLIEHMKIS   37 (342)
Q Consensus        15 ~~C~~C~k~f~~~~~L~~H~~~~   37 (342)
                      |+|+.|+.... +..|.+|++.+
T Consensus         1 y~C~~C~y~t~-~~~l~~H~~~~   22 (24)
T PF13909_consen    1 YKCPHCSYSTS-KSNLKRHLKRH   22 (24)
T ss_dssp             EE-SSSS-EES-HHHHHHHHHHH
T ss_pred             CCCCCCCCcCC-HHHHHHHHHhh
Confidence            78999998887 88999999873

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=93.02  E-value=0.053  Score=29.85  Aligned_cols=21  Identities=33%  Similarity=0.680  Sum_probs=17.9

Q ss_pred             ccccccccCChhhHHHHHhhc
Q 019380           81 CNLCMNIFDSPSSLIKHKEAC  101 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h  101 (342)
                      |..|++.|.....|+.|++.+
T Consensus         3 C~~C~~~f~s~~~~~~H~~s~   23 (25)
T PF12874_consen    3 CDICNKSFSSENSLRQHLRSK   23 (25)
T ss_dssp             ETTTTEEESSHHHHHHHHTTH
T ss_pred             CCCCCCCcCCHHHHHHHHCcC
Confidence            788999999999999998754

>PHA02524 43A DNA polymerase subunit A; Provisional

Probab=93.01  E-value=0.57  Score=46.16  Aligned_cols=93  Identities=12%  Similarity=0.050  Sum_probs=58.2

Q ss_pred             CCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCch-hhhhhcc--------cc-------CCC-----------
Q 019380          186 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR--------MN-------YPD-----------  238 (342)
Q Consensus       186 ~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~--------~~-------~~~-----------  238 (342)
                      .-++..+++.+|.+|+.+-           .-.||+|||+. ||+.+|.        +.       +..           
T Consensus       176 ~f~sE~eLL~~F~~~i~~~-----------DPDIItGYNi~nFDlPYL~~Ra~~~lGi~~~~~~~~~Gr~~~~~s~~~~G  244 (498)
T PHA02524        176 PFEDEVDLLLNYIQLWKAN-----------TPDLVFGWNSEGFDIPYIITRITNILGEKAANQLSPYGKITSKTITNLYG  244 (498)
T ss_pred             EeCCHHHHHHHHHHHHHHh-----------CCCEEEeCCCcccCHHHHHHHHHHHhCCccccccccccccccccceeecC
Confidence            4578899999999999442           22599999954 7887765        10       100           


Q ss_pred             ---------cceeecccccccc-ccCCCCccHHHHHHHHhCCcCCCCCCC----------------cHHHHHHHHHHH
Q 019380          239 ---------HMLRDTAKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSGVHD----------------PYEDCVSVMRLY  290 (342)
Q Consensus       239 ---------~~~~Dt~~l~~~~-~~~~~~~~L~~l~~~~~~~~~~~~~H~----------------A~~Da~~t~~l~  290 (342)
                               ..++|...+.+.. +....+|+|+.++..+||.. ....|.                .+.||..+.+|+
T Consensus       245 ~~~~~~I~GRv~iDl~~l~kk~s~~~l~sYsL~~Vs~~~Lg~~-K~d~~~~I~~l~~~d~~rla~YclkDa~L~~~L~  321 (498)
T PHA02524        245 EKIIYKIHGIALMDYMDVFKKFSFTPMPDYKLGNVGYREVKAD-KLDYEGPINKFRKADHQRYVDYCVRDTDIILLID  321 (498)
T ss_pred             ceeEEEEeeEEEeEHHHHHHHhhhccCCCCCHHHHHHHhcCCc-cccchhhHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence                     1123334444433 33567899999999887765 222221                245777776665

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=92.95  E-value=0.073  Score=29.58  Aligned_cols=20  Identities=35%  Similarity=0.765  Sum_probs=15.5

Q ss_pred             cccccccccCChhhHHHHHhh
Q 019380           80 GCNLCMNIFDSPSSLIKHKEA  100 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~  100 (342)
                      .|+.||+.| ..+.|.+|++.
T Consensus         4 ~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    4 PCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             cCCCCCCEE-CHHHHHHHHHh
Confidence            378888888 57778888765

>COG3359 Predicted exonuclease [DNA replication, recombination, and repair]

Probab=92.40  E-value=0.41  Score=42.21  Aligned_cols=75  Identities=20%  Similarity=0.221  Sum_probs=43.2

Q ss_pred             CCeEEEeeC-chhhhhhcc------ccC-CCcceeeccccccccc-cCCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHH
Q 019380          216 KARLLVGHG-LEHDLDSLR------MNY-PDHMLRDTAKYRPLMK-TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSV  286 (342)
Q Consensus       216 ~~~~lvgh~-~~~D~~~l~------~~~-~~~~~~Dt~~l~~~~~-~~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t  286 (342)
                      ....||.+| ..||+.|++      +.. +...-+|..--.|.+. .....-+|+.+-+ .||+.-..  ---=.|+...
T Consensus       155 ~~~~lvsfNGkaFD~PfikR~v~~~~el~l~~~H~DL~h~~RRlwk~~l~~c~Lk~VEr-~LGi~R~e--dtdG~~~p~l  231 (278)
T COG3359         155 DFNMLVSFNGKAFDIPFIKRMVRDRLELSLEFGHFDLYHPSRRLWKHLLPRCGLKTVER-ILGIRREE--DTDGYDGPEL  231 (278)
T ss_pred             CcceEEEecCcccCcHHHHHHHhcccccCccccchhhhhhhhhhhhccCCCCChhhHHH-HhCccccc--cCCCcchHHH
Confidence            456888887 779999998      111 1133456655444443 2445788999766 55777321  1112355555


Q ss_pred             HHHHHHH
Q 019380          287 MRLYKRF  293 (342)
Q Consensus       287 ~~l~~~~  293 (342)
                      .++|.+.
T Consensus       232 yr~~~~~  238 (278)
T COG3359         232 YRLYRRY  238 (278)
T ss_pred             HHHHHHc
Confidence            5555555

>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair]

Probab=91.81  E-value=1.5  Score=46.18  Aligned_cols=77  Identities=19%  Similarity=0.237  Sum_probs=53.9

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCch-hhhhhcc-----ccCCC-------------------
Q 019380          184 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR-----MNYPD-------------------  238 (342)
Q Consensus       184 l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~-----~~~~~-------------------  238 (342)
                      +....+-.+++.+|.+++.+.           ...|+||||.. ||+.+|.     +..+.                   
T Consensus       205 v~~~~~e~e~l~~~~~~i~~~-----------dPdVIvgyn~~~fd~pyl~~Ra~~lgi~~~~gr~~~~~~~~~~~~~~~  273 (792)
T COG0417         205 VEVVISEAELLERFVELIREY-----------DPDVIVGYNGDNFDWPYLAERAERLGIPLRLGRDGSELRVRKSGFSSQ  273 (792)
T ss_pred             eEEecCHHHHHHHHHHHHHhc-----------CCCEEEeccCCcCChHHHHHHHHHhCCCccccccccccceeecccccc
Confidence            455567889999999999654           34699999988 8999987     11111                   


Q ss_pred             --cceeeccccccccccCCCCccHHHHHHHHhCCc
Q 019380          239 --HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD  271 (342)
Q Consensus       239 --~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~  271 (342)
                        ...+|...+.+.-......++|+..+..+++..
T Consensus       274 ~Gr~~iDl~~~~~~~~~~~~~ysl~~v~~~~l~~~  308 (792)
T COG0417         274 VGRLHIDLYPALRRRPLNLKSYSLEAVSEALLGEG  308 (792)
T ss_pred             cceEEEecHHHHhhhhcccccccHHHHHHHhcccc
Confidence              134566555553223456899999999997766

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=91.75  E-value=0.068  Score=30.19  Aligned_cols=20  Identities=30%  Similarity=0.695  Sum_probs=15.3

Q ss_pred             ccccccccCChhhHHHHHhh
Q 019380           81 CNLCMNIFDSPSSLIKHKEA  100 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~  100 (342)
                      |..|++.|.....+..|++.
T Consensus         4 C~~C~k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    4 CDACDKYFSSENQLKQHMKS   23 (27)
T ss_dssp             BTTTTBBBSSHHHHHCCTTS
T ss_pred             cccCCCCcCCHHHHHHHHcc
Confidence            67788888888888877754

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF13909 zf-H2C2_5: C2H2-type zinc-finger domain; PDB: 1X5W_A

Probab=91.37  E-value=0.1  Score=28.41  Aligned_cols=23  Identities=22%  Similarity=0.300  Sum_probs=17.2

Q ss_pred             cccccccccCChhhHHHHHhhcCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~  103 (342)
                      .|+.|+.+.+ +..|.+|++.+++
T Consensus         2 ~C~~C~y~t~-~~~l~~H~~~~H~   24 (24)
T PF13909_consen    2 KCPHCSYSTS-KSNLKRHLKRHHP   24 (24)
T ss_dssp             E-SSSS-EES-HHHHHHHHHHHHS
T ss_pred             CCCCCCCcCC-HHHHHHHHHhhCc
Confidence            3788888887 8899999998763

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=91.13  E-value=0.14  Score=28.79  Aligned_cols=22  Identities=18%  Similarity=0.427  Sum_probs=15.3

Q ss_pred             ccCCCCCcccCC--cccccccccC
Q 019380           68 SKAHCSGIFSDR--GCNLCMNIFD   89 (342)
Q Consensus        68 ~C~~C~k~f~~~--~C~~C~k~F~   89 (342)
                      .|+.|++.....  .|+.||..|.
T Consensus         2 ~CP~C~~~V~~~~~~Cp~CG~~F~   25 (26)
T PF10571_consen    2 TCPECGAEVPESAKFCPHCGYDFE   25 (26)
T ss_pred             cCCCCcCCchhhcCcCCCCCCCCc
Confidence            467777666543  3888988875

Several members are annotated as putative helicases.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=91.08  E-value=0.19  Score=27.88  Aligned_cols=21  Identities=38%  Similarity=0.694  Sum_probs=16.8

Q ss_pred             ccccccccccCCHHHHHHHHhh
Q 019380           15 HKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        15 ~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      .+|+.||++| ....|..|+.+
T Consensus         3 ~~C~~CgR~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    3 VPCPICGRKF-NPDRLEKHEKI   23 (25)
T ss_pred             CcCCCCCCEE-CHHHHHHHHHh
Confidence            4799999999 56778888764

>smart00451 ZnF_U1 U1-like zinc finger

Probab=89.29  E-value=0.31  Score=29.06  Aligned_cols=23  Identities=22%  Similarity=0.355  Sum_probs=20.6

Q ss_pred             cccccccccccCCHHHHHHHHhh
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      +|.|+.|++.|.....+..|+..
T Consensus         3 ~~~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        3 GFYCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             CeEccccCCccCCHHHHHHHHCh
Confidence            68899999999999999999865

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>TIGR03491 RecB family nuclease, putative, TM0106 family

Probab=89.19  E-value=3.6  Score=40.49  Aligned_cols=89  Identities=19%  Similarity=0.248  Sum_probs=56.8

Q ss_pred             hHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc---ccCCC---------cceeecccccc-ccccCCC
Q 019380          190 LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR---MNYPD---------HMLRDTAKYRP-LMKTNLV  256 (342)
Q Consensus       190 ~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~---~~~~~---------~~~~Dt~~l~~-~~~~~~~  256 (342)
                      ..+++.+|.+|+...           .+..|+.+| .+...+|+   -.++.         .+++|...+.+ .......
T Consensus       328 E~~~~~~f~~~l~~~-----------~~~~i~hY~-~~e~~~l~rla~~~~~~~~~~~~l~~~~vDL~~~vr~~~~~p~~  395 (457)
T TIGR03491       328 EELAWQQFLQLLQSY-----------PDAPIYHYG-ETEKDSLRRLAKRYGTPEAEIEELLKRFVDIHTIVRRSWILPIE  395 (457)
T ss_pred             HHHHHHHHHHHHHHC-----------CCCeEEeeC-HHHHHHHHHHHHHcCCCHHHHHHHHHHheehHHHHHhhEECCCC
Confidence            456788888888432           456888888 78887777   11211         25677765444 2323446


Q ss_pred             CccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHh
Q 019380          257 SHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRR  295 (342)
Q Consensus       257 ~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~  295 (342)
                      +|||+.++..+ |....    +...|.-.++..|..++.
T Consensus       396 sysLK~v~~~l-g~~~~----~~~~~G~~ai~~y~~~~~  429 (457)
T TIGR03491       396 SYSLKSIARWL-GFEWR----QKEASGAKSLLWYRQWKK  429 (457)
T ss_pred             CCCHHHHHHHh-CcccC----CCCCCHHHHHHHHHHHHH
Confidence            89999999988 88744    234455556666666644

Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.

>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]

Probab=87.49  E-value=0.4  Score=49.41  Aligned_cols=36  Identities=11%  Similarity=0.182  Sum_probs=22.8

Q ss_pred             cCCCCCCCCcccccccccc--------------cCCCCcceecccccccc
Q 019380          101 CSLSAPVPFKISGAIDEKR--------------TCRGPKAVAMDCEMVGG  136 (342)
Q Consensus       101 h~~~~~~~~~~c~~~~~~~--------------~~~~~~~v~~D~Ettg~  136 (342)
                      |+...|..|+.|+...-..              -=+..+++.+|.++|..
T Consensus       470 ~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~FP~~rv~r~d~Dtt~~  519 (730)
T COG1198         470 YQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLFPGARIIRIDSDTTRR  519 (730)
T ss_pred             CCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHCCCCcEEEEccccccc
Confidence            3445566777777662211              11566788999999964

>PRK04860 hypothetical protein; Provisional

Probab=87.28  E-value=0.38  Score=40.07  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDEK  118 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~~~  118 (342)
                      .|. |++   ...++++|.++|.+++++.|..|+.....
T Consensus       121 ~C~-C~~---~~~~~rrH~ri~~g~~~YrC~~C~~~l~~  155 (160)
T PRK04860        121 RCK-CQE---HQLTVRRHNRVVRGEAVYRCRRCGETLVF  155 (160)
T ss_pred             EcC-CCC---eeCHHHHHHHHhcCCccEECCCCCceeEE
Confidence            477 876   77789999999999999999999876543

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=86.76  E-value=0.57  Score=35.06  Aligned_cols=28  Identities=32%  Similarity=0.673  Sum_probs=23.3

Q ss_pred             cccccccccccCCHHHHHHHHhhhccCC
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHSV   41 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~~   41 (342)
                      .+.|..|++.|.+...|..|++.+.|..
T Consensus        50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~   77 (100)
T PF12756_consen   50 SFRCPYCNKTFRSREALQEHMRSKHHKK   77 (100)
T ss_dssp             SEEBSSSS-EESSHHHHHHHHHHTTTTC
T ss_pred             CCCCCccCCCCcCHHHHHHHHcCccCCC
Confidence            6999999999999999999999854543

>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included

Probab=86.59  E-value=1.1  Score=41.64  Aligned_cols=91  Identities=14%  Similarity=0.142  Sum_probs=52.4

Q ss_pred             CCCcceecccccccccC---CCcccccceEEe-ecCC-----CCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHH
Q 019380          122 RGPKAVAMDCEMVGGGS---NGTLDLCARVCL-VDED-----ENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKE  192 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~~---~~~~~il~~v~v-v~~~-----~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~  192 (342)
                      +...+++||+|+...+.   +.....+..+++ +...     ....+-.+..+... ..         ...+.-.....+
T Consensus       155 p~l~i~s~DIe~~~~~~~~P~~~~d~I~~Is~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~v~~~~~E~~  224 (325)
T PF03104_consen  155 PPLRILSFDIETYSNDGKFPDPEKDEIIMISYVVYRNGSSEPYRRKVFTLGSCDSI-ED---------NVEVIYFDSEKE  224 (325)
T ss_dssp             GGSEEEEEEEEECSSSSSS-TTTTSEEEEEEEEEEETTEEETTEEEEEECSCSCCT-TC---------TTEEEEESSHHH
T ss_pred             cccceeEEEEEEccccCCCCCCCCCeEEEEEEEEEeccccCCCceEEEEecCCCCC-CC---------CcEEEEECCHHH
Confidence            56778999999986541   222222244443 2212     11122222222211 11         334444578899


Q ss_pred             HHHHHHHHHhcCCCccccccCCCCCeEEEeeCch-hhhhhcc
Q 019380          193 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR  233 (342)
Q Consensus       193 v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~  233 (342)
                      ++..|.++|.+.           .-.+|+|||+. ||+.+|.
T Consensus       225 lL~~f~~~i~~~-----------dPDii~GyN~~~fD~~yl~  255 (325)
T PF03104_consen  225 LLEAFLDIIQEY-----------DPDIITGYNIDGFDLPYLI  255 (325)
T ss_dssp             HHHHHHHHHHHH-----------S-SEEEESSTTTTHHHHHH
T ss_pred             HHHHHHHHHHhc-----------CCcEEEEecccCCCHHHHH
Confidence            999999999543           22499999976 7999887

; InterPro: IPR006133 DNA is the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the most important events in the life cycle of a cell. This function is performed by DNA- directed DNA-polymerases 2.7.7.7 from EC) by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA, using a complementary DNA chain as a template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain. Even though there are 2 different methods of priming, these are mediated by 2 very similar polymerases classes, A and B, with similar methods of chain elongation. A number of DNA polymerases have been grouped under the designation of DNA polymerase family B. Six regions of similarity (numbered from I to VI) are found in all or a subset of the B family polymerases. The most conserved region (I) includes a conserved tetrapeptide with two aspartate residues. Its function is not yet known. However, it has been suggested that it may be involved in binding a magnesium ion. All sequences in the B family contain a characteristic DTDS motif, and possess many functional domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [], a DNA binding domain, and binding domains for both dNTP's and pyrophosphate []. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold [].; GO: 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1QHT_A 4AHC_A 3A2F_A 2JGU_A 4AIL_C 1NOY_A 1NOZ_B 3IAY_A 1WNS_A 3K5O_A ....

>COG5048 FOG: Zn-finger [General function prediction only]

Probab=86.34  E-value=0.37  Score=46.09  Aligned_cols=49  Identities=31%  Similarity=0.603  Sum_probs=43.6

Q ss_pred             CcccccccccccCCHHHHHHHHh--hhccCCC--CC-ccc--cCccccCChhhhhhhc
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMK--ISYHSVH--QP-KCA--VCQKLSKSFESLREHL   63 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~--~~~H~~~--~~-~C~--~C~~~f~~~~~l~~H~   63 (342)
                      .++.|..|...|+....+..|.+  .  |+.+  ++ .|.  .|++.|.....+..|.
T Consensus       288 ~~~~~~~~~~~~s~~~~l~~~~~~~~--h~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  343 (467)
T COG5048         288 LPIKSKQCNISFSRSSPLTRHLRSVN--HSGESLKPFSCPYSLCGKLFSRNDALKRHI  343 (467)
T ss_pred             cCCCCccccCCccccccccccccccc--cccccCCceeeeccCCCccccccccccCCc
Confidence            47999999999999999999999  7  8888  77 888  7999999999888887

>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.67  E-value=0.87  Score=46.15  Aligned_cols=72  Identities=25%  Similarity=0.306  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHhhhccCCCCC-cc-------ccCccccCChhhhhhhc-CCCcccCCCCCcccC-CcccccccccCChhhH
Q 019380           25 KRKDHLIEHMKISYHSVHQP-KC-------AVCQKLSKSFESLREHL-TGPLSKAHCSGIFSD-RGCNLCMNIFDSPSSL   94 (342)
Q Consensus        25 ~~~~~L~~H~~~~~H~~~~~-~C-------~~C~~~f~~~~~l~~H~-~~~~~C~~C~k~f~~-~~C~~C~k~F~~~~~L   94 (342)
                      .....|+.|+.. .|....- -|       ..+.+. -+...|..|. .+..    +++.|.. ..|..|...|.....|
T Consensus       125 ~s~~~Lk~H~~~-~H~~~~c~lC~~~~kif~~e~k~-Yt~~el~~h~~~gd~----d~~s~rGhp~C~~C~~~fld~~el  198 (669)
T KOG2231|consen  125 KSVENLKNHMRD-QHKLHLCSLCLQNLKIFINERKL-YTRAELNLHLMFGDP----DDESCRGHPLCKFCHERFLDDDEL  198 (669)
T ss_pred             hHHHHHHHHHHH-hhhhhccccccccceeeeeeeeh-ehHHHHHHHHhcCCC----ccccccCCccchhhhhhhccHHHH
Confidence            366778888842 1432211 12       222222 2344566665 2211    3333333 3466666666666666


Q ss_pred             HHHHhhcC
Q 019380           95 IKHKEACS  102 (342)
Q Consensus        95 ~~H~~~h~  102 (342)
                      .+|++.+|
T Consensus       199 ~rH~~~~h  206 (669)
T KOG2231|consen  199 YRHLRFDH  206 (669)
T ss_pred             HHhhccce
Confidence            66666544

>TIGR00622 ssl1 transcription factor ssl1

Probab=83.62  E-value=1.9  Score=33.42  Aligned_cols=22  Identities=23%  Similarity=0.588  Sum_probs=13.8

Q ss_pred             ccccccccCChhhHHHHHhhcC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      |+.|.+.|-.....-.|...|+
T Consensus        84 C~~C~~~FC~dCD~fiHe~Lh~  105 (112)
T TIGR00622        84 CAVCKNVFCVDCDVFVHESLHC  105 (112)
T ss_pred             CCCCCCccccccchhhhhhccC
Confidence            6666666666556666765555

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues

Probab=83.28  E-value=0.65  Score=35.95  Aligned_cols=25  Identities=24%  Similarity=0.473  Sum_probs=15.5

Q ss_pred             cccCCCCCcccCCc-----ccccccccCCh
Q 019380           67 LSKAHCSGIFSDRG-----CNLCMNIFDSP   91 (342)
Q Consensus        67 ~~C~~C~k~f~~~~-----C~~C~k~F~~~   91 (342)
                      ..|+.||+.|..-.     |+.||..|...
T Consensus        10 R~Cp~CG~kFYDLnk~PivCP~CG~~~~~~   39 (108)
T PF09538_consen   10 RTCPSCGAKFYDLNKDPIVCPKCGTEFPPE   39 (108)
T ss_pred             ccCCCCcchhccCCCCCccCCCCCCccCcc
Confidence            34666666665432     77777777655

The function of members of this family is unknown.

>PRK14873 primosome assembly protein PriA; Provisional

Probab=82.52  E-value=0.82  Score=46.99  Aligned_cols=43  Identities=21%  Similarity=0.329  Sum_probs=25.5

Q ss_pred             ccccCccccCCh---hhhhhhc-CCCcccCCCCCcccCCcccccccc
Q 019380           45 KCAVCQKLSKSF---ESLREHL-TGPLSKAHCSGIFSDRGCNLCMNI   87 (342)
Q Consensus        45 ~C~~C~~~f~~~---~~l~~H~-~~~~~C~~C~k~f~~~~C~~C~k~   87 (342)
                      .|..||..+...   ..|.-|. .+...|..||.......|+.||..
T Consensus       385 ~C~~Cg~~~~C~~C~~~L~~h~~~~~l~Ch~CG~~~~p~~Cp~Cgs~  431 (665)
T PRK14873        385 ACARCRTPARCRHCTGPLGLPSAGGTPRCRWCGRAAPDWRCPRCGSD  431 (665)
T ss_pred             EhhhCcCeeECCCCCCceeEecCCCeeECCCCcCCCcCccCCCCcCC
Confidence            466665554332   3355565 345668888776555568888754

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=81.92  E-value=0.69  Score=40.55  Aligned_cols=14  Identities=36%  Similarity=0.596  Sum_probs=10.2

Q ss_pred             ccccCccccCChhh
Q 019380           45 KCAVCQKLSKSFES   58 (342)
Q Consensus        45 ~C~~C~~~f~~~~~   58 (342)
                      .|++|++.|.++.-
T Consensus         7 ~CPvC~~~F~~~~v   20 (214)
T PF09986_consen    7 TCPVCGKEFKTKKV   20 (214)
T ss_pred             ECCCCCCeeeeeEE
Confidence            78888888876643

>KOG1146 consensus Homeobox protein [General function prediction only]

Probab=81.25  E-value=1.1  Score=48.52  Aligned_cols=80  Identities=20%  Similarity=0.275  Sum_probs=40.8

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccccccC
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFD   89 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~F~   89 (342)
                      +-.+-|+|+.|+..|.....|..||+++ |.+...  ..|. .+...-.+.+  .-.|.|.+     .-..|..|..+++
T Consensus       461 S~~kt~~cpkc~~~yk~a~~L~vhmRsk-hp~~~~--~~c~-~gq~~~~~ar--g~~~~~~~-----~p~~C~~C~~stt  529 (1406)
T KOG1146|consen  461 SFFKTLKCPKCNWHYKLAQTLGVHMRSK-HPESQS--AYCK-AGQNHPRLAR--GEVYRCPG-----KPYPCRACNYSTT  529 (1406)
T ss_pred             cccccccCCccchhhhhHHHhhhccccc-ccccch--hHhH-hccccccccc--cccccCCC-----Ccccceeeeeeee
Confidence            3446667777777777777777777653 222211  1111 0110000000  00122211     0113788889999


Q ss_pred             ChhhHHHHHhh
Q 019380           90 SPSSLIKHKEA  100 (342)
Q Consensus        90 ~~~~L~~H~~~  100 (342)
                      .+.+|.+|++.
T Consensus       530 tng~LsihlqS  540 (1406)
T KOG1146|consen  530 TNGNLSIHLQS  540 (1406)
T ss_pred             cchHHHHHHHH
Confidence            99999999875

>smart00451 ZnF_U1 U1-like zinc finger

Probab=80.48  E-value=1.1  Score=26.62  Aligned_cols=21  Identities=29%  Similarity=0.485  Sum_probs=17.5

Q ss_pred             cccccccccCChhhHHHHHhh
Q 019380           80 GCNLCMNIFDSPSSLIKHKEA  100 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~  100 (342)
                      .|..|++.|.....+..|++.
T Consensus         5 ~C~~C~~~~~~~~~~~~H~~g   25 (35)
T smart00451        5 YCKLCNVTFTDEISVEAHLKG   25 (35)
T ss_pred             EccccCCccCCHHHHHHHHCh
Confidence            478899999988889998854

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
1wlj_A	189	Human Isg20 Length = 189		2e-15

>pdb|1WLJ|A Chain A, Human Isg20 Length = 189

Iteration: 1
 Score = 80.1 bits (196), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 54/173 (31%), Positives = 90/173 (52%), Gaps = 21/173 (12%)
Query: 125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDI 184
           + VAMDCEMVG G +    L AR  LV+    V++  +++P+  +T+YR  V+G+T + +
Sbjct: 6   EVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHM 64
Query: 185 KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDT 244
             A P    + +IL++L              K +L+VGH L+HD  +L+ +   + + DT
Sbjct: 65  VGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMSGYTIYDT 110
Query: 245 AKYRPLMKTNLVSH----SLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYK 291
           +  R L +   + H    SL+ L+   L   IQ+ +  H   ED  + M LY+
Sbjct: 111 STDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQ 163

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
1wlj_A	189	Interferon stimulated gene 20KDA; exoribonuclease,	4e-61
1w0h_A	204	3'-5' exonuclease ERI1; nuclease domain, hydrolase	3e-10
1zbh_A	299	3'-5' exonuclease ERI1; histone mRNA 3'-END-specif	1e-09
1zbu_A	349	ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase;	5e-09
2xri_A	224	ERI1 exoribonuclease 3; hydrolase, metal binding;	4e-08
2p1j_A	186	POLIII, DNA polymerase III POLC-type; structural g	2e-05
3cg7_A	308	CRN-4, cell death-related nuclease 4; hydrolase, a	3e-05
1y97_A	238	Three prime repair exonuclease 2; TREX2, hydrolase	5e-05
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	5e-05
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	4e-04
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	5e-04
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	6e-04
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	7e-04
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	8e-04

>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Length = 189

 Score =  192 bits (491), Expect = 4e-61
 Identities = 55/184 (29%), Positives = 93/184 (50%), Gaps = 21/184 (11%)

Query: 122 RGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTE 181
              + VAMDCEMVG G +    L AR  LV+    V++  +++P+  +T+YR  V+G+T 
Sbjct: 3   GSREVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTP 61

Query: 182 EDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHML 241
           + +  A P    + +IL++L              K +L+VGH L+HD  +L+ +   + +
Sbjct: 62  QHMVGATPFAVARLEILQLL--------------KGKLVVGHDLKHDFQALKEDMSGYTI 107

Query: 242 RDTAKYRPLMKTNLVSH----SLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYKRFRR 295
            DT+  R L +   + H    SL+ L+   L   IQ+ +  H   ED  + M LY+  +R
Sbjct: 108 YDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQR 167

Query: 296 QDHQ 299
              +
Sbjct: 168 IRAR 171

>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5 Length = 204

 Score = 57.9 bits (140), Expect = 3e-10
 Identities = 32/169 (18%), Positives = 63/169 (37%), Gaps = 22/169 (13%)

Query: 148 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 202
           V L++     I   F  YV+P++   ++++   +TG+T++ +  A    +V  K+++ + 
Sbjct: 38  VVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDWMK 97

Query: 203 NGESTGRLMLDDGKARLLVGHG-------LEHDLDSLRMNYPDHMLR--DTAK-YRPLMK 252
             E      L       L+  G       L       R+ YP    +  +  K Y    K
Sbjct: 98  LKE------LGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYK 151

Query: 253 TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVE 301
                  L  +    LG D     H   +D  ++ R+  R  +   ++ 
Sbjct: 152 VPRSQTKLTIMLE-KLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELR 199

>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Length = 299

 Score = 57.7 bits (139), Expect = 1e-09
 Identities = 31/169 (18%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 148 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 202
           V L++     I   F  YV+P++   ++++   +TG+T++ +  A    +V  K+++++ 
Sbjct: 106 VVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMK 165

Query: 203 NGESTGRLMLDDGKARLLVGHG-------LEHDLDSLRMNYPDHMLR--DTAK-YRPLMK 252
             E      L       L+  G       L       R+ YP    +  +  K Y    K
Sbjct: 166 LKE------LGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYK 219

Query: 253 TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVE 301
                  L  +    LG D     +   +D  ++ R+  R  +   ++ 
Sbjct: 220 VPRSQTKLTIMLE-KLGMDYDGRPNCGLDDSKNIARIAVRMLQDGCELR 267

>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens} Length = 349

 Score = 55.8 bits (134), Expect = 5e-09
 Identities = 32/169 (18%), Positives = 64/169 (37%), Gaps = 22/169 (13%)

Query: 148 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 202
           V L++     I   F  YV+P++   ++++   +TG+T++ +  A    +V  K+++++ 
Sbjct: 156 VVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQVLKKVIDLMK 215

Query: 203 NGESTGRLMLDDGKARLLVGHG-------LEHDLDSLRMNYPDHMLR--DTAK-YRPLMK 252
             E      L       L+  G       L       R+ YP    +  +  K Y    K
Sbjct: 216 LKE------LGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYK 269

Query: 253 TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVE 301
                  L  +    LG D     H   +D  ++ R+  R  +   ++ 
Sbjct: 270 VPRSQTKLTIMLE-KLGMDYDGRPHCGLDDSKNIARIAVRMLQDGCELR 317

>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens} Length = 224

 Score = 52.2 bits (125), Expect = 4e-08
 Identities = 28/169 (16%), Positives = 60/169 (35%), Gaps = 20/169 (11%)

Query: 148 VCLVDEDENVI---FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN 202
           +  ++     I   FH YVQP +   +T +  E+TG+ +  +     L++V +++ E + 
Sbjct: 57  ILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLERVDEWMA 116

Query: 203 NGESTGRLMLDDGKARLLVGHG-------LEHDLDSLRMNYPDHMLR--DTAKYRPLMKT 253
                   +LD     + V  G       L      L +   D+  +  +  K       
Sbjct: 117 -----KEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMG 171

Query: 254 NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEE 302
               + L  + +  L        H   +DC ++  + K    +    ++
Sbjct: 172 CWPKNGLLDMNK-GLSLQHIGRPHSGIDDCKNIANIMKTLAYRGFIFKQ 219

>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Length = 186

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 26/125 (20%), Positives = 50/125 (40%), Gaps = 26/125 (20%)

Query: 153 EDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRL 210
           +   ++  +HT ++P   ++    E+TG+T+E ++N   ++EV  + L  L +       
Sbjct: 40  QGGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEFLGFLED------- 92

Query: 211 MLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR-------DTAKY-RPLMKTNLVSHSLKY 262
                   ++V H    D   LR+     M         DT    + L+K    S+SL  
Sbjct: 93  -------SIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLLKLR--SYSLDS 143

Query: 263 LTRTY 267
           +    
Sbjct: 144 VVEKL 148

>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A Length = 308

 Score = 44.2 bits (104), Expect = 3e-05
 Identities = 24/162 (14%), Positives = 55/162 (33%), Gaps = 14/162 (8%)

Query: 150 LVDEDENVIFHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGEST 207
           + ++     F+ YV+P L   +T    + TG+ +  I  A     V ++  + L      
Sbjct: 56  IREDIS---FNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTFDVVYEQFQQWLITLGLE 112

Query: 208 GRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLR--DTAKY------RPLMKTNLVSHS 259
                    +R  +    ++ +    +  P    +  +  K       R   K    + +
Sbjct: 113 EGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDRMGPKELSATTN 172

Query: 260 LKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVE 301
           +  +   Y         HD  +DC+++  + +R      +V 
Sbjct: 173 IGKMNE-YYDLPTIGRAHDAMDDCLNIATILQRMINMGAKVT 213

>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Length = 238

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 27/186 (14%), Positives = 51/186 (27%), Gaps = 31/186 (16%)

Query: 126 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIK 185
             A+    +    +          ++D+         + P+ P T    E+TGL+ E + 
Sbjct: 34  LFAVHRSSLENPEHDESGALVLPRVLDK-----LTLCMCPERPFTAKASEITGLSSEGLA 88

Query: 186 NAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGH-------G-LEHDLDSLRMNYP 237
                      ++  L         +        LV H         L  +L  L    P
Sbjct: 89  RC-RKAGFDGAVVRTLQ------AFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLP 141

Query: 238 DHML-RDT---------AKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVM 287
              +  DT         A            +SL  L   Y   +  +  H    D  +++
Sbjct: 142 RDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPSAA-HSAEGDVHTLL 200

Query: 288 RLYKRF 293
            ++   
Sbjct: 201 LIFLHR 206

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1 Length = 66

 Score = 39.8 bits (94), Expect = 5e-05
 Identities = 9/53 (16%), Positives = 20/53 (37%), Gaps = 7/53 (13%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSF---ESLREHL 63
          ++C  C + +    +   H   S+    +   C  C    K F   +++  H+
Sbjct: 11 YRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFC---FKEFTRKDNMTAHV 60

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 115

 Score = 40.9 bits (95), Expect = 7e-05
 Identities = 19/101 (18%), Positives = 27/101 (26%), Gaps = 5/101 (4%)

Query: 14  RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHC 72
           + +C  C   +     L  HM  + H      +         S    R  L     K   
Sbjct: 19  KFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEME-GKEDA 77

Query: 73  SGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISG 113
             +     C  C + F+S   L  H         V    SG
Sbjct: 78  QKVLK---CMYCGHSFESLQDLSVHMIKTKHYQKVSGPSSG 115

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 32/331 (9%), Positives = 84/331 (25%), Gaps = 109/331 (32%)

Query: 61  EHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS--GAIDEK 118
           +H +  L+      +       L     D P      +E  + +   P ++S        
Sbjct: 292 DHHSMTLTPDEVKSLLLK---YLDCRPQDLP------REVLTTN---PRRLSIIAESIRD 339

Query: 119 RTCRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYR--YEV 176
                     ++C+ +       ++       ++              L    YR  ++ 
Sbjct: 340 GLATWDNWKHVNCDKL----TTIIESS-----LN-------------VLEPAEYRKMFDR 377

Query: 177 TGLTEEDIKNAMPLKEVKDKILEIL--NNGESTGRLMLDD-GKARLLVGHGLE-----HD 228
             +             +   +L ++  +  +S   ++++   K  L+     E       
Sbjct: 378 LSVFPPSAH-------IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 229 LD-SLRMNYPD----H-MLRDTAKYRPL------------------------MKTNLVSH 258
           +   L++   +    H  + D   Y                           +K      
Sbjct: 431 IYLELKVKLENEYALHRSIVD--HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488

Query: 259 SLKYLTRTYLGYD-IQSGV-HD--------PYEDCVSVMRLYKRF-RRQDHQVEEIGNQN 307
            +      +L +  ++  + HD           + +  ++ YK +    D + E +    
Sbjct: 489 RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERL---- 544

Query: 308 TTGSFDSYKYKELEKMSPNELYQISKSDYRC 338
                       +    P     +  S Y  
Sbjct: 545 ---------VNAILDFLPKIEENLICSKYTD 566

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 96

 Score = 38.2 bits (90), Expect = 4e-04
 Identities = 27/90 (30%), Positives = 35/90 (38%), Gaps = 20/90 (22%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TG--PLS 68
          HKC  C K F RKD L  HM+   H+  +P KC  C   +    SL +HL   +   P  
Sbjct: 9  HKCEVCGKCFSRKDKLKTHMRC--HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66

Query: 69 KAHCSGIFSDRGCNLCMNIFDSPSSLIKHK 98
                      C +C     + S L  H 
Sbjct: 67 ------------CQICPYASRNSSQLTVHL 84

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 Length = 95

 Score = 37.9 bits (89), Expect = 5e-04
 Identities = 23/87 (26%), Positives = 30/87 (34%), Gaps = 14/87 (16%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKA 70
            C  C K F+   HL  H     HS  +P  C VC    K  + +  H+    G + K 
Sbjct: 8  VACEICGKIFRDVYHLNRHKLS--HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKP 65

Query: 71 HCSGIFSDRGCNLCMNIFDSPSSLIKH 97
          +         C  C   F  P  L  H
Sbjct: 66 Y--------ICQSCGKGFSRPDHLNGH 84

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 37.0 bits (86), Expect = 6e-04
 Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 8/54 (14%)

Query: 15 HKCVACYKQFKRKDHLIEHMKI-SYHSVHQP-KCAVCQKLSKSFE---SLREHL 63
           +C  C    ++K  L  H +  +         C  C    K FE   S+  H 
Sbjct: 8  LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFC---GKRFEKPDSVAAHR 58

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 Length = 54

 Score = 36.4 bits (85), Expect = 7e-04
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK 51
          + C +C K F R DHL  H+K   H+  +P KC V   
Sbjct: 13 YICQSCGKGFSRPDHLNGHIK-QVHTSERPHKCQVWVS 49

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C Length = 90

 Score = 37.1 bits (87), Expect = 8e-04
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 9/52 (17%)

Query: 15 HKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSF---ESLREH 62
           +C  C + F R DHL  H++   H+  +P  C +C    + F   +  + H
Sbjct: 35 FQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDIC---GRKFARSDERKRH 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
1wlj_A	189	Interferon stimulated gene 20KDA; exoribonuclease,	99.97
2gui_A	194	DNA polymerase III epsilon subunit; DNA polymerase	99.95
2p1j_A	186	POLIII, DNA polymerase III POLC-type; structural g	99.95
1w0h_A	204	3'-5' exonuclease ERI1; nuclease domain, hydrolase	99.94
3mxm_B	242	Three prime repair exonuclease 1; RNAse H-like fol	99.93
3cg7_A	308	CRN-4, cell death-related nuclease 4; hydrolase, a	99.93
2xri_A	224	ERI1 exoribonuclease 3; hydrolase, metal binding;	99.93
1zbh_A	299	3'-5' exonuclease ERI1; histone mRNA 3'-END-specif	99.92
3u3y_B	314	Three prime repair exonuclease 1; RNAse H fold, 3'	99.92
1y97_A	238	Three prime repair exonuclease 2; TREX2, hydrolase	99.91
1zbu_A	349	ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase;	99.91
2f96_A	224	Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas	99.91
2igi_A	180	Oligoribonuclease; RNAse, exoribonuclease, exonucl	99.9
3v9w_A	235	Ribonuclease T; DEDD nucleases family, EXO-nucleas	99.89
3tr8_A	186	Oligoribonuclease; transcription, hydrolase; 2.50A	99.88
2gbz_A	194	Oligoribonuclease; ORN, deddh, structural genomics	99.88
2qxf_A	482	Exodeoxyribonuclease I; alpha-beta domain, DNAQ su	99.87
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.7
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.69
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	99.67
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.66
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.64
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.61
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	99.61
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	99.6
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	99.59
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	99.58
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.55
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	99.53
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	99.52
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	99.52
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	99.51
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	99.49
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	99.46
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	99.44
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	99.43
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.37
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	99.37
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	99.35
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	99.29
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	99.28
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	99.28
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	99.22
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	99.21
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	99.21
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	99.17
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	99.11
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	99.1
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	99.09
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	99.06
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	99.06
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	99.05
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.05
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	99.04
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	99.04
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.97
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.96
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	98.95
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.95
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	98.95
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.94
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.93
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	98.93
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.93
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.92
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	98.9
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.89
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	98.86
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.86
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.86
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	98.82
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	98.81
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	98.81
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	98.8
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	98.8
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	98.79
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	98.79
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	98.76
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	98.75
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.73
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	98.73
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	98.72
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	98.72
2epa_A	72	Krueppel-like factor 10; transforming growth facto	98.69
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.67
2kfn_A	605	Klenow fragment of DNA polymerase I; complex (poly	98.67
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	98.65
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	98.64
4hec_A	190	Putative uncharacterized protein; ssgcid, structur	98.63
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.62
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.62
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.62
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.62
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	98.61
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.61
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.61
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.61
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.6
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.6
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.6
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.6
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.6
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.6
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	98.6
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.6
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.6
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.6
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.6
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.59
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.59
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.59
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.59
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.59
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.59
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.58
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.58
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.58
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	98.57
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.57
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.57
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.57
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.57
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.57
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.57
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.57
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.57
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.57
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	98.57
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.56
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.56
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.56
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.56
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.56
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.56
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.56
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.55
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	98.55
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.55
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.55
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.55
1x9m_A	698	DNA polymerase; DNA ploymerase, N-2-acetylaminoflu	98.52
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.52
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	98.52
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.52
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.51
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.51
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.49
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	98.49
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	98.47
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	98.45
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	98.45
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	98.45
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	98.45
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	98.42
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	98.41
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.41
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.41
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.4
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.4
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.4
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.39
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.39
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.39
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.39
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	98.39
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.39
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.39
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.38
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.38
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.38
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.38
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	98.38
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.38
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.38
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.37
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.37
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.36
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	98.36
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.36
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.36
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.36
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.36
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.35
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	98.35
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.35
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	98.35
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	98.35
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	98.35
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.35
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	98.34
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.34
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	98.34
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	98.33
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.33
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	98.33
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.33
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	98.32
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.32
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.32
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	98.32
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.31
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.31
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.31
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	98.31
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	98.28
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.28
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	98.27
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	98.24
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.24
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.22
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.22
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.22
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	98.21
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	98.21
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.21
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.21
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.2
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	98.2
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.19
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.19
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.19
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.19
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	98.19
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	98.19
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	98.19
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.18
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.18
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.17
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.17
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	98.16
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.16
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	98.15
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.15
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.14
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.14
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	98.14
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	98.13
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.13
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	98.13
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.12
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.12
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.12
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.11
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.11
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.11
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.11
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	98.11
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.11
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.1
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.1
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	98.1
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	98.1
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	98.1
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	98.09
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	98.09
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.09
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.09
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.08
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.08
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.08
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.08
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	98.08
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	98.07
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.07
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	98.07
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.07
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.07
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	98.06
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.06
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	98.06
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.06
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	98.06
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.06
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.05
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	98.05
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	98.05
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	98.04
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	98.04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.04
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	98.03
1ard_A	29	Yeast transcription factor ADR1; transcription reg	98.01
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	98.0
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	98.0
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.99
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	97.99
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	97.99
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.98
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	97.98
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.98
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.97
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.97
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.97
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.97
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.96
2epa_A	72	Krueppel-like factor 10; transforming growth facto	97.96
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.96
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.96
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.95
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.95
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.95
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.95
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.94
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.94
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.93
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.93
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	97.93
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.93
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	97.92
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	97.92
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.92
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.92
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.91
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	97.14
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	97.91
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.91
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	97.91
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	97.9
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.9
4dfk_A	540	DNA polymerase I, thermostable; DNA polymerase, tr	97.9
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	97.9
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.89
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	97.88
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	97.1
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	97.88
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.88
4gmj_B	285	CCR4-NOT transcription complex subunit 7; mRNA dec	97.87
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	97.86
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.86
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.86
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	97.86
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.86
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	97.86
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.85
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	97.84
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.84
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	97.83
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	97.82
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	97.82
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	97.82
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	97.81
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	97.81
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	97.02
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	97.8
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	97.8
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	97.79
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.76
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	97.75
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	97.75
3saf_A	428	Exosome component 10; exoribonuclease, RNA exosome	97.74
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.74
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	97.7
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	97.69
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	97.69
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	97.68
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	97.61
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	97.6
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.55
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	97.52
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	97.48
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	97.46
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	97.45
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.45
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	97.44
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	97.44
2d9k_A	75	FLN29 gene product; zinc finger, ZF-TRAF, structur	97.4
1ard_A	29	Yeast transcription factor ADR1; transcription reg	97.4
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	97.38
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	97.32
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	97.32
2e6m_A	208	Werner syndrome ATP-dependent helicase homolog; AP	97.31
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	97.3
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.27
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	97.26
1noy_A	388	Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas	97.24
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	97.24
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	96.33
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.21
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.2
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	97.19
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.17
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	97.16
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.14
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	97.14
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	96.2
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.12
1qht_A	775	Protein (DNA polymerase); archaea, hyperthermostab	97.09
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	97.09
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.07
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	97.06
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	97.02
2a1r_A	430	Poly(A)-specific ribonuclease PARN; DEDD, nuclease	97.02
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	97.01
1vk0_A	206	Hypothetical protein; homohexamer, AT5G06450, stru	96.99
3d45_A	507	Poly(A)-specific ribonuclease PARN; CAP analogue,	96.96
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	95.96
2p51_A	333	SPCC18.06C protein; DEDD nuclease fold, hydrolase,	96.81
1yt3_A	375	Ribonuclease D, RNAse D; exoribonuclease, exonucle	96.8
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	96.79
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	96.78
3pv8_A	592	DNA polymerase I; DNA polymerase I, protein-DNA co	96.77
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	96.76
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	96.69
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.61
1s5j_A	847	DNA polymerase I; replication, disulfide bonds, tr	96.45
2hbj_A	410	Exosome complex exonuclease RRP6; RNA metabolism,	96.35
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	96.34
3qex_A	903	DNA polymerase, GP43; difluorotoluene nucleoside;	96.25
3iay_A	919	DNA polymerase delta catalytic subunit; protein-DN	96.11
3k59_A	786	POL II, DNA polymerase II; protein-DNA complex, DN	95.94
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	95.82
3cym_A	440	Uncharacterized protein BAD_0989; structural genom	95.46
2gv9_A	1193	DNA polymerase; polymerase alpha fold, transferase	94.85
2d5r_A	252	CCR4-NOT transcription complex subunit 7; poly(A)	94.69
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	94.41
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	93.93
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	93.57
1uoc_A	289	POP2; hydrolase, DEDD nuclease, mRNA degradation,	93.09
1zu1_A	127	DSRBP-ZFA, RNA binding protein ZFA; zinc finger pr	92.5
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	90.46
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	89.63
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	88.5
1fu9_A	36	U-shaped transcriptional cofactor; zinc-finger, be	85.74
2jsp_A	87	Transcriptional regulatory protein ROS; prokaryoti	82.74

>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5

Probab=99.97  E-value=1.5e-31  Score=229.71  Aligned_cols=162  Identities=33%  Similarity=0.537  Sum_probs=139.1

Q ss_pred             CCcceecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHh
Q 019380          123 GPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILN  202 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~  202 (342)
                      ..+++++|+||||+++....++ +.+.+|+.+|+++|+++|+|..+|+++++++||||+++|+++|++.+|+++|.+|+ 
T Consensus         4 ~~~~vviD~ETTGl~~~~~~~i-iei~~v~~~g~~i~~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~~~~~l-   81 (189)
T 1wlj_A            4 SREVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLL-   81 (189)
T ss_dssp             --CEEEEEEEEEEETTTTEEEE-EEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHH-
T ss_pred             CCeEEEEEeECcCcCCCCCceE-EEEEEEeCCCCEEEeeEecCCCCCCccccCCCCCCHHHHcCCCCHHHHHHHHHHHH-
Confidence            4579999999999976554444 67778888999999999999999999999999999999999999999999999999 


Q ss_pred             cCCCccccccCCCCCeEEEeeCchhhhhhccccCCCcceeeccccccc----cccCCCCccHHHHHHHHhCCcCCCC--C
Q 019380          203 NGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPL----MKTNLVSHSLKYLTRTYLGYDIQSG--V  276 (342)
Q Consensus       203 ~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~----~~~~~~~~~L~~l~~~~~~~~~~~~--~  276 (342)
                                   ++.+|||||+.||+.||+..+|...++||+.++..    ..|...+++|+.|++.++|++++.+  +
T Consensus        82 -------------~~~~lV~hn~~fD~~~L~~~~~~~~~idt~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~~~~  148 (189)
T 1wlj_A           82 -------------KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLG  148 (189)
T ss_dssp             -------------TTSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTC
T ss_pred             -------------CCCEEEECCcHHHHHHHHHhCCCCceechHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCCCCC
Confidence                         78999999999999999988888789999987532    3344578999999999669998765  9


Q ss_pred             CCcHHHHHHHHHHHHHHHhhhhh
Q 019380          277 HDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       277 H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      |+|++||++|++||.+++++++.
T Consensus       149 H~Al~Da~ata~l~~~l~~~~~~  171 (189)
T 1wlj_A          149 HSSVEDARATMELYQISQRIRAR  171 (189)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999998765

>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*

Probab=99.95  E-value=3.8e-28  Score=209.42  Aligned_cols=158  Identities=20%  Similarity=0.326  Sum_probs=132.2

Q ss_pred             CCcceecccccccccC-------CCcccccceEEeecCCCCe---EEeeecCCCCCccccccccCCCCHhhhcCCCChHH
Q 019380          123 GPKAVAMDCEMVGGGS-------NGTLDLCARVCLVDEDENV---IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKE  192 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~-------~~~~~il~~v~vv~~~~~~---~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~  192 (342)
                      .++++++|+||||+++       ++++++ +.+.+.  +|.+   .|+++|+|..+++++++++||||+++|+++|++.+
T Consensus         8 ~~~~vviD~ETTGl~~~~~~~~~~~Iiei-g~v~~~--~~~~~~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~   84 (194)
T 2gui_A            8 ITRQIVLDTETTGMNQIGAHYEGHKIIEI-GAVEVV--NRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAE   84 (194)
T ss_dssp             CCEEEEEEEEESCCCSSSSTTTTCCEEEE-EEEEEE--TTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHHH
T ss_pred             cCCEEEEEeeCCCCCCcccCCCCCEEEEE-EEEEEE--CCeEeccEEEEEECcCCcCCHHHHHhhCcCHHHHhCCCCHHH
Confidence            4679999999999876       556666 666663  4554   49999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccc-------cCCC----cceeeccccccccccCCCCccHH
Q 019380          193 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-------NYPD----HMLRDTAKYRPLMKTNLVSHSLK  261 (342)
Q Consensus       193 v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-------~~~~----~~~~Dt~~l~~~~~~~~~~~~L~  261 (342)
                      |+++|.+|+              ++.+|||||+.||+.||+.       ..|.    ..++||+.+++.++|.. .++|+
T Consensus        85 v~~~~~~~l--------------~~~~lv~hn~~fD~~~L~~~~~~~g~~~p~~~~~~~~iDt~~l~~~~~p~~-~~~L~  149 (194)
T 2gui_A           85 VADEFMDYI--------------RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGK-RNSLD  149 (194)
T ss_dssp             HHHHHHHHH--------------TTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTTS-CCSHH
T ss_pred             HHHHHHHHH--------------CCCeEEEEchHHhHHHHHHHHHHcCCCCccccccCceeeHHHHHHHHcCCC-CCCHH
Confidence            999999999              7889999999999999982       2231    47899999988877753 57999


Q ss_pred             HHHHHHhCCcCCC-CCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          262 YLTRTYLGYDIQS-GVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       262 ~l~~~~~~~~~~~-~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      .|++.| |++..+ .+|+|++||++|++||.++.++++.
T Consensus       150 ~l~~~~-gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~  187 (194)
T 2gui_A          150 ALCARY-EIDNSKRTLHGALLDAQILAEVYLAMTGGQTS  187 (194)
T ss_dssp             HHHHHT-TCCCTTCSSCCHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHc-CcCCCCCCCCChHHHHHHHHHHHHHHHhccch
Confidence            999987 998655 4899999999999999999988654

>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}

Probab=99.95  E-value=3.5e-28  Score=208.21  Aligned_cols=158  Identities=22%  Similarity=0.316  Sum_probs=132.9

Q ss_pred             CCCcceecccccccccC--CCcccccceEEeecCCCCeE--EeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHH
Q 019380          122 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVI--FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKI  197 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~~--~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~  197 (342)
                      ....++++|+||||+++  +.++++ +.+.+.  +|+++  |+++|+|..+++++++++||||+++++++|++.+|+++|
T Consensus        10 ~~~~~v~iD~ETTGl~~~~~~IieI-g~v~~~--~g~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~~~~   86 (186)
T 2p1j_A           10 GDATFVVLDFETTGLDPQVDEIIEI-GAVKIQ--GGQIVDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVLPEF   86 (186)
T ss_dssp             ---CEEEEEEEESCSCTTTCCEEEE-EEEEEE--TTEEEEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHHHHH
T ss_pred             cCCCEEEEEEECCCCCCCCCeEEEE-EEEEEE--CCEEEEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHHHHH
Confidence            34679999999999863  456666 666553  56665  999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc-------ccCCCcceeeccccccccccCCCCccHHHHHHHHhCC
Q 019380          198 LEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGY  270 (342)
Q Consensus       198 ~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~  270 (342)
                      .+|+              ++.+|||||+.||+.||+       +..+...++||+.+++.++ ...+++|+.|++.| |+
T Consensus        87 ~~~l--------------~~~~lv~hn~~fD~~~L~~~~~~~g~~~~~~~~iDt~~l~~~~~-~~~~~~L~~l~~~~-gi  150 (186)
T 2p1j_A           87 LGFL--------------EDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYIDTLALAKSLL-KLRSYSLDSVVEKL-GL  150 (186)
T ss_dssp             HHHS--------------SSCEEEETTHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHT-CCSCCSHHHHHHHT-TC
T ss_pred             HHHH--------------CCCEEEEECcHHHHHHHHHHHHHcCCCCCCCCEEeHHHHHHHHh-hcCCCCHHHHHHHc-CC
Confidence            9999              788999999999999998       2233467899999988877 56789999999987 98


Q ss_pred             cCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          271 DIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       271 ~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      +.. ++|+|++||++|++||.+++++..+
T Consensus       151 ~~~-~~H~Al~Da~~t~~l~~~l~~~~~~  178 (186)
T 2p1j_A          151 GPF-RHHRALDDARVTAQVFLRFVEMMKK  178 (186)
T ss_dssp             CST-TCCHHHHHHHHHHHHHHHHTTCC--
T ss_pred             CCC-CCcCHHHHHHHHHHHHHHHHHHHHh
Confidence            854 5899999999999999999887543

>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5

Probab=99.94  E-value=2.1e-27  Score=206.26  Aligned_cols=168  Identities=17%  Similarity=0.257  Sum_probs=135.7

Q ss_pred             CCcceecccccccccC------CCcccccceEEeecCCCCeE--EeeecCCCC--CccccccccCCCCHhhhcCCCChHH
Q 019380          123 GPKAVAMDCEMVGGGS------NGTLDLCARVCLVDEDENVI--FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKE  192 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~------~~~~~il~~v~vv~~~~~~~--~~~lv~p~~--~i~~~~~~i~GIt~e~l~~~~~~~~  192 (342)
                      ...++++|+||||+++      ++++++ +.+.+...+|+++  |+++|+|..  +++++++.+||||+++|+++|++.+
T Consensus         9 ~~~~vviD~ETTGl~~~~~~~~~~Iiei-gav~~~~~~g~i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~~~~~   87 (204)
T 1w0h_A            9 YDYICIIDFEATCEEGNPPEFVHEIIEF-PVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ   87 (204)
T ss_dssp             SSEEEECCCEECCCTTCCTTSCCCEEEE-EEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHH
T ss_pred             cCEEEEEEEecCCcCCCCCCCCCcEEEE-EEEEEECCCCEEeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCCCHHH
Confidence            4568999999999864      567776 5555432378875  999999998  8999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhh-hcc-------ccCCCc--ceeeccccccccccC-CCCccHH
Q 019380          193 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLR-------MNYPDH--MLRDTAKYRPLMKTN-LVSHSLK  261 (342)
Q Consensus       193 v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~-~l~-------~~~~~~--~~~Dt~~l~~~~~~~-~~~~~L~  261 (342)
                      |+++|.+||.+...       +....+|||||+.||+. ||+       +..|..  .++||..+++..++. ...++|+
T Consensus        88 v~~~~~~~l~~~~~-------~~~~~~lv~hn~~fD~~~~L~~~~~~~~~~~p~~~~~~~dt~~l~~~~~~~~~~~~~L~  160 (204)
T 1w0h_A           88 VLKKVIDWMKLKEL-------GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLT  160 (204)
T ss_dssp             HHHHHHHHHHHTTB-------TTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHH
T ss_pred             HHHHHHHHHHhcCC-------CCCCcEEEEEECcchHHHHHHHHHHHhCCCCcccccceEEHHHHHHHHhCCCCccchHH
Confidence            99999999943210       11345799999999996 997       334432  789999998877664 2358999


Q ss_pred             HHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          262 YLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       262 ~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      .|++.| |++..+.+|+|++||++|++||.+++++...
T Consensus       161 ~l~~~~-gi~~~~~~H~Al~Da~~ta~l~~~l~~~~~~  197 (204)
T 1w0h_A          161 IMLEKL-GMDYDGRPHCGLDDSKNIARIAVRMLQDGCE  197 (204)
T ss_dssp             HHHHHT-TCCCCSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHc-CCCCCCCccCcHHHHHHHHHHHHHHHHCCCe
Confidence            999988 9986655899999999999999999988643

>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A

Probab=99.93  E-value=1.1e-26  Score=206.70  Aligned_cols=164  Identities=15%  Similarity=0.119  Sum_probs=133.6

Q ss_pred             cCCCCcceeccccccccc--CCCcccccceEEeecCC--------C---------Ce--EEeeecCCCCCccccccccCC
Q 019380          120 TCRGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDED--------E---------NV--IFHTYVQPQLPVTNYRYEVTG  178 (342)
Q Consensus       120 ~~~~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~--------~---------~~--~~~~lv~p~~~i~~~~~~i~G  178 (342)
                      ..+...||+||+||||++  .++++|+ +.+.+.+..        |         ++  .|+++|+|..+|++.++.+||
T Consensus         8 ~~~~~~~vv~D~ETTGl~~~~d~IiEI-gav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~G   86 (242)
T 3mxm_B            8 HGHMQTLIFLDLEATGLPSSRPEVTEL-CLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITG   86 (242)
T ss_dssp             TCCCSEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHC
T ss_pred             ccccceEEEEEeecCCCCCCCCeeEEE-EEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcC
Confidence            334567999999999986  5788888 777775431        1         33  699999999999999999999


Q ss_pred             CCHhhhcCC--CChH-HHHHHHHHHHhcCCCccccccCCCCC----eEEEeeCc-hhhhhhcc-------ccCC--Ccce
Q 019380          179 LTEEDIKNA--MPLK-EVKDKILEILNNGESTGRLMLDDGKA----RLLVGHGL-EHDLDSLR-------MNYP--DHML  241 (342)
Q Consensus       179 It~e~l~~~--~~~~-~v~~~~~~~l~~~~~~~~~~~~~~~~----~~lvgh~~-~~D~~~l~-------~~~~--~~~~  241 (342)
                      ||+++|.++  |+|. +|+++|.+|+              ++    .+|||||+ .||+.||+       +..+  ...+
T Consensus        87 It~~~l~~~g~p~~~~ev~~~~~~fl--------------~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~~~~~~~  152 (242)
T 3mxm_B           87 LSKAELEVQGRQRFDDNLAILLRAFL--------------QRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFC  152 (242)
T ss_dssp             CCHHHHHHTTCCCSCHHHHHHHHHHH--------------HTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEE
T ss_pred             CCHHHHHhcCCCchhHHHHHHHHHHH--------------hcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCCccCCeE
Confidence            999999998  9996 9999999999              55    89999995 99999998       2222  2368


Q ss_pred             eeccccccccc--------cCCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          242 RDTAKYRPLMK--------TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       242 ~Dt~~l~~~~~--------~~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      +||+.+++.+.        +...+++|+.|++.++|++.. ++|+|++||++|++||.++.+++..
T Consensus       153 iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~-~~H~Al~Da~ata~l~~~~~~~~~~  217 (242)
T 3mxm_B          153 VDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPT-DSHTAEGDDLTLLSICQWKPQALLQ  217 (242)
T ss_dssp             EEHHHHHHHHHHHHCC------CCCSHHHHHHHHHSSCCS-STTSHHHHHHHHHHHHTSSHHHHHH
T ss_pred             eehHHHHHHHHhhcCccccCCCCCcCHHHHHHHHhCCCCC-CCcChHHHHHHHHHHHHHHHHHHHH
Confidence            99999887554        336789999999885599954 5999999999999999998877654

>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A

Probab=99.93  E-value=6.8e-27  Score=214.98  Aligned_cols=194  Identities=17%  Similarity=0.263  Sum_probs=151.8

Q ss_pred             CCcceecccccccccCC-----CcccccceEEeec-CCCCe----EEeeecCCCCC--ccccccccCCCCHhhhcCCCCh
Q 019380          123 GPKAVAMDCEMVGGGSN-----GTLDLCARVCLVD-EDENV----IFHTYVQPQLP--VTNYRYEVTGLTEEDIKNAMPL  190 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~~-----~~~~il~~v~vv~-~~~~~----~~~~lv~p~~~--i~~~~~~i~GIt~e~l~~~~~~  190 (342)
                      ...+++||+||||++..     +++|+ +.+.+ | .+|++    .|+++|+|...  |+++++.+||||+++|+++|+|
T Consensus        18 ~~~~vviD~ETTGl~~~~d~~~eIIEI-gaV~v-d~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ap~~   95 (308)
T 3cg7_A           18 FDTLLILDFETTSDAANQDYPCEVIQF-AIVAY-DVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDTADTF   95 (308)
T ss_dssp             CSEEEEEEEEECCBTTBCSCCCCEEEE-EEEEE-ETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHTSCBH
T ss_pred             CCeEEEEEeecCCCCCCCCCCCCeEEE-EEEEE-EcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhcCCCH
Confidence            35689999999998753     66666 55544 4 36666    38999999984  9999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCc------hhhh-hhcc-------ccCCC--cceeeccccccccccC
Q 019380          191 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL------EHDL-DSLR-------MNYPD--HMLRDTAKYRPLMKTN  254 (342)
Q Consensus       191 ~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~------~~D~-~~l~-------~~~~~--~~~~Dt~~l~~~~~~~  254 (342)
                      .+|+++|.+||              ++.++||||+      .||+ .||+       +..|.  .+++||+.+++..++.
T Consensus        96 ~evl~~f~~~l--------------~~~~lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~  161 (308)
T 3cg7_A           96 DVVYEQFQQWL--------------ITLGLEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFFRQYINLYKIFTNEMDR  161 (308)
T ss_dssp             HHHHHHHHHHH--------------HHHCCCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGGSEEEEHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--------------HhCCcCCcceEEeccCcccHHHHHHHHHHHcCCCCchhhcceeeHHHHHHHHhcc
Confidence            99999999999              6777888888      9999 7886       33442  4689999998877664


Q ss_pred             CC------CccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhhhhh--hcc------CCCCCCCCchhhH--
Q 019380          255 LV------SHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEE--IGN------QNTTGSFDSYKYK--  318 (342)
Q Consensus       255 ~~------~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~~--  318 (342)
                      ..      +++|.+|++.| |+++.+.+|+|++||++|++||.+++++...+..  ...      ..+......|+++  
T Consensus       162 ~~~~~~~~~~~L~~l~~~~-gi~~~~~~HrAl~DA~ata~l~~~l~~~~~~~~i~~~~~~s~~~~~~~~~~~~~w~~~~~  240 (308)
T 3cg7_A          162 MGPKELSATTNIGKMNEYY-DLPTIGRAHDAMDDCLNIATILQRMINMGAKVTVNELLTCCASWRRQPLVYNKEWRSSFM  240 (308)
T ss_dssp             HCCCCCCCCSHHHHHHHHT-TCCCCSCTTCHHHHHHHHHHHHHHHHHTTCCCCCCEEEESCCGGGSSCCCCCTTGGGCHH
T ss_pred             ccccccccCcCHHHHHHHc-CCCCCCCCcCHHHHHHHHHHHHHHHHHcCCCCChHHHHhhcCCccccccccCcccccchH
Confidence            32      68999999888 9997665799999999999999999876543111  110      1121334588866  


Q ss_pred             ----HhhhCChhhhhhccC
Q 019380          319 ----ELEKMSPNELYQISK  333 (342)
Q Consensus       319 ----~~~~~~~~~~~~~~~  333 (342)
                          .++++.|.+++++++
T Consensus       241 ~~~~~~~~~~p~~~~~~~~  259 (308)
T 3cg7_A          241 DAGKIFERVLPLVVTTIRA  259 (308)
T ss_dssp             HHHHHHHHHSSCEEEECCG
T ss_pred             HHHHHHHHhcccceeeeec
Confidence                889999999998876

>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}

Probab=99.93  E-value=2.3e-26  Score=202.65  Aligned_cols=157  Identities=17%  Similarity=0.265  Sum_probs=128.1

Q ss_pred             CcceecccccccccCC----CcccccceEEeecCCCCeE--EeeecCCCC--CccccccccCCCCHhhhcCCCChHHHHH
Q 019380          124 PKAVAMDCEMVGGGSN----GTLDLCARVCLVDEDENVI--FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKEVKD  195 (342)
Q Consensus       124 ~~~v~~D~Ettg~~~~----~~~~il~~v~vv~~~~~~~--~~~lv~p~~--~i~~~~~~i~GIt~e~l~~~~~~~~v~~  195 (342)
                      ..++++|+||||+++.    +++|+ +++.+.+..++++  |+++|+|..  +|+++++++||||+++|+++|++.+|++
T Consensus        31 ~~~vviD~ETTGl~~~~d~~~IieI-gav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v~~  109 (224)
T 2xri_A           31 HYFLVLDFEATCDKPQIHPQEIIEF-PILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQVLE  109 (224)
T ss_dssp             SEEEEECCEECCCC-CCSSCCEEEE-EEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHHHH
T ss_pred             CeEEEEEEEcCCCCCCCCCcceEEE-EEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHHHH
Confidence            5799999999998743    67777 6666654446775  999999997  8999999999999999999999999999


Q ss_pred             HHHHHHhcCCCccccccCCCCCeEEEeeCc--------hhhhhh-cc-------ccCCC--cceeecc---ccccccccC
Q 019380          196 KILEILNNGESTGRLMLDDGKARLLVGHGL--------EHDLDS-LR-------MNYPD--HMLRDTA---KYRPLMKTN  254 (342)
Q Consensus       196 ~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~--------~~D~~~-l~-------~~~~~--~~~~Dt~---~l~~~~~~~  254 (342)
                      +|.+|+              ++.+|||||+        .||+.| |+       +..|.  ..++|+.   .+++...| 
T Consensus       110 ~f~~~l--------------~~~~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~~~~~iD~~~~~~~~~~~~p-  174 (224)
T 2xri_A          110 RVDEWM--------------AKEGLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADYFKQWINLKKAYSFAMGCWP-  174 (224)
T ss_dssp             HHHHHH--------------HHTTTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGGGSCEEEHHHHHHHHHTSCC-
T ss_pred             HHHHHH--------------hhcccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCcccccceEeHHHHHHHHhccCC-
Confidence            999999              6778999999        999997 64       33442  3688944   34443333 


Q ss_pred             CCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          255 LVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       255 ~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                        .++|..|++.| |++..+.+|+|++||++|++||.++++++..
T Consensus       175 --~~~L~~l~~~~-gi~~~~~~H~Al~DA~~ta~l~~~l~~~g~~  216 (224)
T 2xri_A          175 --KNGLLDMNKGL-SLQHIGRPHSGIDDCKNIANIMKTLAYRGFI  216 (224)
T ss_dssp             --TTTHHHHHHHT-TCCCCSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             --CCCHHHHHHHc-CCCCCCCCcChHHHHHHHHHHHHHHHHcCCE
Confidence              48999999988 9886556899999999999999999987644

>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}

Probab=99.92  E-value=1.6e-25  Score=205.47  Aligned_cols=167  Identities=16%  Similarity=0.253  Sum_probs=134.3

Q ss_pred             CCcceeccccccccc------CCCcccccceEEeecCCCCeE--EeeecCCCC--CccccccccCCCCHhhhcCCCChHH
Q 019380          123 GPKAVAMDCEMVGGG------SNGTLDLCARVCLVDEDENVI--FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKE  192 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~------~~~~~~il~~v~vv~~~~~~~--~~~lv~p~~--~i~~~~~~i~GIt~e~l~~~~~~~~  192 (342)
                      ...+++||+||||++      .++++++ +.+.+...+|+++  |+++|+|..  +|+++++.+||||+++|+++|+|.+
T Consensus        77 ~~~~vviD~ETTGl~~~~~~~~~~IIeI-gaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~e  155 (299)
T 1zbh_A           77 YDYICIIDFEATCEEGNPPEFVHEIIEF-PVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ  155 (299)
T ss_dssp             CSEEEEECCEECCCTTCCTTCCCCEEEE-EEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHH
T ss_pred             CceEEEEEeecccCCCCCCCCCCceEEE-EEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHH
Confidence            467899999999984      4567777 6666644467775  999999998  8999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhh-hcc-------ccCCC--cceeeccccccccccCC-CCccHH
Q 019380          193 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLR-------MNYPD--HMLRDTAKYRPLMKTNL-VSHSLK  261 (342)
Q Consensus       193 v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~-~l~-------~~~~~--~~~~Dt~~l~~~~~~~~-~~~~L~  261 (342)
                      |+++|.+||.....       +..+.++||||+.||+. ||+       +..|.  ..++|+..+++..++.. ..++|.
T Consensus       156 vl~~f~~~l~~~~~-------~~~~~~lVahn~~fD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~  228 (299)
T 1zbh_A          156 VLKKVIDLMKLKEL-------GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLT  228 (299)
T ss_dssp             HHHHHHHHHHHTTB-------TTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGCSHH
T ss_pred             HHHHHHHHHhhccc-------CCCCcEEEEEeCHHHHHHHHHHHHHHcCCCCCcccchHHHHHHHHHHHhCCCCCCccHH
Confidence            99999999943210       11236999999999999 997       23342  36899988776654422 248999


Q ss_pred             HHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhh
Q 019380          262 YLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       262 ~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~  298 (342)
                      .|+++| |++..+.+|+|++||++|++||.+++++..
T Consensus       229 ~l~~~~-gi~~~g~~H~Al~DA~ata~l~~~l~~~~~  264 (299)
T 1zbh_A          229 IMLEKL-GMDYDGRPNCGLDDSKNIARIAVRMLQDGC  264 (299)
T ss_dssp             HHHHHT-TCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHc-CCCCCCCCCChHHHHHHHHHHHHHHHHhCC
Confidence            999988 998665589999999999999999998753

>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*

Probab=99.92  E-value=1.4e-25  Score=204.70  Aligned_cols=167  Identities=13%  Similarity=0.107  Sum_probs=131.8

Q ss_pred             CCCCcceeccccccccc--CCCcccccceEEeecCC--------C---------C--eEEeeecCCCCCccccccccCCC
Q 019380          121 CRGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDED--------E---------N--VIFHTYVQPQLPVTNYRYEVTGL  179 (342)
Q Consensus       121 ~~~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~--------~---------~--~~~~~lv~p~~~i~~~~~~i~GI  179 (342)
                      .....||+||+||||++  .++++|+ +.+.+.+..        |         +  ..|+++|+|..+|++.++++|||
T Consensus         9 ~~~~tfVv~DlETTGL~~~~d~IIEI-gaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhGI   87 (314)
T 3u3y_B            9 GHMQTLIFLDLEATGLPSSRPEVTEL-CLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGL   87 (314)
T ss_dssp             CCCSEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHSC
T ss_pred             cccCCEEEEEEECCCCCCCCCeEEEE-EEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcCC
Confidence            34567999999999986  6788888 777765331        0         2  26899999999999999999999


