Citrus Sinensis ID: 019387

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340--
Protein Sequence
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHISTQDRATSCPKLTREWPIYDNSCCIRMSLT
Secondary Structure (PSIPRED)
ccccccccccccccccEEEEEccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHcccccEEEEcccccccHHHHHHcccccccEEEEcccccccccHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccEEEEEcccHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHcccccccccccccccccccHHHHHHHccEEEEEccccHHHHccccHHHHHccccccEEEEccccccccHHHHHHHHHccccccccccccccccccccccccccccccEEEccccccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEccccccEEEEEccccHHHHHHHHHHcccEEEEEccccccccHHHHHHHHHccccEEEEEccccccHHHHHHHHcccccEEEEEccccccEcHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccEccccccEEEEEcccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHEEEEcccccccHHHHHccEEcccHHHHHHHccEEEEcccccccccccEcHHHHccccccEEEEEccccccEcHHHHHHHHHHccEEEEEEcccccccccccccccccccccEEEcccccHcHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpgtrWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAvgynnvdvnaankygiavgntpgvlTETTAELAASLSLAAARRIVEADEFMraglydgwlpnlfvgnllkgqtvgvigagrIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLkangeqpvtwkrASSMDEVLREADvislhpvldkttYHLINKERLATMKKEAILVncsrgpviDEVALVEHlkqnpmfrvglDVFEVTelgfssfkhistqdratscpkltrewpiydnsccirmslt
Flexible Loop (DISEMBL)
makpvsievwnpngkyrvvstkpmpGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFlkangeqpvtwKRASSMDEVLREAdvislhpvldkttYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFssfkhistqdratscpkltrewpiydnsccirmslt
Low Complexity Region (SEG)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVltettaelaaslslaaaRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHISTQDRATSCPKLTREWPIYDNSCCIRMSLT
Disordered region (IsUnstruct)
******IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHISTQDRATSCPKLTREWPIYDNSCCIR****
Disordered Region (DISOPRED)
*****************VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHISTQDRATSCPKLTREWPIYDNSCCIRMSLT
Disordered Region (DISEMBL)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHISTQDRATSCPKLTREWPIYDNSCCIRMSLT
Disordered Region (DISPRO)
**KPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHISTQDRATSCPKLTREWPIYDNSCCIRMSLT
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHISTQDRATSCPKLTREWPIYDNSCCIRMSLT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	342	2.2.26 [Sep-21-2011]
P13443	382	Glycerate dehydrogenase O	N/A	no	0.956	0.856	0.860	1e-160
Q9C9W5	386	Glycerate dehydrogenase H	yes	no	0.956	0.847	0.866	1e-159
A1RYE4	339	Glyoxylate reductase OS=T	yes	no	0.766	0.772	0.378	2e-40
B1L765	332	Glyoxylate reductase OS=K	yes	no	0.754	0.777	0.397	3e-40
Q9YAW4	335	Glyoxylate reductase OS=A	yes	no	0.649	0.662	0.400	4e-40
B6YWH0	334	Glyoxylate reductase OS=T	yes	no	0.769	0.787	0.382	4e-40
Q5JEZ2	333	Glyoxylate reductase OS=P	yes	no	0.716	0.735	0.377	1e-38
Q8U3Y2	336	Glyoxylate reductase OS=P	yes	no	0.640	0.651	0.392	7e-38
Q9C4M5	331	Glyoxylate reductase OS=T	N/A	no	0.646	0.667	0.412	1e-36
A8G7S7	325	Glyoxylate/hydroxypyruvat	yes	no	0.599	0.630	0.393	1e-33

>sp|P13443|DHGY_CUCSA Glycerate dehydrogenase OS=Cucumis sativus GN=HPR-A PE=2 SV=1

 Score =  564 bits (1454), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 284/330 (86%), Positives = 301/330 (91%), Gaps = 3/330 (0%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTT+HL+NKE L  MKK+AIL+NCSRGPVIDE ALV+HL+ NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFE 300

Query: 301 ---VTELGFSSFKHISTQDRATSCPKLTRE 327
                + G +  K+        S  K TRE
Sbjct: 301 DEPYMKPGLADMKNAIIVPHIASASKWTRE 330

Cucumis sativus (taxid: 3659)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q9C9W5|HPR1_ARATH Glycerate dehydrogenase HPR, peroxisomal OS=Arabidopsis thaliana GN=HPR PE=1 SV=1

 Score =  561 bits (1447), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 286/330 (86%), Positives = 302/330 (91%), Gaps = 3/330 (0%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++Q CRVEIC  KKTILSVEDII LIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQGCRVEICHLKKTILSVEDIIDLIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMR GLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRGGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERLA MKKEAILVNCSRGPVIDE ALVEHLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLAMMKKEAILVNCSRGPVIDEAALVEHLKENPMFRVGLDVFE 300

Query: 301 ---VTELGFSSFKHISTQDRATSCPKLTRE 327
                + G +  K+        S  K TRE
Sbjct: 301 EEPFMKPGLADTKNAIVVPHIASASKWTRE 330

Catalyzes the NADH-dependent reduction of hydroxypyruvate into glycerate in the photorespiratory core cycle. Mediates fatty acid beta-oxidation in germinating seeds when malate dehydrogenase is absent.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score =  166 bits (421), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 109/288 (37%), Positives = 160/288 (55%), Gaps = 26/288 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K  V    P PG      ++++ C V +   K    S E+++  I DK D ++  LT+  
Sbjct: 5   KVYVTRIIPEPGLS----MLKECCDVVVHESKDWPPSREELLRNIRDK-DALLCLLTDKI 59

Query: 75  -GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
             E + AA      K  S  +VG++++D+  A K GI V +TPGVLT+  AE    L LA
Sbjct: 60  DAEVMDAA---PNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILA 116

Query: 134 AARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
             RRIVEAD+ +R G +D  W P    G  LKG+T+G++G GRIG A A+ +   F + +
Sbjct: 117 VTRRIVEADKIIRTGQWDKPWNPYFLTGPELKGKTIGLVGLGRIGVATAKRL-SSFDVKI 175

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252
           +YYD+ +   +E  +         N E        + +D +L ++D++S+H  L K TYH
Sbjct: 176 LYYDIERRWDVETVI--------PNME-------FTDLDTLLEKSDIVSIHVPLTKETYH 220

Query: 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           LIN+ERL  MKK A L+N +RGPV+D  ALV+ LK+  +    LDVFE
Sbjct: 221 LINEERLRKMKKTAYLINTARGPVVDTEALVKALKEGWIAGAALDVFE 268

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B1L765|GYAR_KORCO Glyoxylate reductase OS=Korarchaeum cryptofilum (strain OPF8) GN=gyaR PE=3 SV=1

 Score =  166 bits (419), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 116/292 (39%), Positives = 168/292 (57%), Gaps = 34/292 (11%)

Query: 15  KYRVVSTKPMP--GTRWINLLIEQDC-RVEICTQKKTILS-VEDIIALIGDKCDGVIGQL 70
           K RV  T+ +P  G   I    E D  + E    KK I+  V+D        CD ++  L
Sbjct: 2   KPRVFVTREIPERGLSKIEEHFELDLWKDEAPPSKKVIIERVKD--------CDALVSLL 53

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
           T+     +F A  +   +  +  AVGY+N+DV  A K GI V NTPGVLTETTA+ A +L
Sbjct: 54  TDPIDAEVFEAAPKL--RIVAQYAVGYDNIDVKEATKRGIYVTNTPGVLTETTADFAFAL 111

Query: 131 SLAAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFK 189
            +AAARR+VEAD ++R G +   W P + +G  + G+T+G++G GRIG+A AR   +GF 
Sbjct: 112 LMAAARRVVEADRYVREGKWKVAWHPMMMLGYDVYGRTLGIVGMGRIGAAVAR-RAKGFG 170

Query: 190 MNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
           M ++YYD   + R E F    G +++               ++++L E+D +SLH  L +
Sbjct: 171 MRILYYD---SIRREDFEKELGVEYV--------------PLEKLLEESDFVSLHVPLTE 213

Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
            TYH+I +E+L  MK+ AILVN SRG V+D+ AL + LK+  +   GLDVFE
Sbjct: 214 ETYHMIGEEQLRRMKRTAILVNTSRGKVVDQKALYKALKEGWIAGAGLDVFE 265

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9YAW4|GYAR_AERPE Glyoxylate reductase OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=gyaR PE=3 SV=2

 Score =  165 bits (418), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 99/247 (40%), Positives = 142/247 (57%), Gaps = 25/247 (10%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           +  + MAVG++N+DV  A + GI V NTPGVLTE TAE   +L LAAARR+VEAD F+R 
Sbjct: 70  RIVAQMAVGFDNIDVECATRLGIYVTNTPGVLTEATAEFTWALILAAARRVVEADHFVRW 129

Query: 148 G----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G    L  GW P + +G  L+G+T+G++G GRIGS  A +  + F M +IY+   +   +
Sbjct: 130 GEWWRLRTGWHPMMMLGVELRGKTLGILGMGRIGSRVAEIG-KAFGMRIIYHSRSRKREI 188

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
           EK + A                   S++++LRE+D++S+H  L   T HLI +  L  MK
Sbjct: 189 EKELGA----------------EYRSLEDLLRESDILSIHLPLTDETRHLIGESELKLMK 232

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELG----FSSFKHISTQDRAT 319
           K AILVN  RG ++D  ALV+ L++  +    LDVFE   L      ++FK++     A 
Sbjct: 233 KTAILVNTGRGAIVDTGALVKALREGWIAAAALDVFEEEPLNPNHPLTAFKNVVLAPHAA 292

Query: 320 SCPKLTR 326
           S  + TR
Sbjct: 293 SATRETR 299

Aeropyrum pernix (strain ATCC 700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1) (taxid: 272557)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|B6YWH0|GYAR_THEON Glyoxylate reductase OS=Thermococcus onnurineus (strain NA1) GN=gyaR PE=3 SV=1

 Score =  165 bits (418), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 111/290 (38%), Positives = 167/290 (57%), Gaps = 27/290 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V+ T+ +P    I +L E    VE+   +  I S E ++  + D  D ++  L+E  
Sbjct: 2   KPKVLITRKIP-ENGIKMLREH-FEVEVWEDEHEI-SREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   K  +N AVGY+N+D+  A K G+ + NTP VLT  TA++A  L LA 
Sbjct: 58  DAEVFDAAPRL--KIVANYAVGYDNIDIEEATKMGVYITNTPDVLTNATADMAWVLLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR++EAD+F+R+G +      W P +F+G  + G+T+G++G GRIG A AR   +GF M
Sbjct: 116 ARRLIEADKFVRSGEWKKRGVAWHPLMFLGYDVYGRTIGIVGFGRIGQAIARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++Y    +   +EK + A  +F+               +DE+L+E+D + L   L K T
Sbjct: 175 RILYNSRTRKPEVEKELGA--EFM--------------PLDELLKESDFVVLVVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           YH+IN+ERL  MK  AILVN +RG V+D  ALV+ L++  +   GLDVFE
Sbjct: 219 YHMINEERLKLMKPTAILVNIARGKVVDTEALVKALREGWIAGAGLDVFE 268

Thermococcus onnurineus (strain NA1) (taxid: 523850)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q5JEZ2|GYAR_PYRKO Glyoxylate reductase OS=Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) GN=gyaR PE=3 SV=1

 Score =  160 bits (404), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 102/270 (37%), Positives = 155/270 (57%), Gaps = 25/270 (9%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++++   VE+  +++ I   E ++  + D  D ++  L+E     +F A  R   +  +N
Sbjct: 18  MLKEHFEVEVWPEEREI-PREVLLKKVRD-VDALVTMLSERIDSEVFDAAPRL--RIVAN 73

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD- 151
            AVGY+N+DV  A + GI V NTP VLT+ TA+ A +L LA ARR++EAD F R+G +  
Sbjct: 74  YAVGYDNIDVEEATRRGIYVTNTPDVLTDATADFAWTLLLATARRLIEADHFTRSGEWKR 133

Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G++G GRIG A AR    GF M ++YY   +    EK + 
Sbjct: 134 RGIAWHPRWFLGYDVYGKTIGIVGFGRIGQAVAR-RARGFGMRILYYSRSRKPEAEKELG 192

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
           A  +F               S++++LRE+D + L   L K T ++IN+ERL  MKK AIL
Sbjct: 193 A--EF--------------RSLEDLLRESDFVVLAVPLTKETQYMINEERLRLMKKTAIL 236

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
           VN +RG V+D  AL++ LK+  +   GLDV
Sbjct: 237 VNIARGKVVDTKALMKALKEGWIAGAGLDV 266

Pyrococcus kodakaraensis (strain ATCC BAA-918 / JCM 12380 / KOD1) (taxid: 69014)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q8U3Y2|GYAR_PYRFU Glyoxylate reductase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=gyaR PE=3 SV=1

 Score =  158 bits (399), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 95/242 (39%), Positives = 139/242 (57%), Gaps = 23/242 (9%)

Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTET 122
            D ++  L+E   + +F    R   +  +N AVGY+N+DV  A + GI V NTP VLT  
Sbjct: 46  VDALVTMLSERIDQEVFENAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPDVLTNA 103

Query: 123 TAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           TA+ A +L LA AR +V+ D+F+R+G +      W P  F+G  L G+T+G++G GRIG 
Sbjct: 104 TADHAFALLLATARHVVKGDKFVRSGEWKRKGIAWHPKWFLGYELYGKTIGIVGFGRIGQ 163

Query: 179 AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238
           A AR   +GF M ++YY   + ++ EK + A                    ++EVL+E+D
Sbjct: 164 AIARR-AKGFNMRILYYSRTRKSQAEKELGA----------------EYRPLEEVLKESD 206

Query: 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
            + L   L K T ++IN+ERL  MK  AILVN +RG V+D  AL++ LK+  +   GLDV
Sbjct: 207 FVILAVPLTKETMYMINEERLKLMKPTAILVNIARGKVVDTKALIKALKEGWIAGAGLDV 266

Query: 299 FE 300
           FE
Sbjct: 267 FE 268

Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) (taxid: 186497)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|Q9C4M5|GYAR_THELI Glyoxylate reductase OS=Thermococcus litoralis GN=gyaR PE=1 SV=1

 Score =  154 bits (389), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 106/257 (41%), Positives = 149/257 (57%), Gaps = 36/257 (14%)

Query: 49  ILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY 108
           +  V+ ++ L+ DK D    +L E+  +           K  +  AVGY+N+D+  A K 
Sbjct: 43  VREVDALVTLVTDKVDK---ELLENAPKL----------KIIAQYAVGYDNIDIEEATKR 89

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLK 164
           GI V NTPGVLT+ TA+LA +L LA ARRIVEAD F+R+G +     GW P +F+G  LK
Sbjct: 90  GIYVTNTPGVLTDATADLAFALLLAVARRIVEADAFVRSGEWKKSEVGWHPLMFLGYGLK 149

Query: 165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVT 223
           G+T+G++G GRIG A A+   +GF M +IYY   +    E+ + A Y  F          
Sbjct: 150 GKTLGIVGFGRIGQALAK-RAKGFGMKIIYYSRTRKPEAEEEIGAEYVDF---------- 198

Query: 224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV 283
                  + +L+E+D ISLH  L K TYH+I ++ L  MK  AIL+N SRG V+D  AL+
Sbjct: 199 -------ETLLKESDFISLHVPLTKETYHMIGEKELKLMKPNAILINTSRGAVVDTNALI 251

Query: 284 EHLKQNPMFRVGLDVFE 300
           + LK+  +   GLDVFE
Sbjct: 252 KALKEGWIAGAGLDVFE 268

Thermococcus litoralis (taxid: 2265)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|A8G7S7|GHRB_SERP5 Glyoxylate/hydroxypyruvate reductase B OS=Serratia proteamaculans (strain 568) GN=ghrB PE=3 SV=1

 Score =  144 bits (362), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/221 (39%), Positives = 127/221 (57%), Gaps = 16/221 (7%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           +A S ++VGY+N DV+A N + + + +TP VLTET A+   SL LA ARR+VE  E ++A
Sbjct: 68  RAASTISVGYDNFDVDALNAHNVLLMHTPTVLTETVADTIMSLVLATARRVVEVAERVKA 127

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G + G +   + G  +  +T+G++G GRIG A A+    GF M +    LY A R  +  
Sbjct: 128 GEWQGSIGADWFGVDVHHKTIGILGMGRIGLALAQRAHFGFGMPV----LYNARRTHE-- 181

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
                      EQ    +R   +D +L E+D I +   L   T+H+I++++LA MKK  I
Sbjct: 182 ---------EAEQRFNARRC-DLDTLLAESDFICITLPLTDETFHMISRDQLAKMKKSGI 231

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFSS 308
           L+N  RGPV+DE AL+E L+   +   GLDVFE   L  SS
Sbjct: 232 LINAGRGPVVDEAALIEALQNGTIHAAGLDVFEKEPLPVSS 272

Catalyzes the NADPH-dependent reduction of glyoxylate and hydroxypyruvate into glycolate and glycerate, respectively.

Serratia proteamaculans (strain 568) (taxid: 399741)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
255581842	386	hydroxypyruvate reductase, putative [Ric	0.956	0.847	0.903	1e-163
118489484	386	unknown [Populus trichocarpa x Populus d	0.956	0.847	0.890	1e-163
224078341	386	predicted protein [Populus trichocarpa]	0.956	0.847	0.887	1e-163
225428049	386	PREDICTED: glycerate dehydrogenase [Viti	0.956	0.847	0.872	1e-162
13873334	386	hydroxypyruvate reductase [Bruguiera gym	0.956	0.847	0.881	1e-162
147805559	386	hypothetical protein VITISV_020147 [Viti	0.956	0.847	0.872	1e-162
388493492	388	unknown [Lotus japonicus]	0.956	0.842	0.866	1e-160
449454213	382	PREDICTED: glycerate dehydrogenase-like	0.956	0.856	0.860	1e-158
388506608	386	unknown [Medicago truncatula]	0.956	0.847	0.854	1e-158
118723307	386	hydroxypyruvate reductase [Solenostemon	0.956	0.847	0.863	1e-158

>gi|255581842|ref|XP_002531721.1| hydroxypyruvate reductase, putative [Ricinus communis] gi|223528624|gb|EEF30641.1| hydroxypyruvate reductase, putative [Ricinus communis]

 Score =  582 bits (1499), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 298/330 (90%), Positives = 305/330 (92%), Gaps = 3/330 (0%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQATRLEKFVTAYG FL+ANGEQPVTWKRASSMDEVLR ADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQATRLEKFVTAYGAFLQANGEQPVTWKRASSMDEVLRVADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKE LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKESLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 ---VTELGFSSFKHISTQDRATSCPKLTRE 327
                + G +  K+        S  K TRE
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTRE 330

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489484|gb|ABK96544.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  580 bits (1496), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 294/330 (89%), Positives = 308/330 (93%), Gaps = 3/330 (0%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHLINKE LATMKKEAILVNCSRGPV+DEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLINKESLATMKKEAILVNCSRGPVVDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 ---VTELGFSSFKHISTQDRATSCPKLTRE 327
                + G +  K+        S  K TRE
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTRE 330

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078341|ref|XP_002305524.1| predicted protein [Populus trichocarpa] gi|222848488|gb|EEE86035.1| predicted protein [Populus trichocarpa]

 Score =  579 bits (1492), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 293/330 (88%), Positives = 308/330 (93%), Gaps = 3/330 (0%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+SIEV+NPNGKYRVVSTK MPGTRWINLLIEQDCRVEICTQ+KTILSVEDIIALIG
Sbjct: 1   MAKPISIEVYNPNGKYRVVSTKSMPGTRWINLLIEQDCRVEICTQQKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEAD+FMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADQFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYG+FLKANGEQPVTWKRA+SMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGEFLKANGEQPVTWKRAASMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHLINKE LATMKKEAILVNCSRGPV+DEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLINKESLATMKKEAILVNCSRGPVVDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 ---VTELGFSSFKHISTQDRATSCPKLTRE 327
                + G +  K+        S  K TRE
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTRE 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428049|ref|XP_002279281.1| PREDICTED: glycerate dehydrogenase [Vitis vinifera] gi|297744600|emb|CBI37862.3| unnamed protein product [Vitis vinifera]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 288/330 (87%), Positives = 307/330 (93%), Gaps = 3/330 (0%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERL+ MKKEAIL+NCSRGPVIDEVALV HLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFE 300

Query: 301 ---VTELGFSSFKHISTQDRATSCPKLTRE 327
                + G +  K+        S  K TRE
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTRE 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13873334|dbj|BAB44155.1| hydroxypyruvate reductase [Bruguiera gymnorhiza]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 291/330 (88%), Positives = 308/330 (93%), Gaps = 3/330 (0%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP G+YRVVSTKPMPGTRWINLL++QDCR+EICT+KKTILSVEDIIAL+G
Sbjct: 1   MAKPVSIEVWNPRGRYRVVSTKPMPGTRWINLLVQQDCRLEICTEKKTILSVEDIIALMG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLFAALS+AGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFAALSKAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA++MDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAATMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKE LA+MKKEA+LVNCSRGPVIDEVALVEHL++NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKESLASMKKEAVLVNCSRGPVIDEVALVEHLRRNPMFRVGLDVFE 300

Query: 301 ---VTELGFSSFKHISTQDRATSCPKLTRE 327
                + G +  K+        S  K TRE
Sbjct: 301 DEPYMKPGLADMKNAIVVPHIASASKWTRE 330

Source: Bruguiera gymnorhiza

Species: Bruguiera gymnorhiza

Genus: Bruguiera

Family: Rhizophoraceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805559|emb|CAN65023.1| hypothetical protein VITISV_020147 [Vitis vinifera]

 Score =  578 bits (1489), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 288/330 (87%), Positives = 307/330 (93%), Gaps = 3/330 (0%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP GKYRVVSTKPMPGTRWI+LL++QDCRVEICTQKKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPCGKYRVVSTKPMPGTRWIDLLVQQDCRVEICTQKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALSRAGG+AFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSRAGGRAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLS+AAARRIVEADEFMRAGLYDGWLP+LFVGNLL+GQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSMAAARRIVEADEFMRAGLYDGWLPHLFVGNLLRGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA+GEQPVTWKRA+SMDEVLREAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKASGEQPVTWKRAASMDEVLREADLI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERL+ MKKEAIL+NCSRGPVIDEVALV HLK+NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLSMMKKEAILINCSRGPVIDEVALVAHLKENPMFRVGLDVFE 300

Query: 301 ---VTELGFSSFKHISTQDRATSCPKLTRE 327
                + G +  K+        S  K TRE
Sbjct: 301 DEPYMKPGLAEMKNAIVVPHIASASKWTRE 330

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388493492|gb|AFK34812.1| unknown [Lotus japonicus]

 Score =  570 bits (1470), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 286/330 (86%), Positives = 304/330 (92%), Gaps = 3/330 (0%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEVWNP+GKYRVVSTKPMPGTRWINLLI+QDCR+EICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVWNPSGKYRVVSTKPMPGTRWINLLIQQDCRLEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           +KCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  EKCDGVIGQLTEDWGEELFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAY  FLKANGE PVTWKRASSMDEVL+EAD+I
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYAAFLKANGETPVTWKRASSMDEVLQEADII 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHL+NKERLA MKKEAILVNCSRGPVIDE ALVEHL+QNPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLVNKERLAKMKKEAILVNCSRGPVIDEAALVEHLRQNPMFRVGLDVFE 300

Query: 301 ---VTELGFSSFKHISTQDRATSCPKLTRE 327
                + G +  K+        S  K TRE
Sbjct: 301 EEPYMKPGLAELKNAIVVPHIASASKWTRE 330

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454213|ref|XP_004144850.1| PREDICTED: glycerate dehydrogenase-like [Cucumis sativus] gi|449508825|ref|XP_004163421.1| PREDICTED: glycerate dehydrogenase-like [Cucumis sativus] gi|118564|sp|P13443.1|DHGY_CUCSA RecName: Full=Glycerate dehydrogenase; Short=GDH; AltName: Full=NADH-dependent hydroxypyruvate reductase; Short=HPR gi|18264|emb|CAA41434.1| NADH-dependent hydroxypyruvate reductase [Cucumis sativus] gi|18275|emb|CAA32764.1| unnamed protein product [Cucumis sativus]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/330 (86%), Positives = 301/330 (91%), Gaps = 3/330 (0%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPV IEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICT+KKTILSVEDI+ALIG
Sbjct: 1   MAKPVQIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTEKKTILSVEDILALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALSRAGGKAFSNMAVGYNNVDVNAANKYG+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEVLFSALSRAGGKAFSNMAVGYNNVDVNAANKYGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAG YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGRYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG+FLKANGE PVTW+RASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGEFLKANGEAPVTWRRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTT+HL+NKE L  MKK+AIL+NCSRGPVIDE ALV+HL+ NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTFHLVNKESLKAMKKDAILINCSRGPVIDEAALVDHLRDNPMFRVGLDVFE 300

Query: 301 ---VTELGFSSFKHISTQDRATSCPKLTRE 327
                + G +  K+        S  K TRE
Sbjct: 301 DEPYMKPGLADMKNAIIVPHIASASKWTRE 330

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506608|gb|AFK41370.1| unknown [Medicago truncatula]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 282/330 (85%), Positives = 304/330 (92%), Gaps = 3/330 (0%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSI+VWNPNGKYRVVSTK MPGTRWINLLI+QDCR+EICT+KKTILSVED IALIG
Sbjct: 1   MAKPVSIQVWNPNGKYRVVSTKSMPGTRWINLLIQQDCRLEICTEKKTILSVEDTIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGE LF+ALS+AGGKAFSNMAVGYNNVDVNAANK+G+AVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGEELFSALSKAGGKAFSNMAVGYNNVDVNAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASL+LAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLTLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIY+DLYQ+TRLEKFVTAYG FLKANGE PVTWKRA+SMDEVL+EAD+I
Sbjct: 181 ARMMVEGFKMNLIYFDLYQSTRLEKFVTAYGAFLKANGETPVTWKRAASMDEVLQEADII 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHP+LDKTTYHL+NKERLA MKKEAIL+NCSRGPVIDEVALVEHLK+NPMFRVGLDVFE
Sbjct: 241 SLHPILDKTTYHLVNKERLAKMKKEAILINCSRGPVIDEVALVEHLKENPMFRVGLDVFE 300

Query: 301 ---VTELGFSSFKHISTQDRATSCPKLTRE 327
                + G +  K+        S  K TRE
Sbjct: 301 DEPYMKPGLAELKNAVVVPHIASASKWTRE 330

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118723307|gb|ABL10359.1| hydroxypyruvate reductase [Solenostemon scutellarioides]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 285/330 (86%), Positives = 304/330 (92%), Gaps = 3/330 (0%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKP+ +EV+NPNGKYRVVSTK MPGTRWINLL++QDCR+EICT+KKTILSVEDII+LIG
Sbjct: 1   MAKPLQVEVYNPNGKYRVVSTKSMPGTRWINLLVDQDCRLEICTEKKTILSVEDIISLIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           +KCDGVIGQLTEDWGE LF+ALSRAGG AFSNMAVGYNNVDV+AANK+G+AVGNTPGVLT
Sbjct: 61  NKCDGVIGQLTEDWGEKLFSALSRAGGTAFSNMAVGYNNVDVDAANKHGVAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQFL+ANGEQPVTWKRASSMDEVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLQANGEQPVTWKRASSMDEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHL+NKERLA MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLVNKERLAKMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300

Query: 301 ---VTELGFSSFKHISTQDRATSCPKLTRE 327
                + G    K+        S  K TRE
Sbjct: 301 DEPYMKPGLEKMKNAIIVPHIASASKWTRE 330

Source: Solenostemon scutellarioides

Species: Solenostemon scutellarioides

Genus: Solenostemon

Family: Lamiaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	342
UNIPROTKB|Q0BWN7	328	gyaR "Glyoxylate reductase" [H	0.777	0.810	0.315	1e-29
TIGR_CMR|BA_1434	323	BA_1434 "D-isomer specific 2-h	0.464	0.492	0.337	2.4e-29
UNIPROTKB|Q48MK5	324	PSPPH_1099 "D-isomer specific	0.567	0.598	0.347	6.6e-26
UNIPROTKB|Q4KI01	324	ghrB2 "Glyoxylate/hydroxypyruv	0.587	0.620	0.350	2.9e-25
TIGR_CMR|SPO_1570	330	SPO_1570 "D-isomer specific 2-	0.783	0.812	0.283	3.6e-25
TIGR_CMR|SPO_0913	317	SPO_0913 "D-isomer specific 2-	0.508	0.548	0.297	5.5e-25
TIGR_CMR|SPO_0632	328	SPO_0632 "D-isomer specific 2-	0.780	0.814	0.298	7.6e-25
TIGR_CMR|BA_5135	330	BA_5135 "D-isomer specific 2-h	0.760	0.787	0.282	1.6e-24
UNIPROTKB|G4NFT6	349	MGG_08725 "D-lactate dehydroge	0.418	0.409	0.312	1.9e-24
UNIPROTKB|P37666	324	ghrB "GhrB" [Escherichia coli	0.599	0.632	0.339	6.1e-23

UNIPROTKB|Q0BWN7 gyaR "Glyoxylate reductase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 92/292 (31%), Positives = 141/292 (48%)

Query:    12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT 71
             P  K +VV T+ +P    + +    D R+    +     SVE++   +    D ++  +T
Sbjct:     2 PASKLKVVVTRKLPAPVELRMKELFDARLN---ESDRPFSVEELAQAM-QTADVLVPTVT 57

Query:    72 EDWGETLFAALSRAGG--KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXX 129
             +     L A   RAG   +  +    G +N+DV +A + GI V NTPGV           
Sbjct:    58 DKIDGRLMA---RAGDQLRLIAQFGAGVDNIDVASAVQRGITVTNTPGVLTDDTADVAMA 114

Query:   130 XXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFK 189
                   RR+ E  + M AG +DGW P   +G  L G+ +G+IG GRIG A AR     F 
Sbjct:   115 LILAVPRRMHEGVQIMEAGKFDGWTPTWMMGRRLSGKRLGIIGMGRIGQAVARR-ARAFG 173

Query:   190 MNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
             M + Y++    ++R+E+ + A              W    S+D++L   D++S++     
Sbjct:   174 MQIHYHNRKPVSSRIEESLEA------------TYW---DSLDQMLARMDIVSINCPHTP 218

Query:   249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
              T+HLIN  RL  MK EA ++N +RG VIDE AL   ++   +   GLDVFE
Sbjct:   219 ATFHLINARRLGLMKPEAYIINTARGEVIDEAALARAIRAGKIAGAGLDVFE 270

GO:0046487 "glyoxylate metabolic process" evidence=ISS

GO:0047964 "glyoxylate reductase activity" evidence=ISS

TIGR_CMR|BA_1434 BA_1434 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 219 (82.2 bits), Expect = 2.4e-29, Sum P(2) = 2.4e-29
 Identities = 56/166 (33%), Positives = 86/166 (51%)

Query:    30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL-TEDWGETLFAALSRAGGK 88
             I L + +D  VE+   K+ ++S++++   + DK D ++  L T+   E + AA S    K
Sbjct:    13 IGLELLKDHDVEMY-DKEELISLDELTERVKDK-DALLSLLSTKVTKEVIDAAPSL---K 67

Query:    89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
               +N   GY+N+D   A + GIAV NTP V                 RRI E D   R  
Sbjct:    68 IVANYGAGYDNIDYTYAGEKGIAVTNTPKVSTEATAELTFALLLAAARRIPEGDTLCRTT 127

Query:   149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
              ++GW P  F+G  + G+T+G+IG G IG A A+   + F MN++Y
Sbjct:   128 GFNGWAPLFFLGREVHGKTIGIIGLGEIGKAVAKR-AKAFGMNILY 172

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|Q48MK5 PSPPH_1099 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Pseudomonas syringae pv. phaseolicola 1448A (taxid:264730)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 73/210 (34%), Positives = 112/210 (53%)

Query:    91 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLY 150
             S+++VGY+N DV+  ++ GI + NTP V                 RR+ E D + +AG +
Sbjct:    71 SSISVGYDNYDVDYLSERGILLTNTPDVLTESTADLGFSLIMSSARRVAELDAYTKAGQW 130

Query:   151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
                +     G  + G+T+G++G G IG+A AR    GF M ++Y    + T LE+ + A 
Sbjct:   131 TRSIEPPHFGTDVHGKTLGIVGMGNIGAAIARRGRLGFNMPILYSGNSRKTELEQELGA- 189

Query:   211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              QF               S+D++L EAD + L   L + T HLI +  L+ MK  AIL+N
Sbjct:   190 -QF--------------RSLDQLLAEADFVCLVVPLSEKTKHLIGRRELSLMKPGAILIN 234

Query:   271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
              +RGP++DE AL+E L+   +   GLDV+E
Sbjct:   235 IARGPIVDEPALIEALQNGTIRGAGLDVYE 264

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q4KI01 ghrB2 "Glyoxylate/hydroxypyruvate reductase B" [Pseudomonas protegens Pf-5 (taxid:220664)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 76/217 (35%), Positives = 113/217 (52%)

Query:    91 SNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLY 150
             S+++VGY+N D+   N+ G+ + NTP V                 RR+ E D + +AG +
Sbjct:    71 SSISVGYDNYDLAYFNERGLMLTNTPDVLTESTADLAFALLMSSARRVAELDAWTKAGQW 130

Query:   151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
                +     G  + G+T+G++G G IG+A AR    GF M ++Y    +   LE+ + A 
Sbjct:   131 QASVGPALFGCDVHGKTLGIVGMGNIGAAIARRGRLGFGMPILYSGNSRKAALEQELGA- 189

Query:   211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
              QF               S++++L EAD + L   L + T HLI+   LA MK  AILVN
Sbjct:   190 -QF--------------RSLEQLLAEADFVCLVVPLSEKTKHLISHRELALMKPSAILVN 234

Query:   271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFS 307
              SRGPV+DE AL+E L++  +   GLDV+E   L  S
Sbjct:   235 ISRGPVVDEPALIEALQKGQIRGAGLDVYEKEPLAES 271

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=ISS

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISS

GO:0019521 "D-gluconate metabolic process" evidence=ISS

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISS

TIGR_CMR|SPO_1570 SPO_1570 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 82/289 (28%), Positives = 133/289 (46%)

Query:    13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE 72
             N K RV+ T+  P    +   + +    +       + S E   AL   + D ++  +T+
Sbjct:     8 NSKPRVLVTRRWPAA--VEAQLAERFDTQFNRTDTPLTSAEFRSALA--RFDAILPTVTD 63

Query:    73 DWG-ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXX 131
               G E L     +   +  +N  VGY+++D +A   +GI V NTP V             
Sbjct:    64 KLGAEALDVTAPQT--RLLANYGVGYSHIDSDAVRAHGITVSNTPDVLSECTADIAMTLM 121

Query:   132 XXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
                 RR  E +  +RAG + GW P   VG+ + G+ +G++G GRIG A A+    GF M 
Sbjct:   122 LMVARRAGEGERELRAGQWTGWRPTHLVGSKVSGKVLGIVGFGRIGQAMAQRAHHGFGMK 181

Query:   192 LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251
             ++  +  ++   +  +  YG              +  ++D +L + D +SLH        
Sbjct:   182 ILVQN--RSAVPQDVLDRYGA------------TQVETLDAMLPQCDFVSLHCPGGAANR 227

Query:   252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
             HLIN  RL  MK +A L+N +RG V+DE AL + L  + +    LDVF+
Sbjct:   228 HLINSRRLDLMKPDAFLINTARGEVVDEHALAQALMFDCIGGAALDVFD 276

GO:0008152 "metabolic process" evidence=ISS

GO:0050578 "(R)-2-hydroxyacid dehydrogenase activity" evidence=ISS

TIGR_CMR|SPO_0913 SPO_0913 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 210 (79.0 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
 Identities = 53/178 (29%), Positives = 84/178 (47%)

Query:    17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
             +++  +PM  T  +      +   EI T    +   E + AL   + D V+  L + +  
Sbjct:     2 KLLIARPM--TAAVEARARAEFETEIRTSTTPLSEAEMLRAL--REFDIVMPTLGDMFSA 57

Query:    77 TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
              +FA +     +  +N  VGYN++ V AA   G+AV NTPG                  R
Sbjct:    58 DVFAQVPEPRCRLLANFGVGYNHIAVAAARAAGVAVTNTPGAVTDATADIAMTLLLMTAR 117

Query:   137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
             R  E +  +R+G ++GW P   +G+ + G+ VG++G GRIG A AR    GF M + Y
Sbjct:   118 RAGEGERLVRSGAWEGWHPTQMLGHHVTGKHVGIVGLGRIGQAIARRCHFGFGMQVSY 175

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|SPO_0632 SPO_0632 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 87/291 (29%), Positives = 138/291 (47%)

Query:    12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT 71
             P  +  VV T+ +P    +   + +   V +     T +S +++ A + +  D ++  L 
Sbjct:     2 PRERLSVVVTRRLPEV--VETRLSELFNVRL-RDDDTPMSRDELAAALRE-ADVLVPTLN 57

Query:    72 EDWGETLFAALSRAGGKA--FSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXX 129
             +     L   L++AG +    +N   G +++DV  A + GI V NTPGV           
Sbjct:    58 DRIDAGL---LAQAGERMRLIANYGAGVDHIDVATARQRGILVSNTPGVLTDDTADMTMA 114

Query:   130 XXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFK 189
                   RRI E    M+   + GW P   +G  + G+ +G++G GRIG A AR     F 
Sbjct:   115 LILAVTRRIPEGLAVMQKNEWTGWAPTALLGGRVGGRRLGILGMGRIGQAVARR-ASAFG 173

Query:   190 MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT 249
             M + Y++     RL   V      L+A      TW    S+D+++   DVIS++     +
Sbjct:   174 MQIHYHN---RRRLRPEVE---DALEA------TWW--DSLDQMIARMDVISVNCPSTPS 219

Query:   250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
             T+HL+N  RL  MK   ++VN SRG VIDE AL   ++   +   GLDV+E
Sbjct:   220 TFHLMNARRLKLMKPTGVIVNTSRGEVIDENALTRMIRTGEIAGAGLDVYE 270

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

TIGR_CMR|BA_5135 BA_5135 "D-isomer specific 2-hydroxyacid dehydrogenase family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 81/287 (28%), Positives = 137/287 (47%)

Query:    15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             K +V   +P+P   ++   + + C  E   Q + +   + ++  I DK DG++       
Sbjct:    12 KPKVYIAEPVP--TFVENYLSEHCDYEKWEQNEKVPR-DVLLEKIQDK-DGLLN-FGSAI 66

Query:    75 GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXX 134
              E L  A      K  SN++VGY+N D+ A  K+ +   NTP V                
Sbjct:    67 NEELLEAAPNL--KVVSNISVGYDNFDLQAMAKHNVIGTNTPYVLDDTVADLVFALMLSA 124

Query:   135 XRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
              RR+ E D +++ G ++  +     G  +   T+G+IG GRIG A A+    GF M+++Y
Sbjct:   125 GRRVCELDSYVKNGEWNAEIGKEHFGLDVHHSTIGIIGMGRIGEAVAKRAKFGFDMDVLY 184

Query:   195 YDLYQATRLE-KFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYH 252
             Y+  +    E KF   Y                   +  +L+++D ++ L P+ D+T YH
Sbjct:   185 YNRRRKEEAEQKFDATY-----------------CDLQTLLKQSDFIVLLTPLTDET-YH 226

Query:   253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
             LI ++  + MK+ AI +N SRG  +DE AL++ L +  +F  G+D F
Sbjct:   227 LIGEKEFSFMKETAIFINASRGKTVDEEALIDALTEKKIFAAGIDTF 273

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=ISS

UNIPROTKB|G4NFT6 MGG_08725 "D-lactate dehydrogenase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 177 (67.4 bits), Expect = 1.9e-24, Sum P(2) = 1.9e-24
 Identities = 46/147 (31%), Positives = 71/147 (48%)

Query:    64 DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXX 123
             + V   + ++    +   LS  G         G+NNVD++ A++ G++V N P       
Sbjct:    50 EAVCAFVNDNLSRPVLEGLSDLGVTTILLRCAGFNNVDLDCASQLGLSVANVPSYSPEAV 109

Query:   124 XXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 183
                         R+   A   +R G ++  L  L +G  L G+TVGV+G GRIG A+AR+
Sbjct:   110 GEFAVALLQTVNRKTHRAYNRVREGNFN--LDGL-LGRTLHGKTVGVVGTGRIGIAFARI 166

Query:   184 MVEGFKMNLIYYDLYQATRLEKFVTAY 210
             MV GF   L+ YD+YQ   + K   +Y
Sbjct:   167 MV-GFGCKLLAYDVYQNEEVGKLGGSY 192

GO:0005575 "cellular_component" evidence=ND

GO:0043581 "mycelium development" evidence=IEP

UNIPROTKB|P37666 ghrB "GhrB" [Escherichia coli K-12 (taxid:83333)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 75/221 (33%), Positives = 109/221 (49%)

Query:    88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
             +A S ++VGY+N DV+A     I + +TP V                 RR+VE  E ++A
Sbjct:    68 RATSTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKA 127

Query:   148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
             G +   +   + G  +  +T+G++G GRIG A A+    GF M +    LY A R  K  
Sbjct:   128 GEWTASIGPDWYGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPI----LYNARRHHK-- 181

Query:   208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              A  +F   N        R   +D +L+E+D + L   L   T+HL   E+ A MK  AI
Sbjct:   182 EAEERF---NA-------RYCDLDTLLQESDFVCLILPLTDETHHLFGAEQFAKMKSSAI 231

Query:   268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFSS 308
              +N  RGPV+DE AL+  L++  +   GLDVFE   L   S
Sbjct:   232 FINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDS 272

GO:0051287 "NAD binding" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046181 "ketogluconate catabolic process" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0019521 "D-gluconate metabolic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0008873 "gluconate 2-dehydrogenase activity" evidence=IEA;IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9C9W5	HPR1_ARATH	1, ., 1, ., 1, ., 2, 9	0.8666	0.9561	0.8471	yes	no
P13443	DHGY_CUCSA	1, ., 1, ., 1, ., 2, 9	0.8606	0.9561	0.8560	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	1.1.1	0.983
4th Layer	1.1.1.29	0.979

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	342
PLN02306	386	PLN02306, PLN02306, hydroxypyruvate reductase	0.0
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	1e-112
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	2e-72
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	7e-71
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	5e-70
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	8e-69
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	2e-67
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	1e-63
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	3e-63
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	1e-58
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	1e-55
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	4e-55
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	7e-55
pfam02826	175	pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro	3e-54
PRK13581	526	PRK13581, PRK13581, D-3-phosphoglycerate dehydroge	1e-53
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	6e-52
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	3e-51
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	2e-50
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	6e-49
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	1e-48
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	2e-48
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	6e-48
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	2e-47
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	2e-46
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	9e-46
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	7e-45
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	3e-44
PRK15409	323	PRK15409, PRK15409, bifunctional glyoxylate/hydrox	6e-44
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	8e-44
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	2e-43
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	4e-43
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	3e-38
cd12167	330	cd12167, 2-Hacid_dh_8, Putative D-isomer specific	1e-35
cd12176	304	cd12176, PGDH_3, Phosphoglycerate dehydrogenases,	8e-35
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	2e-33
PRK08410	311	PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P	3e-33
cd12158	343	cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh	7e-33
PRK11790	409	PRK11790, PRK11790, D-3-phosphoglycerate dehydroge	3e-29
PRK08605	332	PRK08605, PRK08605, D-lactate dehydrogenase; Valid	6e-29
cd12179	306	cd12179, 2-Hacid_dh_14, Putative D-isomer specific	6e-28
PRK06487	317	PRK06487, PRK06487, glycerate dehydrogenase; Provi	1e-27
PRK06932	314	PRK06932, PRK06932, glycerate dehydrogenase; Provi	3e-27
PRK12480	330	PRK12480, PRK12480, D-lactate dehydrogenase; Provi	3e-26
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	1e-23
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	2e-23
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	5e-23
cd12159	303	cd12159, 2-Hacid_dh_2, Putative D-isomer specific	1e-22
PLN02928	347	PLN02928, PLN02928, oxidoreductase family protein	8e-22
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	2e-21
PRK00257	381	PRK00257, PRK00257, erythronate-4-phosphate dehydr	4e-21
cd12166	300	cd12166, 2-Hacid_dh_7, Putative D-isomer specific	4e-19
PLN03139	386	PLN03139, PLN03139, formate dehydrogenase; Provisi	1e-15
PRK06436	303	PRK06436, PRK06436, glycerate dehydrogenase; Provi	5e-14
cd12154	310	cd12154, FDH_GDH_like, Formate/glycerate dehydroge	6e-13
PRK15438	378	PRK15438, PRK15438, erythronate-4-phosphate dehydr	5e-12
cd12180	308	cd12180, 2-Hacid_dh_15, Putative D-isomer specific	6e-12
cd12164	306	cd12164, GDH_like_2, Putative glycerate dehydrogen	8e-12
cd12160	310	cd12160, 2-Hacid_dh_3, Putative D-isomer specific	1e-11
cd12163	334	cd12163, 2-Hacid_dh_5, Putative D-isomer specific	4e-10
cd12170	294	cd12170, 2-Hacid_dh_9, Putative D-isomer specific	1e-06
cd01620	317	cd01620, Ala_dh_like, Alanine dehydrogenase and re	7e-06

>gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase

 Score =  648 bits (1674), Expect = 0.0
 Identities = 292/330 (88%), Positives = 306/330 (92%), Gaps = 3/330 (0%)

Query: 1   MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG 60
           MAKPVSIEV+NPNGKYRVVSTKPMPGTRWINLL++QDCRVEICT+KKTILSVEDIIALIG
Sbjct: 1   MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIG 60

Query: 61  DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLT 120
           DKCDGVIGQLTEDWGETLF+ALS+AGGKAFSNMAVGYNNVDV AANKYGIAVGNTPGVLT
Sbjct: 61  DKCDGVIGQLTEDWGETLFSALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLT 120

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           ETTAELAASLSLAAARRIVEADEFMRAGLY+GWLP+LFVGNLLKGQTVGVIGAGRIGSAY
Sbjct: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIGSAY 180

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
           ARMMVEGFKMNLIYYDLYQ+TRLEKFVTAYGQFLKANGEQPVTWKRASSM+EVLREADVI
Sbjct: 181 ARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI 240

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLHPVLDKTTYHLINKERLA MKKEA+LVN SRGPVIDEVALVEHLK NPMFRVGLDVFE
Sbjct: 241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFE 300

Query: 301 ---VTELGFSSFKHISTQDRATSCPKLTRE 327
                + G +  K+        S  K TRE
Sbjct: 301 DEPYMKPGLADMKNAVVVPHIASASKWTRE 330

Length = 386

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score =  327 bits (841), Expect = e-112
 Identities = 116/285 (40%), Positives = 162/285 (56%), Gaps = 23/285 (8%)

Query: 16  YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWG 75
            +V+ T+ +P    + LL  +   VE+   +   L  E+++       DG++  LT+   
Sbjct: 1   PKVLVTRRLPE-EALALL-REGFEVEVW-DEDRPLPREELLEAAKG-ADGLLCTLTDKID 56

Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAA 135
             L  A      K  +N +VGY+++DV+AA   GI V NTP VLT+ TA+LA +L LAAA
Sbjct: 57  AELLDAAPPL--KVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAA 114

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE D F+RAG + GW P L +G  L G+T+G++G GRIG A AR    GF M ++Y+
Sbjct: 115 RRVVEGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAK-GFGMKILYH 173

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
           +  +    E+ + A                   S+DE+L E+D +SLH  L   T HLIN
Sbjct: 174 NRSRKPEAEEELGAR----------------YVSLDELLAESDFVSLHCPLTPETRHLIN 217

Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
            ERLA MK  AIL+N +RG V+DE ALVE LK   +   GLDVFE
Sbjct: 218 AERLALMKPTAILINTARGGVVDEDALVEALKSGKIAGAGLDVFE 262

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  226 bits (579), Expect = 2e-72
 Identities = 112/271 (41%), Positives = 147/271 (54%), Gaps = 29/271 (10%)

Query: 32  LLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI-GQLTEDWGETLFAALSRAGGKAF 90
           LL      V +    +  L+ E++I L+ D  DGVI G   +   E + AA  R   K  
Sbjct: 19  LLEAAGFEVVLNPLGR-PLTEEELIELLKD-ADGVIAG--LDPITEEVLAAAPRL--KVI 72

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           S   VGY+N+D+ AA K GI V NTPG  + + AEL   L LA AR+I +AD  +RAG  
Sbjct: 73  SRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQADREVRAG-- 130

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW     VG  L G+T+G+IG GRIG A AR +  GF M ++ YD Y            
Sbjct: 131 -GWDR--PVGTELYGKTLGIIGLGRIGKAVARRLS-GFGMKVLAYDPYPDE--------- 177

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
            +F K +G + V      S++E+L+E+D ISLH  L   T HLIN   LA MK  AIL+N
Sbjct: 178 -EFAKEHGVEFV------SLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILIN 230

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
            +RG ++DE AL E LK   +    LDVFE 
Sbjct: 231 TARGGLVDEEALYEALKSGRIAGAALDVFEE 261

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  222 bits (569), Expect = 7e-71
 Identities = 103/283 (36%), Positives = 138/283 (48%), Gaps = 49/283 (17%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           + LL E    V++       LS E+++A+I D  D +I     ++T +    +  A    
Sbjct: 13  LELLREAGIEVDV----APGLSEEELLAIIAD-ADALIVRSATKVTAE----VIEAAPRL 63

Query: 82  --LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
             + RAG        VG +N+DV AA   GI V N PG  T + AE   +L LA AR I 
Sbjct: 64  KVIGRAG--------VGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIP 115

Query: 140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY- 198
           +AD  +RAG    W    F+G  L+G+T+G++G GRIG   AR     F M ++ YD Y 
Sbjct: 116 QADASLRAG---KWDRKKFMGVELRGKTLGIVGLGRIGREVARRAR-AFGMKVLAYDPYI 171

Query: 199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER 258
            A R                          S+DE+L EAD ISLH  L   T  LIN E 
Sbjct: 172 SAERAAAGGV-----------------ELVSLDELLAEADFISLHTPLTPETRGLINAEE 214

Query: 259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           LA MK  AIL+N +RG ++DE AL + LK   +    LDVFE 
Sbjct: 215 LAKMKPGAILINTARGGIVDEAALADALKSGKIAGAALDVFEQ 257

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score =  220 bits (564), Expect = 5e-70
 Identities = 105/288 (36%), Positives = 149/288 (51%), Gaps = 25/288 (8%)

Query: 14  GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTED 73
            K  V+ST+ +P    +   +++   VE        L+ +  +A      D VI  + + 
Sbjct: 1   MKIVVLSTRKLP--PEVLERLKEKFEVERYEDD---LTPDTELAERLKDADAVITFVNDR 55

Query: 74  WGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA 133
               +   L     K  +  + GY+NVD+ AA + GI V N PG  TE  AE A +L LA
Sbjct: 56  IDAEVLEKLPGL--KLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILA 113

Query: 134 AARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
            ARRI E D  +R G +     P+  +G  L+G+T+G+IG GRIG A AR + +GF M +
Sbjct: 114 LARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRL-KGFGMKV 172

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH 252
           +YYD       EK      +++               +DE+L E+D+ISLH  L   T H
Sbjct: 173 LYYDRSPNPEAEK--ELGARYV--------------DLDELLAESDIISLHCPLTPETRH 216

Query: 253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           LIN E LA MK  AILVN +RG ++DE AL++ LK   +   GLDVFE
Sbjct: 217 LINAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFE 264

Length = 324

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  217 bits (555), Expect = 8e-69
 Identities = 99/274 (36%), Positives = 144/274 (52%), Gaps = 34/274 (12%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTE-------DWGETLFAALSRAG 86
           +E++  V        ++S E+++  I D  D +I  L+        D  + L        
Sbjct: 17  LEENFEV-TYYDGLGLISKEELLERIAD-YDALITPLSTPVDKEIIDAAKNL-------- 66

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K  +N   G++N+DV+ A + GI V NTP V TE TAEL   L LA ARRI E D  MR
Sbjct: 67  -KIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEGDRLMR 125

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206
            G + GW P  F+G+ L G+T+G+IG GRIG A AR   + F M ++YY+ ++ +   + 
Sbjct: 126 RGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVAR-RAKAFGMKILYYNRHRLSEETE- 183

Query: 207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA 266
               G           T+     +DE+L+E+D +SLH      T+HLI+      MK  A
Sbjct: 184 -KELG----------ATYV---DLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTA 229

Query: 267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
            L+N +RGP++DE ALV+ LK   +    LDVFE
Sbjct: 230 YLINAARGPLVDEKALVDALKTGEIAGAALDVFE 263

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score =  213 bits (545), Expect = 2e-67
 Identities = 91/254 (35%), Positives = 127/254 (50%), Gaps = 22/254 (8%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK 107
             L  +++ AL+ D  D +I   T      + A   +   K       G +N+D++AA K
Sbjct: 28  DDLLADELEALLAD-ADALIVSSTTPVTAEVLAKAPKL--KFIQVAGAGVDNIDLDAAKK 84

Query: 108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT 167
            GI V N PG   E  AE A  L LA  RR+  AD  +R G    W    F G  L+G+T
Sbjct: 85  RGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAAVRRGWGWLWAG--FPGYELEGKT 142

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG++G GRIG   A+ + + F M ++YYD  +    E+                    R 
Sbjct: 143 VGIVGLGRIGQRVAKRL-QAFGMKVLYYDRTRKPEPEED----------------LGFRV 185

Query: 228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
            S+DE+L ++DV+ LH  L   T HLIN+E LA MK  A+LVN +RG ++DE AL+  LK
Sbjct: 186 VSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDALLRALK 245

Query: 288 QNPMFRVGLDVFEV 301
              +    LDVFE 
Sbjct: 246 SGKIAGAALDVFEP 259

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score =  204 bits (521), Expect = 1e-63
 Identities = 118/290 (40%), Positives = 167/290 (57%), Gaps = 27/290 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E+   VE+   ++ I   E ++  + D  D ++  L+E  
Sbjct: 2   KPKVFITREIP-ENGIEML-EEHFEVEVWEDEREI-PREVLLEKVRD-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +F A  R   +  +N AVGY+N+DV  A + GI V NTPGVLTE TA+ A +L LA 
Sbjct: 58  DCEVFEAAPRL--RIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLAT 115

Query: 135 ARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           ARR+VEAD F+R+G +      W P +F+G  + G+T+G+IG GRIG A AR   +GF M
Sbjct: 116 ARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARR-AKGFGM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +    EK + A                    ++E+LRE+D +SLH  L K T
Sbjct: 175 RILYYSRTRKPEAEKELGA----------------EYRPLEELLRESDFVSLHVPLTKET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           YH+IN+ERL  MK  AILVN +RG V+D  ALV+ LK+  +   GLDVFE
Sbjct: 219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFE 268