Q ss_pred             CHhhhcCC--CCh-HHHHHHHHHHHhcCCCccccccCCCCCeEEEeeC-chhhhhhcc-------ccCC--Ccceeeccc
Q 019380          180 TEEDIKNA--MPL-KEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR-------MNYP--DHMLRDTAK  246 (342)
Q Consensus       180 t~e~l~~~--~~~-~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~-------~~~~--~~~~~Dt~~  246 (342)
                      |+++|+++  |+| ++|+++|.+|+...          +...+||||| +.||+.||+       +..+  ...++||+.
T Consensus        88 T~e~l~~aG~P~f~~ev~~~l~~fL~~~----------~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~~~~~~~iDTL~  157 (314)
T 3u3y_B           88 SKAELEVQGRQRFDDNLAILLRAFLQRQ----------PQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIA  157 (314)
T ss_dssp             CHHHHHHTTCCBSCHHHHHHHHHHHHTS----------CSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHH
T ss_pred             CHHHHHhCCCCCcHHHHHHHHHHHHhcC----------CCCcEEEEeCcHHHHHHHHHHHHHHcCCCCCCCCceEEeHHH
Confidence            99999999  899 69999999999210          0238999999 999999998       2222  245789987


Q ss_pred             ----cccccccC----CCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          247 ----YRPLMKTN----LVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       247 ----l~~~~~~~----~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                          +.+..+|.    ..+++|++|+++|+|++. .++|+|++||++|++||.++.+++.+
T Consensus       158 l~r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~-~~aHrAl~DA~ata~lf~~l~~~~l~  217 (314)
T 3u3y_B          158 ALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAP-TDSHTAEGHVLTLLSICQWKPQALLQ  217 (314)
T ss_dssp             HHHHHHTTC-------CCCCSHHHHHHHHHSSCC-SCSSSHHHHHHHHHHHHHSSHHHHHH
T ss_pred             HHHHHHHHhCccccccCCCCCHHHHHHHhcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence                44455554    378999999999449994 46999999999999999988877644

>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5

Probab=99.91  E-value=7.2e-25  Score=194.84  Aligned_cols=166  Identities=19%  Similarity=0.183  Sum_probs=128.5

Q ss_pred             CCCcceeccccccccc--CCCcccccceEEeecC--------------CCCe--EEeeecCCCCCccccccccCCCCHhh
Q 019380          122 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDE--------------DENV--IFHTYVQPQLPVTNYRYEVTGLTEED  183 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~--------------~~~~--~~~~lv~p~~~i~~~~~~i~GIt~e~  183 (342)
                      ....++++|+||||++  .++++++ +.+.+.+.              .+++  .|+++|+|..+|+++++.+||||+++
T Consensus         8 ~~~~~v~iD~ETTGl~~~~~~IieI-g~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~~~   86 (238)
T 1y97_A            8 RAETFVFLDLEATGLPSVEPEIAEL-SLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEG   86 (238)
T ss_dssp             CCSEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHH
T ss_pred             ccCeEEEEEeeCCCcCCCCCcEEEE-EEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCHHH
Confidence            3457999999999986  4667777 66666432              1244  49999999999999999999999999


Q ss_pred             h--cCCCChH-HHHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-------ccCCC-cceeecccccccc
Q 019380          184 I--KNAMPLK-EVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNYPD-HMLRDTAKYRPLM  251 (342)
Q Consensus       184 l--~~~~~~~-~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~~~-~~~~Dt~~l~~~~  251 (342)
                      |  .++|+|. +|++.|.+|+...          .++.+|||||+ .||+.||+       +.++. ..++||+.+++.+
T Consensus        87 l~~~~~p~f~~~v~~~l~~fl~~~----------~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~~~~~~iDt~~l~~~~  156 (238)
T 1y97_A           87 LARCRKAGFDGAVVRTLQAFLSRQ----------AGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGL  156 (238)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHTTS----------CSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHH
T ss_pred             HhhcCCCccHHHHHHHHHHHHHhC----------CCCCEEEecCchhhhHHHHHHHHHHcCCCCCCCCEEEEHHHHHHHH
Confidence            9  5789994 9999999999210          02389999999 99999998       22332 5689999998887


Q ss_pred             c---------cCCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          252 K---------TNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       252 ~---------~~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      .         |...+++|+.|++.++|++. .++|+|++||++|++||.++.++..+
T Consensus       157 ~~~~~p~~~~p~~~~~~L~~l~~~~~gi~~-~~~H~Al~Da~~ta~l~~~l~~~~~~  212 (238)
T 1y97_A          157 DRAHSHGTRARGRQGYSLGSLFHRYFRAEP-SAAHSAEGDVHTLLLIFLHRAAELLA  212 (238)
T ss_dssp             HHHC----------CCSHHHHHHHHHSSCC-C---CHHHHHHHHHHHHHHTHHHHHH
T ss_pred             HhccCccccCCCCCCCCHHHHHHHHhCCCC-ccCccHHHHHHHHHHHHHHHHHHHHH
Confidence            6         55578999999996449884 45999999999999999999877654

>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}

Probab=99.91  E-value=3.6e-25  Score=206.23  Aligned_cols=167  Identities=17%  Similarity=0.263  Sum_probs=134.8

Q ss_pred             CCcceeccccccccc------CCCcccccceEEeecCCCCeE--EeeecCCCC--CccccccccCCCCHhhhcCCCChHH
Q 019380          123 GPKAVAMDCEMVGGG------SNGTLDLCARVCLVDEDENVI--FHTYVQPQL--PVTNYRYEVTGLTEEDIKNAMPLKE  192 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~------~~~~~~il~~v~vv~~~~~~~--~~~lv~p~~--~i~~~~~~i~GIt~e~l~~~~~~~~  192 (342)
                      ...+|+||+||||++      .+.++++ +.+.+...+|+++  |+++|+|..  +|+++++.+||||+++|+++|+|.+
T Consensus       127 ~~~~vviD~ETTGl~~~~~~~~deIIEI-gaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~e  205 (349)
T 1zbu_A          127 YDYICIIDFEATCEEGNPPEFVHEIIEF-PVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ  205 (349)
T ss_dssp             CSEEEECCCEECCCTTCCTTCCCCEEEC-CEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHH
T ss_pred             CCeEEEEEEecCCCCCcCCCCCCeEEEE-EEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHH
Confidence            467899999999984      4578888 7777754467775  999999998  8999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhh-hcc-------ccCCC--cceeeccccccccccCC-CCccHH
Q 019380          193 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLD-SLR-------MNYPD--HMLRDTAKYRPLMKTNL-VSHSLK  261 (342)
Q Consensus       193 v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~-~l~-------~~~~~--~~~~Dt~~l~~~~~~~~-~~~~L~  261 (342)
                      |+.+|.+||.....       +....+|||||+.||+. ||+       +..|.  ..++|+..+++..++.. ..++|.
T Consensus       206 Vl~~f~~~l~~~~~-------~~~~~~lVaHNa~FD~~~fL~~~~~~~g~~~p~~~~~~iDt~~l~~~~~~~~~~~~~L~  278 (349)
T 1zbu_A          206 VLKKVIDLMKLKEL-------GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLT  278 (349)
T ss_dssp             HHHHHHHHHHHTTB-------TTTBCEEEEESSSHHHHTHHHHHHHHTTBCCCGGGSEEEEHHHHHHHHHTCCGGGGSHH
T ss_pred             HHHHHHHHHhcccc-------cCCCcEEEEECcHhhHHHHHHHHHHHhCCCCccccchHHHHHHHHHHHhcCCCCCCCHH
Confidence            99999999943210       11226999999999999 997       23342  36899988876654422 248999


Q ss_pred             HHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhh
Q 019380          262 YLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       262 ~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~  298 (342)
                      .|+++| |+++.+.+|+|++||++|++||.+++++..
T Consensus       279 ~l~~~~-gi~~~g~~HrAl~DA~ata~ll~~ll~~~~  314 (349)
T 1zbu_A          279 IMLEKL-GMDYDGRPHCGLDDSKNIARIAVRMLQDGC  314 (349)
T ss_dssp             HHHHHT-TCCCCSCTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHc-CCCCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            999988 998765589999999999999999998753

>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5

Probab=99.91  E-value=4.6e-25  Score=194.32  Aligned_cols=169  Identities=20%  Similarity=0.238  Sum_probs=133.2

Q ss_pred             CCCcceecccccccccC--CCcccccceEEeec-CCCCe----EEeeecCC--CCCccccccccCCCCHhh-hcCCCChH
Q 019380          122 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVD-EDENV----IFHTYVQP--QLPVTNYRYEVTGLTEED-IKNAMPLK  191 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~-~~~~~----~~~~lv~p--~~~i~~~~~~i~GIt~e~-l~~~~~~~  191 (342)
                      ....++++|+||||+++  +.++++ +.+.+.. .+|++    .|+++|+|  ..+|+++++++||||+++ +++++++.
T Consensus        27 ~~~~~vviD~ETTGl~~~~~~IieI-g~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~~~~~  105 (224)
T 2f96_A           27 RGYLPVVVDVETGGFNSATDALLEI-AATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEE  105 (224)
T ss_dssp             TTEEEEEEEEEESSSCTTTBCEEEE-EEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHH
T ss_pred             cCCcEEEEEeeCCCCCCCCCeeEEE-EEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHH
Confidence            34468999999999874  467777 6666642 25664    48999999  578999999999999975 89999999


Q ss_pred             HHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccc-----cC---C--CcceeeccccccccccCCCCccHH
Q 019380          192 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-----NY---P--DHMLRDTAKYRPLMKTNLVSHSLK  261 (342)
Q Consensus       192 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-----~~---~--~~~~~Dt~~l~~~~~~~~~~~~L~  261 (342)
                      +|+.+|.+||.+.-     ...+.++.+|||||+.||+.||+.     ..   |  ...++||+.+++.+++   +++|.
T Consensus       106 ~v~~~~~~~l~~~~-----~~~~~~~~~lV~hn~~FD~~fL~~~~~~~g~~~~p~~~~~~iDt~~l~~~~~~---~~~L~  177 (224)
T 2f96_A          106 AALTEIFRGIRKAL-----KANGCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYG---QTVLA  177 (224)
T ss_dssp             HHHHHHHHHHHHHH-----HHTTCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHS---CCSHH
T ss_pred             HHHHHHHHHHHHHh-----hhcccCCCEEEEeChhhhHHHHHHHHHHcCCCcCCccccceeeHHHHHHHHcC---CCCHH
Confidence            99999999982100     000013689999999999999982     22   2  2468999999988775   46899


Q ss_pred             HHHHHHhCCcCCC-CCCCcHHHHHHHHHHHHHHHhhhhhh
Q 019380          262 YLTRTYLGYDIQS-GVHDPYEDCVSVMRLYKRFRRQDHQV  300 (342)
Q Consensus       262 ~l~~~~~~~~~~~-~~H~A~~Da~~t~~l~~~~~~~~~~~  300 (342)
                      .|++.| |+++.. .+|+|++||++|++||.+++++..++
T Consensus       178 ~l~~~~-gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~  216 (224)
T 2f96_A          178 KACQAA-GMEFDNREAHSARYDTEKTAELFCGIVNRWKEM  216 (224)
T ss_dssp             HHHHHT-TCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHc-CCCcCCCCCCChHHHHHHHHHHHHHHHHHHHHh
Confidence            999988 998653 59999999999999999999987664

>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A

Probab=99.90  E-value=9.5e-25  Score=185.85  Aligned_cols=153  Identities=18%  Similarity=0.215  Sum_probs=115.2

Q ss_pred             CCcceecccccccccC--CCcccccceEEeecCCCCeE---EeeecCCCCCccccc-------cccCCCCHhhhcCCCCh
Q 019380          123 GPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVI---FHTYVQPQLPVTNYR-------YEVTGLTEEDIKNAMPL  190 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~~---~~~lv~p~~~i~~~~-------~~i~GIt~e~l~~~~~~  190 (342)
                      ..+++++|+||||+++  ++++++ +.+ +++.++.++   |+++|+|..++++..       +.+||||+++++++|++
T Consensus         4 ~~~~v~iD~ETTGl~~~~~~IieI-g~v-~~~~~~~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~~~~~   81 (180)
T 2igi_A            4 ENNLIWIDLEMTGLDPERDRIIEI-ATL-VTDANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGD   81 (180)
T ss_dssp             GGCEEEEEEEESSSCTTTCCEEEE-EEE-EECTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCH
T ss_pred             CCcEEEEEeeCCCCCCCCCceEEE-EEE-EEcCCCcEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhcCCCH
Confidence            3469999999999874  567777 666 556677664   999999998776544       56699999999999999


Q ss_pred             HHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccccCC------Ccceee--cc-ccccccccCCCCccHH
Q 019380          191 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------DHMLRD--TA-KYRPLMKTNLVSHSLK  261 (342)
Q Consensus       191 ~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~------~~~~~D--t~-~l~~~~~~~~~~~~L~  261 (342)
                      .+|+++|.+|+....        +++..+|||||+.||+.||+..++      ..+++|  |+ .+++.+.|..      
T Consensus        82 ~~v~~~~~~~l~~~~--------~~~~~~lv~hn~~fD~~fL~~~~~~~~~~~~~~~~d~~tl~~l~~~~~p~~------  147 (180)
T 2igi_A           82 REAELATLEFLKQWV--------PAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEI------  147 (180)
T ss_dssp             HHHHHHHHHHHTTTS--------CTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHHCGGG------
T ss_pred             HHHHHHHHHHHHHhC--------CCCCceEEecCHHHHHHHHHHHHHHhccCCCcceeeHHHHHHHHHHhChHh------
Confidence            999999999992210        012479999999999999994432      144678  55 2555544431      


Q ss_pred             HHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhh
Q 019380          262 YLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       262 ~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                        .  . |+. ..++|+|++||++|++||.++++..
T Consensus       148 --~--~-~i~-~~~~H~Al~Da~ata~l~~~~~~~~  177 (180)
T 2igi_A          148 --L--D-GFT-KQGTHQAMDDIRESVAELAYYREHF  177 (180)
T ss_dssp             --G--G-GSC-CCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             --h--h-CCC-CcCCcCcHHHHHHHHHHHHHHHHHh
Confidence              0  1 554 4459999999999999999998874

>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A

Probab=99.89  E-value=9.7e-24  Score=187.20  Aligned_cols=168  Identities=21%  Similarity=0.254  Sum_probs=133.6

Q ss_pred             CCCcceeccccccccc--CCCcccccceEEee-cCCCCe----EEeeecCC--CCCccccccccCCCCHh-hhcCCCChH
Q 019380          122 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLV-DEDENV----IFHTYVQP--QLPVTNYRYEVTGLTEE-DIKNAMPLK  191 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~--~~~~~~il~~v~vv-~~~~~~----~~~~lv~p--~~~i~~~~~~i~GIt~e-~l~~~~~~~  191 (342)
                      ....++++|+||||++  .++++++ +.+.+. +.+|.+    .|+.+|+|  ..+++++++++||||++ +++++|++.
T Consensus        35 ~~~~~vviD~ETTGl~~~~~~IieI-gav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~~~~~  113 (235)
T 3v9w_A           35 RGFYPVVIDVETAGFNAKTDALLEI-AAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGAVSGY  113 (235)
T ss_dssp             TTEEEEEEEEEESSSCTTTBCEEEE-EEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCCBCHH
T ss_pred             cCCcEEEEEEeCCCCCCCCCeEEEE-EEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcCCCHH
Confidence            3456899999999986  4556666 666553 235664    48999999  57899999999999999 999999999


Q ss_pred             HHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccc-----cC---CC--cceeeccccccccccCCCCccHH
Q 019380          192 EVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRM-----NY---PD--HMLRDTAKYRPLMKTNLVSHSLK  261 (342)
Q Consensus       192 ~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~-----~~---~~--~~~~Dt~~l~~~~~~~~~~~~L~  261 (342)
                      +++++|.+|+.+.-.     ..+.++.++||||+.||+.||+.     ..   |.  ..++||+.+++.++|.   ++|+
T Consensus       114 ~vl~~~~~~l~~~~~-----~~~~~~~~lVahN~~fD~~~L~~~~~~~g~~~~p~~~~~~~Dt~~la~~~~p~---~~L~  185 (235)
T 3v9w_A          114 EALHEIFKVVRKGIK-----ASGCNRAIMVAHNANFDHSFMMAAAERASLKRNPFHPFATFDTAALAGLALGQ---TVLS  185 (235)
T ss_dssp             HHHHHHHHHHHHHHT-----TTTCCEEEEEETTTHHHHHHHHHHHHHTTCCCCCEEEEEEEEHHHHHHHHHSC---CSHH
T ss_pred             HHHHHHHHHHHHHhh-----hccCCCcEEEEeChHHHHHHHHHHHHHcCCCCCCCCCCcEEEhHHHHHHHhCC---CCHH
Confidence            999999999932100     00014789999999999999972     22   22  4589999999988763   7999


Q ss_pred             HHHHHHhCCcCCC-CCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          262 YLTRTYLGYDIQS-GVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       262 ~l~~~~~~~~~~~-~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      .|++.| |+++.. .+|+|++||++|++||.+++++..+
T Consensus       186 ~l~~~~-gi~~~~~~~H~Al~DA~~ta~l~~~l~~~l~~  223 (235)
T 3v9w_A          186 KACQTA-GMDFDSTQAHSALYDTERTAVLFCEIVNRWKR  223 (235)
T ss_dssp             HHHHHH-TCCCCTTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHc-CCCCCCCCCcChHHHHHHHHHHHHHHHHHHHh
Confidence            999999 998754 5999999999999999999998765

>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}

Probab=99.88  E-value=4.9e-24  Score=181.37  Aligned_cols=154  Identities=16%  Similarity=0.171  Sum_probs=118.1

Q ss_pred             CCCcceeccccccccc--CCCcccccceEEeecCCCCeE---EeeecCCCC----Ccccc---ccccCCCCHhhhcCCCC
Q 019380          122 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVI---FHTYVQPQL----PVTNY---RYEVTGLTEEDIKNAMP  189 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~~---~~~lv~p~~----~i~~~---~~~i~GIt~e~l~~~~~  189 (342)
                      ...++|++|+||||++  .+.++|+ +.+ +++.++.++   +..+|+|+.    .+++.   ...+||||+++++++|+
T Consensus         7 ~~~~~v~~D~ETTGL~p~~d~IiEI-gaV-~~d~~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGIt~~~l~~~p~   84 (186)
T 3tr8_A            7 SDDNLIWLDLEMTGLDPERDRIIEI-ATI-VTNSHLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGLLERVKNSSVD   84 (186)
T ss_dssp             CTTCEEEEEEEESSSCTTTCCEEEE-EEE-EECTTCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSHHHHHHTCCCC
T ss_pred             CCCcEEEEEEECCCCCCCCCceEEE-EEE-EEcCCeEEeeeeEEEEEeCCccccccCCcccHHHHhccCCCHHHHhcCCC
Confidence            4568999999999987  5677777 777 766666654   455686443    12333   44567999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccccCC------Ccceee--ccc-cccccccCCCCccH
Q 019380          190 LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP------DHMLRD--TAK-YRPLMKTNLVSHSL  260 (342)
Q Consensus       190 ~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~------~~~~~D--t~~-l~~~~~~~~~~~~L  260 (342)
                      +++|+++|++||.....        .++.+|||||+.||+.||+..++      ..+++|  |+. |++.++|...    
T Consensus        85 ~~ev~~~~l~fl~~~~~--------~~~~~lvghn~~FD~~FL~~~~~~~~~~~~~~~iDvsTl~elar~~~P~~~----  152 (186)
T 3tr8_A           85 EVEAETLTLAFLEKYVS--------AGKSPLCGNSVCQDRRFLSRYMPRLNQFFHYRHLDVTTLKILAQRWAPQIA----  152 (186)
T ss_dssp             HHHHHHHHHHHHTTTSC--------TTCSCEEESSTHHHHHHHHHHCHHHHHHSCSCEEEHHHHHHHHHHHCHHHH----
T ss_pred             HHHHHHHHHHHHHHhcc--------CCCcEEEEEcHHHhHHHHHHHHHHcCCCCCCcEEeHHHHHHHHHHHCcccc----
Confidence            99999999999943221        25689999999999999994332      256899  886 8888887521    


Q ss_pred             HHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhh
Q 019380          261 KYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       261 ~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                       .      |++ ..++|+|++||++|.++++.+++..
T Consensus       153 -~------~~~-~~~~HrAl~Da~ati~~l~~y~~~~  181 (186)
T 3tr8_A          153 -A------AHI-KESQHLALQDIRDSIEELRYYRAHL  181 (186)
T ss_dssp             -T------TSC-CCCCSCHHHHHHHHHHHHHHHHHHT
T ss_pred             -c------cCC-CCCCcChHHHHHHHHHHHHHHHHHh
Confidence             1      556 4569999999999999999999875

>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}

Probab=99.88  E-value=2.8e-23  Score=178.86  Aligned_cols=148  Identities=16%  Similarity=0.290  Sum_probs=112.4

Q ss_pred             CCCcceecccccccccC--CCcccccceEEeecCCCCeE---EeeecCCCCCc----cccccc---cCCCCHhhhcCCCC
Q 019380          122 RGPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVI---FHTYVQPQLPV----TNYRYE---VTGLTEEDIKNAMP  189 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~~---~~~lv~p~~~i----~~~~~~---i~GIt~e~l~~~~~  189 (342)
                      ...+++++|+||||+++  +.++++ +.+. .+..+.++   |+++|+|..++    +++.+.   +||||+++++++|+
T Consensus         7 ~~~~~vviD~ETTGl~p~~d~IieI-gav~-~~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~~~p~   84 (194)
T 2gbz_A            7 GNDRLIWIDLEMTGLDTDRDSIIEI-ATIV-TDAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLDSQVT   84 (194)
T ss_dssp             -CCEEEEEEEEESCSCTTTCCEEEE-EEEE-EETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHHCCCC
T ss_pred             CCCCEEEEEeECCCCCCCCCccEEE-EEEE-EcCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHhcCCC
Confidence            34579999999999874  566766 6555 45554333   88999999776    444444   49999999999999


Q ss_pred             hHHHHHHHHHHHhcCCCccccccCCCCCeE------EEeeCchhhhhhccccCCC------cceeeccccccccccCCCC
Q 019380          190 LKEVKDKILEILNNGESTGRLMLDDGKARL------LVGHGLEHDLDSLRMNYPD------HMLRDTAKYRPLMKTNLVS  257 (342)
Q Consensus       190 ~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~------lvgh~~~~D~~~l~~~~~~------~~~~Dt~~l~~~~~~~~~~  257 (342)
                      +.+|+++|.+||              ++.+      |||||+.||+.||+..++.      .+.+|+.            
T Consensus        85 ~~ev~~~~~~~l--------------~~~~~~~~~~lvghn~~FD~~fL~~~~~~~~~~~~~~~~d~~------------  138 (194)
T 2gbz_A           85 HAQAEAQTVAFL--------------GEWIRAGASPMCGNSICQDRRFLHRQMSRLERYFHYRNLDVS------------  138 (194)
T ss_dssp             HHHHHHHHHHHH--------------TTTCCTTSSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEEHH------------
T ss_pred             HHHHHHHHHHHH--------------HHhCCCCCceEEecCHHHhHHHHHHHHHHhcccCCCccccHH------------
Confidence            999999999999              5555      9999999999999955432      2334433            


Q ss_pred             ccHHHHHHHHh-----CCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          258 HSLKYLTRTYL-----GYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       258 ~~L~~l~~~~~-----~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                       +|..|++.++     +++ ..++|+|++||++|++||.++++++..
T Consensus       139 -~l~~l~~~~~p~~~~~i~-~~~~H~Al~Da~ata~ll~~~~~~~~~  183 (194)
T 2gbz_A          139 -TIKELARRWAPAVASGFA-KSSAHTALSDVRDSIDELRHYRQFMGT  183 (194)
T ss_dssp             -HHHHHHHHHCGGGGTTCC-CCSCCSHHHHHHHHHHHHHHHHTTSHH
T ss_pred             -HHHHHHHHhCHHHHhCCC-CCCCcccHHHHHHHHHHHHHHHHHhcc
Confidence             4556666662     243 345999999999999999999998754

>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*

Probab=99.87  E-value=7.7e-23  Score=197.57  Aligned_cols=164  Identities=18%  Similarity=0.195  Sum_probs=127.5

Q ss_pred             CCcceecccccccccC--CCcccccceEEeecCCCCeE---EeeecCCCCCc--cccccccCCCCHhhhcCCCCh-HHHH
Q 019380          123 GPKAVAMDCEMVGGGS--NGTLDLCARVCLVDEDENVI---FHTYVQPQLPV--TNYRYEVTGLTEEDIKNAMPL-KEVK  194 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~~--~~~~~il~~v~vv~~~~~~~---~~~lv~p~~~i--~~~~~~i~GIt~e~l~~~~~~-~~v~  194 (342)
                      ...++++|+||||+++  +.++++ +.+.+ +.+|.++   |+++|+|..++  .+.++.+||||+++|.+++.+ .+|+
T Consensus         8 ~~~~vv~DlETTGl~p~~d~IIEI-gaV~v-d~~g~ii~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~~~evl   85 (482)
T 2qxf_A            8 QSTFLFHDYETFGTHPALDRPAQF-AAIRT-DSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFA   85 (482)
T ss_dssp             CCEEEEEEEEESSSCTTTSCEEEE-EEEEE-CTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHH
T ss_pred             CCCEEEEEEECCCCCCCCCeEEEE-EEEEE-ECCCeEEeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCCHHHHH
Confidence            3469999999999873  567777 55544 5567765   99999999887  567889999999999987755 9999


Q ss_pred             HHHHHHHhcCCCccccccCCCCCeEEEeeC-chhhhhhcccc-----C---C--C---cceeecccccccccc-------
Q 019380          195 DKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRMN-----Y---P--D---HMLRDTAKYRPLMKT-------  253 (342)
Q Consensus       195 ~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~~~-----~---~--~---~~~~Dt~~l~~~~~~-------  253 (342)
                      .+|.+|+            +..+.+||||| +.||+.||+..     .   +  +   ...+||..+++..++       
T Consensus        86 ~~f~~~l------------~~~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~~~w~~~~~~iDtl~l~r~~~~~~~~~~~  153 (482)
T 2qxf_A           86 ARIHSLF------------TVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGIN  153 (482)
T ss_dssp             HHHHHHH------------TSTTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSC
T ss_pred             HHHHHHH------------cCCCCEEEEECCHHHHHHHHHHHHHHhCCCccccccccCCceeeHHHHHHHHHHhCccccc
Confidence            9999999            11289999999 99999999821     1   1  1   457899887776542       


Q ss_pred             ------CCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhhhhh
Q 019380          254 ------NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEE  302 (342)
Q Consensus       254 ------~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~~~~  302 (342)
                            +..+++|+.|+..+ |++. .++|+|++||++|++||.++.++...+.+
T Consensus       154 wP~~~~~~~s~kL~~L~~~~-Gi~~-~~aHrAL~DA~aTa~l~~~l~~~~p~l~~  206 (482)
T 2qxf_A          154 WPENDDGLPSFRLEHLTKAN-GIEH-SNAHDAMADVYATIAMAKLVKTRQPRLFD  206 (482)
T ss_dssp             CCBCTTSSBCCCHHHHHHHT-TCCC-C---CTTHHHHHHHHHHHHHHHHSHHHHH
T ss_pred             CcccccCCCCCCHHHHHHHc-CCCC-CCCCCHHHHHHHHHHHHHHHHHhChhhhH
Confidence                  34578999999988 9884 45899999999999999999877654443

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.70  E-value=5e-18  Score=136.91  Aligned_cols=88  Identities=22%  Similarity=0.336  Sum_probs=78.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc---CCCcccCCCCCcccCCccccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLC   84 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~~C~~C   84 (342)
                      ..|+++|+|+.|++.|.++..|..|+++  |+++++ .|..|++.|.+...|..|+   ++..++          .|+.|
T Consensus        17 h~Gek~y~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C~k~F~~~~~L~~H~~~H~~~k~~----------~C~~C   84 (133)
T 2lt7_A           17 VDGRVYYICIVCKRSYVCLTSLRRHFNI--HSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRY----------QCLAC   84 (133)
T ss_dssp             ETTEEEEEETTTCCEESCHHHHHHHHHH--HHCCSCEECSSSSCEESSHHHHHHHHHHHHTCCCE----------EESSS
T ss_pred             cCCCcCeECCCCCCCcCCHHHHHHHHHH--cCCCCCeeCCccCeecccccchhhhccccCCCccc----------cCCCC
Confidence            4689999999999999999999999999  998888 9999999999999999998   333332          46889


Q ss_pred             ccccCChhhHHHHHhhcCCCCCCC
Q 019380           85 MNIFDSPSSLIKHKEACSLSAPVP  108 (342)
Q Consensus        85 ~k~F~~~~~L~~H~~~h~~~~~~~  108 (342)
                      |++|..++.|..|+++|++++|..
T Consensus        85 ~k~F~~~~~L~~H~~~hh~~~p~~  108 (133)
T 2lt7_A           85 GKSFINYQFMSSHIKSVHSQDPSG  108 (133)
T ss_dssp             CCEESSHHHHHHHHHHHTCCCTTS
T ss_pred             CCCcCCHHHHHHHhHHhcCCCCCC
Confidence            999999999999999999887644

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.69  E-value=8.1e-18  Score=143.67  Aligned_cols=106  Identities=28%  Similarity=0.482  Sum_probs=69.2

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCc---
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRG---   80 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~---   80 (342)
                      +++++|.|+.|++.|.....|..|++.  |.+.++ .|..|++.|.+...|..|+     .++|.|+.|++.|....   
T Consensus        17 ~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~   94 (190)
T 2i13_A           17 PGEKPYACPECGKSFSRSDHLAEHQRT--HTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLR   94 (190)
T ss_dssp             --------------CCSSHHHHHGGGC--C---CCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEESCHHHHH
T ss_pred             CCCCCCcCCCCccccCCHHHHHHHHHH--cCCCCCccCCCcCchhCCHHHHHHHHHhcCCCCCccCcccCCccCCHHHHH
Confidence            467788888888888888888888887  776666 8888888888888888887     45778888888887542   


Q ss_pred             -------------ccccccccCChhhHHHHHhhcCCCCCCCCcccccccc
Q 019380           81 -------------CNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDE  117 (342)
Q Consensus        81 -------------C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~~  117 (342)
                                   |+.|++.|.....|..|++.|++++++.|+.|++...
T Consensus        95 ~H~~~h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~  144 (190)
T 2i13_A           95 AHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFS  144 (190)
T ss_dssp             HHHHHHHTCCCEECTTTCCEESSHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             HHHHhcCCCCCCcCCCCCCccCCHHHHHHHHHHhCCCCCeECCCCCcccC
Confidence                         7888888888888888888888888888888776554

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=99.67  E-value=1.4e-17  Score=142.24  Aligned_cols=106  Identities=26%  Similarity=0.450  Sum_probs=96.1

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCc---
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRG---   80 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~---   80 (342)
                      +++++|+|+.|++.|..+..|..|+++  |.+.++ .|..|++.|.+...|..|+     .++|.|+.|++.|....   
T Consensus        45 ~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~~~~~l~  122 (190)
T 2i13_A           45 TGEKPYKCPECGKSFSDKKDLTRHQRT--HTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLR  122 (190)
T ss_dssp             ---CCEECTTTCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHHHHHHTCCCEECTTTCCEESSHHHHH
T ss_pred             CCCCCccCCCcCchhCCHHHHHHHHHh--cCCCCCccCcccCCccCCHHHHHHHHHhcCCCCCCcCCCCCCccCCHHHHH
Confidence            478899999999999999999999999  777777 9999999999999999998     57899999999998753   


Q ss_pred             -------------ccccccccCChhhHHHHHhhcCCCCCCCCcccccccc
Q 019380           81 -------------CNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDE  117 (342)
Q Consensus        81 -------------C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~~  117 (342)
                                   |+.|++.|...+.|..|+++|++++++.|+.|++...
T Consensus       123 ~H~~~h~~~~~~~C~~C~~~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~  172 (190)
T 2i13_A          123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFS  172 (190)
T ss_dssp             HHHHHHHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEECTTTCCEES
T ss_pred             HHHHHhCCCCCeECCCCCcccCCHHHHHHHHHhcCCCCCeECCCCCCccC
Confidence                         9999999999999999999999999999999987654

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.66  E-value=1.6e-16  Score=125.57  Aligned_cols=94  Identities=23%  Similarity=0.357  Sum_probs=73.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc--------CCCcccCCCCCcccCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL--------TGPLSKAHCSGIFSDR   79 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~--------~~~~~C~~C~k~f~~~   79 (342)
                      ++++++|+|+.|++.|.....|..|+++  |.++++ .|..|++.|.+...|..|+        ..+|.           
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~-----------   68 (124)
T 2dlq_A            2 SSGSSGVECPTCHKKFLSKYYLKVHNRK--HTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT-----------   68 (124)
T ss_dssp             CCCCSSCCCTTTCCCCSSHHHHHHHHHH--HSSCCSCBCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEE-----------
T ss_pred             CCCCCCCCCCCCCCcCCCHHHHHHHHHh--CCCCCCeECCCCCchhcCHHHHHHHHhhhhcCCCCCCeE-----------
Confidence            5789999999999999999999999999  887777 9999999999999999997        22444           


Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAID  116 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~  116 (342)
                       |+.|++.|.....|..|++.|++++++.|+.|++..
T Consensus        69 -C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f  104 (124)
T 2dlq_A           69 -CSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQF  104 (124)
T ss_dssp             -CSSSCCEESSHHHHHHHHHHHSSSCSEECSSSCCEE
T ss_pred             -CCCCCCccCCHHHHHHHHHHcCCCCCccCCCccchh
Confidence             455666666666666666666666666666665543

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.64  E-value=2.3e-16  Score=134.53  Aligned_cols=107  Identities=20%  Similarity=0.307  Sum_probs=95.5

Q ss_pred             CCCCcccc--cccccccCCHHHHHHHHhhhccCCCCC-cc--ccCccccCChhhhhhhc-----CCCcccC--CCCCccc
Q 019380           10 RSTARHKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KC--AVCQKLSKSFESLREHL-----TGPLSKA--HCSGIFS   77 (342)
Q Consensus        10 ~~~~~~~C--~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C--~~C~~~f~~~~~l~~H~-----~~~~~C~--~C~k~f~   77 (342)
                      .++++|.|  +.|++.|.....|..|+++  |+++++ .|  ..|++.|.+...|..|+     .++|.|+  .|++.|.
T Consensus         8 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   85 (190)
T 1tf6_A            8 VVYKRYICSFADCGAAYNKNWKLQAHLCK--HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFT   85 (190)
T ss_dssp             --CCCCBCSSTTTCCBCSSHHHHHHHHHH--HHCCCSSCCSSTTCCCCCSSHHHHHHHHTTTTTCCCEECCSSSCCCEES
T ss_pred             CCCcceeCCCCCCcchhCCHHHHHHHHHh--cCCCCCccCCCCCCChhhCCHHHHHHHHHHccCCCceeCCCCCCCCccC
Confidence            48999999  7899999999999999999  887777 99  88999999999999998     4689999  8999997


Q ss_pred             CC------------------cc--cccccccCChhhHHHHHhhcCCCCCCCCcc--ccccccc
Q 019380           78 DR------------------GC--NLCMNIFDSPSSLIKHKEACSLSAPVPFKI--SGAIDEK  118 (342)
Q Consensus        78 ~~------------------~C--~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~--c~~~~~~  118 (342)
                      ..                  .|  +.|++.|...+.|..|+++|++++++.|+.  |++....
T Consensus        86 ~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~  148 (190)
T 1tf6_A           86 TKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL  148 (190)
T ss_dssp             CHHHHHHHHHTTSSTTTSCCEECSSSSCEECSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSS
T ss_pred             CHHHHHHHHHHhcCCCcceeeCCCCCCccccCCHHHHHHHHHHhCCCCCccCCCCCCCchhcC
Confidence            53                  28  889999999999999999999999999988  9887653

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.61  E-value=5.2e-16  Score=121.84  Aligned_cols=95  Identities=20%  Similarity=0.419  Sum_probs=81.2

Q ss_pred             CCCCCcccccc--cccccCCHHHHHHHHhhhccCCCCC-ccc--cCccccCChhhhhhhc-----CCCcccCCCCCcccC
Q 019380            9 KRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-----TGPLSKAHCSGIFSD   78 (342)
Q Consensus         9 ~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~   78 (342)
                      ++++++|.|+.  |++.|.....|..|+++  |.+.++ .|.  .|++.|.+...|..|+     .++|.          
T Consensus         1 a~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~----------   68 (119)
T 2jp9_A            1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRK--HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQ----------   68 (119)
T ss_dssp             CCSSCCBCCCSTTSCCCBSCHHHHHHHHHH--HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHCCCCEE----------
T ss_pred             CCCCeeeeCCCCCCcchhCCHHHHHHHHHh--hCCCCCccCCCCCCcCccCCHHHHHHHHHHcCCCCCcc----------
Confidence            46899999986  99999999999999999  887777 998  7999999999999998     34454          


Q ss_pred             CcccccccccCChhhHHHHHhhcCCCCCCCC--cccccccc
Q 019380           79 RGCNLCMNIFDSPSSLIKHKEACSLSAPVPF--KISGAIDE  117 (342)
Q Consensus        79 ~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~--~~c~~~~~  117 (342)
                        |+.|++.|.....|..|++.|++++++.|  +.|++...
T Consensus        69 --C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~  107 (119)
T 2jp9_A           69 --CKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFA  107 (119)
T ss_dssp             --CTTTCCEESCHHHHHHHHHHHHTCCCEECCSTTCCCEES
T ss_pred             --CCccCchhCCHHHHHHHHHHhcCCCCeeCCCCCCccccC
Confidence              57788888888888888888888888888  77876543

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=99.61  E-value=2.6e-15  Score=115.51  Aligned_cols=93  Identities=23%  Similarity=0.458  Sum_probs=80.6

Q ss_pred             CCCCCCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc---CCCcccCCCCCcccCCc
Q 019380            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRG   80 (342)
Q Consensus         5 ~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~~   80 (342)
                      ...++..+++|.|+.|++.|.....|..|+++  |.+.++ .|..|++.|.....|..|+   .+..+.          .
T Consensus         8 ~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~----------~   75 (106)
T 2ee8_A            8 GRLPSKTKKEFICKFCGRHFTKSYNLLIHERT--HTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF----------K   75 (106)
T ss_dssp             CCCCCCCCCCCBCSSSCCBCSSHHHHHHHHHH--HCCSCCCBCSSSCCBCSCHHHHHHHGGGSCCCCTT----------S
T ss_pred             CcCCcCCCcCeECCCCCCccCCHHHHHHHHHH--cCCCCCcCCCCccchhCCHHHHHHHHHHhCCCCCe----------E
Confidence            34567789999999999999999999999999  887776 9999999999999999998   222222          4


Q ss_pred             ccccccccCChhhHHHHHhhcCCCCCCCC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~~~~~~~~  109 (342)
                      |+.|++.|.....|..|+++|++++++..
T Consensus        76 C~~C~~~f~~~~~L~~H~~~H~~~~~~~~  104 (106)
T 2ee8_A           76 CQECGKGFCQSRTLAVHKTLHMQTSSPTA  104 (106)
T ss_dssp             CSSSCCCCSSHHHHHHHHHHTTSCCCCCC
T ss_pred             CCCcCCcccCHHHHHHHHHHhCCCCCCcC
Confidence            78899999999999999999999998753

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=99.60  E-value=1.2e-15  Score=125.60  Aligned_cols=100  Identities=21%  Similarity=0.369  Sum_probs=86.9

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCC---------CccccCccccCChhhhhhhc-----CCCcccCC--CC
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ---------PKCAVCQKLSKSFESLREHL-----TGPLSKAH--CS   73 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~---------~~C~~C~~~f~~~~~l~~H~-----~~~~~C~~--C~   73 (342)
                      ..+++|.|+.|++.|.+...|..|++.+ |.+..         +.|..|++.|.+...|..|+     .++|.|..  |+
T Consensus        21 ~~~~~~~C~~C~~~f~~~~~L~~H~~~~-H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~   99 (155)
T 2rpc_A           21 EAQLSRPKKSCDRTFSTMHELVTHVTME-HVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCG   99 (155)
T ss_dssp             TTCCSSSCCCCCCCBSSHHHHHHHHHTT-TSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTC
T ss_pred             hhhcccccccCCcccCCHHHHHHHHHhh-cCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCC
Confidence            4567899999999999999999999863 66544         47999999999999999998     57899987  99


Q ss_pred             CcccCCc----------------ccc--cccccCChhhHHHHHhhcCCCCCCCCc
Q 019380           74 GIFSDRG----------------CNL--CMNIFDSPSSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        74 k~f~~~~----------------C~~--C~k~F~~~~~L~~H~~~h~~~~~~~~~  110 (342)
                      +.|....                |+.  |++.|...+.|..|+++|++++++.|+
T Consensus       100 ~~f~~~~~L~~H~~~h~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~c~  154 (155)
T 2rpc_A          100 KIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS  154 (155)
T ss_dssp             CEESCHHHHHHHHTTTCSSCSBCCSSTTCCCCBSSHHHHHHSSTTTTSCCCSCSC
T ss_pred             CccCCHHHHHHHHHhhCCCCCccCCCCCCCCccCCHHHHHHHHHHhcCCCCCCCC
Confidence            9998642                886  999999999999999999999998875

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.59  E-value=2e-15  Score=113.94  Aligned_cols=86  Identities=33%  Similarity=0.566  Sum_probs=76.8

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCcc
Q 019380            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGC   81 (342)
Q Consensus         8 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C   81 (342)
                      ++.+++||+|+.|++.|.....|..|++.  |.+.++ .|..|++.|.....|..|+     .++|            .|
T Consensus         2 s~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~------------~C   67 (96)
T 2dmd_A            2 SSGSSGPHKCEVCGKCFSRKDKLKTHMRC--HTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPF------------KC   67 (96)
T ss_dssp             CCCCCCCCCBTTTTBCCCCHHHHHHHGGG--CCCCCSEECSSSCCEESSHHHHHHHHHHSCCCCCE------------EC
T ss_pred             CCCCCcCeECCCCCCccCCHHHHHHHHHh--cCCCCCEeCCCCCCccCCHHHHHHHHHHhCCCCCc------------cC
Confidence            35789999999999999999999999999  888777 9999999999999999998     2334            46


Q ss_pred             cccccccCChhhHHHHHhhcCCCCCC
Q 019380           82 NLCMNIFDSPSSLIKHKEACSLSAPV  107 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~~~h~~~~~~  107 (342)
                      +.|++.|.....|..|+++|+++++.
T Consensus        68 ~~C~~~f~~~~~l~~H~~~h~~~~~p   93 (96)
T 2dmd_A           68 QICPYASRNSSQLTVHLRSHTGDSGP   93 (96)
T ss_dssp             SSSSCEESSHHHHHHHHTTCCSCCCC
T ss_pred             CCCCCccCCHHHHHHHHHHhcCCCCC
Confidence            88999999999999999999988764

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=99.58  E-value=1.1e-15  Score=121.01  Aligned_cols=86  Identities=21%  Similarity=0.332  Sum_probs=61.9

Q ss_pred             CCCccccc--ccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCccc
Q 019380           11 STARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (342)
Q Consensus        11 ~~~~~~C~--~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~   82 (342)
                      ++++|+|+  .|++.|.+...|..|+++  | +.++ .|..|++.|.+...|..|+     .++|.|..          +
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h-~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~----------~   68 (124)
T 1ubd_C            2 EPRTIACPHKGCTKMFRDNSAMRKHLHT--H-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTF----------E   68 (124)
T ss_dssp             ---CEECCSTTCCCEESSHHHHHHHHGG--G-SCCCEECTTTCCEESSHHHHHHHGGGTSCCCCEECCS----------T
T ss_pred             CCCcccCCCCCCcCccCCHHHHHHHHHH--c-CCCCeECCCCCchhCCHHHHHHHHHHcCCCCCeeCCC----------C
Confidence            56899999  899999999999999999  8 5555 9999999999999999998     35677743          1


Q ss_pred             ccccccCChhhHHHHHhhcCCCCCCCC
Q 019380           83 LCMNIFDSPSSLIKHKEACSLSAPVPF  109 (342)
Q Consensus        83 ~C~k~F~~~~~L~~H~~~h~~~~~~~~  109 (342)
                      .|++.|.....|..|+++|++++++.|
T Consensus        69 ~C~~~f~~~~~l~~H~~~h~~~~~~~C   95 (124)
T 1ubd_C           69 GCGKRFSLDFNLRTHVRIHTGDRPYVC   95 (124)
T ss_dssp             TCCCEESCHHHHHHHHHHHHCCCCCCC
T ss_pred             CCcCccCCHHHHHHHHHHhCCCCceEC
Confidence            244444555555555555555555554

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.55  E-value=6.9e-15  Score=120.93  Aligned_cols=106  Identities=20%  Similarity=0.338  Sum_probs=89.6

Q ss_pred             CCcccccccccccCCHHHHHHHHhhh-ccCCCCC-ccc-----cCccccCChhhhhhhc-----CCCcccCC--CCCccc
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKIS-YHSVHQP-KCA-----VCQKLSKSFESLREHL-----TGPLSKAH--CSGIFS   77 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~-~H~~~~~-~C~-----~C~~~f~~~~~l~~H~-----~~~~~C~~--C~k~f~   77 (342)
                      |.+|+|+.|++.|.++..|..|++.+ .|++.++ .|.     .|++.|.+...|..|+     .++|.|+.  |++.|.
T Consensus         1 E~~~~C~~C~~~f~~~~~L~~H~~~~h~h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~   80 (155)
T 2gli_A            1 ETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYS   80 (155)
T ss_dssp             CCBCCBTTCCCBCSCHHHHHHHHHHHTSSSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHHHHCCCCCCCCSTTCCCCCS
T ss_pred             CCcCCcCCCccccCCHHHHHHHHHhhccCCCCcceeCCCCCccchhhhhhhHHHHHHHHHhcCCCCCccCCCCCCCCccc
Confidence            56899999999999999999999821 2777766 554     4569999999999998     57899975  999998


Q ss_pred             CCc----------------ccc--cccccCChhhHHHHH-hhcCCCCCCCCcc--cccccc
Q 019380           78 DRG----------------CNL--CMNIFDSPSSLIKHK-EACSLSAPVPFKI--SGAIDE  117 (342)
Q Consensus        78 ~~~----------------C~~--C~k~F~~~~~L~~H~-~~h~~~~~~~~~~--c~~~~~  117 (342)
                      ...                |+.  |++.|...+.|..|+ +.|.+++++.|+.  |++...
T Consensus        81 ~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~  141 (155)
T 2gli_A           81 RLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYT  141 (155)
T ss_dssp             SHHHHHHHHHHTTTCCCEECCSTTCCCEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEES
T ss_pred             CHHHHHHHHHHcCCCCCeeCCCCCCCCccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccC
Confidence            752                998  999999999999998 7999999999988  877643

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=99.53  E-value=8.9e-15  Score=124.67  Aligned_cols=102  Identities=22%  Similarity=0.417  Sum_probs=90.5

Q ss_pred             CCCCcccc--cccccccCCHHHHHHHHhhhccCCCCC-ccc--cCccccCChhhhhhhc-------CCCccc--CCCCCc
Q 019380           10 RSTARHKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-------TGPLSK--AHCSGI   75 (342)
Q Consensus        10 ~~~~~~~C--~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-------~~~~~C--~~C~k~   75 (342)
                      +++++|+|  +.|++.|.++..|..|+++  |.++++ .|.  .|++.|.+...|..|+       .++|.|  +.|++.
T Consensus        38 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~~h~~~~~~~~C~~~~C~k~  115 (190)
T 1tf6_A           38 TGEKPFPCKEEGCEKGFTSLHHLTRHSLT--HTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKA  115 (190)
T ss_dssp             HCCCSSCCSSTTCCCCCSSHHHHHHHHTT--TTTCCCEECCSSSCCCEESCHHHHHHHHHTTSSTTTSCCEECSSSSCEE
T ss_pred             CCCCCccCCCCCCChhhCCHHHHHHHHHH--ccCCCceeCCCCCCCCccCCHHHHHHHHHHhcCCCcceeeCCCCCCccc
Confidence            36789999  8899999999999999999  888877 999  8999999999999997       247899  899999


Q ss_pred             ccCCc----------------ccc--cccccCChhhHHHHHhhcCCCCCCCCcc---ccccc
Q 019380           76 FSDRG----------------CNL--CMNIFDSPSSLIKHKEACSLSAPVPFKI---SGAID  116 (342)
Q Consensus        76 f~~~~----------------C~~--C~k~F~~~~~L~~H~~~h~~~~~~~~~~---c~~~~  116 (342)
                      |...+                |+.  |+++|...+.|..|+++|++   +.|..   |+...
T Consensus       116 f~~~~~L~~H~~~H~~~~~~~C~~~~C~k~F~~~~~L~~H~~~H~~---~~C~~~~~C~~~f  174 (190)
T 1tf6_A          116 FKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCKKDDSCSFVG  174 (190)
T ss_dssp             CSSHHHHHHHHGGGSSSCSSBCCSSSCCCBCSSHHHHHHHHTSSCS---CCCCSTTTCCCCC
T ss_pred             cCCHHHHHHHHHHhCCCCCccCCCCCCCchhcCHHHHHHHHHHhCC---CcCCCCCcCCCcc
Confidence            99752                988  99999999999999999998   77777   76553

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.52  E-value=1.8e-14  Score=108.39  Aligned_cols=82  Identities=28%  Similarity=0.436  Sum_probs=72.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc---C----CCcccCCCCCcccCCc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---T----GPLSKAHCSGIFSDRG   80 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---~----~~~~C~~C~k~f~~~~   80 (342)
                      ++++++|+|+.|++.|.....|..|+++  |.++++ .|..|++.|.+...|..|+   .    ++|            .
T Consensus         2 s~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~------------~   67 (95)
T 2yt9_A            2 SSGSSGVACEICGKIFRDVYHLNRHKLS--HSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPY------------I   67 (95)
T ss_dssp             CCCCSCEECSSSCCEESSSHHHHHHHHH--SCSSCSEECSSSCCEESCHHHHHHHHHHHCCCCCSSB------------C
T ss_pred             CCCCCCeECCCCCCccCChHHHHHHHHh--cCCCCCCcCCCCCCccCCHHHHHHHHHHhcCCCCCce------------E
Confidence            5789999999999999999999999999  888877 9999999999999999998   2    333            4


Q ss_pred             ccccccccCChhhHHHHHh-hcCCC
Q 019380           81 CNLCMNIFDSPSSLIKHKE-ACSLS  104 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~-~h~~~  104 (342)
                      |+.|++.|..+..|..|++ .|.++
T Consensus        68 C~~C~~~f~~~~~L~~H~~~~H~~~   92 (95)
T 2yt9_A           68 CQSCGKGFSRPDHLNGHIKQVHSGP   92 (95)
T ss_dssp             CSSSCCCBSSHHHHHHHHHHTSCCC
T ss_pred             CCCccchhCCHHHHHHHHHHhcCCC
Confidence            6889999999999999997 56654

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=3e-14  Score=111.25  Aligned_cols=93  Identities=18%  Similarity=0.135  Sum_probs=75.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC--ccccCcccc--CChhhhhhhc---CCCcccCCCCCcccCCcc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP--KCAVCQKLS--KSFESLREHL---TGPLSKAHCSGIFSDRGC   81 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~--~C~~C~~~f--~~~~~l~~H~---~~~~~C~~C~k~f~~~~C   81 (342)
                      .++++||+|+.|++.|..+..|..|++++.|.+.++  .|..|++.|  .....|..|+   .+..++          .|
T Consensus        14 H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~~~C~~C~~~f~f~~~~~l~~H~~~H~~~~~~----------~C   83 (115)
T 2dmi_A           14 FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVL----------KC   83 (115)
T ss_dssp             CCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCCCCCCCCCSCCSSCCCCCCCCCCCSCCCCSSC----------BC
T ss_pred             eCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCCccCCCCCcccccccHHHHHHHhhccCCCcce----------EC
Confidence            468999999999999999999999999733444444  699999999  8999999998   222222          47


Q ss_pred             cccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      +.|++.|...+.|..|++.|+.......+.
T Consensus        84 ~~C~k~f~~~~~L~~H~~~hh~~~~~~~~~  113 (115)
T 2dmi_A           84 MYCGHSFESLQDLSVHMIKTKHYQKVSGPS  113 (115)
T ss_dssp             SSSCCBCSSHHHHHHHHHHTTTTTCSCCCC
T ss_pred             CCCCCccCCHHHHHHHHHHhCCcccCCCCC
Confidence            889999999999999999998776665543

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=99.51  E-value=8.7e-15  Score=108.93  Aligned_cols=81  Identities=21%  Similarity=0.552  Sum_probs=70.0

Q ss_pred             CCCccccc--ccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCccc
Q 019380           11 STARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (342)
Q Consensus        11 ~~~~~~C~--~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~   82 (342)
                      +++||+|+  .|++.|.....|..|+++  |.+.++ .|..|++.|.+...|..|+     .++|.            |+
T Consensus         1 ~~k~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~   66 (90)
T 1a1h_A            1 MERPYACPVESCDRRFSQSGSLTRHIRI--HTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFA------------CD   66 (90)
T ss_dssp             --CCEECCSSSCCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHHHHHHCCCCEE------------CT
T ss_pred             CCCceECCCCCCCCccCCHHHHHHHHHH--hCCCCCccCCCCCcccCCHHHHHHHHHHcCCCCCcc------------CC
Confidence            47899998  699999999999999999  887777 9999999999999999998     33444            68


Q ss_pred             ccccccCChhhHHHHHhhcCCCC
Q 019380           83 LCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        83 ~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|++.|...+.|..|+++|++++
T Consensus        67 ~C~~~f~~~~~l~~H~~~H~~~k   89 (90)
T 1a1h_A           67 ICGRKFARSDERKRHTKIHLRQK   89 (90)
T ss_dssp             TTCCEESSHHHHHHHHGGGGC--
T ss_pred             CCCchhCCHHHHHHHHHHhcccC
Confidence            89999999999999999999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.49  E-value=2.8e-14  Score=110.04  Aligned_cols=90  Identities=20%  Similarity=0.270  Sum_probs=77.1

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhc--CCCcccCCCCCcccCCcccccc
Q 019380            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHL--TGPLSKAHCSGIFSDRGCNLCM   85 (342)
Q Consensus         8 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~--~~~~~C~~C~k~f~~~~C~~C~   85 (342)
                      ..+++++|+|+.|++.|.....|..|+++  |. ..+.|..|++.|.....|..|+  .+..+.          .|+.|+
T Consensus        10 ~h~~~~~~~C~~C~~~f~~~~~l~~H~~~--H~-~~~~C~~C~~~f~~~~~l~~H~~H~~~~~~----------~C~~C~   76 (107)
T 1wjp_A           10 PVENKEVYQCRLCNAKLSSLLEQGSHERL--CR-NAAVCPYCSLRFFSPELKQEHESKCEYKKL----------TCLECM   76 (107)
T ss_dssp             CCCCCCCCBCTTTCCBCSSHHHHHHHHHH--HH-HSBCCTTTCCCBSSHHHHHHHHHHCSTGGG----------EEGGGT
T ss_pred             ccCCCcCeECCCCCCccCCHHHHHHHHHH--CC-CCccCCCCCCccCCHHHHHHHHHcCCCCCc----------cCcccc
Confidence            34688999999999999999999999999  73 3349999999999999999998  222222          478999


Q ss_pred             cccCChhhHHHHHh-hcCCCCCCCCc
Q 019380           86 NIFDSPSSLIKHKE-ACSLSAPVPFK  110 (342)
Q Consensus        86 k~F~~~~~L~~H~~-~h~~~~~~~~~  110 (342)
                      +.|.....|..|++ .|.+++++.++
T Consensus        77 ~~f~~~~~L~~H~~~~H~~~~~~~~~  102 (107)
T 1wjp_A           77 RTFKSSFSIWRHQVEVHNQNNMAPTS  102 (107)
T ss_dssp             EECSSHHHHHHHHHHTSCCCCCCCCC
T ss_pred             chhCCHHHHHHHHHHHcCCCCCCCCC
Confidence            99999999999997 99999998775

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=99.46  E-value=3.3e-14  Score=103.74  Aligned_cols=76  Identities=32%  Similarity=0.605  Sum_probs=68.1

Q ss_pred             cccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCcccccccc
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNI   87 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~k~   87 (342)
                      ||+|+.|++.|.....|..|+++  |.+.++ .|..|++.|.+...|..|+     .++|.            |+.|++.
T Consensus         1 ~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~   66 (82)
T 2kmk_A            1 SFDCKICGKSFKRSSTLSTHLLI--HSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHK------------CQVCGKA   66 (82)
T ss_dssp             CEECSSSCCEESSHHHHHHHHHH--HHTCCCEECSSSCCEESSHHHHHHHHHHHHTCCCEE------------CTTTSCE
T ss_pred             CccCCCCcccccCchhHHHHHHH--cCCCCCeeCCcCChhhCCHHHHHHHHHHhcCCCCCc------------CCCcchh
Confidence            69999999999999999999999  877777 9999999999999999998     33444            6889999


Q ss_pred             cCChhhHHHHHhhcCC
Q 019380           88 FDSPSSLIKHKEACSL  103 (342)
Q Consensus        88 F~~~~~L~~H~~~h~~  103 (342)
                      |...+.|..|+++|+|
T Consensus        67 f~~~~~l~~H~~~H~g   82 (82)
T 2kmk_A           67 FSQSSNLITHSRKHTG   82 (82)
T ss_dssp             ESSHHHHHHHHHHHC-
T ss_pred             hCChHHHHHHHHhhCC
Confidence            9999999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.44  E-value=1.4e-13  Score=113.09  Aligned_cols=93  Identities=33%  Similarity=0.617  Sum_probs=82.2

Q ss_pred             CCCCCccccccc-----ccccCCHHHHHHHHhhhccCCCCC-cccc--CccccCChhhhhhhc-----CCCcccCC--CC
Q 019380            9 KRSTARHKCVAC-----YKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL-----TGPLSKAH--CS   73 (342)
Q Consensus         9 ~~~~~~~~C~~C-----~k~f~~~~~L~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~--C~   73 (342)
                      .+++++|.|+.|     ++.|..+..|..|+++  |++.++ .|..  |++.|.+...|..|+     .++|.|+.  |+
T Consensus        29 h~~~~~~~C~~c~C~~c~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~  106 (155)
T 2gli_A           29 HGERKEFVCHWGGCSRELRPFKAQYMLVVHMRR--HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCS  106 (155)
T ss_dssp             SSCSSCCCCCBTTCTTTTCCCSSHHHHHHHTHH--HHCCCCCCCCSTTCCCCCSSHHHHHHHHHHTTTCCCEECCSTTCC
T ss_pred             CCCCcceeCCCCCccchhhhhhhHHHHHHHHHh--cCCCCCccCCCCCCCCcccCHHHHHHHHHHcCCCCCeeCCCCCCC
Confidence            357889998753     4999999999999999  877776 9985  999999999999998     56899998  99


Q ss_pred             CcccCCc-----------------ccc--cccccCChhhHHHHHhhcCC
Q 019380           74 GIFSDRG-----------------CNL--CMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        74 k~f~~~~-----------------C~~--C~k~F~~~~~L~~H~~~h~~  103 (342)
                      +.|...+                 |+.  |+++|...+.|..|+++|+|
T Consensus       107 ~~f~~~~~L~~H~~~~H~~~~~~~C~~~~C~~~f~~~~~L~~H~~~hhg  155 (155)
T 2gli_A          107 KAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG  155 (155)
T ss_dssp             CEESSSSTTHHHHHHTTCSCCCEECCSTTTCCEESSHHHHHHHHHHSCC
T ss_pred             CccCCHHHHHHHHHHhcCCCCCeeCCCCCCccccCCHHHHHHHHHhhcC
Confidence            9998753                 988  99999999999999999986

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.43  E-value=9.2e-14  Score=107.55  Aligned_cols=81  Identities=31%  Similarity=0.545  Sum_probs=72.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~   82 (342)
                      .+++++|+| .|++.|.....|..|++.  |.+.++ .|..|++.|.+...|..|+     .++|            .|+
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~------------~C~   69 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSM--HLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPY------------ECN   69 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHH--HSCCCSEECTTTSCEESSSHHHHHHHTTTCCCCCE------------ECS
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHH--cCCCcCccCCCCCcccCCHHHHHHHHHHcCCCCCe------------eCC
Confidence            468999999 999999999999999999  888777 9999999999999999998     2233            468


Q ss_pred             ccccccCChhhHHHHHhhcCCC
Q 019380           83 LCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        83 ~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      .|++.|.....|..|++.|+..
T Consensus        70 ~C~~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           70 ICAKRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             SSCCEESCHHHHHHHHHHHHHH
T ss_pred             CCcchhcCHHHHHHHHHHcccc
Confidence            8999999999999999998743

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.37  E-value=1.7e-13  Score=94.21  Aligned_cols=59  Identities=22%  Similarity=0.361  Sum_probs=48.5

Q ss_pred             CCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccccccCC
Q 019380           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDS   90 (342)
Q Consensus        11 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~F~~   90 (342)
                      .||||+|++|++.|..++.|..|+++  |++++|                      |            .|++||++|.+
T Consensus         1 SEKpy~C~~C~k~F~~~~~L~~H~~~--Ht~ekp----------------------~------------~C~~C~k~F~~   44 (60)
T 4gzn_C            1 SERPFFCNFCGKTYRDASGLSRHRRA--HLGYRP----------------------R------------SCPECGKCFRD   44 (60)
T ss_dssp             CCCCEECTTTCCEESSHHHHHHHHHH--HHTCCC----------------------E------------ECTTTCCEESS
T ss_pred             CCCCccCCCCCCEeCCHHHHHHHHHH--hCCCcC----------------------e------------ECCCCCCCcCC
Confidence            37999999999999999999999999  887765                      2            24667777788


Q ss_pred             hhhHHHHHhhcCCCC
Q 019380           91 PSSLIKHKEACSLSA  105 (342)
Q Consensus        91 ~~~L~~H~~~h~~~~  105 (342)
                      .++|.+|+++|.|++
T Consensus        45 ~~~L~~H~~~Htgep   59 (60)
T 4gzn_C           45 QSEVNRHLKVHQNKP   59 (60)
T ss_dssp             HHHHHHHGGGGSCC-
T ss_pred             HHHHHHHhCccCCCC
Confidence            888888888888764

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=99.37  E-value=8.5e-13  Score=99.99  Aligned_cols=86  Identities=24%  Similarity=0.446  Sum_probs=72.9

Q ss_pred             CCCCCCCCcccccc--cccccCCHHHHHHHHhhhccCCCCC-ccc--cCccccCChhhhhhhc---CCCcccCCCCCccc
Q 019380            6 ELPKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL---TGPLSKAHCSGIFS   77 (342)
Q Consensus         6 ~~~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~   77 (342)
                      .++...+++|.|+.  |++.|.....|..|+++  |.+.++ .|.  .|++.|.....|..|+   .+..+.        
T Consensus         7 ~~~~~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~--------   76 (100)
T 2ebt_A            7 GPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRT--HTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPF--------   76 (100)
T ss_dssp             CCCCCSCCCEECCSSSCCCEESCHHHHHHHHHH--HSCCCCEECCSSSCCCEESSHHHHHHHHHHHTSCCSC--------
T ss_pred             CcccccCcceEcCCCCCCCcccCHHHHHHHHHH--hCCCCCeeCCCCCCCCccCCHHHHHHHHHHhCCCCCe--------
Confidence            44556788999996  99999999999999999  888777 996  6999999999999998   232222        


Q ss_pred             CCcccccccccCChhhHHHHHhhcCC
Q 019380           78 DRGCNLCMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        78 ~~~C~~C~k~F~~~~~L~~H~~~h~~  103 (342)
                        .|+.|++.|.....|..|+++|.+
T Consensus        77 --~C~~C~~~f~~~~~l~~H~~~H~~  100 (100)
T 2ebt_A           77 --QCGVCNRSFSRSDHLALHMKRHQN  100 (100)
T ss_dssp             --BCSSSCCBCSSHHHHHHHHHHHCC
T ss_pred             --ECCCCcCccCCHHHHHHHHHHhCC
Confidence              468899999999999999999874

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=99.35  E-value=5.4e-14  Score=104.48  Aligned_cols=78  Identities=19%  Similarity=0.410  Sum_probs=69.9

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc----CCCcccCCCCCcccCCccccccc
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL----TGPLSKAHCSGIFSDRGCNLCMN   86 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~----~~~~~C~~C~k~f~~~~C~~C~k   86 (342)
                      ++||+|+.|++.|..+..|..|+++  |+++++ .|..|++.|.....|..|+    ..++            .|+.|++
T Consensus         1 ek~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C~k~f~~~~~L~~H~~~h~~~~~------------~c~~C~~   66 (88)
T 1llm_C            1 MKPFQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDICGRKFARSDERKRHRDIQHILPI------------LEDKVEE   66 (88)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH--HHCCCCEECTTTCCEESSHHHHHHHHHHHTHHHH------------HHHHHHH
T ss_pred             CCCCcCCCCCCccCCHHHHHHHHHH--cCCCCCccCCCCCCccCCHHHHHHHHHHhCCCcc------------hHHHHHH
Confidence            6899999999999999999999999  888887 9999999999999999998    2223            4789999


Q ss_pred             ccCChhhHHHHHhhcCC
Q 019380           87 IFDSPSSLIKHKEACSL  103 (342)
Q Consensus        87 ~F~~~~~L~~H~~~h~~  103 (342)
                      .|.....|..|++.+++
T Consensus        67 ~f~~~~~L~~H~~~~h~   83 (88)
T 1llm_C           67 LLSKNYHLENEVARLKK   83 (88)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhhHHHHHHHHH
Confidence            99999999999987764

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=99.29  E-value=2.8e-12  Score=94.89  Aligned_cols=77  Identities=27%  Similarity=0.552  Sum_probs=68.0

Q ss_pred             CCCcccccc--cccccCCHHHHHHHHhhhccCCCCC-ccc--cCccccCChhhhhhhc-----CCCcccCCCCCcccCCc
Q 019380           11 STARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRG   80 (342)
Q Consensus        11 ~~~~~~C~~--C~k~f~~~~~L~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~   80 (342)
                      .+++|.|+.  |++.|..+..|..|+++  |.+.++ .|.  .|++.|.+...|..|+     .++|            .
T Consensus         2 ~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~------------~   67 (89)
T 2wbs_A            2 RTATHTCDYAGCGKTYTKSSHLKAHLRT--HTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPF------------Q   67 (89)
T ss_dssp             -CCCEECCSTTTCCEESSHHHHHHHHTT--SCSSCCEECCSTTTCCEESSHHHHHHHHHHHHCCCCE------------E
T ss_pred             CCCCeeCCCCCCCCcCCCHHHHHHHHHh--cCCCCCcCCCCCCCCCccCCHHHHHHHHHHcCCCCCc------------c
Confidence            457899999  99999999999999999  888887 997  6999999999999998     3344            4


Q ss_pred             ccccccccCChhhHHHHHhhc
Q 019380           81 CNLCMNIFDSPSSLIKHKEAC  101 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h  101 (342)
                      |+.|++.|...+.|..|+++|
T Consensus        68 C~~C~~~f~~~~~l~~H~~~H   88 (89)
T 2wbs_A           68 CQKCDRAFSRSDHLALHMKRH   88 (89)
T ss_dssp             CSSSSCEESSHHHHHHHGGGG
T ss_pred             CCCCCcccCCHHHHHHHHHhh
Confidence            688999999999999999987

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.28  E-value=2.9e-12  Score=92.72  Aligned_cols=53  Identities=25%  Similarity=0.440  Sum_probs=38.2

Q ss_pred             CCCCCcccccc--cccccCCHHHHHHHHh-hhccCCCCC-cccc--CccccCChhhhhhhc
Q 019380            9 KRSTARHKCVA--CYKQFKRKDHLIEHMK-ISYHSVHQP-KCAV--CQKLSKSFESLREHL   63 (342)
Q Consensus         9 ~~~~~~~~C~~--C~k~f~~~~~L~~H~~-~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~   63 (342)
                      ++++++|.|+.  |++.|.++..|..|++ .  |+++++ .|..  |++.|.+...|..|+
T Consensus         2 s~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~--H~~~~~~~C~~~~C~k~f~~~~~L~~H~   60 (79)
T 2dlk_A            2 SSGSSGMPCDFPGCGRIFSNRQYLNHHKKYQ--HIHQKSFSCPEPACGKSFNFKKHLKEHM   60 (79)
T ss_dssp             CSCCSSEECSSTTTCCEESSHHHHHHHHHHG--GGSCCCEECSCTTTCCEESSHHHHHHHH
T ss_pred             CCCCCCccCCCCCCcCccCCHHHHHHHHHHH--hCCCCCeECCCCCCcCccCCHHHHHHHH
Confidence            57899999986  9999999999999998 7  776655 5544  444444444444443

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=99.28  E-value=1.9e-12  Score=94.84  Aligned_cols=74  Identities=27%  Similarity=0.501  Sum_probs=66.6

Q ss_pred             cccc--cccccccCCHHHHHHHHhhhccCCCCC-cccc--CccccCChhhhhhhc---CCCcccCCCCCcccCCcccc--
Q 019380           14 RHKC--VACYKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNL--   83 (342)
Q Consensus        14 ~~~C--~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~~C~~--   83 (342)
                      ||+|  +.|++.|..+..|..|+++  |+++++ .|..  |++.|.+...|..|+   .+ |.            |+.  
T Consensus         1 p~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~-~~------------C~~~~   65 (85)
T 2j7j_A            1 MYVCHFENCGKAFKKHNQLKVHQFS--HTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG-YP------------CKKDD   65 (85)
T ss_dssp             CEECCSTTCCCEESSHHHHHHHHHH--HHTTCCEECCSTTCCCEESSHHHHHHHHHHHHS-EE------------CCSCS
T ss_pred             CccCCCCCCCcccCCHHHHHHHHHH--hCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCC-CC------------CCCCC
Confidence            6999  9999999999999999999  888887 9988  999999999999998   33 54            456  


Q ss_pred             -cccccCChhhHHHHHhhcC
Q 019380           84 -CMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        84 -C~k~F~~~~~L~~H~~~h~  102 (342)
                       |++.|...+.|..|+++|+
T Consensus        66 ~C~~~f~~~~~l~~H~~~hh   85 (85)
T 2j7j_A           66 SCSFVGKTWTLYLKHVAECH   85 (85)
T ss_dssp             SCCCEESSHHHHHHHHHHCC
T ss_pred             CCCCccCCHHHHHHHHHhcC
Confidence             9999999999999999875

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.22  E-value=2.2e-11  Score=87.79  Aligned_cols=67  Identities=30%  Similarity=0.492  Sum_probs=55.6

Q ss_pred             CCCCCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCccccccc
Q 019380            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMN   86 (342)
Q Consensus         7 ~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k   86 (342)
                      -...++++|+|+.|++.|.....|..|+++  |+++++                      |            .|+.|++
T Consensus        11 ~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~----------------------~------------~C~~C~~   54 (77)
T 2cot_A           11 WQQRERRRYKCDECGKSFSHSSDLSKHRRT--HTGEKP----------------------Y------------KCDECGK   54 (77)
T ss_dssp             SCCCCSCSSBCSSSCCBCSCHHHHHHHHTT--TCCSCS----------------------E------------ECSSSCC
T ss_pred             CcCCCCCCEECCCCCcccCCHHHHHHHHHH--cCCCcC----------------------e------------eCCCCCC
Confidence            345678999999999999999999999998  765433                      2            3567888


Q ss_pred             ccCChhhHHHHHhhcCCCCCCCC
Q 019380           87 IFDSPSSLIKHKEACSLSAPVPF  109 (342)
Q Consensus        87 ~F~~~~~L~~H~~~h~~~~~~~~  109 (342)
                      .|.....|..|+++|++++|+.|
T Consensus        55 ~f~~~~~L~~H~~~H~~~~p~~C   77 (77)
T 2cot_A           55 AFIQRSHLIGHHRVHTGSGPSSG   77 (77)
T ss_dssp             EESSHHHHHHHGGGSCCCCCCCC
T ss_pred             ccCCHHHHHHHHHHhCCCCCCCC
Confidence            88888899999999999998876

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=99.21  E-value=9e-12  Score=97.98  Aligned_cols=67  Identities=19%  Similarity=0.285  Sum_probs=56.2

Q ss_pred             CCCCC-ccccCccccCChhhhhhhc---C--CCcccCCCCCcccCCcccccccccCChhhHHHHHhh---cCCCCCCCCc
Q 019380           40 SVHQP-KCAVCQKLSKSFESLREHL---T--GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEA---CSLSAPVPFK  110 (342)
Q Consensus        40 ~~~~~-~C~~C~~~f~~~~~l~~H~---~--~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~---h~~~~~~~~~  110 (342)
                      ++.++ .|..|++.|.+...|..|+   .  ++|            .|+.|++.|.....|..|++.   +.+++++.|+
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~------------~C~~C~~~f~~~~~l~~H~~~~~~~~~~~~~~C~   70 (124)
T 2dlq_A            3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPF------------ECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCS   70 (124)
T ss_dssp             CCCSSCCCTTTCCCCSSHHHHHHHHHHHSSCCSC------------BCTTTCCBCSSHHHHHHHHHHCCCCSCCCCEECS
T ss_pred             CCCCCCCCCCCCCcCCCHHHHHHHHHhCCCCCCe------------ECCCCCchhcCHHHHHHHHhhhhcCCCCCCeECC
Confidence            45555 9999999999999999998   2  344            468899999999999999985   6788999999


Q ss_pred             cccccccc
Q 019380          111 ISGAIDEK  118 (342)
Q Consensus       111 ~c~~~~~~  118 (342)
                      .|++....
T Consensus        71 ~C~~~f~~   78 (124)
T 2dlq_A           71 VCQETFRR   78 (124)
T ss_dssp             SSCCEESS
T ss_pred             CCCCccCC
Confidence            99987653

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.21  E-value=1.6e-11  Score=87.82  Aligned_cols=66  Identities=29%  Similarity=0.533  Sum_probs=53.2

Q ss_pred             CCCCCCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccc
Q 019380            6 ELPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCM   85 (342)
Q Consensus         6 ~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~   85 (342)
                      ....+++++|+|+.|++.|..+..|..|+++  |+++++                      |            .|+.|+
T Consensus         9 ~~~~~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~~~~----------------------~------------~C~~C~   52 (74)
T 2lce_A            9 SHMTHSDKPYKCDRCQASFRYKGNLASHKTV--HTGEKP----------------------Y------------RCNICG   52 (74)
T ss_dssp             --CCCCCCSBCCTTSSCCBSCHHHHHHHHHH--HCCCCS----------------------E------------ECTTTC
T ss_pred             ccccCCCCCeECCCCCceeCCHHHHHHHHHH--cCCCCC----------------------E------------ECCCCC
Confidence            3455689999999999999999999999999  765433                      2            356778


Q ss_pred             cccCChhhHHHHHhhcCCCCCC
Q 019380           86 NIFDSPSSLIKHKEACSLSAPV  107 (342)
Q Consensus        86 k~F~~~~~L~~H~~~h~~~~~~  107 (342)
                      +.|...+.|.+|+++|++++||
T Consensus        53 k~f~~~~~L~~H~~~H~~~kp~   74 (74)
T 2lce_A           53 AQFNRPANLKTHTRIHSGEKPY   74 (74)
T ss_dssp             CEESCHHHHHHHHHHHCCSCCC
T ss_pred             chhCCHHHHHHHHHhcCCCCCC
Confidence            8888888899999999888774

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=99.17  E-value=8.5e-12  Score=100.22  Aligned_cols=74  Identities=16%  Similarity=0.323  Sum_probs=61.0

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCcccc
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNL   83 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~   83 (342)
                      ++++||+|+.|++.|.++..|..|+++  |+++++ .|..|++.|.+.+.|..|+     ..++.|..|   |   .|..
T Consensus        46 ~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C~k~F~~~~~L~~H~~~hh~~~p~~~~k~---~---~C~~  117 (133)
T 2lt7_A           46 SWEKKYPCRYCEKVFPLAEYRTKHEIH--HTGERRYQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKL---Y---RLHP  117 (133)
T ss_dssp             HCCSCEECSSSSCEESSHHHHHHHHHH--HHTCCCEEESSSCCEESSHHHHHHHHHHHTCCCTTSSSCC---E---EECC
T ss_pred             CCCCCeeCCccCeecccccchhhhccc--cCCCccccCCCCCCCcCCHHHHHHHhHHhcCCCCCCCCCC---e---ecCC
Confidence            478999999999999999999999999  999888 9999999999999999998     233333222   1   4788


Q ss_pred             cccccCCh
Q 019380           84 CMNIFDSP   91 (342)
Q Consensus        84 C~k~F~~~   91 (342)
                      |++.|...
T Consensus       118 C~k~~~~~  125 (133)
T 2lt7_A          118 CRSLQIRQ  125 (133)
T ss_dssp             CCSSCCCC
T ss_pred             CCchhhhc
Confidence            88877643

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.11  E-value=3.9e-11  Score=91.63  Aligned_cols=76  Identities=13%  Similarity=0.133  Sum_probs=59.8

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHh-hhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNI   87 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~-~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~   87 (342)
                      .++++||+|+.|++.|..+..|..|++ +  |++...                   .++|            .|+.||++
T Consensus        13 ~~gekpy~C~~Cgk~F~~~~~L~~H~r~~--H~~~~~-------------------ekpf------------~C~~Cgk~   59 (102)
T 2ghf_A           13 KKVEGGYECKYCTFQTPDLNMFTFHVDSE--HPNVVL-------------------NSSY------------VCVECNFL   59 (102)
T ss_dssp             CCCCSSEECSSCSCEESCHHHHHHHHHHH--CSSCCC-------------------SCCE------------EETTTTEE
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHhh--CCCCCC-------------------CCCc------------CCCCCCcc
Confidence            459999999999999999999999997 6  743100                   1233            35778888


Q ss_pred             cCChhhHHHH-HhhcCCCCCCCCcccccccc
Q 019380           88 FDSPSSLIKH-KEACSLSAPVPFKISGAIDE  117 (342)
Q Consensus        88 F~~~~~L~~H-~~~h~~~~~~~~~~c~~~~~  117 (342)
                      |..++.|..| +++|.+++||.|.++.....
T Consensus        60 F~~~~~L~~H~~r~Htgekpy~C~~~~~~~~   90 (102)
T 2ghf_A           60 TKRYDALSEHNLKYHPGEENFKLTMVKRNNQ   90 (102)
T ss_dssp             ESSTHHHHTHHHHTSTTCCCEEEEECCCSSC
T ss_pred             cCCHHHHHHHHHHhcCCCCCeeCCcccCCCc
Confidence            8888999999 78999999999987666643

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=99.10  E-value=3.1e-11  Score=82.82  Aligned_cols=38  Identities=24%  Similarity=0.331  Sum_probs=35.1

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDE  117 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~~  117 (342)
                      .|++||++|...+.|..|+++|.+++|+.|++|+++..
T Consensus         6 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~C~k~F~   43 (60)
T 4gzn_C            6 FCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFR   43 (60)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHHTCCCEECTTTCCEES
T ss_pred             cCCCCCCEeCCHHHHHHHHHHhCCCcCeECCCCCCCcC
Confidence            36889999999999999999999999999999998765

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=99.09  E-value=5e-11  Score=93.02  Aligned_cols=68  Identities=22%  Similarity=0.307  Sum_probs=57.6

Q ss_pred             CCCCC-cccc--CccccCChhhhhhhc-----CCCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           40 SVHQP-KCAV--CQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        40 ~~~~~-~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      +++++ .|..  |++.|.+...|..|+     .++|.|          .++.|++.|.....|..|++.|++++++.|+.
T Consensus         2 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C----------~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~   71 (119)
T 2jp9_A            2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQC----------DFKDCERRFSRSDQLKRHQRRHTGVKPFQCKT   71 (119)
T ss_dssp             CSSCCBCCCSTTSCCCBSCHHHHHHHHHHHHTTCCEEC----------CSTTCCCEESSHHHHHHHHHHHHCCCCEECTT
T ss_pred             CCCeeeeCCCCCCcchhCCHHHHHHHHHhhCCCCCccC----------CCCCCcCccCCHHHHHHHHHHcCCCCCccCCc
Confidence            45555 9987  999999999999998     345655          12379999999999999999999999999999


Q ss_pred             cccccc
Q 019380          112 SGAIDE  117 (342)
Q Consensus       112 c~~~~~  117 (342)
                      |++...
T Consensus        72 C~~~f~   77 (119)
T 2jp9_A           72 CQRKFS   77 (119)
T ss_dssp             TCCEES
T ss_pred             cCchhC
Confidence            998765

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.06  E-value=3.7e-11  Score=91.01  Aligned_cols=75  Identities=16%  Similarity=0.257  Sum_probs=55.8

Q ss_pred             cCCHHHHHHHHhhhccCCCCC-ccccCccccC-Chhhhhhhc---CC-CcccCCCCCcccCCcccccccccCChhhHHHH
Q 019380           24 FKRKDHLIEHMKISYHSVHQP-KCAVCQKLSK-SFESLREHL---TG-PLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKH   97 (342)
Q Consensus        24 f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~-~~~~l~~H~---~~-~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H   97 (342)
                      +.....+..|+++  |++.++ .|..|++.|. ....|..|+   .+ ..++          .|+.|++.|..+..|.+|
T Consensus         6 ~~~~~~~~~h~~~--h~~~~~~~C~~C~k~f~~~~~~L~~H~~~h~~~~~~~----------~C~~C~k~F~~~~~L~~H   73 (98)
T 2gqj_A            6 SGPGGPEEQWQRA--IHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDAL----------KCQHCRKQFKSKAGLNYH   73 (98)
T ss_dssp             CCCCCSCSHHHHT--TTTTSCCCCTTTCCCCSSCSHHHHHHHHHHHHHHHHH----------SCSSSCCCCSCHHHHHHH
T ss_pred             CCCCCcHHHHHHH--hccCCCcCCCCCCCChhhhHHHHHHHHHHHcCCCCCE----------ECCCCCCccCCHHHHHHH
Confidence            4444556677777  777666 7888888888 778888776   22 2222          468899999999999999


Q ss_pred             HhhcCCCCCCCCc
Q 019380           98 KEACSLSAPVPFK  110 (342)
Q Consensus        98 ~~~h~~~~~~~~~  110 (342)
                      +++|++++|....
T Consensus        74 ~~~h~~~kp~~~~   86 (98)
T 2gqj_A           74 TMAEHSAKPSDAE   86 (98)
T ss_dssp             HHHHSCSCSSCCC
T ss_pred             HHHHcCCCCCCCC
Confidence            9999999986544

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.06  E-value=1.3e-10  Score=81.98  Aligned_cols=65  Identities=29%  Similarity=0.438  Sum_probs=52.1

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccccc
Q 019380            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNI   87 (342)
Q Consensus         8 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~   87 (342)
                      +.+++++|+|+.|++.|..+..|..|+++  |+++++                      |            .|+.|++.
T Consensus         3 s~~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~----------------------~------------~C~~C~~~   46 (70)
T 1x5w_A            3 SGSSGHPEKCSECSYSCSSKAALRIHERI--HCTDRP----------------------F------------KCNYCSFD   46 (70)
T ss_dssp             SCCCCCSEECSSSSCEESSHHHHHHHHGG--GCCSCS----------------------E------------ECSSSSCE
T ss_pred             CCCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCC----------------------E------------eCCCCCCc
Confidence            45789999999999999999999999999  775543                      2            24667777


Q ss_pred             cCChhhHHHHHhhcCCCCCCC
Q 019380           88 FDSPSSLIKHKEACSLSAPVP  108 (342)
Q Consensus        88 F~~~~~L~~H~~~h~~~~~~~  108 (342)
                      |.....|..|++.|++++|..
T Consensus        47 f~~~~~L~~H~~~h~~~~p~p   67 (70)
T 1x5w_A           47 TKQPSNLSKHMKKFHGDMSGP   67 (70)
T ss_dssp             ESSHHHHHHHHHHHHSSSCCS
T ss_pred             cCCHHHHHHHHHHHhCCCCCC
Confidence            777788888888888877754

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.05  E-value=9.9e-11  Score=86.25  Aligned_cols=52  Identities=25%  Similarity=0.409  Sum_probs=39.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhh
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH   62 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H   62 (342)
                      ++.+++|.|++|++.|.++..|.+|+++  |++++| .|..|++.|.+...|.+|
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~--H~~~k~~~C~~C~k~F~~~~~L~~H   75 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRL--LHAAQVFPCKYCPATFYSSPGLTRH   75 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHT--TSCSSSEECTTSSCEESSHHHHHHH
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhh--ccCCCccCCCCCCCEeCCHHHHHHh
Confidence            4567889999999999999999999999  887765 555555554444444444

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.05  E-value=5.9e-11  Score=87.05  Aligned_cols=74  Identities=22%  Similarity=0.343  Sum_probs=55.6

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccccccC
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFD   89 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~F~   89 (342)
                      ++++||+|+.|++.|.....|..|++.  |......                  .++|            .|+.|++.|.
T Consensus        11 ~~~k~~~C~~C~~~f~~~~~l~~H~~~--~~~~~~~------------------~~~~------------~C~~C~~~f~   58 (86)
T 1x6h_A           11 TGEKPYACSHCDKTFRQKQLLDMHFKR--YHDPNFV------------------PAAF------------VCSKCGKTFT   58 (86)
T ss_dssp             CCCCCEECSSSSCEESSHHHHHHHHHH--TTCSSCC------------------CCCE------------ECSSSCCEES
T ss_pred             cCCCCCcCCCCCCccCCHHHHHHHHHH--hcCCcCC------------------Ccce------------ECCCCCChhC
Confidence            567888888888888888888888876  3322100                  1233            3678888899


Q ss_pred             ChhhHHHHHhhcCCCCCCCCcccccc
Q 019380           90 SPSSLIKHKEACSLSAPVPFKISGAI  115 (342)
Q Consensus        90 ~~~~L~~H~~~h~~~~~~~~~~c~~~  115 (342)
                      ....|..|+++|++++++.|..|+..
T Consensus        59 ~~~~L~~H~~~h~~~~~~~~~~~~~~   84 (86)
T 1x6h_A           59 RRNTMARHADNCAGPDGVEGENSGPS   84 (86)
T ss_dssp             CHHHHHHHHHHCCCCCSCCCCCCCCC
T ss_pred             CHHHHHHHHHHccCCCCcccCCCCCC
Confidence            99999999999999999999887654

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=99.04  E-value=2.2e-10  Score=83.91  Aligned_cols=40  Identities=20%  Similarity=0.277  Sum_probs=35.9

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCcccc
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLS   53 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f   53 (342)
                      +++|+|+.|++.|..+..|..|+++  |.++++ .|..|+..|
T Consensus        45 ~~~~~C~~C~~~f~~~~~L~~H~~~--h~~~~~~~~~~~~~~~   85 (86)
T 1x6h_A           45 PAAFVCSKCGKTFTRRNTMARHADN--CAGPDGVEGENSGPSS   85 (86)
T ss_dssp             CCCEECSSSCCEESCHHHHHHHHHH--CCCCCSCCCCCCCCCC
T ss_pred             CcceECCCCCChhCCHHHHHHHHHH--ccCCCCcccCCCCCCC
Confidence            4799999999999999999999999  888777 899998765

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=99.04  E-value=7.4e-11  Score=79.57  Aligned_cols=50  Identities=30%  Similarity=0.573  Sum_probs=33.9

Q ss_pred             CCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhh
Q 019380           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH   62 (342)
Q Consensus        11 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H   62 (342)
                      +++||+|+.|++.|..+..|..|+++  |+++++ .|..|++.|.....|..|
T Consensus         1 g~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H   51 (57)
T 3uk3_C            1 GSSSRECSYCGKFFRSNYYLNIHLRT--HTGEKPYKCEFCEYAAAQKTSLRYH   51 (57)
T ss_dssp             ----CBCTTTCCBCSCHHHHHHHHHH--HHCCCCEECSSSSCEESSHHHHHHH
T ss_pred             CCCCccCCCCcchhCChHHHHHHHHH--cCCCCCcCCCCCcchhCCHHHHHHH
Confidence            47899999999999999999999999  776655 554444444444444444

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.97  E-value=3e-10  Score=80.59  Aligned_cols=63  Identities=27%  Similarity=0.527  Sum_probs=49.2

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccccc
Q 019380            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNI   87 (342)
Q Consensus         8 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~   87 (342)
                      ..++++||+|+.|++.|..+..|..|+++  |+++++                      |            .|+.|++.
T Consensus         8 ~H~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~~~----------------------~------------~C~~C~~~   51 (72)
T 1x6e_A            8 IHSGEKPYGCVECGKAFSRSSILVQHQRV--HTGEKP----------------------Y------------KCLECGKA   51 (72)
T ss_dssp             TTTTCCCEECSSSCCEESSHHHHHHHHHG--GGCSCC----------------------E------------ECSSSCCE
T ss_pred             ccCCCCCccCCCCCCccCCHHHHHHHHHh--cCCCCC----------------------e------------ECCCCCcc
Confidence            35688999999999999999999999999  765543                      2            24667777


Q ss_pred             cCChhhHHHHHhhcCCCCC
Q 019380           88 FDSPSSLIKHKEACSLSAP  106 (342)
Q Consensus        88 F~~~~~L~~H~~~h~~~~~  106 (342)
                      |.....|.+|+++|+++.+
T Consensus        52 f~~~~~L~~H~~~H~~~~~   70 (72)
T 1x6e_A           52 FSQNSGLINHQRIHTSGPS   70 (72)
T ss_dssp             ESSHHHHHHHHHHHHSSSS
T ss_pred             cCCHHHHHHHHHhcCCCCC
Confidence            7777788888888776543

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.96  E-value=7.8e-11  Score=93.60  Aligned_cols=80  Identities=18%  Similarity=0.209  Sum_probs=63.3

Q ss_pred             CCCcccccccccccC------CHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc---CCCcccCCCCCcccCCc
Q 019380           11 STARHKCVACYKQFK------RKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRG   80 (342)
Q Consensus        11 ~~~~~~C~~C~k~f~------~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~~   80 (342)
                      .++++.|+.|++.|.      .+..|..|+ .  |+++++ .|..|++.|.....|..|+   .++|            .
T Consensus        38 ~~~~~~c~~~~~~~~~~~~~~~~~~l~~h~-~--h~~~~~~~C~~C~k~f~~~~~l~~H~~~H~~~~------------~  102 (129)
T 2wbt_A           38 EQKRLIRAIVKTLIHNPQLLDESSYLYRLL-A--SKAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK------------V  102 (129)
T ss_dssp             HHHHHHHHHHHHHHHCGGGTTTHHHHHHHH-H--HHHHCSEECTTTCCEESSHHHHHHHHHHTCCCC------------B
T ss_pred             hhCcccchhhhcccCCCcccCCHHHHHHHH-H--hCCCCCeECCCCCcccCCHhHHHHHHHHCCCCC------------C
Confidence            456677888876665      667777777 4  666666 9999999999999999997   3344            4


Q ss_pred             ccccccccCChhhHHHHHhhcCCCC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      |+.|++.|..++.|..|++.|++.-
T Consensus       103 C~~C~k~f~~~~~l~~H~~~h~~~~  127 (129)
T 2wbt_A          103 CPVCKKEFTSTDSALDHVCKKHNIC  127 (129)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHTTCCC
T ss_pred             CCCCCcccCCHHHHHHHHHHHCCcc
Confidence            6889999999999999999999763

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.95  E-value=1.3e-09  Score=81.42  Aligned_cols=70  Identities=17%  Similarity=0.238  Sum_probs=55.9

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccccccCCh
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSP   91 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~F~~~   91 (342)
                      ..|.|+.|++.|.++..|..|++++ |++.++ .+..|.               .|            .|+.|++.|..+
T Consensus        24 ~~~~C~~C~k~f~~~~~L~~H~~~~-H~~~~~~~~~~c~---------------~~------------~C~~C~k~f~~~   75 (95)
T 2ej4_A           24 LSRPKKSCDRTFSTMHELVTHVTME-HVGGPEQNNHVCY---------------WE------------ECPREGKSFKAK   75 (95)
T ss_dssp             SSSSCCCCCCCCSSHHHHHHHHHHT-TTCCTTCSCCCCC---------------CT------------TCSSTTCCCSSH
T ss_pred             CCCcccccccccCCHHHHHHHHHHh-ccCCCCCCcccee---------------cc------------CCCCCCcccCCH
Confidence            3477999999999999999999863 666554 332221               11            578999999999


Q ss_pred             hhHHHHHhhcCCCCCCCCc
Q 019380           92 SSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        92 ~~L~~H~~~h~~~~~~~~~  110 (342)
                      ..|..|+++|++++|+.|+
T Consensus        76 ~~L~~H~~~H~~~k~~~C~   94 (95)
T 2ej4_A           76 YKLVNHIRVHTGEKSGPSS   94 (95)
T ss_dssp             HHHHHHHHHHHTCCCCSSC
T ss_pred             HHHHHHHHhcCCCCCCCCC
Confidence            9999999999999999986

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=7.4e-12  Score=88.88  Aligned_cols=69  Identities=17%  Similarity=0.122  Sum_probs=58.9

Q ss_pred             HHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCCCCC
Q 019380           28 DHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAP  106 (342)
Q Consensus        28 ~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~  106 (342)
                      ..|..|+++  |+++++ .|..|++.|.....|..  .++|            .|+.|++.|...+.|..|+++|+++++
T Consensus         4 ~~l~~H~~~--h~~~~~~~C~~C~k~f~~~~~l~~--~~~~------------~C~~C~~~f~~~~~l~~H~~~H~~~~~   67 (73)
T 2ctu_A            4 GSSGKRQKI--HLGDRSQKCSKCGIIFIRRSTLSR--RKTP------------MCEKCRKDSCQEAALNKDEGNESGKKT   67 (73)
T ss_dssp             CSCCCCCCC--CCCCSEEECSSSCCEEECCCCCCC--SSSC------------CCHHHHHTCSCCCSSCCCSSCCCCCCC
T ss_pred             hhHHHHHHH--hCCCCCeeCCcccchhCCHHHhCc--CCCC------------CCCCCChhhcCHHHHHHHHHhhcCCCC
Confidence            446778888  888887 99999999999888876  3333            478999999999999999999999999


Q ss_pred             CCCccc
Q 019380          107 VPFKIS  112 (342)
Q Consensus       107 ~~~~~c  112 (342)
                      +.|++|
T Consensus        68 ~~C~~C   73 (73)
T 2ctu_A           68 SGPSSG   73 (73)
T ss_dssp             SSCCCC
T ss_pred             CCCCCC
Confidence            999876

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=2.1e-11  Score=94.85  Aligned_cols=82  Identities=13%  Similarity=0.092  Sum_probs=67.2

Q ss_pred             HHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhcC--CCcccCCCCCcccCCccccccccc--CChhhHHHHHhhcC
Q 019380           28 DHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHLT--GPLSKAHCSGIFSDRGCNLCMNIF--DSPSSLIKHKEACS  102 (342)
Q Consensus        28 ~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~~--~~~~C~~C~k~f~~~~C~~C~k~F--~~~~~L~~H~~~h~  102 (342)
                      ..|..|+++  |+++++ .|..|++.|.+...|..|+.  +...+..+      ..|+.|++.|  .....|..|+++|.
T Consensus         5 ~~l~~H~~~--H~~~~~~~C~~C~k~f~~~~~L~~H~~~~~h~~~~~~------~~C~~C~~~f~f~~~~~l~~H~~~H~   76 (115)
T 2dmi_A            5 SSGKLYGSI--FTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNH------ETDNNNPKRWSKPRKRSLLEMEGKED   76 (115)
T ss_dssp             CCCCCCCCC--CCCCCSEEBSSSSCEESSHHHHHHHHHHTCCCBCSCC------CCCCCCCSCCSSCCCCCCCCCCCSCC
T ss_pred             hhhhhheee--eCCCCCEECCccCchhcCHHHHHHHHHHhCccccCCC------ccCCCCCcccccccHHHHHHHhhccC
Confidence            456788988  888888 99999999999999999983  23333111      1388999998  89999999999999


Q ss_pred             CCCCCCCcccccccc
Q 019380          103 LSAPVPFKISGAIDE  117 (342)
Q Consensus       103 ~~~~~~~~~c~~~~~  117 (342)
                      +++++.|++|++...
T Consensus        77 ~~~~~~C~~C~k~f~   91 (115)
T 2dmi_A           77 AQKVLKCMYCGHSFE   91 (115)
T ss_dssp             CCSSCBCSSSCCBCS
T ss_pred             CCcceECCCCCCccC
Confidence            999999999987654

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.94  E-value=4.5e-10  Score=76.49  Aligned_cols=48  Identities=27%  Similarity=0.652  Sum_probs=35.4

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhh
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH   62 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H   62 (342)
                      +||+|+.|++.|.++..|..|+++  |+++++ .|..|++.|.+...|..|
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H   49 (60)
T 2adr_A            1 RSFVCEVCTRAFARQEHLKRHYRS--HTNEKPYPCGLCNRAFTRRDLLIRH   49 (60)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT--TTSSCSEECTTTCCEESSHHHHHHH
T ss_pred             CcCcCCCCccccCCHHHHHHHHHH--hCCCCCccCCCCCCccCCHHHHHHH
Confidence            589999999999999999999999  876655 454444444444444444

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.93  E-value=3.3e-10  Score=78.82  Aligned_cols=60  Identities=17%  Similarity=0.394  Sum_probs=43.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhcc-CCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYH-SVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNI   87 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H-~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~   87 (342)
                      .++++||+|+.|++.|..+..|..|++.+ | +++++                      |            .|+.|++.
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~l~~H~~~~-H~~~~~~----------------------~------------~C~~C~k~   49 (66)
T 2drp_A            5 KEGEHTYRCKVCSRVYTHISNFCRHYVTS-HKRNVKV----------------------Y------------PCPFCFKE   49 (66)
T ss_dssp             EEETTEEECTTTCCEESSHHHHHHHHHHH-SSSSCCC----------------------E------------ECTTTCCE
T ss_pred             cCCCcceECCCCcchhCCHHHHHHHHHHH-cCCCCcC----------------------e------------ECCCCCCc
Confidence            35789999999999999999999999873 4 34433                      2            24556666


Q ss_pred             cCChhhHHHHHhhcCC
Q 019380           88 FDSPSSLIKHKEACSL  103 (342)
Q Consensus        88 F~~~~~L~~H~~~h~~  103 (342)
                      |..++.|..|++.|++
T Consensus        50 f~~~~~L~~H~~~~H~   65 (66)
T 2drp_A           50 FTRKDNMTAHVKIIHK   65 (66)
T ss_dssp             ESCHHHHHHHHHHHTC
T ss_pred             cCCHHHHHHHHHHHcC
Confidence            6666666666666654

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=98.93  E-value=8.6e-10  Score=86.65  Aligned_cols=85  Identities=24%  Similarity=0.383  Sum_probs=70.6

Q ss_pred             CCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc--CccccCChhhhhhhc-----CCCcccCCCCCcccCCccc
Q 019380           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCN   82 (342)
Q Consensus        11 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~   82 (342)
                      ++++|.|+.|++.|..+..|..|+++  |.++++ .|..  |++.|.+...|..|+     .++|.|          .++
T Consensus        31 ~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~h~~~~~~~C----------~~~   98 (124)
T 1ubd_C           31 GPRVHVCAECGKAFVESSKLKRHQLV--HTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVC----------PFD   98 (124)
T ss_dssp             SCCCEECTTTCCEESSHHHHHHHGGG--TSCCCCEECCSTTCCCEESCHHHHHHHHHHHHCCCCCCC----------CST
T ss_pred             CCCCeECCCCCchhCCHHHHHHHHHH--cCCCCCeeCCCCCCcCccCCHHHHHHHHHHhCCCCceEC----------CCC
Confidence            67899999999999999999999999  888887 9975  999999999999998     345554          114


Q ss_pred             ccccccCChhhHHHHHhhcCCCCCC
Q 019380           83 LCMNIFDSPSSLIKHKEACSLSAPV  107 (342)
Q Consensus        83 ~C~k~F~~~~~L~~H~~~h~~~~~~  107 (342)
                      .|++.|...+.|..|+++|++++++
T Consensus        99 ~C~~~f~~~~~L~~H~~~H~~~k~~  123 (124)
T 1ubd_C           99 GCNKKFAQSTNLKSHILTHAKAKNN  123 (124)
T ss_dssp             TCCCCCSSTTTTHHHHHHHC-----
T ss_pred             CCCCccCCHHHHHHHHHHHcccccC
Confidence            6999999999999999999998875

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.93  E-value=3e-10  Score=81.83  Aligned_cols=67  Identities=19%  Similarity=0.362  Sum_probs=49.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCccccccccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIF   88 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~F   88 (342)
                      .++++||+|+.|++.|..+..|..|+++  |.+..                   ..++|            .|+.|++.|
T Consensus         2 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~~-------------------~~~~~------------~C~~C~k~f   48 (78)
T 2d9h_A            2 SSGSSGLQCEICGFTCRQKASLNWHQRK--HAETV-------------------AALRF------------PCEFCGKRF   48 (78)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHH--HHHHT-------------------TTCCE------------ECTTTCCEE
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHHHH--hhccC-------------------CCccc------------CCCCCCchh
Confidence            4689999999999999999999999999  65410                   01233            357788888


Q ss_pred             CChhhHHHHHh-hcCCCCCCC
Q 019380           89 DSPSSLIKHKE-ACSLSAPVP  108 (342)
Q Consensus        89 ~~~~~L~~H~~-~h~~~~~~~  108 (342)
                      ..++.|..|++ .|.++.+..
T Consensus        49 ~~~~~L~~H~~~~H~~~~~~~   69 (78)
T 2d9h_A           49 EKPDSVAAHRSKSHPALLLAP   69 (78)
T ss_dssp             SSHHHHHHHHHHTSTTTSSCC
T ss_pred             CCHHHHHHHHHHhCCCCCCCc
Confidence            88888999985 455555443

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.92  E-value=6.3e-10  Score=79.00  Aligned_cols=61  Identities=25%  Similarity=0.569  Sum_probs=45.5

Q ss_pred             CCCCCCCCCCCCCccccc--ccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc
Q 019380            1 MDTEAELPKRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (342)
Q Consensus         1 ~~~~~~~~~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (342)
                      |+...+...+++++|+|+  .|++.|..+..|..|+++  |+++++ .|..|++.|...+.|..|+
T Consensus         6 ~~~~~~~~~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   69 (73)
T 1f2i_G            6 MNNLLNYVVPKMRPYACPVESCDRRFSRSDELTRHIRI--HTGQKPFQCRICMRNFSRSDHLTTHI   69 (73)
T ss_dssp             --CTTSCCCCCCCCEECSSTTBCCEESSHHHHHHHHHH--HHCCCCEECTTTCCEESCHHHHHHHH
T ss_pred             ccchhhccCCCCCccCCcCCCCCCccCCHHHHHHHHHh--hCCCCCeECCCCCchhCCHHHHHHHH
Confidence            345566677899999997  699999999999999999  776665 6666666666655555553

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.90  E-value=1.5e-09  Score=72.44  Aligned_cols=48  Identities=33%  Similarity=0.499  Sum_probs=42.6

Q ss_pred             CCCCCCCcccccccccccCCHHHHHHHHh-hhccCCCCC-ccccCccccCCh
Q 019380            7 LPKRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP-KCAVCQKLSKSF   56 (342)
Q Consensus         7 ~~~~~~~~~~C~~C~k~f~~~~~L~~H~~-~~~H~~~~~-~C~~C~~~f~~~   56 (342)
                      .+.++++||+|+.|++.|..+..|..|++ +  |+++++ .|..|++.|.++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~~--H~~~k~~~C~~C~k~F~~~   54 (54)
T 2eps_A            5 SSGSVGKPYICQSCGKGFSRPDHLNGHIKQV--HTSERPHKCQVWVSGPSSG   54 (54)
T ss_dssp             CCCCSSCCEECSSSCCEESSHHHHHHHHHHT--SCCCCCCCSSSSCCSSCCC
T ss_pred             CCCCCCCCeECCCCCcccCCHHHHHHHHHHh--cCCCCCccCCCCCCCCCCC
Confidence            45678999999999999999999999997 8  888887 999999999763

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.89  E-value=1e-09  Score=73.79  Aligned_cols=56  Identities=25%  Similarity=0.486  Sum_probs=43.1

Q ss_pred             cccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccccccCChhh
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSS   93 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~   93 (342)
                      ||+|+.|++.|.....|..|+++  |+++++                      |            .|+.|++.|...+.
T Consensus         1 p~~C~~C~~~f~~~~~l~~H~~~--h~~~~~----------------------~------------~C~~C~~~f~~~~~   44 (57)
T 1bbo_A            1 KYICEECGIRXKKPSMLKKHIRT--HTDVRP----------------------Y------------HCTYCNFSFKTKGN   44 (57)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH--TSSCCC----------------------E------------ECSSSSCEESSHHH
T ss_pred             CCcCCCCcCcCCCHHHHHHHHHh--cCCCCC----------------------c------------cCCCCCchhcCHHH
Confidence            69999999999999999999999  776544                      2            24556666777777


Q ss_pred             HHHHHhhcCCCC
Q 019380           94 LIKHKEACSLSA  105 (342)
Q Consensus        94 L~~H~~~h~~~~  105 (342)
                      |..|+++|++++
T Consensus        45 l~~H~~~h~~~k   56 (57)
T 1bbo_A           45 LTKHMKSKAHSK   56 (57)
T ss_dssp             HHHHHHSSSSCC
T ss_pred             HHHHHHHhcccC
Confidence            777777776654

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=98.86  E-value=2.2e-09  Score=87.83  Aligned_cols=73  Identities=16%  Similarity=0.245  Sum_probs=63.9

Q ss_pred             ccccCccccCChhhhhhhc----C--CC--------cccCCCCCcccCCc----------------ccc--cccccCChh
Q 019380           45 KCAVCQKLSKSFESLREHL----T--GP--------LSKAHCSGIFSDRG----------------CNL--CMNIFDSPS   92 (342)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~----~--~~--------~~C~~C~k~f~~~~----------------C~~--C~k~F~~~~   92 (342)
                      .|..|++.|.+...|..|+    .  .+        |.|..|++.|....                |+.  |++.|....
T Consensus        27 ~C~~C~~~f~~~~~L~~H~~~~H~~~~~~~~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~~~C~~~f~~~~  106 (155)
T 2rpc_A           27 PKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSE  106 (155)
T ss_dssp             SCCCCCCCBSSHHHHHHHHHTTTSCCTTCSSCCCCBTTCTTSSCCCSSHHHHHHHTHHHHCCCSEECSCTTTCCEESCHH
T ss_pred             ccccCCcccCCHHHHHHHHHhhcCCCcccCCccccccCCCCcccccCCHHHHHHHHHhcCCCCcccCCcCCCCCccCCHH
Confidence            9999999999999999997    1  12        78999999998752                988  999999999


Q ss_pred             hHHHHHhhcCCCCCCCCcc--cccccc
Q 019380           93 SLIKHKEACSLSAPVPFKI--SGAIDE  117 (342)
Q Consensus        93 ~L~~H~~~h~~~~~~~~~~--c~~~~~  117 (342)
                      .|..|+++|++++++.|+.  |++...
T Consensus       107 ~L~~H~~~h~~~~~~~C~~~~C~k~f~  133 (155)
T 2rpc_A          107 NLKIHKRTHTGEKPFKCEFEGCDRRFA  133 (155)
T ss_dssp             HHHHHHTTTCSSCSBCCSSTTCCCCBS
T ss_pred             HHHHHHHhhCCCCCccCCCCCCCCccC
Confidence            9999999999999999996  876644

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.86  E-value=1.5e-09  Score=77.89  Aligned_cols=62  Identities=16%  Similarity=0.294  Sum_probs=45.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCccccccccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIF   88 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~F   88 (342)
                      .++++||+|+.|++.|..+..|..|++.+ |+++.                     ++|            .|+.|++.|
T Consensus        10 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~-h~~~~---------------------~~~------------~C~~C~~~f   55 (77)
T 2ct1_A           10 HSGEKPYECYICHARFTQSGTMKMHILQK-HTENV---------------------AKF------------HCPHCDTVI   55 (77)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHH-SSSSC---------------------SSE------------ECSSSSCEE
T ss_pred             cCCCCCeECCCcCchhCCHHHHHHHHHHh-cCCCC---------------------Ccc------------CCCCCCCcc
Confidence            46788999999999999999999998731 65431                     123            356677778


Q ss_pred             CChhhHHHHHhhcCCC
Q 019380           89 DSPSSLIKHKEACSLS  104 (342)
Q Consensus        89 ~~~~~L~~H~~~h~~~  104 (342)
                      .....|..|++.+++.
T Consensus        56 ~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A           56 ARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             SSHHHHHHHHHHTSCC
T ss_pred             CCHHHHHHHHHHhCCC
Confidence            8888888888876644

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.86  E-value=2.2e-09  Score=80.94  Aligned_cols=73  Identities=16%  Similarity=0.275  Sum_probs=56.7

Q ss_pred             cccCCHHHHHHHHhhhccCCCCC-ccccCcccc-CChhhhhhhc----CCCcccCCCCCcccCCcccccccccCChhhHH
Q 019380           22 KQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLS-KSFESLREHL----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLI   95 (342)
Q Consensus        22 k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f-~~~~~l~~H~----~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~   95 (342)
                      ..|.....|..|++.  |.++++ .|..|++.| .+...|..|+    .++|            .|.+|++.|..++.|+
T Consensus        14 ~~~~~~~~~~~~~~~--~~~~~~~~C~~C~k~F~~~~~~L~~H~~~h~~k~~------------~C~~Cgk~F~~~~~L~   79 (96)
T 2ctd_A           14 PVYAAGSLEEQWYLE--IVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQEMF------------TCHHCGKQLRSLAGMK   79 (96)
T ss_dssp             CSSCTTCHHHHHHHH--HHHTSCEECTTTCSCEESSHHHHHHHHHHHCCCCC------------CCSSSCCCCSSHHHHH
T ss_pred             CCCCCchHHHHHHHH--hcCCCCcCCCCCCCCcccCHHHHHHHHHHHCCCCe------------ECCCCCCeeCCHHHHH
Confidence            356677778888888  766766 899999999 8888888887    2333            4688999999999999


Q ss_pred             HH-HhhcCCCCCCC
Q 019380           96 KH-KEACSLSAPVP  108 (342)
Q Consensus        96 ~H-~~~h~~~~~~~  108 (342)
                      .| +++|.++..+.
T Consensus        80 ~H~~~~H~~~p~~~   93 (96)
T 2ctd_A           80 YHVMANHNSLPSGP   93 (96)
T ss_dssp             HHHHHHTCCCSSCS
T ss_pred             HHhHHhcCCCCCCC
Confidence            99 88887654433

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.82  E-value=1.4e-09  Score=81.95  Aligned_cols=50  Identities=22%  Similarity=0.409  Sum_probs=46.9

Q ss_pred             CCCccccccccccc-CCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhh-c
Q 019380           11 STARHKCVACYKQF-KRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH-L   63 (342)
Q Consensus        11 ~~~~~~C~~C~k~f-~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H-~   63 (342)
                      ++++|+|+.|++.| .++..|..|+++  | ++++ .|.+|++.|.....|..| +
T Consensus        31 ~~~~~~C~~C~k~F~~~~~~L~~H~~~--h-~~k~~~C~~Cgk~F~~~~~L~~H~~   83 (96)
T 2ctd_A           31 DKGSVSCPTCQAVGRKTIEGLKKHMEN--C-KQEMFTCHHCGKQLRSLAGMKYHVM   83 (96)
T ss_dssp             HTSCEECTTTCSCEESSHHHHHHHHHH--H-CCCCCCCSSSCCCCSSHHHHHHHHH
T ss_pred             CCCCcCCCCCCCCcccCHHHHHHHHHH--H-CCCCeECCCCCCeeCCHHHHHHHhH
Confidence            57899999999999 999999999999  8 7777 999999999999999999 5

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.81  E-value=2.4e-09  Score=82.35  Aligned_cols=66  Identities=21%  Similarity=0.322  Sum_probs=58.2

Q ss_pred             cCCCCC-ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           39 HSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      |+++++ .| .|++.|.+...|..|+     .++|            .|+.|++.|.....|..|++.|++++++.|+.|
T Consensus         5 h~~~k~~~C-~C~~~f~~~~~l~~H~~~h~~~~~~------------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   71 (110)
T 2csh_A            5 SSGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPY------------GCGVCGKKFKMKHHLVGHMKIHTGIKPYECNIC   71 (110)
T ss_dssp             CCCCCCEEC-TTSCEESSHHHHHHHHHHHSCCCSE------------ECTTTSCEESSSHHHHHHHTTTCCCCCEECSSS
T ss_pred             CCCCCCEec-cCCCccCCHHHHHHHHHHcCCCcCc------------cCCCCCcccCCHHHHHHHHHHcCCCCCeeCCCC
Confidence            888888 99 9999999999999998     2344            468899999999999999999999999999999


Q ss_pred             ccccc
Q 019380          113 GAIDE  117 (342)
Q Consensus       113 ~~~~~  117 (342)
                      ++...
T Consensus        72 ~~~f~   76 (110)
T 2csh_A           72 AKRFM   76 (110)
T ss_dssp             CCEES
T ss_pred             cchhc
Confidence            87654

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.81  E-value=4e-09  Score=78.84  Aligned_cols=67  Identities=28%  Similarity=0.428  Sum_probs=57.4

Q ss_pred             cCCCCC-ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           39 HSVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      +.++++ .|..|++.|.+...|..|+     .++|            .|+.|++.|.....|..|++.|++++++.|+.|
T Consensus         3 ~~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~------------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C   70 (96)
T 2dmd_A            3 SGSSGPHKCEVCGKCFSRKDKLKTHMRCHTGVKPY------------KCKTCDYAAADSSSLNKHLRIHSDERPFKCQIC   70 (96)
T ss_dssp             CCCCCCCCBTTTTBCCCCHHHHHHHGGGCCCCCSE------------ECSSSCCEESSHHHHHHHHHHSCCCCCEECSSS
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHHHhcCCCCCE------------eCCCCCCccCCHHHHHHHHHHhCCCCCccCCCC
Confidence            445566 9999999999999999998     2333            468899999999999999999999999999999


Q ss_pred             ccccc
Q 019380          113 GAIDE  117 (342)
Q Consensus       113 ~~~~~  117 (342)
                      ++...
T Consensus        71 ~~~f~   75 (96)
T 2dmd_A           71 PYASR   75 (96)
T ss_dssp             SCEES
T ss_pred             CCccC
Confidence            87644

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.80  E-value=2.7e-09  Score=75.10  Aligned_cols=38  Identities=16%  Similarity=0.218  Sum_probs=34.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDE  117 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~~  117 (342)
                      .|+.|++.|.....|..|+++|++++++.|+.|++...
T Consensus        11 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C~~~f~   48 (70)
T 1x5w_A           11 KCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTK   48 (70)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGGCCSCSEECSSSSCEES
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCCCEeCCCCCCccC
Confidence            47889999999999999999999999999999987654

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.80  E-value=3.1e-09  Score=76.47  Aligned_cols=64  Identities=22%  Similarity=0.320  Sum_probs=54.1

Q ss_pred             CCCCC-cccc--CccccCChhhhhhhc------CCCcccCCCCCcccCCcccc--cccccCChhhHHHHHhhcCCCCCCC
Q 019380           40 SVHQP-KCAV--CQKLSKSFESLREHL------TGPLSKAHCSGIFSDRGCNL--CMNIFDSPSSLIKHKEACSLSAPVP  108 (342)
Q Consensus        40 ~~~~~-~C~~--C~~~f~~~~~l~~H~------~~~~~C~~C~k~f~~~~C~~--C~k~F~~~~~L~~H~~~h~~~~~~~  108 (342)
                      ++.++ .|..  |++.|.+...|..|+      .++|.            |+.  |++.|..+..|..|+++|++++++.
T Consensus         3 ~~~~~~~C~~~~C~~~f~~~~~L~~H~~~~H~~~~~~~------------C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~   70 (79)
T 2dlk_A            3 SGSSGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFS------------CPEPACGKSFNFKKHLKEHMKLHSDTRDYI   70 (79)
T ss_dssp             SCCSSEECSSTTTCCEESSHHHHHHHHHHGGGSCCCEE------------CSCTTTCCEESSHHHHHHHHHHHHTSCCCS
T ss_pred             CCCCCccCCCCCCcCccCCHHHHHHHHHHHhCCCCCeE------------CCCCCCcCccCCHHHHHHHHHHhCCCCCee
Confidence            45555 6665  999999999999997      23444            566  9999999999999999999999999


Q ss_pred             Ccccccc
Q 019380          109 FKISGAI  115 (342)
Q Consensus       109 ~~~c~~~  115 (342)
                      |+.|++.
T Consensus        71 C~~C~k~   77 (79)
T 2dlk_A           71 CEFSGPS   77 (79)
T ss_dssp             CCSSSCC
T ss_pred             CCCCCCC
Confidence            9999875

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.79  E-value=9.6e-10  Score=79.00  Aligned_cols=38  Identities=13%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             cccccccccCChhhHHHHHh-hcCCC-CCCCCcccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKE-ACSLS-APVPFKISGAIDE  117 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~-~h~~~-~~~~~~~c~~~~~  117 (342)
                      .|+.|++.|.....|..|++ .|.++ +++.|+.|++...
T Consensus        17 ~C~~C~k~f~~~~~L~~H~~~~h~~~~~~~~C~~C~~~f~   56 (77)
T 2ct1_A           17 ECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIA   56 (77)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHSSSSCSSEECSSSSCEES
T ss_pred             ECCCcCchhCCHHHHHHHHHHhcCCCCCccCCCCCCCccC
Confidence            35789999999999999997 56664 8999999997654

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.79  E-value=2e-09  Score=81.34  Aligned_cols=53  Identities=25%  Similarity=0.369  Sum_probs=48.9

Q ss_pred             CCCCCcccccccccccC-CHHHHHHHHhhhccCC-CCC-ccccCccccCChhhhhhhc
Q 019380            9 KRSTARHKCVACYKQFK-RKDHLIEHMKISYHSV-HQP-KCAVCQKLSKSFESLREHL   63 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~-~~~~L~~H~~~~~H~~-~~~-~C~~C~~~f~~~~~l~~H~   63 (342)
                      .+++++|+|+.|++.|. .+..|..|+++  |++ +++ .|..|++.|.+...|..|+
T Consensus        19 h~~~~~~~C~~C~k~f~~~~~~L~~H~~~--h~~~~~~~~C~~C~k~F~~~~~L~~H~   74 (98)
T 2gqj_A           19 IHERGEAVCPTCNVVTRKTLVGLKKHMEV--CQKLQDALKCQHCRKQFKSKAGLNYHT   74 (98)
T ss_dssp             TTTTSCCCCTTTCCCCSSCSHHHHHHHHH--HHHHHHHHSCSSSCCCCSCHHHHHHHH
T ss_pred             hccCCCcCCCCCCCChhhhHHHHHHHHHH--HcCCCCCEECCCCCCccCCHHHHHHHH
Confidence            35789999999999999 99999999999  776 666 9999999999999999998

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.76  E-value=3.1e-09  Score=80.94  Aligned_cols=38  Identities=11%  Similarity=0.138  Sum_probs=33.2

Q ss_pred             cccccccccCChhhHHHHHh-hc---CCCCCCCCcccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKE-AC---SLSAPVPFKISGAIDE  117 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~-~h---~~~~~~~~~~c~~~~~  117 (342)
                      .|+.|++.|..++.|..|++ .|   .+++|+.|++|++...
T Consensus        20 ~C~~Cgk~F~~~~~L~~H~r~~H~~~~~ekpf~C~~Cgk~F~   61 (102)
T 2ghf_A           20 ECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTK   61 (102)
T ss_dssp             ECSSCSCEESCHHHHHHHHHHHCSSCCCSCCEEETTTTEEES
T ss_pred             CCCCCCCccCCHHHHHHHHHhhCCCCCCCCCcCCCCCCcccC
Confidence            46889999999999999998 58   5789999999998755

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=98.75  E-value=1.1e-08  Score=77.83  Aligned_cols=65  Identities=22%  Similarity=0.328  Sum_probs=55.7

Q ss_pred             CCCC-ccccCccccCChhhhhhhc---C--CCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCCCCCCCCccccc
Q 019380           41 VHQP-KCAVCQKLSKSFESLREHL---T--GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGA  114 (342)
Q Consensus        41 ~~~~-~C~~C~~~f~~~~~l~~H~---~--~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~  114 (342)
                      .+++ .|..|++.|.....|..|+   .  ++|            .|+.|++.|.....|..|++.|++++++.|+.|++
T Consensus        14 ~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~------------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~   81 (106)
T 2ee8_A           14 TKKEFICKFCGRHFTKSYNLLIHERTHTDERPY------------TCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGK   81 (106)
T ss_dssp             CCCCCBCSSSCCBCSSHHHHHHHHHHHCCSCCC------------BCSSSCCBCSCHHHHHHHGGGSCCCCTTSCSSSCC
T ss_pred             CCcCeECCCCCCccCCHHHHHHHHHHcCCCCCc------------CCCCccchhCCHHHHHHHHHHhCCCCCeECCCcCC
Confidence            3444 9999999999999999998   2  344            46889999999999999999999999999999987


Q ss_pred             ccc
Q 019380          115 IDE  117 (342)
Q Consensus       115 ~~~  117 (342)
                      ...
T Consensus        82 ~f~   84 (106)
T 2ee8_A           82 GFC   84 (106)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            644

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.73  E-value=9.1e-09  Score=66.69  Aligned_cols=43  Identities=26%  Similarity=0.352  Sum_probs=38.9

Q ss_pred             CCCCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCcc
Q 019380            7 LPKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQK   51 (342)
Q Consensus         7 ~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~   51 (342)
                      .+.+++++|+|+.|++.|..+..|..|+++  |+++++ .|.+|++
T Consensus         5 ~~~~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C~k   48 (48)
T 2epr_A            5 SSGRTRKQVACEICGKIFRDVYHLNRHKLS--HSGEKPYSSGPSSG   48 (48)
T ss_dssp             SCCCCCCSEEETTTTEEESSHHHHHHHGGG--SCSCCCCCSCCCCC
T ss_pred             CCCCCCcCeeCCCCCcccCCHHHHHHHHHh--cCCCCCccCCCCCC
Confidence            355789999999999999999999999999  988887 9999985

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.73  E-value=8.1e-09  Score=76.97  Aligned_cols=66  Identities=21%  Similarity=0.328  Sum_probs=56.2

Q ss_pred             CCCCC-ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCCC--CCCCCcc
Q 019380           40 SVHQP-KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLS--APVPFKI  111 (342)
Q Consensus        40 ~~~~~-~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~~--~~~~~~~  111 (342)
                      +++++ .|..|++.|.+...|..|+     .++|            .|+.|++.|.....|..|++.|+++  +++.|+.
T Consensus         3 ~~~~~~~C~~C~~~f~~~~~l~~H~~~h~~~~~~------------~C~~C~~~f~~~~~l~~H~~~h~~~~~~~~~C~~   70 (95)
T 2yt9_A            3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPY------------SCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQS   70 (95)
T ss_dssp             CCCSCEECSSSCCEESSSHHHHHHHHHSCSSCSE------------ECSSSCCEESCHHHHHHHHHHHCCCCCSSBCCSS
T ss_pred             CCCCCeECCCCCCccCChHHHHHHHHhcCCCCCC------------cCCCCCCccCCHHHHHHHHHHhcCCCCCceECCC
Confidence            45555 9999999999999999998     2334            4688999999999999999999997  8999999


Q ss_pred             cccccc
Q 019380          112 SGAIDE  117 (342)
Q Consensus       112 c~~~~~  117 (342)
                      |++...
T Consensus        71 C~~~f~   76 (95)
T 2yt9_A           71 CGKGFS   76 (95)
T ss_dssp             SCCCBS
T ss_pred             ccchhC
Confidence            987643

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=98.72  E-value=3.2e-09  Score=75.20  Aligned_cols=38  Identities=24%  Similarity=0.377  Sum_probs=34.4

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDE  117 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~~  117 (342)
                      .|+.|++.|.....|..|++.|.+++++.|+.|++...
T Consensus        16 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~C~~C~~~f~   53 (72)
T 1x6e_A           16 GCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFS   53 (72)
T ss_dssp             ECSSSCCEESSHHHHHHHHHGGGCSCCEECSSSCCEES
T ss_pred             cCCCCCCccCCHHHHHHHHHhcCCCCCeECCCCCcccC
Confidence            36889999999999999999999999999999987654

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=98.72  E-value=2.2e-09  Score=82.19  Aligned_cols=69  Identities=14%  Similarity=0.118  Sum_probs=59.2

Q ss_pred             HhhhccCCCCC-ccccCccccCChhhhhhhc---CCCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCCCCCCCC
Q 019380           34 MKISYHSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (342)
Q Consensus        34 ~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~  109 (342)
                      +++  |+++++ .|..|++.|.....|..|+   .++|            .|+.|++.|.....|..|++ |.+++++.|
T Consensus         8 ~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~------------~C~~C~~~f~~~~~l~~H~~-H~~~~~~~C   72 (107)
T 1wjp_A            8 ASP--VENKEVYQCRLCNAKLSSLLEQGSHERLCRNAA------------VCPYCSLRFFSPELKQEHES-KCEYKKLTC   72 (107)
T ss_dssp             CCC--CCCCCCCBCTTTCCBCSSHHHHHHHHHHHHHSB------------CCTTTCCCBSSHHHHHHHHH-HCSTGGGEE
T ss_pred             Ccc--cCCCcCeECCCCCCccCCHHHHHHHHHHCCCCc------------cCCCCCCccCCHHHHHHHHH-cCCCCCccC
Confidence            455  888877 9999999999999999998   3444            46889999999999999996 999999999


Q ss_pred             cccccccc
Q 019380          110 KISGAIDE  117 (342)
Q Consensus       110 ~~c~~~~~  117 (342)
                      +.|++...
T Consensus        73 ~~C~~~f~   80 (107)
T 1wjp_A           73 LECMRTFK   80 (107)
T ss_dssp             GGGTEECS
T ss_pred             ccccchhC
Confidence            99987644

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=98.69  E-value=1.6e-08  Score=71.35  Aligned_cols=57  Identities=23%  Similarity=0.524  Sum_probs=45.9

Q ss_pred             CCCCCCCCCcccccc--cccccCCHHHHHHHHhhhccCCCCC-cccc--CccccCChhhhhhhc
Q 019380            5 AELPKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCAV--CQKLSKSFESLREHL   63 (342)
Q Consensus         5 ~~~~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~--C~~~f~~~~~l~~H~   63 (342)
                      ....++..++|.|+.  |++.|..+..|..|+++  |+++++ .|..  |++.|.....|..|+
T Consensus         8 ~~~~~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~~~C~k~f~~~~~l~~H~   69 (72)
T 2epa_A            8 PQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRT--HTGEKPFSCSWKGCERRFARSDELSRHR   69 (72)
T ss_dssp             CCCCCCCCCCEECSSTTTCCEESSHHHHHHHHHH--HSSSCSEECCCTTCCCEESSHHHHHHHT
T ss_pred             CCCCccccCceeCCCCCCccccCCHHHHHHHHHh--cCCCCCccCCCCCCCcccCCHHHHHhHh
Confidence            445567889999988  99999999999999999  887776 7743  777777777666664

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.67  E-value=1.3e-08  Score=64.92  Aligned_cols=41  Identities=22%  Similarity=0.315  Sum_probs=37.3

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCc
Q 019380            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQ   50 (342)
Q Consensus         8 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~   50 (342)
                      ..++++||+|+.|++.|..+..|..|+++  |+++++ .|+.||
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~~~~~C~~cg   45 (45)
T 2epq_A            4 GSSGEKPYSCPVCGLRFKRKDRMSYHVRS--HDGSVGKSGPSSG   45 (45)
T ss_dssp             CCSSCCSSEETTTTEECSCHHHHHHHHHH--HSCCCCCCCCCCC
T ss_pred             CcCCCCCCcCCCCCcccCCHHHHHHHHHH--ccCCCCCCCcCCC
Confidence            45689999999999999999999999999  888887 899885

>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*

Probab=98.67  E-value=6.6e-08  Score=96.49  Aligned_cols=145  Identities=14%  Similarity=0.154  Sum_probs=99.9

Q ss_pred             cceecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcC
Q 019380          125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  204 (342)
Q Consensus       125 ~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~~~  204 (342)
                      .++++|+||||.+.... ++ ..+.++..+|+..|   + |...     ..+ |     +.+++++.++++.|.+|+   
T Consensus        27 ~~va~DtEttgl~~~~~-~i-v~I~~~~~~g~~~y---i-p~~~-----~~~-~-----~~~~l~~~~vl~~L~~~L---   86 (605)
T 2kfn_A           27 PVFAFDTETDSLDNISA-NL-VGLSFAIEPGVAAY---I-PVAH-----DYL-D-----APDQISRERALELLKPLL---   86 (605)
T ss_dssp             SSEEEEEEESCSCTTTC-CE-EEEEEEEETTEEEE---E-ECCC-----CST-T-----CCCCCCHHHHHHHHHHHH---
T ss_pred             CeEEEEEecCCCCcccC-ce-EEEEEEEcCCcEEE---E-eccc-----ccc-c-----cccccCHHHHHHHHHHHH---
Confidence            67999999999864211 12 23333323444332   3 1111     001 2     234567899999999999   


Q ss_pred             CCccccccCCCCCeEEEeeCchhhhhhcc---ccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCC-------C
Q 019380          205 ESTGRLMLDDGKARLLVGHGLEHDLDSLR---MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQ-------S  274 (342)
Q Consensus       205 ~~~~~~~~~~~~~~~lvgh~~~~D~~~l~---~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~-------~  274 (342)
                               ++.+.++|+||+.||+.+|.   +..+ ..++||+..+..+.|...+++|+.|+..|+|+...       .
T Consensus        87 ---------~d~~i~kV~hnak~D~~~L~~~Gi~l~-~~~~DT~laayLL~p~~~~~~L~~La~~~Lg~~~i~~~~~~gK  156 (605)
T 2kfn_A           87 ---------EDEKALKVGQNLKYDRGILANYGIELR-GIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGK  156 (605)
T ss_dssp             ---------TCTTSCEEESSHHHHHHHHHTTTCCCC-CEEEEHHHHHHHHCTTSSCCSHHHHHHHHSCCCCCCHHHHHCS
T ss_pred             ---------cCCCCeEEEECcHHHHHHHHHCCCCCC-CccccHHHHHHHhCCCCCCCCHHHHHHHhcCCCcccHHHHhCC
Confidence                     33445899999999999997   2222 35899999999998877789999999999876531       0


Q ss_pred             -----C--C-------CCcHHHHHHHHHHHHHHHhhhhh
Q 019380          275 -----G--V-------HDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       275 -----~--~-------H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                           .  .       |.|..||.++++||..+..+..+
T Consensus       157 g~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L~~~L~~  195 (605)
T 2kfn_A          157 GKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQK  195 (605)
T ss_dssp             STTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             CcccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 1  1       45889999999999999876543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=98.65  E-value=5.8e-09  Score=72.33  Aligned_cols=38  Identities=13%  Similarity=0.211  Sum_probs=33.2

Q ss_pred             cccccccccCChhhHHHHHhh-c-CCCCCCCCcccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEA-C-SLSAPVPFKISGAIDE  117 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~-h-~~~~~~~~~~c~~~~~  117 (342)
                      .|+.|++.|...+.|..|++. | .+++++.|+.|++...
T Consensus        12 ~C~~C~k~f~~~~~l~~H~~~~H~~~~~~~~C~~C~k~f~   51 (66)
T 2drp_A           12 RCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFT   51 (66)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHSSSSCCCEECTTTCCEES
T ss_pred             ECCCCcchhCCHHHHHHHHHHHcCCCCcCeECCCCCCccC
Confidence            368899999999999999998 6 5899999999987654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=98.64  E-value=1e-08  Score=74.05  Aligned_cols=52  Identities=33%  Similarity=0.545  Sum_probs=48.4

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (342)
                      +++++|+|+.|++.|..+..|..|+++  |+++++ .|..|++.|.+.+.|..|+
T Consensus        25 ~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   77 (82)
T 2kmk_A           25 SDTRPYPCQYCGKRFHQKSDMKKHTFI--HTGEKPHKCQVCGKAFSQSSNLITHS   77 (82)
T ss_dssp             HTCCCEECSSSCCEESSHHHHHHHHHH--HHTCCCEECTTTSCEESSHHHHHHHH
T ss_pred             CCCCCeeCCcCChhhCCHHHHHHHHHH--hcCCCCCcCCCcchhhCChHHHHHHH
Confidence            367899999999999999999999999  888877 9999999999999999996

>4hec_A Putative uncharacterized protein; ssgcid, structural genomics, SEA structural genomics center for infectious disease, unknown; 1.80A {Mycobacterium tuberculosis}

Probab=98.63  E-value=1.7e-07  Score=78.96  Aligned_cols=153  Identities=16%  Similarity=0.154  Sum_probs=91.3

Q ss_pred             cceecccccccccCCCcccccceEEeecCCCCeEEeeecCC-CCCcccccc--ccCCCCHhhhcCCCChHHHHHHHHHHH
Q 019380          125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQP-QLPVTNYRY--EVTGLTEEDIKNAMPLKEVKDKILEIL  201 (342)
Q Consensus       125 ~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p-~~~i~~~~~--~i~GIt~e~l~~~~~~~~v~~~~~~~l  201 (342)
                      .-+.+|||+|+.+.  .+++ ..+.+|..+|...|...... ...+.++..  -+.++.........++.++..+|.+||
T Consensus        23 ~r~FlDTEFt~d~~--~~eL-ISIGlV~EdGrEFYav~~d~d~~~~~~wVr~~Vlp~L~~~~~~~~~s~~~i~~~L~~FL   99 (190)
T 4hec_A           23 VRYFYDTEFIEDGH--TIEL-ISIGVVAEDGREYYAVSTEFDPERAGSWVRTHVLPKLPPPASQLWRSRQQIRLDLEEFL   99 (190)
T ss_dssp             EEEEEEEEEEECSS--CEEE-EEEEEEETTSCEEEEEETTSCGGGCCHHHHHHTGGGSCCTTSTTEECHHHHHHHHHHHT
T ss_pred             eEEEEeeeecCCCC--CCCE-EEEEEEcCCCCEEEEEecCCChhhCcHHHHhccccCCCCCcccccCCHHHHHHHHHHHH
Confidence            34789999998543  3445 77788888998755443221 122233322  135555544555678999999999999


Q ss_pred             hcCCCccccccCCCCCeEEEeeCchhhhhhccccCCCcceeeccccccccccCCCCccHHHHHHHHhCCc---C-CCCCC
Q 019380          202 NNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYD---I-QSGVH  277 (342)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~---~-~~~~H  277 (342)
                      ...         +.....|++|+..+|..+|.--+..  +.+.   .+.+ +. ...-|..+.... |..   . ..+.|
T Consensus       100 ~~~---------~~~~~eLwa~~~~yD~~~L~ql~g~--m~~l---P~~~-p~-~~~dlr~~~~~~-g~~~lp~~~~~~H  162 (190)
T 4hec_A          100 RID---------GTDSIELWAWVGAYDHVALCQLWGP--MTAL---PPTV-PR-FTRELRQLWEDR-GCPRMPPRPRDVH  162 (190)
T ss_dssp             TTT---------SSCEEEEEESSCHHHHHHHHTTTSS--GGGS---CTTS-CS-SCEEHHHHHHHT-TCCCCCC-----C
T ss_pred             Hhc---------CCCCCEEEEecccccHHHHHHHhcc--cccC---Cccc-ch-hhHHHHHHHHHc-CCCCCCCCCCCCc
Confidence            321         1133469999999999998733221  1111   1100 10 123466666654 432   1 12279


Q ss_pred             CcHHHHHHHHHHHHHHHhhh
Q 019380          278 DPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       278 ~A~~Da~~t~~l~~~~~~~~  297 (342)
                      +||.||+..+..|+.+....
T Consensus       163 ~AL~DAR~n~~~~~~~~~~~  182 (190)
T 4hec_A          163 DALVDARDQLRRFRLITSTD  182 (190)
T ss_dssp             CHHHHHHHHHHHHHHHHC--
T ss_pred             CcHHHHHHHHHHHHHHhCcc
Confidence            99999999999999887653

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=2.9e-08  Score=63.54  Aligned_cols=39  Identities=21%  Similarity=0.284  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|.+|
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2elz_A            7 GSVEKPYKCEDCGKGYNRRLNLDMHQRV--HMGEKTSGPSSG   46 (46)
T ss_dssp             CCCCSSCBCSSSCCBCSSHHHHHHHGGG--GGSCCCCCSCCC
T ss_pred             CCCCCCeeCcccCchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88877

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=3.2e-08  Score=63.29  Aligned_cols=39  Identities=28%  Similarity=0.443  Sum_probs=35.8

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.+|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytn_A            7 GTGKKPYKCNECGKVFTQNSHLARHRGI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCSSCBCTTTCCBCSSHHHHHHHGGG--TSCCCCCSCCCC
T ss_pred             CCCCcCeECCCCCCeeCCHHHHHHHhhh--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88876

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=3.1e-08  Score=63.38  Aligned_cols=39  Identities=31%  Similarity=0.423  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|.+|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytq_A            7 GAGEKPYGCSECGKAFSSKSYLIIHMRT--HSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSCBCSSSCCBCSCHHHHHHHHTT--TCCSCSSCCCCC
T ss_pred             cCCCCCcCCCccChhhCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88876

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.62  E-value=3.2e-08  Score=63.23  Aligned_cols=39  Identities=26%  Similarity=0.436  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eq4_A            7 GTGEKLYNCKECGKSFSRAPCLLKHERL--HSGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCCCCBTTTTBCCSCHHHHHHHHHH--CCSSSCCCCCCC
T ss_pred             CCCCCCeECCCCCCccCchHHHHHHHHh--cCCCCCCCCCCC
Confidence            4688999999999999999999999999  988887 88876

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=98.61  E-value=1.5e-08  Score=74.66  Aligned_cols=52  Identities=25%  Similarity=0.649  Sum_probs=48.4

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (342)
                      +++++|.|+.|++.|.++..|..|+++  |+++++ .|..|++.|.+.+.|..|+
T Consensus        30 ~~~~~~~C~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   82 (90)
T 1a1h_A           30 TGQKPFQCRICMRNFSRSDHLTTHIRT--HTGEKPFACDICGRKFARSDERKRHT   82 (90)
T ss_dssp             HCCCCEECTTTCCEESCHHHHHHHHHH--HHCCCCEECTTTCCEESSHHHHHHHH
T ss_pred             CCCCCccCCCCCcccCCHHHHHHHHHH--cCCCCCccCCCCCchhCCHHHHHHHH
Confidence            357899999999999999999999999  888877 9999999999999999997

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.61  E-value=3.1e-08  Score=63.34  Aligned_cols=39  Identities=21%  Similarity=0.301  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em0_A            7 GMGEKTWKCRECDMCFSQASSLRLHQNV--HVGEKPSGPSSG   46 (46)
T ss_dssp             SCCCCCCCCSSSCCCCSSHHHHHHHGGG--GSSSSCSCSSCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHH--cCCCCCcCCCCC
Confidence            4689999999999999999999999999  988887 88876

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.61  E-value=3.1e-08  Score=63.38  Aligned_cols=39  Identities=26%  Similarity=0.512  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emk_A            7 GTGEKPYECKECGKAFSQTTHLIQHQRV--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSSCSCBCSSSCCBCSCHHHHHHHHHH--HSSCCCSSCCCC
T ss_pred             cCCCCceECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88876

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.61  E-value=2.8e-08  Score=63.63  Aligned_cols=39  Identities=31%  Similarity=0.484  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2emf_A            7 GTGGKHFECTECGKAFTRKSTLSMHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSCCEECSSSCCEESCHHHHHHHGGG--TSCSSCSCCCCC
T ss_pred             cCCCCCeECCCCCchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88876

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=2.8e-08  Score=62.92  Aligned_cols=39  Identities=23%  Similarity=0.414  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   44 (44)
T 2emx_A            5 SSGEKPFGCSCCEKAFSSKSYLLVHQQT--HAEEKPSGPSSG   44 (44)
T ss_dssp             CSSCCCEECSSSSCEESSHHHHHHHHHH--HTSSCSCSCCCC
T ss_pred             cCCCcCccCCCCCcccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88876

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.3e-08  Score=63.14  Aligned_cols=39  Identities=28%  Similarity=0.482  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2eop_A            7 GTGEKPHECRECGKSFSFNSQLIVHQRI--HTGENPSGPSSG   46 (46)
T ss_dssp             CCCCCSCBCTTTCCBCSSHHHHHHHHTT--TTTSCCSCCCCC
T ss_pred             cCCCCCeeCCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88876

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.5e-08  Score=63.12  Aligned_cols=39  Identities=23%  Similarity=0.399  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2epz_A            7 GTGEKPFDCIDCGKAFSDHIGLNQHRRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSBCCTTTCCCBSSHHHHHHHHTT--TTTCCCCSSCCC
T ss_pred             cCCCCCeECCCCCceeCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4688999999999999999999999999  988887 88876

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.60  E-value=3e-08  Score=63.37  Aligned_cols=39  Identities=26%  Similarity=0.380  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2el4_A            7 GTGVKPYGCSQCAKTFSLKSQLIVHQRS--HTGVKPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHGGG--SSSCCCSCCTTC
T ss_pred             CCCCCceECCCCCchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  998887 88876

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=3.1e-08  Score=63.37  Aligned_cols=39  Identities=23%  Similarity=0.349  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2em7_A            7 GTGEKPYKCEECGKGFICRRDLYTHHMV--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHGGG--GTTCCCSSTTCC
T ss_pred             CCCCcCccCCCccchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4688999999999999999999999999  888887 88876

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.4e-08  Score=63.18  Aligned_cols=39  Identities=23%  Similarity=0.389  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2eoq_A            7 GTGEKPFKCDICGKSFCGRSRLNRHSMV--HTAEKPSGPSSG   46 (46)
T ss_dssp             SSSSCSCCCSSSCCCCSSHHHHHHHHHH--TTCCCSSSCCCC
T ss_pred             CCCCCCcCCCcCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4688999999999999999999999999  988887 88876

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=2.4e-08  Score=71.62  Aligned_cols=38  Identities=21%  Similarity=0.296  Sum_probs=34.0

Q ss_pred             cccccccccCChhhHHHHHhhcCC---CCCCCCcccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSL---SAPVPFKISGAIDE  117 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~---~~~~~~~~c~~~~~  117 (342)
                      .|+.|++.|.....|..|+++|++   ++++.|+.|++...
T Consensus         9 ~C~~C~k~f~~~~~L~~H~~~h~~~~~~~~~~C~~C~k~f~   49 (78)
T 2d9h_A            9 QCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFE   49 (78)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHHHTTTCCEECTTTCCEES
T ss_pred             ECCCCCCeeCCHHHHHHHHHHhhccCCCcccCCCCCCchhC
Confidence            368899999999999999999996   89999999998755

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.1e-08  Score=63.34  Aligned_cols=39  Identities=26%  Similarity=0.423  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eml_A            7 GTGEKPYECSVCGKAFSHRQSLSVHQRI--HSGKKPSGPSSG   46 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHGG--GSSCCCSCSSCC
T ss_pred             cCCCCCeeCCCcCCccCCHHHHHHHHHH--hcCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88876

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.60  E-value=3.6e-08  Score=63.01  Aligned_cols=39  Identities=23%  Similarity=0.339  Sum_probs=35.8

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2enc_A            7 GSGEKPFKCEECGKGFYTNSQCYSHQRS--HSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHH--SCCSSCCSSCCC
T ss_pred             CCCCCCcCCCCCCCcCCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  998887 88877

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.1e-08  Score=63.32  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ene_A            7 GTGEKPYKCNECGKVFRHNSYLSRHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHTT--TCCCCCCSCCCC
T ss_pred             CCCCCCeECCCCCchhCChHHHHHHHhh--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88877

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.60  E-value=3.5e-08  Score=63.05  Aligned_cols=39  Identities=28%  Similarity=0.463  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eoe_A            7 GTGEKPYKCNECGKVFTQNSHLANHQRI--HTGVKPSGPSSG   46 (46)
T ss_dssp             CCCCCSSEETTTTEECSSHHHHHHHHGG--GSCCCSCSSCCC
T ss_pred             CCCCCCeECCCcChhhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88877

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3.2e-08  Score=63.27  Aligned_cols=39  Identities=31%  Similarity=0.490  Sum_probs=35.8

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|.+|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2eq0_A            7 GTGEKPYKCHECGKVFRRNSHLARHQLI--HTGEKPSGPSSG   46 (46)
T ss_dssp             TTCCCCEECTTTCCEESSHHHHHHHHTT--TCCCCCSCCSCC
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88876