Length = 333

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score =  203 bits (518), Expect = 3e-63
 Identities = 94/250 (37%), Positives = 121/250 (48%), Gaps = 22/250 (8%)

Query: 52  VEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIA 111
            E+ +       D +I  +T    E + AA      KA      G +N+D+ AA K GI 
Sbjct: 35  DEEELLEALADADALIVSVTP-VTEEVLAAAPN--LKAIGRAGAGVDNIDLEAATKRGIL 91

Query: 112 VGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI 171
           V N PG    + AEL  +L LA ARRI +AD   R G    W    F G  L G+TVG+I
Sbjct: 92  VVNAPGGNAISVAELVLALLLALARRIPDADASQRRG---EWDRKAFRGTELAGKTVGII 148

Query: 172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD 231
           G GRIG A A+ + + F M +I YD Y            G                 S+D
Sbjct: 149 GLGRIGRAVAKRL-KAFGMKVIGYDPYSPRERAGVDGVVG---------------VDSLD 192

Query: 232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM 291
           E+L EAD+++LH  L   T  LIN E LA MK  AIL+N +RG V+DE AL+  L    +
Sbjct: 193 ELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVDEDALLAALDSGKI 252

Query: 292 FRVGLDVFEV 301
               LDVFE 
Sbjct: 253 AGAALDVFEE 262

Length = 324

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score =  191 bits (487), Expect = 1e-58
 Identities = 81/207 (39%), Positives = 109/207 (52%), Gaps = 20/207 (9%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           VG +N+DV  A K GI V NTPG  + + AEL   L L+ AR I  A+  M+ G    W 
Sbjct: 72  VGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANREMKLG---KWN 128

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              + G  L+G+T+G+IG GRIG   A++      MN+I YD Y        +       
Sbjct: 129 KKKYKGIELRGKTLGIIGFGRIGREVAKI-ARALGMNVIAYDPYPKDEQAVELGV----- 182

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                      +  S++E+L+ +D ISLH  L   T H+INK+ L  MK  AI++N SRG
Sbjct: 183 -----------KTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRG 231

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEV 301
            VIDE AL+E LK   +    LDVFE 
Sbjct: 232 GVIDEEALLEALKSGKLAGAALDVFEN 258

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score =  183 bits (467), Expect = 1e-55
 Identities = 97/284 (34%), Positives = 139/284 (48%), Gaps = 41/284 (14%)

Query: 28  RWINLLIEQ----DCRVEIC-TQKKTILSVEDIIALIGDKCDGVIGQ---LTEDWGETLF 79
            + +L IE+    +  VE+   Q +T    +++I    D  D ++ Q   +T +    + 
Sbjct: 9   DFPDLDIEREVLEEAGVELVDAQSRTE---DELIEAAAD-ADALLVQYAPVTAE----VI 60

Query: 80  AALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
            AL R   K      VG +NVDV AA + GI V N P   TE  A+ A +L LA AR++ 
Sbjct: 61  EALPR--LKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLP 118

Query: 140 EADEFMRAGLYDGWLPNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDL 197
             D  +RAG +D  +     G +  L+G T+G++G GRIG A A+   + F   +I YD 
Sbjct: 119 FLDRAVRAGGWDWTV----GGPIRRLRGLTLGLVGFGRIGRAVAKRA-KAFGFRVIAYDP 173

Query: 198 YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257
           Y                  +G   +   R  S+DE+L  +DV+SLH  L   T HLI+ E
Sbjct: 174 Y----------------VPDGVAALGGVRVVSLDELLARSDVVSLHCPLTPETRHLIDAE 217

Query: 258 RLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
            LA MK  A LVN +RG ++DE AL   LK   +    LDV E 
Sbjct: 218 ALALMKPGAFLVNTARGGLVDEAALARALKSGRIAGAALDVLEE 261

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score =  182 bits (465), Expect = 4e-55
 Identities = 82/238 (34%), Positives = 124/238 (52%), Gaps = 20/238 (8%)

Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTET 122
            DGV+ Q T  + E ++  L+  G K  +  + G + +D++ A + G+ + N P      
Sbjct: 45  YDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRA 104

Query: 123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
            AE A + +L   R   E D  +  G +  W P L +G  ++  TVG+IG GRIGSA A+
Sbjct: 105 IAEFAVTQALNLLRNTPEIDRRVAKGDFR-WAPGL-IGREIRDLTVGIIGTGRIGSAAAK 162

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +  +GF   +I YD Y    LEKF+  Y                  S++++L++AD+ISL
Sbjct: 163 IF-KGFGAKVIAYDPYPNPELEKFLLYY-----------------DSLEDLLKQADIISL 204

Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           H  L K  +HLIN E  A MK  AILVN +RG ++D  AL++ L    +    LD +E
Sbjct: 205 HVPLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYE 262

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  181 bits (462), Expect = 7e-55
 Identities = 99/288 (34%), Positives = 137/288 (47%), Gaps = 29/288 (10%)

Query: 17  RVVSTKPMPGTRW--INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           +V+   P        +  L+     VE+     T   +++  AL+ D  D ++  + +  
Sbjct: 1   KVLFLGPEFPDAEELLRALLPPAPGVEV----VTAAELDEEAALLAD-ADVLVPGMRKVI 55

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L AA  R   +      VG + VD+ AA   GI V N PG   E+ AE A  L LA 
Sbjct: 56  DAELLAAAPRL--RLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLAL 113

Query: 135 ARRIVEADEFMRAGLYDGW-LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
            RR+ EAD  +RAG    W  P       L G+TVG++G G IG A AR +  GF + +I
Sbjct: 114 LRRLPEADRELRAG---RWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLR-GFGVEVI 169

Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL 253
           YYD               +F     E+     R   +DE+L E+DV+SLH  L   T HL
Sbjct: 170 YYD---------------RFRDPEAEEKDLGVRYVELDELLAESDVVSLHVPLTPETRHL 214

Query: 254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           I  E LA MK  AIL+N +RG ++DE AL+  L+   +   GLDVF  
Sbjct: 215 IGAEELAAMKPGAILINTARGGLVDEEALLAALRSGHLAGAGLDVFWQ 262

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain

 Score =  175 bits (446), Expect = 3e-54
 Identities = 77/172 (44%), Positives = 96/172 (55%), Gaps = 21/172 (12%)

Query: 129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
           +L LA ARRI EAD  +RAG    W P+  +G  L G+TVG+IG GRIG A AR + + F
Sbjct: 2   ALLLALARRIPEADRQVRAG---RWRPDALLGRELSGKTVGIIGLGRIGRAVARRL-KAF 57

Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            M +I YD Y     E     Y                  S+DE+L E+DV+SLH  L  
Sbjct: 58  GMKVIAYDRYPKAEAEALGARY-----------------VSLDELLAESDVVSLHLPLTP 100

Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
            T HLIN ERLA MK  AIL+N +RG ++DE AL+  LK   +    LDVFE
Sbjct: 101 ETRHLINAERLALMKPGAILINTARGGLVDEDALIAALKSGRIAGAALDVFE 152

This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175

>gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  183 bits (468), Expect = 1e-53
 Identities = 102/284 (35%), Positives = 138/284 (48%), Gaps = 55/284 (19%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG----QLTEDWGETLFAALS----- 83
           +++    VE+    KT L  E+++ +IGD  D +I     ++T +    +  A       
Sbjct: 16  ILKDAPGVEVDV--KTGLDKEELLEIIGD-YDALIVRSATKVTAE----VLEAAKNLKVI 68

Query: 84  -RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEAD 142
            RAG        VG +NVDV AA + GI V N P   T + AE   +L LA AR I +A 
Sbjct: 69  GRAG--------VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAH 120

Query: 143 EFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA-RMMVEGFKMNLIYYDLY--- 198
             ++AG    W    F+G  L G+T+G+IG GRIGS  A R     F M +I YD Y   
Sbjct: 121 ASLKAGK---WERKKFMGVELYGKTLGIIGLGRIGSEVAKRAK--AFGMKVIAYDPYISP 175

Query: 199 -QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE 257
            +A +L              G + V      S+DE+L  AD I+LH  L   T  LI  E
Sbjct: 176 ERAAQL--------------GVELV------SLDELLARADFITLHTPLTPETRGLIGAE 215

Query: 258 RLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
            LA MK    ++NC+RG +IDE AL E LK   +    LDVFE 
Sbjct: 216 ELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEK 259

Length = 526

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score =  174 bits (443), Expect = 6e-52
 Identities = 85/236 (36%), Positives = 120/236 (50%), Gaps = 22/236 (9%)

Query: 65  GVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTA 124
           G  G   E+    L + L     K  ++   GY+ +DV+A  K GI V NTPG + E TA
Sbjct: 60  GETGPFDEE----LISPLP-PSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATA 114

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           + A  L L A R    A+   RAG + G+L      +  +G+T+G++G G IG A AR  
Sbjct: 115 DTALFLILGALRNFSRAERSARAGKWRGFLDLTLAHDP-RGKTLGILGLGGIGKAIARKA 173

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
              F M +IY++  +     +   A                   S+DE+L ++DV+SL+ 
Sbjct: 174 A-AFGMKIIYHNRSRLPEELEKALA---------------TYYVSLDELLAQSDVVSLNC 217

Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
            L   T HLINK+  A MK   I+VN +RG VIDE ALV+ L+   +   GLDVFE
Sbjct: 218 PLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALVDALESGKVASAGLDVFE 273

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  172 bits (438), Expect = 3e-51
 Identities = 88/237 (37%), Positives = 132/237 (55%), Gaps = 21/237 (8%)

Query: 66  VIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPG-VLTETTA 124
           +I  +T ++ +  F        K  +   +GY+NVD+ AA ++G+ V   PG V  +  A
Sbjct: 51  IIASVTPNFDKEFFEYNDGL--KLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVA 108

Query: 125 ELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMM 184
           E A +L L   R+I +A E ++ G +       FVG+ L G+TVG+IG G IGS  A ++
Sbjct: 109 EHAVALILTVLRKINQASEAVKEGKWT--ERANFVGHELSGKTVGIIGYGNIGSRVAEIL 166

Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            EGF   ++ YD Y +           + +K  G +PV      S++E+L E+D+ISLH 
Sbjct: 167 KEGFNAKVLAYDPYVSE----------EVIKKKGAKPV------SLEELLAESDIISLHA 210

Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
            L + TYH+IN++  + MKK  ILVN +RG +IDE AL+E LK   +   GLDV E 
Sbjct: 211 PLTEETYHMINEKAFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEE 267

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  170 bits (432), Expect = 2e-50
 Identities = 84/271 (30%), Positives = 124/271 (45%), Gaps = 27/271 (9%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
             +L      VEI T    +L+ ++   L     D ++   T+     L       G K 
Sbjct: 17  KEILKAGGVDVEIVT---YLLNDDETAELAKG-ADAILTAFTDKIDAELLDKA--PGLKF 70

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL 149
            S  A GY+N+D++ A + GI V N P       AE   +L LA  R     DE  +   
Sbjct: 71  ISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQD 130

Query: 150 YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
                  +  G  L+ QTVGV+G G+IG A A+   +GF M +I YD ++   LE     
Sbjct: 131 LQ-DAGVI--GRELEDQTVGVVGTGKIGRAVAQRA-KGFGMKVIAYDPFRNPELEDKGVK 186

Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
           Y                  S++E+ + +D+ISLH  L    +H+IN+E    MKK  I++
Sbjct: 187 Y-----------------VSLEELFKNSDIISLHVPLTPENHHMINEEAFKLMKKGVIII 229

Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           N +RG ++D  AL+E L    +F  GLDV E
Sbjct: 230 NTARGSLVDTEALIEALDSGKIFGAGLDVLE 260

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  166 bits (422), Expect = 6e-49
 Identities = 71/207 (34%), Positives = 105/207 (50%), Gaps = 18/207 (8%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  NVDV AA + GI V NTPG   E  AE    L LA  R I  A   ++ G +     
Sbjct: 77  GPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYY 136

Query: 156 NL-FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           N    G  L+G+TVG++G G IG   A+ + + F   ++ YD         +V    + +
Sbjct: 137 NYDGYGPELRGKTVGIVGFGAIGRRVAKRL-KAFGAEVLVYD--------PYVDP--EKI 185

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
           +A+G + V      S++E+L+ +DV+SLH  L   T  +I  E  A MK  A  +N +R 
Sbjct: 186 EADGVKKV------SLEELLKRSDVVSLHARLTPETRGMIGAEEFALMKPTAYFINTARA 239

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEV 301
            ++DE AL+E L++  +    LDVF  
Sbjct: 240 GLVDEDALIEALEEGKIGGAALDVFPE 266

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score =  166 bits (422), Expect = 1e-48
 Identities = 83/205 (40%), Positives = 111/205 (54%), Gaps = 21/205 (10%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G+NNVD+ AA + GI V   P       AE A +L LA  R+I  A   +R G +   L 
Sbjct: 78  GFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYNRVREGNFS--LD 135

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
            L +G  L G+TVGVIG G+IG A+AR++  GF   ++ YD Y    L K    Y     
Sbjct: 136 GL-LGFDLHGKTVGVIGTGKIGQAFARILK-GFGCRVLAYDPYPNPELAKLGVEYV---- 189

Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
                         +DE+L E+D+ISLH  L   T+HLIN E +A MK   +L+N SRG 
Sbjct: 190 -------------DLDELLAESDIISLHCPLTPETHHLINAETIAKMKDGVMLINTSRGG 236

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFE 300
           +ID  AL+E LK   +  +GLDV+E
Sbjct: 237 LIDTKALIEALKSGKIGGLGLDVYE 261

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score =  169 bits (431), Expect = 2e-48
 Identities = 103/300 (34%), Positives = 150/300 (50%), Gaps = 57/300 (19%)

Query: 17  RVVSTKPM-PGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLT 71
           +V+   P+ P    I++L +    V++    +T LS E+++ +I D  D +I     ++T
Sbjct: 1   KVLIADPISPDG--IDILEDVGVEVDV----QTGLSREELLEIIPDY-DALIVRSATKVT 53

Query: 72  EDWGETLFAALS------RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAE 125
           E+    + AA        RAG        VG +N+D+ AA   GI V N P   T + AE
Sbjct: 54  EE----VIAAAPKLKVIGRAG--------VGVDNIDIEAATARGILVVNAPTGNTISAAE 101

Query: 126 LAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV 185
            A ++ LAAAR I +AD  ++ G    W    F+G  L G+T+GVIG GRIGS  A+   
Sbjct: 102 HALAMLLAAARNIPQADASLKEG---EWDRKAFMGTELYGKTLGVIGLGRIGSIVAKR-A 157

Query: 186 EGFKMNLIYYDLY----QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           + F M ++ YD Y    +A +L                     +    +DE+L  AD I+
Sbjct: 158 KAFGMKVLAYDPYISPERAEQL-------------------GVELVDDLDELLARADFIT 198

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           +H  L   T  LI  E LA MKK  I+VNC+RG +IDE AL E L++  +    LDVFE 
Sbjct: 199 VHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEK 258

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score =  163 bits (415), Expect = 6e-48
 Identities = 77/268 (28%), Positives = 115/268 (42%), Gaps = 23/268 (8%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           L+++   VE+  +    L  E+++    D  D +I + T      +  A      K  + 
Sbjct: 14  LLKEGGEVEVHDE----LLTEELLEAAKD-ADALIVRSTTPVTAEVLEAAPGL--KVIAR 66

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +N+D++AA + GI V N PG  TE+ AEL   L LA ARRI EAD  +RAG +  
Sbjct: 67  RGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASVRAGDWKK 126

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
             P       L G+T+GVIG G IG   A +  +   M ++ YD Y      +       
Sbjct: 127 GGPIGL---ELYGKTLGVIGGGGIGGIGAAIA-KALGMGVVAYDPYPNPERAEEGGVEVL 182

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
            L               + ++    D+I+L P     T H+I  E    +K    + N  
Sbjct: 183 LLDLL------------LLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNAR 230

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFE 300
            G VI+E AL   L++         V E
Sbjct: 231 GGGVIEEAALDALLEEGIAAAALDVVEE 258

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score =  161 bits (411), Expect = 2e-47
 Identities = 84/240 (35%), Positives = 118/240 (49%), Gaps = 29/240 (12%)

Query: 81  ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
           A++RAG         G NN+DV+AA+K GI V NTPG      AEL  ++ LA +R I++
Sbjct: 53  AIARAG--------AGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQ 104

Query: 141 ADEFMRAGLYDG------WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           A +++  G  D            FVG  L+G+T+GVIG G IG   A        M +I 
Sbjct: 105 AIKWVTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANA-ALALGMKVIG 163

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           YD Y +      ++   Q             R +S++E+L  AD I+LH  L   T  LI
Sbjct: 164 YDPYLSVEAAWKLSVEVQ-------------RVTSLEELLATADYITLHVPLTDETRGLI 210

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHIST 314
           N E LA MK  AIL+N +RG ++DE AL+E L +  +    +  F    L       I+T
Sbjct: 211 NAELLAKMKPGAILLNFARGEIVDEEALLEALDEGKL-GGYVTDFPEPALLGHLPNVIAT 269

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score =  159 bits (405), Expect = 2e-46
 Identities = 99/284 (34%), Positives = 136/284 (47%), Gaps = 23/284 (8%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +VV T  +     + LL +  C V      +  LS E+++    D  DG++  + +    
Sbjct: 3   KVVITHKVH-PEVLELL-KPHCEVISNQTDEP-LSREELLRRCKD-ADGLMAFMPDRIDA 58

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
               A  R   K  +    GY+N DV A    GI V   P +LTE TAEL   L +   R
Sbjct: 59  DFLDACPRL--KIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGR 116

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
            I+  D F+R+G + GW P  + G  L G+TVG++G G +G A AR +  GF   L+YYD
Sbjct: 117 HILAGDRFVRSGKFGGWRPKFY-GTGLDGKTVGILGMGALGRAIARRLS-GFGATLLYYD 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
                 L++   A  Q L           R   +DE+L  +D + L   L   T HLIN 
Sbjct: 175 ---PHPLDQ---AEEQALNL---------RRVELDELLESSDFLVLALPLTPDTLHLINA 219

Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           E LA MK  A+LVN  RG V+DE A+ E LK   +     DVFE
Sbjct: 220 EALAKMKPGALLVNPCRGSVVDEAAVAEALKSGHLGGYAADVFE 263

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  157 bits (400), Expect = 9e-46
 Identities = 77/213 (36%), Positives = 112/213 (52%), Gaps = 26/213 (12%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY-- 150
           +A GYNNVD+ AA + GI V N PG  T++ A+   +L LA AR +   ++ ++AG +  
Sbjct: 72  LATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQK 131

Query: 151 -DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL-EKFVT 208
              +    +    L G+T+G+IG G IG A AR+    F M +++ +   A  L E +V 
Sbjct: 132 SPDFCFWDYPIIELAGKTLGIIGYGNIGQAVARI-ARAFGMKVLFAERKGAPPLREGYV- 189

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                               S+DE+L ++DVISLH  L   T +LIN E LA MK  AIL
Sbjct: 190 --------------------SLDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAIL 229

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           +N +RG ++DE AL + L    +   GLDV   
Sbjct: 230 INTARGGLVDEQALADALNSGKIAGAGLDVLSQ 262

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score =  155 bits (395), Expect = 7e-45
 Identities = 80/212 (37%), Positives = 113/212 (53%), Gaps = 32/212 (15%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADE------FMRAG 148
            G++++D+ A  + GIAV N P     T AE A +L LA +R++ EA E      F +AG
Sbjct: 72  TGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAIERTRRGDFSQAG 131

Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           L          G  L G+T+GV+G GRIG   AR+   GF M ++ YD+      E+   
Sbjct: 132 L---------RGFELAGKTLGVVGTGRIGRRVARIAR-GFGMKVLAYDVVPD---EELAE 178

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
             G              R  S++E+L+E+D+ISLH      T+HLIN+E  A MK  A+L
Sbjct: 179 RLGF-------------RYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVL 225

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           +N +RG V+D  ALV  LK+  +   GLDV E
Sbjct: 226 INTARGAVVDTEALVRALKEGKLAGAGLDVLE 257

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score =  153 bits (390), Expect = 3e-44
 Identities = 77/206 (37%), Positives = 111/206 (53%), Gaps = 22/206 (10%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD+ A  + GI V N  G  TE  AEL   L++   R IV  D  +RAG      
Sbjct: 78  TGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAG----GT 133

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
               +G  L G+TVG++G G IG   AR+  + F   ++ Y      R EK      +  
Sbjct: 134 KAGLIGRELAGKTVGIVGTGAIGLRVARL-FKAFGCKVLAYS-----RSEK------EEA 181

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
           KA G   + +    S+DE+L E+D++SLH  L+  T  LI KE+LA MK+ AIL+N +RG
Sbjct: 182 KALG---IEYV---SLDELLAESDIVSLHLPLNDETKGLIGKEKLALMKESAILINTARG 235

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFE 300
           PV+D  AL + L +  +   G+DVF+
Sbjct: 236 PVVDNEALADALNEGKIAGAGIDVFD 261

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

 Score =  153 bits (388), Expect = 6e-44
 Identities = 85/247 (34%), Positives = 127/247 (51%), Gaps = 23/247 (9%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGK--AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTE 121
           +G++G      GE + AAL     K  A S ++VGY+N DV+A     I + +TP VLTE
Sbjct: 47  EGLLGS-----GEKVDAALLEKMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTE 101

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           T A+   +L L+ ARR+VE  E ++AG +   +   + G  +  +T+G++G GRIG A A
Sbjct: 102 TVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALA 161

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           +    GF M ++Y         E+   A                R   +D +L+E+D + 
Sbjct: 162 QRAHFGFNMPILYNARRHHKEAEERFNA----------------RYCDLDTLLQESDFVC 205

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           +   L   T+HL   E+ A MK  AI +N  RGPV+DE AL+  L++  +   GLDVFE 
Sbjct: 206 IILPLTDETHHLFGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQ 265

Query: 302 TELGFSS 308
             L   S
Sbjct: 266 EPLSVDS 272

Length = 323

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score =  152 bits (387), Expect = 8e-44
 Identities = 79/214 (36%), Positives = 108/214 (50%), Gaps = 22/214 (10%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +   ++D+ AA + GI V  T G     TAEL  +L LA AR + E D  +RA
Sbjct: 71  KLLVTTGMRNASIDLAAAKERGIVVCGTGGG-PTATAELTWALILALARNLPEEDAALRA 129

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G   GW   L  G  L G+T+G++G GRIG+  AR+  + F M                V
Sbjct: 130 G---GWQTTL--GTGLAGKTLGIVGLGRIGARVARIG-QAFGMR---------------V 168

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
            A+   L A        + A S +E+   +DV+SLH VL   T  L+  E LA MK  A+
Sbjct: 169 IAWSSNLTAERAAAAGVEAAVSKEELFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTAL 228

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           LVN SRGP++DE AL+  L+   +    LDVF+V
Sbjct: 229 LVNTSRGPLVDEGALLAALRAGRIAGAALDVFDV 262

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score =  151 bits (384), Expect = 2e-43
 Identities = 79/211 (37%), Positives = 114/211 (54%), Gaps = 24/211 (11%)

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
           ++  VGY+ +D++AA   GI V NTPGVLT+  A+LA  L LA  RRI  AD F+RAG  
Sbjct: 69  ASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFVRAG-- 126

Query: 151 DGWLPNLF-VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
             W    F +   + G+ VG++G GRIG A AR  +E F M + Y+      R  K    
Sbjct: 127 -RWPKGAFPLTRKVSGKRVGIVGLGRIGRAIAR-RLEAFGMEIAYHG-----RRPK---- 175

Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
                       V ++  +S+ E+  E+DV+ +       T HL+N E L  +  + +LV
Sbjct: 176 ----------PDVPYRYYASLLELAAESDVLVVACPGGPATRHLVNAEVLEALGPDGVLV 225

Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           N +RG V+DE AL+  L++  +   GLDVFE
Sbjct: 226 NVARGSVVDEAALIAALQEGRIAGAGLDVFE 256

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score =  151 bits (383), Expect = 4e-43
 Identities = 86/267 (32%), Positives = 126/267 (47%), Gaps = 34/267 (12%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVN 103
           T  K  L++E+     G     ++G         L   L  AG K  S  ++GY+++D++
Sbjct: 28  TLTKEPLTLENAHLAEGYDGISILG--KSKISAELLEKLKEAGVKYISTRSIGYDHIDLD 85

Query: 104 AANKYGIAVGNTP----GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           AA + GI V N       V     A+    L L A R+  +     RA + D  L  L  
Sbjct: 86  AAKELGIKVSNVTYSPNSV-----ADYTVMLMLMALRKYKQI--MKRAEVNDYSLGGL-Q 137

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L+  TVGVIG GRIG A  + +  GF   ++ YD Y    ++K+   Y         
Sbjct: 138 GRELRNLTVGVIGTGRIGQAVIKNL-SGFGCKILAYDPYPNEEVKKYAE-Y--------- 186

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279
                     +D + +E+D+I+LH  L + TYHLINKE +A MK   I++N +RG +ID 
Sbjct: 187 --------VDLDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDT 238

Query: 280 VALVEHLKQNPMFRVGLDVFEVTELGF 306
            AL+E L+   +    LDV E  E G 
Sbjct: 239 EALIEGLESGKIGGAALDVIE-GEDGI 264

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  138 bits (349), Expect = 3e-38
 Identities = 70/208 (33%), Positives = 102/208 (49%), Gaps = 21/208 (10%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G +++ +    + G+ V N  G  +   AE A +L LA A+RIVE D  +R G++ G
Sbjct: 67  PSAGVDHLPLERLPE-GVVVANNHG-NSPAVAEHALALILALAKRIVEYDNDLRRGIWHG 124

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
                     L+G+TVG++G G IG   AR++ + F M                V    +
Sbjct: 125 RAGEEPESKELRGKTVGILGYGHIGREIARLL-KAFGMR---------------VIGVSR 168

Query: 213 FLKANGEQPVTWKRASSM-DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             K   ++   +    S  DE L +ADV+ +   L K T  LI    LA MK  AILVN 
Sbjct: 169 SPKE--DEGADFVGTLSDLDEALEQADVVVVALPLTKQTRGLIGAAELAAMKPGAILVNV 226

Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVF 299
            RGPV+DE AL E LK+ P+    +DV+
Sbjct: 227 GRGPVVDEEALYEALKERPIAGAAIDVW 254

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score =  131 bits (333), Expect = 1e-35
 Identities = 62/193 (32%), Positives = 90/193 (46%), Gaps = 21/193 (10%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV 168
           GI V +      E  AE   +  L A RRI       RAG  D   P    G  L G+TV
Sbjct: 95  GILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRAG-RDWGWPTRRGGRGLYGRTV 153

Query: 169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS 228
           G++G GRIG A   + +  F + ++ YD         ++ A      A G          
Sbjct: 154 GIVGFGRIGRAVVEL-LRPFGLRVLVYD--------PYLPA--AEAAALGV------ELV 196

Query: 229 SMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK 287
           S+DE+L  +DV+SLH P+  +T   +I+   LA M+  A  +N +RG ++DE AL+  L+
Sbjct: 197 SLDELLARSDVVSLHAPLTPETR-GMIDARLLALMRDGATFINTARGALVDEAALLAELR 255

Query: 288 QNPMFRVGLDVFE 300
                R  LDV +
Sbjct: 256 SG-RLRAALDVTD 267

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330

>gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score =  128 bits (325), Expect = 8e-35
 Identities = 70/205 (34%), Positives = 107/205 (52%), Gaps = 22/205 (10%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G N VD++AA K GI V N P   T + AEL     +  ARR+ + +     G    W 
Sbjct: 73  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRG---IWN 129

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
            +    + ++G+T+G+IG G IGS  + +  E   M +I+YD+  A +L       G   
Sbjct: 130 KSATGSHEVRGKTLGIIGYGHIGSQLSVL-AEALGMRVIFYDI--AEKL-----PLG--- 178

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                     ++ SS++E+L EAD ++LH     +T ++I  E +A MKK AIL+N SRG
Sbjct: 179 --------NARQVSSLEELLAEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRG 230

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVF 299
            V+D  AL E L+   +    +DVF
Sbjct: 231 TVVDIDALAEALRSGHLAGAAVDVF 255

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score =  125 bits (316), Expect = 2e-33
 Identities = 73/254 (28%), Positives = 116/254 (45%), Gaps = 28/254 (11%)

Query: 50  LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG 109
           L+ E++    G   D VI +      +         G K      VG+N++D+ AA + G
Sbjct: 34  LNDENVHLAKG--HDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDLEAAKELG 91

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQT 167
             +   P       AELA +L++  +R             +  D   P +F    ++  T
Sbjct: 92  FKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRTANKNFKVD---PFMF-SKEIRNST 147

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA 227
           VG+IG GRIG   A++  +G    +I YD+Y +   +  VT                   
Sbjct: 148 VGIIGTGRIGLTAAKLF-KGLGAKVIGYDIYPSDAAKDVVTFV----------------- 189

Query: 228 SSMDEVLREADVISLH-PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            S+DE+L+++D+ISLH P +      LINKE ++ MK  AIL+N +RG + DE A++E L
Sbjct: 190 -SLDELLKKSDIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEAL 248

Query: 287 KQNPMFRVGLDVFE 300
           +   +   G DV  
Sbjct: 249 ESGKLAGFGTDVLN 262

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional

 Score =  124 bits (314), Expect = 3e-33
 Identities = 64/213 (30%), Positives = 105/213 (49%), Gaps = 28/213 (13%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            A G NNVD+  A K GIAV N  G  TE+ A+   ++ L+   RI   D ++++G Y  
Sbjct: 70  TATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSE 129

Query: 153 WLPNLFVG-----NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
               +F         +KG+  G+IG G IG   A++  + F   ++YY      + E++ 
Sbjct: 130 --SPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKI-AQAFGAKVVYYSTSGKNKNEEY- 185

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
                                S++E+L+ +D+IS+H  L++ T +LI  + L  +K  AI
Sbjct: 186 ------------------ERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAI 227

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           L+N  RG +++E  L + L +  +   GLDV E
Sbjct: 228 LINVGRGGIVNEKDLAKALDEKDI-YAGLDVLE 259

Length = 311

>gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains

 Score =  124 bits (314), Expect = 7e-33
 Identities = 65/210 (30%), Positives = 100/210 (47%), Gaps = 47/210 (22%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAE-LAASLSLAAARRIVEADEFMRAGLYDGWL 154
           G +++D +   + GI   N PG    + AE + ++L + A R+                 
Sbjct: 67  GTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLAQRQ----------------- 109

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  LKG+TVG++G G +GS  AR  +E   MN++  D  +A              
Sbjct: 110 -----GFSLKGKTVGIVGVGNVGSRLARR-LEALGMNVLLCDPPRAEAEGDPGFV----- 158

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVN 270
                         S++E+L EAD+I+LH  L +     TYHL++++ LA +K   IL+N
Sbjct: 159 --------------SLEELLAEADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILIN 204

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
            SRG VID  AL+  L++    RV LDV+E
Sbjct: 205 ASRGAVIDNQALLALLQRGKDLRVVLDVWE 234

D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343

>gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional

 Score =  115 bits (291), Expect = 3e-29
 Identities = 86/262 (32%), Positives = 126/262 (48%), Gaps = 39/262 (14%)

Query: 47  KTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAALSR--AGGKAFSNMAVGYNN 99
           K  L  E++I  I D     IG     QLTE+    + AA  +  A G  F    +G N 
Sbjct: 39  KGALDEEELIEAIKDA--HFIGIRSRTQLTEE----VLAAAEKLVAIG-CFC---IGTNQ 88

Query: 100 VDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV 159
           VD++AA K GI V N P   T + AEL     +   R I E +     G   GW  +   
Sbjct: 89  VDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRG---GWNKSAAG 145

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
              ++G+T+G++G G IG+  + ++ E   M + +YD+    +L       G     N  
Sbjct: 146 SFEVRGKTLGIVGYGHIGTQLS-VLAESLGMRVYFYDI--EDKL-----PLG-----NAR 192

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE 279
           Q        S++E+L ++DV+SLH     +T ++I  E LA MK  AIL+N SRG V+D 
Sbjct: 193 Q------VGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVVDI 246

Query: 280 VALVEHLKQNPMFRVGLDVFEV 301
            AL + LK   +    +DVF V
Sbjct: 247 DALADALKSGHLAGAAIDVFPV 268

Length = 409

>gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated

 Score =  113 bits (285), Expect = 6e-29
 Identities = 59/238 (24%), Positives = 108/238 (45%), Gaps = 21/238 (8%)

Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETT 123
           DG+         E ++  L+  G K  +  + G++  D+  A KY + + N P    E+ 
Sbjct: 47  DGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESI 106

Query: 124 AELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
           AE   + ++   R   +    +R   +D  W P + +   +K   V VIG GRIG A A+
Sbjct: 107 AEFTVTQAINLVRHFNQIQTKVR--EHDFRWEPPI-LSRSIKDLKVAVIGTGRIGLAVAK 163

Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +  +G+  +++ YD +   +   +V                     +++E +  AD+++L
Sbjct: 164 IFAKGYGSDVVAYDPFPNAKAATYVD-----------------YKDTIEEAVEGADIVTL 206

Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           H    K  ++L N +     KK A+ VNC+RG ++D  AL++ L    +    LD +E
Sbjct: 207 HMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYE 264

Length = 332

>gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score =  110 bits (277), Expect = 6e-28
 Identities = 67/217 (30%), Positives = 104/217 (47%), Gaps = 23/217 (10%)

Query: 96  GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP 155
           G  N+D+  A + GI + N P    +   E A  + LA   ++  AD+ +R G+   W  
Sbjct: 72  GLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQEVRNGI---WDR 128

Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
               G  L G+TVG+IG G +G A+A+ +  GF   +I YD Y+             F  
Sbjct: 129 EGNRGVELMGKTVGIIGYGNMGKAFAKRL-SGFGCKVIAYDKYK------------NFGD 175

Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
           A  EQ        S++ + +EAD++SLH  L   T  ++NKE +++ KK    +N +RG 
Sbjct: 176 AYAEQ-------VSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGK 228

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHI 312
           V+    LV+ LK   +    LDV E  +  F S  + 
Sbjct: 229 VVVTKDLVKALKSGKILGACLDVLEYEKASFESIFNQ 265

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional

 Score =  109 bits (275), Expect = 1e-27
 Identities = 69/217 (31%), Positives = 103/217 (47%), Gaps = 37/217 (17%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GI V N  G  T + A+   +L LA A R+ +  + + AG    W
Sbjct: 74  ATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAG---RW 130

Query: 154 -------LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF 206
                  L + F    L+G+T+G++G G +G A AR+  E F M ++             
Sbjct: 131 QQSSQFCLLD-FPIVELEGKTLGLLGHGELGGAVARL-AEAFGMRVLI------------ 176

Query: 207 VTAYGQFLKANGEQPVTWKRASSM--DEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
                      G+ P    R   +  DE+L + D ++LH  L + T HLI    LA MK 
Sbjct: 177 -----------GQLPGRPARPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKP 225

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
            A+L+N +RG ++DE AL + L+   +     DV  V
Sbjct: 226 GALLINTARGGLVDEQALADALRSGHLGGAATDVLSV 262

Length = 317

>gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional

 Score =  108 bits (271), Expect = 3e-27
 Identities = 65/214 (30%), Positives = 100/214 (46%), Gaps = 36/214 (16%)

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           A G NNVD+ AA + GIAV N  G  + T  E    +  A    ++    + R  L D W
Sbjct: 73  ATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMG---WYRDQLSDRW 129

Query: 154 LPNLFVGNL---------LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                             ++G T+GV G G +G+   R+  +   M ++Y +   A+   
Sbjct: 130 ATC---KQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRL-AQALGMKVLYAEHKGASVCR 185

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
           +  T +                    +EVL++AD+++LH  L +TT +LIN E LA MK 
Sbjct: 186 EGYTPF--------------------EEVLKQADIVTLHCPLTETTQNLINAETLALMKP 225

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
            A L+N  RGP++DE AL++ L+   +    LDV
Sbjct: 226 TAFLINTGRGPLVDEQALLDALENGKIAGAALDV 259

Length = 314

>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional

 Score =  106 bits (265), Expect = 3e-26
 Identities = 77/264 (29%), Positives = 126/264 (47%), Gaps = 30/264 (11%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE---TLFAALSRAGGKAFSNMAVG 96
           VE+ T K+ +LS   +     D+     G  T  +G+    ++  L   G K  +    G
Sbjct: 26  VEVTTSKE-LLSSATV-----DQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAG 79

Query: 97  YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN 156
           ++  D++ A K+ I + N P    ET AE + S++L   RR  + +  ++A  +      
Sbjct: 80  FDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAE- 138

Query: 157 LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA 216
             +   +K  TV +IG GRIG+A A++   GF   +  YD Y    L+        FL  
Sbjct: 139 -IMSKPVKNMTVAIIGTGRIGAATAKIYA-GFGATITAYDAYPNKDLD--------FL-- 186

Query: 217 NGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276
                 T+K   S+ E +++AD+ISLH   +K +YHL +K     +KK AILVN +RG V
Sbjct: 187 ------TYK--DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAV 238

Query: 277 IDEVALVEHLKQNPMFRVGLDVFE 300
           I+   L+  +    +    +D +E
Sbjct: 239 INTPDLIAAVNDGTLLGAAIDTYE 262

Length = 330

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score = 99.3 bits (248), Expect = 1e-23
 Identities = 62/195 (31%), Positives = 96/195 (49%), Gaps = 20/195 (10%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AAN  GI V    G    + AE    + L   R  V   E    G   GW 
Sbjct: 93  IGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPGHEQAIEG---GWN 149

Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V     L+G+TVG +GAGRIG    R + + F ++L+YYD ++             
Sbjct: 150 VADVVKRAYDLEGKTVGTVGAGRIGLRVLRRL-KPFDVHLLYYDRHR------------- 195

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
            L    E+ +   R + +++++ + DV++++  L   T  L NKE L+ MKK A LVN +
Sbjct: 196 -LPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVNTA 254

Query: 273 RGPVIDEVALVEHLK 287
           RG + D  A+ E L+
Sbjct: 255 RGKICDREAVAEALE 269

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 98.0 bits (245), Expect = 2e-23
 Identities = 60/212 (28%), Positives = 86/212 (40%), Gaps = 28/212 (13%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + +      +  + + N  G+     AE      LA AR++              
Sbjct: 66  TSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYARNQAERR--- 122

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-- 210
           W     V   L G+TV ++G G IG   AR   + F M                V     
Sbjct: 123 WQRRGPVR-ELAGKTVLIVGLGDIGREIARRA-KAFGMR---------------VIGVRR 165

Query: 211 -GQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLATMKKEAIL 268
            G+      ++  T      +DE+L EAD V++  P L   T  L N ER A MK  A+L
Sbjct: 166 SGRPAPPVVDEVYT---PDELDELLPEADYVVNALP-LTPETRGLFNAERFAAMKPGAVL 221

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           +N  RG V+DE AL+E L+   +    LDVFE
Sbjct: 222 INVGRGSVVDEDALIEALESGRIAGAALDVFE 253

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 98.2 bits (245), Expect = 5e-23
 Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 24/197 (12%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G ++VD+ AA+++GI V    G  + + AE    + LA  R    +      G   GW 
Sbjct: 123 IGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEG---GW- 178

Query: 155 PNLF-VGNL---LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            N+    +    L+G TVG++GAGRIG A  R + + F + L Y D +   RL + V   
Sbjct: 179 -NIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPFDVKLHYTDRH---RLPEEVEQ- 232

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
                   E  +T+    S D ++   DV+++H  L   T HL + + L+ MK+ + LVN
Sbjct: 233 --------ELGLTYH--VSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVN 282

Query: 271 CSRGPVIDEVALVEHLK 287
            +RG ++D  A+V  L+
Sbjct: 283 TARGKIVDRDAVVRALE 299

Length = 385

>gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 95.4 bits (238), Expect = 1e-22
 Identities = 60/187 (32%), Positives = 84/187 (44%), Gaps = 21/187 (11%)

Query: 114 NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           N  G   ET AE A +L LA  R++       RA  +D       +  LL+G TV ++GA
Sbjct: 78  NAAGAYAETVAEHALALLLAGLRQLPA---RARATTWDPAEE-DDLVTLLRGSTVAIVGA 133

Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
           G IG A   ++   F   +I             V   G+     G        A  +DEV
Sbjct: 134 GGIGRALIPLLA-PFGAKVIA------------VNRSGR--PVEGADETV--PADRLDEV 176

Query: 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293
             +AD + L   L   T HL++   LA MK  A LVN +RGP++D  ALV+ L+   +  
Sbjct: 177 WPDADHVVLAAPLTPETRHLVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAG 236

Query: 294 VGLDVFE 300
             LDV +
Sbjct: 237 AALDVTD 243

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303

>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein

 Score = 94.0 bits (234), Expect = 8e-22
 Identities = 62/210 (29%), Positives = 97/210 (46%), Gaps = 18/210 (8%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLT---ETTAELAASLSLAAARRIVEADEFMRAGLYD 151
           VG   VDV+AA K+GI V   P   T    + AE+A  L L   R+  E    ++A    
Sbjct: 91  VGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLG 150

Query: 152 GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR---LEKFVT 208
              P   +G+ L G+TV ++G G IG   A+ +   F + L+      ATR     +   
Sbjct: 151 E--P---IGDTLFGKTVFILGYGAIGIELAKRL-RPFGVKLL------ATRRSWTSEPED 198

Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                     +          + E   EAD++ L   L K T  ++N E L++MKK A+L
Sbjct: 199 GLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFLSSMKKGALL 258

Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
           VN +RG ++D  A++  L+   +  + +DV
Sbjct: 259 VNIARGGLLDYDAVLAALESGHLGGLAIDV 288

Length = 347

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 92.6 bits (231), Expect = 2e-21
 Identities = 58/219 (26%), Positives = 96/219 (43%), Gaps = 43/219 (19%)

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
            + G + + +    K GI + N  G+ +   AE      L   + + +A +  +      
Sbjct: 67  YSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKNQKEKK--- 123

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI----------YYDLYQATR 202
           W  +  +  L  G+T+  +G G IG   A+ + + F M +I          Y+D      
Sbjct: 124 WKMDSSLLEL-YGKTILFLGTGSIGQEIAKRL-KAFGMKVIGVNTSGRDVEYFD------ 175

Query: 203 LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLAT 261
            + +            E          +DEVL+EAD V+++ P L + T+HL ++     
Sbjct: 176 -KCY---------PLEE----------LDEVLKEADIVVNVLP-LTEETHHLFDEAFFEQ 214

Query: 262 MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           MKK A+ +N  RGP +DE AL+E LK   +    LDVFE
Sbjct: 215 MKKGALFINVGRGPSVDEDALIEALKNKQIRGAALDVFE 253

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated

 Score = 92.8 bits (231), Expect = 4e-21
 Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 24/142 (16%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           L  +T GV+GAG +G    R++  G    ++  D  +           G F+        
Sbjct: 114 LAERTYGVVGAGHVGGRLVRVL-RGLGWKVLVCDPPRQEAEGD-----GDFV-------- 159

Query: 223 TWKRASSMDEVLREADVISLHPVLDKT----TYHLINKERLATMKKEAILVNCSRGPVID 278
                 S++ +L E DVISLH  L K     T HL+++  LA+++  A L+N SRG V+D
Sbjct: 160 ------SLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVD 213

Query: 279 EVALVEHLKQNPMFRVGLDVFE 300
             AL E L         LDV+E
Sbjct: 214 NQALREALLSGEDLDAVLDVWE 235

Length = 381

>gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 85.7 bits (213), Expect = 4e-19
 Identities = 61/195 (31%), Positives = 84/195 (43%), Gaps = 34/195 (17%)

Query: 109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-WLPNLFVGNLLKGQT 167
           G+ + N  GV   +TAELA +L LA+ R +         G ++    P+L        + 
Sbjct: 81  GVTLCNARGVHDASTAELAVALILASLRGLPRFVRAQARGRWEPRRTPSL------ADRR 134

Query: 168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPVTW 224
           V ++G G IG A  R                   RL  F   VT   +  +  GEQ    
Sbjct: 135 VLIVGYGSIGRAIER-------------------RLAPFEVRVTRVARTARP-GEQVHGI 174

Query: 225 KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284
                +  +L EADV+ L   L   T  L++ E LA M   A+LVN +RGPV+D  ALV 
Sbjct: 175 ---DELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVDTDALVA 231

Query: 285 HLKQNPMFRVGLDVF 299
            L    + R  LDV 
Sbjct: 232 ELASGRL-RAALDVT 245

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300

>gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional

 Score = 76.4 bits (188), Expect = 1e-15
 Identities = 59/201 (29%), Positives = 93/201 (46%), Gaps = 38/201 (18%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI------VEADEFMRAG 148
           +G +++D+ AA   G+ V    G    + AE      L   R        V + E+  AG
Sbjct: 130 IGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAG 189

Query: 149 L----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQATRL 203
           +    YD           L+G+TVG +GAGRIG    + + + F  NL+Y+D L     L
Sbjct: 190 IAYRAYD-----------LEGKTVGTVGAGRIGRLLLQRL-KPFNCNLLYHDRLKMDPEL 237

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
           EK   A               K    +D +L + DV+ ++  L + T  + NKER+A MK
Sbjct: 238 EKETGA---------------KFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMK 282

Query: 264 KEAILVNCSRGPVIDEVALVE 284
           K  ++VN +RG ++D  A+ +
Sbjct: 283 KGVLIVNNARGAIMDTQAVAD 303

Length = 386

>gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional

 Score = 71.1 bits (174), Expect = 5e-14
 Identities = 48/220 (21%), Positives = 103/220 (46%), Gaps = 30/220 (13%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K   +++ G +++DV+   +  + + +  G  + + AE A +L LA A+ I E +  M+ 
Sbjct: 51  KMIQSLSAGVDHIDVSGIPE-NVVLCSNAGAYSISVAEHAFALLLAWAKNICENNYNMKN 109

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G +    P      LL  +++G++G G IG   A ++ + F MN+  Y     TR     
Sbjct: 110 GNFKQ-SPT----KLLYNKSLGILGYGGIGRRVA-LLAKAFGMNIYAY-----TR----- 153

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
           +     + +   +P         +++++++D + +   L   T  +IN + L+  +K   
Sbjct: 154 SYVNDGISSIYMEP---------EDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLA 204

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF----EVTE 303
           ++N +R  V+D+  ++  L+ +       DV+     +TE
Sbjct: 205 IINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITE 244

Length = 303

>gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases

 Score = 68.4 bits (167), Expect = 6e-13
 Identities = 47/212 (22%), Positives = 82/212 (38%), Gaps = 30/212 (14%)

Query: 80  AALSRAGGKAFSNMAVGYNNVDVNAAN-KYGIAVGNTPGVLTETT---AELAASLSLAAA 135
           A + + G +      +G ++ D+  A  + G+      GV        +  A  LS+   
Sbjct: 81  ALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIAVEGVELPLLTSNSIGAGELSVQFI 140

Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
            R +E  +  R G              + G+TV V+GAG +G   A+M+  G    ++  
Sbjct: 141 ARFLEVQQPGRLGGAPD----------VAGKTVVVVGAGVVGKEAAQMLR-GLGAQVLIT 189

Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH-PVLDKTTYHLI 254
           D+      +               + +  K    ++E L EADVI     +  K    L+
Sbjct: 190 DINVEALEQ--------------LEELGGKNVEELEEALAEADVIVTTTLLPGKRAGILV 235

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
            +E +  MK  +++VN + G V    AL   L
Sbjct: 236 PEELVEQMKPGSVIVNVAVGAVGCVQALHTQL 267

The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310

>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional

 Score = 65.7 bits (160), Expect = 5e-12
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 24/145 (16%)

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L  +TVG++G G +G      + E   +  +  D  +A R ++     G F      
Sbjct: 111 GFSLHDRTVGIVGVGNVGRRLQARL-EALGIKTLLCDPPRADRGDE-----GDF------ 158

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGP 275
                    S+DE+++EAD+++ H  L K     T HL +++ + ++K  AIL+N  RG 
Sbjct: 159 --------RSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGA 210

Query: 276 VIDEVALVEHLKQNPMFRVGLDVFE 300
           V+D  AL+  L +     V LDV+E
Sbjct: 211 VVDNTALLTCLNEGQKLSVVLDVWE 235

Length = 378

>gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 65.1 bits (159), Expect = 6e-12
 Identities = 55/191 (28%), Positives = 82/191 (42%), Gaps = 35/191 (18%)

Query: 117 GVLTETTAELAASLSLAAARRI----VEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
           GV  E  AE   +  LAAA+R+    V+  E         W         L G T+G++G
Sbjct: 93  GVAAEAIAEFVLAAILAAAKRLPEIWVKGAEQ--------WRRE--PLGSLAGSTLGIVG 142

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG A AR  +    M ++      A R        G+     G +      A+ + E
Sbjct: 143 FGAIGQALARRAL-ALGMRVL------ALRRS------GRPSDVPGVE-----AAADLAE 184

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           +   +D + L   L   T HLIN + LA  K    L+N +RG ++D+ AL+E L      
Sbjct: 185 LFARSDHLVLAAPLTPETRHLINADVLAQAKPGLHLINIARGGLVDQEALLEALDSG--- 241

Query: 293 RVGLDVFEVTE 303
           R+ L   +VT+
Sbjct: 242 RISLASLDVTD 252

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308

>gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 64.8 bits (159), Expect = 8e-12
 Identities = 47/185 (25%), Positives = 75/185 (40%), Gaps = 26/185 (14%)

Query: 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           L +  AE   +  L   R +       R G+   W P          + VGV+G G +G+
Sbjct: 91  LAQGMAEYVLAAVLRLHRDMDRYAAQQRRGV---WKPLPQR--PAAERRVGVLGLGELGA 145

Query: 179 AYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA 237
           A AR +   GF                  V+ + +  K + E    +     +D  L + 
Sbjct: 146 AVARRLAALGFP-----------------VSGWSRSPK-DIEGVTCFHGEEGLDAFLAQT 187

Query: 238 DV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296
           D+ + L P+  +T   ++N E LA + + A L+N  RGP + E  L+  L    +    L
Sbjct: 188 DILVCLLPLTPETR-GILNAELLARLPRGAALINVGRGPHLVEADLLAALDSGHLSGAVL 246

Query: 297 DVFEV 301
           DVFE 
Sbjct: 247 DVFEQ 251

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306

>gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 61/198 (30%), Positives = 82/198 (41%), Gaps = 34/198 (17%)

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWL-------PNLFVGNLLKGQTVGVIGAG 174
           T AE   +L LAA RR+ E  E  R   + G L       P   +  LL G  V + G G
Sbjct: 94  TVAEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLL-GARVLIWGFG 152

Query: 175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ---PVTWKRASSMD 231
            IG   A ++                T L   VT   +   + GE+   PV       + 
Sbjct: 153 SIGQRLAPLL----------------TALGARVTGVAR---SAGERAGFPVV--AEDELP 191

Query: 232 EVLREADV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP 290
           E+L E DV + + P    T  H ++ E LA + K A +VN  RG  +DE ALV  L+   
Sbjct: 192 ELLPETDVLVMILPATPSTA-HALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGR 250

Query: 291 MFRVGLDVFEVTELGFSS 308
           +    LDV     L  SS
Sbjct: 251 LGGAALDVTATEPLPASS 268

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 60.0 bits (146), Expect = 4e-10
 Identities = 48/202 (23%), Positives = 79/202 (39%), Gaps = 20/202 (9%)

Query: 110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG 169
           + +    G+     AE      L  +   ++  E  +   +        V + + G+ VG
Sbjct: 79  VPLCTASGIHGPQIAEWVIGTWLVLSHHFLQYIELQKEQTWGRRQEAYSVEDSV-GKRVG 137

Query: 170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK------FVTAYGQFLKANGEQPVT 223
           ++G G IG   AR+      M +  Y        E        V   G     +G  P  
Sbjct: 138 ILGYGSIGRQTARLAQ-ALGMEVYAYTRSPRPTPESRKDDGYIVPGTGD---PDGSIPSA 193

Query: 224 W---KRASSMDEVLREA-D--VISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPV 276
           W      +S+ E LR+  D  V+SL P+   T  HL+  E    + K++  + N +RG +
Sbjct: 194 WFSGTDKASLHEFLRQDLDLLVVSL-PLTPATK-HLLGAEEFEILAKRKTFVSNIARGSL 251

Query: 277 IDEVALVEHLKQNPMFRVGLDV 298
           +D  ALV  L+   +    LDV
Sbjct: 252 VDTDALVAALESGQIRGAALDV 273

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334

>gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 48/196 (24%), Positives = 68/196 (34%), Gaps = 44/196 (22%)

Query: 99  NVDVNAANKYGIAVGNT-----PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
           NVD+ AA + GI V         GV+    +EL         R +              W
Sbjct: 85  NVDIAAARENGITVTGIRDYGDEGVVEYVISELI--------RLLHGFGGKQ-------W 129

Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
                    L G  VG+IG G  G   A  +   F  ++ YY   +    E     Y   
Sbjct: 130 KE---EPRELTGLKVGIIGLGTTGQMIADAL-SFFGADVYYYSRTRKPDAEAKGIRY--- 182

Query: 214 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273
                  P        ++E+L+  DVI     L K    L+ +E    +    IL N S 
Sbjct: 183 ------LP--------LNELLKTVDVICTC--LPKNVI-LLGEEEFELLGDGKILFNTSL 225

Query: 274 GPVIDEVALVEHLKQN 289
           GP  +  AL + LK +
Sbjct: 226 GPSFEVEALKKWLKAS 241

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294

>gnl|CDD|240621 cd01620, Ala_dh_like, Alanine dehydrogenase and related dehydrogenases

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 21/112 (18%), Positives = 49/112 (43%), Gaps = 15/112 (13%)

Query: 164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT 223
               V +IGAG +G   A++       N++ YD+ +            + ++  G   + 
Sbjct: 161 PPAKVLIIGAGVVGLGAAKIAK-KLGANVLVYDIKEEKL---------KGVETLGGSRLR 210

Query: 224 WKRASSMDEVLREADVI---SLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
           + +   +++ L++ D++    L          LI +E +  MK+ A++V+ +
Sbjct: 211 YSQKEELEKELKQTDILINAILVD--GPRAPILIMEELVGPMKRGAVIVDLA 260

Alanine dehydrogenase/Transhydrogenase, such as the hexameric L-alanine dehydrogenase of Phormidium lapideum, contain 2 Rossmann fold-like domains linked by an alpha helical region. Related proteins include Saccharopine Dehydrogenase (SDH), bifunctional lysine ketoglutarate reductase /saccharopine dehydrogenase enzyme, N(5)-(carboxyethyl)ornithine synthase, and Rubrum transdehydrogenase. Alanine dehydrogenase (L-AlaDH) catalyzes the NAD-dependent conversion of pyrucate to L-alanine via reductive amination. Transhydrogenases found in bacterial and inner mitochondrial membranes link NAD(P)(H)-dependent redox reactions to proton translocation. The energy of the proton electrochemical gradient (delta-p), generated by the respiratory electron transport chain, is consumed by transhydrogenase in NAD(P)+ reduction. Transhydrogenase is likely involved in the regulation of the citric acid cycle. Rubrum transhydrogenase has 3 components, dI, dII, and dIII. dII spans the membrane while dI and dIII protrude on the cytoplasmic/matirx side. DI contains 2 domains with Rossmann folds, linked by a long alpha helix, and contains a NAD binding site. Two dI polypeptides (represented in this sub-family) spontaneously form a heterotrimer with one dIII in the absence of dII. In the heterotrimer, both dI chains may bind NAD, but only one is well-ordered. dIII also binds a well-ordered NADP, but in a different orientation than classical Rossmann domains. Length = 317