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3.3e-08  Score=63.18  Aligned_cols=39  Identities=26%  Similarity=0.428  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2ep2_A            7 GTGEKPYECSICGKSFTKKSQLHVHQQI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHT--TSSCCSCCSCCC
T ss_pred             CCCCcCcCCCCCCcccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  998887 88876

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.59  E-value=3.8e-08  Score=62.98  Aligned_cols=39  Identities=26%  Similarity=0.436  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2el6_A            7 GAGVNPYKCSQCEKSFSGKLRLLVHQRM--HTREKPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHGG--GCCSSCCSCCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88876

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3.7e-08  Score=62.95  Aligned_cols=39  Identities=26%  Similarity=0.439  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ytr_A            7 GTGEKPYKCNECGKAFSQTSKLARHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCTTCCTTTCCCCSSHHHHHHHHTT--TTTCSCCCSCCC
T ss_pred             CCCCcCcCCCCCCCccCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88877

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3e-08  Score=63.35  Aligned_cols=39  Identities=33%  Similarity=0.583  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emm_A            7 GTGERPHKCNECGKSFIQSAHLIQHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHHH--HSCCCTTSSSCC
T ss_pred             cCCCCCeeCCCCChhhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88877

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.59  E-value=3.9e-08  Score=62.81  Aligned_cols=39  Identities=26%  Similarity=0.296  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eov_A            7 GTGEKPYKCSDCGKSFTWKSRLRIHQKC--HTGERHSGPSSG   46 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHHHH--HSCCSSCCSCCC
T ss_pred             CCCCCCccCCccChhhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 88876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=3e-08  Score=63.38  Aligned_cols=39  Identities=28%  Similarity=0.451  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emy_A            7 GTGENPYECHECGKAFSRKYQLISHQRT--HAGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHH--HTTSCCSCSSCC
T ss_pred             CCCCcCcCCCCCCcccCcHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88876

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.58  E-value=3.3e-08  Score=63.19  Aligned_cols=39  Identities=26%  Similarity=0.346  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|.+|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ysp_A            7 GTGEKPYKCEKCGKGYNSKFNLDMHQKV--HTGERPSGPSSG   46 (46)
T ss_dssp             CSSCCSEEETTTTEEESCHHHHHHHHTT--SCSCCSSCCSCC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHh--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  998887 88877

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.58  E-value=3.9e-08  Score=62.90  Aligned_cols=39  Identities=33%  Similarity=0.563  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em5_A            7 GSSTKSHQCHECGRGFTLKSHLNQHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCSCSEECSSSCCEESSHHHHHHHHTT--TSCSCCSSCCCC
T ss_pred             CCCCCCeECCcCCCccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4688999999999999999999999999  988887 88877

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=98.57  E-value=1.4e-08  Score=80.31  Aligned_cols=51  Identities=25%  Similarity=0.522  Sum_probs=46.5

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhc
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHL   63 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~   63 (342)
                      ++++||+|+.|++.|..+..|..|+++  | ...+.|..|++.|...+.|..|+
T Consensus        70 ~~~~~~~C~~C~k~f~~~~~l~~H~~~--H-~~~~~C~~C~k~f~~~~~l~~H~  120 (129)
T 2wbt_A           70 KAISQFVCPLCLMPFSSSVSLKQHIRY--T-EHTKVCPVCKKEFTSTDSALDHV  120 (129)
T ss_dssp             HHHCSEECTTTCCEESSHHHHHHHHHH--T-CCCCBCTTTCCBCSSHHHHHHHH
T ss_pred             CCCCCeECCCCCcccCCHhHHHHHHHH--C-CCCCCCCCCCcccCCHHHHHHHH
Confidence            467899999999999999999999999  8 33449999999999999999997

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=3.1e-08  Score=63.44  Aligned_cols=39  Identities=21%  Similarity=0.407  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ytm_A            7 GTGEKPYKCMECGKAFGDNSSCTQHQRL--HTGQRPSGPSSG   46 (46)
T ss_dssp             CSSCCSSSBTTTTBCCSSHHHHHHHHHH--HHSCCCCCCCCC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 88876

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=4e-08  Score=62.80  Aligned_cols=39  Identities=28%  Similarity=0.479  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2ytj_A            7 GTGEKPYICAECGKAFTIRSNLIKHQKI--HTKQKPSGPSSG   46 (46)
T ss_dssp             TSSCCSEECSSSCCEESSHHHHHHHHHH--TSCCCCSSCSCC
T ss_pred             CCCCcCeECCCCChhhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.57  E-value=4.1e-08  Score=62.70  Aligned_cols=39  Identities=23%  Similarity=0.437  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em9_A            7 GTGEKPYNCKECGKSFRWASCLLKHQRV--HSGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHGGG--GTSCCCCSTTCC
T ss_pred             CCCCcCeECCccccccCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88877

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=3.6e-08  Score=63.05  Aligned_cols=39  Identities=33%  Similarity=0.508  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2ytd_A            7 GSGEKPYKCSECGKAFHRHTHLNEHRRI--HTGYRPSGPSSG   46 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHH--HTCCCSSCSSCC
T ss_pred             cCCCcCeECCCCCCeeCChHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88876

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.57  E-value=3.7e-08  Score=62.95  Aligned_cols=39  Identities=33%  Similarity=0.520  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2ema_A            7 GTGEKRYKCNECGKVFSRNSQLSQHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CTTSCCEECSSSCCEESSHHHHHHHHTG--GGCCCCCSSSCC
T ss_pred             CCCCcCcCCCCCcchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88876

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.57  E-value=4.3e-08  Score=62.63  Aligned_cols=39  Identities=21%  Similarity=0.243  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2en8_A            7 GSGEKSHTCDECGKNFCYISALRIHQRV--HMGEKCSGPSSG   46 (46)
T ss_dssp             CCCCSSEECTTTCCEESSHHHHHHHHTT--TCCSCSSCCSCC
T ss_pred             CCCCCCeECCCcCcccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88876

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=5e-08  Score=62.57  Aligned_cols=39  Identities=23%  Similarity=0.445  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHh-hhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~-~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|++ +  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~~--H~~~k~~~C~~C   47 (47)
T 2epx_A            7 GTGKKPYECIECGKAFIQNTSLIRHWRYY--HTGEKPSGPSSG   47 (47)
T ss_dssp             CCCCCSBCCSSSCCCBSSHHHHHHHHTTT--TTTSCSSSCCCC
T ss_pred             cCCCCCEECCccCchhCChHHHHHHhHhh--cCCCCCCCCCCC
Confidence            468999999999999999999999999 8  988887 88876

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=3.6e-08  Score=63.04  Aligned_cols=39  Identities=28%  Similarity=0.485  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|.+|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~c   46 (46)
T 2ytk_A            7 GSGEKPYKCNECGKVFTQNSHLTNHWRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSSSCSEECSSSCCEESSHHHHHHHHHH--HSSSSCSSCCCC
T ss_pred             CCCCCCEeCCcCCCccCCHHHHHHHHHH--HCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.57  E-value=4.4e-08  Score=62.55  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2eme_A            7 GSGEKPYVCDYCGKAFGLSAELVRHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             TCCCCSEECSSSCCEESSHHHHHHHHGG--GCCCSCCSSCCC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            4688999999999999999999999999  888887 88877

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=98.57  E-value=3.5e-08  Score=72.48  Aligned_cols=57  Identities=21%  Similarity=0.323  Sum_probs=44.3

Q ss_pred             cCCCCC-ccccCccccCChhhhhhhc---CCCcccCCCCCcccCCcccccccccCChhhHHHHHh-hcCCCC
Q 019380           39 HSVHQP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKE-ACSLSA  105 (342)
Q Consensus        39 H~~~~~-~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~-~h~~~~  105 (342)
                      ++..++ .|.+|++.|.+...|.+|+   .+..++          .|+.|+++|..++.|.+|++ .|.+++
T Consensus        23 ~~~~~~h~C~~Cgk~F~~~~~L~~H~~~H~~~k~~----------~C~~C~k~F~~~~~L~~H~~~~H~~E~   84 (85)
T 2lv2_A           23 SASAECHLCPVCGESFASKGAQERHLRLLHAAQVF----------PCKYCPATFYSSPGLTRHINKCHPSEN   84 (85)
T ss_dssp             CCCCTTEECTTSCCEESSHHHHHHHHHTTSCSSSE----------ECTTSSCEESSHHHHHHHHHTTCTTCC
T ss_pred             CCCCCCEECCCCCCCcCcHHHHhhhhhhccCCCcc----------CCCCCCCEeCCHHHHHHhCcccCcCCC
Confidence            445555 8999999999999999998   332222          46889999999999999974 566553

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=2.9e-08  Score=63.52  Aligned_cols=39  Identities=31%  Similarity=0.439  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.+++.|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2eoo_A            7 GSGERPYGCNECGKNFGRHSHLIEHLKR--HFREKSSGPSSG   46 (46)
T ss_dssp             CSCCCCEECSSSCCEESSHHHHHHHHHH--HHSTTSSCCSCC
T ss_pred             CCCCCCEEccccCcccCCHHHHHHHHHH--HcCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 88876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=3.4e-08  Score=63.10  Aligned_cols=39  Identities=26%  Similarity=0.335  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2epw_A            7 GTGEKPCKCTECGKAFCWKSQLIMHQRT--HVDDKHSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSSHHHHHHHHH--CCSCCCSCCCCC
T ss_pred             CCCCCCeeCCCCCCccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88876

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.56  E-value=3.1e-08  Score=63.36  Aligned_cols=39  Identities=31%  Similarity=0.490  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ely_A            7 GTGEKPFKCVECGKGFSRRSALNVHHKL--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSBCCSSSCCCBSSTTHHHHHHHH--HSCCSSCSCCCC
T ss_pred             CCCCCCcccCccCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=3.8e-08  Score=62.94  Aligned_cols=39  Identities=23%  Similarity=0.355  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2en6_A            7 GSGEKPYGCNECGKTFSQKSILSAHQRT--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSCCEEETTTTEEESSHHHHHHHHHH--HSSCCCSSSCCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88876

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=4.6e-08  Score=62.51  Aligned_cols=39  Identities=26%  Similarity=0.411  Sum_probs=35.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ep0_A            7 GTGEKPYKCDVCHKSFRYGSSLTVHQRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             STTCCSEECSSSCCEESSHHHHHHHHTT--TSSSCCCSCCCC
T ss_pred             CCCCCCeeCcccCcccCChHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.56  E-value=3.3e-08  Score=63.28  Aligned_cols=39  Identities=26%  Similarity=0.345  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         7 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2em8_A            7 GSGEKPYKCVECGKGYKRRLDLDFHQRV--HTGEKLSGPSSG   46 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHHHH--HHCCCCCCSCCC
T ss_pred             CCCCCCeECcccCchhCCHHHHHHHHHH--HcCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 88877

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=1.8e-08  Score=70.00  Aligned_cols=59  Identities=20%  Similarity=0.282  Sum_probs=42.6

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCccc-cccccc
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCN-LCMNIF   88 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~-~C~k~F   88 (342)
                      .+++||+|+.|++.|. +..|..|+++   +++++                      |            .|+ .|+++|
T Consensus         6 C~~~~~~C~~C~k~f~-~~~L~~H~~~---~~~~p----------------------~------------~C~~~C~k~f   47 (66)
T 2eod_A            6 SGKRTQPCTYCTKEFV-FDTIQSHQYQ---CPRLP----------------------V------------ACPNQCGVGT   47 (66)
T ss_dssp             CCCCEEECSSSCCEEE-HHHHHHHHHH---CSSSE----------------------E------------ECTTCCSCCE
T ss_pred             CCCCCeeccccCCccC-HHHHHHHHHH---cCCcC----------------------c------------cCCcccCccc
Confidence            5789999999999999 9999999876   22322                      2            245 566667


Q ss_pred             CChhhHHHHHhhcCCCCC
Q 019380           89 DSPSSLIKHKEACSLSAP  106 (342)
Q Consensus        89 ~~~~~L~~H~~~h~~~~~  106 (342)
                      ..++.|..|+++|....+
T Consensus        48 ~~~~~L~~H~~~hc~~~~   65 (66)
T 2eod_A           48 VAREDLPGHLKDSCNTAL   65 (66)
T ss_dssp             EETTTHHHHHHTTSSSCC
T ss_pred             ccHHHHHHHHHhhcccCc
Confidence            777777777777665443

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=4.5e-08  Score=62.55  Aligned_cols=39  Identities=23%  Similarity=0.463  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2en1_A            7 GSGEKPFKCEECGKRFTQNSQLHSHQRV--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEEETTTTEEESSHHHHHHHGGG--GSCCCCSCCCCC
T ss_pred             CCCCCCeeCCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88876

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=98.55  E-value=4.3e-08  Score=65.65  Aligned_cols=38  Identities=21%  Similarity=0.168  Sum_probs=34.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDE  117 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~~  117 (342)
                      .|+.|++.|...+.|..|+++|++++++.|+.|+....
T Consensus         3 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~C~~C~~~f~   40 (57)
T 1bbo_A            3 ICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFK   40 (57)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHTSSCCCEECSSSSCEES
T ss_pred             cCCCCcCcCCCHHHHHHHHHhcCCCCCccCCCCCchhc
Confidence            47899999999999999999999999999999987654

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=3.5e-08  Score=63.09  Aligned_cols=39  Identities=28%  Similarity=0.475  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.+|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~c   46 (46)
T 2emh_A            7 GTGERPYICTVCGKAFTDRSNLIKHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSCCCSEECTTTCCEESSHHHHHHHHHH--HHCSSCSSSCCC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 88876

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.55  E-value=4.3e-08  Score=62.64  Aligned_cols=39  Identities=23%  Similarity=0.312  Sum_probs=35.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2yso_A            7 GSREKSHQCRECGEIFFQYVSLIEHQVL--HMGQKNSGPSSG   46 (46)
T ss_dssp             SSCCCCEECTTTCCEESSHHHHHHHHHH--HSCCSCCCTTCC
T ss_pred             cCCCCCEEccccChhhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4688999999999999999999999999  888887 88876

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.55  E-value=3.5e-08  Score=63.09  Aligned_cols=39  Identities=23%  Similarity=0.305  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2emp_A            7 GTGVKPYMCNECGKAFSVYSSLTTHQVI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESCHHHHHHHHHH--HHCCSCCSCCCC
T ss_pred             cCCCcCeECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88876

>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*

Probab=98.52  E-value=2.3e-08  Score=101.34  Aligned_cols=135  Identities=19%  Similarity=0.229  Sum_probs=93.2

Q ss_pred             ceecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcCC
Q 019380          126 AVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGE  205 (342)
Q Consensus       126 ~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~~~~  205 (342)
                      +|+||+||||+..... .+ ..+.+++..+...+  ++.|                .      .+.++++.|..|+    
T Consensus         1 ~vv~D~ETtGl~~~~d-~i-~~iqi~~~~~~~~~--~~~p----------------~------~i~~~l~~L~~~l----   50 (698)
T 1x9m_A            1 MIVSDIEANALLESVT-KF-HCGVIYDYSTAEYV--SYRP----------------S------DFGAYLDALEAEV----   50 (698)
T ss_dssp             CEEEEEEESSCGGGCC-CE-EEEEEEETTTTEEE--EECG----------------G------GHHHHHHHHHHHH----
T ss_pred             CEEEEcCCCCcCCCCC-EE-EEEEEEecCCCcEE--EECh----------------H------HHHHHHHHHHHHH----
Confidence            5899999999864322 23 55666554332222  1111                1      2345678888888    


Q ss_pred             CccccccCCCCCeEEEeeCc-hhhhhhcc----------ccCCCcceeeccccccccccCCCCccHHHHHHHHh------
Q 019380          206 STGRLMLDDGKARLLVGHGL-EHDLDSLR----------MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYL------  268 (342)
Q Consensus       206 ~~~~~~~~~~~~~~lvgh~~-~~D~~~l~----------~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~------  268 (342)
                              . .+.++|+||+ .||+.+|.          +..+...++||+.++..+.+...+++|+.|+..||      
T Consensus        51 --------~-~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~l~~~~~~DTmlaayLL~p~~~~~~L~~La~~~L~~sL~~  121 (698)
T 1x9m_A           51 --------A-RGGLIVFHNGHKYDVPALTKLAKLQLNREFHLPRENCIDTLVLSRLIHSNLKDTDMGLLRSGKLPGALEA  121 (698)
T ss_dssp             --------H-TTCCEEESSTTTTHHHHHHHHHHHHHCCCCCCCGGGEEEHHHHHHHHTTTSCCCTTTTSCGGGSCSCCCH
T ss_pred             --------h-cCCeEEEcCChHHHHHHHHHhhhhcccCCccCCCCcchhHHHHHHHhCCCCCCCCHHHHHHHHcccchhh
Confidence                    2 4578999999 99999995          22332468999999999988777888988888886      


Q ss_pred             -CCcC-----C-----------CC----------------CCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          269 -GYDI-----Q-----------SG----------------VHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       269 -~~~~-----~-----------~~----------------~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                       |...     .           .+                .|.|..||.+|++||..+..+..+
T Consensus       122 ~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L~~~L~~  185 (698)
T 1x9m_A          122 WGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKLLSDKHY  185 (698)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHHHTCTTT
T ss_pred             hcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             3211     0           01                356889999999999999987644

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=6.2e-08  Score=61.89  Aligned_cols=39  Identities=26%  Similarity=0.481  Sum_probs=35.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.+|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~~   46 (46)
T 2ep3_A            7 GTGEKPYRCAECGKAFTDRSNLFTHQKI--HTGEKPSGPSSG   46 (46)
T ss_dssp             SSCCCSEECSSSCCEESSHHHHHHHHTT--TTTSCCCCTTCC
T ss_pred             CCCCCCeECCCCCchhCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 88764

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=98.52  E-value=4.7e-08  Score=65.45  Aligned_cols=47  Identities=30%  Similarity=0.470  Sum_probs=40.4

Q ss_pred             ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCC
Q 019380           45 KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~  103 (342)
                      .|..|++.|.+...|..|+     .++|.            |+.|++.|...+.|..|++.|++
T Consensus         6 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~hh~   57 (57)
T 3uk3_C            6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYK------------CEFCEYAAAQKTSLRYHLERHHK   57 (57)
T ss_dssp             BCTTTCCBCSCHHHHHHHHHHHHCCCCEE------------CSSSSCEESSHHHHHHHHHHHC-
T ss_pred             cCCCCcchhCChHHHHHHHHHcCCCCCcC------------CCCCcchhCCHHHHHHHHHHhcC
Confidence            8999999999999999998     34444            58899999999999999999874

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.52  E-value=3.9e-08  Score=62.92  Aligned_cols=40  Identities=20%  Similarity=0.332  Sum_probs=35.8

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         8 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      ..++++||+|+.|++.|.++..|..|+++  |+++++ .|..|
T Consensus         6 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytt_A            6 SGEGEKPYQCSECGKSFSGSYRLTQHWIT--HTREKPSGPSSG   46 (46)
T ss_dssp             SCSCCCTTCCSSSCCCCSSHHHHHHHHTH--HHHCCCCSCCCC
T ss_pred             CCCCCCCeeCCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            34689999999999999999999999999  888877 88876

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=3.2e-08  Score=63.27  Aligned_cols=39  Identities=23%  Similarity=0.485  Sum_probs=35.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   46 (46)
T 2ytg_A            7 GTGEKPFKCGECGKSYNQRVHLTQHQRV--HTGEKPSGPSSG   46 (46)
T ss_dssp             CSSCCSEECTTTCCEESSSHHHHTTGGG--GSSCCSSCSCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88877

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.51  E-value=3.1e-08  Score=63.32  Aligned_cols=39  Identities=26%  Similarity=0.451  Sum_probs=35.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~C   46 (46)
T 2yu8_A            7 GTGEKPYKCNECGKVFTQNSHLARHRRV--HTGGKPSGPSSG   46 (46)
T ss_dssp             CCCCSSEECSSSCCEESSSHHHHHHTHH--HHSCCCSCSCCC
T ss_pred             CCCCCCeECCcCCchhCCHHHHHHHHHh--cCCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 88876

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.49  E-value=8.7e-08  Score=61.23  Aligned_cols=39  Identities=28%  Similarity=0.529  Sum_probs=35.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..|
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~~   46 (46)
T 2em2_A            7 GSGEKPFKCKECGKAFRQNIHLASHLRI--HTGEKPSGPSSG   46 (46)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHHH--HCCCCSSCSSCC
T ss_pred             CCCCCCEECCcCCchhCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 88764

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=98.49  E-value=5.7e-08  Score=71.25  Aligned_cols=53  Identities=26%  Similarity=0.564  Sum_probs=48.6

Q ss_pred             CCCCCccccc--ccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc
Q 019380            9 KRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (342)
Q Consensus         9 ~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (342)
                      .+++++|+|+  .|++.|.+...|..|+++  |+++++ .|..|++.|.+.+.|..|+
T Consensus        30 h~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   85 (89)
T 2wbs_A           30 HTGEKPYHCDWDGCGWKFARSDELTRHYRK--HTGHRPFQCQKCDRAFSRSDHLALHM   85 (89)
T ss_dssp             SCSSCCEECCSTTTCCEESSHHHHHHHHHH--HHCCCCEECSSSSCEESSHHHHHHHG
T ss_pred             cCCCCCcCCCCCCCCCccCCHHHHHHHHHH--cCCCCCccCCCCCcccCCHHHHHHHH
Confidence            3578899997  699999999999999999  888877 9999999999999999996

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=98.47  E-value=2.5e-08  Score=68.55  Aligned_cols=49  Identities=18%  Similarity=0.348  Sum_probs=42.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhh
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREH   62 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H   62 (342)
                      .++++||+|+.|++.|.....|.   ++  |+++++ .|..|++.|....++..+
T Consensus         9 H~~~k~~~C~~C~k~F~~~~~l~---~~--H~~~k~~~C~~C~k~f~~~~~~~~~   58 (62)
T 1vd4_A            9 STNRASFKCPVCSSTFTDLEANQ---LF--DPMTGTFRCTFCHTEVEEDESAMPK   58 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHHH---HE--ETTTTEEBCSSSCCBCEECTTCSCC
T ss_pred             cCCCCCccCCCCCchhccHHHhH---hh--cCCCCCEECCCCCCccccCcccccc
Confidence            46899999999999999988886   67  888887 999999999888876654

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.45  E-value=1.5e-07  Score=58.66  Aligned_cols=37  Identities=22%  Similarity=0.539  Sum_probs=33.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   42 (42)
T 2yte_A            5 SSGEKPYSCAECKETFSDNNRLVQHQKM--HTVKSGPSSG   42 (42)
T ss_dssp             SCSCCSCBCTTTCCBCSSHHHHHHHHHH--TSCCSSCCCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHH--hCCCCCCCCC
Confidence            3688999999999999999999999999  988876 663

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=98.45  E-value=1.2e-07  Score=71.12  Aligned_cols=52  Identities=29%  Similarity=0.600  Sum_probs=47.9

Q ss_pred             CCCCccccc--ccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc
Q 019380           10 RSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (342)
Q Consensus        10 ~~~~~~~C~--~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (342)
                      +++++|+|+  .|++.|.....|..|+++  |+++++ .|..|++.|.....|..|+
T Consensus        41 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~~~~~~C~~C~~~f~~~~~l~~H~   95 (100)
T 2ebt_A           41 TGEKPYKCTWEGCDWRFARSDELTRHYRK--HTGAKPFQCGVCNRSFSRSDHLALHM   95 (100)
T ss_dssp             SCCCCEECCSSSCCCEESSHHHHHHHHHH--HTSCCSCBCSSSCCBCSSHHHHHHHH
T ss_pred             CCCCCeeCCCCCCCCccCCHHHHHHHHHH--hCCCCCeECCCCcCccCCHHHHHHHH
Confidence            467899996  699999999999999999  888877 9999999999999999996

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.45  E-value=1.3e-07  Score=59.51  Aligned_cols=38  Identities=13%  Similarity=0.227  Sum_probs=34.2

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         8 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      ..++++||+|+.|++.|..+..|..|+++  |+++++ .|.
T Consensus         4 ~h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   42 (43)
T 2yrm_A            4 GSSGNGAFFCNECDCRFSEEASLKRHTLQ--THSDKSGPSS   42 (43)
T ss_dssp             CCSSSCCBCCSSSCCCBSSHHHHHHHHHH--HTCTTCSSSC
T ss_pred             CcCCCCCEECCCCCCeeCChHHHHHHHHh--hCCCCCccCC
Confidence            35689999999999999999999999999  888877 775

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.45  E-value=2.3e-07  Score=64.41  Aligned_cols=43  Identities=26%  Similarity=0.425  Sum_probs=35.8

Q ss_pred             CCCCCCCCCCcccccc--cccccCCHHHHHHHH-hhhccCCCCC-cccc
Q 019380            4 EAELPKRSTARHKCVA--CYKQFKRKDHLIEHM-KISYHSVHQP-KCAV   48 (342)
Q Consensus         4 ~~~~~~~~~~~~~C~~--C~k~f~~~~~L~~H~-~~~~H~~~~~-~C~~   48 (342)
                      +...--+++|||+|+.  |++.|.++++|.+|+ ++  |++++| .|..
T Consensus        17 ~~~~~~sGEKPYkC~~~~CgKaFsr~s~L~~H~rri--HTgEKP~~~~~   63 (73)
T 1x3c_A           17 EFPTRYSPYRPYRCVHQGCFAAFTIQQNLILHYQAV--HKSDLPAFSAE   63 (73)
T ss_dssp             CCSSSSCSSCSCBCCSTTCCCBCSSHHHHHHHHHHH--SSSCCCCCCCS
T ss_pred             cccccccCCCCeECCCCCcChhHcCHHHHHHHhhhh--CCCCCCccccc
Confidence            3444567999999965  999999999999998 68  999988 6644

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=98.42  E-value=1.6e-07  Score=58.61  Aligned_cols=37  Identities=30%  Similarity=0.536  Sum_probs=33.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|+
T Consensus         5 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   42 (42)
T 2el5_A            5 SSGENPYECSECGKAFNRKDQLISHQRT--HAGESGPSSG   42 (42)
T ss_dssp             SSSCCSEECSSSCCEESSHHHHHHHHGG--GCCCCSCCCC
T ss_pred             CCCCCCccCCCcChhhCCHHHHHHHHHh--cCCCCCCCCC
Confidence            4688999999999999999999999999  888877 663

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.8e-07  Score=58.04  Aligned_cols=36  Identities=28%  Similarity=0.481  Sum_probs=32.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C   46 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|
T Consensus         5 h~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C   41 (41)
T 2ept_A            5 SSGQRVYECQECGKSFRQKGSLTLHERI--HTGSGPSSG   41 (41)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHGGG--CCCCSCSCC
T ss_pred             cCCCCCeECCCCCCCcCCHHHHHHHHHH--hCCCCCcCC
Confidence            4689999999999999999999999999  988876 55

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.41  E-value=2.2e-07  Score=59.25  Aligned_cols=38  Identities=29%  Similarity=0.504  Sum_probs=34.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2enf_A            7 GTGEKPYKCNECGKVFTQNSHLVRHRGI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSCBCSSSCCBCSSHHHHHHHHTT--TTTSSCCCCSC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHh--hCCCCCCCCCC
Confidence            4689999999999999999999999999  988877 7763

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.41  E-value=1.6e-07  Score=57.68  Aligned_cols=33  Identities=27%  Similarity=0.369  Sum_probs=29.8

Q ss_pred             CCCCCCcccccc--cccccCCHHHHHHHHhhhccCCC
Q 019380            8 PKRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus         8 ~~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      +.+++|||+|+.  |++.|.+++.|..|+++  |++.
T Consensus         3 ~~~gekp~~C~~~~C~k~F~~~~~L~~H~r~--Htg~   37 (38)
T 2eln_A            3 SGSSGILLKCPTDGCDYSTPDKYKLQAHLKV--HTAL   37 (38)
T ss_dssp             CSSCCCCEECSSSSCCCEESCHHHHHHHHHH--HSCC
T ss_pred             CCCCCCCCCCCCCCCCCccCCHHHHHHHHHh--cCCC
Confidence            457899999986  99999999999999999  8865

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=2e-07  Score=59.56  Aligned_cols=38  Identities=29%  Similarity=0.532  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eon_A            7 GTGEKPYKCQVCGKAFRVSSHLVQHHSV--HSGERPSGPSS   45 (46)
T ss_dssp             CSSCCSCBCSSSCCBCSSHHHHHHHTTT--TTSCCSCTTSC
T ss_pred             CCCCcccCCCCCCcccCcHHHHHHHHHh--cCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 7753

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=1.9e-07  Score=59.62  Aligned_cols=38  Identities=32%  Similarity=0.536  Sum_probs=34.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2ytp_A            7 GTGERHYECSECGKAFARKSTLIMHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTT--TSCCCCCSSCC
T ss_pred             cCCCCCeECCcCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 7753

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.40  E-value=2.5e-07  Score=58.98  Aligned_cols=38  Identities=26%  Similarity=0.480  Sum_probs=34.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2em6_A            7 GMGEKCYKCDVCGKEFSQSSHLQTHQRV--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCCBCSSSCCBCSSHHHHHHHHTT--TSSSCCCCTTC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 7753

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=98.39  E-value=2e-07  Score=59.48  Aligned_cols=38  Identities=24%  Similarity=0.459  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2emj_A            7 GTGEKPFECAECGKSFSISSQLATHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCSEECSSSSCEESSHHHHHHHHHH--HTTSCSSSSCC
T ss_pred             CCCCCCEECCCCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 7763

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=2.3e-07  Score=59.15  Aligned_cols=38  Identities=29%  Similarity=0.470  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.+
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yti_A            7 GTGEKPYKCNECGKVFTQNSHLARHRGI--HTGEKPSGPSS   45 (46)
T ss_dssp             CSCCCTTCCSSSCCCCSSHHHHHHHHTT--TSCSCCSSTTC
T ss_pred             CCCCcCeECCCCCcccCChhHHHHHhHh--cCCCCCCCCCC
Confidence            4689999999999999999999999999  988877 7753

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=2.2e-07  Score=59.21  Aligned_cols=38  Identities=26%  Similarity=0.504  Sum_probs=34.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2ytf_A            7 GTGEKPFECSECQKAFNTKSNLIVHQRT--HTGEKPSGPSS   45 (46)
T ss_dssp             SCCCCSEECSSSCCEESSHHHHHHHHHT--SCSSSSSCCCC
T ss_pred             CCCCCCcCCCCCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            4689999999999999999999999999  988887 7753

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.39  E-value=2e-07  Score=59.43  Aligned_cols=38  Identities=29%  Similarity=0.483  Sum_probs=34.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2em4_A            7 GTGQRPYECIECGKAFKTKSSLICHRRS--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSEECSSSCCEESSHHHHHHHHHH--HSSSSCCCCCC
T ss_pred             cCCCcCcCCCCCCCccCCHHHHHHHHHh--cCCCCCCCCCC
Confidence            4689999999999999999999999999  888887 7753

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=1.9e-07  Score=59.25  Aligned_cols=37  Identities=24%  Similarity=0.540  Sum_probs=33.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~   44 (45)
T 2epu_A            7 GTGQKPFECTHCGKSFRAKGNLVTHQRI--HTGEKSGPSS   44 (45)
T ss_dssp             CCSCCSEEETTTTEEESSHHHHHHHHTT--TSSCCCCCSC
T ss_pred             CCCCcCccCCCCCCccCChHHHHHHHHH--hCCCCCCCCC
Confidence            4689999999999999999999999999  988877 775

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=2.7e-07  Score=58.82  Aligned_cols=37  Identities=22%  Similarity=0.422  Sum_probs=33.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2eoh_A            7 GSGKKPYECKECRKTFIQIGHLNQHKRV--HTGERSSGPS   44 (46)
T ss_dssp             CCCSCSCCCSSSCCCCSSHHHHHHHHHH--CSSCCSCSTT
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            4688999999999999999999999999  988877 775

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.39  E-value=2.6e-07  Score=58.88  Aligned_cols=38  Identities=32%  Similarity=0.479  Sum_probs=33.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~~   45 (46)
T 2emg_A            7 GTGENPFICSECGKVFTHKTNLIIHQKI--HTGERPSGPSS   45 (46)
T ss_dssp             CCSCCSCBCTTTCCBCSSHHHHHHHHTT--TSCCCCSCSCC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            4688999999999999999999999999  988877 7753

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=2.4e-07  Score=58.98  Aligned_cols=38  Identities=29%  Similarity=0.456  Sum_probs=34.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~p~~C~~   45 (46)
T 2yts_A            7 GTGEKPYICNECGKSFIQKSHLNRHRRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCSCCSEECSSSCCEESSHHHHHHHGGG--TSSCCSSCCCC
T ss_pred             CCCCcCEECCCCChhhCChHHHHHHHHh--cCCCCCcCCCC
Confidence            4689999999999999999999999999  988887 7763

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=2.6e-07  Score=58.97  Aligned_cols=38  Identities=26%  Similarity=0.466  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2en9_A            7 GAGKKLFKCNECKKTFTQSSSLTVHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCSSCCCBCTTTCCBCSSHHHHHHHHHH--HTSSCCCSCCC
T ss_pred             CCCCCCEECCccCcccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            4688999999999999999999999999  888877 7753

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=2.8e-07  Score=58.80  Aligned_cols=38  Identities=24%  Similarity=0.520  Sum_probs=33.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yth_A            7 GSGEKPFQCEECGKRFTQNSHLHSHQRV--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSSSBCCSSSCCCBSSHHHHHHHGGG--GTTCCCSSCCC
T ss_pred             CCCCcCCCCCCCCcccCCHHHHHHHHHh--cCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 7753

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.38  E-value=2.6e-07  Score=58.99  Aligned_cols=37  Identities=27%  Similarity=0.561  Sum_probs=33.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2eom_A            7 GHGERGHRCSDCGKFFLQASNFIQHRRI--HTGEKPSGPS   44 (46)
T ss_dssp             CCCCSSCCCSSSCCCCSSHHHHHHHHHH--HSSCCCSSCC
T ss_pred             CCCCCCcCCCCCCCeeCChHHHHHHHHH--hCCCCCCCCC
Confidence            4689999999999999999999999999  888877 775

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=98.38  E-value=2.3e-07  Score=57.78  Aligned_cols=36  Identities=22%  Similarity=0.335  Sum_probs=32.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C   46 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|
T Consensus         6 H~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~~k~~~C   42 (42)
T 2epc_A            6 SGGETPYLCGQCGKSFTQRGSLAVHQRS--CSQSGPSSG   42 (42)
T ss_dssp             CCSSCCEECSSSCCEESSHHHHHHHHHH--TTCCCCCCC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHhhh--cCCCCCCCC
Confidence            4688999999999999999999999999  988876 55

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=2.7e-07  Score=58.74  Aligned_cols=38  Identities=26%  Similarity=0.446  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2ep1_A            7 GTGEKPYECSDCGKSFIKKSQLHVHQRI--HTGENPSGPSS   45 (46)
T ss_dssp             CSSCCSSCCSSSCCCCSSHHHHHHHHGG--GSSSCCCSSSC
T ss_pred             CCCCCCcCCCCCCchhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 7753

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.38  E-value=2.4e-07  Score=59.07  Aligned_cols=38  Identities=21%  Similarity=0.436  Sum_probs=33.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eq2_A            7 GTGGKPYQCNECGKAFSQTSKLARHQRV--HTGEKPSGPSS   45 (46)
T ss_dssp             SSSSCSSSCCSSCCCCSSHHHHHHHGGG--GCCCCCCCCCC
T ss_pred             cCCCCCeECCCCCcccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 7753

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.37  E-value=2.6e-07  Score=58.87  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=33.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2emi_A            7 GTGERHYECSECGKAFIQKSTLSMHQRI--HRGEKPSGPSS   45 (46)
T ss_dssp             CSSCCCEECSSSCCEESSHHHHHHHHGG--GCSCCCCSCCC
T ss_pred             cCCCCCCCCCCCCcccCCHHHHHHHHhH--hCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 7753

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.37  E-value=2.3e-07  Score=58.48  Aligned_cols=37  Identities=32%  Similarity=0.530  Sum_probs=33.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2eoj_A            7 GTGENPYECCECGKVFSRKDQLVSHQKT--HSGQSGPSSG   44 (44)
T ss_dssp             SSSCCSCEETTTTEECSSHHHHHHHHTT--SSSSCSCCCC
T ss_pred             cCCCcCeeCCCCCCccCCHHHHHHHHHH--cCCCCCCCCC
Confidence            4689999999999999999999999999  888876 663

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2.3e-07  Score=59.07  Aligned_cols=38  Identities=26%  Similarity=0.399  Sum_probs=34.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eow_A            7 GTGEKPYKCNECGKAFRARSSLAIHQAT--HSGEKPSGPSS   45 (46)
T ss_dssp             SCCCCCEECTTSCCEESSHHHHHHHHHH--HCCCSCSCTTC
T ss_pred             CCCCCCeeccccCChhcCHHHHHHHHHH--cCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 7753

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2.9e-07  Score=59.17  Aligned_cols=39  Identities=26%  Similarity=0.389  Sum_probs=35.5

Q ss_pred             CCCCCccccc--ccccccCCHHHHHHHHhhhccCCCCC-ccccC
Q 019380            9 KRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP-KCAVC   49 (342)
Q Consensus         9 ~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C   49 (342)
                      .++++||+|.  .|++.|..+..|..|+++  |+++++ +|..|
T Consensus         7 H~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~C   48 (48)
T 2ent_A            7 GTGEKPFACTWPGCGWRFSRSDELSRHRRS--HSGVKPSGPSSG   48 (48)
T ss_dssp             SCCCCCEECCSSSCCCEESSHHHHHHHHTT--SCCCCSCSSCCC
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHH--hCCCCCCCCCCC
Confidence            4689999998  899999999999999999  998887 88876

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.36  E-value=2.4e-07  Score=57.84  Aligned_cols=36  Identities=22%  Similarity=0.448  Sum_probs=32.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C   46 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   42 (42)
T 2eos_A            6 SGGEKPYPCEICGTRFRHLQTLKSHLRI--HTGSGPSSG   42 (42)
T ss_dssp             CSSSCCBCCSSSCCCBSSHHHHHHHTTT--TSCCSSTTC
T ss_pred             cCCCCCEECCCCCCccCCHHHHHHHHHh--cCCCCCCCC
Confidence            4688999999999999999999999999  888876 55

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2.5e-07  Score=59.00  Aligned_cols=37  Identities=24%  Similarity=0.479  Sum_probs=33.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.
T Consensus         7 h~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2enh_A            7 GTGEKPYECDVCRKAFSHHASLTQHQRV--HSGEKPSGPS   44 (46)
T ss_dssp             CCCSSSCBCTTTCCBCSSSHHHHHHGGG--SCCSCCCCCC
T ss_pred             cCCCCCcCCCCcCchhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            4689999999999999999999999999  988877 775

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2.9e-07  Score=57.94  Aligned_cols=37  Identities=22%  Similarity=0.424  Sum_probs=33.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2eof_A            7 GTGEKPYECNECQKAFNTKSNLMVHQRT--HTGESGPSSG   44 (44)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHH--TTTSSCSCCC
T ss_pred             CCCCCCeECCCCCcccCCHhHHHHHHHH--hCCCCCCCCC
Confidence            4689999999999999999999999999  888876 663

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.36  E-value=2.6e-07  Score=58.89  Aligned_cols=38  Identities=29%  Similarity=0.517  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.+
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~~   45 (46)
T 2em3_A            7 GTGEKPYECKVCSKAFTQKAHLAQHQKT--HTGEKPSGPSS   45 (46)
T ss_dssp             CSSCCSEECSSSCCEESSHHHHHHHHHH--HCCCCCCCSCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 7753

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=2.9e-07  Score=57.94  Aligned_cols=37  Identities=24%  Similarity=0.369  Sum_probs=33.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|+
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2en7_A            7 GTGMKPYVCNECGKAFRSKSYLIIHTRT--HTGESGPSSG   44 (44)
T ss_dssp             SSSSSSSCCTTTCCCCSSHHHHHHHHTT--TCCSSSSCCC
T ss_pred             CCCCcCeECCCCCCccCCHHHHHHHhhh--cCCCCCCCCC
Confidence            4688999999999999999999999999  888876 663

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=3.1e-07  Score=58.46  Aligned_cols=38  Identities=26%  Similarity=0.488  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2yrj_A            7 GTGEKPYRCGECGKAFAQKANLTQHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCCCCEECSSSCCEESSHHHHHHHHTT--TSSCCSSCSCC
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 7753

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.35  E-value=3.1e-07  Score=58.55  Aligned_cols=38  Identities=26%  Similarity=0.440  Sum_probs=34.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|..
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~~   45 (46)
T 2eq1_A            7 GTGEKPYKCNECGKAFRAHSNLTTHQVI--HTGEKPSGPSS   45 (46)
T ss_dssp             CCCSCCCCCTTTTCCCSSHHHHHHHHTT--TCCSCCSSCCC
T ss_pred             cCCCCCeECCcCChhhCCHHHHHHHHHH--hCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 7753

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=98.35  E-value=2.6e-07  Score=62.44  Aligned_cols=48  Identities=31%  Similarity=0.588  Sum_probs=39.9

Q ss_pred             ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCcccccccccCChhhHHHHH-hhcCCC
Q 019380           45 KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHK-EACSLS  104 (342)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~-~~h~~~  104 (342)
                      .|..|++.|.+...|..|+     .++|            .|+.|++.|...+.|..|+ +.|.++
T Consensus         4 ~C~~C~~~f~~~~~l~~H~~~h~~~~~~------------~C~~C~~~f~~~~~l~~H~~~~H~~~   57 (60)
T 2adr_A            4 VCEVCTRAFARQEHLKRHYRSHTNEKPY------------PCGLCNRAFTRRDLLIRHAQKIHSGN   57 (60)
T ss_dssp             CCTTTCCCBSCHHHHHHHHHTTTSSCSE------------ECTTTCCEESSHHHHHHHHTTTSCCS
T ss_pred             cCCCCccccCCHHHHHHHHHHhCCCCCc------------cCCCCCCccCCHHHHHHHHHHHcCCc
Confidence            8999999999999999998     2234            4688999999999999997 566644

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=98.35  E-value=3.5e-07  Score=54.47  Aligned_cols=34  Identities=21%  Similarity=0.437  Sum_probs=30.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~   44 (342)
                      .++++||+|+.|++.|..+..|..|+++  |++++|
T Consensus         2 H~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~~~   35 (35)
T 1srk_A            2 SSGKRPFVCRICLSAFTTKANCARHLKV--HTDTLS   35 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG--GTSCCC
T ss_pred             CCCCcCeeCCCCCcccCCHHHHHHHHHH--cCCCCC
Confidence            3689999999999999999999999999  887654

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=98.35  E-value=3.1e-08  Score=72.88  Aligned_cols=58  Identities=17%  Similarity=0.499  Sum_probs=49.5

Q ss_pred             ccccCccccCChhhhhhhc-----CCCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCCCCCCCCcccccc
Q 019380           45 KCAVCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAI  115 (342)
Q Consensus        45 ~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~  115 (342)
                      .|..|++.|.+...|..|+     .++|.            |+.|++.|...+.|..|++.|++ .++.|+.|+..
T Consensus         5 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~------------C~~C~k~f~~~~~L~~H~~~h~~-~~~~c~~C~~~   67 (88)
T 1llm_C            5 QCRICMRNFSRSDHLTTHIRTHTGEKPFA------------CDICGRKFARSDERKRHRDIQHI-LPILEDKVEEL   67 (88)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHHCCCCEE------------CTTTCCEESSHHHHHHHHHHHTH-HHHHHHHHHHH
T ss_pred             cCCCCCCccCCHHHHHHHHHHcCCCCCcc------------CCCCCCccCCHHHHHHHHHHhCC-CcchHHHHHHH
Confidence            8999999999999999998     34454            58899999999999999999984 67788877654

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.35  E-value=3.4e-07  Score=54.40  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=30.1

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCCC
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~   44 (342)
                      ++++||+|+.|++.|.++..|..|+++  |++++|
T Consensus         3 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--h~~~kp   35 (35)
T 2elx_A            3 SGSSGYVCALCLKKFVSSIRLRSHIRE--VHGAAQ   35 (35)
T ss_dssp             CCCCSEECSSSCCEESSHHHHHHHHHH--TSCTTC
T ss_pred             CCCCCeECCCCcchhCCHHHHHHHHHH--HcCCCC
Confidence            578999999999999999999999999  887654

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.34  E-value=1.6e-07  Score=65.03  Aligned_cols=36  Identities=19%  Similarity=0.299  Sum_probs=32.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCc-ccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFK-ISGAIDE  117 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~-~c~~~~~  117 (342)
                      .|+.|++.|. .+.|..|+++ .+++|+.|+ .|++...
T Consensus        12 ~C~~C~k~f~-~~~L~~H~~~-~~~~p~~C~~~C~k~f~   48 (66)
T 2eod_A           12 PCTYCTKEFV-FDTIQSHQYQ-CPRLPVACPNQCGVGTV   48 (66)
T ss_dssp             ECSSSCCEEE-HHHHHHHHHH-CSSSEEECTTCCSCCEE
T ss_pred             eccccCCccC-HHHHHHHHHH-cCCcCccCCcccCcccc
Confidence            4789999999 9999999999 999999999 9998643

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.34  E-value=3e-07  Score=58.60  Aligned_cols=37  Identities=27%  Similarity=0.354  Sum_probs=33.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2yto_A            7 GTGEKPYKCSDCGKAFTRKSGLHIHQQS--HTGERHSGPS   44 (46)
T ss_dssp             CCSCCCEECSSSCCEESSHHHHHHHHHH--HTCCCBTTTB
T ss_pred             cCCCCCEECcccCCccCCHhHHHHHHHH--cCCCCCCCCC
Confidence            4689999999999999999999999999  888877 775

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=98.34  E-value=1.3e-07  Score=66.74  Aligned_cols=61  Identities=20%  Similarity=0.498  Sum_probs=46.5

Q ss_pred             HHHHHHhhhccCCCCC-ccc--cCccccCChhhhhhhc-----CCCcccCCCCCcccCCcccccccccCChhhHHHHHhh
Q 019380           29 HLIEHMKISYHSVHQP-KCA--VCQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEA  100 (342)
Q Consensus        29 ~L~~H~~~~~H~~~~~-~C~--~C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~  100 (342)
                      .+..|.... |++.++ .|.  .|++.|.....|..|+     .++|.            |+.|++.|...+.|..|+++
T Consensus         5 ~~~~~~~~~-~~~~~~~~C~~~~C~k~f~~~~~l~~H~~~h~~~~~~~------------C~~C~~~f~~~~~l~~H~~~   71 (73)
T 1f2i_G            5 PMNNLLNYV-VPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQ------------CRICMRNFSRSDHLTTHIRT   71 (73)
T ss_dssp             ---CTTSCC-CCCCCCEECSSTTBCCEESSHHHHHHHHHHHHCCCCEE------------CTTTCCEESCHHHHHHHHTT
T ss_pred             Cccchhhcc-CCCCCccCCcCCCCCCccCCHHHHHHHHHhhCCCCCeE------------CCCCCchhCCHHHHHHHHHh
Confidence            344454432 777777 997  6999999999999998     33444            68899999999999999998


Q ss_pred             cC
Q 019380          101 CS  102 (342)
Q Consensus       101 h~  102 (342)
                      |.
T Consensus        72 Ht   73 (73)
T 1f2i_G           72 HT   73 (73)
T ss_dssp             CC
T ss_pred             cC
Confidence            74

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=2.5e-07  Score=58.32  Aligned_cols=37  Identities=19%  Similarity=0.467  Sum_probs=33.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2yu5_A            7 GAGENPFKCSKCDRVFTQRNYLVQHERT--HARKSGPSSG   44 (44)
T ss_dssp             CSCCCSEECSSSSCEESSSHHHHHHHHH--CCCCCSSCCC
T ss_pred             cCCCCCeECCCCCchhCCHHHHHHHhHh--cCCCCCCCCC
Confidence            4689999999999999999999999999  888876 663

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=2.8e-07  Score=58.78  Aligned_cols=37  Identities=22%  Similarity=0.388  Sum_probs=33.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (46)
T 2eoz_A            7 GTGEKPYSCNVCGKAFVLSAHLNQHLRV--HTQETLSGPS   44 (46)
T ss_dssp             CSSCCSEEETTTTEEESSHHHHHHHHHH--HSSCCSSSCC
T ss_pred             CCCCCCeECcccChhhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            4689999999999999999999999999  888877 775

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.33  E-value=2.6e-07  Score=57.58  Aligned_cols=36  Identities=28%  Similarity=0.541  Sum_probs=32.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C   46 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   42 (42)
T 2ytb_A            6 SGGEKPYRCDQCGKAFSQKGSLIVHIRV--HTGSGPSSG   42 (42)
T ss_dssp             CCSCCSBCCTTTTCCBSSHHHHHTTGGG--TSCCSCCCC
T ss_pred             cCCCCCeeCCCccchhCCHHHHHHHHHH--hCCCCCCCC
Confidence            4689999999999999999999999999  888876 55

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.33  E-value=3.8e-07  Score=57.47  Aligned_cols=37  Identities=27%  Similarity=0.566  Sum_probs=33.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2emb_A            7 GHTRKRYECSKCQATFNLRKHLIQHQKT--HAAKSGPSSG   44 (44)
T ss_dssp             CCCCSSEECTTTCCEESCHHHHHHHGGG--GCCCCCTTCC
T ss_pred             cCCCCCeECCCCCCccCCHHHHHHHHHH--cCCCCCcCCC
Confidence            4688999999999999999999999999  888877 663

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=4e-07  Score=57.49  Aligned_cols=36  Identities=25%  Similarity=0.320  Sum_probs=32.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C   46 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~k~~~~   43 (44)
T 2epv_A            7 GSGEKPYECNECGKAFIWKSLLIVHERT--HAGVSGPSS   43 (44)
T ss_dssp             CCCCCSEECSSSCCEESSHHHHHHHHGG--GSSCSCCCC
T ss_pred             cCCCcCeECCCCCcccCchHHHHHHHhH--hcCCCCCCC
Confidence            4689999999999999999999999999  888876 54

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.32  E-value=3.6e-07  Score=57.62  Aligned_cols=37  Identities=24%  Similarity=0.462  Sum_probs=33.1

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.
T Consensus         7 h~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (44)
T 2eou_A            7 GAAKTTSECQECGKIFRHSSLLIEHQAL--HAGESGPSSG   44 (44)
T ss_dssp             CSSSCCCCCTTTCCCCSSHHHHHHHHHH--HTTSCCCCCC
T ss_pred             CCCCcCeECCCCCcccCCHHHHHHHHHH--HCCCCCCCCC
Confidence            4688999999999999999999999999  888877 663

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=2.6e-07  Score=58.84  Aligned_cols=38  Identities=26%  Similarity=0.449  Sum_probs=33.8

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAV   48 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~   48 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.+
T Consensus         7 H~~~~~~~C~~C~k~f~~~~~L~~H~~~--H~~~kp~~C~~   45 (46)
T 2eor_A            7 GTGEKPYNCEECGKAFIHDSQLQEHQRI--HTGEKPSGPSS   45 (46)
T ss_dssp             SSCCCSEECTTTCCEESSHHHHHHHHHH--HHSCCCSSSTT
T ss_pred             cCCCcCccCCCCCCCcCCHHHHHHHHHh--cCCCCCCCCCC
Confidence            4689999999999999999999999999  888877 7753

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.32  E-value=2.2e-07  Score=57.98  Aligned_cols=36  Identities=28%  Similarity=0.450  Sum_probs=32.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C   46 (342)
                      .++++||+|+.|++.|.++..|..|+++  |+++++ .|
T Consensus         6 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~C   42 (42)
T 2en2_A            6 SGGEKPYKCETCGARFVQVAHLRAHVLI--HTGSGPSSG   42 (42)
T ss_dssp             CCSSCSEECTTTCCEESSHHHHHHHTHH--HHSCCSSCC
T ss_pred             cCCCCCEeCCCcChhhCCHHHHHHHHHH--cCCCCCCCC
Confidence            4689999999999999999999999999  888776 55

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=3.6e-07  Score=55.15  Aligned_cols=34  Identities=21%  Similarity=0.346  Sum_probs=30.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~   44 (342)
                      .++++||+|+.|++.|..+..|..|+++  |++++|
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--h~~~kp   37 (37)
T 2elo_A            4 GSSGRSYSCPVCEKSFSEDRLIKSHIKT--NHPEVS   37 (37)
T ss_dssp             CCCCCCCEETTTTEECSSHHHHHHHHHH--HCSSCC
T ss_pred             CCCCCCcCCCCCCCccCCHHHHHHHHHH--HcCCCC
Confidence            4688999999999999999999999999  887754

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.31  E-value=3.9e-07  Score=57.98  Aligned_cols=37  Identities=24%  Similarity=0.425  Sum_probs=33.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2eq3_A            7 GTGEKPYECNQCGKAFSVRSSLTTHQAI--HTGKKPSGPS   44 (46)
T ss_dssp             SCCCCSSEETTTTEECSSHHHHHHHHTT--SCCCCCCCSC
T ss_pred             CCCCCCeECCCCChhhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            4688999999999999999999999999  988877 775

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=3.1e-07  Score=58.54  Aligned_cols=37  Identities=24%  Similarity=0.424  Sum_probs=33.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCC-CCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSV-HQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~-~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |++ +++ .|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~~~~~~C~   45 (46)
T 2eoy_A            7 GQKEKCFKCNKCEKTFSCSKYLTQHERI--HTRGVKSGPSS   45 (46)
T ss_dssp             CCCSCCEECSSSCCEESSSHHHHHHHTT--CCSCCTTSSSC
T ss_pred             cCCCCCEECcCCCCcCCCHHHHHHHHHH--cCCCCCCCCCC
Confidence            4688999999999999999999999999  988 776 775

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.31  E-value=3.1e-08  Score=69.70  Aligned_cols=56  Identities=21%  Similarity=0.320  Sum_probs=45.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCccccCChhhhhhhc-----CCCcccCCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLSKSFESLREHL-----TGPLSKAHC   72 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f~~~~~l~~H~-----~~~~~C~~C   72 (342)
                      .++++||+|+.|++.|..+..|..        ...+.|..|++.|.....|..|+     .++|.|+.|
T Consensus        13 h~~~~~~~C~~C~k~f~~~~~l~~--------~~~~~C~~C~~~f~~~~~l~~H~~~H~~~~~~~C~~C   73 (73)
T 2ctu_A           13 HLGDRSQKCSKCGIIFIRRSTLSR--------RKTPMCEKCRKDSCQEAALNKDEGNESGKKTSGPSSG   73 (73)
T ss_dssp             CCCCSEEECSSSCCEEECCCCCCC--------SSSCCCHHHHHTCSCCCSSCCCSSCCCCCCCSSCCCC
T ss_pred             hCCCCCeeCCcccchhCCHHHhCc--------CCCCCCCCCChhhcCHHHHHHHHHhhcCCCCCCCCCC
Confidence            468899999999999998775554        23349999999999999999998     356777665

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=98.28  E-value=5.5e-07  Score=55.16  Aligned_cols=33  Identities=21%  Similarity=0.467  Sum_probs=30.7

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCCC
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~   44 (342)
                      ++++||+|+.|++.|..+..|..|+++  |+++++
T Consensus         2 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~   34 (39)
T 1njq_A            2 WPPRSYTCSFCKREFRSAQALGGHMNV--HRRDRA   34 (39)
T ss_dssp             CCSSSEECTTTCCEESSHHHHHHHHHT--TCCSCT
T ss_pred             CCCCceECCCCCcccCCHHHHHHHHHH--cCCCcc
Confidence            578999999999999999999999999  988876

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.28  E-value=3.1e-07  Score=58.55  Aligned_cols=37  Identities=30%  Similarity=0.555  Sum_probs=33.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.
T Consensus         7 H~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~k~~~C~   44 (46)
T 2emz_A            7 GSGERPFKCNECGKGFGRRSHLAGHLRL--HSREKSSGPS   44 (46)
T ss_dssp             SSCCCSCCCSSSCCCCSSHHHHHHHHHH--HHHTTCCCSC
T ss_pred             CCCCCCeECCCCCcccCCHHHHHHHHHH--hCCCCCCCCC
Confidence            4689999999999999999999999999  888776 775

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.27  E-value=4.4e-07  Score=58.50  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=32.3

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGA  114 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~  114 (342)
                      .|+.|++.|.....|.+|+++|++++++.|++|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C~k   48 (48)
T 2epr_A           14 ACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPSSG   48 (48)
T ss_dssp             EETTTTEEESSHHHHHHHGGGSCSCCCCCSCCCCC
T ss_pred             eCCCCCcccCCHHHHHHHHHhcCCCCCccCCCCCC
Confidence            36889999999999999999999999999999874

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.24  E-value=2.8e-07  Score=58.13  Aligned_cols=37  Identities=30%  Similarity=0.461  Sum_probs=32.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|+
T Consensus         7 H~~~~~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~   44 (44)
T 2eox_A            7 GTDSKSYNCNECGKAFTRIFHLTRHQKI--HTRKSGPSSG   44 (44)
T ss_dssp             CCCCCCEEETTTTEEESSSHHHHTTHHH--HCCCCCCSCC
T ss_pred             CCCCCCeECcccCcccCCHHHHHHHHHH--hCCCCCCCCC
Confidence            4688999999999999999999999999  888876 663

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.24  E-value=7.5e-07  Score=53.39  Aligned_cols=32  Identities=25%  Similarity=0.359  Sum_probs=29.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   35 (36)
T 2elv_A            4 GSSGLLYDCHICERKFKNELDRDRHMLV--HGDK   35 (36)
T ss_dssp             SCCCCCEECSSSCCEESSHHHHHHHHTT--TSTT
T ss_pred             CCCCCCeECCCCCCccCCHHHHHHHHHH--hcCC
Confidence            4688999999999999999999999999  8765

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=1e-06  Score=52.61  Aligned_cols=33  Identities=33%  Similarity=0.526  Sum_probs=29.8

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus         8 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      +.++++||+|+.|++.|..+..|..|+++  |+++
T Consensus         3 ~h~~~~~~~C~~C~k~f~~~~~l~~H~~~--H~~e   35 (36)
T 2elr_A            3 SGSSGKTHLCDMCGKKFKSKGTLKSHKLL--HTAD   35 (36)
T ss_dssp             CCCCCSSCBCTTTCCBCSSHHHHHHHHHH--HSSC
T ss_pred             CCCCCCCeecCcCCCCcCchHHHHHHHHH--hcCC
Confidence            35689999999999999999999999999  8765

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.22  E-value=1e-06  Score=56.00  Aligned_cols=33  Identities=21%  Similarity=0.350  Sum_probs=29.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|+++|..++.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoq_A           14 KCDICGKSFCGRSRLNRHSMVHTAEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHHHTTCCCSSSCCCC
T ss_pred             CCCcCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            468899999999999999999999999999875

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.22  E-value=9.9e-07  Score=52.82  Aligned_cols=32  Identities=31%  Similarity=0.436  Sum_probs=29.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   35 (36)
T 2elq_A            4 GSSGKPFKCSLCEYATRSKSNLKAHMNR--HSTE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESCHHHHHHHHHH--SSTT
T ss_pred             CCCCCCccCCCCCchhCCHHHHHHHHHH--hccC
Confidence            4688999999999999999999999999  8765

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.21  E-value=1.1e-06  Score=60.91  Aligned_cols=40  Identities=23%  Similarity=0.302  Sum_probs=34.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQ   50 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~   50 (342)
                      .++++||+|..|+|.|.++..|..|+++  |++....|..+.
T Consensus         8 ~~~ekpy~C~~CgK~F~~~s~L~~H~r~--Htg~~~~~~~~~   47 (66)
T 2epp_A            8 LREAGILPCGLCGKVFTDANRLRQHEAQ--HGVTSLQLGYID   47 (66)
T ss_dssp             CCCCCCCCCTTTCCCCSCHHHHHHHHHH--HTTTSCCCCSCC
T ss_pred             CCCccCcCCCCCCCccCCHHHHHhhhhh--hCCCcccccccc
Confidence            4689999999999999999999999999  888766565554

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=98.21  E-value=4.3e-07  Score=65.67  Aligned_cols=50  Identities=24%  Similarity=0.469  Sum_probs=45.9

Q ss_pred             CCCCcccccc--cccccCCHHHHHHHHhhhccCCCCCcccc---CccccCChhhhhhhc
Q 019380           10 RSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQPKCAV---CQKLSKSFESLREHL   63 (342)
Q Consensus        10 ~~~~~~~C~~--C~k~f~~~~~L~~H~~~~~H~~~~~~C~~---C~~~f~~~~~l~~H~   63 (342)
                      ++++||+|+.  |++.|.++..|..|+++  |++  +.|..   |++.|...+.|..|+
T Consensus        27 ~~~~~~~C~~~~C~~~f~~~~~l~~H~~~--h~~--~~C~~~~~C~~~f~~~~~l~~H~   81 (85)
T 2j7j_A           27 TQQLPYECPHEGCDKRFSLPSRLKRHEKV--HAG--YPCKKDDSCSFVGKTWTLYLKHV   81 (85)
T ss_dssp             HTTCCEECCSTTCCCEESSHHHHHHHHHH--HHS--EECCSCSSCCCEESSHHHHHHHH
T ss_pred             CCCCCeeCCCCCCcCccCCHHHHHHHHHH--hCC--CCCCCCCCCCCccCCHHHHHHHH
Confidence            3678999988  99999999999999999  777  78988   999999999999985

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=98.21  E-value=1e-06  Score=56.03  Aligned_cols=33  Identities=21%  Similarity=0.393  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|.+|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emk_A           14 ECKECGKAFSQTTHLIQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             BCSSSCCBCSCHHHHHHHHHHHSSCCCSSCCCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            368899999999999999999999999999875

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.21  E-value=3.5e-07  Score=58.25  Aligned_cols=37  Identities=19%  Similarity=0.389  Sum_probs=32.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|.
T Consensus         7 H~~~k~~~C~~C~k~F~~~~~L~~H~~~--H~~~~~~~C~   44 (46)
T 2en3_A            7 GTGEKPFQCKECGMNFSWSCSLFKHLRS--HERTDPSGPS   44 (46)
T ss_dssp             SCCCCSEECSSSCCEESSSHHHHHHHHH--HHHSCCSSCS
T ss_pred             cCCCCCeeCcccChhhCCHHHHHHHHHH--hCCCCCCCCC
Confidence            4689999999999999999999999999  887776 764

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.20  E-value=8.7e-07  Score=56.36  Aligned_cols=33  Identities=21%  Similarity=0.348  Sum_probs=29.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ep2_A           14 ECSICGKSFTKKSQLHVHQQIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHTTSSCCSCCSCCC
T ss_pred             CCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            368899999999999999999999999999875

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=98.20  E-value=8.2e-07  Score=52.33  Aligned_cols=30  Identities=33%  Similarity=0.703  Sum_probs=27.9

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCCCC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~   44 (342)
                      +||+|+.|++.|..+..|..|+++  |+++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~~~--H~~~~~   30 (33)
T 1rim_A            1 YKFACPECPKRFMRSDHLSKHITL--HELLGE   30 (33)
T ss_dssp             CCCCCSSSCCCCSSHHHHHHHHHH--HTTTCC
T ss_pred             CcccCCCCCchhCCHHHHHHHHHH--hCCCCC
Confidence            689999999999999999999999  888765

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.19  E-value=9.7e-07  Score=56.13  Aligned_cols=33  Identities=27%  Similarity=0.367  Sum_probs=29.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|++|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ytj_A           14 ICAECGKAFTIRSNLIKHQKIHTKQKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHTSCCCCSSCSCC
T ss_pred             ECCCCChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367899999999999999999999999999875

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=98.19  E-value=9.6e-07  Score=56.19  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|.+|+++|.+++++.|++|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ely_A           14 KCVECGKGFSRRSALNVHHKLHTGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCBSSTTHHHHHHHHHSCCSSCSCCCC
T ss_pred             ccCccCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            368899999999999999999999999999876

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.19  E-value=1e-06  Score=56.04  Aligned_cols=33  Identities=12%  Similarity=0.088  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2elz_A           14 KCEDCGKGYNRRLNLDMHQRVHMGEKTSGPSSG   46 (46)
T ss_dssp             BCSSSCCBCSSHHHHHHHGGGGGSCCCCCSCCC
T ss_pred             eCcccCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            368899999999999999999999999999876

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.19  E-value=9.8e-07  Score=52.76  Aligned_cols=32  Identities=25%  Similarity=0.294  Sum_probs=29.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   35 (36)
T 2elt_A            4 GSSGKPYKCPQCSYASAIKANLNVHLRK--HTGE   35 (36)
T ss_dssp             SCCCCSEECSSSSCEESSHHHHHHHHHH--HTCC
T ss_pred             CCCCCCCCCCCCCcccCCHHHHHHHHHH--ccCC
Confidence            4688999999999999999999999999  8765

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.19  E-value=1.2e-06  Score=55.58  Aligned_cols=33  Identities=24%  Similarity=0.381  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eq4_A           14 NCKECGKSFSRAPCLLKHERLHSGEKPSGPSSG   46 (46)
T ss_dssp             CBTTTTBCCSCHHHHHHHHHHCCSSSCCCCCCC
T ss_pred             ECCCCCCccCchHHHHHHHHhcCCCCCCCCCCC
Confidence            468899999999999999999999999999875

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=98.19  E-value=1.4e-06  Score=55.40  Aligned_cols=33  Identities=24%  Similarity=0.269  Sum_probs=29.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em0_A           14 KCRECDMCFSQASSLRLHQNVHVGEKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHGGGGSSSSCSCSSCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCCCcCCCCC
Confidence            468889999999999999999999999999875

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.19  E-value=1.1e-06  Score=55.94  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|.+|+++|.+++++.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epz_A           14 DCIDCGKAFSDHIGLNQHRRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCTTTCCCBSSHHHHHHHHTTTTTCCCCSSCCC
T ss_pred             ECCCCCceeCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            368899999999999999999999999999875

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.18  E-value=1.3e-06  Score=55.40  Aligned_cols=33  Identities=24%  Similarity=0.309  Sum_probs=29.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eop_A           14 ECRECGKSFSFNSQLIVHQRIHTGENPSGPSSG   46 (46)
T ss_dssp             BCTTTCCBCSSHHHHHHHHTTTTTSCCSCCCCC
T ss_pred             eCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            468899999999999999999999999999875

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.18  E-value=1e-06  Score=52.72  Aligned_cols=32  Identities=34%  Similarity=0.520  Sum_probs=29.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++
T Consensus         4 ~~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   35 (36)
T 2els_A            4 GSSGKIFTCEYCNKVFKFKHSLQAHLRI--HTNE   35 (36)
T ss_dssp             TSCCCCEECTTTCCEESSHHHHHHHHHH--HCCC
T ss_pred             CCCCCCEECCCCCceeCCHHHHHHHHHH--hCCC
Confidence            4688999999999999999999999999  8765

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.17  E-value=1.2e-06  Score=55.76  Aligned_cols=33  Identities=33%  Similarity=0.418  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|.+|+++|.+++|+.|++|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytq_A           14 GCSECGKAFSSKSYLIIHMRTHSGEKPSGPSSG   46 (46)
T ss_dssp             BCSSSCCBCSCHHHHHHHHTTTCCSCSSCCCCC
T ss_pred             CCCccChhhCChHHHHHHHHHhCCCCCCCCCCC
Confidence            368899999999999999999999999999876

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.17  E-value=1.4e-06  Score=55.34  Aligned_cols=33  Identities=18%  Similarity=0.150  Sum_probs=29.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eov_A           14 KCSDCGKSFTWKSRLRIHQKCHTGERHSGPSSG   46 (46)
T ss_dssp             BCSSSCCBCSSHHHHHHHHHHHSCCSSCCSCCC
T ss_pred             cCCccChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            368899999999999999999999999999876

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.16  E-value=6.1e-07  Score=66.24  Aligned_cols=43  Identities=16%  Similarity=0.406  Sum_probs=37.4

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccc
Q 019380            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKL   52 (342)
Q Consensus         8 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~   52 (342)
                      ..++++||+|+.|++.|..+..|..|+++  |+++++ +|..|.+.
T Consensus        19 ~H~~~kpy~C~~C~k~F~~~~~L~~H~~~--Ht~ekp~~C~~~~~~   62 (88)
T 1x6f_A           19 PRLQNSTYQCKHCDSKLQSTAELTSHLNI--HNEEFQKRAKRQERR   62 (88)
T ss_dssp             SCCCCSCEECSSSCCEESSHHHHHHHHHH--HHHHHHHHCCCCSCC
T ss_pred             ccCCCCCCcCCCCCCEeCCHHHHHHHHHH--hCCCCCcccchhhhH
Confidence            35689999999999999999999999999  888887 88776543

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.16  E-value=1.3e-06  Score=55.57  Aligned_cols=33  Identities=24%  Similarity=0.406  Sum_probs=29.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|.+|+++|.+++|+.|++|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytn_A           14 KCNECGKVFTQNSHLARHRGIHTGEKPSGPSSG   46 (46)
T ss_dssp             BCTTTCCBCSSHHHHHHHGGGTSCCCCCSCCCC
T ss_pred             ECCCCCCeeCCHHHHHHHhhhcCCCCCCCCCCC
Confidence            468899999999999999999999999999875

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=98.15  E-value=1e-06  Score=55.77  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=31.2

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISG  113 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~  113 (342)
                      .|+.|++.|..++.|..|+++|++++++.|+.|+
T Consensus        12 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~cg   45 (45)
T 2epq_A           12 SCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPSSG   45 (45)
T ss_dssp             EETTTTEECSCHHHHHHHHHHHSCCCCCCCCCCC
T ss_pred             cCCCCCcccCCHHHHHHHHHHccCCCCCCCcCCC
Confidence            4688999999999999999999999999999875

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.15  E-value=9.1e-07  Score=56.31  Aligned_cols=33  Identities=27%  Similarity=0.333  Sum_probs=29.3

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|+++|...+.|..|+++|.+++++.|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2eoo_A           14 GCNECGKNFGRHSHLIEHLKRHFREKSSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHSTTSSCCSCC
T ss_pred             EccccCcccCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            367889999999999999999999999999875

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.14  E-value=1.1e-06  Score=55.92  Aligned_cols=33  Identities=21%  Similarity=0.263  Sum_probs=29.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytm_A           14 KCMECGKAFGDNSSCTQHQRLHTGQRPSGPSSG   46 (46)
T ss_dssp             SBTTTTBCCSSHHHHHHHHHHHHSCCCCCCCCC
T ss_pred             CCCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            468899999999999999999999999999875

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.14  E-value=1.3e-06  Score=55.54  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=29.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|.+|+++|.+++++.|++|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emf_A           14 ECTECGKAFTRKSTLSMHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESCHHHHHHHGGGTSCSSCSCCCCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            368899999999999999999999999999875

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=98.14  E-value=1.4e-06  Score=55.37  Aligned_cols=33  Identities=27%  Similarity=0.458  Sum_probs=29.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2el4_A           14 GCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG   46 (46)
T ss_dssp             ECSSSSCEESSHHHHHHHGGGSSSCCCSCCTTC
T ss_pred             ECCCCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            368899999999999999999999999999875

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=98.13  E-value=1.8e-06  Score=51.97  Aligned_cols=31  Identities=32%  Similarity=0.595  Sum_probs=28.4

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~   41 (342)
                      .++++||+|+.|++.|.++..|..|+++  |++
T Consensus         6 h~~~k~~~C~~C~k~f~~~~~l~~H~~~--H~~   36 (37)
T 1p7a_A            6 STGIKPFQCPDCDRSFSRSDHLALHRKR--HML   36 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGG--GTC
T ss_pred             CCCCCCccCCCCCcccCcHHHHHHHHHH--hcc
Confidence            4689999999999999999999999999  765

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.13  E-value=1.4e-06  Score=55.36  Aligned_cols=33  Identities=18%  Similarity=0.195  Sum_probs=29.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2em7_A           14 KCEECGKGFICRRDLYTHHMVHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESCHHHHHHHGGGGTTCCCSSTTCC
T ss_pred             cCCCccchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            368899999999999999999999999999876

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.13  E-value=1.4e-06  Score=55.39  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=29.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2eq0_A           14 KCHECGKVFRRNSHLARHQLIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHTTTCCCCCSCCSCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            368899999999999999999999999999875

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=98.12  E-value=1.5e-06  Score=55.21  Aligned_cols=33  Identities=24%  Similarity=0.397  Sum_probs=29.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2ema_A           14 KCNECGKVFSRNSQLSQHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTGGGCCCCCSSSCC
T ss_pred             CCCCCcchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367889999999999999999999999999875

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.12  E-value=1.5e-06  Score=55.17  Aligned_cols=33  Identities=24%  Similarity=0.375  Sum_probs=29.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|.+|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eoe_A           14 KCNECGKVFTQNSHLANHQRIHTGVKPSGPSSG   46 (46)
T ss_dssp             EETTTTEECSSHHHHHHHHGGGSCCCSCSSCCC
T ss_pred             ECCCcChhhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            368899999999999999999999999999876

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.12  E-value=1.7e-06  Score=54.98  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eml_A           14 ECSVCGKAFSHRQSLSVHQRIHSGKKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGSSCCCSCSSCC
T ss_pred             eCCCcCCccCCHHHHHHHHHHhcCCCCCCCCCC
Confidence            367889999999999999999999999999876

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.11  E-value=1.5e-06  Score=55.20  Aligned_cols=33  Identities=24%  Similarity=0.372  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ene_A           14 KCNECGKVFRHNSYLSRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTCCCCCCSCCCC
T ss_pred             ECCCCCchhCChHHHHHHHhhcCCCCCCCCCCC
Confidence            368899999999999999999999999999876

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.11  E-value=1.2e-06  Score=58.04  Aligned_cols=45  Identities=20%  Similarity=0.350  Sum_probs=33.7

Q ss_pred             cccCChhhhhhhc-----CCCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCCCCCC
Q 019380           51 KLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSAPV  107 (342)
Q Consensus        51 ~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~~~~~  107 (342)
                      +.|.....|..|+     .++|            .|+.|++.|...+.|..|+++|.+++|+
T Consensus         4 k~~~~~~~l~~h~~~H~~~k~~------------~C~~C~k~f~~~~~L~~H~~~H~~~kp~   53 (54)
T 1yui_A            4 KRAKHPPGTEKPRSRSQSEQPA------------TCPICYAVIRQSRNLRRHLELRHFAKPG   53 (54)
T ss_dssp             CCCSCSSCCCCCHHHHTSSCCE------------ECTTTCCEESSHHHHHHHHHHHTTTSCC
T ss_pred             cccCCCcchhhHHHhcCCCCCc------------cCCCCCcccCCHHHHHHHHHHhccCCCC
Confidence            4555666666665     2334            3678899999999999999999999886

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.11  E-value=1.4e-06  Score=55.39  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~c   46 (46)
T 2ytk_A           14 KCNECGKVFTQNSHLTNHWRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHSSSSCSSCCCC
T ss_pred             eCCcCCCccCCHHHHHHHHHHHCCCCCCCCCCC
Confidence            367899999999999999999999999999875

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.11  E-value=1.5e-06  Score=55.21  Aligned_cols=33  Identities=21%  Similarity=0.247  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|++|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em5_A           14 QCHECGRGFTLKSHLNQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTSCSCCSSCCCC
T ss_pred             ECCcCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            368899999999999999999999999999876

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=98.11  E-value=1.7e-06  Score=49.03  Aligned_cols=29  Identities=17%  Similarity=0.430  Sum_probs=26.7

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      ++||.|+.|++.|..+..|..|+++  |+++
T Consensus         1 ~k~~~C~~C~~~f~~~~~l~~H~~~--h~~~   29 (30)
T 2m0d_A            1 MKPYQCDYCGRSFSDPTSKMRHLET--HDTD   29 (30)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHT--TCCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHH--hccC
Confidence            5799999999999999999999999  8765

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.11  E-value=1.5e-06  Score=55.14  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emm_A           14 KCNECGKSFIQSAHLIQHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHSCCCTTSSSCC
T ss_pred             eCCCCChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367889999999999999999999999999876

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.10  E-value=1.5e-06  Score=55.23  Aligned_cols=33  Identities=21%  Similarity=0.343  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|+++|..++.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emy_A           14 ECHECGKAFSRKYQLISHQRTHAGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHTTSCCSCSSCC
T ss_pred             CCCCCCcccCcHHHHHHHHHHcCCCCCCCCCCC
Confidence            368899999999999999999999999999875

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.10  E-value=1.7e-06  Score=54.89  Aligned_cols=33  Identities=24%  Similarity=0.385  Sum_probs=29.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytr_A           14 KCNECGKAFSQTSKLARHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             CCTTTCCCCSSHHHHHHHHTTTTTCSCCCSCCC
T ss_pred             CCCCCCCccCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            368899999999999999999999999999876

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.10  E-value=1.3e-06  Score=48.72  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=25.0

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccC
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHS   40 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~   40 (342)
                      ++||+|+.|++.|..++.|..|+++  |+
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~--H~   27 (27)
T 2kvg_A            1 AAPYRCPLCRAGCPSLASMQAHMRG--HS   27 (27)
T ss_dssp             CCTEEETTTTEEESCHHHHHHHHTT--CC
T ss_pred             CcCcCCCCCCcccCCHHHHHHHHHh--cC
Confidence            5799999999999999999999998  64

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.10  E-value=1.5e-06  Score=54.60  Aligned_cols=33  Identities=27%  Similarity=0.486  Sum_probs=29.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|+++|..++.|..|+++|.+++++.|+.|
T Consensus        12 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   44 (44)
T 2emx_A           12 GCSCCEKAFSSKSYLLVHQQTHAEEKPSGPSSG   44 (44)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHHTSSCSCSCCCC
T ss_pred             cCCCCCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            368899999999999999999999999999875

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=98.10  E-value=1.9e-06  Score=54.81  Aligned_cols=33  Identities=18%  Similarity=0.337  Sum_probs=29.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2el6_A           14 KCSQCEKSFSGKLRLLVHQRMHTREKPSGPSSG   46 (46)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGGCCSSCCSCCCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            368899999999999999999999999999876

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.09  E-value=1.8e-06  Score=54.84  Aligned_cols=33  Identities=21%  Similarity=0.189  Sum_probs=29.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2epw_A           14 KCTECGKAFCWKSQLIMHQRTHVDDKHSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSSHHHHHHHHHCCSCCCSCCCCC
T ss_pred             eCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            368899999999999999999999999999875

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.09  E-value=1.8e-06  Score=48.04  Aligned_cols=27  Identities=15%  Similarity=0.445  Sum_probs=25.1

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccC
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHS   40 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~   40 (342)
                      ++||+|+.|++.|..+..|..|+++  |+
T Consensus         1 ek~~~C~~C~k~f~~~~~l~~H~~~--H~   27 (27)
T 2kvh_A            1 EKPFSCSLCPQRSRDFSAMTKHLRT--HG   27 (27)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHHH--CC
T ss_pred             CcCccCCCcChhhCCHHHHHHHHHH--cc
Confidence            5799999999999999999999998  64

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.09  E-value=1.4e-06  Score=52.61  Aligned_cols=32  Identities=25%  Similarity=0.243  Sum_probs=28.5

Q ss_pred             CCCCCcccccccccccCCHHHHHHH-HhhhccCCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEH-MKISYHSVH   42 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H-~~~~~H~~~   42 (342)
                      .++++||+|+.|++.|..+..|..| +++  |++.
T Consensus         4 H~~~k~~~C~~C~k~f~~~~~L~~H~~~~--H~~~   36 (37)
T 2elm_A            4 GSSGHLYYCSQCHYSSITKNCLKRHVIQK--HSNI   36 (37)
T ss_dssp             SSSSCEEECSSSSCEEECHHHHHHHHHHH--TCCC
T ss_pred             cCCCcCeECCCCCcccCCHHHHHHHHHHH--ccCc
Confidence            3578999999999999999999999 888  8754

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.09  E-value=1.5e-06  Score=55.26  Aligned_cols=33  Identities=15%  Similarity=0.292  Sum_probs=29.4

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytg_A           14 KCGECGKSYNQRVHLTQHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSSHHHHTTGGGGSSCCSSCSCCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367889999999999999999999999999876

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.08  E-value=1.8e-06  Score=54.79  Aligned_cols=33  Identities=18%  Similarity=0.282  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ytd_A           14 KCSECGKAFHRHTHLNEHRRIHTGYRPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHTCCCSSCSSCC
T ss_pred             ECCCCCCeeCChHHHHHHHHHcCCCCCCCCCCC
Confidence            367899999999999999999999999999876

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=98.08  E-value=2.1e-06  Score=54.48  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=29.5

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|...+.|..|+++|.+++++.|++|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em9_A           14 NCKECGKSFRWASCLLKHQRVHSGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHGGGGTSCCCCSTTCC
T ss_pred             ECCccccccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            367889999999999999999999999999876

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.08  E-value=1.5e-06  Score=55.27  Aligned_cols=33  Identities=27%  Similarity=0.421  Sum_probs=29.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|++|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~c   46 (46)
T 2emh_A           14 ICTVCGKAFTDRSNLIKHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHHCSSCSSSCCC
T ss_pred             CCCCCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            368899999999999999999999999999875

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.08  E-value=2e-06  Score=54.60  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|...+.|..|+++|.+++++.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2enc_A           14 KCEECGKGFYTNSQCYSHQRSHSGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHSCCSSCCSSCCC
T ss_pred             CCCCCCCcCCChHHHHHHHHHhCCCCCCCCCCC
Confidence            367899999999999999999999999999876

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.08  E-value=1.6e-06  Score=55.05  Aligned_cols=33  Identities=27%  Similarity=0.411  Sum_probs=29.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en6_A           14 GCNECGKTFSQKSILSAHQRTHTGEKPSGPSSG   46 (46)
T ss_dssp             EETTTTEEESSHHHHHHHHHHHSSCCCSSSCCC
T ss_pred             ECCCCCcccCchHHHHHHHHHcCCCCCCCCCCC
Confidence            368899999999999999999999999999876

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.07  E-value=2e-06  Score=54.65  Aligned_cols=33  Identities=24%  Similarity=0.360  Sum_probs=30.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|.+|+++|.+++++.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ep0_A           14 KCDVCHKSFRYGSSLTVHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTSSSCCCSCCCC
T ss_pred             eCcccCcccCChHHHHHHHHHhCCCCCCCCCCC
Confidence            368899999999999999999999999999876

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.07  E-value=2.3e-06  Score=54.30  Aligned_cols=33  Identities=18%  Similarity=0.380  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2eme_A           14 VCDYCGKAFGLSAELVRHQRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGCCCSCCSSCCC
T ss_pred             ECCCCChhhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367889999999999999999999999999876

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=98.07  E-value=2e-06  Score=48.18  Aligned_cols=28  Identities=25%  Similarity=0.526  Sum_probs=25.7

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCC
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~   41 (342)
                      ++||+|+.|++.|..+..|..|+++  |++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~--h~~   28 (28)
T 2kvf_A            1 MRPYSCSVCGKRFSLKHQMETHYRV--HTG   28 (28)
T ss_dssp             CCSEECSSSCCEESCHHHHHHHHTT--SCC
T ss_pred             CcCccCCCCCcccCCHHHHHHHHHh--cCC
Confidence            5799999999999999999999998  763

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.07  E-value=1.7e-06  Score=55.00  Aligned_cols=33  Identities=18%  Similarity=0.238  Sum_probs=29.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|++|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2ysp_A           14 KCEKCGKGYNSKFNLDMHQKVHTGERPSGPSSG   46 (46)
T ss_dssp             EETTTTEEESCHHHHHHHHTTSCSCCSSCCSCC
T ss_pred             ECCCCCCccCCHHHHHHHHHhhCCCCCCCCCCC
Confidence            368899999999999999999999999999876

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.07  E-value=1.6e-06  Score=55.09  Aligned_cols=33  Identities=12%  Similarity=0.034  Sum_probs=29.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2em8_A           14 KCVECGKGYKRRLDLDFHQRVHTGEKLSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHCCCCCCSCCC
T ss_pred             ECcccCchhCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            368899999999999999999999999999876

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=98.06  E-value=2e-06  Score=52.00  Aligned_cols=28  Identities=25%  Similarity=0.382  Sum_probs=25.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhh
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      ..+||||+|+.|+|+|+++++|.+|+.-
T Consensus         3 ~~gekp~~C~~CgK~F~~~s~L~~H~py   30 (36)
T 1fv5_A            3 LLKPARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             SSSCCCCEETTTTEECSCHHHHHHHHHH
T ss_pred             CCCccCeECCCCCCccCCHhHccCcCCe
Confidence            4689999999999999999999999844

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.06  E-value=1.6e-06  Score=55.06  Aligned_cols=33  Identities=27%  Similarity=0.290  Sum_probs=29.4

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2emp_A           14 MCNECGKAFSVYSSLTTHQVIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESCHHHHHHHHHHHHCCSCCSCCCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367889999999999999999999999999875

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=1.3e-06  Score=52.59  Aligned_cols=32  Identities=25%  Similarity=0.307  Sum_probs=28.9

Q ss_pred             CCCCCcccccccccccCCH-HHHHHHHhhhccCCC
Q 019380            9 KRSTARHKCVACYKQFKRK-DHLIEHMKISYHSVH   42 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~-~~L~~H~~~~~H~~~   42 (342)
                      .++++||+|+.|++.|..+ ..|..|+++  |+++
T Consensus         4 h~~~k~~~C~~C~k~f~~~~~~L~~H~~~--H~~~   36 (37)
T 2elp_A            4 GSSGRAMKCPYCDFYFMKNGSDLQRHIWA--HEGV   36 (37)
T ss_dssp             CCCCCCEECSSSSCEECSSCHHHHHHHHH--HHTC
T ss_pred             CCCCCCeECCCCChhhccCHHHHHHHHHh--cCCC
Confidence            4588999999999999999 999999999  7764

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.06  E-value=2.1e-06  Score=54.47  Aligned_cols=33  Identities=21%  Similarity=0.294  Sum_probs=29.5

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2en1_A           14 KCEECGKRFTQNSQLHSHQRVHTGEKPSGPSSG   46 (46)
T ss_dssp             EETTTTEEESSHHHHHHHGGGGSCCCCSCCCCC
T ss_pred             eCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367889999999999999999999999999875

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=98.06  E-value=2.2e-06  Score=55.31  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=28.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHh-hhccCCCCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP   44 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~-~~~H~~~~~   44 (342)
                      .++++||+|..|++.|..+..|..|++ +  |+++..
T Consensus         2 Ht~~kp~~C~~C~k~F~~~~~L~~H~~~~--H~~e~~   36 (48)
T 3iuf_A            2 EDRDKPYACDICGKRYKNRPGLSYHYAHS--HLAEEE   36 (48)
T ss_dssp             CTTTSCEECTTTCCEESSHHHHHHHHHHS--SCC---
T ss_pred             CCCCcCEECCCcCcccCCHHHHHHHhhhh--cCCCCC
Confidence            368999999999999999999999999 8  887755

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.06  E-value=2.2e-06  Score=54.37  Aligned_cols=33  Identities=18%  Similarity=0.081  Sum_probs=29.5

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|...+.|..|+++|.+++++.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2en8_A           14 TCDECGKNFCYISALRIHQRVHMGEKCSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHTTTCCSCSSCCSCC
T ss_pred             ECCCcCcccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367889999999999999999999999999875

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.05  E-value=2.1e-06  Score=54.48  Aligned_cols=33  Identities=24%  Similarity=0.198  Sum_probs=29.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|...+.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2yso_A           14 QCRECGEIFFQYVSLIEHQVLHMGQKNSGPSSG   46 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHSCCSCCCTTCC
T ss_pred             EccccChhhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367889999999999999999999999999875

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.05  E-value=2.7e-06  Score=54.14  Aligned_cols=33  Identities=24%  Similarity=0.266  Sum_probs=29.8

Q ss_pred             cccccccccCChhhHHHHHh-hcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKE-ACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~-~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|...+.|..|++ +|.+++|+.|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~~H~~~k~~~C~~C   47 (47)
T 2epx_A           14 ECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSSG   47 (47)
T ss_dssp             CCSSSCCCBSSHHHHHHHHTTTTTTSCSSSCCCC
T ss_pred             ECCccCchhCChHHHHHHhHhhcCCCCCCCCCCC
Confidence            46889999999999999999 9999999999875

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.05  E-value=1.6e-06  Score=55.07  Aligned_cols=33  Identities=24%  Similarity=0.429  Sum_probs=29.2

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~C   46 (46)
T 2yu8_A           14 KCNECGKVFTQNSHLARHRRVHTGGKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSSHHHHHHTHHHHSCCCSCSCCC
T ss_pred             ECCcCCchhCCHHHHHHHHHhcCCCCCCCCCCC
Confidence            367888999999999999999999999999875

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.04  E-value=1.5e-06  Score=55.32  Aligned_cols=33  Identities=18%  Similarity=0.252  Sum_probs=29.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|++++++.|++|
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   46 (46)
T 2ytt_A           14 QCSECGKSFSGSYRLTQHWITHTREKPSGPSSG   46 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHTHHHHCCCCSCCCC
T ss_pred             eCCCCCcccCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            468899999999999999999999999999876

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.04  E-value=4.1e-06  Score=53.16  Aligned_cols=32  Identities=22%  Similarity=0.296  Sum_probs=29.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yth_A           14 QCEECGKRFTQNSHLHSHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSCCCBSSHHHHHHHGGGGTTCCCSSCCC
T ss_pred             CCCCCCcccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            46889999999999999999999999999974

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.04  E-value=2.5e-06  Score=54.17  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=29.3

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~~   46 (46)
T 2ep3_A           14 RCAECGKAFTDRSNLFTHQKIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTTTSCCCCTTCC
T ss_pred             ECCCCCchhCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            367899999999999999999999999999863

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.03  E-value=4.3e-06  Score=52.94  Aligned_cols=32  Identities=22%  Similarity=0.232  Sum_probs=29.1

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ep1_A           14 ECSDCGKSFIKKSQLHVHQRIHTGENPSGPSS   45 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHGGGSSSCCCSSSC
T ss_pred             CCCCCCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            46889999999999999999999999999974

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=98.01  E-value=3.3e-06  Score=47.45  Aligned_cols=28  Identities=29%  Similarity=0.660  Sum_probs=25.8

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      +||+|+.|++.|..+..|..|+++  |+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--h~~~   28 (29)
T 1ard_A            1 RSFVCEVCTRAFARQEHLKRHYRS--HTNE   28 (29)
T ss_dssp             CCCBCTTTCCBCSSHHHHHHHHHH--HSCC
T ss_pred             CCeECCCCCcccCCHHHHHHHHHH--hcCC
Confidence            589999999999999999999999  7765

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=98.00  E-value=3.1e-06  Score=55.93  Aligned_cols=33  Identities=21%  Similarity=0.585  Sum_probs=25.8

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCCC
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~   44 (342)
                      ++++||+|+.|++.|..+..|..|+++  |+++++
T Consensus        20 ~~~k~~~C~~C~k~f~~~~~L~~H~~~--H~~~kp   52 (54)
T 1yui_A           20 QSEQPATCPICYAVIRQSRNLRRHLEL--RHFAKP   52 (54)
T ss_dssp             TSSCCEECTTTCCEESSHHHHHHHHHH--HTTTSC
T ss_pred             CCCCCccCCCCCcccCCHHHHHHHHHH--hccCCC
Confidence            467788888888888888888888888  776654

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=98.00  E-value=3.6e-06  Score=53.47  Aligned_cols=32  Identities=25%  Similarity=0.419  Sum_probs=28.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..+..|.+|+++|.+++++.|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eon_A           14 KCQVCGKAFRVSSHLVQHHSVHSGERPSGPSS   45 (46)
T ss_dssp             BCSSSCCBCSSHHHHHHHTTTTTSCCSCTTSC
T ss_pred             CCCCCCcccCcHHHHHHHHHhcCCCCCCCCCC
Confidence            36889999999999999999999999999874

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.99  E-value=2.9e-06  Score=51.35  Aligned_cols=33  Identities=24%  Similarity=0.489  Sum_probs=29.6

Q ss_pred             CCCCccccc--ccccccCCHHHHHHHHhhhccCCCCC
Q 019380           10 RSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQP   44 (342)
Q Consensus        10 ~~~~~~~C~--~C~k~f~~~~~L~~H~~~~~H~~~~~   44 (342)
                      ++++||+|+  .|++.|.++..|..|+++  |+++++
T Consensus         2 ~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~k~   36 (38)
T 1bhi_A            2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHK--HEMTLK   36 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHH--HHTTTT
T ss_pred             CCCcceECCCCCCCcccCCHHHHHHHHHH--hCCCCC
Confidence            578999999  699999999999999999  877654

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.99  E-value=4.6e-06  Score=55.07  Aligned_cols=36  Identities=19%  Similarity=0.286  Sum_probs=30.7

Q ss_pred             ccccccccCChhhHHHHHh-hcCCCCCCCCccccccc
Q 019380           81 CNLCMNIFDSPSSLIKHKE-ACSLSAPVPFKISGAID  116 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~-~h~~~~~~~~~~c~~~~  116 (342)
                      |+.|++.|.....|.+|++ +|.+++++.|++|++..
T Consensus        15 C~~C~k~f~~~~~L~~H~~~~H~~~k~~~C~~C~k~F   51 (54)
T 2eps_A           15 CQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVWVSGP   51 (54)
T ss_dssp             CSSSCCEESSHHHHHHHHHHTSCCCCCCCSSSSCCSS
T ss_pred             CCCCCcccCCHHHHHHHHHHhcCCCCCccCCCCCCCC
Confidence            6788888889999999987 89999999999888754

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=97.99  E-value=2.8e-06  Score=51.30  Aligned_cols=32  Identities=25%  Similarity=0.542  Sum_probs=28.8

Q ss_pred             CCCCCccccc--ccccccCCHHHHHHHHhhhccCCC
Q 019380            9 KRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus         9 ~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      .++++||+|+  .|++.|..++.|..|+++  |+++
T Consensus         3 ~~~~k~~~C~~~~C~k~f~~~~~L~~H~~~--H~~e   36 (37)
T 1va1_A            3 PGKKKQHICHIQGCGKVYGKTSHLRAHLRW--HTGE   36 (37)
T ss_dssp             SSSCCCEECCSTTCCCEESCHHHHHHHHHH--HHTT
T ss_pred             CCCCCCCCCCCCCCCCccCCHHHHHHHHHh--cCCC
Confidence            4689999998  599999999999999999  8765

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.98  E-value=3.6e-06  Score=53.44  Aligned_cols=33  Identities=18%  Similarity=0.231  Sum_probs=29.3

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~~   46 (46)
T 2em2_A           14 KCKECGKAFRQNIHLASHLRIHTGEKPSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHCCCCSSCSSCC
T ss_pred             ECCcCCchhCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            367899999999999999999999999999863

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.98  E-value=3.9e-06  Score=52.50  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=29.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++
T Consensus        12 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   43 (43)
T 2yrm_A           12 FCNECDCRFSEEASLKRHTLQTHSDKSGPSSG   43 (43)
T ss_dssp             CCSSSCCCBSSHHHHHHHHHHHTCTTCSSSCC
T ss_pred             ECCCCCCeeCChHHHHHHHHhhCCCCCccCCC
Confidence            46889999999999999999999999999873

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.98  E-value=2.5e-06  Score=48.09  Aligned_cols=28  Identities=36%  Similarity=0.694  Sum_probs=25.9

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      +||+|+.|++.|..+..|..|+++  |+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   28 (29)
T 1rik_A            1 YKFACPECPKRFMRSDHLTLHILL--HENK   28 (29)
T ss_dssp             CCEECSSSSCEESCSHHHHHHHTG--GGSC
T ss_pred             CCccCCCCCchhCCHHHHHHHHHH--hcCC
Confidence            689999999999999999999999  8765

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.97  E-value=4.8e-06  Score=52.82  Aligned_cols=32  Identities=25%  Similarity=0.446  Sum_probs=28.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..+..|..|+++|.+++++.|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enh_A           14 ECDVCRKAFSHHASLTQHQRVHSGEKPSGPSS   45 (46)
T ss_dssp             BCTTTCCBCSSSHHHHHHGGGSCCSCCCCCCC
T ss_pred             CCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36889999999999999999999999999873

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.97  E-value=6.1e-06  Score=52.27  Aligned_cols=32  Identities=25%  Similarity=0.341  Sum_probs=28.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq1_A           14 KCNECGKAFRAHSNLTTHQVIHTGEKPSGPSS   45 (46)
T ss_dssp             CCTTTTCCCSSHHHHHHHHTTTCCSCCSSCCC
T ss_pred             ECCcCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            46889999999999999999999999999874

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.97  E-value=5.5e-06  Score=51.83  Aligned_cols=31  Identities=29%  Similarity=0.313  Sum_probs=27.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~  110 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2en7_A           14 VCNECGKAFRSKSYLIIHTRTHTGESGPSSG   44 (44)
T ss_dssp             CCTTTCCCCSSHHHHHHHHTTTCCSSSSCCC
T ss_pred             ECCCCCCccCCHHHHHHHhhhcCCCCCCCCC
Confidence            4688999999999999999999999998874

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.97  E-value=5e-06  Score=52.76  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=28.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|.+|+++|.+++++.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eoh_A           14 ECKECRKTFIQIGHLNQHKRVHTGERSSGPSS   45 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHHHCSSCCSCSTTC
T ss_pred             CCCCcCchhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            46889999999999999999999999999873

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.96  E-value=3.9e-06  Score=48.60  Aligned_cols=29  Identities=34%  Similarity=0.553  Sum_probs=26.7

Q ss_pred             CCccccc--ccccccCCHHHHHHHHhhhccCCC
Q 019380           12 TARHKCV--ACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        12 ~~~~~C~--~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      ++||+|+  .|++.|..+..|..|+++  |+++
T Consensus         1 ek~~~C~~~~C~k~f~~~~~L~~H~~~--H~~~   31 (32)
T 1zfd_A            1 DRPYSCDHPGCDKAFVRNHDLIRHKKS--HQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGG--GTCC
T ss_pred             CCCCcCcCCCCCCccCCHHHHHHHHHH--ccCC
Confidence            5799999  899999999999999999  8865

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=97.96  E-value=4.4e-06  Score=58.50  Aligned_cols=53  Identities=23%  Similarity=0.358  Sum_probs=38.6

Q ss_pred             cCCCCC-cccc--CccccCChhhhhhhc-----CCCcccCCCCCcccCCcccccccccCChhhHHHHHhhc
Q 019380           39 HSVHQP-KCAV--CQKLSKSFESLREHL-----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEAC  101 (342)
Q Consensus        39 H~~~~~-~C~~--C~~~f~~~~~l~~H~-----~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h  101 (342)
                      ++..++ .|..  |++.|.....|..|+     .++|.|.          .+.|++.|..+..|.+|+++|
T Consensus        12 ~~~~~~~~C~~~~C~k~f~~~~~L~~H~~~H~~~~~~~C~----------~~~C~k~f~~~~~l~~H~~~H   72 (72)
T 2epa_A           12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCS----------WKGCERRFARSDELSRHRRTH   72 (72)
T ss_dssp             CCCCCCEECSSTTTCCEESSHHHHHHHHHHHSSSCSEECC----------CTTCCCEESSHHHHHHHTTTC
T ss_pred             ccccCceeCCCCCCccccCCHHHHHHHHHhcCCCCCccCC----------CCCCCcccCCHHHHHhHhhcC
Confidence            344444 7877  999999999898887     3455441          134888888999999998765

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.96  E-value=5.1e-06  Score=47.73  Aligned_cols=28  Identities=32%  Similarity=0.587  Sum_probs=25.9

Q ss_pred             Cccccc--ccccccCCHHHHHHHHhhhccCCC
Q 019380           13 ARHKCV--ACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        13 ~~~~C~--~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      +||+|+  .|++.|..+..|..|+++  |+++
T Consensus         1 kp~~C~~~~C~k~f~~~~~L~~H~~~--H~~~   30 (31)
T 1sp2_A            1 RPFMCTWSYCGKRFTRSDELQRHKRT--HTGE   30 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT--TSCC
T ss_pred             CCcCCcCCCCCcccCCHhHHHHHHHH--hcCC
Confidence            589998  999999999999999999  8865

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.96  E-value=4.6e-06  Score=52.86  Aligned_cols=32  Identities=25%  Similarity=0.455  Sum_probs=29.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|.+|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2enf_A           14 KCNECGKVFTQNSHLVRHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             BCSSSCCBCSSHHHHHHHHTTTTTSSCCCCSC
T ss_pred             ECCCCCcccCCHHHHHHHHHhhCCCCCCCCCC
Confidence            46889999999999999999999999999974

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.95  E-value=5.1e-06  Score=52.67  Aligned_cols=32  Identities=22%  Similarity=0.359  Sum_probs=29.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2emg_A           14 ICSECGKVFTHKTNLIIHQKIHTGERPSGPSS   45 (46)
T ss_dssp             BCTTTCCBCSSHHHHHHHHTTTSCCCCSCSCC
T ss_pred             ECCccCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            46889999999999999999999999999974

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.95  E-value=5.5e-06  Score=52.50  Aligned_cols=32  Identities=25%  Similarity=0.403  Sum_probs=28.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq2_A           14 QCNECGKAFSQTSKLARHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             SCCSSCCCCSSHHHHHHHGGGGCCCCCCCCCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            46889999999999999999999999999874

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.95  E-value=5.1e-06  Score=52.67  Aligned_cols=32  Identities=25%  Similarity=0.415  Sum_probs=29.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yti_A           14 KCNECGKVFTQNSHLARHRGIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHTTTSCSCCSSTTC
T ss_pred             ECCCCCcccCChhHHHHHhHhcCCCCCCCCCC
Confidence            46889999999999999999999999999874

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.95  E-value=4.8e-06  Score=52.82  Aligned_cols=32  Identities=25%  Similarity=0.368  Sum_probs=29.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytp_A           14 ECSECGKAFARKSTLIMHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTSCCCCCSSCC
T ss_pred             ECCcCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36889999999999999999999999999974

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.94  E-value=5e-06  Score=52.80  Aligned_cols=32  Identities=22%  Similarity=0.363  Sum_probs=29.2

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eom_A           14 RCSDCGKFFLQASNFIQHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHHHHSSCCCSSCCC
T ss_pred             CCCCCCCeeCChHHHHHHHHHhCCCCCCCCCC
Confidence            46889999999999999999999999999974

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.94  E-value=3.3e-06  Score=47.40  Aligned_cols=28  Identities=39%  Similarity=0.657  Sum_probs=25.8

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      +||+|+.|++.|.....|..|+++  |+++
T Consensus         1 ~~~~C~~C~k~f~~~~~l~~H~~~--H~~~   28 (29)
T 2m0f_A            1 GPLKCRECGKQFTTSGNLKRHLRI--HSGE   28 (29)
T ss_dssp             CCEECTTTSCEESCHHHHHHHHHH--HHTC
T ss_pred             CCccCCCCCCccCChhHHHHHHHH--hcCC
Confidence            589999999999999999999999  7765

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.93  E-value=4.9e-06  Score=52.72  Aligned_cols=32  Identities=19%  Similarity=0.418  Sum_probs=29.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2em3_A           14 ECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHCCCCCCCSCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36889999999999999999999999999974

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.93  E-value=5.4e-06  Score=52.49  Aligned_cols=32  Identities=25%  Similarity=0.284  Sum_probs=28.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~p~~C~~   45 (46)
T 2yts_A           14 ICNECGKSFIQKSHLNRHRRIHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHGGGTSSCCSSCCCC
T ss_pred             ECCCCChhhCChHHHHHHHHhcCCCCCcCCCC
Confidence            36889999999999999999999999999874

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=97.93  E-value=5.7e-06  Score=51.27  Aligned_cols=31  Identities=19%  Similarity=0.349  Sum_probs=27.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~  110 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+
T Consensus        12 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2el5_A           12 ECSECGKAFNRKDQLISHQRTHAGESGPSSG   42 (42)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGCCCCSCCCC
T ss_pred             cCCCcChhhCCHHHHHHHHHhcCCCCCCCCC
Confidence            3688999999999999999999999999874

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.93  E-value=5.9e-06  Score=52.36  Aligned_cols=32  Identities=22%  Similarity=0.258  Sum_probs=28.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emi_A           14 ECSECGKAFIQKSTLSMHQRIHRGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGCSCCCCSCCC
T ss_pred             CCCCCCcccCCHHHHHHHHhHhCCCCCCCCCC
Confidence            36889999999999999999999999999874

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.92  E-value=4.7e-06  Score=52.60  Aligned_cols=32  Identities=19%  Similarity=0.337  Sum_probs=28.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|.....|..|+++|.+++++.|++
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (45)
T 2epu_A           14 ECTHCGKSFRAKGNLVTHQRIHTGEKSGPSSG   45 (45)
T ss_dssp             EETTTTEEESSHHHHHHHHTTTSSCCCCCSCC
T ss_pred             cCCCCCCccCChHHHHHHHHHhCCCCCCCCCC
Confidence            36889999999999999999999999999873

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.92  E-value=5.3e-06  Score=52.52  Aligned_cols=32  Identities=25%  Similarity=0.443  Sum_probs=29.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2ytf_A           14 ECSECQKAFNTKSNLIVHQRTHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHTSCSSSSSCCCC
T ss_pred             CCCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36889999999999999999999999999974

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.92  E-value=4.8e-07  Score=52.93  Aligned_cols=30  Identities=33%  Similarity=0.523  Sum_probs=27.6

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCCCC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~   44 (342)
                      +||+|+.|++.|.+++.|..|+++  |+++++
T Consensus         1 kp~~C~~C~k~f~~~~~L~~H~~~--H~~~kp   30 (32)
T 2kfq_A            1 YAFACPACPKRFMRSDALSKHIKT--AFIVVA   30 (32)
T ss_dssp             CCSSSSSSCTTHHHHHTTSSSTTS--SSSSSS
T ss_pred             CCCCCCCCCcccCCHHHHHHHHHH--HccCCC
Confidence            589999999999999999999999  888765

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=97.92  E-value=5.2e-06  Score=52.65  Aligned_cols=32  Identities=22%  Similarity=0.299  Sum_probs=28.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emj_A           14 ECAECGKSFSISSQLATHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHHTTSCSSSSCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36889999999999999999999999999974

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.91  E-value=6.2e-06  Score=52.28  Aligned_cols=32  Identities=22%  Similarity=0.375  Sum_probs=28.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em6_A           14 KCDVCGKEFSQSSHLQTHQRVHTGEKPSGPSS   45 (46)
T ss_dssp             BCSSSCCBCSSHHHHHHHHTTTSSSCCCCTTC
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            46889999999999999999999999999874

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=97.14  E-value=1.4e-06  Score=49.49  Aligned_cols=29  Identities=28%  Similarity=0.571  Sum_probs=26.4

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      ++||+|+.|++.|..+..|..|+++  |+++
T Consensus         1 ~k~~~C~~C~k~f~~~~~l~~H~~~--h~~~   29 (30)
T 2lvr_A            1 MKPYVCIHCQRQFADPGALQRHVRI--HTGE   29 (30)
Confidence            4799999999999999999999999  7754

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.91  E-value=5.4e-06  Score=52.49  Aligned_cols=32  Identities=31%  Similarity=0.373  Sum_probs=29.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eow_A           14 KCNECGKAFRARSSLAIHQATHSGEKPSGPSS   45 (46)
T ss_dssp             ECTTSCCEESSHHHHHHHHHHHCCCSCSCTTC
T ss_pred             eccccCChhcCHHHHHHHHHHcCCCCCCCCCC
Confidence            36889999999999999999999999999974

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.91  E-value=5.9e-06  Score=52.38  Aligned_cols=32  Identities=28%  Similarity=0.393  Sum_probs=28.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2en9_A           14 KCNECKKTFTQSSSLTVHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHHTSSCCCSCCC
T ss_pred             ECCccCcccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36889999999999999999999999999974

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.91  E-value=5.4e-06  Score=52.59  Aligned_cols=32  Identities=28%  Similarity=0.380  Sum_probs=28.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|...+.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2em4_A           14 ECIECGKAFKTKSSLICHRRSHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHSSSSCCCCCC
T ss_pred             CCCCCCCccCCHHHHHHHHHhcCCCCCCCCCC
Confidence            36889999999999999999999999999974

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.90  E-value=6e-06  Score=52.26  Aligned_cols=32  Identities=19%  Similarity=0.329  Sum_probs=28.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2yrj_A           14 RCGECGKAFAQKANLTQHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTSSCCSSCSCC
T ss_pred             ECCCCCCccCCHHHHHHHHHHcCCCCCCCCCC
Confidence            36889999999999999999999999999874

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.90  E-value=4.9e-06  Score=47.02  Aligned_cols=29  Identities=17%  Similarity=0.305  Sum_probs=26.0

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCCC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~   43 (342)
                      +||+|+.|++.|.....|..|+++  |++++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~--h~~~~   29 (30)
T 1klr_A            1 KTYQCQYCEFRSADSSNLKTHIKT--KHSKE   29 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHH--HTSSC
T ss_pred             CCccCCCCCCccCCHHHHHHHHHH--HccCC
Confidence            589999999999999999999999  76654

>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ...

Probab=97.90  E-value=3.6e-06  Score=82.40  Aligned_cols=122  Identities=14%  Similarity=0.098  Sum_probs=88.8

Q ss_pred             CCCCcceecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 019380          121 CRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  200 (342)
Q Consensus       121 ~~~~~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~  200 (342)
                      .+..+.+++|+|+.+.+.-.. ++ ..+.+-. .+ ..|  ++                .           ++++.|.+|
T Consensus         7 ~~~p~~valDtE~~~~~~~~a-~L-vgi~la~-~~-~a~--~i----------------~-----------~~l~~l~~~   53 (540)
T 4dfk_A            7 WPPPEGAFVGFVLSRKEPMWA-DL-LALAAAR-GG-RVH--RA----------------P-----------EPYKALRDL   53 (540)
T ss_dssp             SCCCTTCEEEEEESSSCTTTC-CE-EEEEEEE-TT-EEE--EC----------------S-----------SHHHHHTTC
T ss_pred             CCCCCceEEEEEecCCccCcc-cE-EEEEEEc-CC-EEE--Ee----------------h-----------hhHHHHHHH
Confidence            445578999999998753322 22 3344422 22 222  11                0           356788888


Q ss_pred             HhcCCCccccccCCCCCeEEEeeCchhhhhhccccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCCCCCcH
Q 019380          201 LNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPY  280 (342)
Q Consensus       201 l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~A~  280 (342)
                      +              ++.++|+||+.||+.-.++..+  .++||+..+..+.|.  +++|++|++.|++. +   .|.|.
T Consensus        54 l--------------~d~~kV~hn~K~Dl~~~Gi~~~--~~fDT~laAyLL~p~--~~~L~~La~~yl~~-~---gk~a~  111 (540)
T 4dfk_A           54 K--------------EARGLLAKDLSVLALREGLGLP--PGDDPMLLAYLLDPS--NTTPEGVARRYGGE-W---TEEAG  111 (540)
T ss_dssp             S--------------SBCSTTHHHHHHHHHHTTCCCC--BCCCHHHHHHHHCTT--CCCHHHHHHHHTSC-C---CSCHH
T ss_pred             H--------------cCCCEEEeccHHHHHHcCCCCC--cceeHHHHHHHhCCC--CCCHHHHHHHHhhh-h---ccchH
Confidence            8              5578899999999993333333  578999999999887  89999999999776 2   47899


Q ss_pred             HHHHHHHHHHHHHHhhh
Q 019380          281 EDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       281 ~Da~~t~~l~~~~~~~~  297 (342)
                      +||.++++||..+..+.
T Consensus       112 ~DA~~t~~L~~~L~~~L  128 (540)
T 4dfk_A          112 ERAALSERLFANLWGRL  128 (540)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999998876

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.90  E-value=7.1e-06  Score=50.74  Aligned_cols=30  Identities=30%  Similarity=0.443  Sum_probs=26.5

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~  109 (342)
                      .|+.|+++|..++.|..|+++|.+++|+.|
T Consensus        13 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2ytb_A           13 RCDQCGKAFSQKGSLIVHIRVHTGSGPSSG   42 (42)
T ss_dssp             CCTTTTCCBSSHHHHHTTGGGTSCCSCCCC
T ss_pred             eCCCccchhCCHHHHHHHHHHhCCCCCCCC
Confidence            367889999999999999999999999876

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.89  E-value=6e-06  Score=51.71  Aligned_cols=31  Identities=19%  Similarity=0.354  Sum_probs=27.4

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~  110 (342)
                      .|+.|+++|..++.|..|+++|.+++++.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eoj_A           14 ECCECGKVFSRKDQLVSHQKTHSGQSGPSSG   44 (44)
T ss_dssp             EETTTTEECSSHHHHHHHHTTSSSSCSCCCC
T ss_pred             eCCCCCCccCCHHHHHHHHHHcCCCCCCCCC
Confidence            3678899999999999999999999998874

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=7.1e-06  Score=50.55  Aligned_cols=30  Identities=27%  Similarity=0.367  Sum_probs=27.2

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~  109 (342)
                      .|+.|++.|...+.|..|+++|.+++|+.|
T Consensus        12 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C   41 (41)
T 2ept_A           12 ECQECGKSFRQKGSLTLHERIHTGSGPSSG   41 (41)
T ss_dssp             ECSSSCCEESSHHHHHHHGGGCCCCSCSCC
T ss_pred             ECCCCCCCcCCHHHHHHHHHHhCCCCCcCC
Confidence            368899999999999999999999999876

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.10  E-value=1.7e-06  Score=48.86  Aligned_cols=28  Identities=32%  Similarity=0.632  Sum_probs=25.7

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      +||+|+.|++.|..+..|..|+++  |+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~--H~~~   28 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQASSLIAHVRQ--HTGE   28 (29)
Confidence            589999999999999999999999  7764

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.88  E-value=5.4e-06  Score=52.48  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=28.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|...+.|..|+++|.+++|+.|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~kp~~C~~   45 (46)
T 2eor_A           14 NCEECGKAFIHDSQLQEHQRIHTGEKPSGPSS   45 (46)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHHSCCCSSSTT
T ss_pred             cCCCCCCCcCCHHHHHHHHHhcCCCCCCCCCC
Confidence            36789999999999999999999999999974

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.88  E-value=7e-06  Score=51.48  Aligned_cols=31  Identities=26%  Similarity=0.364  Sum_probs=28.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~  110 (342)
                      .|+.|++.|...+.|..|+++|.+++++.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (44)
T 2eou_A           14 ECQECGKIFRHSSLLIEHQALHAGESGPSSG   44 (44)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHTTSCCCCCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHHCCCCCCCCC
Confidence            4688999999999999999999999999874

>4gmj_B CCR4-NOT transcription complex subunit 7; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens}

Probab=97.87  E-value=8.1e-05  Score=66.64  Aligned_cols=158  Identities=13%  Similarity=0.113  Sum_probs=96.5

Q ss_pred             CcceecccccccccCC-----------------------CcccccceEEeecCCCCe-------EEeeecCCCCCcc-cc
Q 019380          124 PKAVAMDCEMVGGGSN-----------------------GTLDLCARVCLVDEDENV-------IFHTYVQPQLPVT-NY  172 (342)
Q Consensus       124 ~~~v~~D~Ettg~~~~-----------------------~~~~il~~v~vv~~~~~~-------~~~~lv~p~~~i~-~~  172 (342)
                      -+||++|+|++|+...                       .++++  .+++.+.+|+.       .|+-.+.+...+- +.
T Consensus        34 ~~fVAiDtEFpGvv~rp~~~~~~t~d~~Y~~lr~nvd~l~iIQl--GLt~f~~~g~~p~~~~~wqFNF~f~~~~d~~~~~  111 (285)
T 4gmj_B           34 YNYVAMDTEFPGVVARPIGEFRSNADYQYQLLRCNVDLLKIIQL--GLTFMNEQGEYPPGTSTWQFNFKFNLTEDMYAQD  111 (285)
T ss_dssp             CCEEEEEEECCCCCCCCTTCCTTSTTHHHHHHHHHHTTSCCCEE--EEEEECTTSCCCSSCCEEEEEBCCCTTTSCCCHH
T ss_pred             CCEEEEEEEecCccCCCCCccCCCHHHHHHHHHHHHHhhcceeE--EEEeeccCCCcCCCeeEEEEEEEeccccccccHH
Confidence            3599999999996421                       12333  45666666543       2444444443211 11


Q ss_pred             ccc---cCCCCHhhh-cCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc---------------
Q 019380          173 RYE---VTGLTEEDI-KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR---------------  233 (342)
Q Consensus       173 ~~~---i~GIt~e~l-~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~---------------  233 (342)
                      +..   -+||.=... .++.+..+..+.+..    .-.++      ..+..+|.|+..+|+.+|-               
T Consensus       112 SI~fL~~~G~DF~k~~~~GI~~~~f~ell~~----sglvl------~~~v~WvtfH~~yDf~yL~k~lt~~~LP~~~~eF  181 (285)
T 4gmj_B          112 SIELLTTSGIQFKKHEEEGIETQYFAELLMT----SGVVL------CEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDF  181 (285)
T ss_dssp             HHHHHHHHTCCHHHHHHHCBCHHHHHHHHHT----SSSSS------CTTCEEEESSCHHHHHHHHHHHHTSCCCSSHHHH
T ss_pred             HHHHHHHcCCCHHHHHHcCCCHHHHHHHHHH----hHHHh------cCCCceEEecchhhHHHHHHHHhCCCCCCCHHHH
Confidence            111   156654443 245555443333322    11111      2556777777779998876               


Q ss_pred             -----ccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhh
Q 019380          234 -----MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       234 -----~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~  298 (342)
                           .-+|.  +.|+..+.+....  .+-+|++||+.+ |++--+..|.|-.|+..|+.+|.++++..-
T Consensus       182 ~~~l~~~FP~--vYD~K~l~~~~~~--l~ggL~~lA~~L-~v~r~g~~HqAGsDSllT~~~F~kl~~~~f  246 (285)
T 4gmj_B          182 FEILRLFFPV--IYDVKYLMKSCKN--LKGGLQEVAEQL-ELERIGPQHQAGSDSLLTGMAFFKMREMFF  246 (285)
T ss_dssp             HHHHHHHCSC--EEEHHHHGGGSTT--CCSCHHHHHHHT-TCCCCSCTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCch--hhhHHHHHHhccc--cCChHHHHHHhC-CCCCCCCCCcchhHHHHHHHHHHHHHHHHh
Confidence                 11343  7888888776643  346899999998 988444489999999999999999988753

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.86  E-value=7.4e-06  Score=51.24  Aligned_cols=31  Identities=23%  Similarity=0.419  Sum_probs=27.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~  110 (342)
                      .|+.|++.|...+.|..|+++|.+++++.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eof_A           14 ECNECQKAFNTKSNLMVHQRTHTGESGPSSG   44 (44)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHTTTSSCSCCC
T ss_pred             ECCCCCcccCCHhHHHHHHHHhCCCCCCCCC
Confidence            3688999999999999999999999999874

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.86  E-value=8.2e-06  Score=45.01  Aligned_cols=26  Identities=31%  Similarity=0.581  Sum_probs=23.6

Q ss_pred             cccccccccccCCHHHHHHHHhhhccCC
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHSV   41 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~~   41 (342)
                      ||+|+.|++.|..+..|..|+++  |++
T Consensus         1 ~~~C~~C~k~f~~~~~l~~H~~~--h~~   26 (27)
T 1znf_A            1 XYKCGLCERSFVEKSALSRHQRV--HKN   26 (27)
T ss_dssp             -CBCSSSCCBCSSHHHHHHHGGG--TCC
T ss_pred             CccCCCCCCcCCCHHHHHHHHHH--cCC
Confidence            69999999999999999999999  765

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.86  E-value=5.6e-06  Score=46.96  Aligned_cols=28  Identities=43%  Similarity=0.714  Sum_probs=25.3

Q ss_pred             CcccccccccccCCHHHHHHH-HhhhccCCC
Q 019380           13 ARHKCVACYKQFKRKDHLIEH-MKISYHSVH   42 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H-~~~~~H~~~   42 (342)
                      +||+|+.|++.|.++..|..| +++  |+++
T Consensus         1 k~~~C~~C~k~f~~~~~l~~H~~~~--H~~~   29 (30)
T 1paa_A            1 KAYACGLCNRAFTRRDLLIRHAQKI--HSGN   29 (30)
T ss_dssp             CCSBCTTTCCBCSSSHHHHHHHTTT--SCCC
T ss_pred             CCcCCcccCcccCChHHHHHHHHHH--ccCC
Confidence            589999999999999999999 688  8765

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=97.86  E-value=8.2e-06  Score=47.84  Aligned_cols=29  Identities=24%  Similarity=0.304  Sum_probs=26.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~  108 (342)
                      .|+.|++.|...++|..|+++|.+++++.
T Consensus         4 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~   32 (33)
T 1rim_A            4 ACPECPKRFMRSDHLSKHITLHELLGEER   32 (33)
T ss_dssp             CCSSSCCCCSSHHHHHHHHHHHTTTCCCC
T ss_pred             cCCCCCchhCCHHHHHHHHHHhCCCCCCC
Confidence            47899999999999999999999999874

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.86  E-value=3.8e-06  Score=47.11  Aligned_cols=28  Identities=39%  Similarity=0.750  Sum_probs=25.6

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      +||+|+.|++.|.....|..|+++  |+++
T Consensus         1 k~~~C~~C~~~f~~~~~l~~H~~~--h~~~   28 (29)
T 2m0e_A            1 KEHKCPHCDKKFNQVGNLKAHLKI--HIAD   28 (29)
T ss_dssp             CCCCCSSCCCCCCTTTHHHHHHHH--HHSC
T ss_pred             CCCcCCCCCcccCCHHHHHHHHHH--hccC
Confidence            589999999999999999999999  7654

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.86  E-value=9e-06  Score=50.27  Aligned_cols=31  Identities=16%  Similarity=0.430  Sum_probs=27.5

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~  110 (342)
                      .|+.|+++|..++.|..|+++|.+++++.|.
T Consensus        12 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   42 (42)
T 2yte_A           12 SCAECKETFSDNNRLVQHQKMHTVKSGPSSG   42 (42)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHTSCCSSCCCC
T ss_pred             ECCCCCCccCCHHHHHHHHHHhCCCCCCCCC
Confidence            4688999999999999999999999998874

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.85  E-value=9.1e-06  Score=50.90  Aligned_cols=31  Identities=19%  Similarity=0.398  Sum_probs=27.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~  110 (342)
                      .|+.|++.|...+.|..|+++|.+++++.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2emb_A           14 ECSKCQATFNLRKHLIQHQKTHAAKSGPSSG   44 (44)
T ss_dssp             ECTTTCCEESCHHHHHHHGGGGCCCCCTTCC
T ss_pred             ECCCCCCccCCHHHHHHHHHHcCCCCCcCCC
Confidence            3688999999999999999999999999874

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=97.84  E-value=8.8e-06  Score=50.31  Aligned_cols=30  Identities=33%  Similarity=0.544  Sum_probs=27.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~  109 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|
T Consensus        13 ~C~~C~k~f~~~~~l~~H~~~H~~~k~~~C   42 (42)
T 2epc_A           13 LCGQCGKSFTQRGSLAVHQRSCSQSGPSSG   42 (42)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHTTCCCCCCC
T ss_pred             ECCCCCcccCCHHHHHHHhhhcCCCCCCCC
Confidence            368899999999999999999999999876

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.84  E-value=8.9e-06  Score=51.52  Aligned_cols=32  Identities=22%  Similarity=0.353  Sum_probs=28.5

Q ss_pred             cccccccccCChhhHHHHHhhcCC-CCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSL-SAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~-~~~~~~~~  111 (342)
                      .|+.|+++|...+.|..|+++|.+ ++++.|++
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~~C~~   46 (46)
T 2eoy_A           14 KCNKCEKTFSCSKYLTQHERIHTRGVKSGPSSG   46 (46)
T ss_dssp             ECSSSCCEESSSHHHHHHHTTCCSCCTTSSSCC
T ss_pred             ECcCCCCcCCCHHHHHHHHHHcCCCCCCCCCCC
Confidence            368899999999999999999999 99999863

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.83  E-value=7.7e-06  Score=51.83  Aligned_cols=32  Identities=19%  Similarity=0.261  Sum_probs=28.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|++++++.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~~   45 (46)
T 2eoz_A           14 SCNVCGKAFVLSAHLNQHLRVHTQETLSGPSS   45 (46)
T ss_dssp             EETTTTEEESSHHHHHHHHHHHSSCCSSSCCC
T ss_pred             ECcccChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            36889999999999999999999999999874

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.82  E-value=9.1e-06  Score=50.33  Aligned_cols=30  Identities=23%  Similarity=0.350  Sum_probs=26.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~  109 (342)
                      .|+.|+++|..++.|..|+++|.+++|+.|
T Consensus        13 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2eos_A           13 PCEICGTRFRHLQTLKSHLRIHTGSGPSSG   42 (42)
T ss_dssp             CCSSSCCCBSSHHHHHHHTTTTSCCSSTTC
T ss_pred             ECCCCCCccCCHHHHHHHHHhcCCCCCCCC
Confidence            368889999999999999999999999876

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.82  E-value=9.4e-06  Score=51.32  Aligned_cols=32  Identities=28%  Similarity=0.377  Sum_probs=28.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2eq3_A           14 ECNQCGKAFSVRSSLTTHQAIHTGKKPSGPSS   45 (46)
T ss_dssp             EETTTTEECSSHHHHHHHHTTSCCCCCCCSCC
T ss_pred             ECCCCChhhCCHHHHHHHHHHhCCCCCCCCCC
Confidence            46889999999999999999999999999873

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.82  E-value=8.8e-06  Score=51.57  Aligned_cols=31  Identities=19%  Similarity=0.239  Sum_probs=28.2

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~  110 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~   44 (46)
T 2yto_A           14 KCSDCGKAFTRKSGLHIHQQSHTGERHSGPS   44 (46)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHTCCCBTTTB
T ss_pred             ECcccCCccCCHhHHHHHHHHcCCCCCCCCC
Confidence            3688999999999999999999999999987

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=97.81  E-value=1e-06  Score=60.23  Aligned_cols=44  Identities=18%  Similarity=0.280  Sum_probs=25.7

Q ss_pred             HHHHhhhccCCCCC-ccccCccccCChhhhh-hhc-CCCcccCCCCCcc
Q 019380           31 IEHMKISYHSVHQP-KCAVCQKLSKSFESLR-EHL-TGPLSKAHCSGIF   76 (342)
Q Consensus        31 ~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~-~H~-~~~~~C~~C~k~f   76 (342)
                      ..|+++  |+++++ .|..|++.|.....|. .|. .++|.|+.|++.|
T Consensus         3 ~~h~~~--H~~~k~~~C~~C~k~F~~~~~l~~~H~~~k~~~C~~C~k~f   49 (62)
T 1vd4_A            3 ETDERD--STNRASFKCPVCSSTFTDLEANQLFDPMTGTFRCTFCHTEV   49 (62)
T ss_dssp             CCCSSS--CCSSSEEECSSSCCEEEHHHHHHHEETTTTEEBCSSSCCBC
T ss_pred             hhHHHH--cCCCCCccCCCCCchhccHHHhHhhcCCCCCEECCCCCCcc
Confidence            346666  777776 7777777777766654 121 3455554444433

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.81  E-value=1.1e-05  Score=50.57  Aligned_cols=31  Identities=16%  Similarity=0.379  Sum_probs=27.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~  110 (342)
                      .|+.|++.|..++.|..|+++|.+++++.|+
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2yu5_A           14 KCSKCDRVFTQRNYLVQHERTHARKSGPSSG   44 (44)
T ss_dssp             ECSSSSCEESSSHHHHHHHHHCCCCCSSCCC
T ss_pred             ECCCCCchhCCHHHHHHHhHhcCCCCCCCCC
Confidence            3688999999999999999999999998874

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=97.02  E-value=2.7e-06  Score=46.78  Aligned_cols=24  Identities=25%  Similarity=0.524  Sum_probs=22.9

Q ss_pred             CcccccccccccCCHHHHHHHHhh
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      |||+|+.|++.|..+..|..|+++
T Consensus         1 kp~~C~~C~k~f~~~~~l~~H~~~   24 (26)
T 2lvu_A            1 KPYVCERCGKRFVQSSQLANHIRH   24 (26)
Confidence            589999999999999999999998

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=97.80  E-value=8.3e-06  Score=57.44  Aligned_cols=38  Identities=26%  Similarity=0.401  Sum_probs=34.5

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDE  117 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~~  117 (342)
                      .|+.|++.|.....|..|+++|++++++.|+.|++...
T Consensus        19 ~C~~C~k~f~~~~~l~~H~~~H~~~~~~~C~~C~k~f~   56 (74)
T 2lce_A           19 KCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFN   56 (74)
T ss_dssp             CCTTSSCCBSCHHHHHHHHHHHCCCCSEECTTTCCEES
T ss_pred             ECCCCCceeCCHHHHHHHHHHcCCCCCEECCCCCchhC
Confidence            47889999999999999999999999999999987644

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.80  E-value=1.7e-05  Score=55.01  Aligned_cols=30  Identities=20%  Similarity=0.205  Sum_probs=27.0

Q ss_pred             cccccccCChhhHHHHH-hhcCCCCCCCCcc
Q 019380           82 NLCMNIFDSPSSLIKHK-EACSLSAPVPFKI  111 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~-~~h~~~~~~~~~~  111 (342)
                      +.|+++|.++++|.+|+ ++|++++|+.|..
T Consensus        33 ~~CgKaFsr~s~L~~H~rriHTgEKP~~~~~   63 (73)
T 1x3c_A           33 QGCFAAFTIQQNLILHYQAVHKSDLPAFSAE   63 (73)
T ss_dssp             TTCCCBCSSHHHHHHHHHHHSSSCCCCCCCS
T ss_pred             CCcChhHcCHHHHHHHhhhhCCCCCCccccc
Confidence            45999999999999998 6899999999875

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.79  E-value=1.3e-05  Score=51.11  Aligned_cols=32  Identities=22%  Similarity=0.294  Sum_probs=29.2

Q ss_pred             cc--ccccccCChhhHHHHHhhcCCCCCCCCccc
Q 019380           81 CN--LCMNIFDSPSSLIKHKEACSLSAPVPFKIS  112 (342)
Q Consensus        81 C~--~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c  112 (342)
                      |.  .|++.|..++.|..|+++|.+++|+.|+.|
T Consensus        15 C~~~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~C   48 (48)
T 2ent_A           15 CTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSSG   48 (48)
T ss_dssp             CCSSSCCCEESSHHHHHHHHTTSCCCCSCSSCCC
T ss_pred             CCCCCCCCccCCHHHHHHHHHHhCCCCCCCCCCC
Confidence            55  799999999999999999999999999876

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.76  E-value=8.7e-06  Score=51.58  Aligned_cols=32  Identities=25%  Similarity=0.207  Sum_probs=28.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~  111 (342)
                      .|+.|++.|...+.|..|+++|.+++++.|+.
T Consensus        14 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~C~~   45 (46)
T 2emz_A           14 KCNECGKGFGRRSHLAGHLRLHSREKSSGPSS   45 (46)
T ss_dssp             CCSSSCCCCSSHHHHHHHHHHHHHTTCCCSCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHhCCCCCCCCCC
Confidence            46889999999999999999999999999873

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=97.75  E-value=1.8e-05  Score=56.16  Aligned_cols=36  Identities=31%  Similarity=0.570  Sum_probs=32.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCC-cc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KC   46 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C   46 (342)
                      .++++||+|+.|++.|..+..|..|+++  |+++++ .|
T Consensus        41 h~~~~~~~C~~C~~~f~~~~~L~~H~~~--H~~~~p~~C   77 (77)
T 2cot_A           41 HTGEKPYKCDECGKAFIQRSHLIGHHRV--HTGSGPSSG   77 (77)
T ss_dssp             TCCSCSEECSSSCCEESSHHHHHHHGGG--SCCCCCCCC
T ss_pred             cCCCcCeeCCCCCCccCCHHHHHHHHHH--hCCCCCCCC
Confidence            3578899999999999999999999999  888876 55

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.75  E-value=9.6e-06  Score=50.19  Aligned_cols=30  Identities=23%  Similarity=0.234  Sum_probs=26.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~  109 (342)
                      .|+.|+++|...+.|..|+++|.+++|+.|
T Consensus        13 ~C~~C~k~f~~~~~L~~H~~~H~~~~~~~C   42 (42)
T 2en2_A           13 KCETCGARFVQVAHLRAHVLIHTGSGPSSG   42 (42)
T ss_dssp             ECTTTCCEESSHHHHHHHTHHHHSCCSSCC
T ss_pred             eCCCcChhhCCHHHHHHHHHHcCCCCCCCC
Confidence            367889999999999999999999999876

>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A

Probab=97.74  E-value=8e-05  Score=70.76  Aligned_cols=83  Identities=22%  Similarity=0.268  Sum_probs=64.1

Q ss_pred             CCCeEEEeeCchhhhhhcc--ccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCCC---------------C
Q 019380          215 GKARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV---------------H  277 (342)
Q Consensus       215 ~~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~---------------H  277 (342)
                      +.+.+-||||+.+|+.+|.  .......++||+..+..+.+.  +++|+.|++.|||+.+..+.               .
T Consensus       180 dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~--~~gL~~Lv~~~Lg~~l~K~~~~sdW~~rpLs~~q~~  257 (428)
T 3saf_A          180 DPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLG--RHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLS  257 (428)
T ss_dssp             CTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCS--CCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHH
T ss_pred             CCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCC--CCCHHHHHHHHcCCCCCccccccccccCCCCHHHHH
Confidence            3566889999999999995  333234488999877776543  58999999999999876541               2


Q ss_pred             CcHHHHHHHHHHHHHHHhhhhh
Q 019380          278 DPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       278 ~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      -|..||..+..||..+..+..+
T Consensus       258 YAA~DA~~ll~L~~~L~~~L~~  279 (428)
T 3saf_A          258 YARDDTHYLLYIYDKMRLEMWE  279 (428)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            2568999999999999887654

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.74  E-value=1.1e-05  Score=57.45  Aligned_cols=49  Identities=18%  Similarity=0.224  Sum_probs=33.0

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (342)
                      .++||+.|+.|++.|. ...|..|+ .  |.+.++ .|..|++.|.. ..|..|+
T Consensus        13 c~~r~~~C~~C~~~~~-~~~L~~H~-~--~c~~~~~~C~~C~~~~~~-~~l~~H~   62 (75)
T 2d9k_A           13 CPLRLAVCQHCDLELS-ILKLKEHE-D--YCGARTELCGNCGRNVLV-KDLKTHP   62 (75)
T ss_dssp             CCCCCEECSSSCCEEC-HHHHHHHH-H--HHHHCEEECSSSCCEEET-TGGGTHH
T ss_pred             CCCcccCCcccChHhh-HHHHHHHH-h--HcCCCceEcccCCCcCcH-HHHHHHH
Confidence            5778888888888884 77888888 6  666665 56656555442 4455453

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.70  E-value=1.2e-05  Score=50.36  Aligned_cols=31  Identities=19%  Similarity=0.307  Sum_probs=27.5

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~  110 (342)
                      .|+.|++.|...+.|..|+++|.+++|+.|.
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (44)
T 2eox_A           14 NCNECGKAFTRIFHLTRHQKIHTRKSGPSSG   44 (44)
T ss_dssp             EETTTTEEESSSHHHHTTHHHHCCCCCCSCC
T ss_pred             ECcccCcccCCHHHHHHHHHHhCCCCCCCCC
Confidence            3688999999999999999999999998873

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=1.1e-05  Score=50.99  Aligned_cols=31  Identities=26%  Similarity=0.337  Sum_probs=28.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~  110 (342)
                      .|+.|++.|...+.|..|+++|.+++++.|+
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~~~~~C~   44 (46)
T 2en3_A           14 QCKECGMNFSWSCSLFKHLRSHERTDPSGPS   44 (46)
T ss_dssp             ECSSSCCEESSSHHHHHHHHHHHHSCCSSCS
T ss_pred             eCcccChhhCCHHHHHHHHHHhCCCCCCCCC
Confidence            3688999999999999999999999999986

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=97.69  E-value=2.4e-05  Score=49.01  Aligned_cols=30  Identities=27%  Similarity=0.260  Sum_probs=26.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~  109 (342)
                      .|+.|++.|...+.|..|+++|.+++|+.|
T Consensus        14 ~C~~C~k~F~~~~~L~~H~~~H~~~k~~~~   43 (44)
T 2epv_A           14 ECNECGKAFIWKSLLIVHERTHAGVSGPSS   43 (44)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGSSCSCCCC
T ss_pred             ECCCCCcccCchHHHHHHHhHhcCCCCCCC
Confidence            368899999999999999999999999876

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=97.68  E-value=2.2e-05  Score=47.66  Aligned_cols=30  Identities=20%  Similarity=0.274  Sum_probs=27.2

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~  109 (342)
                      .|+.|++.|...+.|..|+++|.+++++.+
T Consensus         8 ~C~~C~k~f~~~~~L~~H~~~H~~~k~~~~   37 (39)
T 1njq_A            8 TCSFCKREFRSAQALGGHMNVHRRDRARLR   37 (39)
T ss_dssp             ECTTTCCEESSHHHHHHHHHTTCCSCTTTT
T ss_pred             ECCCCCcccCCHHHHHHHHHHcCCCcccee
Confidence            478899999999999999999999999864

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.61  E-value=8.6e-06  Score=52.06  Aligned_cols=32  Identities=25%  Similarity=0.578  Sum_probs=28.4

Q ss_pred             CCCCCccccc--ccccccCCHHHHHHHHhhhccCCC
Q 019380            9 KRSTARHKCV--ACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus         9 ~~~~~~~~C~--~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      .++++||+|+  .|++.|..++.|..|+++  |+++
T Consensus        13 H~~~k~~~C~~~~C~k~F~~~~~L~~H~~~--H~~e   46 (47)
T 1ncs_A           13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQT--HLED   46 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHH--HTTT
T ss_pred             cCCCCCeECCCCCCCCccCCHHHHHHHHHH--ccCC
Confidence            3578999995  799999999999999999  8765

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=97.60  E-value=3.1e-05  Score=43.26  Aligned_cols=27  Identities=30%  Similarity=0.508  Sum_probs=24.7

Q ss_pred             Cccccc--ccccccCCHHHHHHHHhhhccCC
Q 019380           13 ARHKCV--ACYKQFKRKDHLIEHMKISYHSV   41 (342)
Q Consensus        13 ~~~~C~--~C~k~f~~~~~L~~H~~~~~H~~   41 (342)
                      +||+|+  .|++.|..++.|..|+++  |++
T Consensus         1 k~~~C~~~~C~k~f~~~~~l~~H~~~--H~~   29 (29)
T 2ab3_A            1 MVYVCHFENCGRSFNDRRKLNRHKKI--HTG   29 (29)
T ss_dssp             CCEEECSTTTCEEESSHHHHHHHHGG--GTC
T ss_pred             CCCCCcCCcCcCccCCHHHHHHHHHH--hCC
Confidence            589999  999999999999999999  763

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=97.55  E-value=4e-05  Score=45.02  Aligned_cols=27  Identities=30%  Similarity=0.424  Sum_probs=23.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~  106 (342)
                      .|+.|++.|..++.|..|++.|++++|
T Consensus         9 ~C~~C~k~f~~~~~L~~H~~~h~~~kp   35 (35)
T 2elx_A            9 VCALCLKKFVSSIRLRSHIREVHGAAQ   35 (35)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHTSCTTC
T ss_pred             ECCCCcchhCCHHHHHHHHHHHcCCCC
Confidence            478899999999999999999998764

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=97.52  E-value=7e-06  Score=47.72  Aligned_cols=28  Identities=21%  Similarity=0.430  Sum_probs=25.5

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPV  107 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~  107 (342)
                      .|+.|+++|..+++|..|+++|.+++|+
T Consensus         4 ~C~~C~k~f~~~~~L~~H~~~H~~~kp~   31 (32)
T 2kfq_A            4 ACPACPKRFMRSDALSKHIKTAFIVVAL   31 (32)
T ss_dssp             SSSSSCTTHHHHHTTSSSTTSSSSSSSC
T ss_pred             CCCCCCcccCCHHHHHHHHHHHccCCCC
Confidence            4789999999999999999999999875

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=97.48  E-value=5.8e-05  Score=41.37  Aligned_cols=25  Identities=28%  Similarity=0.522  Sum_probs=21.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      .|+.|++.|..++.|..|+++|.++
T Consensus         3 ~C~~C~k~f~~~~~l~~H~~~h~~~   27 (27)
T 1znf_A            3 KCGLCERSFVEKSALSRHQRVHKNX   27 (27)
T ss_dssp             BCSSSCCBCSSHHHHHHHGGGTCC-
T ss_pred             cCCCCCCcCCCHHHHHHHHHHcCCC
Confidence            4789999999999999999998763

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=97.46  E-value=6.4e-05  Score=44.17  Aligned_cols=27  Identities=15%  Similarity=0.471  Sum_probs=23.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~  106 (342)
                      .|+.|++.|...+.|..|+++|.+++|
T Consensus         9 ~C~~C~k~f~~~~~l~~H~~~H~~~~~   35 (35)
T 1srk_A            9 VCRICLSAFTTKANCARHLKVHTDTLS   35 (35)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGTSCCC
T ss_pred             eCCCCCcccCCHHHHHHHHHHcCCCCC
Confidence            468899999999999999999998764

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=97.45  E-value=6.2e-05  Score=42.18  Aligned_cols=27  Identities=19%  Similarity=0.226  Sum_probs=24.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~  106 (342)
                      .|+.|++.|...+.|..|+++|+++++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~h~~~~~   30 (30)
T 1klr_A            4 QCQYCEFRSADSSNLKTHIKTKHSKEK   30 (30)
T ss_dssp             CCSSSSCCCSCSHHHHHHHHHHTSSCC
T ss_pred             cCCCCCCccCCHHHHHHHHHHHccCCC
Confidence            478999999999999999999998753

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.45  E-value=5e-05  Score=45.30  Aligned_cols=27  Identities=15%  Similarity=0.358  Sum_probs=23.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~  106 (342)
                      .|+.|++.|..+++|..|+++|++++|
T Consensus        11 ~C~~C~k~f~~~~~l~~H~~~h~~~kp   37 (37)
T 2elo_A           11 SCPVCEKSFSEDRLIKSHIKTNHPEVS   37 (37)
T ss_dssp             EETTTTEECSSHHHHHHHHHHHCSSCC
T ss_pred             CCCCCCCccCCHHHHHHHHHHHcCCCC
Confidence            468899999999999999999998764

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.44  E-value=0.00016  Score=53.11  Aligned_cols=52  Identities=15%  Similarity=0.056  Sum_probs=40.8

Q ss_pred             CcccCCCCCcccCCcccccccccCChhhHHHHHhh-cCCCCC--------CCCcccccccc
Q 019380           66 PLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEA-CSLSAP--------VPFKISGAIDE  117 (342)
Q Consensus        66 ~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~-h~~~~~--------~~~~~c~~~~~  117 (342)
                      .+.|......+....|+.|++.|.....|..|++. |.++++        +.|+.|++...
T Consensus        13 ~~~c~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~H~~~~~~~~~~c~~~~C~~C~k~f~   73 (95)
T 2ej4_A           13 ELSCKWIDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFK   73 (95)
T ss_dssp             CCCCCCCCSSCSSSSCCCCCCCCSSHHHHHHHHHHTTTCCTTCSCCCCCCTTCSSTTCCCS
T ss_pred             CceeEeecCCcCCCcccccccccCCHHHHHHHHHHhccCCCCCCccceeccCCCCCCcccC
Confidence            45666555555555799999999999999999998 888877        78888776543

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=97.44  E-value=6.1e-05  Score=42.02  Aligned_cols=26  Identities=19%  Similarity=0.221  Sum_probs=23.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|+.|++.|...+.|..|+++|.+++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 1rik_A            4 ACPECPKRFMRSDHLTLHILLHENKK   29 (29)
T ss_dssp             ECSSSSCEESCSHHHHHHHTGGGSCC
T ss_pred             cCCCCCchhCCHHHHHHHHHHhcCCC
Confidence            47899999999999999999998763

>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.40  E-value=1.4e-05  Score=56.94  Aligned_cols=62  Identities=19%  Similarity=0.246  Sum_probs=48.0

Q ss_pred             HHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc----CCCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCC
Q 019380           29 HLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL----TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        29 ~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~----~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~  103 (342)
                      .|..|+.+  |.+.++ .|..|++.|. ...|..|+    .+++.            |+.|++.|. ...|..|+++|.+
T Consensus         4 ~L~~H~~~--~c~~r~~~C~~C~~~~~-~~~L~~H~~~c~~~~~~------------C~~C~~~~~-~~~l~~H~~~c~~   67 (75)
T 2d9k_A            4 GSSGHEET--ECPLRLAVCQHCDLELS-ILKLKEHEDYCGARTEL------------CGNCGRNVL-VKDLKTHPEVCGR   67 (75)
T ss_dssp             CCSCCCCC--CCCCCCEECSSSCCEEC-HHHHHHHHHHHHHCEEE------------CSSSCCEEE-TTGGGTHHHHBTT
T ss_pred             HHHhhCcc--cCCCcccCCcccChHhh-HHHHHHHHhHcCCCceE------------cccCCCcCc-HHHHHHHHHHccC
Confidence            35567777  888888 9999999995 88899997    44554            567888777 4789999999887