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	342
PLN02306	386	hydroxypyruvate reductase	100.0
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	100.0
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	100.0
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK06487	317	glycerate dehydrogenase; Provisional	100.0
KOG0068	406	consensus D-3-phosphoglycerate dehydrogenase, D-is	100.0
PRK06932	314	glycerate dehydrogenase; Provisional	100.0
PRK13243	333	glyoxylate reductase; Reviewed	100.0
PRK07574	385	formate dehydrogenase; Provisional	100.0
PLN03139	386	formate dehydrogenase; Provisional	100.0
PLN02928	347	oxidoreductase family protein	100.0
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	100.0
PRK12480	330	D-lactate dehydrogenase; Provisional	100.0
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	100.0
PRK08605	332	D-lactate dehydrogenase; Validated	100.0
KOG0069	336	consensus Glyoxylate/hydroxypyruvate reductase (D-	100.0
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	100.0
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	100.0
PRK06436	303	glycerate dehydrogenase; Provisional	100.0
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	100.0
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	100.0
KOG0067	435	consensus Transcription factor CtBP [Transcription	99.97
PTZ00075	476	Adenosylhomocysteinase; Provisional	99.88
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.84
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.7
PRK08306	296	dipicolinate synthase subunit A; Reviewed	99.69
PLN02494	477	adenosylhomocysteinase	99.69
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	99.65
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	99.53
PRK13403	335	ketol-acid reductoisomerase; Provisional	99.5
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	99.43
PF03446	163	NAD_binding_2: NAD binding domain of 6-phosphogluc	99.28
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	99.27
COG2084	286	MmsB 3-hydroxyisobutyrate dehydrogenase and relate	99.24
TIGR01505	291	tartro_sem_red 2-hydroxy-3-oxopropionate reductase	99.22
PRK11559	296	garR tartronate semialdehyde reductase; Provisiona	99.2
PRK15461	296	NADH-dependent gamma-hydroxybutyrate dehydrogenase	99.14
PRK12490	299	6-phosphogluconate dehydrogenase-like protein; Rev	99.13
PRK05479	330	ketol-acid reductoisomerase; Provisional	99.06
PRK09599	301	6-phosphogluconate dehydrogenase-like protein; Rev	99.02
PLN02712	667	arogenate dehydrogenase	99.0
COG0499	420	SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me	98.97
PLN02350	493	phosphogluconate dehydrogenase (decarboxylating)	98.93
PTZ00142	470	6-phosphogluconate dehydrogenase; Provisional	98.85
PRK15059	292	tartronate semialdehyde reductase; Provisional	98.84
PRK14189	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.84
PLN02256	304	arogenate dehydrogenase	98.83
PLN02858	1378	fructose-bisphosphate aldolase	98.8
PLN02858	1378	fructose-bisphosphate aldolase	98.8
TIGR00872	298	gnd_rel 6-phosphogluconate dehydrogenase (decarbox	98.8
TIGR00465	314	ilvC ketol-acid reductoisomerase. This is the seco	98.77
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	98.75
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	98.74
TIGR01692	288	HIBADH 3-hydroxyisobutyrate dehydrogenase. This en	98.74
TIGR00873	467	gnd 6-phosphogluconate dehydrogenase, decarboxylat	98.73
KOG0409	327	consensus Predicted dehydrogenase [General functio	98.72
PRK05225	487	ketol-acid reductoisomerase; Validated	98.71
KOG1370	434	consensus S-adenosylhomocysteine hydrolase [Coenzy	98.71
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.71
PRK07066	321	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.66
PRK14179	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.65
PRK14188	296	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.64
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	98.64
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	98.63
PF03807	96	F420_oxidored: NADP oxidoreductase coenzyme F420-d	98.63
PLN02712	667	arogenate dehydrogenase	98.63
PF07991	165	IlvN: Acetohydroxy acid isomeroreductase, catalyti	98.61
PRK14175	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.6
PRK14194	301	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.58
PRK09260	288	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.57
cd01080	168	NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of	98.54
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.5
PRK08818	370	prephenate dehydrogenase; Provisional	98.49
PRK13302	271	putative L-aspartate dehydrogenase; Provisional	98.48
PRK07530	292	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.47
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	98.47
PRK07679	279	pyrroline-5-carboxylate reductase; Reviewed	98.47
PLN02688	266	pyrroline-5-carboxylate reductase	98.46
cd01065	155	NAD_bind_Shikimate_DH NAD(P) binding domain of Shi	98.46
PRK14618	328	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	98.45
PRK07417	279	arogenate dehydrogenase; Reviewed	98.43
PRK10792	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.43
PRK07819	286	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.43
PRK07502	307	cyclohexadienyl dehydrogenase; Validated	98.43
PRK14176	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.41
PRK06545	359	prephenate dehydrogenase; Validated	98.39
PRK08655	437	prephenate dehydrogenase; Provisional	98.38
PRK11199	374	tyrA bifunctional chorismate mutase/prephenate deh	98.37
PRK12491	272	pyrroline-5-carboxylate reductase; Reviewed	98.33
PRK14191	285	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.33
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	98.32
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	98.32
PRK06035	291	3-hydroxyacyl-CoA dehydrogenase; Validated	98.31
PRK05472	213	redox-sensing transcriptional repressor Rex; Provi	98.31
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.3
PRK06928	277	pyrroline-5-carboxylate reductase; Reviewed	98.29
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	98.28
PRK05808	282	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.27
PRK00094	325	gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr	98.27
PF01262	168	AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal	98.25
TIGR02279	503	PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa	98.24
PRK08507	275	prephenate dehydrogenase; Validated	98.22
COG0287	279	TyrA Prephenate dehydrogenase [Amino acid transpor	98.21
PRK08268	507	3-hydroxy-acyl-CoA dehydrogenase; Validated	98.2
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	98.18
TIGR01724	341	hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome	98.17
PRK14170	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.17
PRK07531	495	bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe	98.16
PRK06130	311	3-hydroxybutyryl-CoA dehydrogenase; Validated	98.16
cd05311	226	NAD_bind_2_malic_enz NAD(P) binding domain of mali	98.13
PRK14190	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.13
PRK14173	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.12
PRK06476	258	pyrroline-5-carboxylate reductase; Reviewed	98.1
PRK14169	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.1
PRK07680	273	late competence protein ComER; Validated	98.09
PF02882	160	THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl	98.08
PRK14166	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
PRK14186	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
PRK14178	279	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.07
PRK14171	288	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.06
PRK07634	245	pyrroline-5-carboxylate reductase; Reviewed	98.06
TIGR01035	417	hemA glutamyl-tRNA reductase. This enzyme, togethe	98.05
PRK14172	278	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.05
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	98.04
COG0686	371	Ald Alanine dehydrogenase [Amino acid transport an	98.04
TIGR01546	333	GAPDH-II_archae glyceraldehyde-3-phosphate dehydro	98.03
PLN00203	519	glutamyl-tRNA reductase	98.03
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	98.02
PLN02897	345	tetrahydrofolate dehydrogenase/cyclohydrolase, put	98.02
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	98.01
PRK14192	283	bifunctional 5,10-methylene-tetrahydrofolate dehyd	98.01
cd05191	86	NAD_bind_amino_acid_DH NAD(P) binding domain of am	98.0
PRK14806	735	bifunctional cyclohexadienyl dehydrogenase/ 3-phos	98.0
PRK13304	265	L-aspartate dehydrogenase; Reviewed	97.99
PRK14182	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.99
PLN02616	364	tetrahydrofolate dehydrogenase/cyclohydrolase, put	97.97
PRK14167	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.96
TIGR02371	325	ala_DH_arch alanine dehydrogenase, Archaeoglobus f	97.93
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	97.93
COG2085	211	Predicted dinucleotide-binding enzymes [General fu	97.93
PRK14181	287	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.93
cd05212	140	NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom	97.9
PRK14185	293	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.88
PRK00045	423	hemA glutamyl-tRNA reductase; Reviewed	97.88
PRK09287	459	6-phosphogluconate dehydrogenase; Validated	97.87
cd05213	311	NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain	97.86
PRK06141	314	ornithine cyclodeaminase; Validated	97.85
PF10727	127	Rossmann-like: Rossmann-like domain; InterPro: IPR	97.82
PRK14168	297	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.8
PRK07340	304	ornithine cyclodeaminase; Validated	97.8
PRK11880	267	pyrroline-5-carboxylate reductase; Reviewed	97.78
PF02423	313	OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst	97.77
COG0345	266	ProC Pyrroline-5-carboxylate reductase [Amino acid	97.76
cd01079	197	NAD_bind_m-THF_DH NAD binding domain of methylene-	97.75
COG1023	300	Gnd Predicted 6-phosphogluconate dehydrogenase [Ca	97.73
PRK00258	278	aroE shikimate 5-dehydrogenase; Reviewed	97.72
cd01078	194	NAD_bind_H4MPT_DH NADP binding domain of methylene	97.71
PRK14183	281	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.7
PRK08229	341	2-dehydropantoate 2-reductase; Provisional	97.69
PRK06823	315	ornithine cyclodeaminase; Validated	97.69
PRK08618	325	ornithine cyclodeaminase; Validated	97.68
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	97.67
KOG2380	480	consensus Prephenate dehydrogenase (NADP+) [Amino	97.63
PRK14982	340	acyl-ACP reductase; Provisional	97.62
PRK06046	326	alanine dehydrogenase; Validated	97.6
PTZ00431	260	pyrroline carboxylate reductase; Provisional	97.58
PRK14184	286	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.58
PRK14174	295	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.58
PRK14187	294	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.57
COG2423	330	Predicted ornithine cyclodeaminase, mu-crystallin	97.56
PLN02516	299	methylenetetrahydrofolate dehydrogenase (NADP+)	97.56
PRK14180	282	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.55
COG0059	338	IlvC Ketol-acid reductoisomerase [Amino acid trans	97.54
TIGR02992	326	ectoine_eutC ectoine utilization protein EutC. Mem	97.54
TIGR03376	342	glycerol3P_DH glycerol-3-phosphate dehydrogenase (	97.53
PRK14177	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.52
cd01076	227	NAD_bind_1_Glu_DH NAD(P) binding domain of glutama	97.51
TIGR01915	219	npdG NADPH-dependent F420 reductase. This model re	97.5
PRK06407	301	ornithine cyclodeaminase; Provisional	97.49
PRK14193	284	bifunctional 5,10-methylene-tetrahydrofolate dehyd	97.47
TIGR02354	200	thiF_fam2 thiamine biosynthesis protein ThiF, fami	97.45
COG0190	283	FolD 5,10-methylene-tetrahydrofolate dehydrogenase	97.42
PRK06199	379	ornithine cyclodeaminase; Validated	97.42
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	97.42
PRK13940	414	glutamyl-tRNA reductase; Provisional	97.42
PTZ00345	365	glycerol-3-phosphate dehydrogenase; Provisional	97.41
PRK08291	330	ectoine utilization protein EutC; Validated	97.4
TIGR00507	270	aroE shikimate 5-dehydrogenase. This model finds p	97.39
PRK07589	346	ornithine cyclodeaminase; Validated	97.37
PRK12557	342	H(2)-dependent methylenetetrahydromethanopterin de	97.37
COG1712	255	Predicted dinucleotide-utilizing enzyme [General f	97.37
PLN02353	473	probable UDP-glucose 6-dehydrogenase	97.32
PRK12439	341	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.29
PRK12549	284	shikimate 5-dehydrogenase; Reviewed	97.25
TIGR01921	324	DAP-DH diaminopimelate dehydrogenase. This model r	97.25
TIGR00658	304	orni_carb_tr ornithine carbamoyltransferase. Most	97.25
PRK11154	708	fadJ multifunctional fatty acid oxidation complex	97.24
COG0240	329	GpsA Glycerol-3-phosphate dehydrogenase [Energy pr	97.24
TIGR02440	699	FadJ fatty oxidation complex, alpha subunit FadJ.	97.21
PRK13301	267	putative L-aspartate dehydrogenase; Provisional	97.2
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	97.2
PRK00676	338	hemA glutamyl-tRNA reductase; Validated	97.2
PRK12548	289	shikimate 5-dehydrogenase; Provisional	97.18
PRK06718	202	precorrin-2 dehydrogenase; Reviewed	97.18
TIGR01470	205	cysG_Nterm siroheme synthase, N-terminal domain. T	97.17
PF01118	121	Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi	97.17
PRK11730	715	fadB multifunctional fatty acid oxidation complex	97.15
cd05211	217	NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of	97.12
PRK02102	331	ornithine carbamoyltransferase; Validated	97.09
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	97.09
PRK14620	326	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	97.09
PRK01713	334	ornithine carbamoyltransferase; Provisional	97.04
PTZ00117	319	malate dehydrogenase; Provisional	97.04
PRK09310	477	aroDE bifunctional 3-dehydroquinate dehydratase/sh	97.03
TIGR00670	301	asp_carb_tr aspartate carbamoyltransferase. Ornith	97.01
PLN02477	410	glutamate dehydrogenase	97.0
PRK02255	338	putrescine carbamoyltransferase; Provisional	97.0
PRK00779	304	ornithine carbamoyltransferase; Provisional	96.99
COG0373	414	HemA Glutamyl-tRNA reductase [Coenzyme metabolism]	96.98
PF01408	120	GFO_IDH_MocA: Oxidoreductase family, NAD-binding R	96.97
TIGR02441	737	fa_ox_alpha_mit fatty acid oxidation complex, alph	96.97
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	96.97
PRK09414	445	glutamate dehydrogenase; Provisional	96.95
TIGR01763	305	MalateDH_bact malate dehydrogenase, NAD-dependent.	96.95
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	96.95
PF00208	244	ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val	96.93
cd05313	254	NAD_bind_2_Glu_DH NAD(P) binding domain of glutama	96.91
TIGR02437	714	FadB fatty oxidation complex, alpha subunit FadB.	96.9
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	96.89
PRK12562	334	ornithine carbamoyltransferase subunit F; Provisio	96.89
cd00650	263	LDH_MDH_like NAD-dependent, lactate dehydrogenase-	96.88
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	96.88
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	96.81
PRK03515	336	ornithine carbamoyltransferase subunit I; Provisio	96.81
PRK04284	332	ornithine carbamoyltransferase; Provisional	96.81
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	96.8
PLN02527	306	aspartate carbamoyltransferase	96.79
PRK00856	305	pyrB aspartate carbamoyltransferase catalytic subu	96.75
PF00185	158	OTCace: Aspartate/ornithine carbamoyltransferase,	96.72
COG1250	307	FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo	96.71
PRK13303	265	L-aspartate dehydrogenase; Provisional	96.65
TIGR03316	357	ygeW probable carbamoyltransferase YgeW. Members o	96.64
PRK06719	157	precorrin-2 dehydrogenase; Validated	96.63
TIGR01809	282	Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO	96.61
COG1748	389	LYS9 Saccharopine dehydrogenase and related protei	96.6
PRK11891	429	aspartate carbamoyltransferase; Provisional	96.59
PRK14031	444	glutamate dehydrogenase; Provisional	96.58
PRK12475	338	thiamine/molybdopterin biosynthesis MoeB-like prot	96.57
PRK14030	445	glutamate dehydrogenase; Provisional	96.56
PRK01710	458	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.53
PRK04207	341	glyceraldehyde-3-phosphate dehydrogenase; Provisio	96.5
COG0026	375	PurK Phosphoribosylaminoimidazole carboxylase (NCA	96.46
PLN02342	348	ornithine carbamoyltransferase	96.45
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	96.42
PRK06223	307	malate dehydrogenase; Reviewed	96.4
PF03435	386	Saccharop_dh: Saccharopine dehydrogenase ; InterPr	96.39
smart00859	122	Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin	96.39
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	96.36
PTZ00082	321	L-lactate dehydrogenase; Provisional	96.35
PRK00048	257	dihydrodipicolinate reductase; Provisional	96.32
COG0362	473	Gnd 6-phosphogluconate dehydrogenase [Carbohydrate	96.31
PTZ00079	454	NADP-specific glutamate dehydrogenase; Provisional	96.3
PRK08192	338	aspartate carbamoyltransferase; Provisional	96.27
PF13478	136	XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2	96.25
cd00757	228	ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1	96.23
TIGR01381	664	E1_like_apg7 E1-like protein-activating enzyme Gsa	96.16
PRK08306	296	dipicolinate synthase subunit A; Reviewed	96.14
PRK08644	212	thiamine biosynthesis protein ThiF; Provisional	96.13
COG1648	210	CysG Siroheme synthase (precorrin-2 oxidase/ferroc	96.12
PF13380	116	CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5	96.11
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	96.09
COG0569	225	TrkA K+ transport systems, NAD-binding component [	96.08
PRK14106	450	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	96.07
cd05312	279	NAD_bind_1_malic_enz NAD(P) binding domain of mali	96.07
PRK13814	310	pyrB aspartate carbamoyltransferase catalytic subu	96.06
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	96.06
cd05293	312	LDH_1 A subgroup of L-lactate dehydrogenases. L-la	96.01
PRK07232	752	bifunctional malic enzyme oxidoreductase/phosphotr	96.01
PRK12862	763	malic enzyme; Reviewed	95.97
PRK14804	311	ornithine carbamoyltransferase; Provisional	95.97
PLN02819	1042	lysine-ketoglutarate reductase/saccharopine dehydr	95.94
PRK12861	764	malic enzyme; Reviewed	95.92
PRK12749	288	quinate/shikimate dehydrogenase; Reviewed	95.91
PRK07688	339	thiamine/molybdopterin biosynthesis ThiF/MoeB-like	95.91
cd00762	254	NAD_bind_malic_enz NAD(P) binding domain of malic	95.9
PRK08269	314	3-hydroxybutyryl-CoA dehydrogenase; Validated	95.87
PRK06270	341	homoserine dehydrogenase; Provisional	95.82
cd05297	423	GH4_alpha_glucosidase_galactosidase Glycoside Hydr	95.8
PRK08762	376	molybdopterin biosynthesis protein MoeB; Validated	95.8
PRK03369	488	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.76
COG3288	356	PntA NAD/NADP transhydrogenase alpha subunit [Ener	95.74
TIGR03026	411	NDP-sugDHase nucleotide sugar dehydrogenase. All o	95.69
COG0334	411	GdhA Glutamate dehydrogenase/leucine dehydrogenase	95.65
PRK14027	283	quinate/shikimate dehydrogenase; Provisional	95.65
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	95.65
PRK00683	418	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.64
cd01339	300	LDH-like_MDH L-lactate dehydrogenase-like malate d	95.61
PRK05562	223	precorrin-2 dehydrogenase; Provisional	95.6
PRK10637	457	cysG siroheme synthase; Provisional	95.58
COG0078	310	ArgF Ornithine carbamoyltransferase [Amino acid tr	95.58
cd01492	197	Aos1_SUMO Ubiquitin activating enzyme (E1) subunit	95.57
PRK05690	245	molybdopterin biosynthesis protein MoeB; Provision	95.57
PRK00066	315	ldh L-lactate dehydrogenase; Reviewed	95.55
PF02153	258	PDH: Prephenate dehydrogenase; InterPro: IPR003099	95.54
PF00056	141	Ldh_1_N: lactate/malate dehydrogenase, NAD binding	95.52
KOG2304	298	consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t	95.52
PRK06444	197	prephenate dehydrogenase; Provisional	95.51
PLN02353	473	probable UDP-glucose 6-dehydrogenase	95.51
PRK04523	335	N-acetylornithine carbamoyltransferase; Reviewed	95.5
TIGR00036	266	dapB dihydrodipicolinate reductase.	95.5
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	95.47
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	95.46
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	95.46
PRK06019	372	phosphoribosylaminoimidazole carboxylase ATPase su	95.46
PRK09496	453	trkA potassium transporter peripheral membrane com	95.46
PRK08300	302	acetaldehyde dehydrogenase; Validated	95.44
COG5322	351	Predicted dehydrogenase [General function predicti	95.42
COG0169	283	AroE Shikimate 5-dehydrogenase [Amino acid transpo	95.41
COG0771	448	MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas	95.3
cd01483	143	E1_enzyme_family Superfamily of activating enzymes	95.3
PRK06392	326	homoserine dehydrogenase; Provisional	95.27
cd05291	306	HicDH_like L-2-hydroxyisocapronate dehydrogenases	95.24
PRK02472	447	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	95.23
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	95.22
cd01487	174	E1_ThiF_like E1_ThiF_like. Member of superfamily o	95.19
TIGR02355	240	moeB molybdopterin synthase sulfurylase MoeB. This	95.13
PRK11579	346	putative oxidoreductase; Provisional	95.07
COG1004	414	Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en	95.06
cd01486	307	Apg7 Apg7 is an E1-like protein, that activates tw	95.04
PLN02520	529	bifunctional 3-dehydroquinate dehydratase/shikimat	94.99
PRK06153	393	hypothetical protein; Provisional	94.98
PRK05600	370	thiamine biosynthesis protein ThiF; Validated	94.94
PRK02006	498	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.86
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	94.84
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	94.84
cd05292	308	LDH_2 A subgroup of L-lactate dehydrogenases. L-la	94.82
COG2344	211	AT-rich DNA-binding protein [General function pred	94.81
COG0281	432	SfcA Malic enzyme [Energy production and conversio	94.76
PRK08328	231	hypothetical protein; Provisional	94.76
cd00755	231	YgdL_like Family of activating enzymes (E1) of ubi	94.75
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.74
TIGR01850	346	argC N-acetyl-gamma-glutamyl-phosphate reductase,	94.71
PRK08223	287	hypothetical protein; Validated	94.7
PF02629	96	CoA_binding: CoA binding domain; InterPro: IPR0037	94.67
PRK00421	461	murC UDP-N-acetylmuramate--L-alanine ligase; Provi	94.62
PRK15182	425	Vi polysaccharide biosynthesis protein TviB; Provi	94.6
PRK05597	355	molybdopterin biosynthesis protein MoeB; Validated	94.57
PLN02602	350	lactate dehydrogenase	94.56
PRK00141	473	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.48
PRK01390	460	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.42
cd00300	300	LDH_like L-lactate dehydrogenase-like enzymes. Mem	94.42
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	94.26
PRK04690	468	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	94.25
PLN02968	381	Probable N-acetyl-gamma-glutamyl-phosphate reducta	94.18
PRK07806	248	short chain dehydrogenase; Provisional	94.16
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	94.04
PF13460	183	NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X	94.03
KOG2711	372	consensus Glycerol-3-phosphate dehydrogenase/dihyd	94.03
PRK07411	390	hypothetical protein; Validated	94.0
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	93.96
TIGR03215	285	ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati	93.9
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	93.9
PRK06349	426	homoserine dehydrogenase; Provisional	93.89
PRK00436	343	argC N-acetyl-gamma-glutamyl-phosphate reductase;	93.89
cd01485	198	E1-1_like Ubiquitin activating enzyme (E1), repeat	93.86
PRK09496	453	trkA potassium transporter peripheral membrane com	93.85
PRK04148	134	hypothetical protein; Provisional	93.84
PRK10669	558	putative cation:proton antiport protein; Provision	93.8
PRK05086	312	malate dehydrogenase; Provisional	93.8
PRK07200	395	aspartate/ornithine carbamoyltransferase family pr	93.75
PRK12550	272	shikimate 5-dehydrogenase; Reviewed	93.73
PF04016	147	DUF364: Domain of unknown function (DUF364); Inter	93.73
PRK01368	454	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.61
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	93.58
PLN02948	577	phosphoribosylaminoimidazole carboxylase	93.57
PRK03659	601	glutathione-regulated potassium-efflux system prot	93.51
COG0673	342	MviM Predicted dehydrogenases and related proteins	93.5
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	93.5
PRK07877	722	hypothetical protein; Provisional	93.45
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	93.44
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	93.43
PRK04308	445	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.43
cd05294	309	LDH-like_MDH_nadp A lactate dehydrogenases-like st	93.36
TIGR01161	352	purK phosphoribosylaminoimidazole carboxylase, Pur	93.35
PRK12937	245	short chain dehydrogenase; Provisional	93.33
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	93.32
TIGR02717	447	AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP	93.29
PLN02586	360	probable cinnamyl alcohol dehydrogenase	93.12
PRK03803	448	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	93.1
TIGR01772	312	MDH_euk_gproteo malate dehydrogenase, NAD-dependen	93.1
PRK07231	251	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	92.97
PF05368	233	NmrA: NmrA-like family; InterPro: IPR008030 NmrA i	92.91
PRK07878	392	molybdopterin biosynthesis-like protein MoeZ; Vali	92.88
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	92.87
PF03949	255	Malic_M: Malic enzyme, NAD binding domain; InterPr	92.82
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	92.79
TIGR01761	343	thiaz-red thiazolinyl imide reductase. This reduct	92.79
PRK06701	290	short chain dehydrogenase; Provisional	92.73
TIGR01087	433	murD UDP-N-acetylmuramoylalanine--D-glutamate liga	92.72
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	92.68
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	92.66
PRK06128	300	oxidoreductase; Provisional	92.64
PLN02178	375	cinnamyl-alcohol dehydrogenase	92.61
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	92.56
PRK11863	313	N-acetyl-gamma-glutamyl-phosphate reductase; Provi	92.54
PRK03562	621	glutathione-regulated potassium-efflux system prot	92.53
PRK14805	302	ornithine carbamoyltransferase; Provisional	92.53
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	92.44
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	92.34
PRK15057	388	UDP-glucose 6-dehydrogenase; Provisional	92.24
PRK15076	431	alpha-galactosidase; Provisional	92.21
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	92.2
PLN00106	323	malate dehydrogenase	92.15
PRK10206	344	putative oxidoreductase; Provisional	92.1
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	92.07
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	92.06
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	92.06
PRK12742	237	oxidoreductase; Provisional	91.98
PRK07984	262	enoyl-(acyl carrier protein) reductase; Provisiona	91.97
TIGR01851	310	argC_other N-acetyl-gamma-glutamyl-phosphate reduc	91.96
PLN02740	381	Alcohol dehydrogenase-like	91.93
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	91.91
PRK09189	240	uroporphyrinogen-III synthase; Validated	91.83
PTZ00325	321	malate dehydrogenase; Provisional	91.83
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	91.82
PLN02514	357	cinnamyl-alcohol dehydrogenase	91.73
KOG4230	935	consensus C1-tetrahydrofolate synthase [Coenzyme t	91.72
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	91.71
cd01491	286	Ube1_repeat1 Ubiquitin activating enzyme (E1), rep	91.66
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	91.63
KOG2653	487	consensus 6-phosphogluconate dehydrogenase [Carboh	91.59
PRK02261	137	methylaspartate mutase subunit S; Provisional	91.57
PF00899	135	ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a	91.53
PLN02214	342	cinnamoyl-CoA reductase	91.52
cd01338	322	MDH_choloroplast_like Chloroplast-like malate dehy	91.52
PRK07370	258	enoyl-(acyl carrier protein) reductase; Validated	91.5
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	91.44
cd01337	310	MDH_glyoxysomal_mitochondrial Glyoxysomal and mito	91.43
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	91.42
PRK13529	563	malate dehydrogenase; Provisional	91.33
PLN03129	581	NADP-dependent malic enzyme; Provisional	91.28
PF05222	136	AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal	91.27
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	91.24
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	91.19
COG0540	316	PyrB Aspartate carbamoyltransferase, catalytic cha	91.16
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	91.15
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	91.14
PRK08374	336	homoserine dehydrogenase; Provisional	90.99
PRK02705	459	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.74
COG0039	313	Mdh Malate/lactate dehydrogenases [Energy producti	90.71
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	90.64
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	90.62
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	90.61
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	90.53
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	90.52
PRK07576	264	short chain dehydrogenase; Provisional	90.49
COG1893	307	ApbA Ketopantoate reductase [Coenzyme metabolism]	90.45
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	90.41
PRK06114	254	short chain dehydrogenase; Provisional	90.39
PRK14573	809	bifunctional D-alanyl-alanine synthetase A/UDP-N-a	90.38
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	90.37
PRK06172	253	short chain dehydrogenase; Provisional	90.35
PRK04663	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	90.32
PRK08217	253	fabG 3-ketoacyl-(acyl-carrier-protein) reductase;	90.3
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	90.29
PRK08664	349	aspartate-semialdehyde dehydrogenase; Reviewed	90.2
PLN03209	576	translocon at the inner envelope of chloroplast su	90.19
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	90.12
PRK05866	293	short chain dehydrogenase; Provisional	90.06
PRK14851	679	hypothetical protein; Provisional	90.02
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	89.96
PRK03806	438	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	89.95
PRK13376	525	pyrB bifunctional aspartate carbamoyltransferase c	89.9
KOG2741	351	consensus Dimeric dihydrodiol dehydrogenase [Carbo	89.9
PRK08324	681	short chain dehydrogenase; Validated	89.89
PRK12826	251	3-ketoacyl-(acyl-carrier-protein) reductase; Revie	89.79
PRK10083	339	putative oxidoreductase; Provisional	89.75
PRK07985	294	oxidoreductase; Provisional	89.58
cd01488	291	Uba3_RUB Ubiquitin activating enzyme (E1) subunit	89.56
PRK07523	255	gluconate 5-dehydrogenase; Provisional	89.54
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	89.52
cd01489	312	Uba2_SUMO Ubiquitin activating enzyme (E1) subunit	89.51
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	89.45
PTZ00317	559	NADP-dependent malic enzyme; Provisional	89.45
PTZ00188	506	adrenodoxin reductase; Provisional	89.36
TIGR03649	285	ergot_EASG ergot alkaloid biosynthesis protein, AF	88.96
PLN02827	378	Alcohol dehydrogenase-like	88.96
TIGR01759	323	MalateDH-SF1 malate dehydrogenase. This model repr	88.94
cd05298	437	GH4_GlvA_pagL_like Glycoside Hydrolases Family 4;	88.94
PRK08628	258	short chain dehydrogenase; Provisional	88.9
PRK07326	237	short chain dehydrogenase; Provisional	88.82
PRK06949	258	short chain dehydrogenase; Provisional	88.8
PRK08589	272	short chain dehydrogenase; Validated	88.69
PRK07239	381	bifunctional uroporphyrinogen-III synthetase/respo	88.68
PRK07109	334	short chain dehydrogenase; Provisional	88.54
PLN00112	444	malate dehydrogenase (NADP); Provisional	88.5
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	88.49
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	88.42

>PLN02306 hydroxypyruvate reductase

Probab=100.00  E-value=2.3e-69  Score=524.46  Aligned_cols=335  Identities=86%  Similarity=1.271  Sum_probs=283.0

Q ss_pred             CCCceeEEEeCCCCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHH
Q 019387            1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA   80 (342)
Q Consensus         1 ~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~   80 (342)
                      |+|+++++|.+|..+++|+++.+++++..++.|++.+++++.....+...+.+++.+.+.+++|++++...+++++++++
T Consensus         1 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~   80 (386)
T PLN02306          1 MAKPVSIEVYNPNGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFS   80 (386)
T ss_pred             CCCCceeEeeCCCCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHH
Confidence            89999999999999999999999887545678877777886543333346889998887545999998877789999999


Q ss_pred             HhhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc
Q 019387           81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (342)
Q Consensus        81 ~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~  160 (342)
                      +++++++|+|++.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|.+|.+....|
T Consensus        81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g  160 (386)
T PLN02306         81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG  160 (386)
T ss_pred             hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence            99986679999999999999999999999999999999999999999999999999999999999999998886544457


Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+|.||||||||+|+||+.+|++++++|||+|++||++.....+.+...++......+..+..+....+|++++++||+|
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV  240 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVI  240 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEE
Confidence            89999999999999999999999634999999999998754322211111100111111111122236899999999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCcccccc
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKH  311 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPh  311 (342)
                      ++|+|+|++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||         ||+++|||
T Consensus       241 ~lh~Plt~~T~~lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~~~~L~~~pNVilTPH  320 (386)
T PLN02306        241 SLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYMKPGLADMKNAVVVPH  320 (386)
T ss_pred             EEeCCCChhhhhhcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCCcchHhhCCCEEECCc
Confidence            999999999999999999999999999999999999999999999999999999999999998         79999999


Q ss_pred             ccccccccccccccCchhhccccccc
Q 019387          312 ISTQDRATSCPKLTREWPIYDNSCCI  337 (342)
Q Consensus       312 ia~~~~~~~~~~~~~~~~~~~~~~~~  337 (342)
                      +|++|.+..  ..+.++.++|...++
T Consensus       321 iag~T~e~~--~~~~~~~~~ni~~~~  344 (386)
T PLN02306        321 IASASKWTR--EGMATLAALNVLGKL  344 (386)
T ss_pred             cccCcHHHH--HHHHHHHHHHHHHHH
Confidence            999998754  666677777776654

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=9.1e-66  Score=488.30  Aligned_cols=298  Identities=37%  Similarity=0.514  Sum_probs=258.3

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~   94 (342)
                      ++.++.+.+++++. ++.+.+. ++++........ .. ++.+... ++|++++....+++.++++++|++  |+|+..|
T Consensus         2 k~~~~~~~~~~~~~-~~~l~~~-~~~~~~~~~~~~-~~-~~~~~~~-~~~~i~~~~~~~i~~~~l~~~p~L--KlIa~~~   74 (324)
T COG1052           2 KIVVLSTRKLPPEV-LERLKEK-FEVERYEDDLTP-DT-ELAERLK-DADAVITFVNDRIDAEVLEKLPGL--KLIATRS   74 (324)
T ss_pred             CcEEEecCcCCHHH-HHHhhcc-EEEEEeccCCcc-ch-HHHHHhc-CCcEEEEcCCCCcCHHHHHhCCCc--EEEEEec
Confidence            45688888888864 5677655 677765433222 22 5566666 499999998889999999999987  9999999


Q ss_pred             ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCC-CCcccccccCCCeEEEEec
Q 019387           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL-PNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~-~~~~~~~~L~gktvgIvG~  173 (342)
                      +||||||+++|+++||.|+|+|++++++||||+++++|++.|++.++++++|+|.|..|. +....|.+++|||+||+|+
T Consensus        75 ~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~  154 (324)
T COG1052          75 AGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGL  154 (324)
T ss_pred             cccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECC
Confidence            999999999999999999999999999999999999999999999999999999998763 3345678999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019387          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (342)
Q Consensus       174 G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~l  253 (342)
                      |+||+++|+++ ++|||+|++||+++.+..++.               ..+ .+.++++++++||+|++|||+|++|+|+
T Consensus       155 GrIG~avA~r~-~~Fgm~v~y~~~~~~~~~~~~---------------~~~-~y~~l~ell~~sDii~l~~Plt~~T~hL  217 (324)
T COG1052         155 GRIGQAVARRL-KGFGMKVLYYDRSPNPEAEKE---------------LGA-RYVDLDELLAESDIISLHCPLTPETRHL  217 (324)
T ss_pred             CHHHHHHHHHH-hcCCCEEEEECCCCChHHHhh---------------cCc-eeccHHHHHHhCCEEEEeCCCChHHhhh
Confidence            99999999996 799999999999975322210               112 2345999999999999999999999999


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-------------CCccccccccccccccc
Q 019387          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-------------LGFSSFKHISTQDRATS  320 (342)
Q Consensus       254 i~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-------------~~~~~tPhia~~~~~~~  320 (342)
                      ||++.|++||+|++|||+|||++||++||++||++|+|+||||||||.||             ||+++|||+|++|.++.
T Consensus       218 in~~~l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~  297 (324)
T COG1052         218 INAEELAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEAR  297 (324)
T ss_pred             cCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHH
Confidence            99999999999999999999999999999999999999999999999999             44999999999999877


Q ss_pred             cccccCchhhcccccccc
Q 019387          321 CPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~  338 (342)
                        ..|.+-.++|..++++
T Consensus       298 --~~m~~~~~~nl~~~~~  313 (324)
T COG1052         298 --KAMAELALENLEAFFD  313 (324)
T ss_pred             --HHHHHHHHHHHHHHHc
Confidence              8888888888887764

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=100.00  E-value=6.5e-66  Score=489.70  Aligned_cols=296  Identities=35%  Similarity=0.450  Sum_probs=258.6

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEc
Q 019387           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        14 ~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~   93 (342)
                      .+++++.+.++.++. ++.+++. .++++..  ....+.+++.+.+.+ +|++++ ...++++++++.+++|  |+|++.
T Consensus         2 ~~~~vl~~~~~~~~~-~~~l~~~-~~~~~~~--~~~~~~~~l~~~~~~-~d~~~~-~~~~v~~~~l~~~~~L--k~I~~~   73 (324)
T COG0111           2 MMIKVLVTDPLAPDA-LEELLAA-YDVEVPD--GPDLDEEELLEALAD-ADALIV-SVTPVTEEVLAAAPNL--KAIGRA   73 (324)
T ss_pred             CcceeeccCccCHHH-HHHHHhc-ccccccc--ccccchHHHHhhccc-CcEEEE-ecCCCCHHHHhhCCCc--eEEEEc
Confidence            578899999999865 5666554 4444332  234567778888875 999888 6678999999999987  999999


Q ss_pred             cccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEec
Q 019387           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        94 ~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~  173 (342)
                      |+|+|+||+++++++||.|+|+|+.|+.+||||+++++|++.|+++.+++.+++|.|++   ..+.|.+|+||||||||+
T Consensus        74 g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~---~~~~g~el~gkTvGIiG~  150 (324)
T COG0111          74 GAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDR---KAFRGTELAGKTVGIIGL  150 (324)
T ss_pred             cccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccc---cccccccccCCEEEEECC
Confidence            99999999999999999999999999999999999999999999999999999999875   445678999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019387          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (342)
Q Consensus       174 G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~l  253 (342)
                      |+||+.+|+++ ++|||+|++||++.....+.               ..+....++|+++|++||||++|+|+|++|+||
T Consensus       151 G~IG~~va~~l-~afgm~v~~~d~~~~~~~~~---------------~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~  214 (324)
T COG0111         151 GRIGRAVAKRL-KAFGMKVIGYDPYSPRERAG---------------VDGVVGVDSLDELLAEADILTLHLPLTPETRGL  214 (324)
T ss_pred             CHHHHHHHHHH-HhCCCeEEEECCCCchhhhc---------------cccceecccHHHHHhhCCEEEEcCCCCcchhcc
Confidence            99999999996 89999999999976542111               112334578999999999999999999999999


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCcccccccccccccccccc
Q 019387          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSCPK  323 (342)
Q Consensus       254 i~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~~~  323 (342)
                      ||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||          ||+++|||+|+.|.++.  .
T Consensus       215 i~~~~~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~--~  292 (324)
T COG0111         215 INAEELAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQ--E  292 (324)
T ss_pred             cCHHHHhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHH--H
Confidence            99999999999999999999999999999999999999999999999998          89999999999999844  7


Q ss_pred             ccCchhhcccccccc
Q 019387          324 LTREWPIYDNSCCIR  338 (342)
Q Consensus       324 ~~~~~~~~~~~~~~~  338 (342)
                      ....+.++|...+++
T Consensus       293 ~~~~~~~~~i~~~l~  307 (324)
T COG0111         293 RVAEIVAENIVRYLA  307 (324)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            888888888876654

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=100.00  E-value=1.1e-64  Score=482.67  Aligned_cols=298  Identities=31%  Similarity=0.461  Sum_probs=255.6

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~   94 (342)
                      +++||++.+++++ .++.|++. +++.... .....+.+++.+.+.+ +|++++.. .++++++++++|+|  |+|++.|
T Consensus         2 ~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~-~~~~~~~~~~~~~~~~-ad~li~~~-~~~~~~~l~~~p~L--k~I~~~g   74 (323)
T PRK15409          2 KPSVILYKALPDD-LLQRLEEH-FTVTQVA-NLSPETVEQHAAAFAE-AEGLLGSG-EKVDAALLEKMPKL--RAASTIS   74 (323)
T ss_pred             CceEEEeCCCCHH-HHHHHHhc-CcEEEcC-CCCCCCHHHHHHHhcC-CeEEEEcC-CCCCHHHHhhCCCC--eEEEECc
Confidence            4789999988754 46777664 5665432 1223467788888875 99999764 47999999999987  9999999


Q ss_pred             ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC
Q 019387           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (342)
Q Consensus        95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G  174 (342)
                      +|+|+||+++|+++||.|+|+|++++++||||++++||+++|++..+++.+++|.|..+......|.+|+|||+||||+|
T Consensus        75 ~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G  154 (323)
T PRK15409         75 VGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMG  154 (323)
T ss_pred             eecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEccc
Confidence            99999999999999999999999999999999999999999999999999999998654322235789999999999999


Q ss_pred             HHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019387          175 RIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (342)
Q Consensus       175 ~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~l  253 (342)
                      +||+.+|+++ + +|||+|++||++.......               ..+. ...++++++++||+|++|+|+|++|+++
T Consensus       155 ~IG~~va~~l-~~~fgm~V~~~~~~~~~~~~~---------------~~~~-~~~~l~ell~~sDvv~lh~plt~~T~~l  217 (323)
T PRK15409        155 RIGMALAQRA-HFGFNMPILYNARRHHKEAEE---------------RFNA-RYCDLDTLLQESDFVCIILPLTDETHHL  217 (323)
T ss_pred             HHHHHHHHHH-HhcCCCEEEEECCCCchhhHH---------------hcCc-EecCHHHHHHhCCEEEEeCCCChHHhhc
Confidence            9999999996 7 9999999999875332110               0011 2369999999999999999999999999


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCcccccccccccccccccc
Q 019387          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSCPK  323 (342)
Q Consensus       254 i~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~~~  323 (342)
                      ||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||          ||+++|||+|+.|.+..  .
T Consensus       218 i~~~~l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~--~  295 (323)
T PRK15409        218 FGAEQFAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETR--Y  295 (323)
T ss_pred             cCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHH--H
Confidence            99999999999999999999999999999999999999999999999998          79999999999998865  6


Q ss_pred             ccCchhhcccccccc
Q 019387          324 LTREWPIYDNSCCIR  338 (342)
Q Consensus       324 ~~~~~~~~~~~~~~~  338 (342)
                      .+.+..++|...+++
T Consensus       296 ~~~~~~~~ni~~~~~  310 (323)
T PRK15409        296 NMAACAVDNLIDALQ  310 (323)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            777888888877764

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-63  Score=472.95  Aligned_cols=289  Identities=27%  Similarity=0.378  Sum_probs=246.1

Q ss_pred             EEEEeCC--CCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387           17 RVVSTKP--MPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        17 ~vl~~~~--~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~   94 (342)
                      ||++..+  +++ ..++.|++.+ ++....    ..+++++.+.+.+ +|+++++ ..++++++++++|++  |+|++.|
T Consensus         2 ki~~~~~~~~~~-~~~~~l~~~~-~~~~~~----~~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~   71 (311)
T PRK08410          2 KIVILDAKTLGD-KDLSVFEEFG-DFQIYP----TTSPEEVIERIKD-ANIIITN-KVVIDKEVLSQLPNL--KLICITA   71 (311)
T ss_pred             eEEEEecCCCCh-hhHHHHhhCc-eEEEeC----CCCHHHHHHHhCC-CCEEEEC-CCCCCHHHHhhCCCC--eEEEEcc
Confidence            4554444  443 3456776653 665432    1256788888875 9999886 457999999999987  9999999


Q ss_pred             ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCc---ccccccCCCeEEEE
Q 019387           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL---FVGNLLKGQTVGVI  171 (342)
Q Consensus        95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~---~~~~~L~gktvgIv  171 (342)
                      +|+|+||+++|+++||.|+|+|++++++||||+++++|+++|++..+++.+++|.|..+....   ..+++|+|||||||
T Consensus        72 ~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIi  151 (311)
T PRK08410         72 TGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGII  151 (311)
T ss_pred             cccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEE
Confidence            999999999999999999999999999999999999999999999999999999987542211   12478999999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019387          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~  251 (342)
                      |+|+||+++|+++ ++|||+|++||++....                  ...+ ...+|++++++||+|++|+|+|++|+
T Consensus       152 G~G~IG~~vA~~~-~~fgm~V~~~d~~~~~~------------------~~~~-~~~~l~ell~~sDvv~lh~Plt~~T~  211 (311)
T PRK08410        152 GLGTIGKRVAKIA-QAFGAKVVYYSTSGKNK------------------NEEY-ERVSLEELLKTSDIISIHAPLNEKTK  211 (311)
T ss_pred             CCCHHHHHHHHHH-hhcCCEEEEECCCcccc------------------ccCc-eeecHHHHhhcCCEEEEeCCCCchhh
Confidence            9999999999996 89999999999975321                  0011 24689999999999999999999999


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-------------CCccccccccccccc
Q 019387          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-------------LGFSSFKHISTQDRA  318 (342)
Q Consensus       252 ~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-------------~~~~~tPhia~~~~~  318 (342)
                      |+||++.|++||||++|||+|||++||++||++||++|+|+ ||||||++||             ||+++|||+|++|.+
T Consensus       212 ~li~~~~~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e  290 (311)
T PRK08410        212 NLIAYKELKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKE  290 (311)
T ss_pred             cccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHH
Confidence            99999999999999999999999999999999999999999 9999999999             489999999999988


Q ss_pred             cccccccCchhhcccccccc
Q 019387          319 TSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~  338 (342)
                      ..  ..+.++.++|...+++
T Consensus       291 ~~--~~~~~~~~~nl~~~~~  308 (311)
T PRK08410        291 AR--KTLIEKVKENIKDFLE  308 (311)
T ss_pred             HH--HHHHHHHHHHHHHHHc
Confidence            65  7778888888877764

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.2e-62  Score=482.49  Aligned_cols=299  Identities=27%  Similarity=0.318  Sum_probs=260.5

Q ss_pred             EeCCCCceEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCC
Q 019387            9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG   87 (342)
Q Consensus         9 ~~~~~~~~~vl~~~~~~~~~~~~~l~~~~~-~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~   87 (342)
                      ++.|+.+|+|+++.+++++ ..+.|++.++ ++....   ...+++++.+.+.+ +|+++.....++++++++++|+|  
T Consensus         4 ~~~~~~~~~ili~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~~~~~~~~-~d~l~~~~~~~~~~~~l~~~~~L--   76 (409)
T PRK11790          4 VSLPKDKIKFLLLEGVHQS-AVEVLRAAGYTNIEYHK---GALDEEELIEAIKD-AHFIGIRSRTQLTEEVLAAAEKL--   76 (409)
T ss_pred             CCCCCCCeEEEEECCCCHH-HHHHHHhcCCceEEECC---CCCCHHHHHHHcCC-CCEEEEeCCCCCCHHHHhhCCCC--
Confidence            5678999999999888764 4677877666 776432   23577888888875 99988776668999999999987  


Q ss_pred             ceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCe
Q 019387           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (342)
Q Consensus        88 k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gkt  167 (342)
                      |+|++.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|..+.   ..|.+|.|||
T Consensus        77 k~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~---~~~~~L~gkt  153 (409)
T PRK11790         77 VAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSA---AGSFEVRGKT  153 (409)
T ss_pred             eEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccc---cCcccCCCCE
Confidence            9999999999999999999999999999999999999999999999999999999999999886432   3468999999


Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 019387          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (342)
Q Consensus       168 vgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~  247 (342)
                      |||||+|+||+.+|+++ ++|||+|++||+++....                  .......+|++++++||+|++|+|+|
T Consensus       154 vGIiG~G~IG~~vA~~~-~~fGm~V~~~d~~~~~~~------------------~~~~~~~~l~ell~~sDiVslh~Plt  214 (409)
T PRK11790        154 LGIVGYGHIGTQLSVLA-ESLGMRVYFYDIEDKLPL------------------GNARQVGSLEELLAQSDVVSLHVPET  214 (409)
T ss_pred             EEEECCCHHHHHHHHHH-HHCCCEEEEECCCccccc------------------CCceecCCHHHHHhhCCEEEEcCCCC
Confidence            99999999999999996 899999999998643210                  01123468999999999999999999


Q ss_pred             cccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--------------CCcccccccc
Q 019387          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--------------LGFSSFKHIS  313 (342)
Q Consensus       248 ~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--------------~~~~~tPhia  313 (342)
                      ++|+|+||++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||              ||+++|||+|
T Consensus       215 ~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia  294 (409)
T PRK11790        215 PSTKNMIGAEELALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIG  294 (409)
T ss_pred             hHHhhccCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCC
Confidence            99999999999999999999999999999999999999999999999999999997              6899999999


Q ss_pred             ccccccccccccCchhhcccccccc
Q 019387          314 TQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      ++|.+..  ..+.++.++|...+++
T Consensus       295 ~~t~ea~--~~~~~~~~~nl~~~~~  317 (409)
T PRK11790        295 GSTQEAQ--ENIGLEVAGKLVKYSD  317 (409)
T ss_pred             CCHHHHH--HHHHHHHHHHHHHHHc
Confidence            9998855  6677788888766653

>PRK06487 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1e-62  Score=468.73  Aligned_cols=277  Identities=26%  Similarity=0.313  Sum_probs=241.2

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCC
Q 019387           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYG  109 (342)
Q Consensus        30 ~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~g  109 (342)
                      .+.|++..++++...    ..+.+++.+.+.+ +|+++.+ ..++++++++++|++  |+|++.|+|+|+||+++++++|
T Consensus        18 ~~~l~~~~~~~~~~~----~~~~~~~~~~~~~-~d~~i~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~g   89 (317)
T PRK06487         18 LSPLEQAFDELQLHD----ATTPEQVAERLRG-AQVAISN-KVALDAAALAAAPQL--KLILVAATGTNNVDLAAARERG   89 (317)
T ss_pred             hhHHHhhCCeEEEec----CCCHHHHHHHhCC-CeEEEEe-CCCCCHHHHhhCCCC--eEEEEcCccccccCHHHHHHCC
Confidence            456665555665432    2356888888875 9998876 347899999999987  9999999999999999999999


Q ss_pred             eeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCC---cccccccCCCeEEEEecCHHHHHHHHHHHh
Q 019387          110 IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       110 I~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~---~~~~~~L~gktvgIvG~G~IG~~vA~~l~~  186 (342)
                      |.|+|+|++++.+||||++++||+++|++..+++.+++|.|..|...   ...+.+|+||||||||+|+||+.+|+++ +
T Consensus        90 I~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~vA~~l-~  168 (317)
T PRK06487         90 ITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLA-E  168 (317)
T ss_pred             CEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHHHHHHHHHH-h
Confidence            99999999999999999999999999999999999999999765321   1235689999999999999999999996 8


Q ss_pred             cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCc
Q 019387          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (342)
Q Consensus       187 afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga  266 (342)
                      +|||+|++||++....                  .   ....+|++++++||+|++|+|+|++|+|+||++.|++||+|+
T Consensus       169 ~fgm~V~~~~~~~~~~------------------~---~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga  227 (317)
T PRK06487        169 AFGMRVLIGQLPGRPA------------------R---PDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGA  227 (317)
T ss_pred             hCCCEEEEECCCCCcc------------------c---ccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCe
Confidence            9999999999864210                  0   023589999999999999999999999999999999999999


Q ss_pred             EEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC------------CCccccccccccccccccccccCchhhcccc
Q 019387          267 ILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE------------LGFSSFKHISTQDRATSCPKLTREWPIYDNS  334 (342)
Q Consensus       267 ~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP------------~~~~~tPhia~~~~~~~~~~~~~~~~~~~~~  334 (342)
                      +|||+|||++||++||++||++|+|+||+||||++||            ||+++|||+|++|.+..  ..+.++.++|..
T Consensus       228 ~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~--~~~~~~~~~ni~  305 (317)
T PRK06487        228 LLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREAR--QRIVGQLAENAR  305 (317)
T ss_pred             EEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHH--HHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999            58899999999998865  777788888877


Q ss_pred             cccc
Q 019387          335 CCIR  338 (342)
Q Consensus       335 ~~~~  338 (342)
                      .+++
T Consensus       306 ~~~~  309 (317)
T PRK06487        306 AFFA  309 (317)
T ss_pred             HHHc
Confidence            7654

>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]

Probab=100.00  E-value=8.6e-63  Score=453.70  Aligned_cols=277  Identities=32%  Similarity=0.479  Sum_probs=251.3

Q ss_pred             EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcccc
Q 019387           17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (342)
Q Consensus        17 ~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G   96 (342)
                      +||++.++.... ++.|++.++++++..    .++.||+...+++ +|++++++.+++++++|+.... ++|+|++.|+|
T Consensus         8 ~il~~e~~~~~~-~~~l~~~g~~v~~~~----~~~~eel~~~i~~-~~aviVrs~tkvtadvl~aa~~-~lkvVgrag~G   80 (406)
T KOG0068|consen    8 KILVAESLDQAC-IEILKDNGYQVEFKK----NLSLEELIEKIKD-CDALIVRSKTKVTADVLEAAAG-GLKVVGRAGIG   80 (406)
T ss_pred             eEEEecccchHH-HHHHHhcCceEEEec----cCCHHHHHHHhcc-CCEEEEEeCCeecHHHHHhhcC-CeEEEEecccC
Confidence            799999999864 899999999998643    3578899999985 9999999999999999985333 46999999999


Q ss_pred             CCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHH
Q 019387           97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI  176 (342)
Q Consensus        97 ~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~I  176 (342)
                      +||+|++++.++||.|+|+|.+|+.++||+++++++++.|+++++...+|+|.|.+   ..+.|.+|+|||+||+|+|+|
T Consensus        81 ~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr---~~~~G~el~GKTLgvlG~GrI  157 (406)
T KOG0068|consen   81 VDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNR---VKYLGWELRGKTLGVLGLGRI  157 (406)
T ss_pred             ccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceee---cceeeeEEeccEEEEeecccc
Confidence            99999999999999999999999999999999999999999999999999998764   557899999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019387          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (342)
Q Consensus       177 G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~  256 (342)
                      |+++|+++ +++||+|++||+........          ..+     + ...+++|+++.||||++|+|++|+|++++|+
T Consensus       158 GseVA~r~-k~~gm~vI~~dpi~~~~~~~----------a~g-----v-q~vsl~Eil~~ADFitlH~PLtP~T~~lin~  220 (406)
T KOG0068|consen  158 GSEVAVRA-KAMGMHVIGYDPITPMALAE----------AFG-----V-QLVSLEEILPKADFITLHVPLTPSTEKLLND  220 (406)
T ss_pred             hHHHHHHH-HhcCceEEeecCCCchHHHH----------hcc-----c-eeeeHHHHHhhcCEEEEccCCCcchhhccCH
Confidence            99999996 99999999999987543211          111     1 2469999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC------------CCccccccccccccccc
Q 019387          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE------------LGFSSFKHISTQDRATS  320 (342)
Q Consensus       257 ~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP------------~~~~~tPhia~~~~~~~  320 (342)
                      +.|++||+|..+||++||++||+.||++||++|+++|||+|||+.||            ||++.|||+++.|.|..
T Consensus       221 ~tfA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq  296 (406)
T KOG0068|consen  221 ETFAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQ  296 (406)
T ss_pred             HHHHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHH
Confidence            99999999999999999999999999999999999999999999999            78999999999998764

>PRK06932 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=1.6e-62  Score=466.70  Aligned_cols=262  Identities=27%  Similarity=0.343  Sum_probs=233.1

Q ss_pred             CCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHH
Q 019387           50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS  129 (342)
Q Consensus        50 ~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~  129 (342)
                      .+++++.+.+.+ +|++++. ..++++++++++|+|  |+|++.|+|+|+||+++|+++||.|+|+|++++.+||||+++
T Consensus        33 ~~~~~~~~~~~~-~d~ii~~-~~~~~~~~l~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~  108 (314)
T PRK06932         33 TSAEQTIERAKD-ADIVITS-KVLFTRETLAQLPKL--KLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLG  108 (314)
T ss_pred             CChHHHHHHhCC-CcEEEEe-CCCCCHHHHhhCcCC--eEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHH
Confidence            367888888875 9988875 457899999999987  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchHHHHHHHHcCCCCCCCCC---cccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH
Q 019387          130 LSLAAARRIVEADEFMRAGLYDGWLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF  206 (342)
Q Consensus       130 ~~L~~~R~~~~~~~~~~~g~w~~w~~~---~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~  206 (342)
                      ++|++.|+++.+++.+++|.|..+...   ...+.+|+||||||||+|+||+++|+++ ++|||+|++||++....    
T Consensus       109 l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l-~~fg~~V~~~~~~~~~~----  183 (314)
T PRK06932        109 MIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLA-QALGMKVLYAEHKGASV----  183 (314)
T ss_pred             HHHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHH-hcCCCEEEEECCCcccc----
Confidence            999999999999999999998754221   1234689999999999999999999996 89999999999754210    


Q ss_pred             HhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387          207 VTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       207 ~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL  286 (342)
                                     . .....+|++++++||+|++|+|+|++|+|+||++.|++||+|++|||+|||++||++||++||
T Consensus       184 ---------------~-~~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL  247 (314)
T PRK06932        184 ---------------C-REGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDAL  247 (314)
T ss_pred             ---------------c-ccccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHH
Confidence                           0 002368999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCceEEEEecCCCCC--------------CCccccccccccccccccccccCchhhcccccccc
Q 019387          287 KQNPMFRVGLDVFEVTE--------------LGFSSFKHISTQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       287 ~~g~i~~aaLDV~~~EP--------------~~~~~tPhia~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      ++|+|+||+||||++||              ||+++|||+|++|.+..  ..+.++.++|...+++
T Consensus       248 ~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~--~~~~~~~~~ni~~~~~  311 (314)
T PRK06932        248 ENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAV--TTLVNKVAQNIEEFVQ  311 (314)
T ss_pred             HcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHH--HHHHHHHHHHHHHHHh
Confidence            99999999999999999              57899999999998855  7788888888877664

>PRK13243 glyoxylate reductase; Reviewed

Probab=100.00  E-value=2.5e-61  Score=462.20  Aligned_cols=299  Identities=40%  Similarity=0.593  Sum_probs=255.4

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~   94 (342)
                      +++|+++.++++ ..++.|++. +++.... .....+.+++.+.+.+ +|++++....++++++++++|+|  |+|++.|
T Consensus         2 ~~kil~~~~~~~-~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~p~L--k~I~~~~   75 (333)
T PRK13243          2 KPKVFITREIPE-NGIEMLEEH-FEVEVWE-DEREIPREVLLEKVRD-VDALVTMLSERIDCEVFEAAPRL--RIVANYA   75 (333)
T ss_pred             CceEEEECCCCH-HHHHHHhcC-ceEEEec-CCCCCCHHHHHHHhCC-CcEEEEeCCCCCCHHHHhhCCCC--eEEEecC
Confidence            467888887765 346677664 4665432 2223467888888875 99999876668999999999987  9999999


Q ss_pred             ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCC----CCCCcccccccCCCeEEE
Q 019387           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG----WLPNLFVGNLLKGQTVGV  170 (342)
Q Consensus        95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~----w~~~~~~~~~L~gktvgI  170 (342)
                      +|+|+||+++|+++||.|+|+||+++.+||||++++||++.|+++.+++.+++|.|..    |......|.+|+||||||
T Consensus        76 ~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgI  155 (333)
T PRK13243         76 VGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGI  155 (333)
T ss_pred             ccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEE
Confidence            9999999999999999999999999999999999999999999999999999999864    222223568999999999


Q ss_pred             EecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019387          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 vG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t  250 (342)
                      ||+|+||+.+|++| ++|||+|++||+++......   .            .++ ...++++++++||+|++|+|+|++|
T Consensus       156 iG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~------------~~~-~~~~l~ell~~aDiV~l~lP~t~~T  218 (333)
T PRK13243        156 IGFGRIGQAVARRA-KGFGMRILYYSRTRKPEAEK---E------------LGA-EYRPLEELLRESDFVSLHVPLTKET  218 (333)
T ss_pred             ECcCHHHHHHHHHH-HHCCCEEEEECCCCChhhHH---H------------cCC-EecCHHHHHhhCCEEEEeCCCChHH
Confidence            99999999999997 79999999999986432110   0            011 2358999999999999999999999


Q ss_pred             ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCcccccccccccccccc
Q 019387          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRATSC  321 (342)
Q Consensus       251 ~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~~~  321 (342)
                      +++|+++.|++||+|++|||+|||++||++||+++|++|+|+||+||||++||         ||+++|||+|++|.+.. 
T Consensus       219 ~~~i~~~~~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~~~pL~~~~nvilTPHia~~t~e~~-  297 (333)
T PRK13243        219 YHMINEERLKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYYNEELFSLKNVVLAPHIGSATFEAR-  297 (333)
T ss_pred             hhccCHHHHhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCCCchhhcCCCEEECCcCCcCHHHHH-
Confidence            99999999999999999999999999999999999999999999999999999         79999999999998865 


Q ss_pred             ccccCchhhcccccccc
Q 019387          322 PKLTREWPIYDNSCCIR  338 (342)
Q Consensus       322 ~~~~~~~~~~~~~~~~~  338 (342)
                       ..+.++.++|...+++
T Consensus       298 -~~~~~~~~~ni~~~~~  313 (333)
T PRK13243        298 -EGMAELVAENLIAFKR  313 (333)
T ss_pred             -HHHHHHHHHHHHHHHc
Confidence             6677778888776654

>PRK07574 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.4e-59  Score=455.04  Aligned_cols=285  Identities=24%  Similarity=0.257  Sum_probs=247.3

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecC--CCCccHHHHHHhhccCCceEEEccccCCccChhHHHhC
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY  108 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~--~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~  108 (342)
                      +.|++.++++.+..  +...+.+++.+.+.+ +|++++..  ..++++++++++|+|  |+|++.|+|+|+||+++|.++
T Consensus        62 ~~l~~~g~e~~~~~--~~~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~~p~L--K~I~~~g~G~D~id~~aa~~~  136 (385)
T PRK07574         62 KFLEERGHELVVTS--DKDGPDSDFEKELPD-ADVVISQPFWPAYLTAERIAKAPNL--KLAITAGIGSDHVDLQAASEH  136 (385)
T ss_pred             HHHHhcCcEEEEeC--CCCCCHHHHHHHcCC-CeEEEEecCCCCCCCHHHHhhCCCC--cEEEECCcccccccHHHHHHC
Confidence            56778888887653  334577888888875 99999863  357899999999987  999999999999999999999


Q ss_pred             CeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcC
Q 019387          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (342)
Q Consensus       109 gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~af  188 (342)
                      ||.|+|++++|+.+||||++++||++.|++..+++.+++|.|..+.. ...+++|+|+||||||+|+||+.+|++| ++|
T Consensus       137 gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~-~~~~~~L~gktVGIvG~G~IG~~vA~~l-~~f  214 (385)
T PRK07574        137 GITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADC-VSRSYDLEGMTVGIVGAGRIGLAVLRRL-KPF  214 (385)
T ss_pred             CcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccc-cccceecCCCEEEEECCCHHHHHHHHHH-HhC
Confidence            99999999999999999999999999999999999999999875321 1246789999999999999999999997 799


Q ss_pred             CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEE
Q 019387          189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL  268 (342)
Q Consensus       189 g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~l  268 (342)
                      ||+|++||++.......  .            ..+.....++++++++||+|++|+|+|++|+++||++.|++||+|++|
T Consensus       215 G~~V~~~dr~~~~~~~~--~------------~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l  280 (385)
T PRK07574        215 DVKLHYTDRHRLPEEVE--Q------------ELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYL  280 (385)
T ss_pred             CCEEEEECCCCCchhhH--h------------hcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEE
Confidence            99999999986321100  0            011223468999999999999999999999999999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccccccccccccccccCchhhcccccccc
Q 019387          269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       269 INvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      ||+|||++||++||++||++|+|+|||||||++||          ||+++|||+|+.|.+..  ..+.+..++|..++++
T Consensus       281 IN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~--~~~~~~~~~ni~~~~~  358 (385)
T PRK07574        281 VNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQ--ARYAAGTREILECFFE  358 (385)
T ss_pred             EECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHH--HHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999          79999999999998865  6677788888877754

>PLN03139 formate dehydrogenase; Provisional

Probab=100.00  E-value=1.7e-59  Score=454.27  Aligned_cols=285  Identities=21%  Similarity=0.221  Sum_probs=246.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecC--CCCccHHHHHHhhccCCceEEEccccCCccChhHHHhC
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKY  108 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~--~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~  108 (342)
                      +.|++.++++.+...  ...+.+++.+.+.+ +|++|+..  ..++++++++++|+|  |+|++.|+|+||||+++|.++
T Consensus        69 ~~l~~~g~~~v~~~~--~~~~~~~~~~~l~d-adili~~~~~~~~~~~e~l~~ap~L--K~I~~~g~G~D~iDl~aa~~~  143 (386)
T PLN03139         69 DWLESQGHQYIVTDD--KEGPDCELEKHIPD-LHVLITTPFHPAYVTAERIKKAKNL--ELLLTAGIGSDHIDLPAAAAA  143 (386)
T ss_pred             HHHHhcCCeEEEeCC--CCCCHHHHHHHhCC-CeEEEEcCccCCCCCHHHHhhCCCc--cEEEECCccccccCHHHHHHC
Confidence            567778888876543  23577888888885 99999864  246899999999988  999999999999999999999


Q ss_pred             CeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcC
Q 019387          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (342)
Q Consensus       109 gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~af  188 (342)
                      ||.|+|++|+|+.+||||++++||++.|++..+++.+++|.|... .....+++|.||||||||+|+||+.+|++| ++|
T Consensus       144 gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~-~~~~~~~~L~gktVGIVG~G~IG~~vA~~L-~af  221 (386)
T PLN03139        144 GLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVA-GIAYRAYDLEGKTVGTVGAGRIGRLLLQRL-KPF  221 (386)
T ss_pred             CeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccc-cccCCCcCCCCCEEEEEeecHHHHHHHHHH-HHC
Confidence            999999999999999999999999999999999999999988631 112346799999999999999999999997 799


Q ss_pred             CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEE
Q 019387          189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL  268 (342)
Q Consensus       189 g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~l  268 (342)
                      ||+|++||++.......  .            ..++....++++++++||+|++|+|++++|+++||++.|++||+|++|
T Consensus       222 G~~V~~~d~~~~~~~~~--~------------~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~l  287 (386)
T PLN03139        222 NCNLLYHDRLKMDPELE--K------------ETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLI  287 (386)
T ss_pred             CCEEEEECCCCcchhhH--h------------hcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEE
Confidence            99999999875321100  0            011223468999999999999999999999999999999999999999


Q ss_pred             EEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccccccccccccccccCchhhcccccccc
Q 019387          269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       269 INvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      ||+|||++||++||++||++|+|+||+||||++||          ||+++|||+|+.|.+..  ..+.+..++|..+|++
T Consensus       288 IN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~--~r~~~~~~~nl~~~~~  365 (386)
T PLN03139        288 VNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQ--LRYAAGVKDMLDRYFK  365 (386)
T ss_pred             EECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHH--HHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999          79999999999998855  6777778888877753

>PLN02928 oxidoreductase family protein

Probab=100.00  E-value=5.5e-59  Score=447.86  Aligned_cols=305  Identities=23%  Similarity=0.238  Sum_probs=248.4

Q ss_pred             CCCCceEEEEeCCCCchH--H-HHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCC
Q 019387           11 NPNGKYRVVSTKPMPGTR--W-INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG   87 (342)
Q Consensus        11 ~~~~~~~vl~~~~~~~~~--~-~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~   87 (342)
                      ..+++++||++.+..+..  + .+.+++.+ .+. ..    ..+.+++.+.+.+ +|+++++. .++++++++.+|++  
T Consensus        14 ~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~-~~----~~~~~e~~~~~~~-~d~~i~~~-~~~~~~~l~~~~~L--   83 (347)
T PLN02928         14 SDMRPTRVLFCGPEFPASYSYTREYLQKYP-FIQ-VD----AVAREDVPDVIAN-YDICVPKM-MRLDADIIARASQM--   83 (347)
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHhhcCC-eeE-ec----CCCHHHHHHHhcC-CcEEEECC-CCCCHHHHhcCCCc--
Confidence            457888999997776632  2 24444333 222 22    1356788888875 99988763 47899999999987  


Q ss_pred             ceEEEccccCCccChhHHHhCCeeEecCCCC---CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccC
Q 019387           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGV---LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLK  164 (342)
Q Consensus        88 k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~---~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~  164 (342)
                      |+|++.++|+|++|++++.++||.|+|+|++   ++.+||||+++++|+++|++..+.+.+++|.|..     ..+.+|+
T Consensus        84 k~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~-----~~~~~l~  158 (347)
T PLN02928         84 KLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE-----PIGDTLF  158 (347)
T ss_pred             eEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc-----ccccCCC
Confidence            9999999999999999999999999999985   7899999999999999999999999999998743     2467899


Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhcCCEEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      |||+||||+|+||+.+|+++ ++|||+|++||++..........     +.......  .......+|++++++||+|++
T Consensus       159 gktvGIiG~G~IG~~vA~~l-~afG~~V~~~dr~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl  232 (347)
T PLN02928        159 GKTVFILGYGAIGIELAKRL-RPFGVKLLATRRSWTSEPEDGLL-----IPNGDVDDLVDEKGGHEDIYEFAGEADIVVL  232 (347)
T ss_pred             CCEEEEECCCHHHHHHHHHH-hhCCCEEEEECCCCChhhhhhhc-----cccccccccccccCcccCHHHHHhhCCEEEE
Confidence            99999999999999999997 89999999999974321111000     00000000  000134699999999999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccc
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHI  312 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhi  312 (342)
                      |+|+|++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||          ||+++|||+
T Consensus       233 ~lPlt~~T~~li~~~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHi  312 (347)
T PLN02928        233 CCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHV  312 (347)
T ss_pred             CCCCChHhhcccCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcC
Confidence            9999999999999999999999999999999999999999999999999999999999999          799999999


Q ss_pred             cccccccccccccCchhhcccccccc
Q 019387          313 STQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       313 a~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      |++|.+..  ..+.++.++|...+++
T Consensus       313 a~~t~~~~--~~~~~~~~~nl~~~~~  336 (347)
T PLN02928        313 AGVTEYSY--RSMGKIVGDAALQLHA  336 (347)
T ss_pred             CCChHHHH--HHHHHHHHHHHHHHHC
Confidence            99998855  6677777888776653

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=100.00  E-value=1.2e-58  Score=467.69  Aligned_cols=293  Identities=33%  Similarity=0.471  Sum_probs=253.3

Q ss_pred             EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcccc
Q 019387           17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVG   96 (342)
Q Consensus        17 ~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G   96 (342)
                      ||+++.++.++ .++.|++.++++...  .  ..+++++.+.+++ +|+++++..+++++++++++|+|  |+|++.|+|
T Consensus         1 ~vli~~~~~~~-~~~~l~~~~~~~~~~--~--~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~I~~~~~G   72 (525)
T TIGR01327         1 KVLIADPISPD-GIDILEDVGVEVDVQ--T--GLSREELLEIIPD-YDALIVRSATKVTEEVIAAAPKL--KVIGRAGVG   72 (525)
T ss_pred             CEEEeCCCCHH-HHHHHHhcCcEEEeC--C--CCCHHHHHHHhcC-CCEEEEcCCCCcCHHHHhhCCCc--eEEEECCcc
Confidence            47778777654 467787766777642  1  2467888888875 99999887678999999999987  999999999


Q ss_pred             CCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHH
Q 019387           97 YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI  176 (342)
Q Consensus        97 ~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~I  176 (342)
                      +|+||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++.+++|.|.++   .+.|.+|+||||||||+|+|
T Consensus        73 ~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G~I  149 (525)
T TIGR01327        73 VDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRK---AFMGTELYGKTLGVIGLGRI  149 (525)
T ss_pred             cchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCcccc---ccCccccCCCEEEEECCCHH
Confidence            999999999999999999999999999999999999999999999999999988642   24578999999999999999


Q ss_pred             HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019387          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (342)
Q Consensus       177 G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~  256 (342)
                      |+++|++| ++|||+|++||++.......               ..++...+++++++++||+|++|+|+|++|+++||+
T Consensus       150 G~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~  213 (525)
T TIGR01327       150 GSIVAKRA-KAFGMKVLAYDPYISPERAE---------------QLGVELVDDLDELLARADFITVHTPLTPETRGLIGA  213 (525)
T ss_pred             HHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH
Confidence            99999997 89999999999874321110               011222358999999999999999999999999999


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCccccccccccccccccccccCc
Q 019387          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRATSCPKLTRE  327 (342)
Q Consensus       257 ~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~~~~~~~~~  327 (342)
                      +.|++||+|++|||+|||++||++||++||++|+|+||+||||++||         ||+++|||+|+.|.+..  ..+.+
T Consensus       214 ~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvi~TPHia~~t~e~~--~~~~~  291 (525)
T TIGR01327       214 EELAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPPTDNPLFDLDNVIATPHLGASTREAQ--ENVAT  291 (525)
T ss_pred             HHHhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCCCCChhhcCCCeEECCCccccHHHHH--HHHHH
Confidence            99999999999999999999999999999999999999999999999         89999999999998764  66667


Q ss_pred             hhhcccccccc
Q 019387          328 WPIYDNSCCIR  338 (342)
Q Consensus       328 ~~~~~~~~~~~  338 (342)
                      ..++|...+++
T Consensus       292 ~~~~ni~~~~~  302 (525)
T TIGR01327       292 QVAEQVLDALK  302 (525)
T ss_pred             HHHHHHHHHHc
Confidence            77777766653

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=100.00  E-value=3.4e-58  Score=439.57  Aligned_cols=295  Identities=26%  Similarity=0.418  Sum_probs=249.3

Q ss_pred             eEEEEe--CCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEc
Q 019387           16 YRVVST--KPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        16 ~~vl~~--~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~   93 (342)
                      |||++.  ++...+-..+.+++.+.++...   +..++.+. .+.+.+ +|++++...+++++++++++|+.++|+|++.
T Consensus         2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~---~~~~~~~~-~~~~~~-~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~   76 (330)
T PRK12480          2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTS---KELLSSAT-VDQLKD-YDGVTTMQFGKLENDVYPKLESYGIKQIAQR   76 (330)
T ss_pred             cEEEEEeCcHHHHHHHHHHHHhcCeEEEEc---CCCCCHHH-HHHhCC-CCEEEEecCCCCCHHHHHhhhhcCceEEEec
Confidence            565554  4444333445566666566542   22355554 666664 9999987666899999999985455999999


Q ss_pred             cccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEec
Q 019387           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        94 ~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~  173 (342)
                      |+|+|+||+++|+++||.|+|+|++++++||||+++++|++.|+++.+++.+++|.|. |... ..+++|+|++|||||+
T Consensus        77 ~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~-w~~~-~~~~~l~g~~VgIIG~  154 (330)
T PRK12480         77 TAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFT-WQAE-IMSKPVKNMTVAIIGT  154 (330)
T ss_pred             ccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcc-cccc-cCccccCCCEEEEECC
Confidence            9999999999999999999999999999999999999999999999999999999874 5432 3468999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019387          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (342)
Q Consensus       174 G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~l  253 (342)
                      |+||+.+|++| ++||++|++||+++..... +                 .....++++++++||+|++|+|++++|+++
T Consensus       155 G~IG~~vA~~L-~~~G~~V~~~d~~~~~~~~-~-----------------~~~~~~l~ell~~aDiVil~lP~t~~t~~l  215 (330)
T PRK12480        155 GRIGAATAKIY-AGFGATITAYDAYPNKDLD-F-----------------LTYKDSVKEAIKDADIISLHVPANKESYHL  215 (330)
T ss_pred             CHHHHHHHHHH-HhCCCEEEEEeCChhHhhh-h-----------------hhccCCHHHHHhcCCEEEEeCCCcHHHHHH
Confidence            99999999997 7999999999998753211 0                 012358999999999999999999999999


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-----------------------CCccccc
Q 019387          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-----------------------LGFSSFK  310 (342)
Q Consensus       254 i~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-----------------------~~~~~tP  310 (342)
                      ++++.|++||+|++|||+|||.+||++||++||++|+|+|||||||++||                       ||+++||
T Consensus       216 i~~~~l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTP  295 (330)
T PRK12480        216 FDKAMFDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTP  295 (330)
T ss_pred             HhHHHHhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECC
Confidence            99999999999999999999999999999999999999999999999997                       3889999


Q ss_pred             cccccccccccccccCchhhcccccccc
Q 019387          311 HISTQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       311 hia~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      |+|++|.+..  ..+.+..++|...|++
T Consensus       296 Hia~~t~~~~--~~~~~~~~~n~~~~~~  321 (330)
T PRK12480        296 HIAFFSDEAV--QNLVEGGLNAALSVIN  321 (330)
T ss_pred             cccccHHHHH--HHHHHHHHHHHHHHHh
Confidence            9999999865  7788888888887765

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=100.00  E-value=5.9e-58  Score=462.84  Aligned_cols=293  Identities=32%  Similarity=0.450  Sum_probs=253.0

Q ss_pred             eEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387           16 YRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        16 ~~vl~~~~~~~~~~~~~l~~~-~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~   94 (342)
                      |+|+++.++++. .++.|++. ++++...  .  ..+++++.+.+.+ +|+++++..+++++++++++|+|  |+|++.|
T Consensus         1 m~ili~~~~~~~-~~~~l~~~~~~~v~~~--~--~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   72 (526)
T PRK13581          1 MKVLVSDPISPA-GLEILKDAPGVEVDVK--T--GLDKEELLEIIGD-YDALIVRSATKVTAEVLEAAKNL--KVIGRAG   72 (526)
T ss_pred             CeEEEeCCCCHH-HHHHHhccCCeEEEeC--C--CCCHHHHHHHhcC-CCEEEEcCCCCCCHHHHhhCCCC--eEEEECC
Confidence            368888887754 46777665 4555432  1  2467888888875 99999887778999999999987  9999999


Q ss_pred             ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC
Q 019387           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (342)
Q Consensus        95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G  174 (342)
                      +|+|+||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|.++   .+.|.+|+||||||||+|
T Consensus        73 ~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~---~~~g~~l~gktvgIiG~G  149 (526)
T PRK13581         73 VGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERK---KFMGVELYGKTLGIIGLG  149 (526)
T ss_pred             cccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCcc---CccccccCCCEEEEECCC
Confidence            99999999999999999999999999999999999999999999999999999998653   235789999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccccc
Q 019387          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (342)
Q Consensus       175 ~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li  254 (342)
                      +||+.+|+++ ++|||+|++||++.......               ..++.. .++++++++||+|++|+|+|++|+++|
T Consensus       150 ~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~---------------~~g~~~-~~l~ell~~aDiV~l~lP~t~~t~~li  212 (526)
T PRK13581        150 RIGSEVAKRA-KAFGMKVIAYDPYISPERAA---------------QLGVEL-VSLDELLARADFITLHTPLTPETRGLI  212 (526)
T ss_pred             HHHHHHHHHH-HhCCCEEEEECCCCChhHHH---------------hcCCEE-EcHHHHHhhCCEEEEccCCChHhhcCc
Confidence            9999999997 89999999999975321110               011222 389999999999999999999999999


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCcccccccccccccccccccc
Q 019387          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRATSCPKLT  325 (342)
Q Consensus       255 ~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~~~~~~~  325 (342)
                      +++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||         ||+++|||+|+.|.+..  ..+
T Consensus       213 ~~~~l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~~--~~~  290 (526)
T PRK13581        213 GAEELAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPTDSPLFELPNVVVTPHLGASTAEAQ--ENV  290 (526)
T ss_pred             CHHHHhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCCCchhhcCCCeeEcCccccchHHHH--HHH
Confidence            9999999999999999999999999999999999999999999999998         79999999999998865  667


Q ss_pred             Cchhhcccccccc
Q 019387          326 REWPIYDNSCCIR  338 (342)
Q Consensus       326 ~~~~~~~~~~~~~  338 (342)
                      .+..++|...+++
T Consensus       291 ~~~~~~ni~~~~~  303 (526)
T PRK13581        291 AIQVAEQVIDALR  303 (526)
T ss_pred             HHHHHHHHHHHHc
Confidence            7777888776654

>PRK08605 D-lactate dehydrogenase; Validated

Probab=100.00  E-value=1.1e-57  Score=436.89  Aligned_cols=300  Identities=23%  Similarity=0.387  Sum_probs=252.6

Q ss_pred             CCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEE
Q 019387           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        13 ~~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~   92 (342)
                      |++++|+++++.+.+ +++.+.+. +++++..... ..+ +|..+.+.+ +|++++...+++++++++++|++++|+|++
T Consensus         1 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~-~~~-~e~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~   75 (332)
T PRK08605          1 MTKIKIMSVRDEDAP-YIKAWAEK-HHVEVDLTKE-ALT-DDNVEEVEG-FDGLSLSQQIPLSEAIYKLLNELGIKQIAQ   75 (332)
T ss_pred             CcEEEEEecCHHHHH-HHHHHHHh-cCeEEEEecC-CCC-HHHHHHhcC-CCEEEEecCCCCCHHHHHhhhhcCceEEEE
Confidence            456788888876654 45565443 2443322111 234 445566664 999988776789999999999866799999


Q ss_pred             ccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEe
Q 019387           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (342)
Q Consensus        93 ~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG  172 (342)
                      .|+|+|+||+++|+++||.|+|+|++++.+||||+++++|+++|++..+++.+++|.|. |... ..+++|+|++|||||
T Consensus        76 ~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~-~~~~-~~~~~l~g~~VgIIG  153 (332)
T PRK08605         76 RSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFR-WEPP-ILSRSIKDLKVAVIG  153 (332)
T ss_pred             cccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcc-cccc-cccceeCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999884 6542 346899999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019387          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       173 ~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~  252 (342)
                      +|+||+++|++|+++|||+|++||+++......                 ......++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~vA~~L~~~~g~~V~~~d~~~~~~~~~-----------------~~~~~~~l~ell~~aDvIvl~lP~t~~t~~  216 (332)
T PRK08605        154 TGRIGLAVAKIFAKGYGSDVVAYDPFPNAKAAT-----------------YVDYKDTIEEAVEGADIVTLHMPATKYNHY  216 (332)
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEECCCccHhHHh-----------------hccccCCHHHHHHhCCEEEEeCCCCcchhh
Confidence            999999999997468999999999987542111                 011235899999999999999999999999


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-----------------------CCcccc
Q 019387          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-----------------------LGFSSF  309 (342)
Q Consensus       253 li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-----------------------~~~~~t  309 (342)
                      +++++.|++||+|++|||++||.++|+++|+++|++|+|+||+||||+.||                       ||+++|
T Consensus       217 li~~~~l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilT  296 (332)
T PRK08605        217 LFNADLFKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILT  296 (332)
T ss_pred             hcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEEC
Confidence            999999999999999999999999999999999999999999999999997                       578999


Q ss_pred             ccccccccccccccccCchhhcccccccc
Q 019387          310 KHISTQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       310 Phia~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      ||+|++|.+..  ..+.+..++|..++++
T Consensus       297 PHia~~t~e~~--~~~~~~~~~n~~~~~~  323 (332)
T PRK08605        297 PHIAFYTDAAV--KNLIVDALDATLEVLQ  323 (332)
T ss_pred             CcccccHHHHH--HHHHHHHHHHHHHHHc
Confidence            99999998865  7777888888877754

>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]

Probab=100.00  E-value=1.8e-56  Score=420.53  Aligned_cols=280  Identities=36%  Similarity=0.488  Sum_probs=239.0

Q ss_pred             CCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHh-hccCCceEEEccccCCccChhHHHhCCeeEec
Q 019387           36 QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGN  114 (342)
Q Consensus        36 ~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l-~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n  114 (342)
                      .+++.......+..++..++...+.+...++.+.....++.+.+.++ |++  |+|+++|+|+||||+++|+++||+|+|
T Consensus        35 ~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~l--K~i~t~~vG~D~vDl~a~~krgI~V~n  112 (336)
T KOG0069|consen   35 QGYQLREEFLKEPKLIKTDFLKRIADSRIAISVPFTGAFTKELISALSPNL--KLIVTMSVGYDHVDLEAARKRGIRVAN  112 (336)
T ss_pred             ccccceehhccccccchhhhhhhccceeeeeecccchHHhHhhhhhcCCCe--eEEEEeecccchhhHHHHHhcCceEec
Confidence            34444444444445566666766665456666666677888888776 776  999999999999999999999999999


Q ss_pred             CCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEE
Q 019387          115 TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY  194 (342)
Q Consensus       115 ~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~  194 (342)
                      +|+.++.+|||++++++|.+.|++..+++++++|.| .|......|..+.||||||+|+|+||+.+|++| ++||+.+.|
T Consensus       113 vp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL-~~Fg~~i~y  190 (336)
T KOG0069|consen  113 VPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRL-KPFGCVILY  190 (336)
T ss_pred             cCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCccccccccCCEEEEecCcHHHHHHHHhh-hhccceeee
Confidence            999999999999999999999999999999999999 788777788999999999999999999999998 899988999


Q ss_pred             EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       195 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      +++++....+. .+.              .....++++++.+||+|++|||+|++|+|+||++.|.+||+|++|||++||
T Consensus       191 ~~r~~~~~~~~-~~~--------------~~~~~d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG  255 (336)
T KOG0069|consen  191 HSRTQLPPEEA-YEY--------------YAEFVDIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARG  255 (336)
T ss_pred             ecccCCchhhH-HHh--------------cccccCHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEecccc
Confidence            88876532111 111              011369999999999999999999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHcCCceEEEEecCCCCC---------CCccccccccccccccccccccCchhhcccccc
Q 019387          275 PVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRATSCPKLTREWPIYDNSCC  336 (342)
Q Consensus       275 ~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~~~~~~~~~~~~~~~~~~  336 (342)
                      .++|++++++||++|+|.+|+||||++||         .|+.++||++++|-++-  ..|.+.++.|..+.
T Consensus       256 ~iide~~l~eaL~sG~i~~aGlDVf~~EP~~~~~l~~~dnvv~~PHigs~t~~t~--~~m~~~v~~n~~~~  324 (336)
T KOG0069|consen  256 AIIDEEALVEALKSGKIAGAGLDVFEPEPPVDHPLLTLDNVVILPHIGSATLETR--EKMAEIVLNNLLAF  324 (336)
T ss_pred             ccccHHHHHHHHhcCCcccccccccCCCCCCCcchhcccceeEecccccCcHHHH--HHHHHHHHHHHHHH
Confidence            99999999999999999999999999999         68999999999998765  66677777666543

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=100.00  E-value=1.6e-54  Score=418.15  Aligned_cols=266  Identities=26%  Similarity=0.341  Sum_probs=221.4

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 019387           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        16 ~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~   95 (342)
                      ||||+...++.  ..+.+.+. .++....  ....+.++    +. ++|+++++..+++++++++ .+++  |+|++.++
T Consensus         1 mkIl~d~~~~~--~~~~~~~~-~ev~~~~--~~~~~~~~----l~-daD~liv~s~t~v~~~ll~-~~~L--k~I~~~~~   67 (378)
T PRK15438          1 MKILVDENMPY--ARELFSRL-GEVKAVP--GRPIPVAQ----LA-DADALMVRSVTKVNESLLA-GKPI--KFVGTATA   67 (378)
T ss_pred             CEEEEeCCcch--HHHHHhhc-CcEEEeC--CCCCCHHH----hC-CCcEEEEcCCCCCCHHHhc-CCCC--eEEEECcc
Confidence            57888877652  24556554 4776543  33455555    33 4999999877789999885 5765  99999999


Q ss_pred             cCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH
Q 019387           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (342)
Q Consensus        96 G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~  175 (342)
                      |+||||+++++++||.|+|+||+|+.+||||+++++|++.|+.                     |.+|.||||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~---------------------g~~L~gktvGIIG~G~  126 (378)
T PRK15438         68 GTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERD---------------------GFSLHDRTVGIVGVGN  126 (378)
T ss_pred             cccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccC---------------------CCCcCCCEEEEECcCH
Confidence            9999999999999999999999999999999999999999852                     2479999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcc----cc
Q 019387          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY  251 (342)
Q Consensus       176 IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~----t~  251 (342)
                      ||+.+|++| ++|||+|++||+.....               +.   . ....+|++++++||+|++|+|+|++    |+
T Consensus       127 IG~~vA~~l-~a~G~~V~~~dp~~~~~---------------~~---~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~  186 (378)
T PRK15438        127 VGRRLQARL-EALGIKTLLCDPPRADR---------------GD---E-GDFRSLDELVQEADILTFHTPLFKDGPYKTL  186 (378)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc---------------cc---c-cccCCHHHHHhhCCEEEEeCCCCCCcccccc
Confidence            999999997 89999999999754211               00   0 1246899999999999999999996    99


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-------CCc-ccccccccccccccccc
Q 019387          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-------LGF-SSFKHISTQDRATSCPK  323 (342)
Q Consensus       252 ~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-------~~~-~~tPhia~~~~~~~~~~  323 (342)
                      |+||++.|++||+|++|||+|||++||++||+++|++|++.+|+||||++||       +++ ++|||||++|.+..  .
T Consensus       187 ~li~~~~l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~~~~~Ll~~~~i~TPHiAg~s~e~~--~  264 (378)
T PRK15438        187 HLADEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPELNVELLKKVDIGTPHIAGYTLEGK--A  264 (378)
T ss_pred             cccCHHHHhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCCCchhhhhcCCEECCccCcCcHHHH--H
Confidence            9999999999999999999999999999999999999999999999999999       344 89999999997754  4


Q ss_pred             ccCchhhccccccc
Q 019387          324 LTREWPIYDNSCCI  337 (342)
Q Consensus       324 ~~~~~~~~~~~~~~  337 (342)
                      .+..+..+|...++
T Consensus       265 ~~~~~~~~~l~~~~  278 (378)
T PRK15438        265 RGTTQVFEAYSKFI  278 (378)
T ss_pred             HHHHHHHHHHHHHH
Confidence            45555666554443

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=100.00  E-value=1.5e-53  Score=412.44  Aligned_cols=267  Identities=24%  Similarity=0.303  Sum_probs=222.4

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 019387           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        16 ~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~   95 (342)
                      |||++...++-  ..+.+.+. .++....  ....+.+    .+. ++|+++++..+++++++++ .+++  |+|++.++
T Consensus         1 mkI~~d~~~p~--~~~~~~~~-~~v~~~~--~~~~~~~----~l~-daD~liv~~~t~v~~~ll~-~~~L--k~I~~~~~   67 (381)
T PRK00257          1 MKIVADENIPL--LDAFFAGF-GEIRRLP--GRAFDRA----AVR-DADVLLVRSVTRVDRALLE-GSRV--RFVGTCTI   67 (381)
T ss_pred             CEEEEecCchh--HHHHHhhC-CcEEEcC--CcccCHH----HhC-CceEEEEeCCCCCCHHHhc-CCCC--eEEEECCc
Confidence            68999887753  13444444 4666543  2233433    344 4999998877789999987 4655  99999999


Q ss_pred             cCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH
Q 019387           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (342)
Q Consensus        96 G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~  175 (342)
                      |+||||+++++++||.|+|+||+|+.+||||+++++|++.|+                     .|.+|.||||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~---------------------~g~~l~gktvGIIG~G~  126 (381)
T PRK00257         68 GTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER---------------------EGVDLAERTYGVVGAGH  126 (381)
T ss_pred             cccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc---------------------cCCCcCcCEEEEECCCH
Confidence            999999999999999999999999999999999999999874                     13579999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCc----ccc
Q 019387          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK----TTY  251 (342)
Q Consensus       176 IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~----~t~  251 (342)
                      ||+.+|+++ ++|||+|++||+.....              .+     .....++++++++||+|++|+|+|+    +|+
T Consensus       127 IG~~va~~l-~a~G~~V~~~Dp~~~~~--------------~~-----~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~  186 (381)
T PRK00257        127 VGGRLVRVL-RGLGWKVLVCDPPRQEA--------------EG-----DGDFVSLERILEECDVISLHTPLTKEGEHPTR  186 (381)
T ss_pred             HHHHHHHHH-HHCCCEEEEECCccccc--------------cc-----CccccCHHHHHhhCCEEEEeCcCCCCcccccc
Confidence            999999997 79999999999854321              00     0123689999999999999999999    599


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--------CCcccccccccccccccccc
Q 019387          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--------LGFSSFKHISTQDRATSCPK  323 (342)
Q Consensus       252 ~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--------~~~~~tPhia~~~~~~~~~~  323 (342)
                      |+||++.|++||+|++|||+|||++||++||+++|++|++.+|+||||++||        +|+++|||+|++|.+..  .
T Consensus       187 ~li~~~~l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~~~~~L~~~nvi~TPHiAg~s~e~~--~  264 (381)
T PRK00257        187 HLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQIDLELADLCTIATPHIAGYSLDGK--A  264 (381)
T ss_pred             ccCCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCChhhhhCCEEEcCccccCCHHHH--H
Confidence            9999999999999999999999999999999999999999999999999999        58899999999998754  4


Q ss_pred             ccCchhhcccccccc
Q 019387          324 LTREWPIYDNSCCIR  338 (342)
Q Consensus       324 ~~~~~~~~~~~~~~~  338 (342)
                      .+.++.++|...++.
T Consensus       265 r~~~~~~~nl~~~~~  279 (381)
T PRK00257        265 RGTAQIYQALCRFFG  279 (381)
T ss_pred             HHHHHHHHHHHHHHc
Confidence            555666666655543

>PRK06436 glycerate dehydrogenase; Provisional

Probab=100.00  E-value=3e-53  Score=400.38  Aligned_cols=239  Identities=19%  Similarity=0.268  Sum_probs=203.5

Q ss_pred             CceEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHH
Q 019387           62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (342)
Q Consensus        62 ~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~  141 (342)
                      ++|+++...+       ....+++  |+|++.|+|+|+||+++|+++||.++|. +.++.+||||+++++|++.|+++.+
T Consensus        34 ~a~~~~~~~~-------~~~~~~L--k~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~  103 (303)
T PRK06436         34 DAEAILIKGR-------YVPGKKT--KMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICEN  103 (303)
T ss_pred             CCCEEEecCC-------cCCCCCe--EEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHH
Confidence            4787754422       1224555  9999999999999999999998888775 7899999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC
Q 019387          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       142 ~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ++.+++|.|..+     .+++|+||||||||+|+||+++|+++ ++|||+|++||++....               +.. 
T Consensus       104 ~~~~~~g~w~~~-----~~~~L~gktvgIiG~G~IG~~vA~~l-~afG~~V~~~~r~~~~~---------------~~~-  161 (303)
T PRK06436        104 NYNMKNGNFKQS-----PTKLLYNKSLGILGYGGIGRRVALLA-KAFGMNIYAYTRSYVND---------------GIS-  161 (303)
T ss_pred             HHHHHcCCCCCC-----CCCCCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEECCCCccc---------------Ccc-
Confidence            999999988642     35789999999999999999999986 89999999999875321               100 


Q ss_pred             ccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 019387          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV  301 (342)
Q Consensus       222 ~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~  301 (342)
                         ....++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||+++|++||+++|++|++.+|+||||++
T Consensus       162 ---~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~  238 (303)
T PRK06436        162 ---SIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWN  238 (303)
T ss_pred             ---cccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCC
Confidence               01368999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-------CCccccccccc-cccccccccccCchhhccccccc
Q 019387          302 TE-------LGFSSFKHIST-QDRATSCPKLTREWPIYDNSCCI  337 (342)
Q Consensus       302 EP-------~~~~~tPhia~-~~~~~~~~~~~~~~~~~~~~~~~  337 (342)
                      ||       ||+++|||+++ .|.+..  ..+.+..++|...++
T Consensus       239 EP~~~~~~~~nviiTPHi~g~~t~e~~--~~~~~~~~~ni~~~~  280 (303)
T PRK06436        239 EPIITETNPDNVILSPHVAGGMSGEIM--QPAVALAFENIKNFF  280 (303)
T ss_pred             CCCCccCCCCCEEECCccccccCHHHH--HHHHHHHHHHHHHHH
Confidence            99       79999999875 665533  444556666665554

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=100.00  E-value=3.7e-53  Score=401.79  Aligned_cols=279  Identities=17%  Similarity=0.166  Sum_probs=222.6

Q ss_pred             EEEEeC-CCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 019387           17 RVVSTK-PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        17 ~vl~~~-~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~   95 (342)
                      .|++.. ....+.|.+.|++..++.++....+     ++    .. ++|+++++..   +.++++ .+++  |+|++.|+
T Consensus         2 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~~-~a~~~~~~~~---~~~~l~-~~~L--k~I~~~~a   65 (312)
T PRK15469          2 DIIFYHPTFDTQWWIEALRKALPQARVRAWKS-----GD----ND-PADYALVWHP---PVEMLA-GRDL--KAVFALGA   65 (312)
T ss_pred             EEEEeCCccCHHHHHHHHHHHCCCCeEEecCC-----CC----Cc-cCeEEEEeCC---ChHHhc-cCCc--eEEEEccc
Confidence            344433 3355558888888655554422111     11    12 4898888743   456664 4665  99999999


Q ss_pred             cCCccChhH-----HHhCCeeEecCCC-CCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEE
Q 019387           96 GYNNVDVNA-----ANKYGIAVGNTPG-VLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (342)
Q Consensus        96 G~d~id~~~-----~~~~gI~V~n~~~-~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvg  169 (342)
                      |+|++|...     +..+||.|+|+++ .++.+||||+++++|++.|+++.+.+.+++|.|..+     .+.+++|||||
T Consensus        66 G~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~-----~~~~l~g~tvg  140 (312)
T PRK15469         66 GVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPL-----PEYHREDFTIG  140 (312)
T ss_pred             ccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCC-----CCCCcCCCEEE
Confidence            999998322     3458999999865 689999999999999999999999999999988642     24679999999


Q ss_pred             EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcc
Q 019387          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (342)
Q Consensus       170 IvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~  249 (342)
                      |||+|+||+.+|++| ++|||+|++||++++...              +.  ..+....++++++++||+|++|+|+|++
T Consensus       141 IvG~G~IG~~vA~~l-~afG~~V~~~~~~~~~~~--------------~~--~~~~~~~~l~e~l~~aDvvv~~lPlt~~  203 (312)
T PRK15469        141 ILGAGVLGSKVAQSL-QTWGFPLRCWSRSRKSWP--------------GV--QSFAGREELSAFLSQTRVLINLLPNTPE  203 (312)
T ss_pred             EECCCHHHHHHHHHH-HHCCCEEEEEeCCCCCCC--------------Cc--eeecccccHHHHHhcCCEEEECCCCCHH
Confidence            999999999999997 799999999998754210              00  0111246899999999999999999999


Q ss_pred             cccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCcccccccccccccc
Q 019387          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRAT  319 (342)
Q Consensus       250 t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~  319 (342)
                      |+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||          ||+++|||+|+.|.+.
T Consensus       204 T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~  283 (312)
T PRK15469        204 TVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA  283 (312)
T ss_pred             HHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH
Confidence            999999999999999999999999999999999999999999999999999999          8999999999999763


Q ss_pred             ccccccCchhhccccccc
Q 019387          320 SCPKLTREWPIYDNSCCI  337 (342)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~  337 (342)
                          .+..+..+|...+.
T Consensus       284 ----~~~~~~~~n~~~~~  297 (312)
T PRK15469        284 ----EAVEYISRTIAQLE  297 (312)
T ss_pred             ----HHHHHHHHHHHHHH
Confidence                24455566655544

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=100.00  E-value=5.9e-46  Score=326.34  Aligned_cols=168  Identities=40%  Similarity=0.505  Sum_probs=143.9

Q ss_pred             HHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHH
Q 019387          128 ASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV  207 (342)
Q Consensus       128 l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~  207 (342)
                      ++++|++.|+++.+++.+++|.|  |......+++|+|+||||||+|+||+.+|+++ ++|||+|++||++.........
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W--~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~~~   77 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEW--ASRERFPGRELRGKTVGIIGYGRIGRAVARRL-KAFGMRVIGYDRSPKPEEGADE   77 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBH--HHHTTTTBS-STTSEEEEESTSHHHHHHHHHH-HHTT-EEEEEESSCHHHHHHHH
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCC--CCCcCCCccccCCCEEEEEEEcCCcCeEeeee-ecCCceeEEecccCChhhhccc
Confidence            58999999999999999999998  22333567899999999999999999999997 8999999999999875431100


Q ss_pred             hhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                                    ..+ ...++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||++||+
T Consensus        78 --------------~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~  142 (178)
T PF02826_consen   78 --------------FGV-EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALE  142 (178)
T ss_dssp             --------------TTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHH
T ss_pred             --------------ccc-eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHh
Confidence                          011 34799999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEEEecCCCCC----------CCcccccccc
Q 019387          288 QNPMFRVGLDVFEVTE----------LGFSSFKHIS  313 (342)
Q Consensus       288 ~g~i~~aaLDV~~~EP----------~~~~~tPhia  313 (342)
                      +|+++||+||||++||          ||+++|||+|
T Consensus       143 ~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a  178 (178)
T PF02826_consen  143 SGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA  178 (178)
T ss_dssp             TTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred             hccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence            9999999999999999          8999999986

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>KOG0067 consensus Transcription factor CtBP [Transcription]

Probab=99.97  E-value=2.5e-31  Score=248.08  Aligned_cols=261  Identities=26%  Similarity=0.338  Sum_probs=218.1

Q ss_pred             CCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHH
Q 019387           50 LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAAS  129 (342)
Q Consensus        50 ~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~  129 (342)
                      ++.+|+.+.+-..+-+-....+..++++.+++.+.+  +++.+.|.|+|++|+.+|.+-||.|||.|+...+.+|+.++.
T Consensus        61 qstqeIhekvLneavgam~yh~i~l~reDlEkfkal--Rv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~  138 (435)
T KOG0067|consen   61 QSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFKAL--RVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLC  138 (435)
T ss_pred             cchHHHHHHHHHHhhhcceeeecccchhhHHHhhhh--ceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHH
Confidence            467788775543343333344456788888888877  999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhchHHHHHHHHcCCCCC-CCCC---cccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH
Q 019387          130 LSLAAARRIVEADEFMRAGLYDG-WLPN---LFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  205 (342)
Q Consensus       130 ~~L~~~R~~~~~~~~~~~g~w~~-w~~~---~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~  205 (342)
                      ++|.++|+.....+.+++|.|.. |...   ......++|.++|++|+|++|+.++.+ |++||..|+.||++....+++
T Consensus       139 hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~-A~afg~~~ifydp~~~~g~~~  217 (435)
T KOG0067|consen  139 HILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALR-AKAFGFVVIFYDPYLIDGIDK  217 (435)
T ss_pred             HHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhh-hhcccceeeeecchhhhhhhh
Confidence            99999999999999999998853 2211   112356889999999999999999999 699999999999998766554


Q ss_pred             HHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 019387          206 FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH  285 (342)
Q Consensus       206 ~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~a  285 (342)
                      ++               +.....++++++.++|.+++||.++++++++|+...+++|++|++++|++||.++|+++|.+|
T Consensus       218 ~l---------------g~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqa  282 (435)
T KOG0067|consen  218 SL---------------GLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQA  282 (435)
T ss_pred             hc---------------ccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhh
Confidence            32               333456799999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCceEEEEecCCCCC----CCccccccccccccccccccccCchhh
Q 019387          286 LKQNPMFRVGLDVFEVTE----LGFSSFKHISTQDRATSCPKLTREWPI  330 (342)
Q Consensus       286 L~~g~i~~aaLDV~~~EP----~~~~~tPhia~~~~~~~~~~~~~~~~~  330 (342)
                      |++|++.+++=.-|.+-|    ||.+-+||.++++...+  ..+++..+
T Consensus       283 Lk~G~i~~aa~~~~~~~~l~d~pn~ic~~~ta~~~e~~~--~e~re~aa  329 (435)
T KOG0067|consen  283 LKSGRIRGAAPRSFKQGPLKDAPNLICTPHTAWYSEAAS--VELREVAA  329 (435)
T ss_pred             hccCceecccCcccccccccCCCCCCCCcccchhhHHHH--HHHHHHHh
Confidence            999999999933355556    99999999998876544  44444433

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=99.88  E-value=8.7e-22  Score=193.91  Aligned_cols=167  Identities=19%  Similarity=0.308  Sum_probs=133.4

Q ss_pred             ccccCCccC-hhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEE
Q 019387           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (342)
Q Consensus        93 ~~~G~d~id-~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIv  171 (342)
                      .++|+..+- .+.....||+|+|+|+.++.+++|+++++++++..      ..+|.+           +..+.||+++|+
T Consensus       198 TttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~d------~~~R~~-----------~~~LaGKtVgVI  260 (476)
T PTZ00075        198 TTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLID------GIFRAT-----------DVMIAGKTVVVC  260 (476)
T ss_pred             chHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHHH------HHHHhc-----------CCCcCCCEEEEE
Confidence            355655432 11222357999999999999999999999999883      334443           357999999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019387          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~  251 (342)
                      |+|.||+.+|+++ ++|||+|+++++.+....+....              ++ ...++++++++||+|++|+    .|+
T Consensus       261 G~G~IGr~vA~rL-~a~Ga~ViV~e~dp~~a~~A~~~--------------G~-~~~~leell~~ADIVI~at----Gt~  320 (476)
T PTZ00075        261 GYGDVGKGCAQAL-RGFGARVVVTEIDPICALQAAME--------------GY-QVVTLEDVVETADIFVTAT----GNK  320 (476)
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEEeCCchhHHHHHhc--------------Cc-eeccHHHHHhcCCEEEECC----Ccc
Confidence            9999999999996 89999999998776543222111              11 2357999999999999985    478


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       252 ~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      ++|+++.|++||+|++|||+||+   |++.++++|+++.    ++||++.||
T Consensus       321 ~iI~~e~~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep  365 (476)
T PTZ00075        321 DIITLEHMRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKP  365 (476)
T ss_pred             cccCHHHHhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccC
Confidence            99999999999999999999999   7888899998754    789999999

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.84  E-value=8e-20  Score=171.88  Aligned_cols=198  Identities=19%  Similarity=0.210  Sum_probs=145.3

Q ss_pred             HHHHHhCCCeEEEecCCCC-----CCCHHHHHHH-hCCCceEEEecCC----------------CCccHHHHHHhhccCC
Q 019387           30 INLLIEQDCRVEICTQKKT-----ILSVEDIIAL-IGDKCDGVIGQLT----------------EDWGETLFAALSRAGG   87 (342)
Q Consensus        30 ~~~l~~~~~~v~~~~~~~~-----~~~~~e~~~~-~~~~~d~vi~~~~----------------~~~~~e~l~~l~~l~~   87 (342)
                      .+.|.+.|+.|..+.....     .....++.+. +. ++|++|.-..                .++++++++++|.   
T Consensus        17 ~~~l~~~g~~v~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~---   92 (287)
T TIGR02853        17 IRKLEELDAKISLIGFDQLEDGFTGAVKCELLELDLT-TLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTKG---   92 (287)
T ss_pred             HHHHHHCCCEEEEEeccccccccccceeecchhhhhc-cCCEEEECCccccCCceEecccccCCccccHHHHHhcCC---
Confidence            5678888999877644211     0112222222 33 4888885321                2346788888772   


Q ss_pred             ceEEEccccCCccChh-HHHhCCeeEe------cCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc
Q 019387           88 KAFSNMAVGYNNVDVN-AANKYGIAVG------NTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (342)
Q Consensus        88 k~i~~~~~G~d~id~~-~~~~~gI~V~------n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~  160 (342)
                        ++...+|+++.|++ +|+++||+|+      |++.+|+.++||+++.+++...                        +
T Consensus        93 --~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~------------------------~  146 (287)
T TIGR02853        93 --HCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT------------------------D  146 (287)
T ss_pred             --CCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc------------------------C
Confidence              45567788888888 9999999999      9999999999999998777431                        2


Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+++|++++|+|+|.||+.+|+.| +++|++|++++++++..... .        ..+...   ....+++++++++|+|
T Consensus       147 ~~l~gk~v~IiG~G~iG~avA~~L-~~~G~~V~v~~R~~~~~~~~-~--------~~g~~~---~~~~~l~~~l~~aDiV  213 (287)
T TIGR02853       147 FTIHGSNVMVLGFGRTGMTIARTF-SALGARVFVGARSSADLARI-T--------EMGLIP---FPLNKLEEKVAEIDIV  213 (287)
T ss_pred             CCCCCCEEEEEcChHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH-H--------HCCCee---ecHHHHHHHhccCCEE
Confidence            478999999999999999999997 79999999999987542111 0        011111   1234678899999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      ++|+|.     ++++++.++.||+++++||++..+
T Consensus       214 int~P~-----~ii~~~~l~~~k~~aliIDlas~P  243 (287)
T TIGR02853       214 INTIPA-----LVLTADVLSKLPKHAVIIDLASKP  243 (287)
T ss_pred             EECCCh-----HHhCHHHHhcCCCCeEEEEeCcCC
Confidence            999996     378899999999999999998643

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.70  E-value=1.7e-16  Score=132.58  Aligned_cols=101  Identities=32%  Similarity=0.457  Sum_probs=87.2