Q ss_pred             CCC
Q 019380          104 SAP  106 (342)
Q Consensus       104 ~~~  106 (342)
                      ++.
T Consensus        68 ~~~   70 (75)
T 2d9k_A           68 EGS   70 (75)
T ss_dssp             BSS
T ss_pred             CcC
Confidence            644

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=97.40  E-value=8.1e-05  Score=41.42  Aligned_cols=26  Identities=19%  Similarity=0.445  Sum_probs=23.1

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|+.|++.|...+.|..|+++|.+++
T Consensus         4 ~C~~C~~~f~~~~~l~~H~~~h~~~k   29 (29)
T 1ard_A            4 VCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHHSCCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHhcCCC
Confidence            47899999999999999999998763

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.38  E-value=8.4e-05  Score=41.61  Aligned_cols=26  Identities=27%  Similarity=0.612  Sum_probs=23.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|+.|+++|...+.|..|++.|.+++
T Consensus         5 ~C~~C~~~f~~~~~l~~H~~~h~~~k   30 (30)
T 2m0d_A            5 QCDYCGRSFSDPTSKMRHLETHDTDK   30 (30)
T ss_dssp             ECTTTCCEESCHHHHHHHHHTTCCCC
T ss_pred             cCCCCCcccCCHHHHHHHHHHhccCC
Confidence            47889999999999999999998763

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.32  E-value=8.6e-05  Score=41.19  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=23.1

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|+.|++.|...+.|..|+++|++++
T Consensus         4 ~C~~C~~~f~~~~~l~~H~~~h~~~~   29 (29)
T 2m0e_A            4 KCPHCDKKFNQVGNLKAHLKIHIADG   29 (29)
T ss_dssp             CCSSCCCCCCTTTHHHHHHHHHHSCC
T ss_pred             cCCCCCcccCCHHHHHHHHHHhccCC
Confidence            47899999999999999999998763

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=97.32  E-value=7.7e-05  Score=41.46  Aligned_cols=26  Identities=23%  Similarity=0.378  Sum_probs=23.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|+.|++.|.....|..|+++|.+++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2m0f_A            4 KCRECGKQFTTSGNLKRHLRIHSGEK   29 (29)
T ss_dssp             ECTTTSCEESCHHHHHHHHHHHHTCC
T ss_pred             cCCCCCCccCChhHHHHHHHHhcCCC
Confidence            47889999999999999999998764

>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*

Probab=97.31  E-value=0.00059  Score=58.24  Aligned_cols=84  Identities=18%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             CCCeEEEeeCchhhhhhccc--cCCCcceee-ccccccccccCCCCccHHHHHHHHhCCcCCCC---------C------
Q 019380          215 GKARLLVGHGLEHDLDSLRM--NYPDHMLRD-TAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG---------V------  276 (342)
Q Consensus       215 ~~~~~lvgh~~~~D~~~l~~--~~~~~~~~D-t~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~---------~------  276 (342)
                      +.+.+.||||+.+|+..|..  ......++| ++.....+.+ ...++|+.|+..|+|..+..+         .      
T Consensus        94 d~~i~Kv~~~~k~D~~~L~~~~gi~~~~~fDlt~lAayll~~-~~~~~L~~L~~~~l~~~~~K~k~~~~s~W~~~~L~~~  172 (208)
T 2e6m_A           94 NKSIKKAGVGIEGDQWKLLRDFDVKLESFVELTDVANEKLKC-AETWSLNGLVKHVLGKQLLKDKSIRCSNWSNFPLTED  172 (208)
T ss_dssp             CTTSEEEESSHHHHHHHHHHHHCCCCCSEEEHHHHHHHHTTC-CCCCCHHHHHHHHHSCBCCCCHHHHTSCTTSSSCCHH
T ss_pred             CCCceEEEEeeHHHHHHHHHHCCCCCCCEEEHHHHHHHHccC-CCChhHHHHHHHHcCCCcCCCCCeeeCCCCCCCCCHH
Confidence            35678999999999999973  332233889 5554444444 467999999999988775321         0      


Q ss_pred             --CCcHHHHHHHHHHHHHHHhhhhh
Q 019380          277 --HDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       277 --H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                        .-|..||.++..|+..+..+..+
T Consensus       173 q~~YAa~Da~~~~~L~~~L~~~L~~  197 (208)
T 2e6m_A          173 QKLYAATDAYAGLIIYQKLGNLGDT  197 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccch
Confidence              12568999999999999888655

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.30  E-value=4e-05  Score=56.27  Aligned_cols=38  Identities=16%  Similarity=0.175  Sum_probs=31.5

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCCCcccccccc
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVPFKISGAIDE  117 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~~~~c~~~~~  117 (342)
                      .|+.|++.|..++.|..|+++|.+++|+.|..|.....
T Consensus        27 ~C~~C~k~F~~~~~L~~H~~~Ht~ekp~~C~~~~~~~~   64 (88)
T 1x6f_A           27 QCKHCDSKLQSTAELTSHLNIHNEEFQKRAKRQERRKQ   64 (88)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHHHHHHHHCCCCSCCCC
T ss_pred             cCCCCCCEeCCHHHHHHHHHHhCCCCCcccchhhhHHH
Confidence            36788888999999999999999999999887765544

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.27  E-value=0.00013  Score=43.03  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=22.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|+.|++.|..+..|..|+++|.+++
T Consensus        11 ~C~~C~k~f~~~~~l~~H~~~H~~ek   36 (36)
T 2elr_A           11 LCDMCGKKFKSKGTLKSHKLLHTADG   36 (36)
T ss_dssp             BCTTTCCBCSSHHHHHHHHHHHSSCC
T ss_pred             ecCcCCCCcCchHHHHHHHHHhcCCC
Confidence            47889999999999999999998764

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=97.26  E-value=0.00015  Score=41.20  Aligned_cols=23  Identities=22%  Similarity=0.362  Sum_probs=21.2

Q ss_pred             ccccccCChhhHHHHHhhcCCCC
Q 019380           83 LCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        83 ~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .||++|...+.|..|+++|.+++
T Consensus         9 ~C~k~f~~~~~L~~H~~~H~~~k   31 (31)
T 1sp2_A            9 YCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             TCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCCcccCCHhHHHHHHHHhcCCC
Confidence            89999999999999999998764

>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*

Probab=97.24  E-value=0.0024  Score=59.93  Aligned_cols=159  Identities=13%  Similarity=0.108  Sum_probs=91.6

Q ss_pred             CCCcceeccccccccc-CCCc---ccccceEEeecCCCCe--EEeeecCCCCCccccc---------cccCCCCHh---h
Q 019380          122 RGPKAVAMDCEMVGGG-SNGT---LDLCARVCLVDEDENV--IFHTYVQPQLPVTNYR---------YEVTGLTEE---D  183 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~-~~~~---~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~---------~~i~GIt~e---~  183 (342)
                      +..++++||+||++.+ ++..   .++ ..+++++..+..  +|.-+-.|.....++.         ..+..-.+.   .
T Consensus       104 p~l~vlsfDIEt~~~~fP~~~~~~d~I-i~Is~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~  182 (388)
T 1noy_A          104 KFVRVANCDIEVTGDKFPDPMKAEYEI-DAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDR  182 (388)
T ss_dssp             GGCCEEEEEEEECCSSCCCTTTCCSCE-EEEEEEETTTTEEEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCCHHHHTT
T ss_pred             CCeEEEEEEEEeCCCCCCCCCCCCCeE-EEEEEEEecCCeEEEEEEeeccCCCCCccccccccccccccccccccccCCC
Confidence            5567899999999721 2221   233 566666565543  2322222222111110         011111111   1


Q ss_pred             --hcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc----c--c---------CCC-------
Q 019380          184 --IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR----M--N---------YPD-------  238 (342)
Q Consensus       184 --l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~----~--~---------~~~-------  238 (342)
                        +...++..+++.+|.+++...           ...+|+|||+ .||+.+|.    .  .         ++.       
T Consensus       183 v~v~~~~~E~~LL~~f~~~i~~~-----------dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~  251 (388)
T 1noy_A          183 VIYMPFDNERDMLMEYINLWEQK-----------RPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQ  251 (388)
T ss_dssp             EEEEEESCHHHHHHHHHHHHHHS-----------CCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECC
T ss_pred             eEEEEcCCHHHHHHHHHHHHHHh-----------CCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccCh
Confidence              124567889999999999543           2359999997 67998865    1  1         110       


Q ss_pred             -------------cceeecccccccc-ccCCCCccHHHHHHHHhCCcCCCCCCC----------------cHHHHHHHHH
Q 019380          239 -------------HMLRDTAKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSGVHD----------------PYEDCVSVMR  288 (342)
Q Consensus       239 -------------~~~~Dt~~l~~~~-~~~~~~~~L~~l~~~~~~~~~~~~~H~----------------A~~Da~~t~~  288 (342)
                                   ..++|+..+.+.. +....+++|+.+|..+||.. ....+.                .+.||..|++
T Consensus       252 ~~~g~~~~~~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~-K~d~~~~i~~~~~~~~~~l~~Y~~~D~~l~~~  330 (388)
T 1noy_A          252 NMYGSKEIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKG-KLPYDGPINKLRETNHQRYISYNIIDVESVQA  330 (388)
T ss_dssp             GGGCSCEEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCC-CCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhCCcceEEEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCC-CCCcHHHHHHHHHhCHHHHHHHHHHHHHHHHH
Confidence                         0144555544442 32267899999999998886 332212                3669999999


Q ss_pred             HHHHH
Q 019380          289 LYKRF  293 (342)
Q Consensus       289 l~~~~  293 (342)
                      |+.++
T Consensus       331 L~~kl  335 (388)
T 1noy_A          331 IDKIR  335 (388)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99884

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=97.24  E-value=8.6e-05  Score=44.67  Aligned_cols=18  Identities=44%  Similarity=0.741  Sum_probs=9.1

Q ss_pred             ccccccccCChhhHHHHH
Q 019380           81 CNLCMNIFDSPSSLIKHK   98 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~   98 (342)
                      |++||++|.++++|++|+
T Consensus        11 C~~CgK~F~~~s~L~~H~   28 (36)
T 1fv5_A           11 CLPCGIAFSSPSTLEAHQ   28 (36)
T ss_dssp             ETTTTEECSCHHHHHHHH
T ss_pred             CCCCCCccCCHhHccCcC
Confidence            344555555555555554

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=96.33  E-value=4.6e-05  Score=42.66  Aligned_cols=26  Identities=31%  Similarity=0.497  Sum_probs=22.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|+.|++.|...++|..|+++|++++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~H~~~k   29 (29)
T 2lvt_A            4 QCVMCGKAFTQASSLIAHVRQHTGEK   29 (29)
Confidence            47889999999999999999998753

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.21  E-value=0.00016  Score=42.76  Aligned_cols=26  Identities=15%  Similarity=0.256  Sum_probs=22.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|+.|++.|..++.|..|+++|.+++
T Consensus        11 ~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elv_A           11 DCHICERKFKNELDRDRHMLVHGDKW   36 (36)
T ss_dssp             ECSSSCCEESSHHHHHHHHTTTSTTC
T ss_pred             ECCCCCCccCCHHHHHHHHHHhcCCC
Confidence            36888999999999999999988753

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.20  E-value=0.00015  Score=42.81  Aligned_cols=26  Identities=23%  Similarity=0.422  Sum_probs=22.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|+.|++.|...+.|..|+++|.+++
T Consensus        11 ~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2els_A           11 TCEYCNKVFKFKHSLQAHLRIHTNEK   36 (36)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHCCCC
T ss_pred             ECCCCCceeCCHHHHHHHHHHhCCCC
Confidence            36889999999999999999998763

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.19  E-value=0.00016  Score=39.98  Aligned_cols=24  Identities=17%  Similarity=0.365  Sum_probs=21.0

Q ss_pred             cccccccccCChhhHHHHHhhcCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~  103 (342)
                      .|+.|++.|...+.|..|+++|++
T Consensus         5 ~C~~C~k~f~~~~~l~~H~~~h~~   28 (28)
T 2kvf_A            5 SCSVCGKRFSLKHQMETHYRVHTG   28 (28)
T ss_dssp             ECSSSCCEESCHHHHHHHHTTSCC
T ss_pred             cCCCCCcccCCHHHHHHHHHhcCC
Confidence            478899999999999999998864

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.17  E-value=0.00018  Score=42.45  Aligned_cols=26  Identities=15%  Similarity=0.147  Sum_probs=22.2

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|+.|++.|...+.|..|+++|.+++
T Consensus        11 ~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elt_A           11 KCPQCSYASAIKANLNVHLRKHTGEK   36 (36)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHHTCCC
T ss_pred             CCCCCCcccCCHHHHHHHHHHccCCC
Confidence            36889999999999999999998763

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.16  E-value=0.00025  Score=40.57  Aligned_cols=26  Identities=31%  Similarity=0.543  Sum_probs=22.7

Q ss_pred             ccc--ccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCN--LCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~--~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|+  .|++.|...+.|..|+++|.+++
T Consensus         5 ~C~~~~C~k~f~~~~~L~~H~~~H~~~~   32 (32)
T 1zfd_A            5 SCDHPGCDKAFVRNHDLIRHKKSHQEKA   32 (32)
T ss_dssp             CCCCTTCCCCBSSSHHHHHHHGGGTCCC
T ss_pred             cCcCCCCCCccCCHHHHHHHHHHccCCC
Confidence            366  89999999999999999998764

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.14  E-value=0.00021  Score=40.01  Aligned_cols=26  Identities=31%  Similarity=0.569  Sum_probs=22.4

Q ss_pred             cccccccccCChhhHHHH-HhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKH-KEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H-~~~h~~~~  105 (342)
                      .|+.|++.|...+.|..| +++|.+++
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~~H~~~~   30 (30)
T 1paa_A            4 ACGLCNRAFTRRDLLIRHAQKIHSGNL   30 (30)
T ss_dssp             BCTTTCCBCSSSHHHHHHHTTTSCCCC
T ss_pred             CCcccCcccCChHHHHHHHHHHccCCC
Confidence            478899999999999999 78888753

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=97.14  E-value=0.00018  Score=43.11  Aligned_cols=28  Identities=21%  Similarity=0.351  Sum_probs=24.8

Q ss_pred             ccc--ccccccCChhhHHHHHhhcCCCCCC
Q 019380           80 GCN--LCMNIFDSPSSLIKHKEACSLSAPV  107 (342)
Q Consensus        80 ~C~--~C~k~F~~~~~L~~H~~~h~~~~~~  107 (342)
                      .|+  .|+++|...+.|.+|+++|.+++++
T Consensus         8 ~C~~~~C~k~f~~~~~L~~H~~~H~~~k~~   37 (38)
T 1bhi_A            8 LCTAPGCGQRFTNEDHLAVHKHKHEMTLKF   37 (38)
T ss_dssp             ECCCTTTCCEESSHHHHHHHHHHHHTTTTT
T ss_pred             ECCCCCCCcccCCHHHHHHHHHHhCCCCCC
Confidence            356  5999999999999999999998876

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=96.20  E-value=7e-05  Score=42.08  Aligned_cols=25  Identities=24%  Similarity=0.446  Sum_probs=22.2

Q ss_pred             cccccccccCChhhHHHHHhhcCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      .|+.|++.|...+.|..|+++|+++
T Consensus         5 ~C~~C~k~f~~~~~l~~H~~~h~~~   29 (30)
T 2lvr_A            5 VCIHCQRQFADPGALQRHVRIHTGE   29 (30)
Confidence            4788999999999999999999865

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.12  E-value=0.00023  Score=42.03  Aligned_cols=26  Identities=31%  Similarity=0.393  Sum_probs=22.1

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|+.|++.|...+.|..|+++|.+++
T Consensus        11 ~C~~C~k~f~~~~~l~~H~~~H~~~k   36 (36)
T 2elq_A           11 KCSLCEYATRSKSNLKAHMNRHSTEK   36 (36)
T ss_dssp             ECSSSSCEESCHHHHHHHHHHSSTTC
T ss_pred             cCCCCCchhCCHHHHHHHHHHhccCC
Confidence            36889999999999999999998753

>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A

Probab=97.09  E-value=0.0018  Score=66.19  Aligned_cols=147  Identities=12%  Similarity=0.078  Sum_probs=89.6

Q ss_pred             CCCcceeccccccccc-CCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 019380          122 RGPKAVAMDCEMVGGG-SNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  200 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~-~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~  200 (342)
                      +..++++||+||+|.. ++.....+..++.++.++..++..  .             .|..+.+...++..+++.+|.++
T Consensus       133 ~~l~ilsfDIEt~~~~~p~~~~d~Ii~Is~~~~~~~~~~t~--~-------------~i~~~~v~~~~~E~~LL~~f~~~  197 (775)
T 1qht_A          133 EELTMLAFAIATLYHEGEEFGTGPILMISYADGSEARVITW--K-------------KIDLPYVDVVSTEKEMIKRFLRV  197 (775)
T ss_dssp             CCCCEEEEEEEECCCTTCCTTCSCEEEEEEECSSCEEEEES--S-------------CCCCSSEEECSCHHHHHHHHHHH
T ss_pred             CCcEEEEEEEEEcCCCCCCCCCCcEEEEEEEecCCCeeEee--c-------------cccccceEEcCCHHHHHHHHHHH
Confidence            4678999999999832 221122224555544444333211  1             12223455677889999999999


Q ss_pred             HhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-----ccCC------------------------Ccceeeccccccc
Q 019380          201 LNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYP------------------------DHMLRDTAKYRPL  250 (342)
Q Consensus       201 l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~------------------------~~~~~Dt~~l~~~  250 (342)
                      |...           .-.+|||||+ .||+.+|.     +..+                        -...+|+..+.+.
T Consensus       198 i~~~-----------dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~lgR~~~~~~~~~~g~~~~~~i~Gr~~lDl~~~~k~  266 (775)
T 1qht_A          198 VREK-----------DPDVLITYNGDNFDFAYLKKRCEELGIKFTLGRDGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRR  266 (775)
T ss_dssp             HHHH-----------CCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSTTSCCCEEEEETTEEEEECTTSEEEEHHHHHHH
T ss_pred             HHhc-----------CCCEEEEeCCCCccHHHHHHHHHHcCCCcccccCCCcCceeecCceeeEEecCeEEEEHHHHHHH
Confidence            9432           1249999996 57999877     1111                        1224465554444


Q ss_pred             cccCCCCccHHHHHHHHhCCcCCCCC------------------CCcHHHHHHHHHHHHHHHh
Q 019380          251 MKTNLVSHSLKYLTRTYLGYDIQSGV------------------HDPYEDCVSVMRLYKRFRR  295 (342)
Q Consensus       251 ~~~~~~~~~L~~l~~~~~~~~~~~~~------------------H~A~~Da~~t~~l~~~~~~  295 (342)
                      .. ...+++|+.+|..+||.....-.                  .-.+.||..|..|+.+++.
T Consensus       267 ~~-~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~~l~~l~~Y~~~Da~lt~~L~~~~~~  328 (775)
T 1qht_A          267 TI-NLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGEGLERVARYSMEDAKVTYELGREFFP  328 (775)
T ss_dssp             HS-CCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hc-CcCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            32 44689999999988898633211                  1125699999999877653

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.09  E-value=0.00022  Score=39.01  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=20.2

Q ss_pred             cccccccccCChhhHHHHHhhcC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      .|+.||+.|...+.|..|+++|+
T Consensus         5 ~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvh_A            5 SCSLCPQRSRDFSAMTKHLRTHG   27 (27)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHCC
T ss_pred             cCCCcChhhCCHHHHHHHHHHcc
Confidence            47889999999999999998874

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.07  E-value=0.00023  Score=43.32  Aligned_cols=24  Identities=17%  Similarity=0.191  Sum_probs=21.2

Q ss_pred             ccc--cccccCChhhHHHHHhhcCCC
Q 019380           81 CNL--CMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        81 C~~--C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      |+.  |+++|..+++|.+|+++|.++
T Consensus        12 C~~~~C~k~F~~~~~L~~H~r~Htg~   37 (38)
T 2eln_A           12 CPTDGCDYSTPDKYKLQAHLKVHTAL   37 (38)
T ss_dssp             CSSSSCCCEESCHHHHHHHHHHHSCC
T ss_pred             CCCCCCCCccCCHHHHHHHHHhcCCC
Confidence            554  999999999999999999875

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=97.06  E-value=0.00019  Score=39.43  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=20.0

Q ss_pred             cccccccccCChhhHHHHHhhcC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      .|+.||+.|...+.|..|+++|+
T Consensus         5 ~C~~C~k~f~~~~~l~~H~~~H~   27 (27)
T 2kvg_A            5 RCPLCRAGCPSLASMQAHMRGHS   27 (27)
T ss_dssp             EETTTTEEESCHHHHHHHHTTCC
T ss_pred             CCCCCCcccCCHHHHHHHHHhcC
Confidence            47889999999999999998874

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=97.02  E-value=0.00035  Score=41.39  Aligned_cols=25  Identities=24%  Similarity=0.418  Sum_probs=19.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      .|+.|++.|..++.|..|+++|.++
T Consensus        13 ~C~~C~k~f~~~~~l~~H~~~H~~~   37 (37)
T 1p7a_A           13 QCPDCDRSFSRSDHLALHRKRHMLV   37 (37)
T ss_dssp             CCTTTCCCBSSHHHHHHHHGGGTCC
T ss_pred             cCCCCCcccCcHHHHHHHHHHhccC
Confidence            3577888888888888888888763

>2a1r_A Poly(A)-specific ribonuclease PARN; DEDD, nuclease domain, hydrolase-RNA complex; 2.60A {Homo sapiens} PDB: 2a1s_A

Probab=97.02  E-value=0.0015  Score=62.12  Aligned_cols=99  Identities=17%  Similarity=0.194  Sum_probs=69.4

Q ss_pred             hhcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc-------------------ccCCCcceee
Q 019380          183 DIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------------------MNYPDHMLRD  243 (342)
Q Consensus       183 ~l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------------------~~~~~~~~~D  243 (342)
                      .+..+..|..|++.|.+                .+.+|||||.-.|+-++-                   --+|.  ++|
T Consensus       263 ~l~~~~Gfr~V~~~L~~----------------s~KpiVGHN~llDl~~l~~~F~~pLP~~~~eFk~~i~~lFP~--i~D  324 (430)
T 2a1r_A          263 ELNDAVGFSRVIHAIAN----------------SGKLVIGHNMLLDVMHTVHQFYCPLPADLSEFKEMTTCVFPR--LLD  324 (430)
T ss_dssp             HHHTTSBTHHHHHHHHH----------------HCCEEEESSCHHHHHHHHHHHTCCCCSSHHHHHHHHHHHCSS--EEE
T ss_pred             HHHhhhhHHHHHHHHHh----------------CCCceEechhHHHHHHHHHHhccCCCCCHHHHHHHHHHHCCc--eee
Confidence            45556666666666654                457999999999999766                   11454  899


Q ss_pred             cccccccc--ccCCCCccHHHHHHHHhCCcC-----------------CCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          244 TAKYRPLM--KTNLVSHSLKYLTRTYLGYDI-----------------QSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       244 t~~l~~~~--~~~~~~~~L~~l~~~~~~~~~-----------------~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      |..++...  .......+|..|...+...+.                 .+..|.|-.||.+|+.+|.++......
T Consensus       325 TK~la~~~~~~~~~~~~sL~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDa~mTG~vFi~l~~~l~~  399 (430)
T 2a1r_A          325 TKLMASTQPFKDIINNTSLAELEKRLKETPFNPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLGS  399 (430)
T ss_dssp             HHHHHTSTTTTTTCSCCSHHHHHHHTTSTTCCCCCEEECTTCCCC-----CCCCHHHHHHHHHHHHHHHHHHHGG
T ss_pred             hHHhhhccchhhccCCCCHHHHHHHHHhCCCCCCeeecCCCccccccCCCCccchHHHHHHHHHHHHHHHHHHhh
Confidence            98877543  122345789999887732211                 112699999999999999999987543

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.01  E-value=0.00023  Score=42.26  Aligned_cols=26  Identities=27%  Similarity=0.258  Sum_probs=21.6

Q ss_pred             cccccccccCCh-hhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSP-SSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~-~~L~~H~~~h~~~~  105 (342)
                      .|+.|++.|... +.|..|+++|.+++
T Consensus        11 ~C~~C~k~f~~~~~~L~~H~~~H~~~k   37 (37)
T 2elp_A           11 KCPYCDFYFMKNGSDLQRHIWAHEGVK   37 (37)
T ss_dssp             ECSSSSCEECSSCHHHHHHHHHHHTCC
T ss_pred             ECCCCChhhccCHHHHHHHHHhcCCCC
Confidence            367888899998 99999999988753

>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A

Probab=96.99  E-value=0.00026  Score=60.54  Aligned_cols=82  Identities=20%  Similarity=0.176  Sum_probs=62.0

Q ss_pred             CCCeEEEeeCchhhhhhccccC--CCcceeeccccccccccC--CCCccHHHHHHHHhCCcC-CCC--------------
Q 019380          215 GKARLLVGHGLEHDLDSLRMNY--PDHMLRDTAKYRPLMKTN--LVSHSLKYLTRTYLGYDI-QSG--------------  275 (342)
Q Consensus       215 ~~~~~lvgh~~~~D~~~l~~~~--~~~~~~Dt~~l~~~~~~~--~~~~~L~~l~~~~~~~~~-~~~--------------  275 (342)
                      +.+.+-|||++.+|+..|...+  ....++|+..++....+.  ..+.+|+.|++.++|+.+ +..              
T Consensus       106 d~~i~Kvg~~~~~D~~~L~~~~g~~~~~~~Dl~~la~~~lg~~~~~~~gL~~Lv~~~lg~~lK~k~~~~SdW~~pLs~~Q  185 (206)
T 1vk0_A          106 SKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWEKAGPEEQ  185 (206)
T ss_dssp             CSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCCCCHHHHHHHHTGGGSCHHHH
T ss_pred             CCCceEEEeccHHHHHHHHHhcCCCcCCeeeHHHHHHHHcCCCCCCCccHHHHHHHHhCCcCCCCCcccCCCCCcCCHHH
Confidence            4678999999999999998332  235689998766443332  457899999999999998 210              


Q ss_pred             CCCcHHHHHHHHHHHHHHHhh
Q 019380          276 VHDPYEDCVSVMRLYKRFRRQ  296 (342)
Q Consensus       276 ~H~A~~Da~~t~~l~~~~~~~  296 (342)
                      -+-|..||....+||.++.++
T Consensus       186 i~YAA~Da~~l~~l~~~L~~~  206 (206)
T 1vk0_A          186 LEAAAIEGWLIVNVWDQLSDE  206 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHcC
Confidence            244788999999999998753

>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}

Probab=96.96  E-value=0.00086  Score=65.17  Aligned_cols=98  Identities=18%  Similarity=0.190  Sum_probs=69.0

Q ss_pred             hhcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc-------------------ccCCCcceee
Q 019380          183 DIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-------------------MNYPDHMLRD  243 (342)
Q Consensus       183 ~l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-------------------~~~~~~~~~D  243 (342)
                      .+..+..|..|++.|.+                .+.+|||||.-.|+.+|-                   .-+|.  ++|
T Consensus       258 ~~~~~~Gfr~v~~~L~~----------------~~kpiVgHN~l~Dl~~l~~~F~~pLP~~~~eFk~~i~~lFP~--i~D  319 (507)
T 3d45_A          258 ELNDAVGFSRVIHAIAN----------------SGKLVVGHNMLLDVMHTIHQFYCPLPADLNEFKEMAICVFPR--LLD  319 (507)
T ss_dssp             HHHHHSBTHHHHHHHHH----------------HCCEEEESSCHHHHHHHHHHHTCSCCSSHHHHHHHHHHHCSC--EEE
T ss_pred             HHHhhhhHHHHHHHHHh----------------CCCeEEEechHHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCc--eeE
Confidence            34444556666666654                557999999999999877                   11454  899


Q ss_pred             cccccccc--ccCCCCccHHHHHHHHhCC----c------------C-CCCCCCcHHHHHHHHHHHHHHHhhhh
Q 019380          244 TAKYRPLM--KTNLVSHSLKYLTRTYLGY----D------------I-QSGVHDPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       244 t~~l~~~~--~~~~~~~~L~~l~~~~~~~----~------------~-~~~~H~A~~Da~~t~~l~~~~~~~~~  298 (342)
                      |..++...  .......+|+.|++.+-..    +            . .+..|.|=.||.+|+.+|.++.....
T Consensus       320 TK~la~~~~~~~~~~~~~L~~l~~~l~~~~~~~p~i~~~~~~~~y~~~~~~~HeAGyDA~mTg~~F~kl~~~l~  393 (507)
T 3d45_A          320 TKLMASTQPFKDIINNTSLAELEKRLKETPFDPPKVESAEGFPSYDTASEQLHEAGYDAYITGLCFISMANYLG  393 (507)
T ss_dssp             HHHHTTSTTHHHHCCCCCHHHHHHHTTSTTCCCCCEEECTTSCCCC----CCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred             hHhhhhcCccccccCCCCHHHHHHHHhccCCCCCeEEecccccccccCCCCcccHHHHHHHHHHHHHHHHHHHh
Confidence            99887652  2233467899999988311    1            0 11279999999999999999987654

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=95.96  E-value=0.00014  Score=39.46  Aligned_cols=23  Identities=26%  Similarity=0.394  Sum_probs=19.7

Q ss_pred             cccccccccCChhhHHHHHhhcC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      .|+.||+.|...+.|..|+++|.
T Consensus         4 ~C~~C~k~f~~~~~l~~H~~~H~   26 (26)
T 2lvu_A            4 VCERCGKRFVQSSQLANHIRHHD   26 (26)
Confidence            47889999999999999998763

>2p51_A SPCC18.06C protein; DEDD nuclease fold, hydrolase, gene regulation; 1.40A {Schizosaccharomyces pombe} PDB: 3g0z_A 3g10_A

Probab=96.81  E-value=0.012  Score=53.25  Aligned_cols=106  Identities=10%  Similarity=0.091  Sum_probs=73.4

Q ss_pred             CCCCHhhh-cCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc--------------------cc
Q 019380          177 TGLTEEDI-KNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR--------------------MN  235 (342)
Q Consensus       177 ~GIt~e~l-~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~--------------------~~  235 (342)
                      +||.=+.. .++.+..+..+.+..    +--++      .++..+|.++..+|+.+|-                    .-
T Consensus       130 ~G~DF~k~~~~GI~~~~F~elL~~----SGLvl------~~~V~Witfhg~YDfgyLlK~Lt~~~LP~~~~eF~~~l~~~  199 (333)
T 2p51_A          130 SGIDFKKHQEVGIEPADFAELLIG----SGLVL------QEEVTWITFHSGYDFAYLLKAMTQIPLPAEYEEFYKILCIY  199 (333)
T ss_dssp             TTCCHHHHHHHCBCHHHHHHHHHT----TTSSS------CTTCEEEESSCHHHHHHHHHHHHCSCCCSSHHHHHHHHHHH
T ss_pred             cCCChhHHHHcCCCHHHHHHHHHh----cCccc------CCCceEEEeccchhHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence            56665443 356666544333332    11111      2456888988999998765                    11


Q ss_pred             CCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhh
Q 019380          236 YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       236 ~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                      +|  .+.|+..+.+....  ..-+|+.||+.+ |+.-.+..|.|-.|+..|+.+|.++++..
T Consensus       200 FP--~iYD~K~l~~~~~~--l~ggL~~lA~~L-~v~Rig~~HqAGsDSlLT~~~F~kl~~~~  256 (333)
T 2p51_A          200 FP--KNYDIKYIMKSVLN--NSKGLQDIADDL-QIHRIGPQHQAGSDALLTARIFFEIRSRY  256 (333)
T ss_dssp             SS--SEEEHHHHHTTTTC--CCCCHHHHHHHT-TCCCCSCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             Cc--chhhHHHHHHHhcc--ccCCHHHHHHHc-CCCccCcchhhhhHHHHHHHHHHHHHHHh
Confidence            44  37898888877642  356899999988 88854558999999999999999999875

>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5

Probab=96.80  E-value=0.0026  Score=59.45  Aligned_cols=83  Identities=12%  Similarity=0.111  Sum_probs=63.7

Q ss_pred             CCeEEEeeCchhhhhhcc--ccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCCCC---------C------
Q 019380          216 KARLLVGHGLEHDLDSLR--MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVH---------D------  278 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~--~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H---------~------  278 (342)
                      .+.+.||||+.+|+.+|.  .......+.||+..+..+.+ ..+++|+.|++.|+|..+.++.-         +      
T Consensus        73 ~~i~Kv~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~lL~~-~~~~~L~~L~~~~l~~~l~K~~~~sdw~~rpL~~~q~~Y  151 (375)
T 1yt3_A           73 PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCGR-PMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEY  151 (375)
T ss_dssp             TTSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTTC-CTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHH
T ss_pred             CCceEEEeeHHHHHHHHHHHcCCCCCcEEEcHHHHHHcCC-CCChhHHHHHHHHcCCCCCCCcccCCCCCCCCCHHHHHH
Confidence            556889999999999996  33333468999987777755 35899999999998987654311         1      


Q ss_pred             cHHHHHHHHHHHHHHHhhhhh
Q 019380          279 PYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       279 A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      |..||..+..||..+..+..+
T Consensus       152 Aa~Da~~l~~L~~~L~~~L~~  172 (375)
T 1yt3_A          152 AAADVWYLLPITAKLMVETEA  172 (375)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            567999999999999877654

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.79  E-value=0.0006  Score=46.99  Aligned_cols=27  Identities=22%  Similarity=0.568  Sum_probs=23.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~  106 (342)
                      .|..|++.|.++++|.+|+++|+++..
T Consensus        15 ~C~~CgK~F~~~s~L~~H~r~Htg~~~   41 (66)
T 2epp_A           15 PCGLCGKVFTDANRLRQHEAQHGVTSL   41 (66)
T ss_dssp             CCTTTCCCCSCHHHHHHHHHHHTTTSC
T ss_pred             CCCCCCCccCCHHHHHhhhhhhCCCcc
Confidence            468899999999999999999998754

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=96.78  E-value=0.00052  Score=43.73  Aligned_cols=28  Identities=14%  Similarity=0.319  Sum_probs=21.9

Q ss_pred             cccccccccCChhhHHHHHh-hcCCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKE-ACSLSAPV  107 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~-~h~~~~~~  107 (342)
                      .|..|++.|....+|..|++ +|.++...
T Consensus         9 ~C~~C~k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            9 ACDICGKRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHSSCC----
T ss_pred             ECCCcCcccCCHHHHHHHhhhhcCCCCCC
Confidence            46889999999999999999 99987665

>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...

Probab=96.77  E-value=0.00055  Score=67.67  Aligned_cols=94  Identities=6%  Similarity=0.010  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc---ccCCCcceeeccccccccccCCCCccHHHHHHHHhC
Q 019380          193 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR---MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLG  269 (342)
Q Consensus       193 v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~---~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~  269 (342)
                      +.+.|..++            ++.+...|+||+.+|+.+|.   +..+ ..+.||+..+..+.|...+++|++|+..|+|
T Consensus        69 ~l~~Lk~lL------------ed~~i~KV~hn~K~Dl~vL~~~Gi~l~-g~~fDTmLAAYLL~p~~~~~~L~~La~~yLg  135 (592)
T 3pv8_A           69 ADPQFVAWL------------GDETKKKSMFDSKRAAVALKWKGIELC-GVSFDLLLAAYLLDPAQGVDDVAAAAKMKQY  135 (592)
T ss_dssp             TCHHHHHHH------------TCTTSEEEESSHHHHHHHHHHTTCCCC-CEEEEHHHHHHHHCGGGCCCSHHHHHGGGTC
T ss_pred             HHHHHHHHH------------hCCCCeEEEechHHHHHHHHHcCCCCC-CccchHHHHHHHcCCCCCCCCHHHHHHHHcC
Confidence            446688888            34667999999999999996   2222 4578999988888887778999999999998


Q ss_pred             CcCCCC------------------CCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          270 YDIQSG------------------VHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       270 ~~~~~~------------------~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      ..+...                  ...|..||..+.+|+..+..+.++
T Consensus       136 ~~l~~~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L~~~L~e  183 (592)
T 3pv8_A          136 EAVRPDEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPFLDELRR  183 (592)
T ss_dssp             CSSCCHHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCchHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            875321                  133567999999999999877654

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=96.76  E-value=0.00059  Score=37.65  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.1

Q ss_pred             ccc--ccccccCChhhHHHHHhhcCC
Q 019380           80 GCN--LCMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        80 ~C~--~C~k~F~~~~~L~~H~~~h~~  103 (342)
                      .|+  .|++.|...+.|..|+++|.+
T Consensus         4 ~C~~~~C~k~f~~~~~l~~H~~~H~~   29 (29)
T 2ab3_A            4 VCHFENCGRSFNDRRKLNRHKKIHTG   29 (29)
T ss_dssp             EECSTTTCEEESSHHHHHHHHGGGTC
T ss_pred             CCcCCcCcCccCCHHHHHHHHHHhCC
Confidence            367  999999999999999999864

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=96.69  E-value=0.00059  Score=40.59  Aligned_cols=25  Identities=20%  Similarity=0.333  Sum_probs=21.4

Q ss_pred             cc--ccccccCChhhHHHHHhhcCCCC
Q 019380           81 CN--LCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        81 C~--~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      |.  .|++.|..++.|..|+++|.+++
T Consensus        11 C~~~~C~k~f~~~~~L~~H~~~H~~ek   37 (37)
T 1va1_A           11 CHIQGCGKVYGKTSHLRAHLRWHTGER   37 (37)
T ss_dssp             CCSTTCCCEESCHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCCccCCHHHHHHHHHhcCCCC
Confidence            55  59999999999999999998763

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.61  E-value=0.00084  Score=39.89  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=20.1

Q ss_pred             cccccccccCChhhHHHH-HhhcCCC
Q 019380           80 GCNLCMNIFDSPSSLIKH-KEACSLS  104 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H-~~~h~~~  104 (342)
                      .|+.|+++|..++.|..| ++.|.++
T Consensus        11 ~C~~C~k~f~~~~~L~~H~~~~H~~~   36 (37)
T 2elm_A           11 YCSQCHYSSITKNCLKRHVIQKHSNI   36 (37)
T ss_dssp             ECSSSSCEEECHHHHHHHHHHHTCCC
T ss_pred             ECCCCCcccCCHHHHHHHHHHHccCc
Confidence            367888888899999999 8888754

>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1

Probab=96.45  E-value=0.012  Score=60.74  Aligned_cols=150  Identities=16%  Similarity=0.169  Sum_probs=85.6

Q ss_pred             CCCCcceeccccc-ccc-c--CCCc---ccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHH
Q 019380          121 CRGPKAVAMDCEM-VGG-G--SNGT---LDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEV  193 (342)
Q Consensus       121 ~~~~~~v~~D~Et-tg~-~--~~~~---~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v  193 (342)
                      .+..++++||+|| ++. +  ++..   ..+ ..+++++.+|...+ .++.+... +.....   |....+...+...++
T Consensus       187 ~p~l~ilsfDIEt~s~~~g~fP~~~~~~d~I-i~Is~~~~~g~~~~-~~~~~~~~-~~~~~~---i~~~~v~~~~~E~~L  260 (847)
T 1s5j_A          187 IPKIKRVAIDIEVYTPVKGRIPDSQKAEFPI-ISIALAGSDGLKKV-LVLNRNDV-NEGSVK---LDGISVERFNTEYEL  260 (847)
T ss_dssp             CCCCCEEEEEEEECCSSSSCCCCTTTCCSCE-EEEEEEETTSCEEE-EEECSSCC-CCCCEE---ETTEEEEEESSHHHH
T ss_pred             CCCceEEEEEEEeCcCCCCCCCCccccCCcE-EEEEEEccCCCcEE-EEEeCCcc-cccccC---CCCCeEEEeCCHHHH
Confidence            4567889999999 742 1  2221   233 56666656654322 12233211 110111   122234456788999


Q ss_pred             HHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-----ccC-----CC------------cceeeccccccc
Q 019380          194 KDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNY-----PD------------HMLRDTAKYRPL  250 (342)
Q Consensus       194 ~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~-----~~------------~~~~Dt~~l~~~  250 (342)
                      +.+|.++|.+            .+ +|||||. .||+.+|.     +..     |.            ...+|...++..
T Consensus       261 L~~f~~~i~~------------~d-iivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr~~~~i~gr~~~Dl~~~~~~  327 (847)
T 1s5j_A          261 LGRFFDILLE------------YP-IVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFN  327 (847)
T ss_dssp             HHHHHHHHTT------------CS-EEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTS
T ss_pred             HHHHHHHhcc------------CC-EEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCCCceEeccEEEeehHHHHhh
Confidence            9999999932            33 9999996 57999987     111     11            122344333221


Q ss_pred             -c-----c-cCCCCccHHHHHHHHhCCcCCCCCC-------------CcHHHHHHHHHHH
Q 019380          251 -M-----K-TNLVSHSLKYLTRTYLGYDIQSGVH-------------DPYEDCVSVMRLY  290 (342)
Q Consensus       251 -~-----~-~~~~~~~L~~l~~~~~~~~~~~~~H-------------~A~~Da~~t~~l~  290 (342)
                       .     + ....+++|+.+|..+||.. ...-+             -.+.||..|.+|+
T Consensus       328 ~~~~~y~f~~kl~sysL~~Va~~~Lg~~-K~dv~~~i~~~~~~~l~~Ycl~Da~lt~~L~  386 (847)
T 1s5j_A          328 KAVRNYAFEGKYNEYNLDAVAKALLGTS-KVKVDTLISFLDVEKLIEYNFRDAEITLQLT  386 (847)
T ss_dssp             HHHHHHTSTTCCSSCSHHHHHHHHHCCC-CC--SSCTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhccccccccccHHHHHHHHhCCC-CcchhHhhhhccHHHHHHHHHHHHHHHHHHH
Confidence             0     1 1235899999999998876 22211             1355999999985

>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*

Probab=96.35  E-value=0.0059  Score=57.70  Aligned_cols=83  Identities=19%  Similarity=0.183  Sum_probs=63.3

Q ss_pred             CCCeEEEeeCchhhhhhccc--cCCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCCC------C---C-----
Q 019380          215 GKARLLVGHGLEHDLDSLRM--NYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGV------H---D-----  278 (342)
Q Consensus       215 ~~~~~lvgh~~~~D~~~l~~--~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~------H---~-----  278 (342)
                      +.+.+.||||+.+|+.+|..  ......+.||+..+..+.+.  +++|..|++.|+|..+.++.      -   +     
T Consensus       157 d~~i~KV~h~~k~Dl~~L~~~~Gi~~~~~fDt~lAa~LL~~~--~~~L~~L~~~~lg~~l~K~~~~sdW~~rpL~~~q~~  234 (410)
T 2hbj_A          157 NPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLP--RHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTA  234 (410)
T ss_dssp             CTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCS--CCSHHHHHHHHSCCCCCCTTTTSCTTCSSCCHHHHH
T ss_pred             CCCceEEEEehHHHHHHHHHHcCCCcCCEEEcHHHHHHhCCC--ccCHHHHHHHHcCCCCCccccccCCCCCCCCHHHHH
Confidence            35668899999999999962  33223389999877766543  69999999999988765431      1   1     


Q ss_pred             -cHHHHHHHHHHHHHHHhhhhh
Q 019380          279 -PYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       279 -A~~Da~~t~~l~~~~~~~~~~  299 (342)
                       |..||..+..||..+..+..+
T Consensus       235 YAa~Da~~ll~L~~~L~~~L~~  256 (410)
T 2hbj_A          235 AARADTHFLLNIYDQLRNKLIE  256 (410)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence             568999999999999888655

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=96.34  E-value=0.0014  Score=41.38  Aligned_cols=24  Identities=13%  Similarity=0.163  Sum_probs=20.9

Q ss_pred             cccccccCChhhHHHHHhhcCCCC
Q 019380           82 NLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      +.|+++|..+++|+.|+++|.+++
T Consensus        24 ~~C~k~F~~~~~L~~H~~~H~~ek   47 (47)
T 1ncs_A           24 PGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCCCccCCHHHHHHHHHHccCCC
Confidence            369999999999999999998764

>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...

Probab=96.25  E-value=0.022  Score=58.71  Aligned_cols=157  Identities=15%  Similarity=0.157  Sum_probs=96.2

Q ss_pred             CCcceeccccccccc--CC---CcccccceEEeecCCCCeE--EeeecCCCCCcccccc---------ccCCCCHhhhcC
Q 019380          123 GPKAVAMDCEMVGGG--SN---GTLDLCARVCLVDEDENVI--FHTYVQPQLPVTNYRY---------EVTGLTEEDIKN  186 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~--~~---~~~~il~~v~vv~~~~~~~--~~~lv~p~~~i~~~~~---------~i~GIt~e~l~~  186 (342)
                      ..+.+++|+|++.-+  ++   ...+| ..++..|..+...  |+.+..|.....++..         .-..++.+.+.+
T Consensus       107 ~ir~~~~DIEv~~~~~fPd~~~~~~~I-i~It~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (903)
T 3qex_A          107 KIRVANFDIEVTSPDGFPEPSQAKHPI-DAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDK  185 (903)
T ss_dssp             GSCEEEEEEECCCTTSSCCTTTCCSCC-CEEEEEETTTTEEEEEEECEETTEECCCCCHHHHHSCGGGTCCCCCHHHHTT
T ss_pred             cccEEEEeEEeCCCCCCCCcccCCCCE-EEEEEEeCCCCEEEEEEeeccccccccccccccccccccccccccccccCCC
Confidence            456889999997632  22   23444 7888888866663  3344444333333322         112344454443


Q ss_pred             -----CCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-----c-c------C-CC---------
Q 019380          187 -----AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----M-N------Y-PD---------  238 (342)
Q Consensus       187 -----~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~-~------~-~~---------  238 (342)
                           .+...+++.+|.+++...           .-.+|+|||+ .||+.+|.     + .      + +.         
T Consensus       186 v~v~~f~sE~eLL~~F~~~I~~~-----------DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~  254 (903)
T 3qex_A          186 IIYMPFDNEKELLMEYLNFWQQK-----------TPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIE  254 (903)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHT-----------CCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEE
T ss_pred             eEEEEcCCHHHHHHHHHHHHHHh-----------CCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchh
Confidence                 367889999999999543           2359999996 46988875     1 1      0 00         


Q ss_pred             -------------cceeecccccccc-ccCCCCccHHHHHHHHhCCcCCCCCCCc----------------HHHHHHHHH
Q 019380          239 -------------HMLRDTAKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSGVHDP----------------YEDCVSVMR  288 (342)
Q Consensus       239 -------------~~~~Dt~~l~~~~-~~~~~~~~L~~l~~~~~~~~~~~~~H~A----------------~~Da~~t~~  288 (342)
                                   ..++|+..+.+.. .....+++|+.+|..+||.... .-+..                +.||..+++
T Consensus       255 ~~~G~~~~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~-d~~~~I~~~~~~d~~~L~~Ycl~Da~Lt~~  333 (903)
T 3qex_A          255 NMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKL-KYDGPISKLRESNHQRYISYNIIAVYRVLQ  333 (903)
T ss_dssp             ETTEEEEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCC-CCSSCGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcCCceeEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCcc-ccHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence                         1134544444432 2345689999999999988733 22221                469999999


Q ss_pred             HHHH
Q 019380          289 LYKR  292 (342)
Q Consensus       289 l~~~  292 (342)
                      |+.+
T Consensus       334 L~~K  337 (903)
T 3qex_A          334 IDAK  337 (903)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            9987

>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}

Probab=96.11  E-value=0.014  Score=60.73  Aligned_cols=101  Identities=15%  Similarity=0.170  Sum_probs=65.1

Q ss_pred             hhhcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-----ccCCC-----------------
Q 019380          182 EDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-----MNYPD-----------------  238 (342)
Q Consensus       182 e~l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-----~~~~~-----------------  238 (342)
                      ..+...+...+++.+|.++|...           .-.+|+|||+ .||+.+|.     +..+.                 
T Consensus       305 ~~V~~~~sE~eLL~~F~~~i~~~-----------DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~  373 (919)
T 3iay_A          305 SMIFSHATEEEMLSNWRNFIIKV-----------DPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKES  373 (919)
T ss_dssp             BEEEEESSHHHHHHHHHHHHHHH-----------CCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCE
T ss_pred             CeEEECCCHHHHHHHHHHHHHHh-----------CCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCcccccccc
Confidence            34556678899999999999443           2259999998 58999985     11110                 


Q ss_pred             -------------------cceeeccccccccccCCCCccHHHHHHHHhCCcCCCCCCC-------------------cH
Q 019380          239 -------------------HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHD-------------------PY  280 (342)
Q Consensus       239 -------------------~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~-------------------A~  280 (342)
                                         ..++|+..+.+.. ....+|+|+.+|..+||.....-.++                   .+
T Consensus       374 ~~~~~~~g~~~~~~~~i~GR~~lDl~~~~k~~-~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~~~~~~L~~Y~~  452 (919)
T 3iay_A          374 VFSSKAYGTRETKNVNIDGRLQLDLLQFIQRE-YKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCL  452 (919)
T ss_dssp             EEEETTTEEEEECCBCCTTCEEEEHHHHHHHH-CCCSCCCHHHHHHHHHCCC------CCHHHHHTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccceeEEcCeEEEEhHHHHHhh-cCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcChhhHHHHHHHHH
Confidence                               0133443333322 24568999999999999763211221                   14


Q ss_pred             HHHHHHHHHHHHHH
Q 019380          281 EDCVSVMRLYKRFR  294 (342)
Q Consensus       281 ~Da~~t~~l~~~~~  294 (342)
                      .||..+++|+.++.
T Consensus       453 ~Da~l~~~L~~kl~  466 (919)
T 3iay_A          453 KDAYLPLRLMEKLM  466 (919)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            68999999988863

>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*

Probab=95.94  E-value=0.028  Score=57.38  Aligned_cols=145  Identities=16%  Similarity=0.232  Sum_probs=84.4

Q ss_pred             CCCCcceecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHH
Q 019380          121 CRGPKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEI  200 (342)
Q Consensus       121 ~~~~~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~  200 (342)
                      .+..++++||+|+.+.  +.+    ..+...+.....++ .+-.+..+.        .+..-.+.-.+...+++.+|.++
T Consensus       150 ~p~lrilsfDIE~~~~--g~i----~~I~~~~~~~~~v~-~l~~~~~~~--------~~~~~~V~~f~~E~~lL~~f~~~  214 (786)
T 3k59_A          150 RPPLKWVSIDIETTRH--GEL----YCIGLEGCGQRIVY-MLGPENGDA--------SSLDFELEYVASRPQLLEKLNAW  214 (786)
T ss_dssp             CCCCCEEEEEEEECTT--SCE----EEEEEEETTEEEEE-EESSCCSCC--------TTCSSEEEEESSHHHHHHHHHHH
T ss_pred             CCCCeEEEEEEEEcCC--CCE----EEEEecCCCCCeEE-EEecCCCCC--------CCCCceEEEeCCHHHHHHHHHHH
Confidence            5778899999999843  222    33344322222222 111121110        01112344456788999999999


Q ss_pred             HhcCCCccccccCCCCCeEEEeeCch-hhhhhcc-----ccCC----C-----------------------cceeecccc
Q 019380          201 LNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR-----MNYP----D-----------------------HMLRDTAKY  247 (342)
Q Consensus       201 l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~-----~~~~----~-----------------------~~~~Dt~~l  247 (342)
                      +.+.           .-.+|||||+. ||+.+|.     ...+    +                       ..++|...+
T Consensus       215 i~~~-----------dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~  283 (786)
T 3k59_A          215 FANY-----------DPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEA  283 (786)
T ss_dssp             HHHH-----------CCSEEEESSTTTTHHHHHHHHHHHHTCCCCCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHH
T ss_pred             HHHc-----------CCCEEEecCCccCcHHHHHHHHHHhCCCceeccCCCcccccccccCCCceeEEEcCEEEEEhHHH
Confidence            9543           22499999965 7999886     1111    0                       113344333


Q ss_pred             ccccccCCCCccHHHHHHHHhCCcCCCCCCCc----------------------HHHHHHHHHHHHHH
Q 019380          248 RPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDP----------------------YEDCVSVMRLYKRF  293 (342)
Q Consensus       248 ~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~A----------------------~~Da~~t~~l~~~~  293 (342)
                      .+.......+|+|+.+|..+||.. .. .|+.                      +.||..+++|+.++
T Consensus       284 lk~~~~~l~SysL~~Va~~~Lg~~-K~-~~~~~~~~~eI~~~~~~~~~~L~~Y~l~Da~L~~~L~~kl  349 (786)
T 3k59_A          284 LKSAFWNFSSFSLETVAQELLGEG-KS-IDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKT  349 (786)
T ss_dssp             HHHTTCCCSCCSHHHHHHHHHCCC-CC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCCCCCCCHHHHHHHHhCCC-Cc-ccCccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh
Confidence            332122457899999999998876 22 2332                      57999999999885

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=95.82  E-value=0.0025  Score=49.33  Aligned_cols=28  Identities=25%  Similarity=0.542  Sum_probs=24.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhh
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      .+|++||.|..|++.|.+.+.|..|+++
T Consensus        45 ~tGekpfyC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           45 LPGGGLHRCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             SGGGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCCcceEcccCcchhCCHHHHHHHHhh
Confidence            3588899999999999999999988876

>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}

Probab=95.46  E-value=0.02  Score=54.55  Aligned_cols=90  Identities=16%  Similarity=0.171  Sum_probs=65.2

Q ss_pred             HHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcc-ccCCCcceeeccccccccccCCCCccHHHHHHHHhCCcC
Q 019380          194 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLR-MNYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDI  272 (342)
Q Consensus       194 ~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~-~~~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~  272 (342)
                      +..|.+++              .+...|+|++..|+.+|. .......++||+..+..+.+ . +++|..|++.|+|...
T Consensus        84 l~~L~~lL--------------~d~~KV~h~~k~Dl~~L~~~gi~~~~~fDt~lAa~lL~~-~-~~gL~~L~~~~lg~~~  147 (440)
T 3cym_A           84 WNDFNRAV--------------GDAVWILHDSLQDLPGFDELGMEPQRLFDTEIAARLLGL-K-RFGLAAVTEHFLGLTL  147 (440)
T ss_dssp             HHHHHHHH--------------TTCEEEESSHHHHHHHHHHHTCCCCEEEEHHHHHHHTTC-S-SCSHHHHHHHHHCEEC
T ss_pred             HHHHHHHH--------------CCCCEEEEcCHHHHHHHHHcCCcCCceehHHHHHHHhCC-C-CCCHHHHHHHHhCCCc
Confidence            35677888              444789999999999986 11112368999765555554 3 8999999999988765


Q ss_pred             CCCCC---------C------cHHHHHHHHHHHHHHHhhhhh
Q 019380          273 QSGVH---------D------PYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       273 ~~~~H---------~------A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      ..+.-         +      |..||..+..||..+..+...
T Consensus       148 ~K~~~~sdw~~rpLs~~q~~YAa~Da~~Ll~L~~~L~~~L~~  189 (440)
T 3cym_A          148 AKEHSAADWSYRPLPRDWRNYAALDVELLIELETKMRAELKR  189 (440)
T ss_dssp             CCCCTTCCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred             ccccccCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            54311         2      678999999999998776543

>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*

Probab=94.85  E-value=0.082  Score=56.35  Aligned_cols=100  Identities=13%  Similarity=0.044  Sum_probs=64.9

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc--------ccCCC----------------
Q 019380          184 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR--------MNYPD----------------  238 (342)
Q Consensus       184 l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~--------~~~~~----------------  238 (342)
                      +.......+++..|.++|...           .-.||||||+ .||+.+|.        +..+.                
T Consensus       395 V~~~~sE~eLL~~F~~~I~~~-----------DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~~~GRl~r~~~~k~~~~~  463 (1193)
T 2gv9_A          395 VLEFDSEFEMLLAFMTLVKQY-----------GPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIG  463 (1193)
T ss_dssp             EEEESSHHHHHHHHHHHHHHH-----------CCSEEEESSTTTTHHHHHHHHHHHTTCCCCTTTSSBSSSCCEEECC--
T ss_pred             EEecCCHHHHHHHHHHHHHhc-----------CCCEEEEcCCcCccHHHHHHHHHHHcCCChHHhcccccCCcceeeccc
Confidence            444567889999999999543           2249999997 57998876        11110                


Q ss_pred             --------------cceeeccccccccccCCCCccHHHHHHHHhCCcCCCCCCC-------------------cHHHHHH
Q 019380          239 --------------HMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHD-------------------PYEDCVS  285 (342)
Q Consensus       239 --------------~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~-------------------A~~Da~~  285 (342)
                                    ..++|+..+.+... ...+|+|+.+|..+||.....-.+.                   .+.||..
T Consensus       464 ~~~f~~~~~~~i~GRv~lDl~~~~~~~~-kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~~~r~~L~~Ycl~Da~l  542 (1193)
T 2gv9_A          464 QSHFQKRSKIKVNGMVNIDMYGIITDKI-KLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQRGVIGEYCIQDSLL  542 (1193)
T ss_dssp             --------CEEETTBEEEEHHHHHTTTC-CCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             cccccccceEEEcCeEeehHHHHHHHHh-ccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence                          12345444333322 4568999999999988763221111                   2458999


Q ss_pred             HHHHHHHHHh
Q 019380          286 VMRLYKRFRR  295 (342)
Q Consensus       286 t~~l~~~~~~  295 (342)
                      +++||.+++.
T Consensus       543 t~~L~~kl~~  552 (1193)
T 2gv9_A          543 VGQLFFKFLP  552 (1193)
T ss_dssp             HHHHHHHHCH
T ss_pred             HHHHHHHHHH
Confidence            9999888743

>2d5r_A CCR4-NOT transcription complex subunit 7; poly(A) deadenylase, antiproliferative protein, transcription; 2.50A {Homo sapiens} SCOP: c.55.3.9

Probab=94.69  E-value=0.075  Score=46.47  Aligned_cols=77  Identities=13%  Similarity=0.114  Sum_probs=61.5

Q ss_pred             CCeEEEeeCchhhhhhcc-----cc---------------CCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCC
Q 019380          216 KARLLVGHGLEHDLDSLR-----MN---------------YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG  275 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~-----~~---------------~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~  275 (342)
                      ++..+|.++..+|+.+|-     ..               +|  .+.|+..+++....  ..-+|+.||+.+ |+.--+.
T Consensus       139 ~~v~Witfhg~yDf~yL~k~L~~~~LP~~~~~F~~~l~~~FP--~iyD~K~l~~~~~~--l~~gL~~la~~L-~v~r~g~  213 (252)
T 2d5r_A          139 EGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFP--VIYDVKYLMKSCKN--LKGGLQEVAEQL-ELERIGP  213 (252)
T ss_dssp             SSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCS--CEEEHHHHGGGCTT--CCSSHHHHHHHH-TCCCCSS
T ss_pred             CCceEEEecCcchHHHHHHHhcCCCCCCCHHHHHHHHHHHCc--chhhHHHHHHHhcc--cCCCHHHHHHHc-CCCccCc
Confidence            457899999999999865     11               34  37898888877642  356899999998 8885444


Q ss_pred             CCCcHHHHHHHHHHHHHHHhhh
Q 019380          276 VHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       276 ~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                      .|.|-.|+..|+.+|.++++..
T Consensus       214 ~HqAGsDsllT~~~F~km~~~~  235 (252)
T 2d5r_A          214 QHQAGSDSLLTGMAFFKMREMF  235 (252)
T ss_dssp             TTSHHHHHHHHHHHHHHHHHHT
T ss_pred             ccchhhhHHHHHHHHHHHHHHh
Confidence            8999999999999999998775

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.41  E-value=0.023  Score=35.54  Aligned_cols=24  Identities=33%  Similarity=0.591  Sum_probs=22.7

Q ss_pred             CcccccccccccCCHHHHHHHHhh
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      .+|.|+.|+..|.....|..||+-
T Consensus        11 ~~~~CPrCn~~f~~~~sLr~Hmky   34 (49)
T 2e72_A           11 GRKICPRCNAQFRVTEALRGHMCY   34 (49)
T ss_dssp             SCCCCTTTCCCCSSHHHHHHHHHH
T ss_pred             CceeCCcccccccchHHHHhhhhh
Confidence            689999999999999999999985

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.93  E-value=0.035  Score=34.72  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=22.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~  106 (342)
                      .|+.|++.|+....|++||+-..++.+
T Consensus        14 ~CPrCn~~f~~~~sLr~HmkycCp~~v   40 (49)
T 2e72_A           14 ICPRCNAQFRVTEALRGHMCYCCPEMV   40 (49)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHCTTTC
T ss_pred             eCCcccccccchHHHHhhhhhcCcchh
Confidence            489999999999999999996665544

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=93.57  E-value=0.062  Score=36.38  Aligned_cols=57  Identities=23%  Similarity=0.238  Sum_probs=38.1

Q ss_pred             cccccccCCHHHHHHHH-hhhccCCCCCccccCccccCChhhhhhhcCCCcccCCCCCcccCCcccccccccCChhhHHH
Q 019380           18 VACYKQFKRKDHLIEHM-KISYHSVHQPKCAVCQKLSKSFESLREHLTGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIK   96 (342)
Q Consensus        18 ~~C~k~f~~~~~L~~H~-~~~~H~~~~~~C~~C~~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~   96 (342)
                      ..|++.|.+...|..|+ +.  |.+.++.         .       ...+|.|..          ..|++.+.....|.+
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~--Hv~~~~~---------~-------~~~~~~C~W----------~~C~~~~~~~~~L~~   58 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKD--HVSQDFK---------H-------PMEPLACNW----------EDCDFLGDDTASIVN   58 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHH--SCCCCCC---------C-------SSCCEECCC----------SSCCCEESSHHHHHH
T ss_pred             CCCCCcCCCHHHHHHHHHhh--ccCcccC---------C-------CCCCCEeeC----------CCCcCCCCChHHHHh
Confidence            56999999999999998 46  7766431         0       012455521          356666666678999


Q ss_pred             HHhhcC
Q 019380           97 HKEACS  102 (342)
Q Consensus        97 H~~~h~  102 (342)
                      |++..|
T Consensus        59 Hir~~H   64 (64)
T 1zw8_A           59 HINAQH   64 (64)
T ss_dssp             HHHHHC
T ss_pred             hccccC
Confidence            988654

>1uoc_A POP2; hydrolase, DEDD nuclease, mRNA degradation, poly(A) tail, transcription regulation, repressor, phosphorylation.; 2.3A {Saccharomyces cerevisiae} SCOP: c.55.3.9

Probab=93.09  E-value=0.09  Score=46.84  Aligned_cols=79  Identities=13%  Similarity=0.044  Sum_probs=59.6

Q ss_pred             CCeEEEeeCchhhhhhcc-----cc---------------CCCcceeeccccccccccC-------------CCCccHHH
Q 019380          216 KARLLVGHGLEHDLDSLR-----MN---------------YPDHMLRDTAKYRPLMKTN-------------LVSHSLKY  262 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~-----~~---------------~~~~~~~Dt~~l~~~~~~~-------------~~~~~L~~  262 (342)
                      ++..+|.++..+|+.+|-     ..               +|  .+.|+..+.+.....             ..+.+|+.
T Consensus       154 ~~v~Witfhg~yDfgyL~k~Lt~~~LP~~~~~F~~~l~~~FP--~iyD~K~l~~~~~~l~~~~~~~~~~~~~~~~~~L~~  231 (289)
T 1uoc_A          154 DSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMP--NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTT  231 (289)
T ss_dssp             TTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCS--SEEEHHHHHHHHTTTCC-------------CCSHHH
T ss_pred             CCceEEEccCcchHHHHHHHhccccCCcCHHHHHHHHHHhCc--cceeHHHHHHHHHhccCcccccccccccccCCCHHH
Confidence            456889988999999765     11               34  377887766544221             13568999


Q ss_pred             HHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhh
Q 019380          263 LTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       263 l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                      ||+.+ |++..+..|.|=.|+..|+.+|.++++..
T Consensus       232 lA~~L-~v~r~g~~HqAGsDSllT~~~F~kl~~~~  265 (289)
T 1uoc_A          232 LADEL-GLPRFSIFTTTGGQSLLMLLSFCQLSKLS  265 (289)
T ss_dssp             HHHHT-TCCCCGGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHc-CCCccCcccccHHHHHHHHHHHHHHHHHH
Confidence            99998 98855558999999999999999999775

>1zu1_A DSRBP-ZFA, RNA binding protein ZFA; zinc finger protein, helix-loop-helix, helix-turn-helix; NMR {Xenopus laevis} SCOP: g.37.1.4 g.37.1.4

Probab=92.50  E-value=0.077  Score=41.32  Aligned_cols=74  Identities=19%  Similarity=0.276  Sum_probs=44.4

Q ss_pred             CCcccccccccccCCHHHHHHHH--hhhccCCC-CC-ccccCc-------cccCChhhhhhhcCCCcccCCCCCcccCCc
Q 019380           12 TARHKCVACYKQFKRKDHLIEHM--KISYHSVH-QP-KCAVCQ-------KLSKSFESLREHLTGPLSKAHCSGIFSDRG   80 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~--~~~~H~~~-~~-~C~~C~-------~~f~~~~~l~~H~~~~~~C~~C~k~f~~~~   80 (342)
                      -+++.|..|+..|.+...+..|.  +.  |... +. .+. ++       +.+...    .+...       ...-....
T Consensus        30 ~~~~~C~~C~v~~~S~s~~~~H~~gkk--H~~~v~~~~~~-~~~~~~~~~~~~~~~----~~~~~-------~~~~~~~~   95 (127)
T 1zu1_A           30 FSDTQCKVCSAVLISESQKLAHYQSRK--HANKVRRYMAI-NQGEDSVPAKKFKAA----PAEIS-------DGEDRSKC   95 (127)
T ss_dssp             BCSSEETTTTEECCSHHHHHHHHHCHH--HHHHHHHHHHH-TTCCCCCSCCCCSCC----SSCCS-------SCCCTTTE
T ss_pred             CCCCcCcCCCCEeCCHHHHHHHHCcHH--HHHHHHHHhcc-cCcccCCCCCccCCC----ccccc-------cCCCCCeE
Confidence            46799999999999999999998  45  5422 11 111 11       111100    00000       00001114


Q ss_pred             ccccccccCChhhHHHHHh
Q 019380           81 CNLCMNIFDSPSSLIKHKE   99 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~   99 (342)
                      |..|++.|.....+..|..
T Consensus        96 C~~C~~~f~s~~~~~~H~~  114 (127)
T 1zu1_A           96 CPVCNMTFSSPVVAESHYI  114 (127)
T ss_dssp             ETTTTEECSSHHHHHHHHT
T ss_pred             cCCCCCEeCCHHHHHHHHC
Confidence            8999999999999999985

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=90.46  E-value=0.19  Score=33.87  Aligned_cols=34  Identities=15%  Similarity=0.136  Sum_probs=27.2

Q ss_pred             cccccccCChhhHHHHH-hhcCCCC------CCCCc--ccccc
Q 019380           82 NLCMNIFDSPSSLIKHK-EACSLSA------PVPFK--ISGAI  115 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~-~~h~~~~------~~~~~--~c~~~  115 (342)
                      ..|++.|.....|..|+ +.|.+.+      ++.|.  .|+..
T Consensus         7 ~~C~~~f~~~~~l~~Hv~~~Hv~~~~~~~~~~~~C~W~~C~~~   49 (64)
T 1zw8_A            7 KECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFL   49 (64)
T ss_dssp             TTCCCCCSSHHHHHHHHHHHSCCCCCCCSSCCEECCCSSCCCE
T ss_pred             CCCCCcCCCHHHHHHHHHhhccCcccCCCCCCCEeeCCCCcCC
Confidence            35889999999999998 5787766      99985  66544

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=89.63  E-value=0.24  Score=28.84  Aligned_cols=26  Identities=27%  Similarity=0.583  Sum_probs=22.6

Q ss_pred             ccccccccccCCHHHHHHHHhhhccCC
Q 019380           15 HKCVACYKQFKRKDHLIEHMKISYHSV   41 (342)
Q Consensus        15 ~~C~~C~k~f~~~~~L~~H~~~~~H~~   41 (342)
                      |.||.|-+.|.+...|..|-... |+.
T Consensus         6 FiCP~C~~~l~s~~~L~~Hye~~-H~~   31 (34)
T 3mjh_B            6 FICPQCMKSLGSADELFKHYEAV-HDA   31 (34)
T ss_dssp             EECTTTCCEESSHHHHHHHHHHH-TSS
T ss_pred             cCCcHHHHHcCCHHHHHHHHHhc-ccc
Confidence            99999999999999999998653 654

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=88.50  E-value=0.12  Score=39.96  Aligned_cols=21  Identities=24%  Similarity=0.468  Sum_probs=16.4

Q ss_pred             cccccccccCChhhHHHHHhh
Q 019380           80 GCNLCMNIFDSPSSLIKHKEA  100 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~  100 (342)
                      .|..|++.|.+.++|..|+++
T Consensus        52 yC~~C~K~F~~~~~L~~H~rs   72 (124)
T 1zr9_A           52 RCLACARYFIDSTNLKTHFRS   72 (124)
T ss_dssp             EETTTTEECSSHHHHHHHTTC
T ss_pred             EcccCcchhCCHHHHHHHHhh
Confidence            357788888888888888765

>1fu9_A U-shaped transcriptional cofactor; zinc-finger, beta-hairpin + alpha-helix; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1jn7_A

Probab=85.74  E-value=0.74  Score=26.93  Aligned_cols=28  Identities=14%  Similarity=0.382  Sum_probs=23.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhh
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      +.+..++.|..|+-+|..-..+..|++-
T Consensus         3 ~~~~~~~~C~~C~IsF~~l~ty~aHKk~   30 (36)
T 1fu9_A            3 AAEVMKKYCSTCDISFNYVKTYLAHKQF   30 (36)
T ss_dssp             CCCCCCSEETTTTEECSSHHHHHHHHHH
T ss_pred             CCccCcCeeccccceehhhHHHhhhhee
Confidence            3456689999999999999999999875

>2jsp_A Transcriptional regulatory protein ROS; prokaryotic Cys2His2 zinc finger, gene regulation; NMR {Agrobacterium tumefaciens}

Probab=82.74  E-value=0.45  Score=34.08  Aligned_cols=26  Identities=27%  Similarity=0.474  Sum_probs=22.6

Q ss_pred             ccccccccCChhhHHHHHhhcCCCCCCCC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACSLSAPVPF  109 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~~~~~~~~  109 (342)
                      |-+||+.|.   .|.+|...|||..|...
T Consensus        24 ClecGK~fK---~LkRHL~~~hgltpeeY   49 (87)
T 2jsp_A           24 CLECGGSFK---SLKRHLTTHHSMTPEEY   49 (87)
T ss_dssp             CTBTCCEES---BHHHHHHHTTCSCHHHH
T ss_pred             ecccchhhH---HHHHHHHHccCCCHHHH
Confidence            899999998   58899999999888664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d1wlja_	173	c.55.3.5 (A:) Interferon-stimulated gene 20 kDa pr	1e-17
d1y97a1	228	c.55.3.5 (A:1-228) Three prime repair exonuclease	5e-05
d1w0ha_	200	c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapien	9e-05
d3b6oa1	226	c.55.3.5 (A:9-234) Three prime repair exonuclease	0.003
d2adra1	29	g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Sac	0.004

>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Interferon-stimulated gene 20 kDa protein, ISG20
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.0 bits (188), Expect = 1e-17
 Identities = 50/175 (28%), Positives = 83/175 (47%), Gaps = 21/175 (12%)

Query: 127 VAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKN 186
           VAMDCEMVG          AR  LV+    V++  +++P+  +T+YR  V+G+T + +  
Sbjct: 3   VAMDCEMVGL-GPHRESGLARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVG 61

Query: 187 AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDHMLRDTAK 246
           A P    + +IL++L                   VGH L+HD  +L+ +   + + DT+ 
Sbjct: 62  ATPFAVARLEILQLLKGKLV--------------VGHDLKHDFQALKEDMSGYTIYDTST 107

Query: 247 YRPLMKTNLV----SHSLKYLTRTYLGYDIQSGV--HDPYEDCVSVMRLYKRFRR 295
            R L +   +      SL+ L+   L   IQ+ +  H   ED  + M LY+  +R
Sbjct: 108 DRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHSSVEDARATMELYQISQR 162

>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Three prime repair exonuclease 2, TREX2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (96), Expect = 5e-05
 Identities = 21/161 (13%), Positives = 45/161 (27%), Gaps = 14/161 (8%)