Q ss_pred             EEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccccC
Q 019387           18 VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGY   97 (342)
Q Consensus        18 vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~   97 (342)
                      ||++++++++. ++.|++ ++++++..    ..+.+++.+.+.+ +|+++++..+++++++++.+|++  |+|++.|+|+
T Consensus         1 ili~~~~~~~~-~~~l~~-~~~v~~~~----~~~~~~~~~~l~~-~d~ii~~~~~~~~~~~l~~~~~L--k~I~~~~~G~   71 (133)
T PF00389_consen    1 ILITDPLPDEE-IERLEE-GFEVEFCD----SPSEEELAERLKD-ADAIIVGSGTPLTAEVLEAAPNL--KLISTAGAGV   71 (133)
T ss_dssp             EEESSS-SHHH-HHHHHH-TSEEEEES----SSSHHHHHHHHTT-ESEEEESTTSTBSHHHHHHHTT---SEEEESSSSC
T ss_pred             eEEeccCCHHH-HHHHHC-CceEEEeC----CCCHHHHHHHhCC-CeEEEEcCCCCcCHHHHhcccee--EEEEEccccc
Confidence            68889887754 788888 66888765    3578999999986 99999998777999999999987  9999999999


Q ss_pred             CccChhHHHhCCeeEecCCCCCchhHHHHH
Q 019387           98 NNVDVNAANKYGIAVGNTPGVLTETTAELA  127 (342)
Q Consensus        98 d~id~~~~~~~gI~V~n~~~~~~~~vAE~~  127 (342)
                      |+||+++|+++||.|+|+||+++.+||||+
T Consensus        72 d~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   72 DNIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             TTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             CcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            999999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=99.69  E-value=9.5e-16  Score=145.00  Aligned_cols=198  Identities=18%  Similarity=0.140  Sum_probs=142.1

Q ss_pred             HHHHHHhCCCeEEEecCCCCCCC-----H-HHHHHHhCCCceEEEecCC----------------CCccHHHHHHhhccC
Q 019387           29 WINLLIEQDCRVEICTQKKTILS-----V-EDIIALIGDKCDGVIGQLT----------------EDWGETLFAALSRAG   86 (342)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~~~~~~-----~-~e~~~~~~~~~d~vi~~~~----------------~~~~~e~l~~l~~l~   86 (342)
                      ..+.|.+.|++|.+...++....     . +...+.+. ++|+++.-.+                ..+++++++.+|+. 
T Consensus        17 ~~~~l~~~G~~v~~~g~~~~~~~~~g~~~~~~~~~~~~-~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~-   94 (296)
T PRK08306         17 LIRKLVELGAKVSLVGFDQLDHGFTGATKSSSLEEALS-DVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTPEH-   94 (296)
T ss_pred             HHHHHHHCCCEEEEEeccccccccCCceeeccHHHHhc-cCCEEEECCccccCCceeeccccccCCcchHHHHHhcCCC-
Confidence            35778889999987655433220     0 01122233 4898885311                12357889999975 


Q ss_pred             CceEEEccccCCccChhHHHhCCeeEecCCCC------CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc
Q 019387           87 GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (342)
Q Consensus        87 ~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~------~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~  160 (342)
                       .. ...|.+.++++ +.+.++||.+++....      |+.++||.++...+...                        +
T Consensus        95 -~~-v~~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~------------------------~  147 (296)
T PRK08306         95 -CT-IFSGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHT------------------------P  147 (296)
T ss_pred             -CE-EEEecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhC------------------------C
Confidence             43 34688899988 8899999999987764      88999999777544211                        2


Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+++|++++|+|+|.+|+.+++.| +++|++|.++|+++......  ..       .+..   .....++.+.++++|+|
T Consensus       148 ~~l~g~kvlViG~G~iG~~~a~~L-~~~Ga~V~v~~r~~~~~~~~--~~-------~G~~---~~~~~~l~~~l~~aDiV  214 (296)
T PRK08306        148 ITIHGSNVLVLGFGRTGMTLARTL-KALGANVTVGARKSAHLARI--TE-------MGLS---PFHLSELAEEVGKIDII  214 (296)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHHHHHH--HH-------cCCe---eecHHHHHHHhCCCCEE
Confidence            457899999999999999999997 79999999999987542111  11       1111   11234678889999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      +.++|.     .+++++.++.|++|+++||++-
T Consensus       215 I~t~p~-----~~i~~~~l~~~~~g~vIIDla~  242 (296)
T PRK08306        215 FNTIPA-----LVLTKEVLSKMPPEALIIDLAS  242 (296)
T ss_pred             EECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence            999883     5788999999999999999873

>PLN02494 adenosylhomocysteinase

Probab=99.69  E-value=7.4e-17  Score=158.82  Aligned_cols=122  Identities=19%  Similarity=0.320  Sum_probs=103.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..+.||+++|+|+|.||+.+|+++ ++||++|+++++.+....+.....              + ...+++++++.+|+|
T Consensus       250 i~LaGKtVvViGyG~IGr~vA~~a-ka~Ga~VIV~e~dp~r~~eA~~~G--------------~-~vv~leEal~~ADVV  313 (477)
T PLN02494        250 VMIAGKVAVICGYGDVGKGCAAAM-KAAGARVIVTEIDPICALQALMEG--------------Y-QVLTLEDVVSEADIF  313 (477)
T ss_pred             CccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhHHHHhcC--------------C-eeccHHHHHhhCCEE
Confidence            458999999999999999999996 899999999998875433322111              1 124789999999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCC-CcccCHHHHHHH--HHcCCceEEEEecCCCCC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR-GPVIDEVALVEH--LKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR-G~~vd~~aL~~a--L~~g~i~~aaLDV~~~EP  303 (342)
                      +.+    ..|+++|+.+.|+.||+|++|+|+|| +..||+++|.++  ++.+.++ +.+|+|+.|-
T Consensus       314 I~t----TGt~~vI~~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d  374 (477)
T PLN02494        314 VTT----TGNKDIIMVDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD  374 (477)
T ss_pred             EEC----CCCccchHHHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence            973    46789999999999999999999999 679999999998  9999888 9999999874

>TIGR00936 ahcY adenosylhomocysteinase

Probab=99.65  E-value=3.7e-15  Score=145.64  Aligned_cols=123  Identities=26%  Similarity=0.316  Sum_probs=102.3

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..+.|++|+|+|+|.||+.+|+++ +++|++|+++|..+....+....              ++ ...+++++++++|+|
T Consensus       191 ~~l~Gk~VvViG~G~IG~~vA~~a-k~~Ga~ViV~d~dp~r~~~A~~~--------------G~-~v~~leeal~~aDVV  254 (406)
T TIGR00936       191 LLIAGKTVVVAGYGWCGKGIAMRA-RGMGARVIVTEVDPIRALEAAMD--------------GF-RVMTMEEAAKIGDIF  254 (406)
T ss_pred             CCCCcCEEEEECCCHHHHHHHHHH-hhCcCEEEEEeCChhhHHHHHhc--------------CC-EeCCHHHHHhcCCEE
Confidence            358899999999999999999996 89999999998877543222111              11 224678899999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      +.+.    .+.++|+.+.|..||+|++++|+||+++ ||.++|.+++.+.+..+..+|+|.-..
T Consensus       255 ItaT----G~~~vI~~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~~~  314 (406)
T TIGR00936       255 ITAT----GNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYILKD  314 (406)
T ss_pred             EECC----CCHHHHHHHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEeCC
Confidence            8765    3688999999999999999999999998 999999999988888889999988643

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=99.53  E-value=4.7e-13  Score=131.63  Aligned_cols=155  Identities=22%  Similarity=0.271  Sum_probs=111.8

Q ss_pred             ccccCCccC-hhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEE
Q 019387           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (342)
Q Consensus        93 ~~~G~d~id-~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIv  171 (342)
                      .++|+..+. .....+.+++|.|++..+..+..|...+.-.+....+.      +.           .+..+.|++|+|+
T Consensus       156 TttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~------ra-----------t~~~l~Gk~VlVi  218 (425)
T PRK05476        156 TTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIK------RA-----------TNVLIAGKVVVVA  218 (425)
T ss_pred             chHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHH------Hh-----------ccCCCCCCEEEEE
Confidence            456665542 22223567999999999888866644443333322111      11           1235789999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019387          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~  251 (342)
                      |+|.||+.+|+++ +++|++|+++|+.+....+....              ++ ...+++++++.+|+|+.+.    .+.
T Consensus       219 G~G~IG~~vA~~l-r~~Ga~ViV~d~dp~ra~~A~~~--------------G~-~v~~l~eal~~aDVVI~aT----G~~  278 (425)
T PRK05476        219 GYGDVGKGCAQRL-RGLGARVIVTEVDPICALQAAMD--------------GF-RVMTMEEAAELGDIFVTAT----GNK  278 (425)
T ss_pred             CCCHHHHHHHHHH-HhCCCEEEEEcCCchhhHHHHhc--------------CC-EecCHHHHHhCCCEEEECC----CCH
Confidence            9999999999996 89999999999887543322111              11 1246889999999999875    457


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 019387          252 HLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (342)
Q Consensus       252 ~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~  284 (342)
                      ++|+.+.|..||+|++++|+|+.+. +|.++|.+
T Consensus       279 ~vI~~~~~~~mK~GailiNvG~~d~Eid~~~L~~  312 (425)
T PRK05476        279 DVITAEHMEAMKDGAILANIGHFDNEIDVAALEE  312 (425)
T ss_pred             HHHHHHHHhcCCCCCEEEEcCCCCCccChHHHhh
Confidence            7999999999999999999999887 78887754

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=99.50  E-value=4.9e-14  Score=132.80  Aligned_cols=93  Identities=25%  Similarity=0.300  Sum_probs=75.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..|.||||||||+|+||+++|++| ++||++|++|++..... +..        ...     ++ ...++++++++||+|
T Consensus        12 ~~LkgKtVGIIG~GsIG~amA~nL-~d~G~~ViV~~r~~~s~-~~A--------~~~-----G~-~v~sl~Eaak~ADVV   75 (335)
T PRK13403         12 ELLQGKTVAVIGYGSQGHAQAQNL-RDSGVEVVVGVRPGKSF-EVA--------KAD-----GF-EVMSVSEAVRTAQVV   75 (335)
T ss_pred             hhhCcCEEEEEeEcHHHHHHHHHH-HHCcCEEEEEECcchhh-HHH--------HHc-----CC-EECCHHHHHhcCCEE
Confidence            579999999999999999999997 79999999997653221 110        001     12 124899999999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEE
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVN  270 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lIN  270 (342)
                      ++|+|+ ++++++++++.+..||+|++|+-
T Consensus        76 ~llLPd-~~t~~V~~~eil~~MK~GaiL~f  104 (335)
T PRK13403         76 QMLLPD-EQQAHVYKAEVEENLREGQMLLF  104 (335)
T ss_pred             EEeCCC-hHHHHHHHHHHHhcCCCCCEEEE
Confidence            999997 77899999999999999997764

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=99.43  E-value=1.1e-12  Score=112.33  Aligned_cols=104  Identities=29%  Similarity=0.426  Sum_probs=78.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..+.||++.|+|||.+|+.+|+.| +++|++|.+++..|-..+++..+.|               ...+++++++++|++
T Consensus        19 ~~l~Gk~vvV~GYG~vG~g~A~~l-r~~Ga~V~V~e~DPi~alqA~~dGf---------------~v~~~~~a~~~adi~   82 (162)
T PF00670_consen   19 LMLAGKRVVVIGYGKVGKGIARAL-RGLGARVTVTEIDPIRALQAAMDGF---------------EVMTLEEALRDADIF   82 (162)
T ss_dssp             S--TTSEEEEE--SHHHHHHHHHH-HHTT-EEEEE-SSHHHHHHHHHTT----------------EEE-HHHHTTT-SEE
T ss_pred             eeeCCCEEEEeCCCcccHHHHHHH-hhCCCEEEEEECChHHHHHhhhcCc---------------EecCHHHHHhhCCEE
Confidence            568999999999999999999997 8999999999999987777766554               235899999999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~  284 (342)
                      +.+..    ++++|..+.|.+||+|+++.|++.-+. +|-+.|.+
T Consensus        83 vtaTG----~~~vi~~e~~~~mkdgail~n~Gh~d~Eid~~~L~~  123 (162)
T PF00670_consen   83 VTATG----NKDVITGEHFRQMKDGAILANAGHFDVEIDVDALEA  123 (162)
T ss_dssp             EE-SS----SSSSB-HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred             EECCC----CccccCHHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence            88764    478999999999999999999997655 56665544

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1

Probab=99.28  E-value=9.4e-12  Score=107.64  Aligned_cols=112  Identities=24%  Similarity=0.259  Sum_probs=84.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++|||||+|+||..+|++| ..-|.+|++||++++.. +++.+             .+....+++.|++++||+|++|+|
T Consensus         2 ~~Ig~IGlG~mG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~~-------------~g~~~~~s~~e~~~~~dvvi~~v~   66 (163)
T PF03446_consen    2 MKIGFIGLGNMGSAMARNL-AKAGYEVTVYDRSPEKA-EALAE-------------AGAEVADSPAEAAEQADVVILCVP   66 (163)
T ss_dssp             BEEEEE--SHHHHHHHHHH-HHTTTEEEEEESSHHHH-HHHHH-------------TTEEEESSHHHHHHHBSEEEE-SS
T ss_pred             CEEEEEchHHHHHHHHHHH-HhcCCeEEeeccchhhh-hhhHH-------------hhhhhhhhhhhHhhcccceEeecc
Confidence            5899999999999999998 47799999999987543 22221             123456899999999999999999


Q ss_pred             CCcccccccCH-HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          246 LDKTTYHLINK-ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       246 l~~~t~~li~~-~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ..++.+.++.. ..+..+++|.++||++....-+...+.+.+++..+.
T Consensus        67 ~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~  114 (163)
T PF03446_consen   67 DDDAVEAVLFGENILAGLRPGKIIIDMSTISPETSRELAERLAAKGVR  114 (163)
T ss_dssp             SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEE
T ss_pred             cchhhhhhhhhhHHhhccccceEEEecCCcchhhhhhhhhhhhhccce
Confidence            87887776632 367889999999999999999999999999865543

1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=99.27  E-value=1.4e-10  Score=113.85  Aligned_cols=104  Identities=25%  Similarity=0.386  Sum_probs=83.3

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..+.|++|+|+|+|.||+.+|+.+ +++|++|+++|+.+........         .+     + ...++++.+..+|+|
T Consensus       198 ~~l~GktVvViG~G~IG~~va~~a-k~~Ga~ViV~d~d~~R~~~A~~---------~G-----~-~~~~~~e~v~~aDVV  261 (413)
T cd00401         198 VMIAGKVAVVAGYGDVGKGCAQSL-RGQGARVIVTEVDPICALQAAM---------EG-----Y-EVMTMEEAVKEGDIF  261 (413)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECChhhHHHHHh---------cC-----C-EEccHHHHHcCCCEE
Confidence            468999999999999999999996 8999999999988754322211         11     1 123567888999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~  284 (342)
                      +.|..    +.+.++...|..||+|++++|+|++++ +|..+|..
T Consensus       262 I~atG----~~~~i~~~~l~~mk~GgilvnvG~~~~eId~~~L~~  302 (413)
T cd00401         262 VTTTG----NKDIITGEHFEQMKDGAIVCNIGHFDVEIDVKGLKE  302 (413)
T ss_pred             EECCC----CHHHHHHHHHhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence            98753    467899999999999999999999987 88888765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]

Probab=99.24  E-value=3.6e-11  Score=112.31  Aligned_cols=124  Identities=20%  Similarity=0.124  Sum_probs=100.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      .+||+||+|.||+++|++| ..-|.+|.+||+.+++..+..        ...     +.....+..|+.+++|+|++|+|
T Consensus         1 ~kIafIGLG~MG~pmA~~L-~~aG~~v~v~~r~~~ka~~~~--------~~~-----Ga~~a~s~~eaa~~aDvVitmv~   66 (286)
T COG2084           1 MKIAFIGLGIMGSPMAANL-LKAGHEVTVYNRTPEKAAELL--------AAA-----GATVAASPAEAAAEADVVITMLP   66 (286)
T ss_pred             CeEEEEcCchhhHHHHHHH-HHCCCEEEEEeCChhhhhHHH--------HHc-----CCcccCCHHHHHHhCCEEEEecC
Confidence            4799999999999999998 577999999999987632221        111     22345678899999999999999


Q ss_pred             CCcccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       246 l~~~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      ..++.+.++.  ...++.+|+|+++||++.-+......+.+++++..+...--=|.-..+
T Consensus        67 ~~~~V~~V~~g~~g~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~  126 (286)
T COG2084          67 DDAAVRAVLFGENGLLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVP  126 (286)
T ss_pred             CHHHHHHHHhCccchhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCch
Confidence            9999988885  578999999999999999999999999999998877644433555544

>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase

Probab=99.22  E-value=4.9e-11  Score=112.50  Aligned_cols=111  Identities=19%  Similarity=0.185  Sum_probs=88.1

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|||||+|.||+.+|+.| ...|.+|.+||++++.. +.+..        .+     .....+.++++++||+|++|+|.
T Consensus         1 ~IgvIG~G~mG~~iA~~l-~~~G~~V~~~dr~~~~~-~~~~~--------~g-----~~~~~~~~~~~~~aDivi~~vp~   65 (291)
T TIGR01505         1 KVGFIGLGIMGSPMSINL-AKAGYQLHVTTIGPEVA-DELLA--------AG-----AVTAETARQVTEQADVIFTMVPD   65 (291)
T ss_pred             CEEEEEecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHH--------CC-----CcccCCHHHHHhcCCEEEEecCC
Confidence            489999999999999998 57899999999987542 22111        11     12245788999999999999998


Q ss_pred             Cccccccc-C-HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          247 DKTTYHLI-N-KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       247 ~~~t~~li-~-~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +++++.++ + ...+..+++|+++||+++....+.+++.+.+++..+.
T Consensus        66 ~~~~~~v~~~~~~~~~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~  113 (291)
T TIGR01505        66 SPQVEEVAFGENGIIEGAKPGKTLVDMSSISPIESKRFAKAVKEKGID  113 (291)
T ss_pred             HHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence            87777665 3 3467789999999999999998888999999876544

This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.

>PRK11559 garR tartronate semialdehyde reductase; Provisional

Probab=99.20  E-value=6.4e-11  Score=111.89  Aligned_cols=123  Identities=18%  Similarity=0.189  Sum_probs=94.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++|||||+|.||+.+|+.| ...|.+|.+||++++.. +.+.        ..+     .....++++++.+||+|++|+|
T Consensus         3 ~~IgviG~G~mG~~~a~~l-~~~g~~v~~~d~~~~~~-~~~~--------~~g-----~~~~~~~~e~~~~~d~vi~~vp   67 (296)
T PRK11559          3 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVYDRNPEAV-AEVI--------AAG-----AETASTAKAVAEQCDVIITMLP   67 (296)
T ss_pred             ceEEEEccCHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHH--------HCC-----CeecCCHHHHHhcCCEEEEeCC
Confidence            4799999999999999998 57899999999987542 2111        111     1234678899999999999999


Q ss_pred             CCcccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       246 l~~~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      .+.+++.++.  ...+..+++|.++||+++......+++.+.+++..+...---|+-.+|
T Consensus        68 ~~~~~~~v~~~~~~~~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~  127 (296)
T PRK11559         68 NSPHVKEVALGENGIIEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP  127 (296)
T ss_pred             CHHHHHHHHcCcchHhhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence            8888777764  346788999999999999998888899999887655443334555544

>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional

Probab=99.14  E-value=2.2e-10  Score=108.48  Aligned_cols=112  Identities=14%  Similarity=0.209  Sum_probs=89.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++|||||+|.||..+|+.|+ ..|.+|++||++++.. +.+.+        .+     .....+..+++++||+|++|+|
T Consensus         2 ~~Ig~IGlG~mG~~mA~~l~-~~G~~V~v~d~~~~~~-~~~~~--------~g-----~~~~~s~~~~~~~aDvVi~~vp   66 (296)
T PRK15461          2 AAIAFIGLGQMGSPMASNLL-KQGHQLQVFDVNPQAV-DALVD--------KG-----ATPAASPAQAAAGAEFVITMLP   66 (296)
T ss_pred             CeEEEEeeCHHHHHHHHHHH-HCCCeEEEEcCCHHHH-HHHHH--------cC-----CcccCCHHHHHhcCCEEEEecC
Confidence            37999999999999999984 6789999999987543 22111        11     2234688899999999999999


Q ss_pred             CCcccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       246 l~~~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      .....+.++.  ...+..+++|.++||++++.....+.+.+.+.+..+.
T Consensus        67 ~~~~~~~vl~~~~~i~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~  115 (296)
T PRK15461         67 NGDLVRSVLFGENGVCEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS  115 (296)
T ss_pred             CHHHHHHHHcCcccHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence            8776776664  3467789999999999999999999999999887665

>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.13  E-value=3.4e-10  Score=107.31  Aligned_cols=113  Identities=19%  Similarity=0.274  Sum_probs=90.0

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc---CCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aDiV~l~  243 (342)
                      +|||||+|+||+.+|+.| ...|.+|++||++++.. +.+.        ..+     .....+.++++++   +|+|++|
T Consensus         2 ~Ig~IGlG~mG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~~--------~~g-----~~~~~s~~~~~~~~~~advVi~~   66 (299)
T PRK12490          2 KLGLIGLGKMGGNMAERL-REDGHEVVGYDVNQEAV-DVAG--------KLG-----ITARHSLEELVSKLEAPRTIWVM   66 (299)
T ss_pred             EEEEEcccHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHH--------HCC-----CeecCCHHHHHHhCCCCCEEEEE
Confidence            699999999999999998 47799999999987542 2211        111     2234688888876   6999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLD  297 (342)
                      +|..+.++.+++ ..+..+++|.++||+++....+..++.+.+++..+.  .+|
T Consensus        67 vp~~~~~~~v~~-~i~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vd  117 (299)
T PRK12490         67 VPAGEVTESVIK-DLYPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVD  117 (299)
T ss_pred             ecCchHHHHHHH-HHhccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEe
Confidence            998778888874 567789999999999999999999999999876654  356

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=99.06  E-value=3.7e-10  Score=107.84  Aligned_cols=97  Identities=23%  Similarity=0.256  Sum_probs=74.6

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..|.|++|||||+|+||+++|+.| +.+|++|+++++......+...        ..     ++. ..+.++++++||+|
T Consensus        13 ~~L~gktIgIIG~GsmG~AlA~~L-~~sG~~Vvv~~r~~~~s~~~A~--------~~-----G~~-~~s~~eaa~~ADVV   77 (330)
T PRK05479         13 SLIKGKKVAIIGYGSQGHAHALNL-RDSGVDVVVGLREGSKSWKKAE--------AD-----GFE-VLTVAEAAKWADVI   77 (330)
T ss_pred             hhhCCCEEEEEeeHHHHHHHHHHH-HHCCCEEEEEECCchhhHHHHH--------HC-----CCe-eCCHHHHHhcCCEE
Confidence            568999999999999999999998 7999999988766433211110        01     121 24889999999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      ++++|.+.. ..+++++.+..|++|+++ -++.|
T Consensus        78 vLaVPd~~~-~~V~~~~I~~~Lk~g~iL-~~a~G  109 (330)
T PRK05479         78 MILLPDEVQ-AEVYEEEIEPNLKEGAAL-AFAHG  109 (330)
T ss_pred             EEcCCHHHH-HHHHHHHHHhcCCCCCEE-EECCC
Confidence            999997655 777778888899999988 55555

>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed

Probab=99.02  E-value=1.9e-09  Score=102.39  Aligned_cols=111  Identities=22%  Similarity=0.283  Sum_probs=88.4

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc---CCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aDiV~l~  243 (342)
                      +|||||+|.||+.+|+.| ...|.+|.+||++++.. +.+.        ..+     .....+.+++++.   +|+|++|
T Consensus         2 ~Ig~IGlG~MG~~mA~~L-~~~g~~v~v~dr~~~~~-~~~~--------~~g-----~~~~~~~~e~~~~~~~~dvvi~~   66 (301)
T PRK09599          2 QLGMIGLGRMGGNMARRL-LRGGHEVVGYDRNPEAV-EALA--------EEG-----ATGADSLEELVAKLPAPRVVWLM   66 (301)
T ss_pred             EEEEEcccHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHH--------HCC-----CeecCCHHHHHhhcCCCCEEEEE
Confidence            799999999999999998 46799999999987543 2211        111     2234678888876   6999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~  293 (342)
                      +|..+.++.++ ...+..+++|.++||++++...+...+.+.+++..+..
T Consensus        67 v~~~~~~~~v~-~~l~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~  115 (301)
T PRK09599         67 VPAGEITDATI-DELAPLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHF  115 (301)
T ss_pred             ecCCcHHHHHH-HHHHhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEE
Confidence            99876777777 45678899999999999999999999999998876653

>PLN02712 arogenate dehydrogenase

Probab=99.00  E-value=1.7e-09  Score=112.69  Aligned_cols=113  Identities=17%  Similarity=0.225  Sum_probs=84.9

Q ss_pred             cccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-cC
Q 019387          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EA  237 (342)
Q Consensus       159 ~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~a  237 (342)
                      .+..+.+++|||||+|.||+.+|+.| +.+|.+|++||+....  +.. ..       .+     +....++++++. ++
T Consensus       363 ~~~~~~~~kIgIIGlG~mG~slA~~L-~~~G~~V~~~dr~~~~--~~a-~~-------~G-----v~~~~~~~el~~~~a  426 (667)
T PLN02712        363 CVNDGSKLKIAIVGFGNFGQFLAKTM-VKQGHTVLAYSRSDYS--DEA-QK-------LG-----VSYFSDADDLCEEHP  426 (667)
T ss_pred             ccCCCCCCEEEEEecCHHHHHHHHHH-HHCcCEEEEEECChHH--HHH-HH-------cC-----CeEeCCHHHHHhcCC
Confidence            35678899999999999999999998 6889999999987532  110 00       11     123467888776 59


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      |+|++|+|. ..+..++.+..+..||+|++++|++.+.-...+.+.+.+..
T Consensus       427 DvVILavP~-~~~~~vi~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~  476 (667)
T PLN02712        427 EVILLCTSI-LSTEKVLKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQ  476 (667)
T ss_pred             CEEEECCCh-HHHHHHHHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccC
Confidence            999999994 67888888766667999999999999875455555555443

>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]

Probab=98.97  E-value=2.6e-09  Score=100.96  Aligned_cols=104  Identities=30%  Similarity=0.409  Sum_probs=89.5

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..+.||++.|.|||..|+.+|.++ ++.|++|++.+..|-..+++..+.|               ...++++....+|++
T Consensus       205 ~liaGK~vVV~GYG~vGrG~A~~~-rg~GA~ViVtEvDPI~AleA~MdGf---------------~V~~m~~Aa~~gDif  268 (420)
T COG0499         205 VLLAGKNVVVAGYGWVGRGIAMRL-RGMGARVIVTEVDPIRALEAAMDGF---------------RVMTMEEAAKTGDIF  268 (420)
T ss_pred             eeecCceEEEecccccchHHHHHh-hcCCCeEEEEecCchHHHHHhhcCc---------------EEEEhHHhhhcCCEE
Confidence            458999999999999999999996 8999999999888877777766544               346899999999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~  284 (342)
                      +.+.-    ++++|..++|..||+|+++-|.|.-+. ||..+|.+
T Consensus       269 iT~TG----nkdVi~~eh~~~MkDgaIl~N~GHFd~EI~~~~L~~  309 (420)
T COG0499         269 VTATG----NKDVIRKEHFEKMKDGAILANAGHFDVEIDVAGLEE  309 (420)
T ss_pred             EEccC----CcCccCHHHHHhccCCeEEecccccceeccHHHHHH
Confidence            98864    689999999999999999999997776 67776653

>PLN02350 phosphogluconate dehydrogenase (decarboxylating)

Probab=98.93  E-value=5.2e-09  Score=105.17  Aligned_cols=128  Identities=11%  Similarity=0.125  Sum_probs=100.8

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc---CCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aDiV~l~  243 (342)
                      +|||||+|.||+.+|++|+ .-|.+|.+||++++.. +.+.+...    ..+...  .....+++++.+.   +|+|++|
T Consensus         8 ~IG~IGLG~MG~~mA~nL~-~~G~~V~V~NRt~~k~-~~l~~~~~----~~Ga~~--~~~a~s~~e~v~~l~~~dvIi~~   79 (493)
T PLN02350          8 RIGLAGLAVMGQNLALNIA-EKGFPISVYNRTTSKV-DETVERAK----KEGNLP--LYGFKDPEDFVLSIQKPRSVIIL   79 (493)
T ss_pred             CEEEEeeHHHHHHHHHHHH-hCCCeEEEECCCHHHH-HHHHHhhh----hcCCcc--cccCCCHHHHHhcCCCCCEEEEE
Confidence            6999999999999999985 6799999999987643 33222100    001111  1134688888876   9999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      +|..+.++.++ ...+..+++|.++||++....-+...+.+.+++..+.....=|.-.++
T Consensus        80 v~~~~aV~~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~  138 (493)
T PLN02350         80 VKAGAPVDQTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEE  138 (493)
T ss_pred             CCCcHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHH
Confidence            99999888888 567888999999999999999999999999998888877777877776

>PTZ00142 6-phosphogluconate dehydrogenase; Provisional

Probab=98.85  E-value=1.1e-08  Score=102.42  Aligned_cols=128  Identities=16%  Similarity=0.242  Sum_probs=98.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh---cCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~---~aDiV~l  242 (342)
                      .+|||||+|.||..+|+.| ..-|.+|.+||++++.. +.+.+.    ....+   .......++++++.   ++|+|++
T Consensus         2 ~~IgvIGLG~MG~~lA~nL-~~~G~~V~v~dr~~~~~-~~l~~~----~~~~g---~~i~~~~s~~e~v~~l~~~d~Iil   72 (470)
T PTZ00142          2 SDIGLIGLAVMGQNLALNI-ASRGFKISVYNRTYEKT-EEFVKK----AKEGN---TRVKGYHTLEELVNSLKKPRKVIL   72 (470)
T ss_pred             CEEEEEeEhHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHHHh----hhhcC---CcceecCCHHHHHhcCCCCCEEEE
Confidence            4799999999999999998 46789999999987653 222110    00001   11223568899886   4899999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      ++|..+.++.++ ++.+..+++|.++||++.+.--|...+.+.+++..+.....=|.-.++
T Consensus        73 ~v~~~~~v~~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~  132 (470)
T PTZ00142         73 LIKAGEAVDETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE  132 (470)
T ss_pred             EeCChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence            999888888888 456778999999999999999999999999998888766666666655

>PRK15059 tartronate semialdehyde reductase; Provisional

Probab=98.84  E-value=1.4e-08  Score=96.01  Aligned_cols=113  Identities=15%  Similarity=0.125  Sum_probs=86.5

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|||||+|+||+.+|+.| ...|.+|.+||+.+..  +.+.        ..+     .....+..+++++||+|++|+|.
T Consensus         2 ~Ig~IGlG~MG~~ma~~L-~~~G~~v~v~~~~~~~--~~~~--------~~g-----~~~~~s~~~~~~~advVi~~v~~   65 (292)
T PRK15059          2 KLGFIGLGIMGTPMAINL-ARAGHQLHVTTIGPVA--DELL--------SLG-----AVSVETARQVTEASDIIFIMVPD   65 (292)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCeEEEEeCCHhH--HHHH--------HcC-----CeecCCHHHHHhcCCEEEEeCCC
Confidence            699999999999999998 4678999999987531  2211        111     22346788899999999999998


Q ss_pred             CcccccccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 019387          247 DKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (342)
Q Consensus       247 ~~~t~~li~~--~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLD  297 (342)
                      .++.+.++..  ..+..+++|.++|+++....-+...+.+.+++..+.  .+|
T Consensus        66 ~~~v~~v~~~~~g~~~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~--~vd  116 (292)
T PRK15059         66 TPQVEEVLFGENGCTKASLKGKTIVDMSSISPIETKRFARQVNELGGD--YLD  116 (292)
T ss_pred             hHHHHHHHcCCcchhccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC--EEE
Confidence            7777766632  357778999999999998888888888888775443  445

>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.84  E-value=2.1e-07  Score=87.08  Aligned_cols=171  Identities=16%  Similarity=0.187  Sum_probs=109.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++|+.+.+.     ++.|+++++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvq~Plp~~i~~~~i~~~I~p~--K-------DVDGl~~  124 (285)
T PRK14189         55 KACEDNGFHSLKDRYPA-DLSEAELLARIDELNRDPKIHGILVQLPLPKHIDSHKVIEAIAPE--K-------DVDGFHV  124 (285)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhhcCcc--c-------CcccCCh
Confidence            44566788887766543 357788876653     24688998864  344443 33333221  1       2222210


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHH-HHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~I-G~~vA  181 (342)
                      .   ..|-...+.++ ....++.-++.++    ++                     .+.++.||++.|||.|.+ |+.+|
T Consensus       125 ~---n~g~l~~~~~~-~~PcTp~aii~lL----~~---------------------~~i~l~Gk~vvViGrs~iVGkPla  175 (285)
T PRK14189        125 A---NAGALMTGQPL-FRPCTPYGVMKML----ES---------------------IGIPLRGAHAVVIGRSNIVGKPMA  175 (285)
T ss_pred             h---hhhHhhCCCCC-CcCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence            0   11111112222 3444555444332    11                     135789999999999999 99999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ...|++|+.+..+                            ..++.+.+++||+|+.++|    +.++|+.   ++
T Consensus       176 ~lL-~~~~atVt~~hs~----------------------------t~~l~~~~~~ADIVV~avG----~~~~i~~---~~  219 (285)
T PRK14189        176 MLL-LQAGATVTICHSK----------------------------TRDLAAHTRQADIVVAAVG----KRNVLTA---DM  219 (285)
T ss_pred             HHH-HHCCCEEEEecCC----------------------------CCCHHHHhhhCCEEEEcCC----CcCccCH---HH
Confidence            998 6889999986432                            1478899999999999998    4578888   56


Q ss_pred             CCCCcEEEEcCCCcc
Q 019387          262 MKKEAILVNCSRGPV  276 (342)
Q Consensus       262 mk~ga~lINvaRG~~  276 (342)
                      +|+|+++||+|--.+
T Consensus       220 ik~gavVIDVGin~~  234 (285)
T PRK14189        220 VKPGATVIDVGMNRD  234 (285)
T ss_pred             cCCCCEEEEcccccc
Confidence            889999999996543

>PLN02256 arogenate dehydrogenase

Probab=98.83  E-value=1.2e-08  Score=97.07  Aligned_cols=107  Identities=15%  Similarity=0.213  Sum_probs=78.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV~l  242 (342)
                      ++++|||||+|.||+.+|+.| +..|.+|++||++......   ..       .+     +....++++++ .++|+|++
T Consensus        35 ~~~kI~IIG~G~mG~slA~~L-~~~G~~V~~~d~~~~~~~a---~~-------~g-----v~~~~~~~e~~~~~aDvVil   98 (304)
T PLN02256         35 RKLKIGIVGFGNFGQFLAKTF-VKQGHTVLATSRSDYSDIA---AE-------LG-----VSFFRDPDDFCEEHPDVVLL   98 (304)
T ss_pred             CCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECccHHHHH---HH-------cC-----CeeeCCHHHHhhCCCCEEEE
Confidence            467999999999999999997 6789999999988532111   01       11     12245778876 46999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      |+|. ..+..++.+-....+++++++++++.+.-+..+++.+.+.
T Consensus        99 avp~-~~~~~vl~~l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~  142 (304)
T PLN02256         99 CTSI-LSTEAVLRSLPLQRLKRSTLFVDVLSVKEFPKNLLLQVLP  142 (304)
T ss_pred             ecCH-HHHHHHHHhhhhhccCCCCEEEecCCchHHHHHHHHHhCC
Confidence            9995 4667777554356789999999999976555556666554

>PLN02858 fructose-bisphosphate aldolase

Probab=98.80  E-value=2e-08  Score=111.96  Aligned_cols=111  Identities=14%  Similarity=0.170  Sum_probs=91.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .++||+||+|.||..+|++|+ .-|.+|.+||++++.. +.+.+        .     +....++..++.++||+|++|+
T Consensus         4 ~~~IGfIGLG~MG~~mA~~L~-~~G~~v~v~dr~~~~~-~~l~~--------~-----Ga~~~~s~~e~a~~advVi~~l   68 (1378)
T PLN02858          4 AGVVGFVGLDSLSFELASSLL-RSGFKVQAFEISTPLM-EKFCE--------L-----GGHRCDSPAEAAKDAAALVVVL   68 (1378)
T ss_pred             CCeEEEEchhHHHHHHHHHHH-HCCCeEEEEcCCHHHH-HHHHH--------c-----CCeecCCHHHHHhcCCEEEEEc
Confidence            568999999999999999984 6799999999987543 22211        1     2234579999999999999999


Q ss_pred             CCCccccccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          245 VLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       245 pl~~~t~~li--~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      |..+..+.++  ....+..+++|.++||++.-..-....+.+.+++..
T Consensus        69 ~~~~~v~~V~~g~~g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g  116 (1378)
T PLN02858         69 SHPDQVDDVFFGDEGAAKGLQKGAVILIRSTILPLQLQKLEKKLTERK  116 (1378)
T ss_pred             CChHHHHHHHhchhhHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC
Confidence            9988888887  356788899999999999999888899999987755

>PLN02858 fructose-bisphosphate aldolase

Probab=98.80  E-value=1.8e-08  Score=112.30  Aligned_cols=109  Identities=20%  Similarity=0.265  Sum_probs=88.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .++|||||+|+||..+|++| ...|.+|.+||++++.. +.+..        .+     .....+..+++++||+|++|+
T Consensus       324 ~~~IGfIGlG~MG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l~~--------~G-----a~~~~s~~e~~~~aDvVi~~V  388 (1378)
T PLN02858        324 VKRIGFIGLGAMGFGMASHL-LKSNFSVCGYDVYKPTL-VRFEN--------AG-----GLAGNSPAEVAKDVDVLVIMV  388 (1378)
T ss_pred             CCeEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHH--------cC-----CeecCCHHHHHhcCCEEEEec
Confidence            47899999999999999998 57899999999987542 22111        11     112468899999999999999


Q ss_pred             CCCccccccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          245 VLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       245 pl~~~t~~li--~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      |..++++.++  +...+..+++|.++||++....-....+.+.+++
T Consensus       389 ~~~~~v~~Vl~g~~g~~~~l~~g~ivVd~STvsP~~~~~la~~l~~  434 (1378)
T PLN02858        389 ANEVQAENVLFGDLGAVSALPAGASIVLSSTVSPGFVIQLERRLEN  434 (1378)
T ss_pred             CChHHHHHHHhchhhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence            9888888887  3567888999999999999988888889888877

>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating)

Probab=98.80  E-value=4e-08  Score=93.16  Aligned_cols=109  Identities=18%  Similarity=0.270  Sum_probs=83.3

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH---hhcCCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---l~~aDiV~l~  243 (342)
                      +|||||+|+||..+|+.| ...|.+|.+||++++.. +.+.+        .+..     ...+++++   +.++|+|++|
T Consensus         2 ~Ig~IGlG~mG~~la~~L-~~~g~~V~~~dr~~~~~-~~l~~--------~g~~-----~~~s~~~~~~~~~~~dvIi~~   66 (298)
T TIGR00872         2 QLGLIGLGRMGANIVRRL-AKRGHDCVGYDHDQDAV-KAMKE--------DRTT-----GVANLRELSQRLSAPRVVWVM   66 (298)
T ss_pred             EEEEEcchHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHHH--------cCCc-----ccCCHHHHHhhcCCCCEEEEE
Confidence            799999999999999998 46799999999987643 22111        1111     12345544   4568999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +|.. .++.++ ++....+++|.++||++.+...+...+.+.+++..+.
T Consensus        67 vp~~-~~~~v~-~~l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~  113 (298)
T TIGR00872        67 VPHG-IVDAVL-EELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIH  113 (298)
T ss_pred             cCch-HHHHHH-HHHHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCe
Confidence            9976 777777 4566788999999999999888999999988876654

This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.

>TIGR00465 ilvC ketol-acid reductoisomerase

Probab=98.77  E-value=2.8e-08  Score=94.81  Aligned_cols=98  Identities=26%  Similarity=0.284  Sum_probs=69.3

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      |.||+|||||+|+||+++|+.| +.+|++|+++++......+...        ..+     +. ..+.++++++||+|++
T Consensus         1 l~~kkIgiIG~G~mG~AiA~~L-~~sG~~Viv~~~~~~~~~~~a~--------~~G-----v~-~~s~~ea~~~ADiVvL   65 (314)
T TIGR00465         1 LKGKTVAIIGYGSQGHAQALNL-RDSGLNVIVGLRKGGASWKKAT--------EDG-----FK-VGTVEEAIPQADLIMN   65 (314)
T ss_pred             CCcCEEEEEeEcHHHHHHHHHH-HHCCCeEEEEECcChhhHHHHH--------HCC-----CE-ECCHHHHHhcCCEEEE
Confidence            5789999999999999999997 6889998876554332222211        111     11 2468888999999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCccc
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v  277 (342)
                      ++|... ....+.++....+++|. +|.++-|=-+
T Consensus        66 aVpp~~-~~~~v~~ei~~~l~~g~-iVs~aaG~~i   98 (314)
T TIGR00465        66 LLPDEV-QHEVYEAEIQPLLKEGK-TLGFSHGFNI   98 (314)
T ss_pred             eCCcHh-HHHHHHHHHHhhCCCCc-EEEEeCCccH
Confidence            999432 34445566667788885 8888888544

This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=98.75  E-value=1.2e-06  Score=88.29  Aligned_cols=231  Identities=19%  Similarity=0.177  Sum_probs=126.6

Q ss_pred             CCchHHHHHHHhCCCeEEEecCCC--CCCCHHHHHHH--------hCCCceEEEecCCCCccHHHHHHhhccCCceEEEc
Q 019387           24 MPGTRWINLLIEQDCRVEICTQKK--TILSVEDIIAL--------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        24 ~~~~~~~~~l~~~~~~v~~~~~~~--~~~~~~e~~~~--------~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~   93 (342)
                      +.|+. .+.|.+.|++|.+.....  ...+.++..+.        .-+++|+|+.- ..+ +.+.++.+.. |--+++..
T Consensus        17 ltP~~-v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~~~~adiIlkV-~~P-~~~e~~~l~~-g~tli~~l   92 (511)
T TIGR00561        17 ATPKT-VQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDGTLFWQSDIILKV-NAP-SDAEIAELPA-GKALVSFI   92 (511)
T ss_pred             cCHHH-HHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecccchhcCCEEEEe-CCC-CHHHHHhcCC-CCEEEEEc
Confidence            33433 678888999998765422  23455554431        01246777632 222 3455677665 32344444


Q ss_pred             cccCCccChhHHHhCCeeEecCCCCC--c--------hhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCccccccc
Q 019387           94 AVGYNNVDVNAANKYGIAVGNTPGVL--T--------ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLL  163 (342)
Q Consensus        94 ~~G~d~id~~~~~~~gI~V~n~~~~~--~--------~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L  163 (342)
                      .-..|.=-++.+.++||.+..-....  +        .++++.+=      +|-...+.+.+..- +.+.  ....| .+
T Consensus        93 ~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iAG------y~Avi~Aa~~lgr~-~~g~--~taag-~v  162 (511)
T TIGR00561        93 WPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIAG------YRAIIEAAHEFGRF-FTGQ--ITAAG-KV  162 (511)
T ss_pred             CccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHHH------HHHHHHHHHHhhhh-cCCc--eecCC-CC
Confidence            33334334677889999887633111  1        22233222      12221111111110 0000  00011 35


Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhh-----hccCCCCccccccCC---------
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL-----KANGEQPVTWKRASS---------  229 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~---------  229 (342)
                      .+.++.|+|.|.+|...++.+ +++|++|.++|.++... +.. +.++...     .++++...++....+         
T Consensus       163 p~akVlViGaG~iGl~Aa~~a-k~lGA~V~v~d~~~~rl-e~a-~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~  239 (511)
T TIGR00561       163 PPAKVLVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVK-EQV-QSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEME  239 (511)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH-HHcCCeEEeccccccccccccceeecCHHHHHHHHH
Confidence            578999999999999999985 89999999999987642 221 1121110     001111111111111         


Q ss_pred             -HHHHhhcCCEEEEcC--CCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          230 -MDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       230 -l~~ll~~aDiV~l~~--pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                       +.+.++++|+|+.++  |. .....++.++.++.||+|+++||++
T Consensus       240 ~~~e~~~~~DIVI~TalipG-~~aP~Lit~emv~~MKpGsvIVDlA  284 (511)
T TIGR00561       240 LFAAQAKEVDIIITTALIPG-KPAPKLITEEMVDSMKAGSVIVDLA  284 (511)
T ss_pred             HHHHHhCCCCEEEECcccCC-CCCCeeehHHHHhhCCCCCEEEEee
Confidence             456678899998876  32 2234789999999999999999986

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00518 alaDH alanine dehydrogenase

Probab=98.74  E-value=4.4e-08  Score=95.66  Aligned_cols=109  Identities=19%  Similarity=0.394  Sum_probs=78.4

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .+.+++|.|+|.|.+|+.+++.+ +++|++|.++|+++.. .+.....++...      .........+.+.++++|+|+
T Consensus       164 ~l~~~~VlViGaG~vG~~aa~~a-~~lGa~V~v~d~~~~~-~~~l~~~~g~~v------~~~~~~~~~l~~~l~~aDvVI  235 (370)
T TIGR00518       164 GVEPGDVTIIGGGVVGTNAAKMA-NGLGATVTILDINIDR-LRQLDAEFGGRI------HTRYSNAYEIEDAVKRADLLI  235 (370)
T ss_pred             CCCCceEEEEcCCHHHHHHHHHH-HHCCCeEEEEECCHHH-HHHHHHhcCcee------EeccCCHHHHHHHHccCCEEE
Confidence            36788999999999999999996 7999999999998653 222211111000      001111245778889999999


Q ss_pred             EcCCCC-cccccccCHHHHhcCCCCcEEEEcC--CCcccC
Q 019387          242 LHPVLD-KTTYHLINKERLATMKKEAILVNCS--RGPVID  278 (342)
Q Consensus       242 l~~pl~-~~t~~li~~~~l~~mk~ga~lINva--RG~~vd  278 (342)
                      .+++.+ ..+..+|+++.++.||+|+++||++  .|+.+.
T Consensus       236 ~a~~~~g~~~p~lit~~~l~~mk~g~vIvDva~d~GG~~e  275 (370)
T TIGR00518       236 GAVLIPGAKAPKLVSNSLVAQMKPGAVIVDVAIDQGGCVE  275 (370)
T ss_pred             EccccCCCCCCcCcCHHHHhcCCCCCEEEEEecCCCCCcc
Confidence            998652 3456789999999999999999986  555543

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase

Probab=98.74  E-value=3.3e-08  Score=93.21  Aligned_cols=111  Identities=22%  Similarity=0.234  Sum_probs=83.0

Q ss_pred             EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcc
Q 019387          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (342)
Q Consensus       170 IvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~  249 (342)
                      |||+|.||..+|+.| ...|.+|.+||++++.. +.+.        ..+     .....+..+++++||+|++|+|..++
T Consensus         1 ~IGlG~mG~~mA~~L-~~~G~~V~v~dr~~~~~-~~l~--------~~g-----~~~~~s~~~~~~~advVil~vp~~~~   65 (288)
T TIGR01692         1 FIGLGNMGGPMAANL-LKAGHPVRVFDLFPDAV-EEAV--------AAG-----AQAAASPAEAAEGADRVITMLPAGQH   65 (288)
T ss_pred             CCcccHhHHHHHHHH-HhCCCeEEEEeCCHHHH-HHHH--------HcC-----CeecCCHHHHHhcCCEEEEeCCChHH
Confidence            689999999999998 46789999999987542 2211        111     22346889999999999999998777


Q ss_pred             cccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 019387          250 TYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (342)
Q Consensus       250 t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLD  297 (342)
                      .+.++.  ...+..+++|.++||++.-..-....+.+.+++..+.  .+|
T Consensus        66 ~~~v~~g~~~l~~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~--~vd  113 (288)
T TIGR01692        66 VISVYSGDEGILPKVAKGSLLIDCSTIDPDSARKLAELAAAHGAV--FMD  113 (288)
T ss_pred             HHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEE
Confidence            777763  4566788999999999976666667777777765444  355

This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).

>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating

Probab=98.73  E-value=4.9e-08  Score=97.92  Aligned_cols=126  Identities=21%  Similarity=0.244  Sum_probs=93.6

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh---hcCCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll---~~aDiV~l~  243 (342)
                      .|||||+|.||+.+|+.|+ .-|.+|.+||++++.. +.+.+.+        ..........+++++.   +++|+|++|
T Consensus         1 ~IG~IGLG~MG~~mA~nL~-~~G~~V~v~drt~~~~-~~l~~~~--------~~g~~~~~~~s~~e~v~~l~~~dvIil~   70 (467)
T TIGR00873         1 DIGVIGLAVMGSNLALNMA-DHGFTVSVYNRTPEKT-DEFLAEH--------AKGKKIVGAYSIEEFVQSLERPRKIMLM   70 (467)
T ss_pred             CEEEEeeHHHHHHHHHHHH-hcCCeEEEEeCCHHHH-HHHHhhc--------cCCCCceecCCHHHHHhhcCCCCEEEEE
Confidence            3899999999999999984 6799999999987643 2222110        0000112235667766   468999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      +|..+.+..++ ...+..+++|.++||++....-+...+.+.+++..+....-=|.-.++
T Consensus        71 v~~~~~v~~Vi-~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~  129 (467)
T TIGR00873        71 VKAGAPVDAVI-NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE  129 (467)
T ss_pred             CCCcHHHHHHH-HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence            99877888887 456678899999999999988898889999988777655555666655

This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.

>KOG0409 consensus Predicted dehydrogenase [General function prediction only]

Probab=98.72  E-value=4.1e-08  Score=91.06  Aligned_cols=116  Identities=17%  Similarity=0.165  Sum_probs=91.5

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      ....++||+||+|+||..++..|. .-|.+|++||++.+... .+.+             .+.....+..|+.+.||+|+
T Consensus        32 ~~s~~~iGFIGLG~MG~~M~~nLi-k~G~kVtV~dr~~~k~~-~f~~-------------~Ga~v~~sPaeVae~sDvvi   96 (327)
T KOG0409|consen   32 TPSKTRIGFIGLGNMGSAMVSNLI-KAGYKVTVYDRTKDKCK-EFQE-------------AGARVANSPAEVAEDSDVVI   96 (327)
T ss_pred             CcccceeeEEeeccchHHHHHHHH-HcCCEEEEEeCcHHHHH-HHHH-------------hchhhhCCHHHHHhhcCEEE
Confidence            345789999999999999999874 67999999999886531 2111             12234578999999999999


Q ss_pred             EcCCCCcccccccC--HHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCce
Q 019387          242 LHPVLDKTTYHLIN--KERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       242 l~~pl~~~t~~li~--~~~l~~mk~ga~l-INvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      .++|...+.+.++.  ...|+..++|... |+.+.-+.--...|.++++....+
T Consensus        97 tmv~~~~~v~~v~~g~~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~~  150 (327)
T KOG0409|consen   97 TMVPNPKDVKDVLLGKSGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGGR  150 (327)
T ss_pred             EEcCChHhhHHHhcCCCcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCCe
Confidence            99999888888774  3578888888777 899988877788888988876443

>PRK05225 ketol-acid reductoisomerase; Validated

Probab=98.71  E-value=1.6e-08  Score=99.17  Aligned_cols=96  Identities=19%  Similarity=0.223  Sum_probs=67.6

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC------chhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY------QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll  234 (342)
                      ..|.||+|+|||||++|+.-|..| +..|.+|.+--|.      .+....+         ..     .++ ...+++|++
T Consensus        32 ~~LkgKtIaIIGyGSqG~AqAlNL-rdSGvnVvvglr~~~id~~~~s~~kA---------~~-----dGF-~v~~~~Ea~   95 (487)
T PRK05225         32 SYLKGKKIVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRKA---------TE-----NGF-KVGTYEELI   95 (487)
T ss_pred             HHhCCCEEEEEccCHHHHHHhCCC-ccccceeEEeccccccccccchHHHH---------Hh-----cCC-ccCCHHHHH
Confidence            579999999999999999666664 5666666622111      2111110         00     122 236899999


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      ++||+|++++|.+ + ++.+.++.+..||+|+.|. .|.|=
T Consensus        96 ~~ADvVviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHGF  133 (487)
T PRK05225         96 PQADLVINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHGF  133 (487)
T ss_pred             HhCCEEEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCCc
Confidence            9999999999988 3 7888899999999998775 33443

>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]

Probab=98.71  E-value=5e-08  Score=90.40  Aligned_cols=95  Identities=23%  Similarity=0.438  Sum_probs=81.8

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      -+.||.+.|.|||.+|+..|+.| ++||++|++....|-..+.+..+.|               ...+++|+.++.|+++
T Consensus       211 M~aGKv~Vv~GYGdVGKgCaqaL-kg~g~~VivTEiDPI~ALQAaMeG~---------------~V~tm~ea~~e~difV  274 (434)
T KOG1370|consen  211 MIAGKVAVVCGYGDVGKGCAQAL-KGFGARVIVTEIDPICALQAAMEGY---------------EVTTLEEAIREVDIFV  274 (434)
T ss_pred             eecccEEEEeccCccchhHHHHH-hhcCcEEEEeccCchHHHHHHhhcc---------------EeeeHHHhhhcCCEEE
Confidence            47899999999999999999997 8999999998777766666555444               3579999999999999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      .+.    -.+.+|..++|.+||+++++-|++.-.+
T Consensus       275 TtT----Gc~dii~~~H~~~mk~d~IvCN~Ghfd~  305 (434)
T KOG1370|consen  275 TTT----GCKDIITGEHFDQMKNDAIVCNIGHFDT  305 (434)
T ss_pred             Ecc----CCcchhhHHHHHhCcCCcEEeccccccc
Confidence            765    4689999999999999999999998665

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.71  E-value=3.6e-08  Score=93.85  Aligned_cols=85  Identities=22%  Similarity=0.306  Sum_probs=68.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+++|||||+|+||+.+|+.| ...|.+|.+|+++..                           .+++++++++|+|+++
T Consensus         3 ~~m~I~iiG~G~~G~~lA~~l-~~~G~~V~~~~r~~~---------------------------~~~~~~~~~advvi~~   54 (308)
T PRK14619          3 QPKTIAILGAGAWGSTLAGLA-SANGHRVRVWSRRSG---------------------------LSLAAVLADADVIVSA   54 (308)
T ss_pred             CCCEEEEECccHHHHHHHHHH-HHCCCEEEEEeCCCC---------------------------CCHHHHHhcCCEEEEE
Confidence            357899999999999999998 578999999998642                           4678889999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCccc
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v  277 (342)
                      +|. +..+.++..-....+++++++|++++|-..
T Consensus        55 vp~-~~~~~v~~~l~~~~~~~~~ivi~~s~gi~~   87 (308)
T PRK14619         55 VSM-KGVRPVAEQVQALNLPPETIIVTATKGLDP   87 (308)
T ss_pred             CCh-HHHHHHHHHHHHhcCCCCcEEEEeCCcccC
Confidence            997 567777744212247889999999885443

>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.66  E-value=2.3e-07  Score=88.74  Aligned_cols=141  Identities=16%  Similarity=0.196  Sum_probs=93.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHh-hhhhhhhccCC----CCccccccCCHHHHhhcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVT-AYGQFLKANGE----QPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~--~~~~-~~~~~~~~~~~----~~~~~~~~~~l~~ll~~aD  238 (342)
                      ++|||||.|.||..+|..++ ..|.+|+.||+.++....  .... ....+ ...+.    .........++++.+++||
T Consensus         8 ~~VaVIGaG~MG~giA~~~a-~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~~~~i~~~~~l~~av~~aD   85 (321)
T PRK07066          8 KTFAAIGSGVIGSGWVARAL-AHGLDVVAWDPAPGAEAALRANVANAWPAL-ERQGLAPGASPARLRFVATIEACVADAD   85 (321)
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHH-HHcCCChhhHHhhceecCCHHHHhcCCC
Confidence            68999999999999999985 679999999998754211  1111 11111 11111    1112234568999999999


Q ss_pred             EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      +|+-|+|-+.+.+.-+-++.-+.++++++| ..+..+ +...++.++++. .-+.+++=-|.+-+  |-+-+.|+
T Consensus        86 lViEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~-l~~s~la~~~~~-p~R~~g~HffnP~~~~pLVEVv~g  157 (321)
T PRK07066         86 FIQESAPEREALKLELHERISRAAKPDAII-ASSTSG-LLPTDFYARATH-PERCVVGHPFNPVYLLPLVEVLGG  157 (321)
T ss_pred             EEEECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCc-cCHHHHHHhcCC-cccEEEEecCCccccCceEEEeCC
Confidence            999999999998888888888999999854 444443 466778887743 34445554443322  44445554

>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.65  E-value=8.5e-07  Score=83.00  Aligned_cols=170  Identities=18%  Similarity=0.256  Sum_probs=107.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++|+.+.+..     +.|+|+++.+  ..+++. ++..++-.  |       -+|.+--
T Consensus        55 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivqlPlp~~i~~~~i~~~I~p~--K-------DVDGl~~  124 (284)
T PRK14179         55 RSALAAGFKSEVVRLPE-TISQEELLDLIERYNQDPTWHGILVQLPLPKHINEEKILLAIDPK--K-------DVDGFHP  124 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--c-------cccccCH
Confidence            44566788887766544 3567878766532     4689999854  344443 22222211  1       2232210


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEec-CHHHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~-G~IG~~vA  181 (342)
                      .   ..|-...+.+. ....++.-++.++-    .                     .+.++.||+++|||. |.+|+++|
T Consensus       125 ~---N~g~l~~~~~~-~~PcTp~avi~lL~----~---------------------~~i~l~Gk~v~vIG~S~ivG~Pla  175 (284)
T PRK14179        125 M---NTGHLWSGRPV-MIPCTPAGIMEMFR----E---------------------YNVELEGKHAVVIGRSNIVGKPMA  175 (284)
T ss_pred             h---hHHHHhCCCCC-CcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcCcHHHH
Confidence            0   11111122222 45566666543332    1                     135789999999999 99999999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..-|++|.+|...                            ..++++..++||+|+.+++.    .+++....   
T Consensus       176 ~lL-~~~gatVtv~~s~----------------------------t~~l~~~~~~ADIVI~avg~----~~~v~~~~---  219 (284)
T PRK14179        176 QLL-LDKNATVTLTHSR----------------------------TRNLAEVARKADILVVAIGR----GHFVTKEF---  219 (284)
T ss_pred             HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEecCc----cccCCHHH---
Confidence            998 4679999988321                            13788999999999999985    34566654   


Q ss_pred             CCCCcEEEEcCCCc
Q 019387          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~ga~lINvaRG~  275 (342)
                      +|+|+++||+|--.
T Consensus       220 ik~GavVIDvgin~  233 (284)
T PRK14179        220 VKEGAVVIDVGMNR  233 (284)
T ss_pred             ccCCcEEEEeccee
Confidence            88999999998443

>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.64  E-value=1.9e-06  Score=81.34  Aligned_cols=170  Identities=17%  Similarity=0.175  Sum_probs=105.7

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++|+.+.+..     +.|+|+++.+  ..+++. +++.++-.         --+|.+--
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~i~~lN~d~~V~GIlvq~Plp~~~~~~~i~~~I~p~---------KDVDGl~~  124 (296)
T PRK14188         55 KQTKEAGMASFEHKLPA-DTSQAELLALIARLNADPAIHGILVQLPLPKHLDSEAVIQAIDPE---------KDVDGLHV  124 (296)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCHHHHHhccCcc---------cccccCCh
Confidence            44566788877665443 3577888776642     4689998854  344443 33332211         12232211


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEe-cCHHHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG-~G~IG~~vA  181 (342)
                      .   ..|-...+.+ .....++.-++.++=    .                     .+.++.||+|+||| .|.+|+++|
T Consensus       125 ~---n~g~l~~~~~-~~~PcTp~ai~~ll~----~---------------------~~i~~~Gk~V~viGrs~~mG~PmA  175 (296)
T PRK14188        125 V---NAGRLATGET-ALVPCTPLGCMMLLR----R---------------------VHGDLSGLNAVVIGRSNLVGKPMA  175 (296)
T ss_pred             h---hHHHHhCCCC-CCcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEEcCCcchHHHHH
Confidence            0   0111111222 244555655554321    1                     12468999999999 999999999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|.+|+.+.                            .++++++++||+|+++++..+    ++.+..   
T Consensus       176 ~~L-~~~g~tVtv~~~rT----------------------------~~l~e~~~~ADIVIsavg~~~----~v~~~~---  219 (296)
T PRK14188        176 QLL-LAANATVTIAHSRT----------------------------RDLPAVCRRADILVAAVGRPE----MVKGDW---  219 (296)
T ss_pred             HHH-HhCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCChh----hcchhe---
Confidence            998 46699999995321                            257888999999999998633    555543   


Q ss_pred             CCCCcEEEEcCCCc
Q 019387          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~ga~lINvaRG~  275 (342)
                      +|+|+++||+|--.
T Consensus       220 lk~GavVIDvGin~  233 (296)
T PRK14188        220 IKPGATVIDVGINR  233 (296)
T ss_pred             ecCCCEEEEcCCcc
Confidence            89999999998544

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=98.64  E-value=9e-08  Score=90.52  Aligned_cols=116  Identities=24%  Similarity=0.300  Sum_probs=78.0

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH--Hh-hhhhhhhccCCCC-------cc-ccccCCHHHHh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VT-AYGQFLKANGEQP-------VT-WKRASSMDEVL  234 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~--~~-~~~~~~~~~~~~~-------~~-~~~~~~l~~ll  234 (342)
                      ++|||||.|.||..+|+.|+ ..|.+|++||++++......  .. .+..+. ..+...       .+ ....++. +.+
T Consensus         5 ~~V~vIG~G~mG~~iA~~l~-~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~-~~~   81 (295)
T PLN02545          5 KKVGVVGAGQMGSGIAQLAA-AAGMDVWLLDSDPAALSRGLDSISSSLARLV-KKGKMSQEEADATLGRIRCTTNL-EEL   81 (295)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhceEeeCCH-HHh
Confidence            68999999999999999984 67999999999875421110  00 000011 111000       00 1112344 467


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHH
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lI-NvaRG~~vd~~aL~~aL~  287 (342)
                      ++||+|+.|+|.+++.+..+-++....++++++|+ |++.-   ....+.+.+.
T Consensus        82 ~~aD~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i---~~~~l~~~~~  132 (295)
T PLN02545         82 RDADFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSI---SITRLASATQ  132 (295)
T ss_pred             CCCCEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCC---CHHHHHhhcC
Confidence            99999999999999988888777777899999987 77664   4556666664

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=98.63  E-value=9.5e-07  Score=79.02  Aligned_cols=111  Identities=20%  Similarity=0.313  Sum_probs=79.1

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-cCC
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EAD  238 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~aD  238 (342)
                      +.+++||+++|+|+|+||+.+|+.| ..+|++|+++|++++.. +.+.+.+       +     ... .+.++++. +||
T Consensus        23 ~~~l~gk~v~I~G~G~vG~~~A~~L-~~~G~~Vvv~D~~~~~~-~~~~~~~-------g-----~~~-v~~~~l~~~~~D   87 (200)
T cd01075          23 TDSLEGKTVAVQGLGKVGYKLAEHL-LEEGAKLIVADINEEAV-ARAAELF-------G-----ATV-VAPEEIYSVDAD   87 (200)
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHHHHHc-------C-----CEE-EcchhhccccCC
Confidence            3578999999999999999999998 68999999999886432 2211111       1     111 12345554 799


Q ss_pred             EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +++.|..     .++|+++.+..|+ ..+++.-+-+++-| ..-.+.|++..+.
T Consensus        88 v~vp~A~-----~~~I~~~~~~~l~-~~~v~~~AN~~~~~-~~~~~~L~~~Gi~  134 (200)
T cd01075          88 VFAPCAL-----GGVINDDTIPQLK-AKAIAGAANNQLAD-PRHGQMLHERGIL  134 (200)
T ss_pred             EEEeccc-----ccccCHHHHHHcC-CCEEEECCcCccCC-HhHHHHHHHCCCE
Confidence            9987765     3689999999998 45888888888766 4456666665554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain

Probab=98.63  E-value=1.3e-07  Score=74.09  Aligned_cols=92  Identities=26%  Similarity=0.361  Sum_probs=60.8

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCC---cEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFK---MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg---~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +|||||+|+||+.+++.| ..-|   .+|. +++++++.. ..+...+       +   ... ...+..+++++||+|++
T Consensus         1 kI~iIG~G~mg~al~~~l-~~~g~~~~~v~~~~~r~~~~~-~~~~~~~-------~---~~~-~~~~~~~~~~~advvil   67 (96)
T PF03807_consen    1 KIGIIGAGNMGSALARGL-LASGIKPHEVIIVSSRSPEKA-AELAKEY-------G---VQA-TADDNEEAAQEADVVIL   67 (96)
T ss_dssp             EEEEESTSHHHHHHHHHH-HHTTS-GGEEEEEEESSHHHH-HHHHHHC-------T---TEE-ESEEHHHHHHHTSEEEE
T ss_pred             CEEEECCCHHHHHHHHHH-HHCCCCceeEEeeccCcHHHH-HHHHHhh-------c---ccc-ccCChHHhhccCCEEEE
Confidence            699999999999999998 4778   8999 458887643 2222221       1   111 12378999999999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      |+|  |+...-+-.+. ....++.++|++.=|
T Consensus        68 av~--p~~~~~v~~~i-~~~~~~~~vis~~ag   96 (96)
T PF03807_consen   68 AVK--PQQLPEVLSEI-PHLLKGKLVISIAAG   96 (96)
T ss_dssp             -S---GGGHHHHHHHH-HHHHTTSEEEEESTT
T ss_pred             EEC--HHHHHHHHHHH-hhccCCCEEEEeCCC
Confidence            998  33332233333 556678999987643

It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....

>PLN02712 arogenate dehydrogenase

Probab=98.63  E-value=8.8e-08  Score=100.00  Aligned_cols=95  Identities=15%  Similarity=0.184  Sum_probs=70.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV~l  242 (342)
                      ..++|||||+|.||+.+|+.| +.+|.+|.+||++......   ..            .+.....++++++ .++|+|++
T Consensus        51 ~~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~A---~~------------~Gv~~~~d~~e~~~~~aDvViL  114 (667)
T PLN02712         51 TQLKIAIIGFGNYGQFLAKTL-ISQGHTVLAHSRSDHSLAA---RS------------LGVSFFLDPHDLCERHPDVILL  114 (667)
T ss_pred             CCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH---HH------------cCCEEeCCHHHHhhcCCCEEEE
Confidence            346899999999999999998 6789999999987432111   00            1112245778865 56999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      |+|. ..+..++....+..+++|++++|++.-.
T Consensus       115 avP~-~~~~~vl~~l~~~~l~~g~iVvDv~SvK  146 (667)
T PLN02712        115 CTSI-ISTENVLKSLPLQRLKRNTLFVDVLSVK  146 (667)
T ss_pred             cCCH-HHHHHHHHhhhhhcCCCCeEEEECCCCc
Confidence            9995 5677888775556799999999997544

>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates

Probab=98.61  E-value=9.3e-08  Score=81.73  Aligned_cols=91  Identities=30%  Similarity=0.306  Sum_probs=60.6

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      |.||+|+|||||.-|++.|..| +.-|.+|.+-.+..+...++..        .+     ++ ...+++|+.++||+|.+
T Consensus         2 l~~k~IAViGyGsQG~a~AlNL-rDSG~~V~Vglr~~s~s~~~A~--------~~-----Gf-~v~~~~eAv~~aDvV~~   66 (165)
T PF07991_consen    2 LKGKTIAVIGYGSQGHAHALNL-RDSGVNVIVGLREGSASWEKAK--------AD-----GF-EVMSVAEAVKKADVVML   66 (165)
T ss_dssp             HCTSEEEEES-SHHHHHHHHHH-HHCC-EEEEEE-TTCHHHHHHH--------HT-----T--ECCEHHHHHHC-SEEEE
T ss_pred             cCCCEEEEECCChHHHHHHHHH-HhCCCCEEEEecCCCcCHHHHH--------HC-----CC-eeccHHHHHhhCCEEEE
Confidence            5799999999999999999998 8899999987666552222211        11     12 34689999999999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEE
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILV  269 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lI  269 (342)
                      .+|. +....+..++....||+|+.|+
T Consensus        67 L~PD-~~q~~vy~~~I~p~l~~G~~L~   92 (165)
T PF07991_consen   67 LLPD-EVQPEVYEEEIAPNLKPGATLV   92 (165)
T ss_dssp             -S-H-HHHHHHHHHHHHHHS-TT-EEE
T ss_pred             eCCh-HHHHHHHHHHHHhhCCCCCEEE
Confidence            9994 2234455677777999998765

This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.

>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.60  E-value=1.8e-06  Score=81.00  Aligned_cols=170  Identities=16%  Similarity=0.211  Sum_probs=107.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+..     +.++|+++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIivq~Plp~~i~~~~i~~~I~p~--K-------DVDGl~~  124 (286)
T PRK14175         55 KAAEKIGMISEIVHLEE-TATEEEVLNELNRLNNDDSVSGILVQVPLPKQVSEQKILEAINPE--K-------DVDGFHP  124 (286)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCc
Confidence            44556788887665543 3467777766531     4679998864  234443 33333221  1       1222210


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      .   ..|-...+.++ ....++.-++.++-.                         .+..+.||++.|||.|. +|+.+|
T Consensus       125 ~---n~g~l~~~~~~-~~PcTp~ai~~ll~~-------------------------~~i~l~Gk~vvVIGrs~~VG~pla  175 (286)
T PRK14175        125 I---NIGKLYIDEQT-FVPCTPLGIMEILKH-------------------------ADIDLEGKNAVVIGRSHIVGQPVS  175 (286)
T ss_pred             c---chHhHhcCCCC-CCCCcHHHHHHHHHH-------------------------cCCCCCCCEEEEECCCchhHHHHH
Confidence            0   01111112222 344455554433321                         13478999999999999 999999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      ..| ...|++|+.++++.                            .++.+.+++||+|+.+++.    .++|..+.   
T Consensus       176 ~lL-~~~gatVtv~~s~t----------------------------~~l~~~~~~ADIVIsAvg~----p~~i~~~~---  219 (286)
T PRK14175        176 KLL-LQKNASVTILHSRS----------------------------KDMASYLKDADVIVSAVGK----PGLVTKDV---  219 (286)
T ss_pred             HHH-HHCCCeEEEEeCCc----------------------------hhHHHHHhhCCEEEECCCC----CcccCHHH---
Confidence            998 68899999886532                            3678899999999999985    45788864   


Q ss_pred             CCCCcEEEEcCCCc
Q 019387          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~ga~lINvaRG~  275 (342)
                      +|+|+++||+|--.
T Consensus       220 vk~gavVIDvGi~~  233 (286)
T PRK14175        220 VKEGAVIIDVGNTP  233 (286)
T ss_pred             cCCCcEEEEcCCCc
Confidence            68999999998543

>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.58  E-value=2e-07  Score=87.78  Aligned_cols=170  Identities=19%  Similarity=0.192  Sum_probs=106.7

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+.     ++.|+++++.+  ..+++. +++.+.-.  |       -+|.+--
T Consensus        56 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~  125 (301)
T PRK14194         56 LRAEEAGIRSLEHRLPA-DTSQARLLALIAELNADPSVNGILLQLPLPAHIDEARVLQAINPL--K-------DVDGFHS  125 (301)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCeEEEeCCCCCCCCHHHHHhccCch--h-------ccCccCh
Confidence            34456777777655543 357788877663     24689998864  344443 33332211  1       2222210


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC-HHHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G-~IG~~vA  181 (342)
                      .   ..|-...+.+ .....++.-++.++    +.                     .+.++.||+|+|||.| .||+++|
T Consensus       126 ~---N~g~l~~~~~-~~~PcTp~aii~lL----~~---------------------~~i~l~Gk~V~vIG~s~ivG~PmA  176 (301)
T PRK14194        126 E---NVGGLSQGRD-VLTPCTPSGCLRLL----ED---------------------TCGDLTGKHAVVIGRSNIVGKPMA  176 (301)
T ss_pred             h---hhhHHhcCCC-CCCCCcHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCccHHHHH
Confidence            0   0111111112 23444555544332    11                     1357999999999996 9999999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..-|++|.+|+++.                            .++.++.++||+|+++++..    +++....   
T Consensus       177 ~~L-~~~gatVtv~~~~t----------------------------~~l~e~~~~ADIVIsavg~~----~~v~~~~---  220 (301)
T PRK14194        177 ALL-LQAHCSVTVVHSRS----------------------------TDAKALCRQADIVVAAVGRP----RLIDADW---  220 (301)
T ss_pred             HHH-HHCCCEEEEECCCC----------------------------CCHHHHHhcCCEEEEecCCh----hcccHhh---
Confidence            998 56799999997542                            36888999999999999853    4666654   


Q ss_pred             CCCCcEEEEcCCCc
Q 019387          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~ga~lINvaRG~  275 (342)
                      +|+|+++||+|--.
T Consensus       221 ik~GaiVIDvgin~  234 (301)
T PRK14194        221 LKPGAVVIDVGINR  234 (301)
T ss_pred             ccCCcEEEEecccc
Confidence            88999999998544

>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.57  E-value=4.6e-07  Score=85.45  Aligned_cols=128  Identities=16%  Similarity=0.193  Sum_probs=84.0

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh---ccCCCC--------ccccccCCHHHHh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANGEQP--------VTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~~~~--------~~~~~~~~l~~ll  234 (342)
                      ++|+|||.|.||..+|..|+ ..|.+|++||++++.. +...........   ..+...        .......++++.+
T Consensus         2 ~~V~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~   79 (288)
T PRK09260          2 EKLVVVGAGVMGRGIAYVFA-VSGFQTTLVDIKQEQL-ESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAV   79 (288)
T ss_pred             cEEEEECccHHHHHHHHHHH-hCCCcEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhh
Confidence            57999999999999999984 6699999999987642 221111000000   000000        0112346788899


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEEecC
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~l-INvaRG~~vd~~aL~~aL~~g~i~~aaLDV~  299 (342)
                      ++||+|+.|+|...+.+..+-.+..+.+++++++ +|++.   +....+.+.++ ..-+..++..|
T Consensus        80 ~~aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt---~~~~~l~~~~~-~~~r~~g~h~~  141 (288)
T PRK09260         80 ADADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTST---MSPTEIASFTK-RPERVIAMHFF  141 (288)
T ss_pred             cCCCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCC---CCHHHHHhhcC-CcccEEEEecC
Confidence            9999999999987666655555566778999877 78876   44456666653 33445677766

>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=98.54  E-value=4.2e-07  Score=79.03  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=68.5

Q ss_pred             cccCCCeEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~I-G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      ..+.|+++.|||.|.+ |..+|+.| ...|++|++.+++.                            .++.+.+.++|+
T Consensus        40 ~~l~gk~vlViG~G~~~G~~~a~~L-~~~g~~V~v~~r~~----------------------------~~l~~~l~~aDi   90 (168)
T cd01080          40 IDLAGKKVVVVGRSNIVGKPLAALL-LNRNATVTVCHSKT----------------------------KNLKEHTKQADI   90 (168)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHH-hhCCCEEEEEECCc----------------------------hhHHHHHhhCCE
Confidence            3689999999999996 88899997 68899998888652                            357788999999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd  278 (342)
                      |+.+.+..    ++|+.+.   ++++.++||++....+|
T Consensus        91 VIsat~~~----~ii~~~~---~~~~~viIDla~prdvd  122 (168)
T cd01080          91 VIVAVGKP----GLVKGDM---VKPGAVVIDVGINRVPD  122 (168)
T ss_pred             EEEcCCCC----ceecHHH---ccCCeEEEEccCCCccc
Confidence            99998742    3788875   57899999999888777

NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.50  E-value=8.8e-06  Score=82.28  Aligned_cols=228  Identities=18%  Similarity=0.173  Sum_probs=124.8

Q ss_pred             HHHHHhCCCeEEEecCC--CCCCCHHHHHHH---h-----CCCceEEEecCCCCccHHHHHHhhccCCceEEEccccCCc
Q 019387           30 INLLIEQDCRVEICTQK--KTILSVEDIIAL---I-----GDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNN   99 (342)
Q Consensus        30 ~~~l~~~~~~v~~~~~~--~~~~~~~e~~~~---~-----~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~   99 (342)
                      .+.|.+.|++|.+....  ....+.++..+.   +     -+++|+|+.- . +.+.+.++.++. |-.+++......|.
T Consensus        23 v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~~v~~~diilkV-~-~P~~~e~~~l~~-g~~li~~l~p~~~~   99 (509)
T PRK09424         23 VEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGAAVWQSDIILKV-N-APSDDEIALLRE-GATLVSFIWPAQNP   99 (509)
T ss_pred             HHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCcccccCCEEEEe-C-CCCHHHHHhcCC-CCEEEEEeCcccCH
Confidence            67888889999876542  223455555431   0     0247877732 1 223455677765 32444544444444


Q ss_pred             cChhHHHhCCeeEecCCCCC----------chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEE
Q 019387          100 VDVNAANKYGIAVGNTPGVL----------TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (342)
Q Consensus       100 id~~~~~~~gI~V~n~~~~~----------~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvg  169 (342)
                      =-++.+.++||.+......-          =.++|+.+=      +|-...+.+..  +.+..  ..........|.+|.
T Consensus       100 ~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAG------y~Av~~aa~~~--~~~~~--g~~taaG~~pg~kVl  169 (509)
T PRK09424        100 ELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAG------YRAVIEAAHEF--GRFFT--GQITAAGKVPPAKVL  169 (509)
T ss_pred             HHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhH------HHHHHHHHHHh--cccCC--CceeccCCcCCCEEE
Confidence            44677889999887622211          112222221      22222221111  11100  000001135699999


Q ss_pred             EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh---hhcc--CCCCcccccc--CC--------HHHHh
Q 019387          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKAN--GEQPVTWKRA--SS--------MDEVL  234 (342)
Q Consensus       170 IvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~~~--~~--------l~~ll  234 (342)
                      |+|.|.+|...++. ++.+|++|+++|.+++.....  +.++..   ....  +....++...  .+        +.+.+
T Consensus       170 ViGaG~iGL~Ai~~-Ak~lGA~V~a~D~~~~rle~a--eslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~  246 (509)
T PRK09424        170 VIGAGVAGLAAIGA-AGSLGAIVRAFDTRPEVAEQV--ESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQA  246 (509)
T ss_pred             EECCcHHHHHHHHH-HHHCCCEEEEEeCCHHHHHHH--HHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhcc
Confidence            99999999999998 489999999999988643221  122211   0000  0000000000  01        12223


Q ss_pred             hcCCEEEEcCCCCc-ccccccCHHHHhcCCCCcEEEEcCC
Q 019387          235 READVISLHPVLDK-TTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       235 ~~aDiV~l~~pl~~-~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .++|+|+.|..... ....++.++.++.||+|..+|+++=
T Consensus       247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~  286 (509)
T PRK09424        247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAA  286 (509)
T ss_pred             CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence            57999999875422 1345778999999999999999973

>PRK08818 prephenate dehydrogenase; Provisional

Probab=98.49  E-value=3.5e-07  Score=88.99  Aligned_cols=86  Identities=19%  Similarity=0.268  Sum_probs=65.9

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .-.+|+|||+ |.||+++|+.|.+.+|.+|++||+..+                         ...++++.+++||+|++
T Consensus         3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~-------------------------~~~~~~~~v~~aDlVil   57 (370)
T PRK08818          3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP-------------------------GSLDPATLLQRADVLIF   57 (370)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc-------------------------ccCCHHHHhcCCCEEEE
Confidence            4569999999 999999999984346999999997421                         12467888999999999


Q ss_pred             cCCCCcccccccCHH--HHhcCCCCcEEEEcCCCc
Q 019387          243 HPVLDKTTYHLINKE--RLATMKKEAILVNCSRGP  275 (342)
Q Consensus       243 ~~pl~~~t~~li~~~--~l~~mk~ga~lINvaRG~  275 (342)
                      |+|. ..+..++.+-  ....+++|+++++++.=.
T Consensus        58 avPv-~~~~~~l~~l~~~~~~l~~~~iVtDVgSvK   91 (370)
T PRK08818         58 SAPI-RHTAALIEEYVALAGGRAAGQLWLDVTSIK   91 (370)
T ss_pred             eCCH-HHHHHHHHHHhhhhcCCCCCeEEEECCCCc
Confidence            9995 4555555432  223489999999998754

>PRK13302 putative L-aspartate dehydrogenase; Provisional

Probab=98.48  E-value=7.4e-07  Score=83.43  Aligned_cols=111  Identities=17%  Similarity=0.175  Sum_probs=78.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~a-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ..+|||||+|+||+.+++.|.+. .++++. ++|+.++.. +.+.+.+       +.    ...+.++++++.++|+|++
T Consensus         6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a-~~~a~~~-------g~----~~~~~~~eell~~~D~Vvi   73 (271)
T PRK13302          6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRH-ADFIWGL-------RR----PPPVVPLDQLATHADIVVE   73 (271)
T ss_pred             eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHH-HHHHHhc-------CC----CcccCCHHHHhcCCCEEEE
Confidence            46899999999999999987543 588877 678876432 2221111       10    1134689999999999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      |+|..  ++.-+   ....++.|..++..+.|.+.+.++|.++.+++...
T Consensus        74 ~tp~~--~h~e~---~~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~g~~  118 (271)
T PRK13302         74 AAPAS--VLRAI---VEPVLAAGKKAIVLSVGALLRNEDLIDLARQNGGQ  118 (271)
T ss_pred             CCCcH--HHHHH---HHHHHHcCCcEEEecchhHHhHHHHHHHHHHcCCE
Confidence            99953  22222   23445677777778899888899999998876544

>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.47  E-value=1.6e-06  Score=81.94  Aligned_cols=138  Identities=20%  Similarity=0.255  Sum_probs=85.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh----hhhhhhccCCCC--------ccccccCCHHHH
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANGEQP--------VTWKRASSMDEV  233 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~--------~~~~~~~~l~~l  233 (342)
                      ++|+|||.|.||..+|..|+ ..|.+|++||++++... .....    ..... ..+..+        ......+++++ 
T Consensus         5 ~kI~vIGaG~mG~~iA~~la-~~G~~V~l~d~~~~~~~-~~~~~i~~~~~~~~-~~g~~~~~~~~~~~~~i~~~~~~~~-   80 (292)
T PRK07530          5 KKVGVIGAGQMGNGIAHVCA-LAGYDVLLNDVSADRLE-AGLATINGNLARQV-AKGKISEEARAAALARISTATDLED-   80 (292)
T ss_pred             CEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHH-HcCCCCHHHHHHHHhCeEeeCCHHH-
Confidence            58999999999999999985 56899999999875432 11110    00000 011100        01122356654 


Q ss_pred             hhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCccccc
Q 019387          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFK  310 (342)
Q Consensus       234 l~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lI-NvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tP  310 (342)
                      +++||+|+.|+|...+.+..+-++....++++++|+ |++.-   +..++.+.+.. .-+..++-.+.+-|  +.+.+.+
T Consensus        81 ~~~aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~---~~s~la~~~~~-~~r~~g~h~~~p~~~~~~vei~~  156 (292)
T PRK07530         81 LADCDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSI---SITRLASATDR-PERFIGIHFMNPVPVMKLVELIR  156 (292)
T ss_pred             hcCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCC---CHHHHHhhcCC-cccEEEeeccCCcccCceEEEeC
Confidence            789999999999876665555456677889999998 56553   33467776632 23345556555333  3344444


Q ss_pred             c
Q 019387          311 H  311 (342)
Q Consensus       311 h  311 (342)
                      +
T Consensus       157 g  157 (292)
T PRK07530        157 G  157 (292)
T ss_pred             C
Confidence            4

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=98.47  E-value=7.4e-07  Score=74.67  Aligned_cols=105  Identities=23%  Similarity=0.294  Sum_probs=74.8

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|+++.|+|.|.+|+.++..| ...|++ |++++|+.++ .+...+.+       +..........++.+.+.++|+|
T Consensus         9 ~l~~~~vlviGaGg~ar~v~~~L-~~~g~~~i~i~nRt~~r-a~~l~~~~-------~~~~~~~~~~~~~~~~~~~~Div   79 (135)
T PF01488_consen    9 DLKGKRVLVIGAGGAARAVAAAL-AALGAKEITIVNRTPER-AEALAEEF-------GGVNIEAIPLEDLEEALQEADIV   79 (135)
T ss_dssp             TGTTSEEEEESSSHHHHHHHHHH-HHTTSSEEEEEESSHHH-HHHHHHHH-------TGCSEEEEEGGGHCHHHHTESEE
T ss_pred             CcCCCEEEEECCHHHHHHHHHHH-HHcCCCEEEEEECCHHH-HHHHHHHc-------CccccceeeHHHHHHHHhhCCeE
Confidence            68999999999999999999998 578986 9999998753 33332222       11122233456778889999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCc-EEEEcCCCcccC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGPVID  278 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga-~lINvaRG~~vd  278 (342)
                      +.+.|...   ..+.++.++..++.. ++++.+...-|+
T Consensus        80 I~aT~~~~---~~i~~~~~~~~~~~~~~v~Dla~Pr~i~  115 (135)
T PF01488_consen   80 INATPSGM---PIITEEMLKKASKKLRLVIDLAVPRDID  115 (135)
T ss_dssp             EE-SSTTS---TSSTHHHHTTTCHHCSEEEES-SS-SB-
T ss_pred             EEecCCCC---cccCHHHHHHHHhhhhceeccccCCCCC
Confidence            99998643   388899888877654 899997665444

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

>PRK07679 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.47  E-value=1.3e-06  Score=82.06  Aligned_cols=106  Identities=18%  Similarity=0.260  Sum_probs=73.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      +.+|||||+|+||.++|+.|. .-|    .+|++++++.+.+.+.+...+       +     .....+..+++.+||+|
T Consensus         3 ~mkI~~IG~G~mG~aia~~l~-~~g~~~~~~v~v~~r~~~~~~~~l~~~~-------g-----~~~~~~~~e~~~~aDvV   69 (279)
T PRK07679          3 IQNISFLGAGSIAEAIIGGLL-HANVVKGEQITVSNRSNETRLQELHQKY-------G-----VKGTHNKKELLTDANIL   69 (279)
T ss_pred             CCEEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCCHHHHHHHHHhc-------C-----ceEeCCHHHHHhcCCEE
Confidence            458999999999999999875 444    678999987654444332221       1     12235778888999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      ++|+|. .+....+ .+....++++.++|++.-|  +..+.|.+.+.
T Consensus        70 ilav~p-~~~~~vl-~~l~~~~~~~~liIs~~aG--i~~~~l~~~~~  112 (279)
T PRK07679         70 FLAMKP-KDVAEAL-IPFKEYIHNNQLIISLLAG--VSTHSIRNLLQ  112 (279)
T ss_pred             EEEeCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            999983 4444444 3444557789999998644  46666776553

>PLN02688 pyrroline-5-carboxylate reductase

Probab=98.46  E-value=9.6e-07  Score=82.07  Aligned_cols=102  Identities=31%  Similarity=0.397  Sum_probs=71.9

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCc----EEEEE-cCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKM----NLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~----~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +|||||+|+||.++|+.|. .-|.    +|++| |++++.. +.+.        ..+     .....+..+++.+||+|+
T Consensus         2 kI~~IG~G~mG~a~a~~L~-~~g~~~~~~i~v~~~r~~~~~-~~~~--------~~g-----~~~~~~~~e~~~~aDvVi   66 (266)
T PLN02688          2 RVGFIGAGKMAEAIARGLV-ASGVVPPSRISTADDSNPARR-DVFQ--------SLG-----VKTAASNTEVVKSSDVII   66 (266)
T ss_pred             eEEEECCcHHHHHHHHHHH-HCCCCCcceEEEEeCCCHHHH-HHHH--------HcC-----CEEeCChHHHHhcCCEEE
Confidence            6999999999999999984 4465    88888 8776432 2211        111     223457788889999999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      +|+| .+..+.++. +....++++.++|++.-|  +..+.+.+.+.
T Consensus        67 l~v~-~~~~~~vl~-~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~  108 (266)
T PLN02688         67 LAVK-PQVVKDVLT-ELRPLLSKDKLLVSVAAG--ITLADLQEWAG  108 (266)
T ss_pred             EEEC-cHHHHHHHH-HHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence            9997 455666663 444567889999988655  46677776553

>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase

Probab=98.46  E-value=3.5e-06  Score=71.56  Aligned_cols=115  Identities=17%  Similarity=0.231  Sum_probs=77.2

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.+++++|+|.|.||+.+++.| ...| .+|.++|++++.. +.+.+.+.       .... .....+.+++++++|+|
T Consensus        16 ~~~~~~i~iiG~G~~g~~~a~~l-~~~g~~~v~v~~r~~~~~-~~~~~~~~-------~~~~-~~~~~~~~~~~~~~Dvv   85 (155)
T cd01065          16 ELKGKKVLILGAGGAARAVAYAL-AELGAAKIVIVNRTLEKA-KALAERFG-------ELGI-AIAYLDLEELLAEADLI   85 (155)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEcCCHHHH-HHHHHHHh-------hccc-ceeecchhhccccCCEE
Confidence            35688999999999999999998 4564 7899999986543 22222111       0000 01234677778999999


Q ss_pred             EEcCCCCcc-c-ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 019387          241 SLHPVLDKT-T-YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       241 ~l~~pl~~~-t-~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i  291 (342)
                      ++|+|.... . ...+...   .+++|.+++|++--+...  .|.+++++..+
T Consensus        86 i~~~~~~~~~~~~~~~~~~---~~~~~~~v~D~~~~~~~~--~l~~~~~~~g~  133 (155)
T cd01065          86 INTTPVGMKPGDELPLPPS---LLKPGGVVYDVVYNPLET--PLLKEARALGA  133 (155)
T ss_pred             EeCcCCCCCCCCCCCCCHH---HcCCCCEEEEcCcCCCCC--HHHHHHHHCCC
Confidence            999997654 1 2233332   368999999998765443  77777776543

Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann

>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=98.45  E-value=2.1e-06  Score=82.47  Aligned_cols=116  Identities=20%  Similarity=0.215  Sum_probs=75.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCC-CCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      ..+|+|||.|+||..+|..|+ ..|.+|.+|+++++.. +.....-.....-.+. .+.......+++++++.+|+|+++
T Consensus         4 ~m~I~iIG~G~mG~~ia~~L~-~~G~~V~~~~r~~~~~-~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~   81 (328)
T PRK14618          4 GMRVAVLGAGAWGTALAVLAA-SKGVPVRLWARRPEFA-AALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVA   81 (328)
T ss_pred             CCeEEEECcCHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEE
Confidence            348999999999999999984 6689999999976532 2211100000000010 011122346888888999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCC-cccC--HHHHHHHHHc
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG-PVID--EVALVEHLKQ  288 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG-~~vd--~~aL~~aL~~  288 (342)
                      +|.. .+     ++.++.++++.++|+++.| ..-+  .+.+.+.+.+
T Consensus        82 v~~~-~~-----~~v~~~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~  123 (328)
T PRK14618         82 VPSK-AL-----RETLAGLPRALGYVSCAKGLAPDGGRLSELARVLEF  123 (328)
T ss_pred             CchH-HH-----HHHHHhcCcCCEEEEEeeccccCCCccchHHHHHHH
Confidence            9964 22     6667889999999999998 3222  4456666644

>PRK07417 arogenate dehydrogenase; Reviewed

Probab=98.43  E-value=6.4e-07  Score=84.10  Aligned_cols=93  Identities=14%  Similarity=0.258  Sum_probs=64.3

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|||||+|.||+.+|+.| +..|.+|.+||++++..... .        ..+...   ....+. +.+++||+|++|+|.
T Consensus         2 ~I~IIG~G~mG~sla~~L-~~~g~~V~~~d~~~~~~~~a-~--------~~g~~~---~~~~~~-~~~~~aDlVilavp~   67 (279)
T PRK07417          2 KIGIVGLGLIGGSLGLDL-RSLGHTVYGVSRRESTCERA-I--------ERGLVD---EASTDL-SLLKDCDLVILALPI   67 (279)
T ss_pred             eEEEEeecHHHHHHHHHH-HHCCCEEEEEECCHHHHHHH-H--------HCCCcc---cccCCH-hHhcCCCEEEEcCCH
Confidence            799999999999999998 56799999999986542111 1        111111   011233 467899999999995


Q ss_pred             CcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          247 DKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       247 ~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      . ....++ ++....+++++++++++.-.
T Consensus        68 ~-~~~~~~-~~l~~~l~~~~ii~d~~Svk   94 (279)
T PRK07417         68 G-LLLPPS-EQLIPALPPEAIVTDVGSVK   94 (279)
T ss_pred             H-HHHHHH-HHHHHhCCCCcEEEeCcchH
Confidence            3 333333 45567788999999988644

>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.43  E-value=6.4e-06  Score=77.15  Aligned_cols=77  Identities=16%  Similarity=0.157  Sum_probs=64.4

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .++.||++.|||.|. +|+++|.+| ...|+.|+.+..+                            ..++++.+++||+
T Consensus       155 i~l~Gk~vvViGrs~iVG~Pla~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADI  205 (285)
T PRK10792        155 IDTYGLNAVVVGASNIVGRPMSLEL-LLAGCTVTVCHRF----------------------------TKNLRHHVRNADL  205 (285)
T ss_pred             CCCCCCEEEEECCCcccHHHHHHHH-HHCCCeEEEEECC----------------------------CCCHHHHHhhCCE
Confidence            578999999999999 999999998 6789999987643                            1478899999999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+.+++.    .+++..   +++|+|+++||+|-
T Consensus       206 vi~avG~----p~~v~~---~~vk~gavVIDvGi  232 (285)
T PRK10792        206 LVVAVGK----PGFIPG---EWIKPGAIVIDVGI  232 (285)
T ss_pred             EEEcCCC----cccccH---HHcCCCcEEEEccc
Confidence            9999953    246776   55789999999983

>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.43  E-value=1.3e-06  Score=82.47  Aligned_cols=144  Identities=16%  Similarity=0.207  Sum_probs=93.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCCC--------ccccccCCHHHHh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~~l~~ll  234 (342)
                      ++|||||.|.||..+|..++ ..|.+|+.||+.++......   ...++.+... +...        ......++++ .+
T Consensus         6 ~~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~-g~~~~~~~~~~~~~l~~~~~~~-~~   82 (286)
T PRK07819          6 QRVGVVGAGQMGAGIAEVCA-RAGVDVLVFETTEELATAGRNRIEKSLERAVSR-GKLTERERDAALARLRFTTDLG-DF   82 (286)
T ss_pred             cEEEEEcccHHHHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhc-ccCChhhHHHHHhCeEeeCCHH-Hh
Confidence            48999999999999999985 56999999999987532211   1111111111 1110        0111346774 57


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcC-CCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          235 READVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~m-k~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      ++||+|+-|+|-+.+.+.-+-...=+.+ +++++|++.+.+-  ...++..++.. .-+..++..|.+-|  +.+-+.|+
T Consensus        83 ~~~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~--~~~~la~~~~~-~~r~~g~hf~~P~~~~~lvElv~~  159 (286)
T PRK07819         83 ADRQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSI--PIMKLAAATKR-PGRVLGLHFFNPVPVLPLVELVPT  159 (286)
T ss_pred             CCCCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCC-CccEEEEecCCCcccCceEEEeCC
Confidence            9999999999999888877766544545 8999999877654  44555555542 33456777777655  56666666


Q ss_pred             cccc
Q 019387          312 ISTQ  315 (342)
Q Consensus       312 ia~~  315 (342)
                      -.+.
T Consensus       160 ~~T~  163 (286)
T PRK07819        160 LVTS  163 (286)
T ss_pred             CCCC
Confidence            4443

>PRK07502 cyclohexadienyl dehydrogenase; Validated

Probab=98.43  E-value=8.9e-07  Score=84.24  Aligned_cols=96  Identities=23%  Similarity=0.238  Sum_probs=66.4

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .++|+|||+|.||..+|+.| +..|  .+|++||++++.. +...        ..+..   .....++++.+++||+|++
T Consensus         6 ~~~I~IIG~G~mG~sla~~l-~~~g~~~~V~~~dr~~~~~-~~a~--------~~g~~---~~~~~~~~~~~~~aDvVii   72 (307)
T PRK07502          6 FDRVALIGIGLIGSSLARAI-RRLGLAGEIVGADRSAETR-ARAR--------ELGLG---DRVTTSAAEAVKGADLVIL   72 (307)
T ss_pred             CcEEEEEeeCHHHHHHHHHH-HhcCCCcEEEEEECCHHHH-HHHH--------hCCCC---ceecCCHHHHhcCCCEEEE
Confidence            46899999999999999997 4556  4899999987542 1111        11111   1123567888899999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      |+|.. .+..++ ++....+++|.++++++...
T Consensus        73 avp~~-~~~~v~-~~l~~~l~~~~iv~dvgs~k  103 (307)
T PRK07502         73 CVPVG-ASGAVA-AEIAPHLKPGAIVTDVGSVK  103 (307)
T ss_pred             CCCHH-HHHHHH-HHHHhhCCCCCEEEeCccch
Confidence            99953 233333 34556789999999997644

>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.41  E-value=2.2e-05  Score=73.65  Aligned_cols=168  Identities=16%  Similarity=0.218  Sum_probs=106.3

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+..     +.|+|+++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        61 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~LN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~  130 (287)
T PRK14176         61 KACERVGIRAEDQFLPA-DTTQEELLELIDSLNKRKDVHGILLQLPLPKHLDPQEAMEAIDPA--K-------DADGFHP  130 (287)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------cccccCh
Confidence            44556788887766543 3567777765532     4689999864  234433 33332211  1       1222210


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                         ...|-...+.+ .....+++-++.++=    +                     .+.++.||++.|||.|+ +|+++|
T Consensus       131 ---~N~g~l~~g~~-~~~PcTp~av~~ll~----~---------------------~~i~l~Gk~vvViGrs~iVGkPla  181 (287)
T PRK14176        131 ---YNMGKLMIGDE-GLVPCTPHGVIRALE----E---------------------YGVDIEGKNAVIVGHSNVVGKPMA  181 (287)
T ss_pred             ---hhhhhHhcCCC-CCCCCcHHHHHHHHH----H---------------------cCCCCCCCEEEEECCCcccHHHHH
Confidence               01111122222 234555655553331    1                     13578999999999999 999999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      ..| ...|+.|..++.+                            ..++.+..++||+|+.++.-    .++|..+   +
T Consensus       182 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvv~AvG~----p~~i~~~---~  225 (287)
T PRK14176        182 AML-LNRNATVSVCHVF----------------------------TDDLKKYTLDADILVVATGV----KHLIKAD---M  225 (287)
T ss_pred             HHH-HHCCCEEEEEecc----------------------------CCCHHHHHhhCCEEEEccCC----ccccCHH---H
Confidence            998 6789999987632                            14788899999999998753    3577766   6


Q ss_pred             CCCCcEEEEcCC
Q 019387          262 MKKEAILVNCSR  273 (342)
Q Consensus       262 mk~ga~lINvaR  273 (342)
                      +|+|+++||+|-
T Consensus       226 vk~gavVIDvGi  237 (287)
T PRK14176        226 VKEGAVIFDVGI  237 (287)
T ss_pred             cCCCcEEEEecc
Confidence            789999999985

>PRK06545 prephenate dehydrogenase; Validated

Probab=98.39  E-value=9.1e-07  Score=86.12  Aligned_cols=98  Identities=19%  Similarity=0.181  Sum_probs=66.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++|+|||+|.||+++|+.| +..|.+|.+|++.+.......  ..     ..+..   .....++++++++||+|++|+|
T Consensus         1 ~~I~iIG~GliG~siA~~L-~~~G~~v~i~~~~~~~~~~~~--a~-----~~~~~---~~~~~~~~~~~~~aDlVilavP   69 (359)
T PRK06545          1 RTVLIVGLGLIGGSLALAI-KAAGPDVFIIGYDPSAAQLAR--AL-----GFGVI---DELAADLQRAAAEADLIVLAVP   69 (359)
T ss_pred             CeEEEEEeCHHHHHHHHHH-HhcCCCeEEEEeCCCHHHHHH--Hh-----cCCCC---cccccCHHHHhcCCCEEEEeCC
Confidence            4799999999999999998 677887777776654321110  00     00110   1123577888999999999999


Q ss_pred             CCcccccccCHHHHh-cCCCCcEEEEcCCCcc
Q 019387          246 LDKTTYHLINKERLA-TMKKEAILVNCSRGPV  276 (342)
Q Consensus       246 l~~~t~~li~~~~l~-~mk~ga~lINvaRG~~  276 (342)
                      . ..+..++.+ ... .+++++++.+++.-..
T Consensus        70 ~-~~~~~vl~~-l~~~~l~~~~ivtDv~SvK~   99 (359)
T PRK06545         70 V-DATAALLAE-LADLELKPGVIVTDVGSVKG   99 (359)
T ss_pred             H-HHHHHHHHH-HhhcCCCCCcEEEeCccccH
Confidence            6 456666643 223 4789999999987653

>PRK08655 prephenate dehydrogenase; Provisional

Probab=98.38  E-value=1.3e-06  Score=87.12  Aligned_cols=105  Identities=18%  Similarity=0.259  Sum_probs=75.1

Q ss_pred             eEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|+|+| +|.||+.+|+.| +..|.+|.+|+++++.. ......       .+     .....+.++.+.+||+|++|+|
T Consensus         2 kI~IIGG~G~mG~slA~~L-~~~G~~V~v~~r~~~~~-~~~a~~-------~g-----v~~~~~~~e~~~~aDvVIlavp   67 (437)
T PRK08655          2 KISIIGGTGGLGKWFARFL-KEKGFEVIVTGRDPKKG-KEVAKE-------LG-----VEYANDNIDAAKDADIVIISVP   67 (437)
T ss_pred             EEEEEecCCHHHHHHHHHH-HHCCCEEEEEECChHHH-HHHHHH-------cC-----CeeccCHHHHhccCCEEEEecC
Confidence            799997 999999999997 67899999999876432 111111       11     1223577888999999999999


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      . ..+..++ ++....+++|+++++++.......+++.+.+.
T Consensus        68 ~-~~~~~vl-~~l~~~l~~~~iViDvsSvK~~~~~~l~~~~~  107 (437)
T PRK08655         68 I-NVTEDVI-KEVAPHVKEGSLLMDVTSVKERPVEAMEEYAP  107 (437)
T ss_pred             H-HHHHHHH-HHHHhhCCCCCEEEEcccccHHHHHHHHHhcC
Confidence            6 3455555 44566789999999999755444555555544

>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional

Probab=98.37  E-value=2e-06  Score=84.23  Aligned_cols=111  Identities=14%  Similarity=0.173  Sum_probs=78.0

Q ss_pred             chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       120 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~  198 (342)
                      .....+..+-.++...|+..      ++..+.        ......++|+||| +|.||+.+|+.| +..|.+|.+||+.
T Consensus        67 ~~~~~~~i~~~i~~~s~~~q------~~~~~~--------~~~~~~~~I~IiGG~GlmG~slA~~l-~~~G~~V~~~d~~  131 (374)
T PRK11199         67 PPDLIEDVLRRVMRESYSSE------NDKGFK--------TLNPDLRPVVIVGGKGQLGRLFAKML-TLSGYQVRILEQD  131 (374)
T ss_pred             CHHHHHHHHHHHHHHHHHHh------HHhccc--------ccCcccceEEEEcCCChhhHHHHHHH-HHCCCeEEEeCCC
Confidence            44445666777777766442      121111        1122458999999 999999999998 6778999999974


Q ss_pred             chhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      ..                           .+.++++++||+|++|+|.. .+..++. + +..+++|+++++++.-.
T Consensus       132 ~~---------------------------~~~~~~~~~aDlVilavP~~-~~~~~~~-~-l~~l~~~~iv~Dv~SvK  178 (374)
T PRK11199        132 DW---------------------------DRAEDILADAGMVIVSVPIH-LTEEVIA-R-LPPLPEDCILVDLTSVK  178 (374)
T ss_pred             cc---------------------------hhHHHHHhcCCEEEEeCcHH-HHHHHHH-H-HhCCCCCcEEEECCCcc
Confidence            21                           25577889999999999965 3455553 3 44489999999997654

>PRK12491 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.33  E-value=2.1e-06  Score=80.45  Aligned_cols=104  Identities=23%  Similarity=0.330  Sum_probs=73.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      ++|||||+|+||+++++.|. .-|    .+|+++|++++. .+.+.+.+       +     .....+..+++.+||+|+
T Consensus         3 ~~IgfIG~G~MG~aia~~L~-~~g~~~~~~I~v~~r~~~~-~~~l~~~~-------g-----~~~~~~~~e~~~~aDiIi   68 (272)
T PRK12491          3 KQIGFIGCGNMGIAMIGGMI-NKNIVSPDQIICSDLNVSN-LKNASDKY-------G-----ITITTNNNEVANSADILI   68 (272)
T ss_pred             CeEEEECccHHHHHHHHHHH-HCCCCCCceEEEECCCHHH-HHHHHHhc-------C-----cEEeCCcHHHHhhCCEEE
Confidence            48999999999999999874 334    379999997654 22221111       1     122357788899999999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      +|+| ......++. +.-..++++.++|++.=|  |+.+.|.+.|.
T Consensus        69 Lavk-P~~~~~vl~-~l~~~~~~~~lvISi~AG--i~i~~l~~~l~  110 (272)
T PRK12491         69 LSIK-PDLYSSVIN-QIKDQIKNDVIVVTIAAG--KSIKSTENEFD  110 (272)
T ss_pred             EEeC-hHHHHHHHH-HHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence            9999 355566553 333456788999999876  56677777664

>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.33  E-value=2e-05  Score=73.81  Aligned_cols=170  Identities=18%  Similarity=0.215  Sum_probs=107.9

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++|+.+.+..     +.|+++++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--K-------DVDGl~~  123 (285)
T PRK14191         54 KACERVGMDSDLHTLQE-NTTEAELLSLIKDLNTDQNIDGILVQLPLPRHIDTKMVLEAIDPN--K-------DVDGFHP  123 (285)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccCh
Confidence            44556788887766544 3467777665532     4688998864  244443 23332211  1       2232211


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC-HHHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G-~IG~~vA  181 (342)
                      .   ..|-...+.+ .....++.-++.++    ++                     .+.++.||+|.|||-| .+|+++|
T Consensus       124 ~---n~g~l~~g~~-~~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvVvGrs~~VG~Pla  174 (285)
T PRK14191        124 L---NIGKLCSQLD-GFVPATPMGVMRLL----KH---------------------YHIEIKGKDVVIIGASNIVGKPLA  174 (285)
T ss_pred             h---hHHHHhcCCC-CCCCCcHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCchhHHHHH
Confidence            0   0111122222 24556666655433    11                     1357899999999999 9999999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|..+..+.                            .++.+.+++||+|+.+++.    .+++..+.+  
T Consensus       175 ~lL-~~~gAtVtv~hs~t----------------------------~~l~~~~~~ADIvV~AvG~----p~~i~~~~v--  219 (285)
T PRK14191        175 MLM-LNAGASVSVCHILT----------------------------KDLSFYTQNADIVCVGVGK----PDLIKASMV--  219 (285)
T ss_pred             HHH-HHCCCEEEEEeCCc----------------------------HHHHHHHHhCCEEEEecCC----CCcCCHHHc--
Confidence            998 57799999874321                            3578889999999999963    568888765  


Q ss_pred             CCCCcEEEEcCCCc
Q 019387          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~ga~lINvaRG~  275 (342)
                       |+|+++||+|--.
T Consensus       220 -k~GavVIDvGi~~  232 (285)
T PRK14191        220 -KKGAVVVDIGINR  232 (285)
T ss_pred             -CCCcEEEEeeccc
Confidence             8999999998644

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=98.32  E-value=2e-06  Score=85.45  Aligned_cols=109  Identities=14%  Similarity=0.109  Sum_probs=75.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-----------cccccCCHHHHh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-----------TWKRASSMDEVL  234 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~ll  234 (342)
                      .+|||||+|.||..+|..|+ . |.+|++||+++.. .+.+..         +..+.           +....++-.+.+
T Consensus         7 mkI~vIGlGyvGlpmA~~la-~-~~~V~g~D~~~~~-ve~l~~---------G~~~~~e~~~~~l~~~g~l~~t~~~~~~   74 (425)
T PRK15182          7 VKIAIIGLGYVGLPLAVEFG-K-SRQVVGFDVNKKR-ILELKN---------GVDVNLETTEEELREARYLKFTSEIEKI   74 (425)
T ss_pred             CeEEEECcCcchHHHHHHHh-c-CCEEEEEeCCHHH-HHHHHC---------cCCCCCCCCHHHHHhhCCeeEEeCHHHH
Confidence            58999999999999999985 3 6999999998754 333221         11100           000122333468


Q ss_pred             hcCCEEEEcCCCCc------ccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387          235 READVISLHPVLDK------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       235 ~~aDiV~l~~pl~~------~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL  286 (342)
                      ++||++++|+|...      +...++.  +...+.+++|.++|+.|.-..-..+.+++.+
T Consensus        75 ~~advvii~Vptp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~  134 (425)
T PRK15182         75 KECNFYIITVPTPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPI  134 (425)
T ss_pred             cCCCEEEEEcCCCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHH
Confidence            89999999999653      3344442  4566789999999999998888887665544