Query: 159 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKD--KILEILNNGESTGRLMLDDGK 216
               + P+ P T    E+TGL+ E +             + L+   + ++    ++    
Sbjct: 60  LTLCMCPERPFTAKASEITGLSSEGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNG 119

Query: 217 ARLLVGHGLEHDLDSLRMNYPDHMLR----------DTAKYRPLMKTNLVSHSLKYLTRT 266
                   L  +L  L    P   +           D A            +SL  L   
Sbjct: 120 FDYDFPL-LCAELRRLGARLPRDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHR 178

Query: 267 YLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEIGNQN 307
           Y   +     H    D  +++ ++     +     +   + 
Sbjct: 179 YFRAEPS-AAHSAEGDVHTLLLIFLHRAAELLAWADEQARG 218

>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]} Length = 200

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease ERI1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 9e-05
 Identities = 29/188 (15%), Positives = 62/188 (32%), Gaps = 14/188 (7%)

Query: 127 VAMDCEMVG--GGSNGTLDL-----CARVCLVDEDENVIFHTYVQPQL--PVTNYRYEVT 177
             +D E     G     +          +     +    F  YV+P++   ++++   +T
Sbjct: 9   CIIDFEATCEEGNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLT 68

Query: 178 GLTEEDIKNAMPLKEVKDKILEILNNGESTG-RLMLDDGKARLLVGHGLEHDLDSLRMNY 236
           G+T++ +  A    +V  K+++ +   E                +   L       R+ Y
Sbjct: 69  GITQDQVDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDGSWDMSKFLNIQCQLSRLKY 128

Query: 237 PDHMLR--DTAK-YRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRF 293
           P    +  +  K Y    K       L  +    LG D     H   +D  ++ R+  R 
Sbjct: 129 PPFAKKWINIRKSYGNFYKVPRSQTKLTIMLE-KLGMDYDGRPHCGLDDSKNIARIAVRM 187

Query: 294 RRQDHQVE 301
            +   ++ 
Sbjct: 188 LQDGCELR 195

>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 226

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Three prime repair exonuclease 1, TREX1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 17/156 (10%), Positives = 44/156 (28%), Gaps = 26/156 (16%)

Query: 159 FHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNGESTGRLMLDDGKAR 218
               + P    +    E+TGL++ +++     +   +               +    +  
Sbjct: 59  LSLCIAPGKACSPGASEITGLSKAELEVQGRQRFDDNLA-------ILLRAFLQRQPQPC 111

Query: 219 LLVGHGLEHDLDSL------RMNYPDHMLRDTAKY------------RPLMKTNLVSHSL 260
            LV H  +     L      R++ P  +                    P    +  S+SL
Sbjct: 112 CLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAALKALEQASSPSGNGSRKSYSL 171

Query: 261 KYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQ 296
             +          +  H    D ++++ + +   + 
Sbjct: 172 GSIYTRLYWQAP-TDSHTAEGDVLTLLSICQWKPQA 206

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence} Length = 29

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

 Score = 32.2 bits (74), Expect = 0.004
 Identities = 7/22 (31%), Positives = 11/22 (50%)

Query: 15 HKCVACYKQFKRKDHLIEHMKI 36
            C  C + F R++HL  H + 
Sbjct: 3  FVCEVCTRAFARQEHLKRHYRS 24

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1wlja_	173	Interferon-stimulated gene 20 kDa protein, ISG20 {	99.96
d2guia1	174	N-terminal exonuclease domain of the epsilon subun	99.9
d3b6oa1	226	Three prime repair exonuclease 1, TREX1 {Mouse (Mu	99.86
d1y97a1	228	Three prime repair exonuclease 2, TREX2 {Human (Ho	99.84
d1w0ha_	200	Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 960	99.82
d2f96a1	202	Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287	99.67
d2qxfa1	467	Exonuclease I {Escherichia coli K12 (Escherichia c	99.66
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	99.31
d2igia1	180	Oligoribonuclease {Escherichia coli [TaxId: 562]}	99.27
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.97
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	98.95
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.93
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.92
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.87
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.84
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.83
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	98.82
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.79
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.73
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	98.7
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	98.68
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	98.55
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.52
d1kfsa1	195	Exonuclease domain of prokaryotic DNA polymerase {	98.51
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.44
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.44
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	98.38
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.35
d1yt3a3	193	Ribonuclease D, catalytic domain {Escherichia coli	98.35
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.33
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.32
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	98.3
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	98.29
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	98.25
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.23
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	98.21
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	98.2
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.19
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	98.16
d2d5ra1	252	CCR4-NOT transcription complex subunit 7, CAF1 {Hu	98.16
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.14
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	98.11
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	98.07
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	98.01
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	97.99
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.99
d2hbka2	292	Exosome complex exonuclease RRP6 {Baker's yeast (S	97.93
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	97.92
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	97.92
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.89
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.87
d2hhva1	171	Exonuclease domain of prokaryotic DNA polymerase {	97.85
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	97.83
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.82
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	97.79
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	97.76
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.73
d1vk0a_	206	Hypothetical protein AT5G06450 {Thale-cress (Arabi	97.65
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	97.63
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.59
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	97.57
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	97.54
d2epra1	35	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.46
d1x9ma1	204	Exonuclease domain of T7 DNA polymerase {Bacteriop	97.35
d1tgoa1	347	Exonuclease domain of family B DNA polymerases {Ar	97.35
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	97.12
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	96.89
d2dlqa4	27	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.88
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	96.84
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.84
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.82
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	96.7
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.63
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.61
d1uoca_	286	Pop2 RNase D domain {Baker's yeast (Saccharomyces	96.59
d1znfa_	26	XFIN, third domain {Xenopus laevis [TaxId: 8355]}	96.59
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	96.58
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	96.51
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.38
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	96.36
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	96.21
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	96.21
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.19
d1q8ia1	388	Exonuclease domain of family B DNA polymerases {Es	96.08
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	96.0
d2j7ja2	29	Transcription factor IIIA, TFIIIA {Xenopus laevis	95.98
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	95.86
d2dlqa3	30	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.86
d2dlqa2	28	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	95.82
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	95.79
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	95.77
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	95.75
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	95.5
d1s5ja1	410	Exonuclease domain of family B DNA polymerases {Su	95.3
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	94.94
d1tf3a2	30	Transcription factor IIIA, TFIIIA {Xenopus laevis	94.64
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	94.11
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	94.02
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	93.79
d1x5wa1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	93.34
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	93.3
d1noya_	372	Exonuclease domain of family B DNA polymerases {Ba	92.95
d2dmda1	28	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	92.73
d1x6ha1	37	Transcriptional repressor CTCF {Human (Homo sapien	92.45
d2dmda3	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	91.97
d1ih7a1	375	Exonuclease domain of family B DNA polymerases {Ba	91.57
d1bhia_	38	Transactivation domain of cre-bp1/atf-2 {Human (Ho	91.43
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	90.97
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	90.44
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	90.28
d2glia4	31	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	90.26
d2eppa1	53	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	89.58
d1ubdc1	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	89.53
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	89.11
d2glia2	33	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	88.68
d2ct1a1	28	Transcriptional repressor CTCF {Human (Homo sapien	88.38
d1y0jb1	36	U-shaped transcription factor, different fingers {	88.06
d1x5wa2	29	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	87.25
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	87.01
d1vd4a_	62	Transcription initiation factor TFIIE-alpha {Human	86.16
d2drpa2	26	Tramtrack protein (two zinc-finger peptide) {Droso	86.08
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	84.99
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	84.91
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	82.97
d1tf3a1	31	Transcription factor IIIA, TFIIIA {Xenopus laevis	82.86
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	81.99
d1yuza2	36	Nigerythrin, C-terminal domain {Desulfovibrio vulg	81.24
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	80.22
d1y0jb1	36	U-shaped transcription factor, different fingers {	80.19

>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Interferon-stimulated gene 20 kDa protein, ISG20
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.2e-30  Score=218.55  Aligned_cols=157  Identities=33%  Similarity=0.530  Sum_probs=132.9

Q ss_pred             cceecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcC
Q 019380          125 KAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  204 (342)
Q Consensus       125 ~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~~~  204 (342)
                      .+|++||||||+++.....+ ..+++++.+|+++|+++++|..+++++++.+||||++++.++|+|.+++++|.+|+   
T Consensus         1 ~~v~iD~EttGl~~~~~~ii-~~~~iv~~~g~~i~~~~v~p~~~i~~~~~~i~GIt~e~~~~~~~~~~~~~~~~~~~---   76 (173)
T d1wlja_           1 EVVAMDCEMVGLGPHRESGL-ARCSLVNVHGAVLYDKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVARLEILQLL---   76 (173)
T ss_dssp             CEEEEEEEEEEETTTTEEEE-EEEEEECTTCCEEEEEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHHHHHHHHHH---
T ss_pred             CEEEEEEEcCCCCCCCCcEE-EEEEEEEecCeEEEEEeeecccccCcceeEEecCcchhhhcCCcHHHHHHHHHhhc---
Confidence            47999999999976665545 77888899999999999999999999999999999999999999999999999999   


Q ss_pred             CCccccccCCCCCeEEEeeCchhhhhhccccCCCc----ceeeccccccccccCCCCccHHHHHHHHhCCcCCC--CCCC
Q 019380          205 ESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYPDH----MLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS--GVHD  278 (342)
Q Consensus       205 ~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~~~----~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~--~~H~  278 (342)
                                 .+.+|||||+.||++||+...+..    ..+|++.+++..++...+++|+.|++.|+++.++.  .+|+
T Consensus        77 -----------~~~~lv~hn~~fD~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~~~~~~~~i~~~~~~H~  145 (173)
T d1wlja_          77 -----------KGKLVVGHDLKHDFQALKEDMSGYTIYDTSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNSLLGHS  145 (173)
T ss_dssp             -----------TTSEEEESSHHHHHHHTTCCCTTCEEEEGGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCCTTCCC
T ss_pred             -----------ccceEEeechHhHHHHHHHhhccCcccchhHHHHHHHHHhhcccCCcCHHHHHHHHhCCcccCCCCCCC
Confidence                       888999999999999999776653    34566667777777778899999999998888754  3799


Q ss_pred             cHHHHHHHHHHHHHHHhh
Q 019380          279 PYEDCVSVMRLYKRFRRQ  296 (342)
Q Consensus       279 A~~Da~~t~~l~~~~~~~  296 (342)
                      |++||++|++||+.+.+-
T Consensus       146 Al~Da~at~~l~~~~~~~  163 (173)
T d1wlja_         146 SVEDARATMELYQISQRI  163 (173)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHH
Confidence            999999999999766654

>d2guia1 c.55.3.5 (A:7-180) N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: N-terminal exonuclease domain of the epsilon subunit of DNA polymerase III
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=2.3e-24  Score=179.61  Aligned_cols=151  Identities=21%  Similarity=0.340  Sum_probs=126.2

Q ss_pred             cceecccccccccC-------CCcccccceEEeecCCCCe---EEeeecCCCCCccccccccCCCCHhhhcCCCChHHHH
Q 019380          125 KAVAMDCEMVGGGS-------NGTLDLCARVCLVDEDENV---IFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVK  194 (342)
Q Consensus       125 ~~v~~D~Ettg~~~-------~~~~~il~~v~vv~~~~~~---~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~  194 (342)
                      ++|+||+||||+++       ++++|+ +.+.+.  ++.+   .|+.+|+|..+++..++++|||+++++.++|++.+++
T Consensus         1 r~vv~D~ETTGl~~~~~~~~~d~IIeI-g~v~~~--~~~~~~~~~~~~v~P~~~i~~~~~~i~gIt~e~~~~~~~~~~~~   77 (174)
T d2guia1           1 RQIVLDTETTGMNQIGAHYEGHKIIEI-GAVEVV--NRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVA   77 (174)
T ss_dssp             EEEEEEEEESCCCSSSSTTTTCCEEEE-EEEEEE--TTEECSCCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHHHHH
T ss_pred             CEEEEEeeCCCCCcccccCCCCEEEEE-EEEEEE--CCEEeeeEEEEEeccCccchhhhhhccccchhhhhcchhHHHHH
Confidence            46899999999874       457777 666553  3333   4999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc-------CC----CcceeeccccccccccCCCCccHHHH
Q 019380          195 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YP----DHMLRDTAKYRPLMKTNLVSHSLKYL  263 (342)
Q Consensus       195 ~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-------~~----~~~~~Dt~~l~~~~~~~~~~~~L~~l  263 (342)
                      .+|.+|+              ++..+||||..+|+.++...       .+    ...++|+..+++..++. ..++|..+
T Consensus        78 ~~~~~~~--------------~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-~~~~L~~l  142 (174)
T d2guia1          78 DEFMDYI--------------RGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPG-KRNSLDAL  142 (174)
T ss_dssp             HHHHHHH--------------TTSEEEETTHHHHHHHHHHHHHHTCSCCCCGGGTSEEEEHHHHHHHHSTT-SCCSHHHH
T ss_pred             HHHHHhc--------------CCCeEEEeecchhhHHHHHHHHHhCCCCCCcccccchhhHHHHHHHHcCC-CCCCHHHH
Confidence            9999999              88899999999999998811       11    15568999988887765 46799999


Q ss_pred             HHHHhCCcCCCC-CCCcHHHHHHHHHHHHHHH
Q 019380          264 TRTYLGYDIQSG-VHDPYEDCVSVMRLYKRFR  294 (342)
Q Consensus       264 ~~~~~~~~~~~~-~H~A~~Da~~t~~l~~~~~  294 (342)
                      +..| |++.... +|+|++||++|++||.++.
T Consensus       143 ~~~~-~~~~~~~~~H~Al~Da~~ta~v~~~l~  173 (174)
T d2guia1         143 CARY-EIDNSKRTLHGALLDAQILAEVYLAMT  173 (174)
T ss_dssp             HHHT-TCCCTTCSSCCHHHHHHHHHHHHHHHT
T ss_pred             HHHc-CCCCCCCCCcCHHHHHHHHHHHHHHHc
Confidence            9998 8875544 7999999999999999875

>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Three prime repair exonuclease 1, TREX1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.86  E-value=9.9e-23  Score=177.44  Aligned_cols=165  Identities=14%  Similarity=0.101  Sum_probs=122.8

Q ss_pred             CCcceeccccccccc--CCCcccccceEEeecC-----------------CC--CeEEeeecCCCCCccccccccCCCCH
Q 019380          123 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDE-----------------DE--NVIFHTYVQPQLPVTNYRYEVTGLTE  181 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~-----------------~~--~~~~~~lv~p~~~i~~~~~~i~GIt~  181 (342)
                      ...+|+||+||||+.  .+.++++ +.+.+.+.                 .+  ...|+.+|+|..+|++.++++||||+
T Consensus         3 ~~~~v~~D~ETTGl~~~~~~Iiei-a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~P~~~I~~~~~~i~GIt~   81 (226)
T d3b6oa1           3 MQTLIFLDLEATGLPSSRPEVTEL-CLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGLSK   81 (226)
T ss_dssp             CCEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHHTSCCCCSSSCCCCCCCSSCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred             CCeEEEEEEECCCCCCCCCceEEE-EEEEEeCCcccccccccccccccccccceeceeeeeECCCCCCCHHHHHhcCCCH
Confidence            356899999999985  6677877 66655321                 11  12589999999999999999999999


Q ss_pred             hhhcCCC--C-hHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-------ccCC--Ccceeeccccc
Q 019380          182 EDIKNAM--P-LKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNYP--DHMLRDTAKYR  248 (342)
Q Consensus       182 e~l~~~~--~-~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~~--~~~~~Dt~~l~  248 (342)
                      +++.+++  + ++++.+.+..|+...          +++.+|||||. .||+.||+       +..+  ....+||+.++
T Consensus        82 ~~l~~~~~~~~~~~~~~~~~~f~~~~----------~~~~~lVahN~~~FD~~~l~~~~~r~~~~~~~~~~~~iDtl~l~  151 (226)
T d3b6oa1          82 AELEVQGRQRFDDNLAILLRAFLQRQ----------PQPCCLVAHNGDRYDFPLLQTELARLSTPSPLDGTFCVDSIAAL  151 (226)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHTS----------CSSEEEEETTTTTTHHHHHHHHHHTSSSCCTTTTCEEEEHHHHH
T ss_pred             HHHHhcccchhHHHHHHHHHHHHHhc----------cCCceEEEechhHHHHHHHHHHHHHcCCCCCCCcchHHHHHHHH
Confidence            9998763  2 344555555555211          26678999995 89999998       2222  24568999887


Q ss_pred             ccccc--------CCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          249 PLMKT--------NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       249 ~~~~~--------~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      +.+.+        ....++|.+|+..+.|++ ..++|+|++||++|++||+++.++..+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~L~~l~~~~~g~~-~~~aH~Al~D~~~~~~l~~~~~~~l~~  209 (226)
T d3b6oa1         152 KALEQASSPSGNGSRKSYSLGSIYTRLYWQA-PTDSHTAEGDVLTLLSICQWKPQALLQ  209 (226)
T ss_dssp             HHHHTC---------CCCSHHHHHHHHHSSC-CSSTTSHHHHHHHHHHHHTSSHHHHHH
T ss_pred             HHhcccccccccccccCcchHHHHHHHcCCC-CCCCcChHHHHHHHHHHHHHHHHHHHH
Confidence            76543        234689999999887988 456999999999999999998877544

>d1y97a1 c.55.3.5 (A:1-228) Three prime repair exonuclease 2, TREX2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Three prime repair exonuclease 2, TREX2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.1e-21  Score=169.05  Aligned_cols=167  Identities=18%  Similarity=0.180  Sum_probs=121.1

Q ss_pred             CCCcceeccccccccc--CCCcccccceEEeecCC----------------CCeEEeeecCCCCCccccccccCCCCHhh
Q 019380          122 RGPKAVAMDCEMVGGG--SNGTLDLCARVCLVDED----------------ENVIFHTYVQPQLPVTNYRYEVTGLTEED  183 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~----------------~~~~~~~lv~p~~~i~~~~~~i~GIt~e~  183 (342)
                      ....||+||+||||++  .+.++++ +.+.+.+..                ....|+.+|+|..+|++.++++||||+++
T Consensus         6 ~~~~~v~~D~ETTGl~~~~~~Iiei-a~i~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~v~P~~~i~~~~~~itGIt~~~   84 (228)
T d1y97a1           6 RAETFVFLDLEATGLPSVEPEIAEL-SLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSSEG   84 (228)
T ss_dssp             CCSEEEEEEEEESSCGGGCCCEEEE-EEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCHHH
T ss_pred             CCCEEEEEEEecCCcCCCCCCeEEE-EEEEEECCccccccccccccccccceecceeeEECCCCCCCHHHHHhcCCCHHH
Confidence            3456999999999985  5777777 666664221                12248999999999999999999999999


Q ss_pred             hcCCC--ChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeC-chhhhhhcc-------ccCCC-cceeeccccccccc
Q 019380          184 IKNAM--PLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLR-------MNYPD-HMLRDTAKYRPLMK  252 (342)
Q Consensus       184 l~~~~--~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~-------~~~~~-~~~~Dt~~l~~~~~  252 (342)
                      |.+++  ++.++..++...+.+..         .++.++|||| +.||+.+|+       +..|. ..++||+.+++.+.
T Consensus        85 l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~v~~n~~~fD~~~l~~~l~r~~~~~~~~~~~iDtl~~~r~l~  155 (228)
T d1y97a1          85 LARCRKAGFDGAVVRTLQAFLSRQ---------AGPICLVAHNGFDYDFPLLCAELRRLGARLPRDTVCLDTLPALRGLD  155 (228)
T ss_dssp             HHHTTCCCSCHHHHHHHHHHHTTS---------CSSEEEEETTTTTTHHHHHHHHHHHHTCCCCTTCEEEEHHHHHHHHH
T ss_pred             HHhccCcchHHHHHHHHHHHhhhc---------cCCceEEeechHHHhHHHHHHHHHHcCCCCCCCcchhhHHHHHHHhh
Confidence            98774  44555555544443332         2678999999 589999997       23443 66789988776543


Q ss_pred             c---------CCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          253 T---------NLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       253 ~---------~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      .         ...+++|..|++.|.|.. ...+|+|++||++|++||.++..+..+
T Consensus       156 ~~~~~~~~~~~~~~~~L~~l~~~~~~~~-~~~aH~Al~Da~at~~l~~~~~~~l~~  210 (228)
T d1y97a1         156 RAHSHGTRARGRQGYSLGSLFHRYFRAE-PSAAHSAEGDVHTLLLIFLHRAAELLA  210 (228)
T ss_dssp             HHC----------CCSHHHHHHHHHSSC-CC---CHHHHHHHHHHHHHHTHHHHHH
T ss_pred             hhcccccccCcCCCcCHHHHHHHhcCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            2         334679999999987777 446999999999999999988766443

>d1w0ha_ c.55.3.5 (A:) Exonuclease ERI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease ERI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.2e-20  Score=160.69  Aligned_cols=167  Identities=16%  Similarity=0.234  Sum_probs=125.1

Q ss_pred             Ccceecccccccc----c--CCCcccccceEEeecCCCCe--EEeeecCCC--CCccccccccCCCCHhhhcCCCChHHH
Q 019380          124 PKAVAMDCEMVGG----G--SNGTLDLCARVCLVDEDENV--IFHTYVQPQ--LPVTNYRYEVTGLTEEDIKNAMPLKEV  193 (342)
Q Consensus       124 ~~~v~~D~Ettg~----~--~~~~~~il~~v~vv~~~~~~--~~~~lv~p~--~~i~~~~~~i~GIt~e~l~~~~~~~~v  193 (342)
                      ..+|++|+||||.    .  ...++|+ +++.+-..++.+  .|+.+|+|.  .++++.++.+||||++++.+++++.+|
T Consensus         6 ~~~iv~D~EtT~~~~~~~~~~~~Iiei-gav~~d~~~~~~~~~f~~~v~P~~~~~i~~~~~~itgit~e~l~~~~~~~~~   84 (200)
T d1w0ha_           6 DYICIIDFEATCEEGNPPEFVHEIIEF-PVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQV   84 (200)
T ss_dssp             SEEEECCCEECCCTTCCTTSCCCEEEE-EEEEEETTTCSEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHHH
T ss_pred             CEEEEEEEecCCCCCCCCCCCCcEEEE-EEEEEECCCCeEEEEEEEEEecCccccCCHHHHHHHCCCHHHhhhhhhhHhH
Confidence            3589999999932    1  3446777 666553345666  489999995  478899999999999999999999999


Q ss_pred             HHHHHHHHhcCCCccccccCCCCCeEEEeeCchh-hhhhcc-------ccCCC--cceeeccccccccccC-CCCccHHH
Q 019380          194 KDKILEILNNGESTGRLMLDDGKARLLVGHGLEH-DLDSLR-------MNYPD--HMLRDTAKYRPLMKTN-LVSHSLKY  262 (342)
Q Consensus       194 ~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~-D~~~l~-------~~~~~--~~~~Dt~~l~~~~~~~-~~~~~L~~  262 (342)
                      +++|.+|+.....       ...+.+++++|..+ |..+|+       +..|.  ..++|+..++....+. ..+.+|..
T Consensus        85 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~d~~~~L~~~~~~~~~~~p~~~~~~~d~~~~~~~~~~~~~~~~~L~~  157 (200)
T d1w0ha_          85 LKKVIDWMKLKEL-------GTKYKYSLLTDGSWDMSKFLNIQCQLSRLKYPPFAKKWINIRKSYGNFYKVPRSQTKLTI  157 (200)
T ss_dssp             HHHHHHHHHHTTB-------TTTBCEEEEESSTTTTHHHHHHHHHHHTCCCCGGGSEEEEHHHHHHHHHTCCGGGCSHHH
T ss_pred             HHHHHHHhcCCcE-------EeeeeeeeccchhhhHHHHHHHHHHhccCCCcccccceeeHHhHhhhhccccccchHHHH
Confidence            9999999955421       12444555555555 456776       33333  5678988776655442 33679999


Q ss_pred             HHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhh
Q 019380          263 LTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       263 l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      |+++| |++..+.+|+|++||++|++|+.++++++..
T Consensus       158 l~~~~-gi~~~~~aH~Al~Da~~~a~v~~~ll~~g~~  193 (200)
T d1w0ha_         158 MLEKL-GMDYDGRPHCGLDDSKNIARIAVRMLQDGCE  193 (200)
T ss_dssp             HHHHT-TCCCCSCTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHc-CCCCCCCCcChHHHHHHHHHHHHHHHHcCCC
Confidence            99988 9997666899999999999999999988755

>d2f96a1 c.55.3.5 (A:19-220) Ribonuclease T {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Ribonuclease T
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.67  E-value=3.7e-17  Score=138.21  Aligned_cols=163  Identities=18%  Similarity=0.174  Sum_probs=116.8

Q ss_pred             eeccccccccc--CCCcccccceEEee-cCCCCeE------EeeecCCCCCccccccccCCCCHhhhcCCC-C----hHH
Q 019380          127 VAMDCEMVGGG--SNGTLDLCARVCLV-DEDENVI------FHTYVQPQLPVTNYRYEVTGLTEEDIKNAM-P----LKE  192 (342)
Q Consensus       127 v~~D~Ettg~~--~~~~~~il~~v~vv-~~~~~~~------~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~-~----~~~  192 (342)
                      |+||+||||++  .+.++|+ +++.+. +.++...      +...+.|..++.+.+..+|||+++++.+++ .    +.+
T Consensus        14 Vv~D~ETTGl~~~~~~IIei-gav~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~git~~~~~~~~~~~~~~~~~   92 (202)
T d2f96a1          14 VVVDVETGGFNSATDALLEI-AATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMAVQEEAALTE   92 (202)
T ss_dssp             EEEEEEESSSCTTTBCEEEE-EEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCCBCHHHHHHH
T ss_pred             EEEEEeCCCCCCCCCceEEE-EEEEEEecccCceecceeEEEeeccCccccCCHHHHHhcCCcHHHHHhcccchhHHHHH
Confidence            79999999986  4567777 776654 2233332      234445667899999999999999988764 3    444


Q ss_pred             HHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhcccc-------CCCcceeeccccccccccCCCCccHHHHHH
Q 019380          193 VKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMN-------YPDHMLRDTAKYRPLMKTNLVSHSLKYLTR  265 (342)
Q Consensus       193 v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~-------~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~  265 (342)
                      ++..+..++...         .....++++|+..+|..+++..       .+.....|+..............+|..++.
T Consensus        93 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~  163 (202)
T d2f96a1          93 IFRGIRKALKAN---------GCKRAILVGHNSSFDLGFLNAAVARTGIKRNPFHPFSSFDTATLAGLAYGQTVLAKACQ  163 (202)
T ss_dssp             HHHHHHHHHHHT---------TCSEEEEEETTHHHHHHHHHHHHHHHTCCCCCEEEEEEEEHHHHHHHHHSCCSHHHHHH
T ss_pred             HHHHHHHHHHhh---------cccccceeeeehhhhHHHHHHHHHHhCCCcCCCcccchhhhhhhhhcccCCcCHHHHHH
Confidence            555555555221         1256789999999999998721       222344565555444444556789999999


Q ss_pred             HHhCCcCCCC-CCCcHHHHHHHHHHHHHHHhhhhhh
Q 019380          266 TYLGYDIQSG-VHDPYEDCVSVMRLYKRFRRQDHQV  300 (342)
Q Consensus       266 ~~~~~~~~~~-~H~A~~Da~~t~~l~~~~~~~~~~~  300 (342)
                      .| |+++.+. +|+|+.||++|++||.++.+++.++
T Consensus       164 ~~-gi~~~~~~aH~Al~Da~~ta~i~~~l~~~~~~~  198 (202)
T d2f96a1         164 AA-GMEFDNREAHSARYDTEKTAELFCGIVNRWKEM  198 (202)
T ss_dssp             HT-TCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             Hc-CCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHc
Confidence            88 9986654 8999999999999999999998764

>d2qxfa1 c.55.3.5 (A:8-474) Exonuclease I {Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease I
species: Escherichia coli K12 (Escherichia coli K-12) [TaxId: 83333]

Probab=99.66  E-value=6.2e-17  Score=155.02  Aligned_cols=164  Identities=20%  Similarity=0.249  Sum_probs=116.0

Q ss_pred             Ccceeccccccccc--CCCcccccceEEeecCCCCeE--Eee-ecCCC--CCccccccccCCCCHhhhcCCC-ChHHHHH
Q 019380          124 PKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVI--FHT-YVQPQ--LPVTNYRYEVTGLTEEDIKNAM-PLKEVKD  195 (342)
Q Consensus       124 ~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~~--~~~-lv~p~--~~i~~~~~~i~GIt~e~l~~~~-~~~~v~~  195 (342)
                      ..||++|+||||++  .+.++++ |++ ++|.+++++  +.. +++|.  ....+.+..+||||++++.+++ +..+++.
T Consensus         2 ~~fv~~D~ETtG~~~~~d~ii~~-~ai-~~d~~~~~~~~~~~~~~~~~~~~~p~~~a~~v~gi~~~~~~~~~~~~~e~~~   79 (467)
T d2qxfa1           2 STFLFHDYETFGTHPALDRPAQF-AAI-RTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAA   79 (467)
T ss_dssp             CEEEEEEEEESSSCTTTSCEEEE-EEE-EECTTSCBCSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBCHHHHHH
T ss_pred             CeEEEEEEECCCcCCCCCcEEEE-EEE-EECCCCcEEeEEEEEeecCCCCCCCCHHHHHHhCcCHHHHHcCCCCHHHHHH
Confidence            35899999999987  4566666 555 557777664  444 34544  3334678899999999998764 7889999


Q ss_pred             HHHHHHhcCCCccccccCCCCCeEEEeeC-chhhhhhcccc-----C-C-------Ccceeecccccc------------
Q 019380          196 KILEILNNGESTGRLMLDDGKARLLVGHG-LEHDLDSLRMN-----Y-P-------DHMLRDTAKYRP------------  249 (342)
Q Consensus       196 ~~~~~l~~~~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~~~-----~-~-------~~~~~Dt~~l~~------------  249 (342)
                      .+.+++..            .+.++|||| +.||..||+..     . |       .+..+|+..+.+            
T Consensus        80 ~i~~~~~~------------~~~~~v~~n~~~FD~~fl~~~~~r~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~~~~~  147 (467)
T d2qxfa1          80 RIHSLFTV------------PKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINW  147 (467)
T ss_dssp             HHHHHHTS------------TTEEEEESSTTTTHHHHHHHHHHHTTSCSSGGGTGGGCEEEEHHHHHHHHHHHCCTTSCC
T ss_pred             HHHHHHhc------------CCCcEEEEecchhhHHHHHHHHHHhcccchhhcccccccchhhhhhhhhccccCCchhhh
Confidence            99999921            355666665 79999999821     1 1       133456655443            


Q ss_pred             -ccccCCCCccHHHHHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhhhhhhhh
Q 019380          250 -LMKTNLVSHSLKYLTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQDHQVEEI  303 (342)
Q Consensus       250 -~~~~~~~~~~L~~l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~~~~~~~  303 (342)
                       ...++...++|..||..+ |+. ...+|+|++||.+|++|++.+.++...++..
T Consensus       148 ~~~~~~~~~~kL~~la~~~-gi~-~~~aH~Al~D~~~t~~l~~~i~~~~~~~~~~  200 (467)
T d2qxfa1         148 PENDDGLPSFRLEHLTKAN-GIE-HSNAHDAMADVYATIAMAKLVKTRQPRLFDY  200 (467)
T ss_dssp             CBCTTSSBCCCHHHHHHHT-TCC-CC---CTTHHHHHHHHHHHHHHHHSHHHHHH
T ss_pred             hhccccchhhhHHHHHHHh-CCC-ccccccccCCHHHHHHHHHHhhhhhHHHHHH
Confidence             112244578999999999 888 4569999999999999999999887665444

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.6e-13  Score=88.59  Aligned_cols=49  Identities=33%  Similarity=0.520  Sum_probs=42.5

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccccCChhhhhhhc
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKLSKSFESLREHL   63 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~f~~~~~l~~H~   63 (342)
                      ||||+| .||+.|..+..|..|+++  |++++| .|.+|++.|...++|..|+
T Consensus         1 EK~y~C-~Cgk~F~~~~~l~~H~~~--Ht~ekpy~C~~C~k~F~~~~~L~~H~   50 (53)
T d2csha1           1 DKLYPC-QCGKSFTHKSQRDRHMSM--HLGLRPYGCGVCGKKFKMKHHLVGHM   50 (53)
T ss_dssp             CCCEEC-TTSCEESSHHHHHHHHHH--HSCCCSEECTTTSCEESSSHHHHHHH
T ss_pred             CcCCCC-CCCCeECCHHHhHHHhhc--cccccCCcCCCcCCEecCHHHHHHHH
Confidence            789999 599999999999999999  999988 7777777777777777764

>d2igia1 c.55.3.5 (A:1-180) Oligoribonuclease {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Oligoribonuclease
species: Escherichia coli [TaxId: 562]

Probab=99.27  E-value=1.5e-12  Score=107.31  Aligned_cols=156  Identities=17%  Similarity=0.162  Sum_probs=102.0

Q ss_pred             CCcceeccccccccc--CCCcccccceEEeecCCCCeE---EeeecCCCC-------CccccccccCCCCHhhhcCCCCh
Q 019380          123 GPKAVAMDCEMVGGG--SNGTLDLCARVCLVDEDENVI---FHTYVQPQL-------PVTNYRYEVTGLTEEDIKNAMPL  190 (342)
Q Consensus       123 ~~~~v~~D~Ettg~~--~~~~~~il~~v~vv~~~~~~~---~~~lv~p~~-------~i~~~~~~i~GIt~e~l~~~~~~  190 (342)
                      ...+|++|+||||++  .+.++|+ +++.+ +.++...   ....+.|..       .+........+.........+.+
T Consensus         4 ~~~lv~lD~ETTGLdp~~d~IIeI-aaV~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (180)
T d2igia1           4 ENNLIWIDLEMTGLDPERDRIIEI-ATLVT-DANLNILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGD   81 (180)
T ss_dssp             GGCEEEEEEEESSSCTTTCCEEEE-EEEEE-CTTCCEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHCCCCH
T ss_pred             CCCEEEEEEECCCCCCCCCeEEEE-EEEEE-ECCceEeeccceeeeeccccccccccccccccccccchhhhhccccccH
Confidence            457899999999986  5567777 55544 4554443   233333332       12223335567677777788888


Q ss_pred             HHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccccC------CCcceeeccccccccccCCCCccHHHHH
Q 019380          191 KEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNY------PDHMLRDTAKYRPLMKTNLVSHSLKYLT  264 (342)
Q Consensus       191 ~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~------~~~~~~Dt~~l~~~~~~~~~~~~L~~l~  264 (342)
                      ..+...+..+...-.        ..+..++++||+.||+.+|....      .....+|+..+.+.....       .+.
T Consensus        82 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~FD~~~l~~~~~~~~~~~~~~~~D~~~~~~~~~~~-------~~~  146 (180)
T d2igia1          82 REAELATLEFLKQWV--------PAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRW-------KPE  146 (180)
T ss_dssp             HHHHHHHHHHHTTTS--------CTTTSCEEESSHHHHHHHHHHHCHHHHHHSCSCEEETHHHHHHHHHH-------CGG
T ss_pred             HHHHHHHHHHHhhhc--------cCCCcEEEechhcchhHHHHHHhhhhcccCCCcEEeehhhHHHHhhc-------ChH
Confidence            888888888873211        23567899999999999999321      124567877655444221       111


Q ss_pred             HHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhh
Q 019380          265 RTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       265 ~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                      ..+ |++ ..++|+|++||++|..+++.+++..
T Consensus       147 ~~~-~~~-~~~aH~Al~Dv~~ti~~l~~yr~~~  177 (180)
T d2igia1         147 ILD-GFT-KQGTHQAMDDIRESVAELAYYREHF  177 (180)
T ss_dssp             GGG-GSC-CCCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             Hhc-CCC-CCCCcccHHHHHHHHHHHHHHHHHh
Confidence            223 666 4569999999999999999887764

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=1.7e-10  Score=69.48  Aligned_cols=37  Identities=41%  Similarity=0.756  Sum_probs=33.3

Q ss_pred             CCCCcccccccccccCCHHHHHHHHh-hhccCCCCC-cccc
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMK-ISYHSVHQP-KCAV   48 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~-~~~H~~~~~-~C~~   48 (342)
                      |-+|||+|..||+.|.++++|.+|++ +  |++++| +|.+
T Consensus         1 s~~Kpy~C~~Cgk~F~~~~~L~~H~r~~--Ht~ekpy~C~i   39 (39)
T d2epsa1           1 SVGKPYICQSCGKGFSRPDHLNGHIKQV--HTSERPHKCQV   39 (39)
T ss_dssp             CSSCCEECSSSCCEESSHHHHHHHHHHT--SCCCCCCCSSS
T ss_pred             CCCCCccCCCCCCCcCChHHhhccCcCc--cCCCcCcCCcC
Confidence            46899999999999999999999985 7  999998 8863

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=2.2e-10  Score=67.19  Aligned_cols=32  Identities=22%  Similarity=0.477  Sum_probs=29.9

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      +++||||+|+.|++.|.++++|.+|+++  |++.
T Consensus         2 ~TGekPy~C~~C~k~F~~~~~L~~H~r~--Ht~~   33 (35)
T d1srka_           2 SSGKRPFVCRICLSAFTTKANCARHLKV--HTDT   33 (35)
T ss_dssp             CSCCSCEECSSSCCEESSHHHHHHHHGG--GTSC
T ss_pred             CCCCccccCCCCCCcccChHHHHHHccc--cCCc
Confidence            4799999999999999999999999999  8864

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=2.6e-10  Score=65.92  Aligned_cols=32  Identities=28%  Similarity=0.583  Sum_probs=30.0

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      .+++|||+|..|+++|.+++.|..|+++  |+++
T Consensus         2 HTgekpy~C~~Cgk~F~~~~~L~~H~r~--HtgE   33 (33)
T d1x6ea1           2 HSGEKPYGCVECGKAFSRSSILVQHQRV--HTGE   33 (33)
T ss_dssp             TTTCCCEECSSSCCEESSHHHHHHHHHG--GGCS
T ss_pred             cCCCCCeeCCCCCCEeCchHHhHhhccc--cCCC
Confidence            4799999999999999999999999999  9874

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.92  E-value=1.6e-10  Score=64.12  Aligned_cols=28  Identities=32%  Similarity=0.764  Sum_probs=26.7

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCC
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~   41 (342)
                      ||||+|++|+|.|+++++|.+|+++  |+|
T Consensus         1 EKPy~C~~C~k~F~~~~~L~~H~r~--HTG   28 (28)
T d1a1ia2           1 QKPFQCRICMRNFSRSDHLTTHIRT--HTG   28 (28)
T ss_dssp             CCCEECTTTCCEESCHHHHHHHHHH--HHC
T ss_pred             CcCccCCCCcCEecccccccccCCC--ccC
Confidence            7999999999999999999999999  875

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.87  E-value=5.6e-10  Score=62.60  Aligned_cols=29  Identities=28%  Similarity=0.654  Sum_probs=27.6

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCCC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~   43 (342)
                      |||+|++|++.|+++++|.+|+++  |++++
T Consensus         1 kp~~C~~C~k~F~~~~~L~~H~r~--HTgEK   29 (29)
T d2adra1           1 RSFVCEVCTRAFARQEHLKRHYRS--HTNEK   29 (29)
T ss_dssp             CCBCCTTTCCCBSCHHHHHHHHHT--TTSSC
T ss_pred             CcCCCCCCCCCCCCchHcccccCc--ccCCC
Confidence            799999999999999999999999  99874

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=9.1e-10  Score=66.16  Aligned_cols=33  Identities=30%  Similarity=0.543  Sum_probs=30.6

Q ss_pred             CCCCCCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380            8 PKRSTARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus         8 ~~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      ..+++|||+|++|||+|..+++|..|+++  |+++
T Consensus         6 ~Ht~ekpy~C~~CgK~F~~~s~L~~H~r~--HtGE   38 (38)
T d2cota2           6 QQRERRRYKCDECGKSFSHSSDLSKHRRT--HTGE   38 (38)
T ss_dssp             CCCCSCSSBCSSSCCBCSCHHHHHHHHTT--TCCS
T ss_pred             ccCCCCCEecCCCCceeeCHHHHHHhCcc--CCCC
Confidence            45799999999999999999999999999  9875

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.2e-09  Score=64.73  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=30.2

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~   43 (342)
                      .++||||+|.+|+++|..++.|..|+++  |.++.
T Consensus         3 HTgekPy~C~~C~k~F~~~~~L~~H~r~--H~~~~   35 (36)
T d1x6ha2           3 HTGEKPYACSHCDKTFRQKQLLDMHFKR--YHDPN   35 (36)
T ss_dssp             CCCCCCEECSSSSCEESSHHHHHHHHHH--TTCSS
T ss_pred             CCCCCCEECCCCCCCcCCHhHHHHhCcc--cCCCC
Confidence            5799999999999999999999999999  77654

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=6.7e-10  Score=72.47  Aligned_cols=48  Identities=23%  Similarity=0.432  Sum_probs=38.7

Q ss_pred             CC-ccccCccccCChhhhhhhc---CCCcccCCCCCcccCCcccccccccCChhhHHHHHhhc
Q 019380           43 QP-KCAVCQKLSKSFESLREHL---TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEAC  101 (342)
Q Consensus        43 ~~-~C~~C~~~f~~~~~l~~H~---~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h  101 (342)
                      +| +| .||+.|.....|..|+   ++..++          .|++||++|.+.++|..|+++|
T Consensus         2 K~y~C-~Cgk~F~~~~~l~~H~~~Ht~ekpy----------~C~~C~k~F~~~~~L~~H~r~H   53 (53)
T d2csha1           2 KLYPC-QCGKSFTHKSQRDRHMSMHLGLRPY----------GCGVCGKKFKMKHHLVGHMKIH   53 (53)
T ss_dssp             CCEEC-TTSCEESSHHHHHHHHHHHSCCCSE----------ECTTTSCEESSSHHHHHHHTTT
T ss_pred             cCCCC-CCCCeECCHHHhHHHhhccccccCC----------cCCCcCCEecCHHHHHHHHhcC
Confidence            44 89 4999999999999998   443333          4688999999999999999876

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=9.9e-10  Score=61.46  Aligned_cols=29  Identities=38%  Similarity=0.762  Sum_probs=27.4

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCCC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~   43 (342)
                      |||+|+.|++.|.++++|.+|+++  |++++
T Consensus         1 Kpy~C~~C~k~F~~~s~L~~H~r~--HtgeK   29 (29)
T d1sp1a_           1 KKFACPECPKRFMRSDHLSKHIKT--HQNKK   29 (29)
T ss_dssp             CCSCCTTTTCCCSCSHHHHHHHHG--GGCCC
T ss_pred             CCEECCcCCCeecchHHhhhhcCc--cCCcC
Confidence            699999999999999999999999  99874

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=1.4e-09  Score=58.69  Aligned_cols=26  Identities=38%  Similarity=0.770  Sum_probs=24.7

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHS   40 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~   40 (342)
                      |||+|.+|||+|..++.|.+|+++  ||
T Consensus         1 KPy~C~eCgK~F~~~s~L~~Hqri--HT   26 (26)
T d1x6ea2           1 KPYKCLECGKAFSQNSGLINHQRI--HT   26 (26)
T ss_dssp             CCEECSSSCCEESSHHHHHHHHHH--HH
T ss_pred             CCccCCCCcCeeccCcccccCccC--CC
Confidence            799999999999999999999999  74

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.6e-09  Score=62.05  Aligned_cols=32  Identities=16%  Similarity=0.374  Sum_probs=28.3

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~   41 (342)
                      .++||||+|+.|++.|.++++|..|++.+ |++
T Consensus         3 HTgekP~~C~~C~k~F~~~~~L~~H~~~~-H~~   34 (36)
T d2ct1a2           3 HSGEKPYECYICHARFTQSGTMKMHILQK-HTE   34 (36)
T ss_dssp             CSCCCSEECTTTCCEESCHHHHHHHHHHH-SSS
T ss_pred             cCCCCCEeCCCCcccccchHHHHHHcccc-cCC
Confidence            57999999999999999999999998653 654

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=5.4e-09  Score=62.25  Aligned_cols=31  Identities=32%  Similarity=0.595  Sum_probs=28.7

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCC
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~   41 (342)
                      .++||||+|+.|+++|+++++|.+|+++  |..
T Consensus         6 HTgeKPy~C~~C~k~F~~~~~L~~H~r~--H~~   36 (37)
T d1p7aa_           6 STGIKPFQCPDCDRSFSRSDHLALHRKR--HML   36 (37)
T ss_dssp             TCCSSSBCCTTTCCCBSSHHHHHHHHGG--GTC
T ss_pred             cCCccCeEeCCCCCEecCHHHHHHHHhc--CcC
Confidence            5799999999999999999999999999  753

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.8e-08  Score=60.31  Aligned_cols=32  Identities=22%  Similarity=0.385  Sum_probs=28.8

Q ss_pred             cccccccccCChhhHHHHHh-hcCCCCCCCCcc
Q 019380           80 GCNLCMNIFDSPSSLIKHKE-ACSLSAPVPFKI  111 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~-~h~~~~~~~~~~  111 (342)
                      .|.+||++|.++++|.+|++ +|.+++||.|++
T Consensus         7 ~C~~Cgk~F~~~~~L~~H~r~~Ht~ekpy~C~i   39 (39)
T d2epsa1           7 ICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV   39 (39)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHTSCCCCCCCSSS
T ss_pred             cCCCCCCCcCChHHhhccCcCccCCCcCcCCcC
Confidence            46899999999999999986 799999999974

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.8e-08  Score=55.76  Aligned_cols=28  Identities=32%  Similarity=0.691  Sum_probs=26.3

Q ss_pred             Ccccccc--cccccCCHHHHHHHHhhhccCCC
Q 019380           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        13 ~~~~C~~--C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      |||.|+.  |++.|+++++|++|+++  |+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~--HtGE   30 (30)
T d2glia3           1 KPHKCTFEGCRKSYSRLENLKTHLRS--HTGE   30 (30)
T ss_dssp             CCCCCCSTTCCCCCSSHHHHHHHHHH--TTTC
T ss_pred             CCeeCCCCCCCceECChhHhhhhcCc--CcCC
Confidence            7999988  99999999999999999  9875

>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of prokaryotic DNA polymerase
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=4e-07  Score=75.01  Aligned_cols=146  Identities=14%  Similarity=0.097  Sum_probs=98.8

Q ss_pred             CcceecccccccccCCCcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhc
Q 019380          124 PKAVAMDCEMVGGGSNGTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNN  203 (342)
Q Consensus       124 ~~~v~~D~Ettg~~~~~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~~  203 (342)
                      .+.+++|+||+|.++-... + ..+.+....+...+..+......               .....+..++++.+..++  
T Consensus        26 ~~~~a~DtEt~~l~~~~~~-i-~~i~i~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~l~~l~~~l--   86 (195)
T d1kfsa1          26 APVFAFDTETDSLDNISAN-L-VGLSFAIEPGVAAYIPVAHDYLD---------------APDQISRERALELLKPLL--   86 (195)
T ss_dssp             SSSEEEEEEESCSCTTTCC-E-EEEEEEEETTEEEEEECCCCSTT---------------CCCCCCHHHHHHHHHHHH--
T ss_pred             CCeEEEEeeeCCCCccccc-c-ccceeeccCCccccccccccccc---------------ccccccHHHHHHHHHHHH--
Confidence            3479999999998633322 2 34444333333333322221111               111235677888899988  


Q ss_pred             CCCccccccCCCCCeEEEeeCchhhhhhcccc--CCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCC------
Q 019380          204 GESTGRLMLDDGKARLLVGHGLEHDLDSLRMN--YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG------  275 (342)
Q Consensus       204 ~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~--~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~------  275 (342)
                                .+...+.|+||+.+|+.+|...  .....+.||+.......+...++++..++..+++..+...      
T Consensus        87 ----------e~~~i~ki~hn~~~d~~~l~~~~~~~~~~~~Dt~~a~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~  156 (195)
T d1kfsa1          87 ----------EDEKALKVGQNLKYDRGILANYGIELRGIAFDTMLESYILNSVAGRHDMDSLAERWLKHKTITFEEIAGK  156 (195)
T ss_dssp             ----------TCTTSCEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCTTSSCCSHHHHHHHHSSCCCCCHHHHHCS
T ss_pred             ----------hcccceeeechHHHHHHHHHHHhccccCccHHHHHHHHHhcccccccchHHHHHHHhhcccchHhhhccc
Confidence                      3355678999999999999932  2235678888888777777788999999999988875422      


Q ss_pred             ---C------------CCcHHHHHHHHHHHHHHHhhhh
Q 019380          276 ---V------------HDPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       276 ---~------------H~A~~Da~~t~~l~~~~~~~~~  298 (342)
                         .            .=|..||..|.+||.++..+.+
T Consensus       157 ~~~~~~~~~i~~~~~~~YAa~D~~~t~~L~~~l~~~L~  194 (195)
T d1kfsa1         157 GKNQLTFNQIALEEAGRYAAEDADVTLQLHLKMWPDLQ  194 (195)
T ss_dssp             GGGCCCGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ccCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence               1            2378899999999999988753

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=3e-08  Score=55.74  Aligned_cols=28  Identities=29%  Similarity=0.524  Sum_probs=25.9

Q ss_pred             Ccccccc--cccccCCHHHHHHHHhhhccCCC
Q 019380           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        13 ~~~~C~~--C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      |||+|+.  |++.|.++++|.+|+++  |+++
T Consensus         1 kp~~C~~~gCgk~F~~~~~L~~H~r~--HTGE   30 (30)
T d1ubdc3           1 KPFQCTFEGCGKRFSLDFNLRTHVRI--HTGD   30 (30)
T ss_dssp             CCEECCSTTCCCEESCHHHHHHHHHH--HHCC
T ss_pred             CCccCCCCCCCceECcHHHcCccccc--cCCC
Confidence            7999976  99999999999999999  8874

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=5.7e-08  Score=55.04  Aligned_cols=29  Identities=31%  Similarity=0.584  Sum_probs=26.6

Q ss_pred             Cccccc--ccccccCCHHHHHHHHhhhccCCCC
Q 019380           13 ARHKCV--ACYKQFKRKDHLIEHMKISYHSVHQ   43 (342)
Q Consensus        13 ~~~~C~--~C~k~f~~~~~L~~H~~~~~H~~~~   43 (342)
                      |||.|+  .|+|.|.++++|.+|+++  |++++
T Consensus         1 kpf~C~~~~C~k~F~~~~~L~~H~r~--HtgeK   31 (31)
T d1sp2a_           1 RPFMCTWSYCGKRFTRSDELQRHKRT--HTGEK   31 (31)
T ss_dssp             CCCBCCSTTCCCBCSSHHHHHHHHTT--TSCCC
T ss_pred             CcCCCcCCCCCcCcCChhHhhhhcCc--ccccC
Confidence            699995  699999999999999999  99874

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=98.38  E-value=7.2e-08  Score=53.75  Aligned_cols=26  Identities=19%  Similarity=0.445  Sum_probs=24.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|++|+++|+++++|.+|+++|+|++
T Consensus         4 ~C~~C~k~F~~~~~L~~H~r~HTgEK   29 (29)
T d2adra1           4 VCEVCTRAFARQEHLKRHYRSHTNEK   29 (29)
T ss_dssp             CCTTTCCCBSCHHHHHHHHHTTTSSC
T ss_pred             CCCCCCCCCCCchHcccccCcccCCC
Confidence            47899999999999999999999985

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=8e-08  Score=56.43  Aligned_cols=29  Identities=17%  Similarity=0.141  Sum_probs=27.4

Q ss_pred             cccccccCChhhHHHHHhhcCCCCCCCCc
Q 019380           82 NLCMNIFDSPSSLIKHKEACSLSAPVPFK  110 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~~~h~~~~~~~~~  110 (342)
                      +.||++|.++++|++|+++|.|++|+.|+
T Consensus         7 ~~C~k~F~~~~~L~~H~r~Htgekpy~C~   35 (36)
T d2dlka2           7 PACGKSFNFKKHLKEHMKLHSDTRDYICE   35 (36)
T ss_dssp             TTTCCEESSHHHHHHHHHHHHTSCCCSCC
T ss_pred             CCCCCeeCChhHhccccCeeCCCCCEeCC
Confidence            45999999999999999999999999986

>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Ribonuclease D, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=4.7e-07  Score=75.02  Aligned_cols=83  Identities=12%  Similarity=0.086  Sum_probs=64.7

Q ss_pred             CCeEEEeeCchhhhhhcccc--CCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCC---------------CCC
Q 019380          216 KARLLVGHGLEHDLDSLRMN--YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG---------------VHD  278 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~~~--~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~---------------~H~  278 (342)
                      ...+-||||+.+|+.+|...  .....++||+.....+. .....+|+.|+..++|+.+++.               -+-
T Consensus        73 ~~i~Kv~hn~~~D~~~L~~~~g~~~~~~~Dt~~~~~~l~-~~~~~~L~~l~~~~lg~~ldK~~q~sdW~~rPL~~~qi~Y  151 (193)
T d1yt3a3          73 PSITKFLHAGSEDLEVFLNVFGELPQPLIDTQILAAFCG-RPMSWGFASMVEEYSGVTLDKSESRTDWLARPLTERQCEY  151 (193)
T ss_dssp             TTSEEEESSCHHHHHHHHHHHSSCCSSEEEHHHHHHHTT-CCTTCCHHHHHHHHHCCCCCCTTTTSCTTSSSCCHHHHHH
T ss_pred             CCceEEEecchhhhhhhhhhcCccccccchhhHHHhhhc-cccccchhhHHhhhccccccchhhccccccccccHHHHHH
Confidence            66788999999999998722  23356899988776554 3357899999999999997644               145


Q ss_pred             cHHHHHHHHHHHHHHHhhhhh
Q 019380          279 PYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       279 A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      |..||..+..||.++..+...
T Consensus       152 AA~Dv~~ll~L~~~L~~~l~~  172 (193)
T d1yt3a3         152 AAADVWYLLPITAKLMVETEA  172 (193)
T ss_dssp             HHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHh
Confidence            677999999999999887654

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.1e-07  Score=52.89  Aligned_cols=26  Identities=23%  Similarity=0.347  Sum_probs=24.0

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|++||++|.++++|.+|+++|.|++
T Consensus         4 ~C~~C~k~F~~~s~L~~H~r~HtgeK   29 (29)
T d1sp1a_           4 ACPECPKRFMRSDHLSKHIKTHQNKK   29 (29)
T ss_dssp             CCTTTTCCCSCSHHHHHHHHGGGCCC
T ss_pred             ECCcCCCeecchHHhhhhcCccCCcC
Confidence            47899999999999999999999985

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.32  E-value=1.2e-07  Score=53.98  Aligned_cols=29  Identities=34%  Similarity=0.539  Sum_probs=26.5

Q ss_pred             CCcccccc--cccccCCHHHHHHHHhhhccCCC
Q 019380           12 TARHKCVA--CYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        12 ~~~~~C~~--C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      ||||.|+.  |+|.|+++++|.+|+++  |+.+
T Consensus         1 ErP~~C~~pgC~k~F~r~~~L~~H~r~--Ht~k   31 (32)
T d1zfda_           1 DRPYSCDHPGCDKAFVRNHDLIRHKKS--HQEK   31 (32)
T ss_dssp             CCSBCCCCTTCCCCBSSSHHHHHHHGG--GTCC
T ss_pred             CcCeECcCCCCCCeeCCHHHHHHHhhh--ccCC
Confidence            79999977  99999999999999999  8753

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.1e-07  Score=52.63  Aligned_cols=25  Identities=20%  Similarity=0.332  Sum_probs=23.0

Q ss_pred             ccccccccCChhhHHHHHhhcCCCC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .+.|+++|++.++|.+|+++|+|++
T Consensus         7 ~~~C~k~F~~~~~L~~H~r~HtgeK   31 (31)
T d1sp2a_           7 WSYCGKRFTRSDELQRHKRTHTGEK   31 (31)
T ss_dssp             STTCCCBCSSHHHHHHHHTTTSCCC
T ss_pred             CCCCCcCcCChhHhhhhcCcccccC
Confidence            4779999999999999999999985

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.29  E-value=4.4e-08  Score=61.36  Aligned_cols=33  Identities=24%  Similarity=0.547  Sum_probs=30.2

Q ss_pred             CCCCCcccccc--cccccCCHHHHHHHHhhhccCCCC
Q 019380            9 KRSTARHKCVA--CYKQFKRKDHLIEHMKISYHSVHQ   43 (342)
Q Consensus         9 ~~~~~~~~C~~--C~k~f~~~~~L~~H~~~~~H~~~~   43 (342)
                      .+++|||+|+.  |++.|+.+++|..|+++  |++++
T Consensus        13 h~gekpy~C~~~~C~k~F~~~~~L~~H~r~--Htgek   47 (47)
T d1ncsa_          13 EMPDKTFECLFPGCTKTFKRRYNIRSHIQT--HLEDR   47 (47)
T ss_dssp             EETTTEEECCCTTCCCEECSSSSHHHHHHH--HTTTC
T ss_pred             ccCCCCeECCcCCCCccccCchHHHhhccc--ccCCC
Confidence            57999999976  99999999999999999  99874

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=2.8e-07  Score=54.94  Aligned_cols=25  Identities=28%  Similarity=0.511  Sum_probs=21.2

Q ss_pred             cccccccccCChhhHHHHHhhcCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      .|++|||+|.++++|.+|+++|+||
T Consensus        14 ~C~~CgK~F~~~s~L~~H~r~HtGE   38 (38)
T d2cota2          14 KCDECGKSFSHSSDLSKHRRTHTGE   38 (38)
T ss_dssp             BCSSSCCBCSCHHHHHHHHTTTCCS
T ss_pred             ecCCCCceeeCHHHHHHhCccCCCC
Confidence            3578888899999999999999876

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=1.5e-07  Score=52.26  Aligned_cols=27  Identities=30%  Similarity=0.664  Sum_probs=24.9

Q ss_pred             Ccccccc--cccccCCHHHHHHHHhhhccCC
Q 019380           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHSV   41 (342)
Q Consensus        13 ~~~~C~~--C~k~f~~~~~L~~H~~~~~H~~   41 (342)
                      |||+|+.  |+|.|.++++|.+|+++  |++
T Consensus         1 Kp~~C~~~gC~k~F~~~~~L~~H~r~--HtG   29 (29)
T d1a1ia1           1 RPYACPVESCDRRFSRSADLTRHIRI--HTG   29 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHTHH--HHT
T ss_pred             CCeECCCCCCCcEECchhHhhhhcCc--cCC
Confidence            7999976  99999999999999999  875

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=1.9e-07  Score=51.42  Aligned_cols=24  Identities=25%  Similarity=0.544  Sum_probs=21.8

Q ss_pred             cccccccccCChhhHHHHHhhcCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~  103 (342)
                      .|++|+++|.++++|.+|+++|+|
T Consensus         5 ~C~~C~k~F~~~~~L~~H~r~HTG   28 (28)
T d1a1ia2           5 QCRICMRNFSRSDHLTTHIRTHTG   28 (28)
T ss_dssp             ECTTTCCEESCHHHHHHHHHHHHC
T ss_pred             cCCCCcCEecccccccccCCCccC
Confidence            368899999999999999999986

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=4.3e-07  Score=46.38  Aligned_cols=26  Identities=50%  Similarity=0.827  Sum_probs=24.3

Q ss_pred             cccccccccccCCHHHHHHHHhhhccCC
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHSV   41 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~~   41 (342)
                      |++|+.|+|.|+++..|..||+.  |++
T Consensus         1 phkc~~c~kcfsrkdklk~hmr~--htg   26 (26)
T d2dmda2           1 PHKCEVCGKCFSRKDKLKTHMRC--HTG   26 (26)
T ss_dssp             CCCBTTTTBCCCCHHHHHHHGGG--CCC
T ss_pred             CCccchhhhHhcchhHHHHHhhc--cCC
Confidence            68999999999999999999999  875

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=2.6e-07  Score=54.15  Aligned_cols=31  Identities=45%  Similarity=0.773  Sum_probs=28.4

Q ss_pred             ccccc--cccccCCHHHHHHHHhhhccCCCCC-ccc
Q 019380           15 HKCVA--CYKQFKRKDHLIEHMKISYHSVHQP-KCA   47 (342)
Q Consensus        15 ~~C~~--C~k~f~~~~~L~~H~~~~~H~~~~~-~C~   47 (342)
                      |.|+.  |++.|.++.+|.+|+++  |++++| .|.
T Consensus         2 f~C~~~~C~k~F~~~~~L~~H~r~--Htgekpy~C~   35 (36)
T d2dlka2           2 FSCPEPACGKSFNFKKHLKEHMKL--HSDTRDYICE   35 (36)
T ss_dssp             EECSCTTTCCEESSHHHHHHHHHH--HHTSCCCSCC
T ss_pred             eECCCCCCCCeeCChhHhccccCe--eCCCCCEeCC
Confidence            77865  99999999999999999  999998 885

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.2e-07  Score=52.58  Aligned_cols=25  Identities=28%  Similarity=0.558  Sum_probs=21.9

Q ss_pred             cccccccccCChhhHHHHHhhcCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      .|.+||++|.++++|..|+++|+||
T Consensus         9 ~C~~Cgk~F~~~~~L~~H~r~HtgE   33 (33)
T d1x6ea1           9 GCVECGKAFSRSSILVQHQRVHTGE   33 (33)
T ss_dssp             ECSSSCCEESSHHHHHHHHHGGGCS
T ss_pred             eCCCCCCEeCchHHhHhhccccCCC
Confidence            3588899999999999999999886

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=6.1e-07  Score=50.15  Aligned_cols=23  Identities=13%  Similarity=0.189  Sum_probs=21.0

Q ss_pred             cccccccCChhhHHHHHhhcCCC
Q 019380           82 NLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      +-|+++|+++++|++|+++|+|+
T Consensus         8 ~gCgk~F~~~~~L~~H~r~HtGE   30 (30)
T d2glia3           8 EGCRKSYSRLENLKTHLRSHTGE   30 (30)
T ss_dssp             TTCCCCCSSHHHHHHHHHHTTTC
T ss_pred             CCCCceECChhHhhhhcCcCcCC
Confidence            34999999999999999999986

>d2d5ra1 c.55.3.9 (A:11-262) CCR4-NOT transcription complex subunit 7, CAF1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: CAF1-like ribonuclease
domain: CCR4-NOT transcription complex subunit 7, CAF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=7.2e-06  Score=70.25  Aligned_cols=78  Identities=13%  Similarity=0.122  Sum_probs=63.5

Q ss_pred             CCCeEEEeeCchhhhhhcc--c---c---------------CCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCC
Q 019380          215 GKARLLVGHGLEHDLDSLR--M---N---------------YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQS  274 (342)
Q Consensus       215 ~~~~~lvgh~~~~D~~~l~--~---~---------------~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~  274 (342)
                      .++.++|+||..+|+.+|-  +   .               +|  .++||..+.+...+  .+-+|++||+.+ |++-.+
T Consensus       138 ~~~~~wv~f~g~yD~~yl~k~l~~~~LP~~~~eF~~~v~~~FP--~vyDtK~l~~~~~~--~~~~L~~la~~L-~v~~~g  212 (252)
T d2d5ra1         138 CEGVKWLSFHSGYDFGYLIKILTNSNLPEEELDFFEILRLFFP--VIYDVKYLMKSCKN--LKGGLQEVAEQL-ELERIG  212 (252)
T ss_dssp             SSSCEEEESSCHHHHHHHHHHHHTSCCCSSHHHHHHHHHHHCS--CEEEHHHHGGGCTT--CCSSHHHHHHHH-TCCCCS
T ss_pred             cCCCcEEEecchhHHHHHHHHHcCCCCCCCHHHHHHHHHHHCc--hHhhHHHHHhhccC--CCchHHHHHHHc-CCCCCC
Confidence            3788999999999998876  0   1               34  38899888776643  456899999998 988544


Q ss_pred             CCCCcHHHHHHHHHHHHHHHhhh
Q 019380          275 GVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       275 ~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                      ..|.|-.||..|+.+|.++.+..
T Consensus       213 ~~H~AG~DsllT~~~F~~l~~~~  235 (252)
T d2d5ra1         213 PQHQAGSDSLLTGMAFFKMREMF  235 (252)
T ss_dssp             STTSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcchhHHHHHHHHHHHHHHHHH
Confidence            48999999999999999998875

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=4e-07  Score=50.98  Aligned_cols=23  Identities=17%  Similarity=0.112  Sum_probs=21.1

Q ss_pred             cccccccCChhhHHHHHhhcCCC
Q 019380           82 NLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      +.|+++|+++++|.+|+++|+||
T Consensus         8 ~gCgk~F~~~~~L~~H~r~HTGE   30 (30)
T d1ubdc3           8 EGCGKRFSLDFNLRTHVRIHTGD   30 (30)
T ss_dssp             TTCCCEESCHHHHHHHHHHHHCC
T ss_pred             CCCCceECcHHHcCccccccCCC
Confidence            45999999999999999999986

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=2e-07  Score=51.10  Aligned_cols=26  Identities=27%  Similarity=0.529  Sum_probs=24.1

Q ss_pred             Ccccccc--cccccCCHHHHHHHHhhhccC
Q 019380           13 ARHKCVA--CYKQFKRKDHLIEHMKISYHS   40 (342)
Q Consensus        13 ~~~~C~~--C~k~f~~~~~L~~H~~~~~H~   40 (342)
                      |||.|+.  |+|.|++.++|.+|+++  |+
T Consensus         1 rPf~C~~~gC~K~F~~~~~L~~H~r~--HT   28 (28)
T d1ubdc4           1 RPYVCPFDGCNKKFAQSTNLKSHILT--HA   28 (28)
T ss_dssp             CCCCCCSTTCCCCCSSTTTTHHHHHH--HC
T ss_pred             CCcCCCCCCcCCcCCCHHHHHHHHhh--cc
Confidence            7999976  99999999999999999  75

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.7e-07  Score=48.55  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=20.6

Q ss_pred             cccccccccCChhhHHHHHhhcC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      .|.+|||+|.++++|.+|+++|+
T Consensus         4 ~C~eCgK~F~~~s~L~~HqriHT   26 (26)
T d1x6ea2           4 KCLECGKAFSQNSGLINHQRIHT   26 (26)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHH
T ss_pred             cCCCCcCeeccCcccccCccCCC
Confidence            36899999999999999999984

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.01  E-value=1.5e-06  Score=45.84  Aligned_cols=25  Identities=32%  Similarity=0.571  Sum_probs=24.2

Q ss_pred             CCcccccccccccCCHHHHHHHHhh
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      ||||.|+.||+.|..+...++|.++
T Consensus         1 EkPf~C~~CgrkFArsderkRH~ki   25 (28)
T d1a1ia3           1 EKPFACDICGRKFARSDERKRHTKI   25 (28)
T ss_dssp             CCCEECTTTCCEESSHHHHHHHHGG
T ss_pred             CCCcccchhhhhhhcchhhhhhhhh
Confidence            6899999999999999999999999

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.6e-06  Score=50.79  Aligned_cols=25  Identities=20%  Similarity=0.293  Sum_probs=20.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      .|.+||++|.++++|..|+++|+++
T Consensus        10 ~C~~C~k~F~~~~~L~~H~r~H~~~   34 (36)
T d1x6ha2          10 ACSHCDKTFRQKQLLDMHFKRYHDP   34 (36)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHTTCS
T ss_pred             ECCCCCCCcCCHhHHHHhCcccCCC
Confidence            3578888888999999999998865

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.99  E-value=1.2e-06  Score=54.54  Aligned_cols=32  Identities=9%  Similarity=0.052  Sum_probs=26.4

Q ss_pred             CCCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCCCC
Q 019380           64 TGPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        64 ~~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .++|.|          ..+.|+++|.++++|+.|+++|.|++
T Consensus        16 ekpy~C----------~~~~C~k~F~~~~~L~~H~r~Htgek   47 (47)
T d1ncsa_          16 DKTFEC----------LFPGCTKTFKRRYNIRSHIQTHLEDR   47 (47)
T ss_dssp             TTEEEC----------CCTTCCCEECSSSSHHHHHHHHTTTC
T ss_pred             CCCeEC----------CcCCCCccccCchHHHhhcccccCCC
Confidence            567766          23559999999999999999999985

>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exosome complex exonuclease RRP6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.93  E-value=9.4e-06  Score=70.96  Aligned_cols=83  Identities=20%  Similarity=0.207  Sum_probs=65.3

Q ss_pred             CCCeEEEeeCchhhhhhcccc--CCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCC------C---------C
Q 019380          215 GKARLLVGHGLEHDLDSLRMN--YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG------V---------H  277 (342)
Q Consensus       215 ~~~~~lvgh~~~~D~~~l~~~--~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~------~---------H  277 (342)
                      +.+-+-||||+.+|+.+|...  .....++||+..+..+.  ..+.||..|++.|+|+.+...      .         +
T Consensus       155 d~~I~KV~H~~~~Di~~L~~~~g~~~~n~fDT~~aa~~l~--~~~~sL~~L~~~yl~~~ldK~~q~SdW~~RPLs~~qi~  232 (292)
T d2hbka2         155 NPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIG--LPRHSLAYLLENFANFKTSKKYQLADWRIRPLSKPMTA  232 (292)
T ss_dssp             CTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHT--CSCCSHHHHHHHHHCCCCCCTTTTSCTTCSSCCHHHHH
T ss_pred             ccCeEEEeechHhhhhhhhhcccccccchHHHHHHHHHhC--ccccchHHHHHHhhhhcccccccccccccCcCCHHHHH
Confidence            356688999999999999733  33356899998877663  357899999999999997654      1         3


Q ss_pred             CcHHHHHHHHHHHHHHHhhhhh
Q 019380          278 DPYEDCVSVMRLYKRFRRQDHQ  299 (342)
Q Consensus       278 ~A~~Da~~t~~l~~~~~~~~~~  299 (342)
                      -|..||..+..||..+.++..+
T Consensus       233 YAa~Da~~Ll~ly~~L~~~L~~  254 (292)
T d2hbka2         233 AARADTHFLLNIYDQLRNKLIE  254 (292)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            4577999999999999888655

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=2.4e-06  Score=49.47  Aligned_cols=25  Identities=16%  Similarity=0.519  Sum_probs=20.8

Q ss_pred             cccccccccCChhhHHHHHhhcCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      .|++|++.|+++++|.+|+++|...
T Consensus         9 ~C~~C~k~F~~~~~L~~H~r~Ht~~   33 (35)
T d1srka_           9 VCRICLSAFTTKANCARHLKVHTDT   33 (35)
T ss_dssp             ECSSSCCEESSHHHHHHHHGGGTSC
T ss_pred             cCCCCCCcccChHHHHHHccccCCc
Confidence            3678888899999999999998754

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=9.1e-07  Score=52.28  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=15.2

Q ss_pred             ccccccccCChhhHHHHHhhcC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      |++|+++|+++++|.+|+++|.
T Consensus        14 C~~C~k~F~~~~~L~~H~r~H~   35 (37)
T d1p7aa_          14 CPDCDRSFSRSDHLALHRKRHM   35 (37)
T ss_dssp             CTTTCCCBSSHHHHHHHHGGGT
T ss_pred             eCCCCCEecCHHHHHHHHhcCc
Confidence            4666677777777777777664

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=3.4e-06  Score=45.16  Aligned_cols=29  Identities=31%  Similarity=0.534  Sum_probs=26.7

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      ||||+|+.|+..|..+..+.-|++.  |.+.
T Consensus         1 ekp~~cpic~qrfkrkdrmsyhvrs--hdg~   29 (32)
T d2epqa1           1 EKPYSCPVCGLRFKRKDRMSYHVRS--HDGS   29 (32)
T ss_dssp             CCSSEETTTTEECSCHHHHHHHHHH--HSCC
T ss_pred             CCCcccchHHHHhhccccceEeeec--ccCc
Confidence            6899999999999999999999999  7654

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.4e-06  Score=42.98  Aligned_cols=24  Identities=21%  Similarity=0.437  Sum_probs=21.9

Q ss_pred             cccccccccCChhhHHHHHhhcCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~  103 (342)
                      .|+.|++.|+++..|..|++.|.|
T Consensus         3 kc~~c~kcfsrkdklk~hmr~htg   26 (26)
T d2dmda2           3 KCEVCGKCFSRKDKLKTHMRCHTG   26 (26)
T ss_dssp             CBTTTTBCCCCHHHHHHHGGGCCC
T ss_pred             ccchhhhHhcchhHHHHHhhccCC
Confidence            488999999999999999999975

>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of prokaryotic DNA polymerase
species: Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]

Probab=97.85  E-value=5e-06  Score=67.21  Aligned_cols=83  Identities=6%  Similarity=-0.043  Sum_probs=65.6

Q ss_pred             CCeEEEeeCchhhhhhccc-cCC-CcceeeccccccccccCCCCccHHHHHHHHhCCcCCCC------------------
Q 019380          216 KARLLVGHGLEHDLDSLRM-NYP-DHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG------------------  275 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~~-~~~-~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~------------------  275 (342)
                      .+...|+||+.+|+.+|.. ... ...+.||+..+..+.|....++|+.|+..|++..+...                  
T Consensus        67 ~~~~ki~hn~K~d~~~L~~~gi~~~~~~fDt~laayll~p~~~~~~L~~la~~yl~~~~~~~e~~~gkg~k~~~~~~~~~  146 (171)
T d2hhva1          67 ETKKKSMFDSKRAAVALKWKGIELCGVSFDLLLAAYLLDPAQGVDDVAAAAKMKQYEAVRPDEAVYGKGAKRAVPDEPVL  146 (171)
T ss_dssp             TTSEEEESSHHHHHHHHHTTTCCCCCEEEEHHHHHHHHCGGGCCCSHHHHHHTTTCCSSCCHHHHHCSGGGCCCCCHHHH
T ss_pred             ccceeeccchHHHHHHHHHCCCCCccccccHHHHHHHhcCCcccccHHHHHHHHcCCCCccceeccCcchhhcCCCHHHH
Confidence            6679999999999999982 121 24567999999999888889999999999998887431                  


Q ss_pred             CCCcHHHHHHHHHHHHHHHhhhh
Q 019380          276 VHDPYEDCVSVMRLYKRFRRQDH  298 (342)
Q Consensus       276 ~H~A~~Da~~t~~l~~~~~~~~~  298 (342)
                      .--|..||.++.+|+..+.++..
T Consensus       147 ~~yaa~da~~~~~L~~~l~~~L~  169 (171)
T d2hhva1         147 AEHLVRKAAAIWELERPFLDELR  169 (171)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Confidence            11256789999999999888754

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=2.7e-06  Score=47.01  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=20.0

Q ss_pred             cccccccCChhhHHHHHhhcCC
Q 019380           82 NLCMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~~~h~~  103 (342)
                      +-|+++|.+.++|.+|+++|+|
T Consensus         8 ~gC~k~F~~~~~L~~H~r~HtG   29 (29)
T d1a1ia1           8 ESCDRRFSRSADLTRHIRIHTG   29 (29)
T ss_dssp             TTCCCEESSHHHHHHHTHHHHT
T ss_pred             CCCCcEECchhHhhhhcCccCC
Confidence            4599999999999999999976

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=4.8e-06  Score=45.62  Aligned_cols=29  Identities=31%  Similarity=0.534  Sum_probs=27.2

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAPVP  108 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~~~  108 (342)
                      +|..|||.|....+|.+|.-.|.+++||.
T Consensus         7 ~ce~cgk~frdvyhlnrhklshs~ekpys   35 (35)
T d2epra1           7 ACEICGKIFRDVYHLNRHKLSHSGEKPYS   35 (35)
T ss_dssp             EETTTTEEESSHHHHHHHGGGSCSCCCCC
T ss_pred             hHHHHHHHHHHHHHHHhhhcccCCCCCCC
Confidence            69999999999999999999999999973

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.79  E-value=9.5e-06  Score=45.84  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.5

Q ss_pred             cccccccCChhhHHHHHhhcCCC
Q 019380           82 NLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      +-|+++|++.++|.+|+++|...
T Consensus         9 pgC~k~F~r~~~L~~H~r~Ht~k   31 (32)
T d1zfda_           9 PGCDKAFVRNHDLIRHKKSHQEK   31 (32)
T ss_dssp             TTCCCCBSSSHHHHHHHGGGTCC
T ss_pred             CCCCCeeCCHHHHHHHhhhccCC
Confidence            45999999999999999999854

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=2.8e-06  Score=49.69  Aligned_cols=24  Identities=17%  Similarity=0.362  Sum_probs=16.8

Q ss_pred             ccccccccCChhhHHHHHhhcCCC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      |+.|+++|+++++|++|++.++++
T Consensus        11 C~~C~k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2          11 CYICHARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             CTTTCCEESCHHHHHHHHHHHSSS
T ss_pred             CCCCcccccchHHHHHHcccccCC
Confidence            466777777777777887665544

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.73  E-value=6.2e-06  Score=45.00  Aligned_cols=21  Identities=19%  Similarity=0.303  Sum_probs=18.9

Q ss_pred             cccccccCChhhHHHHHhhcC
Q 019380           82 NLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      +-|||+|++.++|++|+++|+
T Consensus         8 ~gC~K~F~~~~~L~~H~r~HT   28 (28)
T d1ubdc4           8 DGCNKKFAQSTNLKSHILTHA   28 (28)
T ss_dssp             TTCCCCCSSTTTTHHHHHHHC
T ss_pred             CCcCCcCCCHHHHHHHHhhcc
Confidence            459999999999999999984

>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Hypothetical protein AT5G06450
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.65  E-value=9e-06  Score=67.69  Aligned_cols=90  Identities=17%  Similarity=0.138  Sum_probs=66.7

Q ss_pred             HHHHHHHhcCCCccccccCCCCCeEEEeeCchhhhhhccccCC--Ccceeecccccccccc--CCCCccHHHHHHHHhCC
Q 019380          195 DKILEILNNGESTGRLMLDDGKARLLVGHGLEHDLDSLRMNYP--DHMLRDTAKYRPLMKT--NLVSHSLKYLTRTYLGY  270 (342)
Q Consensus       195 ~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~~D~~~l~~~~~--~~~~~Dt~~l~~~~~~--~~~~~~L~~l~~~~~~~  270 (342)
                      +.+..+|            .+.+.+.||||+..|+..|.-.++  ...++|...++.....  ....++|+.|++.+||.
T Consensus        98 ~~L~~~L------------~~~~i~kVG~~i~~D~~~L~~~~gi~~~~~~Dl~~la~~~~~~~~~~~~gL~~L~~~~Lg~  165 (206)
T d1vk0a_          98 KDLYRFF------------ASKFVTFVGVQIEEDLDLLRENHGLVIRNAINVGKLAAEARGTLVLEFLGTRELAHRVLWS  165 (206)
T ss_dssp             HHHHHHH------------TCSSSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHHTCGGGGGCCHHHHHHHHHCC
T ss_pred             HHHHHHh------------cCCCceEEEEeEHHHHHHHHHhcCCcccceEEchHHHHHhhcCCccccchHHHHHHHHhcc
Confidence            4567788            347789999999999999984333  2457887766654432  33468999999999999


Q ss_pred             cCCCCC---------------CCcHHHHHHHHHHHHHHHhh
Q 019380          271 DIQSGV---------------HDPYEDCVSVMRLYKRFRRQ  296 (342)
Q Consensus       271 ~~~~~~---------------H~A~~Da~~t~~l~~~~~~~  296 (342)
                      .+....               +-|..||.++.+||.++.++
T Consensus       166 ~l~K~~~~~SnW~~pLs~~Qi~YAA~DA~~~~~i~~~L~~e  206 (206)
T d1vk0a_         166 DLGQLDSIEAKWEKAGPEEQLEAAAIEGWLIVNVWDQLSDE  206 (206)
T ss_dssp             CCHHHHHHHHTGGGSCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cCCCcceeecCCCCcCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            876431               23566999999999998763

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=1.5e-05  Score=42.57  Aligned_cols=22  Identities=32%  Similarity=0.424  Sum_probs=19.9

Q ss_pred             cccccccCChhhHHHHHhhcCC
Q 019380           82 NLCMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~~~h~~  103 (342)
                      +-|+|+|+.+++|+.|++.+||
T Consensus         8 ~gC~K~YtdPSSLRKH~k~~HG   29 (29)
T d2glia5           8 PGCTKRYTDPSSLRKHVKTVHG   29 (29)
T ss_dssp             TTTCCEESSHHHHHHHHHHSCC
T ss_pred             CCCCcccCCHHHHHHHHHhhCC
Confidence            5599999999999999998875

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.59  E-value=2.1e-05  Score=40.86  Aligned_cols=28  Identities=29%  Similarity=0.520  Sum_probs=25.0

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCCC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      |.+.|.+|||.|..++.|++|..+  |+++
T Consensus         1 r~hvc~ecgkaf~essklkrh~lv--htge   28 (28)
T d1ubdc2           1 RVHVCAECGKAFVESSKLKRHQLV--HTGE   28 (28)
T ss_dssp             CCEECTTTCCEESSHHHHHHHGGG--TSCC
T ss_pred             CcchHHHHhHHHHHHHHHHHHhhc--ccCC
Confidence            457899999999999999999999  8864

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=1.9e-05  Score=41.00  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=22.3

Q ss_pred             ccccccccCChhhHHHHHhhcCCC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      |.+|||+|..++.|++|+-+|+|+
T Consensus         5 c~ecgkaf~essklkrh~lvhtge   28 (28)
T d1ubdc2           5 CAECGKAFVESSKLKRHQLVHTGE   28 (28)
T ss_dssp             CTTTCCEESSHHHHHHHGGGTSCC
T ss_pred             HHHHhHHHHHHHHHHHHhhcccCC
Confidence            789999999999999999999875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=2.8e-05  Score=40.54  Aligned_cols=29  Identities=21%  Similarity=0.399  Sum_probs=26.6

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      ||||+|+.|...-..++.|..|.+.  |++.
T Consensus         1 erpfkcqlcsy~srnssqltvhlr~--htgd   29 (29)
T d2dmda3           1 ERPFKCQICPYASRNSSQLTVHLRS--HTGD   29 (29)
T ss_dssp             CCCEECSSSSCEESSHHHHHHHHTT--CCSC
T ss_pred             CCcceeeecccccCCchheEEeeec--ccCc
Confidence            6899999999999999999999999  8863

>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.46  E-value=4e-05  Score=41.88  Aligned_cols=31  Identities=32%  Similarity=0.471  Sum_probs=28.0

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCCCCC
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVHQP   44 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~   44 (342)
                      .|...|+.|||.|....+|++|...  |++++|
T Consensus         3 rk~~~ce~cgk~frdvyhlnrhkls--hs~ekp   33 (35)
T d2epra1           3 RKQVACEICGKIFRDVYHLNRHKLS--HSGEKP   33 (35)
T ss_dssp             CCSEEETTTTEEESSHHHHHHHGGG--SCSCCC
T ss_pred             chhhhHHHHHHHHHHHHHHHhhhcc--cCCCCC
Confidence            3557899999999999999999999  999987

>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of T7 DNA polymerase
species: Bacteriophage T7 [TaxId: 10760]

Probab=97.35  E-value=0.00018  Score=58.96  Aligned_cols=68  Identities=18%  Similarity=0.202  Sum_probs=42.3

Q ss_pred             ceecccccccccCCCcccccceEEeecCC-CCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHHHHHhcC
Q 019380          126 AVAMDCEMVGGGSNGTLDLCARVCLVDED-ENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKILEILNNG  204 (342)
Q Consensus       126 ~v~~D~Ettg~~~~~~~~il~~v~vv~~~-~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~~~l~~~  204 (342)
                      +++||+||+|+..+.. .+ --+++.+.+ +++.  ++ .+                +      ...+.++++.+++.  
T Consensus         1 il~~DIET~gl~~~~~-~I-~ci~~~d~~~~~~~--~~-~~----------------~------~~~~~l~~~~~~l~--   51 (204)
T d1x9ma1           1 MIVSDIEANALLESVT-KF-HCGVIYDYSTAEYV--SY-RP----------------S------DFGAYLDALEAEVA--   51 (204)
T ss_dssp             CEEEEEEESSCGGGCC-CE-EEEEEEETTTTEEE--EE-CG----------------G------GHHHHHHHHHHHHH--
T ss_pred             CEEEEecCCCCCCCCC-EE-EEEEEEECCCCeEE--EE-eC----------------C------CchhHHHHHHHHHh--
Confidence            4789999999854322 12 234444443 3332  11 01                0      24567888888883  


Q ss_pred             CCccccccCCCCCeEEEeeC-chhhhhhcc
Q 019380          205 ESTGRLMLDDGKARLLVGHG-LEHDLDSLR  233 (342)
Q Consensus       205 ~~~~~~~~~~~~~~~lvgh~-~~~D~~~l~  233 (342)
                                 ...+||||| ..||+.+|+
T Consensus        52 -----------~~D~ivghN~~~FD~P~L~   70 (204)
T d1x9ma1          52 -----------RGGLIVFHNGHKYDVPALT   70 (204)
T ss_dssp             -----------TTCCEEESSTTTTHHHHHH
T ss_pred             -----------cCCEEEEEccccccHHHHH
Confidence                       345899999 669999987

>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA polymerases {Archaeon Thermococcus gorgonarius [TaxId: 71997]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Archaeon Thermococcus gorgonarius [TaxId: 71997]

Probab=97.35  E-value=0.00052  Score=61.26  Aligned_cols=124  Identities=14%  Similarity=0.144  Sum_probs=76.6

Q ss_pred             CCCCcceeccccccccc-CC-CcccccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHHHHHH
Q 019380          121 CRGPKAVAMDCEMVGGG-SN-GTLDLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVKDKIL  198 (342)
Q Consensus       121 ~~~~~~v~~D~Ettg~~-~~-~~~~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~~~~~  198 (342)
                      .+..++++||.|+.... .. ....+ ..+++.+..+..++..               -++....+.-..+..+++.+|.
T Consensus       132 ~~~~r~~s~DIE~~~~~g~~~~~~~I-~~Is~~~~~~~~~~~~---------------~~~~~~~v~~~~~E~~lL~~f~  195 (347)
T d1tgoa1         132 DEELKMLAFDIETLYHEGEEFAEGPI-LMISYADEEGARVITW---------------KNIDLPYVDVVSTEKEMIKRFL  195 (347)
T ss_dssp             CCCCCEEEEEEEECCCSSSSTTCSCE-EEEEEEETTEEEEEES---------------SCCCCTTEEECSSHHHHHHHHH
T ss_pred             CCCceEEEEEEEeccCCCCCcccCcE-EEEEEecCCCcEEEEe---------------cCccCccceeeCCHHHHHHHHH
Confidence            45567899999997432 11 12223 5566655544443211               0111222334567888999999


Q ss_pred             HHHhcCCCccccccCCCCCeEEEeeCc-hhhhhhcc-------ccC----------------------CCcceeeccccc
Q 019380          199 EILNNGESTGRLMLDDGKARLLVGHGL-EHDLDSLR-------MNY----------------------PDHMLRDTAKYR  248 (342)
Q Consensus       199 ~~l~~~~~~~~~~~~~~~~~~lvgh~~-~~D~~~l~-------~~~----------------------~~~~~~Dt~~l~  248 (342)
                      +++.+.           .-.+|+|||. .||+.+|.       +..                      +-...+|+..+.
T Consensus       196 ~~i~~~-----------dPDii~g~N~~~FD~pyL~~R~~~~~i~~~~~r~~~~~~~~~~~~~~~~~i~Gr~~~D~~~~~  264 (347)
T d1tgoa1         196 KVVKEK-----------DPDVLITYNGDNFDFAYLKKRSEKLGVKFILGREGSEPKIQRMGDRFAVEVKGRIHFDLYPVI  264 (347)
T ss_dssp             HHHHHH-----------CCSEEEESSGGGTHHHHHHHHHHHTTCCCCCSTTSCCCEEEECSSSEEEECTTSEEEEHHHHH
T ss_pred             HHHhhc-----------CccceeeccccCCchHHHHHHHHHhCCCCccccccCccceeccCceeEEecCCeEEeeHHHHH
Confidence            999432           1249999997 67999885       111                      112356776666


Q ss_pred             cccccCCCCccHHHHHHHHhCCcC
Q 019380          249 PLMKTNLVSHSLKYLTRTYLGYDI  272 (342)
Q Consensus       249 ~~~~~~~~~~~L~~l~~~~~~~~~  272 (342)
                      +... ...+|+|+.+|+.+||...
T Consensus       265 ~~~~-~l~sy~L~~va~~~l~~~K  287 (347)
T d1tgoa1         265 RRTI-NLPTYTLEAVYEAIFGQPK  287 (347)
T ss_dssp             HHHC-CCSCCCHHHHHHHHHSSCC
T ss_pred             HHhc-ccccccHHHHHHHhcCCCC
Confidence            5433 4568999999999988773

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.00015  Score=36.97  Aligned_cols=26  Identities=31%  Similarity=0.499  Sum_probs=23.9

Q ss_pred             cccccccccCCHHHHHHHHhhhccCCCC
Q 019380           16 KCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (342)
Q Consensus        16 ~C~~C~k~f~~~~~L~~H~~~~~H~~~~   43 (342)
                      +|+.|.|+|.++.-|+.|-+.  |++++
T Consensus         2 qcp~c~k~f~skyylkvhnr~--htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRK--HTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHH--HSSCC
T ss_pred             cCcchHHHHHHhHhhhhcccc--ccCCC
Confidence            699999999999999999999  88864

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00031  Score=36.73  Aligned_cols=23  Identities=39%  Similarity=0.647  Sum_probs=21.9

Q ss_pred             cccccccccccCCHHHHHHHHhh
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      ||.|..|+-+|.++.+|..||+.
T Consensus         1 py~C~~CnF~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PYHCTYCNFSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CEECSSSSCEESSHHHHHHHHHS
T ss_pred             CcccceeeeeEeeccchhHhhhh
Confidence            79999999999999999999987

>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.88  E-value=0.0003  Score=35.86  Aligned_cols=26  Identities=23%  Similarity=0.268  Sum_probs=23.7

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|+.|.++|..+-.|..|-+.|.|++
T Consensus         2 qcp~c~k~f~skyylkvhnr~htgek   27 (27)
T d2dlqa4           2 ECPTCHKKFLSKYYLKVHNRKHTGEK   27 (27)
T ss_dssp             CCTTTCCCCSSHHHHHHHHHHHSSCC
T ss_pred             cCcchHHHHHHhHhhhhccccccCCC
Confidence            38999999999999999999999875

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.84  E-value=0.00041  Score=39.75  Aligned_cols=29  Identities=24%  Similarity=0.524  Sum_probs=25.9

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      .+.|+|..|++.|.+..+|-.||+.  |..+
T Consensus         3 ~r~~~C~~C~k~F~s~qALGGH~~~--Hr~~   31 (37)
T d1njqa_           3 PRSYTCSFCKREFRSAQALGGHMNV--HRRD   31 (37)
T ss_dssp             SSSEECTTTCCEESSHHHHHHHHHT--TCCS
T ss_pred             CCccCCCCCCCccCCcccccchHhh--hcch
Confidence            4689999999999999999999999  7544

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.84  E-value=0.00043  Score=34.68  Aligned_cols=24  Identities=33%  Similarity=0.664  Sum_probs=21.9

Q ss_pred             ccccccccccCCHHHHHHHHhhhccC
Q 019380           15 HKCVACYKQFKRKDHLIEHMKISYHS   40 (342)
Q Consensus        15 ~~C~~C~k~f~~~~~L~~H~~~~~H~   40 (342)
                      |+|..|.++|..++.|.+|+++  |.
T Consensus         1 ykcglcersfveksalsrhqrv--hk   24 (26)
T d1znfa_           1 YKCGLCERSFVEKSALSRHQRV--HK   24 (26)
T ss_dssp             CBCSSSCCBCSSHHHHHHHGGG--TC
T ss_pred             CcccchHHHHHHHHHHHHHHHh--hc
Confidence            7899999999999999999998  64

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.82  E-value=0.0003  Score=35.29  Aligned_cols=23  Identities=39%  Similarity=0.654  Sum_probs=21.4

Q ss_pred             cccccccccccCCHHHHHHHHhh
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      ||+|..|..+|.++..|+.||..
T Consensus         2 pykcsscsqqfmqkkdlqshmik   24 (26)
T d2dlqa1           2 PYKCSSCSQQFMQKKDLQSHMIK   24 (26)
T ss_dssp             SEECSSSCCEESSHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999853

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00059  Score=35.15  Aligned_cols=26  Identities=31%  Similarity=0.514  Sum_probs=24.3

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHS   40 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~   40 (342)
                      +||+|..|...-..++.|+.|+++  |+
T Consensus         2 kp~kck~cdyaaadsssl~kh~ri--hs   27 (28)
T d2dmda1           2 KPYKCKTCDYAAADSSSLNKHLRI--HS   27 (28)
T ss_dssp             CSEECSSSCCEESSHHHHHHHHHH--SC
T ss_pred             CCcccccccchhcchhhHhhhhhc--cc
Confidence            799999999999999999999999  76

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00066  Score=35.48  Aligned_cols=25  Identities=28%  Similarity=0.317  Sum_probs=22.4

Q ss_pred             ccccccccCChhhHHHHHhhcCCCC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      |+.||.....++.|..|.+.|++++
T Consensus         4 C~~Cg~~C~KPSvL~KHIRsHT~~R   28 (28)
T d1bboa1           4 CEECGIRAKKPSMLKKHIRTHTDVR   28 (28)
T ss_dssp             CTTTCCBCSSHHHHHHHHHHTSSCC
T ss_pred             ccccCcccCCHHHHHHHHHHhcCCC
Confidence            7888888999999999999999863

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.61  E-value=0.00071  Score=35.96  Aligned_cols=24  Identities=25%  Similarity=0.491  Sum_probs=22.0

Q ss_pred             Ccccccc--cccccCCHHHHHHHHhh
Q 019380           13 ARHKCVA--CYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        13 ~~~~C~~--C~k~f~~~~~L~~H~~~   36 (342)
                      |||.|..  |+|++...+.|..|++.
T Consensus         1 KPY~Ck~~gC~K~YtdPSSLRKH~k~   26 (29)
T d2glia5           1 KPYVCKLPGCTKRYTDPSSLRKHVKT   26 (29)
T ss_dssp             CCEECCSTTTCCEESSHHHHHHHHHH
T ss_pred             CCeecccCCCCcccCCHHHHHHHHHh
Confidence            6899965  99999999999999997

>d1uoca_ c.55.3.9 (A:) Pop2 RNase D domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: CAF1-like ribonuclease
domain: Pop2 RNase D domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.59  E-value=0.0024  Score=55.01  Aligned_cols=79  Identities=13%  Similarity=0.084  Sum_probs=54.3

Q ss_pred             CCeEEEeeCchhhhhhcc--c---c---------------CCCcceeecccccccccc-------------CCCCccHHH
Q 019380          216 KARLLVGHGLEHDLDSLR--M---N---------------YPDHMLRDTAKYRPLMKT-------------NLVSHSLKY  262 (342)
Q Consensus       216 ~~~~lvgh~~~~D~~~l~--~---~---------------~~~~~~~Dt~~l~~~~~~-------------~~~~~~L~~  262 (342)
                      ++..+|.++..+|+.+|-  +   .               +|  .++||..+++....             ...+.+|..
T Consensus       151 ~~~~wi~fhg~yD~~yl~k~l~~~~LP~~~~eF~~~v~~~FP--~iyDtK~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~  228 (286)
T d1uoca_         151 DSVTWITYHAAYDLGFLINILMNDSMPNNKEDFEWWVHQYMP--NFYDLNLVYKIIQEFKNPQLQQSSQQQQQQQYSLTT  228 (286)
T ss_dssp             TTSEEEESSTTHHHHHHHHHHTTSCCCSSHHHHHHHHHHHCS--SEEEHHHHHHHHTTTCC-------------CCSHHH
T ss_pred             CCcceEEecchHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCC--cceeHHHHHHHhhccccccccchhhhhccccCCHHH
Confidence            444555555557888876  1   1               34  37898777644322             123568999


Q ss_pred             HHHHHhCCcCCCCCCCcHHHHHHHHHHHHHHHhhh
Q 019380          263 LTRTYLGYDIQSGVHDPYEDCVSVMRLYKRFRRQD  297 (342)
Q Consensus       263 l~~~~~~~~~~~~~H~A~~Da~~t~~l~~~~~~~~  297 (342)
                      +++.+ +++-.+..|.|=.||.+|+.+|.++.+..
T Consensus       229 ia~~l-~v~~~g~~HeAG~DSllT~~~F~~l~~~~  262 (286)
T d1uoca_         229 LADEL-GLPRFSIFTTTGGQSLLMLLSFCQLSKLS  262 (286)
T ss_dssp             HHHHT-TCCCCGGGGSHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhc-CCCccCCCcchHHHHHHHHHHHHHHHHHH
Confidence            99987 88844448999999999999999997643

>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: XFIN, third domain
species: Xenopus laevis [TaxId: 8355]

Probab=96.59  E-value=0.00059  Score=34.16  Aligned_cols=23  Identities=30%  Similarity=0.602  Sum_probs=20.7

Q ss_pred             cccccccccCChhhHHHHHhhcC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      .|..|.++|..++.|.+|+++|.
T Consensus         2 kcglcersfveksalsrhqrvhk   24 (26)
T d1znfa_           2 KCGLCERSFVEKSALSRHQRVHK   24 (26)
T ss_dssp             BCSSSCCBCSSHHHHHHHGGGTC
T ss_pred             cccchHHHHHHHHHHHHHHHhhc
Confidence            47899999999999999999885

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0011  Score=34.65  Aligned_cols=28  Identities=21%  Similarity=0.416  Sum_probs=25.3

Q ss_pred             cccccccccccCCHHHHHHHHhhhccCCCC
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHSVHQ   43 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~   43 (342)
                      .|.|+.||..-..++.|+.|.+.  |++++
T Consensus         1 kYvC~~Cg~~C~KPSvL~KHIRs--HT~~R   28 (28)
T d1bboa1           1 KYICEECGIRAKKPSMLKKHIRT--HTDVR   28 (28)
T ss_dssp             CCBCTTTCCBCSSHHHHHHHHHH--TSSCC
T ss_pred             CccccccCcccCCHHHHHHHHHH--hcCCC
Confidence            48899999999999999999999  98763

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.00084  Score=35.23  Aligned_cols=28  Identities=25%  Similarity=0.374  Sum_probs=23.9

Q ss_pred             CcccccccccccCCHHHHHHHHhhhccCC
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKISYHSV   41 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~~~H~~   41 (342)
                      +||+|+.|...-..+++|+.|+++. |+.
T Consensus         1 kpy~cqyc~yrsadssnlkthiktk-hsk   28 (30)
T d1klra_           1 KTYQCQYCEFRSADSSNLKTHIKTK-HSK   28 (30)
T ss_dssp             CCCCCSSSSCCCSCSHHHHHHHHHH-TSS
T ss_pred             CCccccccccccccchhhhhhhhcc-ccc
Confidence            6899999998888899999999874 554

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.38  E-value=0.00091  Score=34.81  Aligned_cols=24  Identities=29%  Similarity=0.535  Sum_probs=21.8

Q ss_pred             Cccccc--ccccccCCHHHHHHHHhh
Q 019380           13 ARHKCV--ACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        13 ~~~~C~--~C~k~f~~~~~L~~H~~~   36 (342)
                      .||+|+  -|++.|+..+.|++|.++
T Consensus         2 ~py~c~hegcdk~fs~ps~lkrhekv   27 (29)
T d2j7ja2           2 LPYECPHEGCDKRFSLPSRLKRHEKV   27 (29)
T ss_dssp             CCEECCSTTCCCEESSHHHHHHHHHH
T ss_pred             CCccCCccCccccccCHHHHhhhhhc
Confidence            589996  599999999999999998

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.36  E-value=0.0012  Score=34.33  Aligned_cols=29  Identities=28%  Similarity=0.507  Sum_probs=26.3

Q ss_pred             CCcccccccccccCCHHHHHHHHhhhccCCC
Q 019380           12 TARHKCVACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        12 ~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      |..|.|..|...|.+...|.-||..  |+++
T Consensus         2 eqvftcs~cqe~f~rrmelr~hmvs--htge   30 (30)
T d2dlqa3           2 EQVFTCSVCQETFRRRMELRLHMVS--HTGE   30 (30)
T ss_dssp             CCCEECSSSCCEESSHHHHHHHHHH--HSSS
T ss_pred             cceEEeHHHHHHHHHHHhheeeeec--ccCC
Confidence            5679999999999999999999999  8864

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=96.21  E-value=0.00057  Score=35.77  Aligned_cols=28  Identities=29%  Similarity=0.484  Sum_probs=24.4

Q ss_pred             Ccccc--cccccccCCHHHHHHHHhhhccCCC
Q 019380           13 ARHKC--VACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        13 ~~~~C--~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      |||.|  .-|.|.|.+.-+|.+|..+  |+++
T Consensus         1 ~pfpc~~egc~kgf~tlhhltrhs~t--htge   30 (30)
T d1tf3a2           1 KPFPCKEEGCEKGFTSLHHLTRHSLT--HTGE   30 (30)
T ss_dssp             CSEECCCSSCCCEESSTTHHHHHHHH--HHTC
T ss_pred             CCcCcccccccccchhhhhhhhhhcc--ccCC
Confidence            68888  4699999999999999999  8764

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.00042  Score=37.22  Aligned_cols=27  Identities=26%  Similarity=0.442  Sum_probs=23.2

Q ss_pred             Ccccccc--cccccCCHHHHHHHH-hhhccCC
Q 019380           13 ARHKCVA--CYKQFKRKDHLIEHM-KISYHSV   41 (342)
Q Consensus        13 ~~~~C~~--C~k~f~~~~~L~~H~-~~~~H~~   41 (342)
                      |||.|+.  |.|.|+..+..-.|+ ++  |+.
T Consensus         1 kPY~C~~~gC~KafsNsSDraKHqnRT--Hs~   30 (31)
T d2glia4           1 KPYMCEHEGCSKAFSNASDRAKHQNRT--HSN   30 (31)
T ss_dssp             CCEECCSTTCCCEESSSSTTHHHHHHT--TCS
T ss_pred             CCccccCCChhhhhcchhhhhhhcccc--ccC
Confidence            6999966  999999999999997 77  764

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.0012  Score=34.56  Aligned_cols=23  Identities=17%  Similarity=0.469  Sum_probs=20.4

Q ss_pred             cccccccccCChhhHHHHHhhcC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      +|..||+.|..+...++|.++|.
T Consensus         5 ~C~~CgrkFArsderkRH~kiH~   27 (28)
T d1a1ia3           5 ACDICGRKFARSDERKRHTKIHL   27 (28)
T ss_dssp             ECTTTCCEESSHHHHHHHHGGGC
T ss_pred             ccchhhhhhhcchhhhhhhhhcc
Confidence            47889999999999999999885

>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Escherichia coli [TaxId: 562]

Probab=96.08  E-value=0.0066  Score=54.67  Aligned_cols=99  Identities=16%  Similarity=0.234  Sum_probs=61.6

Q ss_pred             hcCCCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCch-hhhhhcc-------cc--------------------
Q 019380          184 IKNAMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR-------MN--------------------  235 (342)
Q Consensus       184 l~~~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~-------~~--------------------  235 (342)
                      +...++..+++..|.+++.+.           .-.||+|||+. ||+.+|.       +.                    
T Consensus       194 v~~~~~E~~LL~~F~~~i~~~-----------dPDii~GyNi~~FDlpyL~~Ra~~~~i~~~lgr~~~~~~~~~~~~~~~  262 (388)
T d1q8ia1         194 LEYVASRPQLLEKLNAWFANY-----------DPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNSELEWREHGFKNG  262 (388)
T ss_dssp             EEEESSHHHHHHHHHHHHHHH-----------CCSEEEESSTTTTHHHHHHHHHHHTTCCCCCSSSSCCCEEEEECSSSC
T ss_pred             EEEeCCHHHHHHHHHHHHHHc-----------CCCEEEecCCCCCCHHHHHHHHHHhCCCchhhhcCCcceeEEcccccc
Confidence            334567889999999999432           22499999965 6999885       00                    


Q ss_pred             -----CCCcceeeccccccccccCCCCccHHHHHHHHhCCcCCCC--------------------CCCcHHHHHHHHHHH
Q 019380          236 -----YPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSG--------------------VHDPYEDCVSVMRLY  290 (342)
Q Consensus       236 -----~~~~~~~Dt~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~--------------------~H~A~~Da~~t~~l~  290 (342)
                           .+-..++|...+.+..+....+|+|+.+|+.+||..-...                    ..-.+.||..+.+|+
T Consensus       263 ~~~~~i~Gr~~lD~~~~~k~~~~~~~sy~L~~Va~~~Lg~~K~~~~~~~~~~~~~~~~~~d~~~l~~Y~~~D~~Lv~~L~  342 (388)
T d1q8ia1         263 VFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIF  342 (388)
T ss_dssp             EEEEEBTTBEEEEHHHHHHHSCCCCSCCCHHHHHHTTC------------CTHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeecceEEEeehhHHHHhhhccccccCHhHhhhhhhcccccccChhhhHHHHHhcChhhHHHHHHHHHHHHHHHHHHH
Confidence                 1112345655544444445678999999999988652110                    011245899999998


Q ss_pred             HHH
Q 019380          291 KRF  293 (342)
Q Consensus       291 ~~~  293 (342)
                      .++
T Consensus       343 ~k~  345 (388)
T d1q8ia1         343 HKT  345 (388)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            865

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0019  Score=36.59  Aligned_cols=27  Identities=26%  Similarity=0.509  Sum_probs=24.8

Q ss_pred             CCCCcccc--cccccccCCHHHHHHHHhh
Q 019380           10 RSTARHKC--VACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        10 ~~~~~~~C--~~C~k~f~~~~~L~~H~~~   36 (342)
                      +.+|||.|  +-|+.+|.+..+|..|.+.
T Consensus         2 ~ddkPF~C~~pGC~q~F~neDhL~vHk~K   30 (38)
T d1bhia_           2 SDDKPFLCTAPGCGQRFTNEDHLAVHKHK   30 (38)
T ss_dssp             TTCCCEECCCTTTCCEESSHHHHHHHHHH
T ss_pred             CCCCceecCCCCccccccchHHHHHhhhh
Confidence            35899999  7899999999999999988

>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=95.98  E-value=0.0017  Score=33.78  Aligned_cols=20  Identities=30%  Similarity=0.504  Sum_probs=17.8

Q ss_pred             cccccccCChhhHHHHHhhc
Q 019380           82 NLCMNIFDSPSSLIKHKEAC  101 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~~~h  101 (342)
                      .-|+++|..++.|++|.++|
T Consensus         9 egcdk~fs~ps~lkrhekvh   28 (29)
T d2j7ja2           9 EGCDKRFSLPSRLKRHEKVH   28 (29)
T ss_dssp             TTCCCEESSHHHHHHHHHHH
T ss_pred             cCccccccCHHHHhhhhhcc
Confidence            45889999999999999987

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0026  Score=33.26  Aligned_cols=24  Identities=33%  Similarity=0.477  Sum_probs=22.1

Q ss_pred             CcccccccccccCCHHHHHHHHhh
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      |||+|..|.-...+.++|..|++.
T Consensus         1 rPFkC~~CsFDtkq~SnL~kH~kk   24 (29)
T d1x5wa2           1 RPFKCNYCSFDTKQPSNLSKHMKK   24 (29)
T ss_dssp             CSEECSSSSCEESSHHHHHHHHHH
T ss_pred             CCcccceecccccCcchHHHHHHH
Confidence            699999999889999999999975

>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.86  E-value=0.0021  Score=33.47  Aligned_cols=25  Identities=20%  Similarity=0.369  Sum_probs=22.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      .|..|...|.++-.|+.||-.|.|+
T Consensus         6 tcs~cqe~f~rrmelr~hmvshtge   30 (30)
T d2dlqa3           6 TCSVCQETFRRRMELRLHMVSHTGE   30 (30)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHHSSS
T ss_pred             EeHHHHHHHHHHHhheeeeecccCC
Confidence            4889999999999999999999875

>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.0026  Score=32.56  Aligned_cols=23  Identities=35%  Similarity=0.624  Sum_probs=20.7

Q ss_pred             cccccccccccCCHHHHHHHHhh
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      ||+|..|||.+.++.+|..|...
T Consensus         1 pf~c~kcgkcyfrkenllehear   23 (28)
T d2dlqa2           1 PFECPKCGKCYFRKENLLEHEAR   23 (28)
T ss_dssp             SCBCTTTCCBCSSHHHHHHHHHH
T ss_pred             CCccccchhhhhhHhHHHHHHHH
Confidence            79999999999999999998754

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=95.79  E-value=0.0029  Score=33.88  Aligned_cols=27  Identities=37%  Similarity=0.610  Sum_probs=23.0

Q ss_pred             cccccccccccCCHHHHHHHHhhhccCC
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKISYHSV   41 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~~H~~   41 (342)
                      ||.|..|++.|+++..|.+|.... |.+
T Consensus         1 Pf~C~~C~R~FaRrDLlLRH~qKl-H~g   27 (31)
T d2adra2           1 PYPCGLCNRAFTRRDLLIRHAQKI-HSG   27 (31)
T ss_dssp             SEECTTTCCEESSHHHHHHHHTTT-SCC
T ss_pred             CcccccccchhhHHHHHHHHHHHH-hcC
Confidence            799999999999999999998542 654

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=95.77  E-value=0.0028  Score=31.76  Aligned_cols=24  Identities=42%  Similarity=0.836  Sum_probs=21.7

Q ss_pred             cccccccccccCCHHHHHHHHhhh
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKIS   37 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~~   37 (342)
                      .|.|+.|-|.|+++.++..|+++.
T Consensus         1 vypcp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           1 VYPCPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             CEECTTTCCEESCHHHHHHHHHHH
T ss_pred             CcCCchhhHHhccccCceEEEEEe
Confidence            388999999999999999999863

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0032  Score=36.20  Aligned_cols=26  Identities=23%  Similarity=0.500  Sum_probs=23.0

Q ss_pred             CCCCcccccccccccCCHHHHHHHHh
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMK   35 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~   35 (342)
                      ++-|||+|..|+|.|.-...+.+|..
T Consensus         1 TGiKPYeC~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           1 TGIKPYECNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CCCCCEECSSSCCEESCHHHHHHHHH
T ss_pred             CCCCceeccchhhhhhhHHHHHHhhh
Confidence            46789999999999999998888875

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.50  E-value=0.0041  Score=32.37  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=19.8

Q ss_pred             cccccccccCChhhHHHHHhhcC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      .|..|..+|..+.+|..||+...
T Consensus         3 ~C~~CnF~FKTKGNLTKHmkSKa   25 (29)
T d1bboa2           3 HCTYCNFSFKTKGNLTKHMKSKA   25 (29)
T ss_dssp             ECSSSSCEESSHHHHHHHHHSSS
T ss_pred             ccceeeeeEeeccchhHhhhhhh
Confidence            37889999999999999998644

>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA polymerases {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=95.30  E-value=0.025  Score=51.06  Aligned_cols=154  Identities=14%  Similarity=0.143  Sum_probs=81.2

Q ss_pred             CCCCcceecccccccc---c-CCCcc--cccceEEeecCCCCeEEeeecCCCCCccccccccCCCCHhhhcCCCChHHHH
Q 019380          121 CRGPKAVAMDCEMVGG---G-SNGTL--DLCARVCLVDEDENVIFHTYVQPQLPVTNYRYEVTGLTEEDIKNAMPLKEVK  194 (342)
Q Consensus       121 ~~~~~~v~~D~Ettg~---~-~~~~~--~il~~v~vv~~~~~~~~~~lv~p~~~i~~~~~~i~GIt~e~l~~~~~~~~v~  194 (342)
                      .+..++++||+|+...   + ++...  ..+..+++.+.++....-.+-...  .......+.|   ..+....+..+++
T Consensus       183 ~p~l~~lsfDIE~~~~~~~~fP~p~~~~~~ii~I~~~~~~~~~~v~~~~~~~--~~~~~~~~~~---~~v~~~~sE~eLL  257 (410)
T d1s5ja1         183 IPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRND--VNEGSVKLDG---ISVERFNTEYELL  257 (410)
T ss_dssp             CCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEEETTSCEEEEEECSSC--CCCCCEEETT---EEEEEESSHHHHH
T ss_pred             CCCceEEEEEEEECCCCCCCCCCccccCceEEEEEEEcccCCEEEEEEccCC--CccccccCCC---eEEEEECCHHHHH
Confidence            3566789999998421   1 22111  122566666655544221111111  1111111112   1234456789999


Q ss_pred             HHHHHHHhcCCCccccccCCCCCeEEEeeCch-hhhhhcc-----ccCCC-----------------cceeec-------
Q 019380          195 DKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR-----MNYPD-----------------HMLRDT-------  244 (342)
Q Consensus       195 ~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~-----~~~~~-----------------~~~~Dt-------  244 (342)
                      .+|.+++.             .-.+|+|||+. ||+.+|.     +....                 ..-+|.       
T Consensus       258 ~~F~~~i~-------------dpDii~GyN~~~FD~pyL~~Ra~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~d  324 (410)
T d1s5ja1         258 GRFFDILL-------------EYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGKDEAKYLAGLHIDLYKFFFNK  324 (410)
T ss_dssp             HHHHHHHT-------------TCSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCSTTCCEETTSEEEEHHHHHTSH
T ss_pred             HHHHhhhc-------------ccceEEEecccCCcHHHHHHHHHHhCCccccccccccCccceeEecceEEEecceeeeh
Confidence            99999992             22489999965 6999886     11100                 001111       


Q ss_pred             -cccccccccCCCCccHHHHHHHHhCCcCCCCCCC-------------cHHHHHHHHHHHHHHH
Q 019380          245 -AKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGVHD-------------PYEDCVSVMRLYKRFR  294 (342)
Q Consensus       245 -~~l~~~~~~~~~~~~L~~l~~~~~~~~~~~~~H~-------------A~~Da~~t~~l~~~~~  294 (342)
                       ...++. .....+|+|+.+|+.+||.. ....+.             .+.||..+.+|+.++.
T Consensus       325 ~~~~~~~-~~~l~sy~Ld~Va~~~Lg~~-K~d~~~~~~~~~~~~l~~Y~~~D~~L~~~L~~~~~  386 (410)
T d1s5ja1         325 AVRNYAF-EGKYNEYNLDAVAKALLGTS-KVKVDTLISFLDVEKLIEYNFRDAEITLQLTTFNN  386 (410)
T ss_dssp             HHHHHTS-TTCCSSCSHHHHHHHHHCCC-CC--SSCTTTCCHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred             HHHHHhh-ccCCCCCCHHHHHHHHhCcC-cccCCCccccCCHHHHHHhhHHHHHHHHHHHhhhh
Confidence             111111 11346899999999998875 222111             2458888888866554

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.94  E-value=0.0058  Score=32.32  Aligned_cols=25  Identities=20%  Similarity=0.323  Sum_probs=22.2

Q ss_pred             cccccccccCChhhHHHHHhhcCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      +|+.|+..|.++..+..|.+.|.|.
T Consensus         5 ~cpic~qrfkrkdrmsyhvrshdg~   29 (32)
T d2epqa1           5 SCPVCGLRFKRKDRMSYHVRSHDGS   29 (32)
T ss_dssp             EETTTTEECSCHHHHHHHHHHHSCC
T ss_pred             ccchHHHHhhccccceEeeecccCc
Confidence            5788999999999999999999875

>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=94.64  E-value=0.0092  Score=31.07  Aligned_cols=30  Identities=20%  Similarity=0.189  Sum_probs=24.5

Q ss_pred             CCcccCCCCCcccCCcccccccccCChhhHHHHHhhcCCC
Q 019380           65 GPLSKAHCSGIFSDRGCNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        65 ~~~~C~~C~k~f~~~~C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      +||||          .-.-|.|.|..-.+|.+|.-.|.|+
T Consensus         1 ~pfpc----------~~egc~kgf~tlhhltrhs~thtge   30 (30)
T d1tf3a2           1 KPFPC----------KEEGCEKGFTSLHHLTRHSLTHTGE   30 (30)
T ss_dssp             CSEEC----------CCSSCCCEESSTTHHHHHHHHHHTC
T ss_pred             CCcCc----------ccccccccchhhhhhhhhhccccCC
Confidence            47788          3356889999999999999988875

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.11  E-value=0.014  Score=33.15  Aligned_cols=26  Identities=23%  Similarity=0.407  Sum_probs=22.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSA  105 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~  105 (342)
                      .|..|++.|.....|--||+.|..++
T Consensus         7 ~C~~C~k~F~s~qALGGH~~~Hr~~r   32 (37)
T d1njqa_           7 TCSFCKREFRSAQALGGHMNVHRRDR   32 (37)
T ss_dssp             ECTTTCCEESSHHHHHHHHHTTCCSC
T ss_pred             CCCCCCCccCCcccccchHhhhcchH
Confidence            47899999999999999999987554

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.02  E-value=0.017  Score=29.63  Aligned_cols=23  Identities=30%  Similarity=0.460  Sum_probs=21.0

Q ss_pred             cccccccccccCCHHHHHHHHhh
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      |-+|+.|..+.+++..|..|.++
T Consensus         2 pekc~ecsyscsskaalrvh~ri   24 (28)
T d1x5wa1           2 PEKCSECSYSCSSKAALRIHERI   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHGG
T ss_pred             CccCcccccccCcHHHHHHhhcc
Confidence            56899999999999999999998

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=93.79  E-value=0.019  Score=30.60  Aligned_cols=24  Identities=29%  Similarity=0.606  Sum_probs=20.3

Q ss_pred             ccccccccCChhhHHHHHhhcCCC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      |..|++.|.++.-|-+|+++-|+.
T Consensus         4 C~~C~R~FaRrDLlLRH~qKlH~g   27 (31)
T d2adra2           4 CGLCNRAFTRRDLLIRHAQKIHSG   27 (31)
T ss_dssp             CTTTCCEESSHHHHHHHHTTTSCC
T ss_pred             cccccchhhHHHHHHHHHHHHhcC
Confidence            788999999999999999765543

>d1x5wa1 g.37.1.1 (A:8-35) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.34  E-value=0.028  Score=28.80  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=19.3

Q ss_pred             cccccccccCChhhHHHHHhhcC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      .|+.|..+.+.+..|+.|.|+|.
T Consensus         4 kc~ecsyscsskaalrvh~rihc   26 (28)
T d1x5wa1           4 KCSECSYSCSSKAALRIHERIHC   26 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHGGGC
T ss_pred             cCcccccccCcHHHHHHhhcccc
Confidence            47888888888999999998886

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.022  Score=31.02  Aligned_cols=24  Identities=21%  Similarity=0.668  Sum_probs=21.1

Q ss_pred             ccccccccCChhhHHHHHhhcCCC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      |..|||+|+++..+.+|.....|.
T Consensus         7 cskcgktftrrntm~rha~nc~g~   30 (37)
T d1x6ha1           7 CSKCGKTFTRRNTMARHADNCAGP   30 (37)
T ss_dssp             CSSSCCEESCHHHHHHHHHHCCCC
T ss_pred             ecccccchhcchHHHHHhhhcCCC
Confidence            789999999999999998877764

>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA polymerases {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Bacteriophage T4 [TaxId: 10665]

Probab=92.95  E-value=0.32  Score=42.58  Aligned_cols=94  Identities=16%  Similarity=0.101  Sum_probs=59.2

Q ss_pred             CChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCch-hhhhhcccc-------------CCC---------------
Q 019380          188 MPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLRMN-------------YPD---------------  238 (342)
Q Consensus       188 ~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~~~-------------~~~---------------  238 (342)
                      .+..+++.+|.+++.+.           .-.+|+|||+. ||+..|.-.             .+.               
T Consensus       188 ~~E~~lL~~F~~~~~~~-----------dPDii~G~N~~~FD~pYL~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (372)
T d1noya_         188 DNERDMLMEYINLWEQK-----------RPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSK  256 (372)
T ss_dssp             SCHHHHHHHHHHHHHHS-----------CCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGCSC
T ss_pred             CCHHHHHHHHHHHHHHc-----------CCCEEEEEccCCcchHHHHHHHHHhccccchhhhhhcccccceeeecccccc
Confidence            68899999999999432           23499999965 699887600             000               


Q ss_pred             -------cceeecccccc-ccccCCCCccHHHHHHHHhCCcCCCCCCC----------------cHHHHHHHHHHHHHH
Q 019380          239 -------HMLRDTAKYRP-LMKTNLVSHSLKYLTRTYLGYDIQSGVHD----------------PYEDCVSVMRLYKRF  293 (342)
Q Consensus       239 -------~~~~Dt~~l~~-~~~~~~~~~~L~~l~~~~~~~~~~~~~H~----------------A~~Da~~t~~l~~~~  293 (342)
                             ...+|...+.. .......+++|..++..++|..- ...+.                .+.||..+.+|+.++
T Consensus       257 ~~~~~~~~~~~d~~~~~~~~~~~~~~sy~L~~v~~~~l~~~K-~~~~~~l~~~~~~d~~~l~~Yni~D~~L~~~L~~kl  334 (372)
T d1noya_         257 EIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGK-LPYDGPINKLRETNHQRYISYNIIDVESVQAIDKIR  334 (372)
T ss_dssp             EEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCC-CCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeeeeccceEEEeehhheecccccchhhhhhhheeeccccCC-CCcchhHHHHHHhChhHhheecHHHHHHHHHHHHHH
Confidence                   11122222121 11235668999999999998873 22211                134888888888774

>d2dmda1 g.37.1.1 (A:34-61) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.73  E-value=0.028  Score=28.68  Aligned_cols=23  Identities=35%  Similarity=0.403  Sum_probs=19.3

Q ss_pred             cccccccccCChhhHHHHHhhcC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      .|..|...-...++|..|+|+|.
T Consensus         5 kck~cdyaaadsssl~kh~rihs   27 (28)
T d2dmda1           5 KCKTCDYAAADSSSLNKHLRIHS   27 (28)
T ss_dssp             ECSSSCCEESSHHHHHHHHHHSC
T ss_pred             ccccccchhcchhhHhhhhhccc
Confidence            36778888889999999999985

>d1x6ha1 g.37.1.1 (A:44-80) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.45  E-value=0.03  Score=30.49  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=21.1

Q ss_pred             cccccccccccCCHHHHHHHHhh
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      .|.|..|+|+|.+...+.+|...
T Consensus         4 afvcskcgktftrrntm~rha~n   26 (37)
T d1x6ha1           4 AFVCSKCGKTFTRRNTMARHADN   26 (37)
T ss_dssp             CEECSSSCCEESCHHHHHHHHHH
T ss_pred             eeeecccccchhcchHHHHHhhh
Confidence            68999999999999999999875

>d2dmda3 g.37.1.1 (A:62-90) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.97  E-value=0.047  Score=28.06  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=17.8

Q ss_pred             ccccccccCChhhHHHHHhhcCCC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      |..|...-..++.|..|.+.|+|.
T Consensus         6 cqlcsy~srnssqltvhlr~htgd   29 (29)
T d2dmda3           6 CQICPYASRNSSQLTVHLRSHTGD   29 (29)
T ss_dssp             CSSSSCEESSHHHHHHHHTTCCSC
T ss_pred             eeecccccCCchheEEeeecccCc
Confidence            344555566888999999999874

>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA polymerases {Bacteriophage RB69 [TaxId: 12353]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exonuclease domain of family B DNA polymerases
species: Bacteriophage RB69 [TaxId: 12353]

Probab=91.57  E-value=0.62  Score=40.73  Aligned_cols=161  Identities=16%  Similarity=0.126  Sum_probs=88.9

Q ss_pred             CCCcceeccccccccc----CCCcccccceEEeecCCCCe--EEeeecCCCCCccccc---------cccCCCCHhhhcC
Q 019380          122 RGPKAVAMDCEMVGGG----SNGTLDLCARVCLVDEDENV--IFHTYVQPQLPVTNYR---------YEVTGLTEEDIKN  186 (342)
Q Consensus       122 ~~~~~v~~D~Ettg~~----~~~~~~il~~v~vv~~~~~~--~~~~lv~p~~~i~~~~---------~~i~GIt~e~l~~  186 (342)
                      +..+.+.+|.|+...+    +....+.+..+++++.....  +|.....|........         ....+...+...+
T Consensus       106 ~~~~~~~~DIE~~~~~~~p~~~~~~~~i~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  185 (375)
T d1ih7a1         106 TKIRVANFDIEVTSPDGFPEPSQAKHPIDAITHYDSIDDRFYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEVPSEIIDK  185 (375)
T ss_dssp             GGSCEEEEEEEECCSSSCCCTTTCCSCEEEEEEEETTTTEEEEEEECCCTTCCCCCCCHHHHHSCTTTTCCCCCHHHHTT
T ss_pred             ccceeeeEEEEEecCccccCcccccccccceeeeeccCCeEEEEEecCCCcccccccccccccccccccccccccccCCC
Confidence            3456788999986432    22222223666666654333  3444444433222211         1222333333332


Q ss_pred             -----CCChHHHHHHHHHHHhcCCCccccccCCCCCeEEEeeCch-hhhhhcc--------------cc-----------
Q 019380          187 -----AMPLKEVKDKILEILNNGESTGRLMLDDGKARLLVGHGLE-HDLDSLR--------------MN-----------  235 (342)
Q Consensus       187 -----~~~~~~v~~~~~~~l~~~~~~~~~~~~~~~~~~lvgh~~~-~D~~~l~--------------~~-----------  235 (342)
                           ..+..+++.+|++++...           .-.||+|||+. ||+..|-              +.           
T Consensus       186 v~~~~~~sE~eLL~~F~~~~~~~-----------dPDiitGwN~~~FD~pYL~~R~~~~~~~~~~~~~~~~~~~~~~~~~  254 (375)
T d1ih7a1         186 IIYMPFDNEKELLMEYLNFWQQK-----------TPVILTGWNVESFDIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIE  254 (375)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHS-----------CCSEEEETTTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEE
T ss_pred             eEEEEcCCHHHHHHHHHHHHHhc-----------CCCEEEEcCCCCCCcHHHHHHHHhhhchhhhhhhhhcCCccEEEEE
Confidence                 367899999999998432           22499999965 6988875              00           


Q ss_pred             ----------CCCcceeecccccccc-ccCCCCccHHHHHHHHhCCcCCCC---CCC------------cHHHHHHHHHH
Q 019380          236 ----------YPDHMLRDTAKYRPLM-KTNLVSHSLKYLTRTYLGYDIQSG---VHD------------PYEDCVSVMRL  289 (342)
Q Consensus       236 ----------~~~~~~~Dt~~l~~~~-~~~~~~~~L~~l~~~~~~~~~~~~---~H~------------A~~Da~~t~~l  289 (342)
                                .....++|.+.+++.. .....+++|..++..++|..-...   -++            .+.||..+.+|
T Consensus       255 ~~~~~~~~~~~~g~~~~D~~~~~~~~~~~~~~s~~l~~v~~~~l~~~K~~~~~~~~~~~~~d~~~~~~Y~~~D~~L~~~L  334 (375)
T d1ih7a1         255 NMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRYISYNIIDVYRVLQI  334 (375)
T ss_dssp             CSSCEEEEEEETTCEEEEHHHHHHHHSSCCCSCCSHHHHHHHHTCCCCCCCSSCGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeccccceeccccceeeeHHHHHHHhhhccccchhhhHHHHHHhccccccCcccHHHHHHhChhHhhhhhHHHHHHHHHH
Confidence                      0012244544444332 335668999999999987762211   011            13477888888


Q ss_pred             HHHH
Q 019380          290 YKRF  293 (342)
Q Consensus       290 ~~~~  293 (342)
                      +.++
T Consensus       335 ~~kl  338 (375)
T d1ih7a1         335 DAKR  338 (375)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7764

>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transactivation domain of cre-bp1/atf-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.053  Score=30.52  Aligned_cols=21  Identities=24%  Similarity=0.292  Sum_probs=19.1

Q ss_pred             cccccccCChhhHHHHHhhcC
Q 019380           82 NLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      +-|+.+|.+..+|..|++.|.
T Consensus        12 pGC~q~F~neDhL~vHk~KH~   32 (38)
T d1bhia_          12 PGCGQRFTNEDHLAVHKHKHE   32 (38)
T ss_dssp             TTTCCEESSHHHHHHHHHHHH
T ss_pred             CCccccccchHHHHHhhhhhe
Confidence            678999999999999999886

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.97  E-value=0.082  Score=31.26  Aligned_cols=26  Identities=23%  Similarity=0.345  Sum_probs=22.7

Q ss_pred             CCCcccccccccccCCHHHHHHHHhh
Q 019380           11 STARHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        11 ~~~~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      +...|.|..|+|.|.....|..|...
T Consensus         3 E~~l~pCG~CgK~Ftd~~rLr~HEAQ   28 (53)
T d2eppa1           3 EAGILPCGLCGKVFTDANRLRQHEAQ   28 (53)
T ss_dssp             CCCCCCCTTTCCCCSCHHHHHHHHHH
T ss_pred             ccceeeccccccccCCHHHHhHhHHh
Confidence            45678999999999999999999887

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.44  E-value=0.054  Score=29.78  Aligned_cols=25  Identities=20%  Similarity=0.337  Sum_probs=22.3

Q ss_pred             cccccccccCChhhHHHHHhhcCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      .|+--++.|.....|..|+|+|+||
T Consensus         9 ~C~R~~~pf~a~YkLv~H~R~HTgE   33 (33)
T d2glia2           9 GCSRELRPFKAQYMLVVHMRRHTGE   33 (33)
T ss_dssp             TCTTTTCCCSSHHHHHHHTHHHHCC
T ss_pred             CCCCCCCcchhHHHHHHHHhhcCCC
Confidence            4777889999999999999999986

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.28  E-value=0.095  Score=26.67  Aligned_cols=23  Identities=26%  Similarity=0.520  Sum_probs=20.9

Q ss_pred             cccccccccccCCHHHHHHHHhh
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      .|.|+.|+....+++.|..|++.
T Consensus         2 k~qcphc~tiiarksdlrvhlrn   24 (28)
T d2ct1a1           2 KFHCPHCDTVIARKSDLGVHLRK   24 (28)
T ss_dssp             SEECSSSSCEESSHHHHHHHHHH
T ss_pred             CccCCcchhheeehhhhhHHhhh
Confidence            58999999999999999999875

>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.26  E-value=0.074  Score=28.23  Aligned_cols=21  Identities=29%  Similarity=0.439  Sum_probs=14.8

Q ss_pred             cccccccCChhhHHHHH-hhcC
Q 019380           82 NLCMNIFDSPSSLIKHK-EACS  102 (342)
Q Consensus        82 ~~C~k~F~~~~~L~~H~-~~h~  102 (342)
                      +-|.|.|+..+.-..|+ |+|.
T Consensus         8 ~gC~KafsNsSDraKHqnRTHs   29 (31)
T d2glia4           8 EGCSKAFSNASDRAKHQNRTHS   29 (31)
T ss_dssp             TTCCCEESSSSTTHHHHHHTTC
T ss_pred             CChhhhhcchhhhhhhcccccc
Confidence            44777777777777887 6664

>d2eppa1 g.37.1.1 (A:286-338) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.58  E-value=0.076  Score=31.42  Aligned_cols=23  Identities=26%  Similarity=0.637  Sum_probs=20.0

Q ss_pred             cccccccccCChhhHHHHHhhcC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      .|..|||.|+....|++|.-.|-
T Consensus         8 pCG~CgK~Ftd~~rLr~HEAQHG   30 (53)
T d2eppa1           8 PCGLCGKVFTDANRLRQHEAQHG   30 (53)
T ss_dssp             CCTTTCCCCSCHHHHHHHHHHHT
T ss_pred             eccccccccCCHHHHhHhHHhcC
Confidence            47899999999999999986665

>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.1  Score=26.75  Aligned_cols=19  Identities=26%  Similarity=0.468  Sum_probs=16.6

Q ss_pred             ccccccCChhhHHHHHhhc
Q 019380           83 LCMNIFDSPSSLIKHKEAC  101 (342)
Q Consensus        83 ~C~k~F~~~~~L~~H~~~h  101 (342)
                      -|+|.|...+.++.|+-+|
T Consensus         8 gC~K~Frd~saMRKHlhtH   26 (28)
T d1ubdc1           8 GCTKMFRDNSAMRKHLHTH   26 (28)
T ss_dssp             TCCCEESSHHHHHHHHGGG
T ss_pred             cHHHHhhchHHHHHHhhcc
Confidence            4899999999999998776

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.11  E-value=0.06  Score=35.09  Aligned_cols=30  Identities=30%  Similarity=0.701  Sum_probs=25.5

Q ss_pred             CCCCCCCCCcccccccccccCCHHHHHHHHhh
Q 019380            5 AELPKRSTARHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus         5 ~~~~~~~~~~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      .++|  +...|-|..|+|.|.+...|..|.++
T Consensus         8 ~D~p--G~gqfYCv~C~K~F~se~~l~~H~ks   37 (67)
T d1zr9a1           8 PDLP--GGGLHRCLACARYFIDSTNLKTHFRS   37 (67)
T ss_dssp             SSSG--GGGCSEETTTTEECSSHHHHHHHTTC
T ss_pred             CCCC--CCCEEecccccCccCCHHHHHHHHcc
Confidence            3455  67779999999999999999999875

>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.68  E-value=0.083  Score=29.01  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=18.9

Q ss_pred             cccccccCCHHHHHHHHhhhccCCC
Q 019380           18 VACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        18 ~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      +.-++.|..+..|..|+++  ||++
T Consensus        11 ~R~~~pf~a~YkLv~H~R~--HTgE   33 (33)
T d2glia2          11 SRELRPFKAQYMLVVHMRR--HTGE   33 (33)
T ss_dssp             TTTTCCCSSHHHHHHHTHH--HHCC
T ss_pred             CCCCCcchhHHHHHHHHhh--cCCC
Confidence            4445679999999999999  8874

>d2ct1a1 g.37.1.1 (A:44-71) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.38  E-value=0.13  Score=26.10  Aligned_cols=23  Identities=22%  Similarity=0.307  Sum_probs=19.7

Q ss_pred             cccccccccCChhhHHHHHhhcC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACS  102 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~  102 (342)
                      .|+.|+-...+++.|+.|++.-|
T Consensus         4 qcphc~tiiarksdlrvhlrnlh   26 (28)
T d2ct1a1           4 HCPHCDTVIARKSDLGVHLRKQH   26 (28)
T ss_dssp             ECSSSSCEESSHHHHHHHHHHTS
T ss_pred             cCCcchhheeehhhhhHHhhhcc
Confidence            48999999999999999998644

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=88.06  E-value=0.18  Score=27.04  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=19.6

Q ss_pred             CcccccccccccCCHHHHHHHHhh
Q 019380           13 ARHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        13 ~~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      ..|.|.-||-.|++.+.|..|+.-
T Consensus         7 arf~c~pcgirfss~stleahqty   30 (36)
T d1y0jb1           7 ARFMCLPCGIAFSSPSTLEAHQAY   30 (36)
T ss_dssp             CCCBCTTTCCBCSCHHHHHHHTTT
T ss_pred             cceeccccceeecChhHHHhhhhe
Confidence            468888898888888888888754

>d1x5wa2 g.37.1.1 (A:36-64) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.25  E-value=0.13  Score=26.66  Aligned_cols=24  Identities=33%  Similarity=0.468  Sum_probs=19.4

Q ss_pred             ccccccccCChhhHHHHHhhcCCC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      |..|..--+++++|..|++..|+.
T Consensus         5 C~~CsFDtkq~SnL~kH~kk~H~D   28 (29)
T d1x5wa2           5 CNYCSFDTKQPSNLSKHMKKFHGD   28 (29)
T ss_dssp             CSSSSCEESSHHHHHHHHHHHHSS
T ss_pred             cceecccccCcchHHHHHHHHccC
Confidence            577777778999999999887754

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.01  E-value=0.19  Score=26.04  Aligned_cols=23  Identities=22%  Similarity=0.287  Sum_probs=17.6

Q ss_pred             ccccccccCChhhHHHHHhhcCC
Q 019380           81 CNLCMNIFDSPSSLIKHKEACSL  103 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h~~  103 (342)
                      |..|.......++|..|.++.|+
T Consensus         5 cqyc~yrsadssnlkthiktkhs   27 (30)
T d1klra_           5 CQYCEFRSADSSNLKTHIKTKHS   27 (30)
T ss_dssp             CSSSSCCCSCSHHHHHHHHHHTS
T ss_pred             ccccccccccchhhhhhhhcccc
Confidence            56666667788999999987664

>d1vd4a_ g.41.3.1 (A:) Transcription initiation factor TFIIE-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zinc beta-ribbon
family: Transcriptional factor domain
domain: Transcription initiation factor TFIIE-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.16  E-value=0.16  Score=32.38  Aligned_cols=41  Identities=17%  Similarity=0.318  Sum_probs=25.6

Q ss_pred             CCCCCcccccccccccCCHHHHHHHHhhhccCCCCCccccCcccc
Q 019380            9 KRSTARHKCVACYKQFKRKDHLIEHMKISYHSVHQPKCAVCQKLS   53 (342)
Q Consensus         9 ~~~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~~C~~C~~~f   53 (342)
                      ++..+.|.|+.|+++|+.-..++  +..  .....+.|..|+...
T Consensus         9 ~~~~~~y~Cp~C~~~ys~Lda~~--L~d--~~~~~F~C~~C~~el   49 (62)
T d1vd4a_           9 STNRASFKCPVCSSTFTDLEANQ--LFD--PMTGTFRCTFCHTEV   49 (62)
T ss_dssp             CCSSSEEECSSSCCEEEHHHHHH--HEE--TTTTEEBCSSSCCBC
T ss_pred             cccCCceECCCCCCCcchhhHHH--hcC--cCCCeEEecCCCCEE
Confidence            35566799999999997654333  222  333444777776543

>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger peptide) {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Tramtrack protein (two zinc-finger peptide)
species: Drosophila melanogaster [TaxId: 7227]

Probab=86.08  E-value=0.19  Score=24.90  Aligned_cols=21  Identities=19%  Similarity=0.585  Sum_probs=17.9

Q ss_pred             ccccccccCChhhHHHHHhhc
Q 019380           81 CNLCMNIFDSPSSLIKHKEAC  101 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~~h  101 (342)
                      |+.|-+.|+++.++..|.++-
T Consensus         4 cp~cfkeftrkdnm~ahvkii   24 (26)
T d2drpa2           4 CPFCFKEFTRKDNMTAHVKII   24 (26)
T ss_dssp             CTTTCCEESCHHHHHHHHHHH
T ss_pred             CchhhHHhccccCceEEEEEe
Confidence            688889999999999998753

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.99  E-value=0.19  Score=28.54  Aligned_cols=19  Identities=32%  Similarity=0.641  Sum_probs=16.2

Q ss_pred             ccccccccCChhhHHHHHh
Q 019380           81 CNLCMNIFDSPSSLIKHKE   99 (342)
Q Consensus        81 C~~C~k~F~~~~~L~~H~~   99 (342)
                      |..|+|.|.++.++.+|..
T Consensus         8 C~~C~KrFMWRDSF~RH~~   26 (44)
T d2csha2           8 CNICAKRFMWRDSFHRHVT   26 (44)
T ss_dssp             CSSSCCEESCHHHHHHHHH
T ss_pred             ccchhhhhhhHHHHHHhhh
Confidence            5788889999999999864

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=84.91  E-value=0.26  Score=25.85  Aligned_cols=25  Identities=12%  Similarity=0.094  Sum_probs=22.1

Q ss_pred             cccccccccCChhhHHHHHhhcCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLS  104 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~  104 (342)
                      +-+.|+-.|.....|..|.-.|+|+
T Consensus         7 sf~dC~A~ynk~wkL~AHLckHTGe   31 (31)
T d1tf3a1           7 SFADCGAAYNKNWKLQAHLSKHTGE   31 (31)
T ss_dssp             SSGGGCCEESSHHHHHHHHHHHHCC
T ss_pred             eCCCcchhhccchhhhHHhhhhcCC
Confidence            4588999999999999999999875

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=82.97  E-value=0.35  Score=28.36  Aligned_cols=27  Identities=22%  Similarity=0.579  Sum_probs=22.6

Q ss_pred             cccccccccCChhhHHHHHhhcCCCCC
Q 019380           80 GCNLCMNIFDSPSSLIKHKEACSLSAP  106 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~~h~~~~~  106 (342)
                      .|+.|+-...++-+|++|...-|..+|
T Consensus        26 tcpic~avirqsrnlrrhlel~hf~kp   52 (54)
T d1yuja_          26 TCPICYAVIRQSRNLRRHLELRHFAKP   52 (54)
T ss_dssp             ECTTTCCEESSHHHHHHHHHHHTSCSC
T ss_pred             CCchHHHHHHHHHHHHHHHHHHhhccC
Confidence            489999999999999999987665555

>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor IIIA, TFIIIA
species: Xenopus laevis [TaxId: 8355]

Probab=82.86  E-value=0.33  Score=25.46  Aligned_cols=28  Identities=21%  Similarity=0.436  Sum_probs=23.7

Q ss_pred             Ccccc--cccccccCCHHHHHHHHhhhccCCC
Q 019380           13 ARHKC--VACYKQFKRKDHLIEHMKISYHSVH   42 (342)
Q Consensus        13 ~~~~C--~~C~k~f~~~~~L~~H~~~~~H~~~   42 (342)
                      |.|.|  +.|+..|...-.|+.|.-.  |+++
T Consensus         2 k~~iCsf~dC~A~ynk~wkL~AHLck--HTGe   31 (31)
T d1tf3a1           2 KRYICSFADCGAAYNKNWKLQAHLSK--HTGE   31 (31)
T ss_dssp             CCEECSSGGGCCEESSHHHHHHHHHH--HHCC
T ss_pred             CceEeeCCCcchhhccchhhhHHhhh--hcCC
Confidence            56888  6799999999999999988  7764

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.99  E-value=0.62  Score=23.92  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.0

Q ss_pred             cccccccccccCCHHHHHHHHhh
Q 019380           14 RHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        14 ~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      .|.|..|+|+..+..-++-|+..
T Consensus         2 ~ftc~hcgkqlks~~gmkyhvma   24 (30)
T d2ctda2           2 MFTCHHCGKQLRSLAGMKYHVMA   24 (30)
T ss_dssp             CCCCSSSCCCCSSHHHHHHHHHH
T ss_pred             ceechhHHHHHhhccCceEEEee
Confidence            47899999999999999988765

>d1yuza2 g.41.5.1 (A:167-202) Nigerythrin, C-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Nigerythrin, C-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=81.24  E-value=0.3  Score=27.41  Aligned_cols=27  Identities=26%  Similarity=0.506  Sum_probs=18.7

Q ss_pred             CCCcccccccccccCCHHHHHHHHhhhccCCCCC-ccccCccc
Q 019380           11 STARHKCVACYKQFKRKDHLIEHMKISYHSVHQP-KCAVCQKL   52 (342)
Q Consensus        11 ~~~~~~C~~C~k~f~~~~~L~~H~~~~~H~~~~~-~C~~C~~~   52 (342)
                      +++.|.|+.||..               |.++.| +|+.|+..
T Consensus         2 ~~~~~vC~vCGyi---------------~~g~~Pe~CPvCg~~   29 (36)
T d1yuza2           2 DDKFHLCPICGYI---------------HKGEDFEKCPICFRP   29 (36)
T ss_dssp             SCCEEECSSSCCE---------------EESSCCSBCTTTCCB
T ss_pred             CCCEEECCCCCCE---------------eeCCCCCcCCCCCCc
Confidence            3567889999853               555556 88888743

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=80.22  E-value=0.64  Score=27.20  Aligned_cols=27  Identities=22%  Similarity=0.607  Sum_probs=22.3

Q ss_pred             CCCCcccccccccccCCHHHHHHHHhh
Q 019380           10 RSTARHKCVACYKQFKRKDHLIEHMKI   36 (342)
Q Consensus        10 ~~~~~~~C~~C~k~f~~~~~L~~H~~~   36 (342)
                      ..+.|-.|+.|+....++.+|.+|...
T Consensus        20 ~s~qpatcpic~avirqsrnlrrhlel   46 (54)
T d1yuja_          20 QSEQPATCPICYAVIRQSRNLRRHLEL   46 (54)
T ss_dssp             TTSCCEECTTTCCEESSHHHHHHHHHH
T ss_pred             cccCCCCCchHHHHHHHHHHHHHHHHH
Confidence            456788899999999999999998864

>d1y0jb1 g.37.1.2 (B:1-36) U-shaped transcription factor, different fingers {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: C2HC finger
domain: U-shaped transcription factor, different fingers
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.19  E-value=0.4  Score=25.62  Aligned_cols=20  Identities=40%  Similarity=0.609  Sum_probs=15.7

Q ss_pred             cccccccccCChhhHHHHHh
Q 019380           80 GCNLCMNIFDSPSSLIKHKE   99 (342)
Q Consensus        80 ~C~~C~k~F~~~~~L~~H~~   99 (342)
                      -|..||-.|+..+.|..|+.
T Consensus        10 ~c~pcgirfss~stleahqt   29 (36)
T d1y0jb1          10 MCLPCGIAFSSPSTLEAHQA   29 (36)
T ss_dssp             BCTTTCCBCSCHHHHHHHTT
T ss_pred             eccccceeecChhHHHhhhh
Confidence            37888888888888888874