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=98.32  E-value=4.2e-06  Score=83.05  Aligned_cols=109  Identities=23%  Similarity=0.238  Sum_probs=75.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH------------
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV------------  233 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l------------  233 (342)
                      ++|+|||+|.||..+|..|+ ..|.+|++||++++.. +.+..         +..+.   ....++++            
T Consensus         4 ~kI~VIGlG~~G~~~A~~La-~~G~~V~~~D~~~~~v-~~l~~---------g~~~~---~e~~l~~~l~~~~~~g~l~~   69 (415)
T PRK11064          4 ETISVIGLGYIGLPTAAAFA-SRQKQVIGVDINQHAV-DTINR---------GEIHI---VEPDLDMVVKTAVEGGYLRA   69 (415)
T ss_pred             cEEEEECcchhhHHHHHHHH-hCCCEEEEEeCCHHHH-HHHHC---------CCCCc---CCCCHHHHHHHHhhcCceee
Confidence            68999999999999999984 6799999999987542 22111         11111   11233333            


Q ss_pred             ---hhcCCEEEEcCCCCc------cccccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          234 ---LREADVISLHPVLDK------TTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       234 ---l~~aDiV~l~~pl~~------~t~~li--~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                         +++||+|++|+|...      +...+.  -......+++|+++|+.+.-..=..+.+...+.+
T Consensus        70 ~~~~~~aDvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~  135 (415)
T PRK11064         70 TTTPEPADAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE  135 (415)
T ss_pred             ecccccCCEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence               237999999999641      222222  2456677899999999998887777778777765

>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.31  E-value=7.8e-06  Score=77.16  Aligned_cols=131  Identities=17%  Similarity=0.249  Sum_probs=82.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-------hhhhhhccCCCC--------ccccccCCH
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-------YGQFLKANGEQP--------VTWKRASSM  230 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~--------~~~~~~~~l  230 (342)
                      ++|+|||.|.||..+|..++ ..|.+|++||++++.. +...+.       ...+. ..+...        .......++
T Consensus         4 ~~I~ViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l-~~~~~~i~~~~~~l~~~~-~~g~~~~~~~~~~~~~i~~~~~~   80 (291)
T PRK06035          4 KVIGVVGSGVMGQGIAQVFA-RTGYDVTIVDVSEEIL-KNAMELIESGPYGLRNLV-EKGKMSEDEAKAIMARIRTSTSY   80 (291)
T ss_pred             cEEEEECccHHHHHHHHHHH-hcCCeEEEEeCCHHHH-HHHHHHHHhhhhhHHHHH-HcCCCCHHHHHHHHhCcEeeCCH
Confidence            58999999999999999974 6799999999987542 211110       00000 011100        001122345


Q ss_pred             HHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       231 ~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                       +.+++||+|+.|+|...+.+.-+-++.-..++++++|++...|  +....+.+.+.. .-+..++.-|.+-|
T Consensus        81 -~~~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg--~~~~~la~~~~~-~~r~ig~hf~~P~~  149 (291)
T PRK06035         81 -ESLSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSG--IMIAEIATALER-KDRFIGMHWFNPAP  149 (291)
T ss_pred             -HHhCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCC--CCHHHHHhhcCC-cccEEEEecCCCcc
Confidence             4678999999999976554444444455667899999988776  455677777743 33455666555444

>PRK05472 redox-sensing transcriptional repressor Rex; Provisional

Probab=98.31  E-value=5.1e-07  Score=81.50  Aligned_cols=132  Identities=14%  Similarity=0.211  Sum_probs=91.0

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHH-hcCCcEEEE-EcCCch
Q 019387          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIY-YDLYQA  200 (342)
Q Consensus       123 vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~-~afg~~V~~-~d~~~~  200 (342)
                      .++|.+..++...|++.            +|.         ..++++|+|.|.+|+.+++.+. ...|+++.+ +|..+.
T Consensus        63 ~~gy~v~~l~~~~~~~l------------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~  121 (213)
T PRK05472         63 GVGYNVEELLEFIEKIL------------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPE  121 (213)
T ss_pred             CCCeeHHHHHHHHHHHh------------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChh
Confidence            35699999999888774            111         2458999999999999998531 357888885 677653


Q ss_pred             hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEEEEcCCCCcc---cccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLDKT---TYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV~l~~pl~~~---t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      .. ..       .+     .........++++++++  .|.+++|+|.+..   ...+.......-+....+.+|+.||.
T Consensus       122 ~~-~~-------~i-----~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~  188 (213)
T PRK05472        122 KI-GT-------KI-----GGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDV  188 (213)
T ss_pred             hc-CC-------Ee-----CCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCC
Confidence            21 00       00     01112233577888865  9999999997665   22333344445566678999999999


Q ss_pred             ccCHHHHHHHHHc
Q 019387          276 VIDEVALVEHLKQ  288 (342)
Q Consensus       276 ~vd~~aL~~aL~~  288 (342)
                      +|+.++|..+|..
T Consensus       189 ~v~~~~l~~~l~~  201 (213)
T PRK05472        189 IVRNVDLTVELQT  201 (213)
T ss_pred             EEEEechHHHHHH
Confidence            9999999999864

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.30  E-value=7.6e-06  Score=77.13  Aligned_cols=142  Identities=16%  Similarity=0.126  Sum_probs=87.0

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh----hhhhhhccCCC--------CccccccCCHHHH
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANGEQ--------PVTWKRASSMDEV  233 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~~--------~~~~~~~~~l~~l  233 (342)
                      ++|+|||.|.||..+|..++ .-|.+|+.||++++.. +.....    ...........        ........++++.
T Consensus         4 ~kIaViGaG~mG~~iA~~la-~~G~~V~l~d~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a   81 (287)
T PRK08293          4 KNVTVAGAGVLGSQIAFQTA-FHGFDVTIYDISDEAL-EKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEA   81 (287)
T ss_pred             cEEEEECCCHHHHHHHHHHH-hcCCeEEEEeCCHHHH-HHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHH
Confidence            58999999999999999985 5689999999987532 111111    00000000000        0112234688888


Q ss_pred             hhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       234 l~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      ++.||+|+.|+|...+.+.-+-++.-..++++++++..+.+  +....+.+.+.. .-+..++-.|.+-+  +.+.+.|+
T Consensus        82 ~~~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt--~~~~~~~~~~~~-~~r~vg~Hf~~p~~~~~lvevv~~  158 (287)
T PRK08293         82 VKDADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSST--LLPSQFAEATGR-PEKFLALHFANEIWKNNTAEIMGH  158 (287)
T ss_pred             hcCCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECccc--CCHHHHHhhcCC-cccEEEEcCCCCCCcCCeEEEeCC
Confidence            99999999999966555555545566678889988543332  355667777653 23345554333322  45566665


Q ss_pred             c
Q 019387          312 I  312 (342)
Q Consensus       312 i  312 (342)
                      -
T Consensus       159 ~  159 (287)
T PRK08293        159 P  159 (287)
T ss_pred             C
Confidence            3

>PRK06928 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.29  E-value=5.6e-06  Score=77.71  Aligned_cols=106  Identities=17%  Similarity=0.264  Sum_probs=71.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .+|+|||+|+||+.+++.|. ..|    .+|.+|+++...+.+.....+       +    ......+.++++.++|+|+
T Consensus         2 ~~I~iIG~G~mG~ala~~L~-~~g~~~~~~V~~~~r~~~~~~~~l~~~~-------~----~~~~~~~~~e~~~~aDvVi   69 (277)
T PRK06928          2 EKIGFIGYGSMADMIATKLL-ETEVATPEEIILYSSSKNEHFNQLYDKY-------P----TVELADNEAEIFTKCDHSF   69 (277)
T ss_pred             CEEEEECccHHHHHHHHHHH-HCCCCCcccEEEEeCCcHHHHHHHHHHc-------C----CeEEeCCHHHHHhhCCEEE
Confidence            47999999999999999874 445    689999886543322221111       0    0112357788889999999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      +|+|. .....++ .+....++++..+|.+.=|  +..+.|.+.+.
T Consensus        70 lavpp-~~~~~vl-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~  111 (277)
T PRK06928         70 ICVPP-LAVLPLL-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP  111 (277)
T ss_pred             EecCH-HHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            99993 3333333 2333456778899998777  67777887663

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=98.28  E-value=3.8e-06  Score=72.12  Aligned_cols=105  Identities=19%  Similarity=0.293  Sum_probs=64.3

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-hhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|+|+|-|+.|.++|..|+ .-|-+|..|.+.++. .+..... ...........+.......+++++++++|+|++++|
T Consensus         1 KI~ViGaG~~G~AlA~~la-~~g~~V~l~~~~~~~-~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavP   78 (157)
T PF01210_consen    1 KIAVIGAGNWGTALAALLA-DNGHEVTLWGRDEEQ-IEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVP   78 (157)
T ss_dssp             EEEEESSSHHHHHHHHHHH-HCTEEEEEETSCHHH-HHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-
T ss_pred             CEEEECcCHHHHHHHHHHH-HcCCEEEEEeccHHH-HHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEeccc
Confidence            6899999999999999984 678999999998643 2222111 000000001111223345789999999999999999


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      ...  ..-+-+.....++++..+|++..|=
T Consensus        79 s~~--~~~~~~~l~~~l~~~~~ii~~~KG~  106 (157)
T PF01210_consen   79 SQA--HREVLEQLAPYLKKGQIIISATKGF  106 (157)
T ss_dssp             GGG--HHHHHHHHTTTSHTT-EEEETS-SE
T ss_pred             HHH--HHHHHHHHhhccCCCCEEEEecCCc
Confidence            532  2223334445567899999998774

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.27  E-value=5.6e-06  Score=77.76  Aligned_cols=140  Identities=19%  Similarity=0.254  Sum_probs=85.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCCC--------ccccccCCHHHHh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~--------~~~~~~~~l~~ll  234 (342)
                      ++|+|||.|.||..+|..++ ..|.+|++||++++......   ...+... ...+...        ......+++++ +
T Consensus         4 ~kI~VIG~G~mG~~ia~~la-~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~-~~~g~~~~~~~~~~~~~l~~~~~~~~-~   80 (282)
T PRK05808          4 QKIGVIGAGTMGNGIAQVCA-VAGYDVVMVDISDAAVDRGLATITKSLDRL-VKKGKMTEADKEAALARITGTTDLDD-L   80 (282)
T ss_pred             cEEEEEccCHHHHHHHHHHH-HCCCceEEEeCCHHHHHHHHHHHHHHHHHH-HHcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence            57999999999999999984 66999999999876432110   0000011 1111000        01122345554 7


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      ++||+|++|+|-+.+.+.-+-++.-+.++++++++...-|  +....|.+.+... -+..++--+.+-|  +.+.+.|+
T Consensus        81 ~~aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~~~-~r~ig~h~~~P~~~~~~vev~~g  156 (282)
T PRK05808         81 KDADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATKRP-DKVIGMHFFNPVPVMKLVEIIRG  156 (282)
T ss_pred             ccCCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhCCC-cceEEeeccCCcccCccEEEeCC
Confidence            8999999999976666655555566778999988555444  6666888887432 2344444343322  44445555

>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated

Probab=98.27  E-value=3.6e-06  Score=80.29  Aligned_cols=108  Identities=15%  Similarity=0.191  Sum_probs=69.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh-hhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-GQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .+|+|||.|.||..+|..|+ .-|.+|.+|++.++.. +...... ..........+.+.....+.++++++||+|++|+
T Consensus         2 mkI~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v   79 (325)
T PRK00094          2 MKIAVLGAGSWGTALAIVLA-RNGHDVTLWARDPEQA-AEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAV   79 (325)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCEEEEEECCHHHH-HHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeC
Confidence            37999999999999999985 5689999999976432 2211100 0000000000011223457888899999999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCccc
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v  277 (342)
                      |. ..+..++. .....++++.++|+++.|--.
T Consensus        80 ~~-~~~~~v~~-~l~~~~~~~~~vi~~~ngv~~  110 (325)
T PRK00094         80 PS-QALREVLK-QLKPLLPPDAPIVWATKGIEP  110 (325)
T ss_pred             CH-HHHHHHHH-HHHhhcCCCCEEEEEeecccC
Confidence            95 45555553 445567889999999765443

>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1

Probab=98.25  E-value=2.9e-06  Score=73.69  Aligned_cols=110  Identities=20%  Similarity=0.255  Sum_probs=70.7

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcc---CCCC----------cccccc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN---GEQP----------VTWKRA  227 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~---~~~~----------~~~~~~  227 (342)
                      ..+...+|.|+|.|+.|+..++.+ +++|++|..+|.++... +.....+.......   ....          ......
T Consensus        16 ~~~~p~~vvv~G~G~vg~gA~~~~-~~lGa~v~~~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (168)
T PF01262_consen   16 GGVPPAKVVVTGAGRVGQGAAEIA-KGLGAEVVVPDERPERL-RQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYE   93 (168)
T ss_dssp             TEE-T-EEEEESTSHHHHHHHHHH-HHTT-EEEEEESSHHHH-HHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHH
T ss_pred             CCCCCeEEEEECCCHHHHHHHHHH-hHCCCEEEeccCCHHHH-HhhhcccCceEEEcccccccccccchhhhhHHHHHhH
Confidence            456778999999999999999996 89999999999987532 22111111111110   0000          001123


Q ss_pred             CCHHHHhhcCCEEEE-cCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          228 SSMDEVLREADVISL-HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       228 ~~l~~ll~~aDiV~l-~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      ..|.+.++.+|+|+. ++--.+....+|.++.++.||+|+++++++
T Consensus        94 ~~f~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis  139 (168)
T PF01262_consen   94 SNFAEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS  139 (168)
T ss_dssp             HHHHHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred             HHHHHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence            468889999999875 333356778999999999999999999985

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....

>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC

Probab=98.24  E-value=7.9e-06  Score=82.92  Aligned_cols=131  Identities=18%  Similarity=0.266  Sum_probs=87.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH---HHhhhhhhhhccCCCC--------ccccccCCHHHHh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~--------~~~~~~~~l~~ll  234 (342)
                      ++|||||.|.||..||..++ ..|.+|++||++++.....   ....+..+. .++...        .......++++ +
T Consensus         6 ~kV~VIGaG~MG~gIA~~la-~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~-~~G~~~~~~~~~~~~~i~~~~~~~~-l   82 (503)
T TIGR02279         6 VTVAVIGAGAMGAGIAQVAA-SAGHQVLLYDIRAEALARAIAGIEARLNSLV-TKGKLTAEECERTLKRLIPVTDLHA-L   82 (503)
T ss_pred             cEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHHhccEEeCCHHH-h
Confidence            57999999999999999985 5699999999987643211   001111111 111100        01223467766 4


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lI-NvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      ++||+|+.|+|-+.+.+..+-.+.-..++++++|. |++.   ++...+.+++.. ..+..++..|.+-|
T Consensus        83 ~~aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTSt---l~i~~iA~~~~~-p~r~~G~HFf~Pap  148 (503)
T TIGR02279        83 ADAGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSS---LSITAIAAGLAR-PERVAGLHFFNPAP  148 (503)
T ss_pred             CCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC---CCHHHHHHhcCc-ccceEEEeccCccc
Confidence            79999999999888887776666556788888877 6765   444567777753 45677888777656

This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.

>PRK08507 prephenate dehydrogenase; Validated

Probab=98.22  E-value=4.8e-06  Score=77.95  Aligned_cols=100  Identities=18%  Similarity=0.314  Sum_probs=65.9

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      +|||||+|.||+++|+.|+ ..|  .+|++||+++...... .        ..+..    ....+.+++. +||+|++|+
T Consensus         2 ~I~iIG~G~mG~sla~~l~-~~g~~~~v~~~d~~~~~~~~~-~--------~~g~~----~~~~~~~~~~-~aD~Vilav   66 (275)
T PRK08507          2 KIGIIGLGLMGGSLGLALK-EKGLISKVYGYDHNELHLKKA-L--------ELGLV----DEIVSFEELK-KCDVIFLAI   66 (275)
T ss_pred             EEEEEccCHHHHHHHHHHH-hcCCCCEEEEEcCCHHHHHHH-H--------HCCCC----cccCCHHHHh-cCCEEEEeC
Confidence            7999999999999999974 445  5899999987542211 1        11111    1124667765 599999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      |.. ....++ .+... +++++++++++.   + ...+.+++.+
T Consensus        67 p~~-~~~~~~-~~l~~-l~~~~iv~d~gs---~-k~~i~~~~~~  103 (275)
T PRK08507         67 PVD-AIIEIL-PKLLD-IKENTTIIDLGS---T-KAKIIESVPK  103 (275)
T ss_pred             cHH-HHHHHH-HHHhc-cCCCCEEEECcc---c-hHHHHHHHHH
Confidence            953 344444 34445 889999999754   2 3446666644

>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]

Probab=98.21  E-value=2.8e-06  Score=79.71  Aligned_cols=107  Identities=22%  Similarity=0.245  Sum_probs=68.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEE--EEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC-HHHHhhcCCEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNL--IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVIS  241 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V--~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ll~~aDiV~  241 (342)
                      -++|+|+|+|.||+.+|+.| +.-|..|  +++|++......+.            ..........+ ..+.+.+||+|+
T Consensus         3 ~~~v~IvG~GliG~s~a~~l-~~~g~~v~i~g~d~~~~~~~~a~------------~lgv~d~~~~~~~~~~~~~aD~Vi   69 (279)
T COG0287           3 SMKVGIVGLGLMGGSLARAL-KEAGLVVRIIGRDRSAATLKAAL------------ELGVIDELTVAGLAEAAAEADLVI   69 (279)
T ss_pred             CcEEEEECCchHHHHHHHHH-HHcCCeEEEEeecCcHHHHHHHh------------hcCcccccccchhhhhcccCCEEE
Confidence            46899999999999999997 6666655  56666554322221            01111111123 367778899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL  286 (342)
                      +++|- ..|..++.+- ...+|+|+++.+++.=.----++..+.+
T Consensus        70 vavPi-~~~~~~l~~l-~~~l~~g~iv~Dv~S~K~~v~~a~~~~~  112 (279)
T COG0287          70 VAVPI-EATEEVLKEL-APHLKKGAIVTDVGSVKSSVVEAMEKYL  112 (279)
T ss_pred             EeccH-HHHHHHHHHh-cccCCCCCEEEecccccHHHHHHHHHhc
Confidence            99996 4555555443 3379999999999875533333333333

>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated

Probab=98.20  E-value=1.2e-05  Score=81.81  Aligned_cols=131  Identities=21%  Similarity=0.303  Sum_probs=87.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCC-C-------ccccccCCHHHHh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQ-P-------VTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~-~-------~~~~~~~~l~~ll  234 (342)
                      ++|||||.|.||..+|..++ ..|.+|++||++++......   ...++... ..+.. .       .......++++ +
T Consensus         8 ~~V~VIGaG~MG~gIA~~la-~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~-~~G~~~~~~~~~~~~~i~~~~~~~~-~   84 (507)
T PRK08268          8 ATVAVIGAGAMGAGIAQVAA-QAGHTVLLYDARAGAAAAARDGIAARLAKLV-EKGKLTAEQADAALARLRPVEALAD-L   84 (507)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHHhCeEEeCCHHH-h
Confidence            58999999999999999985 56999999999986432210   11111111 11110 0       01223457766 5


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~l-INvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      .+||+|+.++|.+.+.+..+-.+.-..++++++| +|+|.-.+   .++.+++.. .=+..++..|.+-|
T Consensus        85 ~~aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i---~~la~~~~~-p~r~~G~hff~Pa~  150 (507)
T PRK08268         85 ADCDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSI---TAIAAALKH-PERVAGLHFFNPVP  150 (507)
T ss_pred             CCCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCH---HHHHhhcCC-cccEEEEeecCCcc
Confidence            6999999999998888877766655567899999 59987544   467777653 23346777777555

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=98.18  E-value=1e-05  Score=80.11  Aligned_cols=117  Identities=18%  Similarity=0.219  Sum_probs=74.3

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh--------hhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      +|||||+|.||..+|..|+ ..|.+|++||++++.. +.+....        ...+...-... ......++++++++||
T Consensus         2 kI~vIGlG~~G~~lA~~La-~~G~~V~~~d~~~~~v-~~l~~g~~~~~e~~l~~~~~~~~~~g-~l~~~~~~~~~~~~ad   78 (411)
T TIGR03026         2 KIAVIGLGYVGLPLAALLA-DLGHEVTGVDIDQEKV-DKLNKGKSPIYEPGLDELLAKALAAG-RLRATTDYEDAIRDAD   78 (411)
T ss_pred             EEEEECCCchhHHHHHHHH-hcCCeEEEEECCHHHH-HHhhcCCCCCCCCCHHHHHHHhhhcC-CeEEECCHHHHHhhCC
Confidence            6999999999999999984 6789999999987542 2211100        00000000000 0223457888899999


Q ss_pred             EEEEcCCCCcccc------cccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387          239 VISLHPVLDKTTY------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       239 iV~l~~pl~~~t~------~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL  286 (342)
                      +|++|+|......      .+..  ......+++|.++|+.+.-..=..+.+.+.+
T Consensus        79 vvii~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~~~~  134 (411)
T TIGR03026        79 VIIICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVVKPI  134 (411)
T ss_pred             EEEEEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHHHHH
Confidence            9999999653311      1221  3455678999999999865554556665443

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein

Probab=98.17  E-value=7.3e-06  Score=77.46  Aligned_cols=98  Identities=14%  Similarity=0.194  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019387          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (342)
Q Consensus       177 G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~  256 (342)
                      |+.+|++|+ .-|.+|++||++++...+...+.    +...     +....++..+++++||+|++|+|..++++.++ .
T Consensus        32 GspMArnLl-kAGheV~V~Drnrsa~e~e~~e~----Laea-----GA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~  100 (341)
T TIGR01724        32 GSRMAIEFA-MAGHDVVLAEPNREFMSDDLWKK----VEDA-----GVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-R  100 (341)
T ss_pred             HHHHHHHHH-HCCCEEEEEeCChhhhhhhhhHH----HHHC-----CCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-H
Confidence            789999984 66999999998765321110000    1111     22345688999999999999999888888887 5


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       257 ~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ..+..+++|+++||++.   ++.+.+++.|+.
T Consensus       101 GLaa~L~~GaIVID~ST---IsP~t~~~~~e~  129 (341)
T TIGR01724       101 TIIEHVPENAVICNTCT---VSPVVLYYSLEK  129 (341)
T ss_pred             HHHhcCCCCCEEEECCC---CCHHHHHHHHHH
Confidence            68899999999999965   778888888876

This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown.

>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.17  E-value=0.00012  Score=68.69  Aligned_cols=170  Identities=16%  Similarity=0.246  Sum_probs=107.4

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++|+.+.+..     +.|+|+++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--K-------DVDGl~p  123 (284)
T PRK14170         54 KRTEEAGMKSVLIELPE-NVTEEKLLSVVEELNEDKTIHGILVQLPLPEHISEEKVIDTISYD--K-------DVDGFHP  123 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence            44556788887766554 3467777766532     4688998854  344443 33332221  1       2222211


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      .   ..|-.....+ .+...++.-++.++-    .                     .+.++.||++.|||-+. +|+++|
T Consensus       124 ~---N~g~l~~~~~-~~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvVvGrS~iVGkPla  174 (284)
T PRK14170        124 V---NVGNLFIGKD-SFVPCTPAGIIELIK----S---------------------TGTQIEGKRAVVIGRSNIVGKPVA  174 (284)
T ss_pred             h---hhhHHhCCCC-CCCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence            0   0111111112 245556666554441    1                     24679999999999986 699999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|+.+...                            ..++.+..++||+|+.+++.    .++|..+.   
T Consensus       175 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----~~~i~~~~---  218 (284)
T PRK14170        175 QLL-LNENATVTIAHSR----------------------------TKDLPQVAKEADILVVATGL----AKFVKKDY---  218 (284)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEecCC----cCccCHHH---
Confidence            998 5678999877432                            14688999999999999974    46788765   


Q ss_pred             CCCCcEEEEcCCCc
Q 019387          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~ga~lINvaRG~  275 (342)
                      .|+|+++||+|--.
T Consensus       219 vk~GavVIDvGin~  232 (284)
T PRK14170        219 IKPGAIVIDVGMDR  232 (284)
T ss_pred             cCCCCEEEEccCcc
Confidence            56999999998554

>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated

Probab=98.16  E-value=7.5e-06  Score=83.07  Aligned_cols=129  Identities=17%  Similarity=0.118  Sum_probs=80.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-------hhhhhhccCCCCc-cccccCCHHHHhhcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-------YGQFLKANGEQPV-TWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~-~~~~~~~l~~ll~~a  237 (342)
                      ++|||||.|.||..+|..|+ .-|.+|++||+.++... .....       +.. +........ .....+++++++++|
T Consensus         5 ~kIavIG~G~MG~~iA~~la-~~G~~V~v~D~~~~~~~-~~~~~~~~~~~~~~~-l~~~~~~~~g~i~~~~~~~ea~~~a   81 (495)
T PRK07531          5 MKAACIGGGVIGGGWAARFL-LAGIDVAVFDPHPEAER-IIGEVLANAERAYAM-LTDAPLPPEGRLTFCASLAEAVAGA   81 (495)
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHHH-HHHHHHHHHHHHHhh-hccchhhhhhceEeeCCHHHHhcCC
Confidence            48999999999999999985 56999999999876431 11110       000 000000001 123457888999999


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV  301 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~  301 (342)
                      |+|+.++|...+.+..+-++.-..++++++| ..+..++ +...+.+.+...  ....++-+-+
T Consensus        82 D~Vieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~~--~r~~~~hP~n  141 (495)
T PRK07531         82 DWIQESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTHP--ERLFVAHPYN  141 (495)
T ss_pred             CEEEEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCCc--ceEEEEecCC
Confidence            9999999977665654444444567778755 4444443 355777766432  2344554444

>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=98.16  E-value=1.4e-05  Score=76.04  Aligned_cols=116  Identities=15%  Similarity=0.227  Sum_probs=70.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh----hhhhhhccCCC---CccccccCCHHHHhhcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQFLKANGEQ---PVTWKRASSMDEVLREAD  238 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~l~~ll~~aD  238 (342)
                      ++|+|||.|.||..+|..|+ ..|.+|++||++.+.. +.....    .+.. ......   ........++++++++||
T Consensus         5 ~~I~vIGaG~mG~~iA~~l~-~~g~~V~~~d~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~aD   81 (311)
T PRK06130          5 QNLAIIGAGTMGSGIAALFA-RKGLQVVLIDVMEGAL-ERARGVIERALGVY-APLGIASAGMGRIRMEAGLAAAVSGAD   81 (311)
T ss_pred             cEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHH-HHHHHHHHHHHHHh-hhcccHHHHhhceEEeCCHHHHhccCC
Confidence            58999999999999999984 6789999999877542 221110    1100 000000   000122357788889999


Q ss_pred             EEEEcCCCCcccc-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          239 VISLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       239 iV~l~~pl~~~t~-~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      +|++|+|...+.+ .++ ++.-..++++++++...-|  +....+.+.+.
T Consensus        82 lVi~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg--~~~~~l~~~~~  128 (311)
T PRK06130         82 LVIEAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG--LPITAIAQAVT  128 (311)
T ss_pred             EEEEeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC--CCHHHHHhhcC
Confidence            9999999654433 333 3333346777776544333  34567777764

>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2

Probab=98.13  E-value=2.1e-05  Score=71.65  Aligned_cols=140  Identities=19%  Similarity=0.198  Sum_probs=93.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcE---EEEEcCCc----hhH--HHHHHhhhhhhhhccCCCCccccccCCHH
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMN---LIYYDLYQ----ATR--LEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~---V~~~d~~~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (342)
                      ..+.++++.|+|.|.+|+.+|+.| ...|++   ++.+|++.    +..  +..+...+.   +......  .  ..++.
T Consensus        21 ~~l~~~rvlvlGAGgAg~aiA~~L-~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la---~~~~~~~--~--~~~l~   92 (226)
T cd05311          21 KKIEEVKIVINGAGAAGIAIARLL-LAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIA---KETNPEK--T--GGTLK   92 (226)
T ss_pred             CCccCCEEEEECchHHHHHHHHHH-HHcCcCcceEEEEeCCCccccccchhhhHHHHHHH---HHhccCc--c--cCCHH
Confidence            467899999999999999999997 577884   99999983    211  111111111   1111011  1  13687


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC-ceEEEEecCCCCCCCccccc
Q 019387          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP-MFRVGLDVFEVTELGFSSFK  310 (342)
Q Consensus       232 ~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~-i~~aaLDV~~~EP~~~~~tP  310 (342)
                      +.+.++|+|+.+.|     .++++.+.++.|+++.++...+.  ...|.-+.+|.+.|. +..-+...+...=.|.++.|
T Consensus        93 ~~l~~~dvlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsn--P~~e~~~~~A~~~ga~i~a~G~~~~~~Q~nn~~~fP  165 (226)
T cd05311          93 EALKGADVFIGVSR-----PGVVKKEMIKKMAKDPIVFALAN--PVPEIWPEEAKEAGADIVATGRSDFPNQVNNVLGFP  165 (226)
T ss_pred             HHHhcCCEEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCC--CCCcCCHHHHHHcCCcEEEeCCCCCccccceeeecc
Confidence            88899999999886     48899999999999998888883  334554555555444 45555444433337888888


Q ss_pred             ccccc
Q 019387          311 HISTQ  315 (342)
Q Consensus       311 hia~~  315 (342)
                      -++-.
T Consensus       166 g~~~g  170 (226)
T cd05311         166 GIFRG  170 (226)
T ss_pred             hhhHH
Confidence            77543

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph

>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.13  E-value=0.00013  Score=68.40  Aligned_cols=171  Identities=16%  Similarity=0.233  Sum_probs=108.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++|+.+.+..     +.++|+++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLp~~i~~~~i~~~I~p~--K-------DVDGl~~  124 (284)
T PRK14190         55 KAAEKVGIYSELYEFPA-DITEEELLALIDRLNADPRINGILVQLPLPKHIDEKAVIERISPE--K-------DVDGFHP  124 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccCH
Confidence            44566788887766544 3567777765531     4678998754  244443 23322211  1       2233211


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      ..   .|-...+.++ ....++.-++.++    ++                     .+.++.||++.|||-+. +|+++|
T Consensus       125 ~n---~g~l~~~~~~-~~PcTp~av~~lL----~~---------------------~~i~l~Gk~vvViGrS~iVG~Pla  175 (284)
T PRK14190        125 IN---VGRMMLGQDT-FLPCTPHGILELL----KE---------------------YNIDISGKHVVVVGRSNIVGKPVG  175 (284)
T ss_pred             hh---HHHHhcCCCC-CCCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCccHHHHH
Confidence            10   1111222222 4455666555333    11                     13578999999999885 699999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|+.++.+                            ..++++.+++||+|+.++..    .++|+.+.+  
T Consensus       176 ~lL-~~~~atVt~chs~----------------------------t~~l~~~~~~ADIvI~AvG~----p~~i~~~~i--  220 (284)
T PRK14190        176 QLL-LNENATVTYCHSK----------------------------TKNLAELTKQADILIVAVGK----PKLITADMV--  220 (284)
T ss_pred             HHH-HHCCCEEEEEeCC----------------------------chhHHHHHHhCCEEEEecCC----CCcCCHHHc--
Confidence            998 5779999887532                            13788899999999999863    458998876  


Q ss_pred             CCCCcEEEEcCCCcc
Q 019387          262 MKKEAILVNCSRGPV  276 (342)
Q Consensus       262 mk~ga~lINvaRG~~  276 (342)
                       |+|+++||+|.-.+
T Consensus       221 -k~gavVIDvGi~~~  234 (284)
T PRK14190        221 -KEGAVVIDVGVNRL  234 (284)
T ss_pred             -CCCCEEEEeecccc
Confidence             79999999986653

>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.12  E-value=0.00011  Score=69.06  Aligned_cols=187  Identities=21%  Similarity=0.213  Sum_probs=113.9

Q ss_pred             ceEEEEeCCCCchH-----HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHH
Q 019387           15 KYRVVSTKPMPGTR-----WINLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAA   81 (342)
Q Consensus        15 ~~~vl~~~~~~~~~-----~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~   81 (342)
                      +..++...+-+.+.     -.+..++.|.+++....++ ..+++|+.+.+.     ++.|+|+++.+  ..+++. +++.
T Consensus        31 ~Laii~vg~d~as~~Yv~~k~k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~  109 (287)
T PRK14173         31 HLRVVRLGEDPASVSYVRLKDRQAKALGLRSQVEVLPE-STSQEELLELIARLNADPEVDGILVQLPLPPHIDFQRVLEA  109 (287)
T ss_pred             cEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhc
Confidence            44454444444422     1344566788887766544 346777766553     14689998864  244443 2333


Q ss_pred             hhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCccccc
Q 019387           82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN  161 (342)
Q Consensus        82 l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~  161 (342)
                      .+-.  |       -+|.+--.   ..|-...+.+ .....++.-++.++-    +                     .+.
T Consensus       110 I~p~--K-------DVDGl~~~---N~g~l~~~~~-~~~PcTp~avi~lL~----~---------------------~~i  151 (287)
T PRK14173        110 IDPL--K-------DVDGFHPL---NVGRLWMGGE-ALEPCTPAGVVRLLK----H---------------------YGI  151 (287)
T ss_pred             cCcc--c-------cccccChh---hhHHHhcCCC-CCCCCCHHHHHHHHH----H---------------------cCC
Confidence            2211  1       22222110   0111111122 244555655554432    1                     135


Q ss_pred             ccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ++.||++.|||-+. +|+++|.+| ..-|+.|+.+..+                            ..++++..++||+|
T Consensus       152 ~l~Gk~vvViGrS~iVGkPla~lL-~~~~aTVtichs~----------------------------T~~l~~~~~~ADIv  202 (287)
T PRK14173        152 PLAGKEVVVVGRSNIVGKPLAALL-LREDATVTLAHSK----------------------------TQDLPAVTRRADVL  202 (287)
T ss_pred             CCCCCEEEEECCCCccHHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEE
Confidence            78999999999875 699999998 5678999877532                            13788999999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      +.++.-    .++++.+.   .|+|+++||+|--.+
T Consensus       203 IsAvGk----p~~i~~~~---vk~GavVIDVGin~~  231 (287)
T PRK14173        203 VVAVGR----PHLITPEM---VRPGAVVVDVGINRV  231 (287)
T ss_pred             EEecCC----cCccCHHH---cCCCCEEEEccCccc
Confidence            999974    47888776   479999999986553

>PRK06476 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.10  E-value=9.1e-06  Score=75.33  Aligned_cols=104  Identities=16%  Similarity=0.265  Sum_probs=70.8

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCc---EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      +|||||+|+||+.+++.|. ..|.   .+.+++++++.. +.+...+       +    +.....+.++++++||+|++|
T Consensus         2 ~IgiIG~G~mG~aia~~L~-~~g~~~~~i~v~~r~~~~~-~~l~~~~-------~----~~~~~~~~~~~~~~aDvVila   68 (258)
T PRK06476          2 KIGFIGTGAITEAMVTGLL-TSPADVSEIIVSPRNAQIA-ARLAERF-------P----KVRIAKDNQAVVDRSDVVFLA   68 (258)
T ss_pred             eEEEECcCHHHHHHHHHHH-hCCCChheEEEECCCHHHH-HHHHHHc-------C----CceEeCCHHHHHHhCCEEEEE
Confidence            6999999999999999874 4343   357888876542 2221111       0    112346788889999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      +| ......++..  + .+++|.++|.+.  .-+..+.|.+.+..+
T Consensus        69 v~-p~~~~~vl~~--l-~~~~~~~vis~~--ag~~~~~l~~~~~~~  108 (258)
T PRK06476         69 VR-PQIAEEVLRA--L-RFRPGQTVISVI--AATDRAALLEWIGHD  108 (258)
T ss_pred             eC-HHHHHHHHHH--h-ccCCCCEEEEEC--CCCCHHHHHHHhCCC
Confidence            99 3444555433  3 357889999987  347888888887653

>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.10  E-value=0.00013  Score=68.35  Aligned_cols=170  Identities=16%  Similarity=0.232  Sum_probs=107.4

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++|+.+.+..     +.|+++++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        53 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--K-------DVDGl~~  122 (282)
T PRK14169         53 RRAEDIGVRSLMFRLPE-ATTQADLLAKVAELNHDPDVDAILVQLPLPAGLDEQAVIDAIDPD--K-------DVDGFSP  122 (282)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--c-------CcccCCh
Confidence            44556788887766544 3577788766532     4589998864  244433 33333221  1       1222210


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      .   ..|-...+.++ ....++.-++.++=    +                     .+.++.||++.|||-+. +|+++|
T Consensus       123 ~---N~g~l~~~~~~-~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvViGrS~iVGkPla  173 (282)
T PRK14169        123 V---SVGRLWANEPT-VVASTPYGIMALLD----A---------------------YDIDVAGKRVVIVGRSNIVGRPLA  173 (282)
T ss_pred             h---hhHHHhcCCCC-CCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence            0   01111122222 45566666554431    1                     13578999999999986 699999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|+.+..+                            ..++++..++||+|+.+++-    .++|+.+.   
T Consensus       174 ~lL-~~~~atVtichs~----------------------------T~~l~~~~~~ADIvI~AvG~----p~~i~~~~---  217 (282)
T PRK14169        174 GLM-VNHDATVTIAHSK----------------------------TRNLKQLTKEADILVVAVGV----PHFIGADA---  217 (282)
T ss_pred             HHH-HHCCCEEEEECCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH---
Confidence            998 5779999877432                            13688999999999999974    46788874   


Q ss_pred             CCCCcEEEEcCCCc
Q 019387          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~ga~lINvaRG~  275 (342)
                      .|+|+++||+|--.
T Consensus       218 vk~GavVIDvGin~  231 (282)
T PRK14169        218 VKPGAVVIDVGISR  231 (282)
T ss_pred             cCCCcEEEEeeccc
Confidence            67999999998533

>PRK07680 late competence protein ComER; Validated

Probab=98.09  E-value=2e-05  Score=73.72  Aligned_cols=104  Identities=19%  Similarity=0.272  Sum_probs=70.8

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +|||||+|+||+.+++.|. ..|    .+|.+|+++++.. +.+.+.+           .+.....+..+++.+||+|++
T Consensus         2 ~I~iIG~G~mG~ala~~L~-~~g~~~~~~v~v~~r~~~~~-~~~~~~~-----------~g~~~~~~~~~~~~~aDiVil   68 (273)
T PRK07680          2 NIGFIGTGNMGTILIEAFL-ESGAVKPSQLTITNRTPAKA-YHIKERY-----------PGIHVAKTIEEVISQSDLIFI   68 (273)
T ss_pred             EEEEECccHHHHHHHHHHH-HCCCCCcceEEEECCCHHHH-HHHHHHc-----------CCeEEECCHHHHHHhCCEEEE
Confidence            6999999999999999874 445    3799999987542 2221111           012233577888899999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      |+| ......++ ++....++++.++|+++-|  +..+.|.+.+.
T Consensus        69 av~-p~~~~~vl-~~l~~~l~~~~~iis~~ag--~~~~~L~~~~~  109 (273)
T PRK07680         69 CVK-PLDIYPLL-QKLAPHLTDEHCLVSITSP--ISVEQLETLVP  109 (273)
T ss_pred             ecC-HHHHHHHH-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence            997 23444544 3334567788999999844  36676766554

>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF)

Probab=98.08  E-value=1.9e-05  Score=67.97  Aligned_cols=80  Identities=20%  Similarity=0.269  Sum_probs=57.7

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .++.||++.|||-+. +|++++.+| ..-|+.|...+.+.                            .++++.+++||+
T Consensus        32 ~~l~Gk~v~VvGrs~~VG~Pla~lL-~~~~atVt~~h~~T----------------------------~~l~~~~~~ADI   82 (160)
T PF02882_consen   32 IDLEGKKVVVVGRSNIVGKPLAMLL-LNKGATVTICHSKT----------------------------KNLQEITRRADI   82 (160)
T ss_dssp             -STTT-EEEEE-TTTTTHHHHHHHH-HHTT-EEEEE-TTS----------------------------SSHHHHHTTSSE
T ss_pred             CCCCCCEEEEECCcCCCChHHHHHH-HhCCCeEEeccCCC----------------------------CcccceeeeccE
Confidence            579999999999995 999999998 67899998875432                            478889999999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      |+.+.+.    .++|..+   ++|+|+++||++.-..
T Consensus        83 VVsa~G~----~~~i~~~---~ik~gavVIDvG~~~~  112 (160)
T PF02882_consen   83 VVSAVGK----PNLIKAD---WIKPGAVVIDVGINYV  112 (160)
T ss_dssp             EEE-SSS----TT-B-GG---GS-TTEEEEE--CEEE
T ss_pred             Eeeeecc----ccccccc---cccCCcEEEecCCccc
Confidence            9999874    5677765   5689999999987665

Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....

>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=0.00014  Score=68.16  Aligned_cols=169  Identities=16%  Similarity=0.195  Sum_probs=105.7

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+..     +.++++++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        53 k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--K-------DVDGl~~  122 (282)
T PRK14166         53 KACEECGIKSLVYHLNE-NTTQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS--K-------DVDGFHP  122 (282)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence            44556788877765543 3577888776642     4689998864  244443 33332221  1       1222210


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      .   ..|-...+........++.-++.++    ++                     .+.++.||++.|||-+. +|+++|
T Consensus       123 ~---N~g~l~~g~~~~~~PcTp~avi~lL----~~---------------------y~i~l~Gk~vvVvGrS~iVGkPla  174 (282)
T PRK14166        123 I---NVGYLNLGLESGFLPCTPLGVMKLL----KA---------------------YEIDLEGKDAVIIGASNIVGRPMA  174 (282)
T ss_pred             h---hhHHHhcCCCCCCcCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence            0   0011111111123455565555433    11                     13578999999999986 699999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|+.+..+                            ..++++..++||+|+.++.-    .++|..+.   
T Consensus       175 ~lL-~~~~atVt~chs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~---  218 (282)
T PRK14166        175 TML-LNAGATVSVCHIK----------------------------TKDLSLYTRQADLIIVAAGC----VNLLRSDM---  218 (282)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHH---
Confidence            998 5679999877532                            14688999999999999974    46888875   


Q ss_pred             CCCCcEEEEcCC
Q 019387          262 MKKEAILVNCSR  273 (342)
Q Consensus       262 mk~ga~lINvaR  273 (342)
                      .|+|+++||+|-
T Consensus       219 vk~GavVIDvGi  230 (282)
T PRK14166        219 VKEGVIVVDVGI  230 (282)
T ss_pred             cCCCCEEEEecc
Confidence            569999999984

>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=0.00016  Score=68.28  Aligned_cols=171  Identities=20%  Similarity=0.209  Sum_probs=107.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+..     +.++++++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PLP~~i~~~~i~~~I~p~--K-------DVDGl~~  124 (297)
T PRK14186         55 KACARVGIASFGKHLPA-DTSQAEVEALIAQLNQDERVDGILLQLPLPKHLDEVPLLHAIDPD--K-------DADGLHP  124 (297)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence            44566788887665543 3477777765531     4689998864  244433 33333221  1       2233221


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      .   ..|-...+.+. ....++.-++.++-    .                     .+.++.||++.|||-+. +|+++|
T Consensus       125 ~---n~g~l~~~~~~-~~PcTp~aii~lL~----~---------------------~~i~l~Gk~vvVIGrS~iVGkPla  175 (297)
T PRK14186        125 L---NLGRLVKGEPG-LRSCTPAGVMRLLR----S---------------------QQIDIAGKKAVVVGRSILVGKPLA  175 (297)
T ss_pred             h---hHHHHhCCCCC-CCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence            1   11111122222 33455555543331    1                     13578999999999986 699999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|..+...                            ..++++..++||+|+.+++-    .+++..+.   
T Consensus       176 ~lL-~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~---  219 (297)
T PRK14186        176 LML-LAANATVTIAHSR----------------------------TQDLASITREADILVAAAGR----PNLIGAEM---  219 (297)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH---
Confidence            998 5779999877432                            14788999999999999984    36788765   


Q ss_pred             CCCCcEEEEcCCCcc
Q 019387          262 MKKEAILVNCSRGPV  276 (342)
Q Consensus       262 mk~ga~lINvaRG~~  276 (342)
                      .|+|+++||+|--.+
T Consensus       220 ik~gavVIDvGin~~  234 (297)
T PRK14186        220 VKPGAVVVDVGIHRL  234 (297)
T ss_pred             cCCCCEEEEeccccc
Confidence            569999999986553

>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.07  E-value=1.4e-05  Score=74.58  Aligned_cols=170  Identities=15%  Similarity=0.167  Sum_probs=109.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+.     ++.++++++.+  ..+++. +++..+-.  |       -+|.+--
T Consensus        49 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~v~~~I~p~--K-------DVDGl~~  118 (279)
T PRK14178         49 RACERVGIGSVGIELPG-DATTRTVLERIRRLNEDPDINGILVQLPLPKGVDTERVIAAILPE--K-------DVDGFHP  118 (279)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence            44566788887665544 357788876653     14688998864  344443 33332221  1       2233211


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC-HHHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G-~IG~~vA  181 (342)
                      .   ..|-...+.++ ....++.-++.++    ++                     .+.++.|+++.|+|.+ ..|+++|
T Consensus       119 ~---n~g~l~~~~~~-~~PcTp~av~~ll----~~---------------------~~i~l~Gk~V~ViGrs~~vGrpla  169 (279)
T PRK14178        119 L---NLGRLVSGLPG-FAPCTPNGIMTLL----HE---------------------YKISIAGKRAVVVGRSIDVGRPMA  169 (279)
T ss_pred             h---hHHHHhCCCCC-CCCCCHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCccccHHHH
Confidence            0   01111122222 3455555555333    11                     1357899999999999 9999999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..+|++|..+..+.                            .++.+.+++||+|+.+++.    .+++.++.+  
T Consensus       170 ~lL-~~~~atVtv~hs~t----------------------------~~L~~~~~~ADIvI~Avgk----~~lv~~~~v--  214 (279)
T PRK14178        170 ALL-LNADATVTICHSKT----------------------------ENLKAELRQADILVSAAGK----AGFITPDMV--  214 (279)
T ss_pred             HHH-HhCCCeeEEEecCh----------------------------hHHHHHHhhCCEEEECCCc----ccccCHHHc--
Confidence            997 68999998876432                            3688899999999999973    278998875  


Q ss_pred             CCCCcEEEEcCCCc
Q 019387          262 MKKEAILVNCSRGP  275 (342)
Q Consensus       262 mk~ga~lINvaRG~  275 (342)
                       |+|+++||+|-..
T Consensus       215 -k~GavVIDVgi~~  227 (279)
T PRK14178        215 -KPGATVIDVGINQ  227 (279)
T ss_pred             -CCCcEEEEeeccc
Confidence             8999999998443

>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.06  E-value=0.00071  Score=63.57  Aligned_cols=169  Identities=14%  Similarity=0.193  Sum_probs=105.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++++.+.+.     ++.|+|+++.+  ..+++. +++.++-.  |       -+|.+.-
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~LN~D~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDGl~~  124 (288)
T PRK14171         55 KNAHKIGIDTLLVNLST-TIHTNDLISKINELNLDNEISGIIVQLPLPSSIDKNKILSAVSPS--K-------DIDGFHP  124 (288)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------ccccCCc
Confidence            44566788887665543 357788877664     24689998864  244443 33332211  1       2222210


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      .   ..|-............++.-++.+    ++++                     +.++.||++.|||-+. +|+++|
T Consensus       125 ~---N~g~l~~g~~~~~~PcTp~av~~l----L~~y---------------------~i~l~GK~vvViGrS~iVGkPla  176 (288)
T PRK14171        125 L---NVGYLHSGISQGFIPCTALGCLAV----IKKY---------------------EPNLTGKNVVIIGRSNIVGKPLS  176 (288)
T ss_pred             c---chhhhhcCCCCCCcCCCHHHHHHH----HHHh---------------------CCCCCCCEEEEECCCCcchHHHH
Confidence            0   111112222122445555554432    2211                     3578999999999986 699999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|..+..+                            ..+|.+..++||+|+.++.-    .++|..+.   
T Consensus       177 ~lL-~~~~ATVtichs~----------------------------T~~L~~~~~~ADIvV~AvGk----p~~i~~~~---  220 (288)
T PRK14171        177 ALL-LKENCSVTICHSK----------------------------THNLSSITSKADIVVAAIGS----PLKLTAEY---  220 (288)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----CCccCHHH---
Confidence            998 5678999876532                            14788999999999999873    36888865   


Q ss_pred             CCCCcEEEEcCC
Q 019387          262 MKKEAILVNCSR  273 (342)
Q Consensus       262 mk~ga~lINvaR  273 (342)
                      .|+|+++||+|-
T Consensus       221 vk~GavVIDvGi  232 (288)
T PRK14171        221 FNPESIVIDVGI  232 (288)
T ss_pred             cCCCCEEEEeec
Confidence            569999999983

>PRK07634 pyrroline-5-carboxylate reductase; Reviewed

Probab=98.06  E-value=3.4e-05  Score=70.72  Aligned_cols=108  Identities=19%  Similarity=0.271  Sum_probs=67.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcC--CcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGF--KMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~af--g~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +.+|||||.|+||+.+++.+++..  ..+ +++++++...+.+.+...+            +.....++++++.++|+|+
T Consensus         4 ~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~DiVi   71 (245)
T PRK07634          4 KHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARY------------NVSTTTDWKQHVTSVDTIV   71 (245)
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHc------------CcEEeCChHHHHhcCCEEE
Confidence            568999999999999998874331  234 7778765333333322211            1122357888999999999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      +|+|.. ..+.++ ++.-..++ +.++|+++=|  ++.+.|.+.+..+
T Consensus        72 iavp~~-~~~~v~-~~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~  114 (245)
T PRK07634         72 LAMPPS-AHEELL-AELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG  114 (245)
T ss_pred             EecCHH-HHHHHH-HHHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence            999942 223333 22112233 5699999766  5666677666443

>TIGR01035 hemA glutamyl-tRNA reductase

Probab=98.05  E-value=1.7e-05  Score=78.73  Aligned_cols=104  Identities=18%  Similarity=0.264  Sum_probs=73.6

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|++|+|+|.|.||+.+++.| ...| .+|++++++.+.. +.+...+       +..   .....++.+.+.++|+|
T Consensus       177 ~l~~~~VlViGaG~iG~~~a~~L-~~~G~~~V~v~~rs~~ra-~~la~~~-------g~~---~i~~~~l~~~l~~aDvV  244 (417)
T TIGR01035       177 SLKGKKALLIGAGEMGELVAKHL-LRKGVGKILIANRTYERA-EDLAKEL-------GGE---AVKFEDLEEYLAEADIV  244 (417)
T ss_pred             CccCCEEEEECChHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EeeHHHHHHHHhhCCEE
Confidence            36789999999999999999997 5789 6899999987532 2221111       110   11224677888999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCC----CCcEEEEcCCCcccCHH
Q 019387          241 SLHPVLDKTTYHLINKERLATMK----KEAILVNCSRGPVIDEV  280 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk----~ga~lINvaRG~~vd~~  280 (342)
                      +.|++   .+..+++++.++.+.    .+.++||.+...=||.+
T Consensus       245 i~aT~---s~~~ii~~e~l~~~~~~~~~~~~viDla~Prdid~~  285 (417)
T TIGR01035       245 ISSTG---APHPIVSKEDVERALRERTRPLFIIDIAVPRDVDPA  285 (417)
T ss_pred             EECCC---CCCceEcHHHHHHHHhcCCCCeEEEEeCCCCCCChh
Confidence            99976   456788988887652    24599999865545543

This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.

>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.05  E-value=0.00019  Score=67.06  Aligned_cols=185  Identities=17%  Similarity=0.222  Sum_probs=112.2

Q ss_pred             ceEEEEeCCCCchH-H----HHHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHH
Q 019387           15 KYRVVSTKPMPGTR-W----INLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAA   81 (342)
Q Consensus        15 ~~~vl~~~~~~~~~-~----~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~   81 (342)
                      +..++...+-+.+. +    .+..++.|.+++....++ ..+++|+.+.+..     +.++|+++.+  ..+++. +++.
T Consensus        34 ~Laii~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~d~~V~GIlvqlPLP~~~~~~~i~~~  112 (278)
T PRK14172         34 KIASILVGNDGGSIYYMNNQEKVANSLGIDFKKIKLDE-SISEEDLINEIEELNKDNNVHGIMLQLPLPKHLDEKKITNK  112 (278)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhc
Confidence            44455554444422 1    344556788887665543 3567878765532     4689999864  244443 3333


Q ss_pred             hhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCccccc
Q 019387           82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN  161 (342)
Q Consensus        82 l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~  161 (342)
                      ++-.  |       -+|.+--.   ..|-.....++ ....++.-++.++    ++                     .+.
T Consensus       113 I~p~--K-------DVDGl~~~---n~g~l~~g~~~-~~PcTp~av~~lL----~~---------------------~~i  154 (278)
T PRK14172        113 IDAN--K-------DIDCLTFI---SVGKFYKGEKC-FLPCTPNSVITLI----KS---------------------LNI  154 (278)
T ss_pred             cCcc--c-------ccCccCHh---hHHHHhCCCCC-CcCCCHHHHHHHH----HH---------------------hCC
Confidence            2221  1       22222100   11111111222 3444555554332    21                     135


Q ss_pred             ccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ++.||++.|||-+. +|+++|.+| ..-|+.|+.++.+                            ..++.+..++||+|
T Consensus       155 ~l~Gk~vvViGrS~~VGkPla~lL-~~~~AtVt~chs~----------------------------T~~l~~~~~~ADIv  205 (278)
T PRK14172        155 DIEGKEVVVIGRSNIVGKPVAQLL-LNENATVTICHSK----------------------------TKNLKEVCKKADIL  205 (278)
T ss_pred             CCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEE
Confidence            78999999999985 699999998 5779999887532                            13788999999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      +.+++.    .++|..+.   .|+|+++||+|--
T Consensus       206 IsAvGk----p~~i~~~~---ik~gavVIDvGin  232 (278)
T PRK14172        206 VVAIGR----PKFIDEEY---VKEGAIVIDVGTS  232 (278)
T ss_pred             EEcCCC----cCccCHHH---cCCCcEEEEeecc
Confidence            999974    46788875   6799999999743

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=98.04  E-value=2.1e-05  Score=74.88  Aligned_cols=119  Identities=21%  Similarity=0.213  Sum_probs=71.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH--Hh-hhhhhhhccCCCC--------ccccccCCHHHHh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VT-AYGQFLKANGEQP--------VTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~--~~-~~~~~~~~~~~~~--------~~~~~~~~l~~ll  234 (342)
                      ++|+|||.|.||..+|..|+ ..|.+|++||+++.......  .+ .+.. ....+...        .......++++++
T Consensus         3 ~~V~VIG~G~mG~~iA~~la-~~G~~V~v~d~~~~~~~~~~~~~~~~l~~-l~~~g~~~~~~~~~~~~~i~~~~~~~~a~   80 (308)
T PRK06129          3 GSVAIIGAGLIGRAWAIVFA-RAGHEVRLWDADPAAAAAAPAYIAGRLED-LAAFDLLDGEAPDAVLARIRVTDSLADAV   80 (308)
T ss_pred             cEEEEECccHHHHHHHHHHH-HCCCeeEEEeCCHHHHHHHHHHHHHHHHH-HHHcCCCchhhHHHHhcCeEEECcHHHhh
Confidence            47999999999999999984 66999999999875321110  00 0000 01111100        0112346888899


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ++||+|+.|+|...+.+..+-++.-+..++..++...+. . .....+.+.+..
T Consensus        81 ~~ad~Vi~avpe~~~~k~~~~~~l~~~~~~~~ii~ssts-~-~~~~~la~~~~~  132 (308)
T PRK06129         81 ADADYVQESAPENLELKRALFAELDALAPPHAILASSTS-A-LLASAFTEHLAG  132 (308)
T ss_pred             CCCCEEEECCcCCHHHHHHHHHHHHHhCCCcceEEEeCC-C-CCHHHHHHhcCC
Confidence            999999999997654443333332233455555543333 3 345667777743

>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]

Probab=98.04  E-value=1.2e-05  Score=75.35  Aligned_cols=108  Identities=20%  Similarity=0.346  Sum_probs=79.1

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .+...+|.|+|.|-+|...|+. |-++|++|...|.+.+ ++....+.|...      ..........+++.+.++|+|+
T Consensus       165 GV~~~kv~iiGGGvvgtnaAki-A~glgA~Vtild~n~~-rl~~ldd~f~~r------v~~~~st~~~iee~v~~aDlvI  236 (371)
T COG0686         165 GVLPAKVVVLGGGVVGTNAAKI-AIGLGADVTILDLNID-RLRQLDDLFGGR------VHTLYSTPSNIEEAVKKADLVI  236 (371)
T ss_pred             CCCCccEEEECCccccchHHHH-HhccCCeeEEEecCHH-HHhhhhHhhCce------eEEEEcCHHHHHHHhhhccEEE
Confidence            4667789999999999999998 5899999999999874 333322222110      0111223457889999999996


Q ss_pred             Ec--CCCCcccccccCHHHHhcCCCCcEEEEcC--CCcccC
Q 019387          242 LH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGPVID  278 (342)
Q Consensus       242 l~--~pl~~~t~~li~~~~l~~mk~ga~lINva--RG~~vd  278 (342)
                      -.  +|. .....++.++.+++||||+++||++  -|+++.
T Consensus       237 gaVLIpg-akaPkLvt~e~vk~MkpGsVivDVAiDqGGc~E  276 (371)
T COG0686         237 GAVLIPG-AKAPKLVTREMVKQMKPGSVIVDVAIDQGGCFE  276 (371)
T ss_pred             EEEEecC-CCCceehhHHHHHhcCCCcEEEEEEEcCCCcee
Confidence            54  453 5678899999999999999999986  555544

>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II

Probab=98.03  E-value=2.3e-05  Score=75.12  Aligned_cols=101  Identities=17%  Similarity=0.132  Sum_probs=66.3

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHH--hhhhhhhhccC----CCCccccccCCHHHHhhcCCEE
Q 019387          168 VGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFV--TAYGQFLKANG----EQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       168 vgIvG~G~IG~~vA~~l~~afg~~V~~~-d~~~~~~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      |||+|||+||+.+++.+.+.=+++++++ |..++ ......  ..|+.+.....    ....+.....++++++.++|+|
T Consensus         1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~-~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiV   79 (333)
T TIGR01546         1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPD-FEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIV   79 (333)
T ss_pred             CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChH-HHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEE
Confidence            6999999999999998643457888865 53332 111111  12322210000    0001122245799999999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      +.|.|   .+.+..+++.+.+|+++++|+-.-
T Consensus        80 ve~Tp---~~~~~~na~~~~~~GakaVl~~~p  108 (333)
T TIGR01546        80 VDATP---GGIGAKNKPLYEKAGVKAIFQGGE  108 (333)
T ss_pred             EECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence            99875   678899999999999999998754

All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.

>PLN00203 glutamyl-tRNA reductase

Probab=98.03  E-value=2.5e-05  Score=79.30  Aligned_cols=105  Identities=17%  Similarity=0.219  Sum_probs=74.4

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ++.+++|+|||.|.||+.+++.| ...|+ +|++++++.+.. +.+...+.      + ....+....++.+.+.++|+|
T Consensus       263 ~l~~kkVlVIGAG~mG~~~a~~L-~~~G~~~V~V~nRs~era-~~La~~~~------g-~~i~~~~~~dl~~al~~aDVV  333 (519)
T PLN00203        263 SHASARVLVIGAGKMGKLLVKHL-VSKGCTKMVVVNRSEERV-AALREEFP------D-VEIIYKPLDEMLACAAEADVV  333 (519)
T ss_pred             CCCCCEEEEEeCHHHHHHHHHHH-HhCCCCeEEEEeCCHHHH-HHHHHHhC------C-CceEeecHhhHHHHHhcCCEE
Confidence            37799999999999999999997 57887 799999987542 33222210      1 011122235677889999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCC-------CcEEEEcCCCcccC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKK-------EAILVNCSRGPVID  278 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~-------ga~lINvaRG~~vd  278 (342)
                      +.|.|   ..+.+|.++.++.+++       .-+|||.+-..=||
T Consensus       334 IsAT~---s~~pvI~~e~l~~~~~~~~~~~~~~~~IDLAvPRdId  375 (519)
T PLN00203        334 FTSTS---SETPLFLKEHVEALPPASDTVGGKRLFVDISVPRNVG  375 (519)
T ss_pred             EEccC---CCCCeeCHHHHHHhhhcccccCCCeEEEEeCCCCCCc
Confidence            99876   5567899999988743       24899988655444

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=98.02  E-value=1.9e-05  Score=69.48  Aligned_cols=140  Identities=16%  Similarity=0.191  Sum_probs=85.1

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHhh-hhhhhhccCCC-------CccccccCCHHHHhhc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTA-YGQFLKANGEQ-------PVTWKRASSMDEVLRE  236 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~--~~~~~-~~~~~~~~~~~-------~~~~~~~~~l~~ll~~  236 (342)
                      +|+|||.|.||+.+|..++ ..|++|..||++++....  +.... +..+.......       ........+++++. +
T Consensus         1 ~V~ViGaG~mG~~iA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~   78 (180)
T PF02737_consen    1 KVAVIGAGTMGRGIAALFA-RAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-D   78 (180)
T ss_dssp             EEEEES-SHHHHHHHHHHH-HTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-T
T ss_pred             CEEEEcCCHHHHHHHHHHH-hCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-h
Confidence            6999999999999999985 569999999998864221  11111 11111111111       01223457888888 9


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      ||+|+=++|-+-+.+.-+-++.=+.++++++|...+.+  +.-..|.+++. ..-+..++=.|.+.+  |-+-+.||
T Consensus        79 adlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSs--l~i~~la~~~~-~p~R~ig~Hf~~P~~~~~lVEvv~~  152 (180)
T PF02737_consen   79 ADLVIEAIPEDLELKQELFAELDEICPPDTILASNTSS--LSISELAAALS-RPERFIGMHFFNPPHLMPLVEVVPG  152 (180)
T ss_dssp             ESEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SS--S-HHHHHTTSS-TGGGEEEEEE-SSTTT--EEEEEE-
T ss_pred             hheehhhccccHHHHHHHHHHHHHHhCCCceEEecCCC--CCHHHHHhccC-cCceEEEEecccccccCceEEEeCC
Confidence            99999999988787777777777788999988776543  56677777774 344556666564322  44445555

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=98.02  E-value=0.00014  Score=69.63  Aligned_cols=171  Identities=14%  Similarity=0.240  Sum_probs=107.3

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+..     +.|+|+++.+  ..+++. +++.+.-.  |       -+|.+--
T Consensus       109 K~a~~~GI~~~~~~l~~-~~te~ell~~I~~lN~D~~V~GIlVQlPLP~hid~~~i~~~I~p~--K-------DVDGl~p  178 (345)
T PLN02897        109 KACEETGIKSLLAELPE-DCTEGQILSALRKFNEDTSIHGILVQLPLPQHLDESKILNMVRLE--K-------DVDGFHP  178 (345)
T ss_pred             HHHHhcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CccCCCH
Confidence            44566788887765543 3477888776532     4688998854  345544 33322211  1       2233211


Q ss_pred             hHHHhCCeeEec-CCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387          103 NAANKYGIAVGN-TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (342)
Q Consensus       103 ~~~~~~gI~V~n-~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v  180 (342)
                      .   ..|-.... ........++.-++.++-    +                     .+.++.||++.|||-++ +|+++
T Consensus       179 ~---N~G~L~~~~~~~~~~PCTp~avi~LL~----~---------------------~~i~l~GK~vvVIGRS~iVGkPl  230 (345)
T PLN02897        179 L---NVGNLAMRGREPLFVSCTPKGCVELLI----R---------------------SGVEIAGKNAVVIGRSNIVGLPM  230 (345)
T ss_pred             H---HHHHHhcCCCCCCCcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCccccHHH
Confidence            0   01111111 011245556666655441    1                     23579999999999986 59999


Q ss_pred             HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       181 A~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~  260 (342)
                      |.+| ..-|+.|..+..+                            ..++++..++||+|+.+++.    .+++..+.  
T Consensus       231 a~LL-~~~~ATVTicHs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~v~~d~--  275 (345)
T PLN02897        231 SLLL-QRHDATVSTVHAF----------------------------TKDPEQITRKADIVIAAAGI----PNLVRGSW--  275 (345)
T ss_pred             HHHH-HHCCCEEEEEcCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH--
Confidence            9997 5678999876432                            13688899999999999874    46788765  


Q ss_pred             cCCCCcEEEEcCCCc
Q 019387          261 TMKKEAILVNCSRGP  275 (342)
Q Consensus       261 ~mk~ga~lINvaRG~  275 (342)
                       .|+|+++||+|--.
T Consensus       276 -vk~GavVIDVGin~  289 (345)
T PLN02897        276 -LKPGAVVIDVGTTP  289 (345)
T ss_pred             -cCCCCEEEEccccc
Confidence             56999999998533

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=98.01  E-value=2.9e-05  Score=76.38  Aligned_cols=119  Identities=13%  Similarity=0.234  Sum_probs=76.2

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCC------CCccccccCCHHHHhhcCCEE
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE------QPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      +|+|||+|.||..+|..++  .|.+|++||+.++. .+...+...... ..+.      .........+..+++++||+|
T Consensus         2 kI~VIGlGyvGl~~A~~lA--~G~~VigvD~d~~k-v~~l~~g~~~~~-e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~v   77 (388)
T PRK15057          2 KITISGTGYVGLSNGLLIA--QNHEVVALDILPSR-VAMLNDRISPIV-DKEIQQFLQSDKIHFNATLDKNEAYRDADYV   77 (388)
T ss_pred             EEEEECCCHHHHHHHHHHH--hCCcEEEEECCHHH-HHHHHcCCCCCC-CcCHHHHHHhCCCcEEEecchhhhhcCCCEE
Confidence            6999999999999998764  48999999998754 333222110000 0000      001111223466778999999


Q ss_pred             EEcCCCCccc-ccccCH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          241 SLHPVLDKTT-YHLINK-------ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~~pl~~~t-~~li~~-------~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      ++|+|...+- .+.++-       +.+..+++|.++|+.|.-.+=..+.+.+.+.+.
T Consensus        78 ii~Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~  134 (388)
T PRK15057         78 IIATPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTE  134 (388)
T ss_pred             EEeCCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcC
Confidence            9999965221 122221       223337999999999998888888888877653

>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=98.01  E-value=3e-05  Score=73.00  Aligned_cols=79  Identities=23%  Similarity=0.324  Sum_probs=64.5

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .++.||++.|+|.|. +|+++|..| ...|++|..+++..                            .++.+.+++||+
T Consensus       155 i~l~Gk~vvViG~gg~vGkpia~~L-~~~gatVtv~~~~t----------------------------~~L~~~~~~aDI  205 (283)
T PRK14192        155 IELAGKHAVVVGRSAILGKPMAMML-LNANATVTICHSRT----------------------------QNLPELVKQADI  205 (283)
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHH-HhCCCEEEEEeCCc----------------------------hhHHHHhccCCE
Confidence            578999999999998 999999997 57899999887621                            367778899999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      |+.+++. +   ++++.+.   +|+|++++|++-..
T Consensus       206 vI~AtG~-~---~~v~~~~---lk~gavViDvg~n~  234 (283)
T PRK14192        206 IVGAVGK-P---ELIKKDW---IKQGAVVVDAGFHP  234 (283)
T ss_pred             EEEccCC-C---CcCCHHH---cCCCCEEEEEEEee
Confidence            9999962 2   3677654   78999999997543

>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins

Probab=98.00  E-value=4.6e-05  Score=58.62  Aligned_cols=67  Identities=24%  Similarity=0.390  Sum_probs=54.1

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      ..+.+++++|+|.|.+|+.+++.| ... +.+|.+||+                                        |+
T Consensus        19 ~~~~~~~v~i~G~G~~g~~~a~~l-~~~~~~~v~v~~r----------------------------------------di   57 (86)
T cd05191          19 KSLKGKTVVVLGAGEVGKGIAKLL-ADEGGKKVVLCDR----------------------------------------DI   57 (86)
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEEcC----------------------------------------CE
Confidence            357899999999999999999997 466 567776642                                        99


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      ++.|.+.    .+.+.++....+++++++++++
T Consensus        58 ~i~~~~~----~~~~~~~~~~~~~~~~~v~~~a   86 (86)
T cd05191          58 LVTATPA----GVPVLEEATAKINEGAVVIDLA   86 (86)
T ss_pred             EEEcCCC----CCCchHHHHHhcCCCCEEEecC
Confidence            9999874    4566666788899999999874

Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al

>PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional

Probab=98.00  E-value=2.6e-05  Score=82.88  Aligned_cols=107  Identities=19%  Similarity=0.148  Sum_probs=71.0

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      ++|||||+|.||+++|+.+ +..|  .+|++||++++..... .        ..+..   .....++++++.++|+|++|
T Consensus         4 ~~I~IIG~G~mG~ala~~l-~~~G~~~~V~~~d~~~~~~~~a-~--------~~g~~---~~~~~~~~~~~~~aDvVila   70 (735)
T PRK14806          4 GRVVVIGLGLIGGSFAKAL-RERGLAREVVAVDRRAKSLELA-V--------SLGVI---DRGEEDLAEAVSGADVIVLA   70 (735)
T ss_pred             cEEEEEeeCHHHHHHHHHH-HhcCCCCEEEEEECChhHHHHH-H--------HCCCC---CcccCCHHHHhcCCCEEEEC
Confidence            6899999999999999997 5666  5899999987542111 1        11111   01235678889999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      +|.. ....++. .....++++.++++++.-.-...+.+.+.+.
T Consensus        71 vp~~-~~~~vl~-~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~  112 (735)
T PRK14806         71 VPVL-AMEKVLA-DLKPLLSEHAIVTDVGSTKGNVVDAARAVFG  112 (735)
T ss_pred             CCHH-HHHHHHH-HHHHhcCCCcEEEEcCCCchHHHHHHHHhcc
Confidence            9953 3344432 3334568899999998754322444555443

>PRK13304 L-aspartate dehydrogenase; Reviewed

Probab=97.99  E-value=3.6e-05  Score=71.87  Aligned_cols=108  Identities=19%  Similarity=0.345  Sum_probs=70.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~a-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|||||+|.||+.+++.+.+. .++++. ++|++++.. +.+.+.+            +...+.++++++.++|+|++|
T Consensus         2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a-~~~a~~~------------~~~~~~~~~ell~~~DvVvi~   68 (265)
T PRK13304          2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKA-ENLASKT------------GAKACLSIDELVEDVDLVVEC   68 (265)
T ss_pred             CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHH-HHHHHhc------------CCeeECCHHHHhcCCCEEEEc
Confidence            3799999999999999987432 367744 688876532 2221111            112346899999999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNPM  291 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~---~aL~~aL~~g~i  291 (342)
                      .|.  +...   +-....++.|.-++..+-|.+.|.   +.|.++.+++..
T Consensus        69 a~~--~~~~---~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~  114 (265)
T PRK13304         69 ASV--NAVE---EVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNC  114 (265)
T ss_pred             CCh--HHHH---HHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCC
Confidence            873  2221   222334556766777888887764   456666666543

>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.99  E-value=0.00071  Score=63.39  Aligned_cols=187  Identities=17%  Similarity=0.143  Sum_probs=114.7

Q ss_pred             ceEEEEeCCCCchH-----HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHH
Q 019387           15 KYRVVSTKPMPGTR-----WINLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAA   81 (342)
Q Consensus        15 ~~~vl~~~~~~~~~-----~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~   81 (342)
                      +..++...+-+.+.     -.+..++.|.+++....++ ..+++++.+.+.     ++.++++++.+  ..+++. +++.
T Consensus        32 ~LaiI~vg~d~as~~Yv~~k~k~a~~~Gi~~~~~~l~~-~~t~~~l~~~I~~lN~d~~V~GIivqlPLp~~i~~~~i~~~  110 (282)
T PRK14182         32 GLTVVRVGDDPASAIYVRGKRKDCEEVGITSVEHHLPA-TTTQAELLALIARLNADPAVHGILVQLPLPKHVDERAVLDA  110 (282)
T ss_pred             eEEEEEeCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhc
Confidence            34444444444422     1344566788887766543 347787877663     24689998864  344443 3333


Q ss_pred             hhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCccccc
Q 019387           82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN  161 (342)
Q Consensus        82 l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~  161 (342)
                      ++-.  |       -+|.+.-   ...|-...+.++.....++.-++.++    ++                     .+.
T Consensus       111 I~p~--K-------DVDGl~~---~n~g~l~~g~~~~~~PcTp~avi~ll----~~---------------------~~i  153 (282)
T PRK14182        111 ISPA--K-------DADGFHP---FNVGALSIGIAGVPRPCTPAGVMRML----DE---------------------ARV  153 (282)
T ss_pred             cCcc--c-------CcCCCCH---hHHHHHhCCCCCCCCCCCHHHHHHHH----HH---------------------hCC
Confidence            2221  1       2333321   11122222333323445555555333    11                     135


Q ss_pred             ccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ++.||++.|||-+. +|+++|.+| ..-|+.|..+..+                            ..++++..++||+|
T Consensus       154 ~l~Gk~vvViGrS~iVGkPla~lL-~~~~AtVtichs~----------------------------T~nl~~~~~~ADIv  204 (282)
T PRK14182        154 DPKGKRALVVGRSNIVGKPMAMML-LERHATVTIAHSR----------------------------TADLAGEVGRADIL  204 (282)
T ss_pred             CCCCCEEEEECCCCcchHHHHHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEE
Confidence            78999999999986 699999998 5678999887532                            13688899999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      +.+++-    .++|..+.   .|+|+++||+|--.
T Consensus       205 I~AvGk----~~~i~~~~---ik~gaiVIDvGin~  232 (282)
T PRK14182        205 VAAIGK----AELVKGAW---VKEGAVVIDVGMNR  232 (282)
T ss_pred             EEecCC----cCccCHHH---cCCCCEEEEeecee
Confidence            999973    56888865   56999999998544

>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative

Probab=97.97  E-value=0.00035  Score=67.25  Aligned_cols=171  Identities=16%  Similarity=0.177  Sum_probs=105.4

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHh---C--CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALI---G--DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~---~--~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+   .  ++.|+|+++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus       126 K~~e~~GI~~~~~~lpe-~~te~ell~~I~~LN~D~~V~GIlVQlPLP~~id~~~i~~aI~P~--K-------DVDGl~p  195 (364)
T PLN02616        126 KACDSVGINSFEVRLPE-DSTEQEVLKFISGFNNDPSVHGILVQLPLPSHMDEQNILNAVSIE--K-------DVDGFHP  195 (364)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHcCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence            44566787776655443 34777877666   2  24689998864  344443 33332221  1       2232211


Q ss_pred             hHHHhCCeeEecC-CCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387          103 NAANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (342)
Q Consensus       103 ~~~~~~gI~V~n~-~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v  180 (342)
                      .   ..|-..... .......++.-++.    ++++                     .+.++.||++.|||-++ +|+++
T Consensus       196 ~---N~G~L~~g~~~~~f~PCTp~avie----lL~~---------------------y~i~l~GK~vvVIGRS~iVGkPL  247 (364)
T PLN02616        196 L---NIGRLAMRGREPLFVPCTPKGCIE----LLHR---------------------YNVEIKGKRAVVIGRSNIVGMPA  247 (364)
T ss_pred             h---hhHHHhcCCCCCCCCCCCHHHHHH----HHHH---------------------hCCCCCCCEEEEECCCccccHHH
Confidence            0   011111110 11234455555442    2221                     13578999999999986 69999


Q ss_pred             HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       181 A~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~  260 (342)
                      |.+| ..-|+.|..+..+                            ..++++..++||+|+.++..    .++|..+.  
T Consensus       248 a~LL-~~~~ATVTicHs~----------------------------T~nl~~~~r~ADIVIsAvGk----p~~i~~d~--  292 (364)
T PLN02616        248 ALLL-QREDATVSIVHSR----------------------------TKNPEEITREADIIISAVGQ----PNMVRGSW--  292 (364)
T ss_pred             HHHH-HHCCCeEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCcCCHHH--
Confidence            9998 5678999887432                            14788999999999999874    46788865  


Q ss_pred             cCCCCcEEEEcCCCc
Q 019387          261 TMKKEAILVNCSRGP  275 (342)
Q Consensus       261 ~mk~ga~lINvaRG~  275 (342)
                       .|+|+++||+|--.
T Consensus       293 -vK~GAvVIDVGIn~  306 (364)
T PLN02616        293 -IKPGAVVIDVGINP  306 (364)
T ss_pred             -cCCCCEEEeccccc
Confidence             56999999998533

>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.96  E-value=0.00036  Score=65.83  Aligned_cols=171  Identities=14%  Similarity=0.187  Sum_probs=105.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++|+.+.+..     +.++|+++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~PLP~~i~~~~i~~~I~p~--K-------DVDGl~~  123 (297)
T PRK14167         54 RDCEEVGIEAIDVEIDP-DAPAEELYDTIDELNADEDVHGILVQMPVPDHVDDREVLRRIDPA--K-------DVDGFHP  123 (297)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence            44566788887766544 3567777665532     4589998864  244443 33332211  1       2222211


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      .   ..|-...+.+ .+...++.-++.++=    .                     .+.++.||++.|||-+. +|+++|
T Consensus       124 ~---n~g~l~~g~~-~~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvViGrS~iVGkPla  174 (297)
T PRK14167        124 E---NVGRLVAGDA-RFKPCTPHGIQKLLA----A---------------------AGVDTEGADVVVVGRSDIVGKPMA  174 (297)
T ss_pred             h---hhHHHhCCCC-CCCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCcccHHHHH
Confidence            0   0111111222 234555655554331    1                     13578999999999986 699999


Q ss_pred             HHHHhcC---CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHH
Q 019387          182 RMMVEGF---KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (342)
Q Consensus       182 ~~l~~af---g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~  258 (342)
                      .+|.+.+   ++.|..+...                            ..++++..++||+|+.++.-    .++|..+.
T Consensus       175 ~lL~~~~~~~~aTVtvchs~----------------------------T~~l~~~~~~ADIvIsAvGk----p~~i~~~~  222 (297)
T PRK14167        175 NLLIQKADGGNATVTVCHSR----------------------------TDDLAAKTRRADIVVAAAGV----PELIDGSM  222 (297)
T ss_pred             HHHhcCccCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            9985443   7899876421                            14788999999999998863    35888764


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 019387          259 LATMKKEAILVNCSRGP  275 (342)
Q Consensus       259 l~~mk~ga~lINvaRG~  275 (342)
                         .|+|+++||+|--.
T Consensus       223 ---ik~gaiVIDvGin~  236 (297)
T PRK14167        223 ---LSEGATVIDVGINR  236 (297)
T ss_pred             ---cCCCCEEEEccccc
Confidence               67999999998543

>TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type

Probab=97.93  E-value=4.2e-05  Score=73.53  Aligned_cols=95  Identities=18%  Similarity=0.228  Sum_probs=66.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      -+++||||.|.+|+..++.++..+. -+|.+||++++.. +.+.+.+    ...+   ..+....+.++++++||+|++|
T Consensus       128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~-~~~~~~~----~~~g---~~v~~~~~~~eav~~aDiVita  199 (325)
T TIGR02371       128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTR-EKFALRA----SDYE---VPVRAATDPREAVEGCDILVTT  199 (325)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHH----HhhC---CcEEEeCCHHHHhccCCEEEEe
Confidence            4689999999999998776643343 4789999988653 3332221    1111   1123357899999999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      +|.   +.-++..+   .+|+|+.+.++|-
T Consensus       200 T~s---~~P~~~~~---~l~~g~~v~~vGs  223 (325)
T TIGR02371       200 TPS---RKPVVKAD---WVSEGTHINAIGA  223 (325)
T ss_pred             cCC---CCcEecHH---HcCCCCEEEecCC
Confidence            874   44666654   4589999999983

This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity.

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=97.93  E-value=5.2e-05  Score=66.98  Aligned_cols=120  Identities=18%  Similarity=0.219  Sum_probs=69.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh--------hhhhhccCCCCccccccCCHHHHhhcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                      ++|+|+|+|.+|-.+|..|| ..|.+|++||..++. .+......        .+++.... ..-......+.++.+.+|
T Consensus         1 M~I~ViGlGyvGl~~A~~lA-~~G~~V~g~D~~~~~-v~~l~~g~~p~~E~~l~~ll~~~~-~~~~l~~t~~~~~ai~~a   77 (185)
T PF03721_consen    1 MKIAVIGLGYVGLPLAAALA-EKGHQVIGVDIDEEK-VEALNNGELPIYEPGLDELLKENV-SAGRLRATTDIEEAIKDA   77 (185)
T ss_dssp             -EEEEE--STTHHHHHHHHH-HTTSEEEEE-S-HHH-HHHHHTTSSSS-CTTHHHHHHHHH-HTTSEEEESEHHHHHHH-
T ss_pred             CEEEEECCCcchHHHHHHHH-hCCCEEEEEeCChHH-HHHHhhccccccccchhhhhcccc-ccccchhhhhhhhhhhcc
Confidence            48999999999999999985 789999999998753 33322210        00011000 001122346778888999


Q ss_pred             CEEEEcCCCCcccccccC--------HHHHhcCCCCcEEEEcCCCcccCHHHHH-HHHHc
Q 019387          238 DVISLHPVLDKTTYHLIN--------KERLATMKKEAILVNCSRGPVIDEVALV-EHLKQ  288 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~--------~~~l~~mk~ga~lINvaRG~~vd~~aL~-~aL~~  288 (342)
                      |++++|+|......+-.|        +.....++++.++|.-|.-.+=..+.+. ..|++
T Consensus        78 dv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~~~~~~ile~  137 (185)
T PF03721_consen   78 DVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTEELLKPILEK  137 (185)
T ss_dssp             SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHHHHHHHHHHH
T ss_pred             ceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeehHhhhhhhhh
Confidence            999999985444333333        2455678899999999888776566444 44443

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]

Probab=97.93  E-value=4.7e-05  Score=67.95  Aligned_cols=94  Identities=20%  Similarity=0.230  Sum_probs=63.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++++|+|.|+||..+|++++ ..|.+|.+-+++.++..+...+...        ..  . ...+.++..+.+|+|++.+|
T Consensus         2 ~~~~i~GtGniG~alA~~~a-~ag~eV~igs~r~~~~~~a~a~~l~--------~~--i-~~~~~~dA~~~aDVVvLAVP   69 (211)
T COG2085           2 MIIAIIGTGNIGSALALRLA-KAGHEVIIGSSRGPKALAAAAAALG--------PL--I-TGGSNEDAAALADVVVLAVP   69 (211)
T ss_pred             cEEEEeccChHHHHHHHHHH-hCCCeEEEecCCChhHHHHHHHhhc--------cc--c-ccCChHHHHhcCCEEEEecc
Confidence            58999999999999999985 7799999886666554333222110        00  1 23577888999999999999


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      .... .. +.++....++ |.++|++.-.
T Consensus        70 ~~a~-~~-v~~~l~~~~~-~KIvID~tnp   95 (211)
T COG2085          70 FEAI-PD-VLAELRDALG-GKIVIDATNP   95 (211)
T ss_pred             HHHH-Hh-HHHHHHHHhC-CeEEEecCCC
Confidence            7322 22 2244444455 7888887653

>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.93  E-value=0.0007  Score=63.57  Aligned_cols=171  Identities=16%  Similarity=0.234  Sum_probs=106.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+.     ++.++++++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        49 k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~d~~V~GIlvqlPlP~~i~~~~i~~~I~p~--K-------DVDGl~p  118 (287)
T PRK14181         49 KKATDLGMVSKAHRLPS-DATLSDILKLIHRLNNDPNIHGILVQLPLPKHLDAQAILQAISPD--K-------DVDGLHP  118 (287)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCcCHHHHHhccCcc--c-------CcccCCh
Confidence            44556788887765543 347777776663     25689999864  244443 33332221  1       2232211


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      .   ..|-...+........++.-++.++    ++                     .+.++.||++.|||-+. +|+++|
T Consensus       119 ~---n~g~l~~g~~~~~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~iVGkPla  170 (287)
T PRK14181        119 V---NMGKLLLGETDGFIPCTPAGIIELL----KY---------------------YEIPLHGRHVAIVGRSNIVGKPLA  170 (287)
T ss_pred             h---hHHHHhcCCCCCCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence            0   0111111221224455565555432    21                     13578999999999986 699999


Q ss_pred             HHHHhcC----CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHH
Q 019387          182 RMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (342)
Q Consensus       182 ~~l~~af----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~  257 (342)
                      .+|. .-    ++.|+.+..+                            ..++++.+++||+|+.+++.    .+++..+
T Consensus       171 ~lL~-~~~~~~~AtVtvchs~----------------------------T~~l~~~~~~ADIvV~AvG~----p~~i~~~  217 (287)
T PRK14181        171 ALLM-QKHPDTNATVTLLHSQ----------------------------SENLTEILKTADIIIAAIGV----PLFIKEE  217 (287)
T ss_pred             HHHH-hCcCCCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHH
Confidence            9984 44    7888876432                            14789999999999999974    3688887


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q 019387          258 RLATMKKEAILVNCSRGP  275 (342)
Q Consensus       258 ~l~~mk~ga~lINvaRG~  275 (342)
                      .   .|+|+++||+|--.
T Consensus       218 ~---ik~GavVIDvGin~  232 (287)
T PRK14181        218 M---IAEKAVIVDVGTSR  232 (287)
T ss_pred             H---cCCCCEEEEecccc
Confidence            5   56999999998544

>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase

Probab=97.90  E-value=0.00015  Score=61.07  Aligned_cols=80  Identities=21%  Similarity=0.329  Sum_probs=65.5

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      +.++.||++.|+|-+. +|+.+|.+| ...|++|...+.+.                            .++++.+++||
T Consensus        23 ~~~~~gk~v~VvGrs~~vG~pla~lL-~~~gatV~~~~~~t----------------------------~~l~~~v~~AD   73 (140)
T cd05212          23 GVRLDGKKVLVVGRSGIVGAPLQCLL-QRDGATVYSCDWKT----------------------------IQLQSKVHDAD   73 (140)
T ss_pred             CCCCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEeCCCC----------------------------cCHHHHHhhCC
Confidence            4678999999999875 689999987 57899998876431                            36888999999


Q ss_pred             EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      +|+.+++..    ++|+.+.   +|+|++++|++...
T Consensus        74 IVvsAtg~~----~~i~~~~---ikpGa~Vidvg~~~  103 (140)
T cd05212          74 VVVVGSPKP----EKVPTEW---IKPGATVINCSPTK  103 (140)
T ss_pred             EEEEecCCC----CccCHHH---cCCCCEEEEcCCCc
Confidence            999998753    6788765   77999999998766

NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional

>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.88  E-value=0.00053  Score=64.59  Aligned_cols=171  Identities=16%  Similarity=0.199  Sum_probs=105.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+..     +.|+++++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        54 k~a~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~  123 (293)
T PRK14185         54 KACEECGFKSSLIRYES-DVTEEELLAKVRELNQDDDVDGFIVQLPLPKHISEQKVIEAIDYR--K-------DVDGFHP  123 (293)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCCHHHHHhccCcc--c-------CcCCCCH
Confidence            44566788887665544 3467888765531     4689998864  244433 33332221  1       2333321


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      .   ..|-.....++ ....++.-++.++-    +                     .+.++.||++.|||-+. +|+++|
T Consensus       124 ~---N~g~l~~~~~~-~~PcTp~av~~lL~----~---------------------~~i~l~GK~vvViGrS~iVGkPla  174 (293)
T PRK14185        124 I---NVGRMSIGLPC-FVSATPNGILELLK----R---------------------YHIETSGKKCVVLGRSNIVGKPMA  174 (293)
T ss_pred             h---hHHHHhCCCCC-CCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence            1   11111112222 44556665554331    1                     13578999999999986 699999


Q ss_pred             HHHHhc---CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHH
Q 019387          182 RMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (342)
Q Consensus       182 ~~l~~a---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~  258 (342)
                      .+|.+.   +++.|..+..+                            ..++.+..++||+|+.+++.    .++|..+.
T Consensus       175 ~lL~~~~~~~~aTVtvchs~----------------------------T~nl~~~~~~ADIvIsAvGk----p~~i~~~~  222 (293)
T PRK14185        175 QLMMQKAYPGDCTVTVCHSR----------------------------SKNLKKECLEADIIIAALGQ----PEFVKADM  222 (293)
T ss_pred             HHHHcCCCCCCCEEEEecCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH
Confidence            988432   37899876432                            14788999999999999974    46788754


Q ss_pred             HhcCCCCcEEEEcCCCc
Q 019387          259 LATMKKEAILVNCSRGP  275 (342)
Q Consensus       259 l~~mk~ga~lINvaRG~  275 (342)
                         .|+|+++||+|--.
T Consensus       223 ---vk~gavVIDvGin~  236 (293)
T PRK14185        223 ---VKEGAVVIDVGTTR  236 (293)
T ss_pred             ---cCCCCEEEEecCcc
Confidence               67999999998533

>PRK00045 hemA glutamyl-tRNA reductase; Reviewed

Probab=97.88  E-value=5.8e-05  Score=75.10  Aligned_cols=102  Identities=22%  Similarity=0.284  Sum_probs=71.2

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|++|+|+|.|.||+.+++.| ...|+ +|++++++++.. ..+...+       +..   .....++.+.+.++|+|
T Consensus       179 ~~~~~~vlViGaG~iG~~~a~~L-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~~~~~l~~aDvV  246 (423)
T PRK00045        179 DLSGKKVLVIGAGEMGELVAKHL-AEKGVRKITVANRTLERA-EELAEEF-------GGE---AIPLDELPEALAEADIV  246 (423)
T ss_pred             CccCCEEEEECchHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHc-------CCc---EeeHHHHHHHhccCCEE
Confidence            36789999999999999999997 68898 799999987542 2221111       110   11124567778899999


Q ss_pred             EEcCCCCcccccccCHHHHhcC-----CCCcEEEEcCCCcccC
Q 019387          241 SLHPVLDKTTYHLINKERLATM-----KKEAILVNCSRGPVID  278 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~m-----k~ga~lINvaRG~~vd  278 (342)
                      +.|+|   ....++..+.++.+     +++.++||.+-..-+|
T Consensus       247 I~aT~---s~~~~i~~~~l~~~~~~~~~~~~vviDla~Prdid  286 (423)
T PRK00045        247 ISSTG---APHPIIGKGMVERALKARRHRPLLLVDLAVPRDIE  286 (423)
T ss_pred             EECCC---CCCcEEcHHHHHHHHhhccCCCeEEEEeCCCCCCc
Confidence            99986   34566788777654     3567899988544344

>PRK09287 6-phosphogluconate dehydrogenase; Validated

Probab=97.87  E-value=5.3e-05  Score=75.97  Aligned_cols=117  Identities=15%  Similarity=0.218  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc---CCEEEEcCCCCccccc
Q 019387          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLHPVLDKTTYH  252 (342)
Q Consensus       176 IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aDiV~l~~pl~~~t~~  252 (342)
                      ||+.+|++|+ .-|.+|.+||++++.. +.+.+..       +. ..+.....+++++++.   +|+|++|+|..+.+..
T Consensus         1 MG~~mA~nL~-~~G~~V~v~nrt~~~~-~~l~~~~-------g~-~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~   70 (459)
T PRK09287          1 MGKNLALNIA-SHGYTVAVYNRTPEKT-DEFLAEE-------GK-GKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDA   70 (459)
T ss_pred             CcHHHHHHHH-hCCCeEEEECCCHHHH-HHHHHhh-------CC-CCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHH
Confidence            7999999984 6799999999997643 3222110       10 0123345789998875   8999999999988888


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       253 li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      ++ ...+..+.+|.++||.+....-|...+.+.+++..+.....=|.-.++
T Consensus        71 Vi-~~l~~~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~  120 (459)
T PRK09287         71 VI-EQLLPLLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE  120 (459)
T ss_pred             HH-HHHHhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence            88 467888999999999999999999999999988888776666777766

>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase

Probab=97.86  E-value=8.2e-05  Score=71.02  Aligned_cols=102  Identities=22%  Similarity=0.260  Sum_probs=66.1

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +.|++|+|+|.|.||+.+++.| +..| .+|++++++++.. ..+...+       +..   .....++.+.+.++|+|+
T Consensus       176 l~~~~V~ViGaG~iG~~~a~~L-~~~g~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~~~~~l~~aDvVi  243 (311)
T cd05213         176 LKGKKVLVIGAGEMGELAAKHL-AAKGVAEITIANRTYERA-EELAKEL-------GGN---AVPLDELLELLNEADVVI  243 (311)
T ss_pred             ccCCEEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHHc-------CCe---EEeHHHHHHHHhcCCEEE
Confidence            6799999999999999999997 5555 5788999986532 2221222       111   111235778889999999


Q ss_pred             EcCCCCcccccccCHHHHhcC-CCCcEEEEcCCCcccC
Q 019387          242 LHPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVID  278 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~m-k~ga~lINvaRG~~vd  278 (342)
                      .|.|.. +.+.++ +..+... +++.++||.+...-||
T Consensus       244 ~at~~~-~~~~~~-~~~~~~~~~~~~~viDlavPrdi~  279 (311)
T cd05213         244 SATGAP-HYAKIV-ERAMKKRSGKPRLIVDLAVPRDIE  279 (311)
T ss_pred             ECCCCC-chHHHH-HHHHhhCCCCCeEEEEeCCCCCCc
Confidence            999853 331222 2233322 3678999998644344

Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,

>PRK06141 ornithine cyclodeaminase; Validated

Probab=97.85  E-value=9.2e-05  Score=70.79  Aligned_cols=95  Identities=19%  Similarity=0.217  Sum_probs=63.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ..++|+|+|.|.+|+.+++.++..++ .+|.+|++++++ .+.+.+.+    ...+   .......+.++++.+||+|+.
T Consensus       124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~-a~~~a~~~----~~~g---~~~~~~~~~~~av~~aDIVi~  195 (314)
T PRK06141        124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAK-AEALAAEL----RAQG---FDAEVVTDLEAAVRQADIISC  195 (314)
T ss_pred             CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHH----HhcC---CceEEeCCHHHHHhcCCEEEE
Confidence            36799999999999999986543355 579999998754 33333222    1111   112234788999999999988


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      |.|.+   ..++..   +.+++|+.+.-++
T Consensus       196 aT~s~---~pvl~~---~~l~~g~~i~~ig  219 (314)
T PRK06141        196 ATLST---EPLVRG---EWLKPGTHLDLVG  219 (314)
T ss_pred             eeCCC---CCEecH---HHcCCCCEEEeeC
Confidence            87743   456665   4578998544444

>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins

Probab=97.82  E-value=2.5e-05  Score=64.78  Aligned_cols=92  Identities=23%  Similarity=0.329  Sum_probs=52.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      ..+|||||.|++|..+++.| +.-|.+|.+ |+++....... ...            .......++++++.++|+++++
T Consensus        10 ~l~I~iIGaGrVG~~La~aL-~~ag~~v~~v~srs~~sa~~a-~~~------------~~~~~~~~~~~~~~~aDlv~ia   75 (127)
T PF10727_consen   10 RLKIGIIGAGRVGTALARAL-ARAGHEVVGVYSRSPASAERA-AAF------------IGAGAILDLEEILRDADLVFIA   75 (127)
T ss_dssp             --EEEEECTSCCCCHHHHHH-HHTTSEEEEESSCHH-HHHHH-HC--------------TT-----TTGGGCC-SEEEE-
T ss_pred             ccEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCccccccc-ccc------------cccccccccccccccCCEEEEE
Confidence            45899999999999999998 677999886 46655332111 000            0111235778899999999999


Q ss_pred             CCCCcccccccCHHHHhc--CCCCcEEEEcC
Q 019387          244 PVLDKTTYHLINKERLAT--MKKEAILVNCS  272 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~--mk~ga~lINva  272 (342)
                      +|.+.  -.-+-++.-..  .++|.+++=+|
T Consensus        76 vpDda--I~~va~~La~~~~~~~g~iVvHtS  104 (127)
T PF10727_consen   76 VPDDA--IAEVAEQLAQYGAWRPGQIVVHTS  104 (127)
T ss_dssp             S-CCH--HHHHHHHHHCC--S-TT-EEEES-
T ss_pred             echHH--HHHHHHHHHHhccCCCCcEEEECC
Confidence            99542  22222333333  57899999885

This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.

>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.80  E-value=0.00074  Score=63.77  Aligned_cols=172  Identities=17%  Similarity=0.201  Sum_probs=104.1

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+..     +.|+|+++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        56 k~~~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIivqlPlP~~i~~~~i~~~I~p~--K-------DVDGl~~  125 (297)
T PRK14168         56 KTAHRLGFHEIQDNQSV-DITEEELLALIDKYNNDDSIHGILVQLPLPKHINEKKVLNAIDPD--K-------DVDGFHP  125 (297)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------cccccCh
Confidence            44556787877665543 3578888766532     4689998864  244443 33222211  1       2222211


Q ss_pred             hHHHhCCeeEecCC-CCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387          103 NAANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (342)
Q Consensus       103 ~~~~~~gI~V~n~~-~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v  180 (342)
                      .   ..|-...+.. ..+...++.-++.++-    .                     .+.++.||++.|||-+. +|+++
T Consensus       126 ~---n~g~l~~~~~~~~~~PcTp~avi~lL~----~---------------------~~i~l~Gk~vvViGrS~iVGkPl  177 (297)
T PRK14168        126 V---NVGRLMIGGDEVKFLPCTPAGIQEMLV----R---------------------SGVETSGAEVVVVGRSNIVGKPI  177 (297)
T ss_pred             h---hHHHHhcCCCCCCCcCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcccHHH
Confidence            0   0111111111 1234555555554332    1                     13578999999999885 69999


Q ss_pred             HHHHHhc---CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHH
Q 019387          181 ARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (342)
Q Consensus       181 A~~l~~a---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~  257 (342)
                      |.+|.+.   .++.|..+...                            ..++++..++||+|+.++.-    .++|..+
T Consensus       178 a~lL~~~~~~~~atVtv~hs~----------------------------T~~l~~~~~~ADIvVsAvGk----p~~i~~~  225 (297)
T PRK14168        178 ANMMTQKGPGANATVTIVHTR----------------------------SKNLARHCQRADILIVAAGV----PNLVKPE  225 (297)
T ss_pred             HHHHHhcccCCCCEEEEecCC----------------------------CcCHHHHHhhCCEEEEecCC----cCccCHH
Confidence            9998432   27889876422                            13688899999999999864    4678876


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q 019387          258 RLATMKKEAILVNCSRGP  275 (342)
Q Consensus       258 ~l~~mk~ga~lINvaRG~  275 (342)
                      .   .|+|+++||+|--.
T Consensus       226 ~---ik~gavVIDvGin~  240 (297)
T PRK14168        226 W---IKPGATVIDVGVNR  240 (297)
T ss_pred             H---cCCCCEEEecCCCc
Confidence            5   56999999998544

>PRK07340 ornithine cyclodeaminase; Validated

Probab=97.80  E-value=0.00014  Score=69.21  Aligned_cols=94  Identities=12%  Similarity=0.093  Sum_probs=67.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ..++++|+|.|.+|+..++.++..++. +|.+|++++++ .+.+.+.+.    ..   ..... ..+.++++.++|+|+.
T Consensus       124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~-a~~~a~~~~----~~---~~~~~-~~~~~~av~~aDiVit  194 (304)
T PRK07340        124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAAS-AAAFCAHAR----AL---GPTAE-PLDGEAIPEAVDLVVT  194 (304)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHH-HHHHHHHHH----hc---CCeeE-ECCHHHHhhcCCEEEE
Confidence            467999999999999999987444664 69999998754 333333221    11   11111 4688999999999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |.|.+   ..+|..    .+|||+.++.+|.
T Consensus       195 aT~s~---~Pl~~~----~~~~g~hi~~iGs  218 (304)
T PRK07340        195 ATTSR---TPVYPE----AARAGRLVVAVGA  218 (304)
T ss_pred             ccCCC---CceeCc----cCCCCCEEEecCC
Confidence            99853   466654    3699999999983

>PRK11880 pyrroline-5-carboxylate reductase; Reviewed

Probab=97.78  E-value=0.0001  Score=68.43  Aligned_cols=102  Identities=22%  Similarity=0.322  Sum_probs=65.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCC---cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .+|+|||+|+||+.+|+.|. .-|   .+|.+|+++++.. +.+...+       +     .....+.++++.++|+|++
T Consensus         3 m~I~iIG~G~mG~~la~~l~-~~g~~~~~v~v~~r~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~advVil   68 (267)
T PRK11880          3 KKIGFIGGGNMASAIIGGLL-ASGVPAKDIIVSDPSPEKR-AALAEEY-------G-----VRAATDNQEAAQEADVVVL   68 (267)
T ss_pred             CEEEEEechHHHHHHHHHHH-hCCCCcceEEEEcCCHHHH-HHHHHhc-------C-----CeecCChHHHHhcCCEEEE
Confidence            47999999999999999874 456   6899999986542 2221111       1     1123577788899999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      |+|. ...+.++.. ....+  +..+|++.-|-  ..+.+.+.+.
T Consensus        69 ~v~~-~~~~~v~~~-l~~~~--~~~vvs~~~gi--~~~~l~~~~~  107 (267)
T PRK11880         69 AVKP-QVMEEVLSE-LKGQL--DKLVVSIAAGV--TLARLERLLG  107 (267)
T ss_pred             EcCH-HHHHHHHHH-HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence            9983 233333322 12222  45788776553  5666666654

>PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline []

Probab=97.77  E-value=0.00014  Score=69.47  Aligned_cols=99  Identities=20%  Similarity=0.203  Sum_probs=61.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      +++||+|.|..|+.-++.++..++. +|.+|+|+++. .+++.+.+    ..   ....+...++.++++++||+|+.|.
T Consensus       129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~-~~~~~~~~----~~---~~~~v~~~~~~~~av~~aDii~taT  200 (313)
T PF02423_consen  129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPER-AEAFAARL----RD---LGVPVVAVDSAEEAVRGADIIVTAT  200 (313)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHH-HHHHHHHH----HC---CCTCEEEESSHHHHHTTSSEEEE--
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhH-HHHHHHhh----cc---ccccceeccchhhhcccCCEEEEcc
Confidence            5899999999999999887555666 78999998753 34444332    22   1233445689999999999999998


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      |.+..+ -+++.+   .+++|+.++.+|....
T Consensus       201 ~s~~~~-P~~~~~---~l~~g~hi~~iGs~~~  228 (313)
T PF02423_consen  201 PSTTPA-PVFDAE---WLKPGTHINAIGSYTP  228 (313)
T ss_dssp             --SSEE-ESB-GG---GS-TT-EEEE-S-SST
T ss_pred             CCCCCC-ccccHH---HcCCCcEEEEecCCCC
Confidence            865433 677765   6789999999986543

The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A.

>COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism]

Probab=97.76  E-value=0.00024  Score=66.13  Aligned_cols=100  Identities=24%  Similarity=0.350  Sum_probs=72.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      ++|||||.|+||++++.-|. .-|    .+|++.+|+.+.+. .+.+.|+       .     ....+.+++..++|+|+
T Consensus         2 ~~IgfIG~G~Mg~Ai~~gl~-~~g~~~~~~I~v~~~~~e~~~-~l~~~~g-------~-----~~~~~~~~~~~~advv~   67 (266)
T COG0345           2 MKIGFIGAGNMGEAILSGLL-KSGALPPEEIIVTNRSEEKRA-ALAAEYG-------V-----VTTTDNQEAVEEADVVF   67 (266)
T ss_pred             ceEEEEccCHHHHHHHHHHH-hcCCCCcceEEEeCCCHHHHH-HHHHHcC-------C-----cccCcHHHHHhhCCEEE
Confidence            48999999999999998874 445    58999999887653 2333331       1     11467788999999999


Q ss_pred             EcCCCCcccccccCHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHH
Q 019387          242 LHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk---~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      +++.  |+    .-.+.++.++   ++.++|.++=|  |..+.|.+.|.
T Consensus        68 LavK--Pq----~~~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~  108 (266)
T COG0345          68 LAVK--PQ----DLEEVLSKLKPLTKDKLVISIAAG--VSIETLERLLG  108 (266)
T ss_pred             EEeC--hH----hHHHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcC
Confidence            9986  32    2245566665   68999999876  56677887775

>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase

Probab=97.75  E-value=0.00022  Score=63.04  Aligned_cols=95  Identities=21%  Similarity=0.243  Sum_probs=65.9

Q ss_pred             cccccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc-----cCCHHH
Q 019387          159 VGNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-----ASSMDE  232 (342)
Q Consensus       159 ~~~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~  232 (342)
                      .+.++.||++.|||-+. +|+++|.+| ..-|+.|+.+|.+.-..            ...+........     ..++.+
T Consensus        56 ~~~~l~GK~vvVIGrS~iVGkPla~lL-~~~~AtVti~~~~~~~~------------~~~~~~~~hs~t~~~~~~~~l~~  122 (197)
T cd01079          56 YGNRLYGKTITIINRSEVVGRPLAALL-ANDGARVYSVDINGIQV------------FTRGESIRHEKHHVTDEEAMTLD  122 (197)
T ss_pred             cCCCCCCCEEEEECCCccchHHHHHHH-HHCCCEEEEEecCcccc------------cccccccccccccccchhhHHHH
Confidence            36789999999999986 599999998 56799999987432110            000000000000     112788


Q ss_pred             HhhcCCEEEEcCCCCcccccc-cCHHHHhcCCCCcEEEEcCC
Q 019387          233 VLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSR  273 (342)
Q Consensus       233 ll~~aDiV~l~~pl~~~t~~l-i~~~~l~~mk~ga~lINvaR  273 (342)
                      .+++||+|+.+++.    .++ |..+.   .|+|+++||+|-
T Consensus       123 ~~~~ADIVIsAvG~----~~~~i~~d~---ik~GavVIDVGi  157 (197)
T cd01079         123 CLSQSDVVITGVPS----PNYKVPTEL---LKDGAICINFAS  157 (197)
T ss_pred             HhhhCCEEEEccCC----CCCccCHHH---cCCCcEEEEcCC
Confidence            99999999999984    455 77765   569999999983

The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional

>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=97.73  E-value=0.00028  Score=63.93  Aligned_cols=115  Identities=23%  Similarity=0.293  Sum_probs=86.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH---hhcCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---LREADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---l~~aDiV~l  242 (342)
                      .++|+||+|+||..++++| ..-|-+|++||.++....+...         .+     ....++++++   |..--+|-+
T Consensus         1 M~iGmiGLGrMG~n~v~rl-~~~ghdvV~yD~n~~av~~~~~---------~g-----a~~a~sl~el~~~L~~pr~vWl   65 (300)
T COG1023           1 MQIGMIGLGRMGANLVRRL-LDGGHDVVGYDVNQTAVEELKD---------EG-----ATGAASLDELVAKLSAPRIVWL   65 (300)
T ss_pred             CcceeeccchhhHHHHHHH-HhCCCeEEEEcCCHHHHHHHHh---------cC-----CccccCHHHHHHhcCCCcEEEE
Confidence            3789999999999999997 6789999999999876533211         12     2234566665   456789999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV  298 (342)
                      .+|...-|...|+. .-..|.+|-++|+-+-..--|.....+.|++..|.  .+||
T Consensus        66 MvPag~it~~vi~~-la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~--flD~  118 (300)
T COG1023          66 MVPAGDITDAVIDD-LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIH--FLDV  118 (300)
T ss_pred             EccCCCchHHHHHH-HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCCe--EEec
Confidence            99987777776654 44667889999999988888888888888877664  4564

>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed

Probab=97.72  E-value=0.00019  Score=67.35  Aligned_cols=118  Identities=18%  Similarity=0.189  Sum_probs=74.5

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.++++.|+|.|.+|++++..| ...| .+|++++|+.+. .++..+.+.    ...  ...+  ..++.+.+.++|+|
T Consensus       120 ~~~~k~vlVlGaGg~a~ai~~aL-~~~g~~~V~v~~R~~~~-a~~l~~~~~----~~~--~~~~--~~~~~~~~~~~Div  189 (278)
T PRK00258        120 DLKGKRILILGAGGAARAVILPL-LDLGVAEITIVNRTVER-AEELAKLFG----ALG--KAEL--DLELQEELADFDLI  189 (278)
T ss_pred             CCCCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhh----hcc--ceee--cccchhccccCCEE
Confidence            57799999999999999999998 5889 689999998753 233222221    000  0111  11345677889999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      +.++|..-....-.+.-.+..++++.+++++.-.+. .+.=|.+|-+.|.
T Consensus       190 InaTp~g~~~~~~~~~~~~~~l~~~~~v~DivY~P~-~T~ll~~A~~~G~  238 (278)
T PRK00258        190 INATSAGMSGELPLPPLPLSLLRPGTIVYDMIYGPL-PTPFLAWAKAQGA  238 (278)
T ss_pred             EECCcCCCCCCCCCCCCCHHHcCCCCEEEEeecCCC-CCHHHHHHHHCcC
Confidence            999997543211111222356678899999977553 4443444444443

>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase

Probab=97.71  E-value=0.00028  Score=62.49  Aligned_cols=111  Identities=18%  Similarity=0.152  Sum_probs=69.8

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCC--CccccccCCHHHHhhcC
Q 019387          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREA  237 (342)
Q Consensus       161 ~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ll~~a  237 (342)
                      ..+.++++.|+|- |.+|+.+++.|+ ..|.+|..++|+.+. .+...+.+.+   ..+..  ........++.+.+.++
T Consensus        24 ~~l~~~~vlVlGgtG~iG~~~a~~l~-~~g~~V~l~~R~~~~-~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~   98 (194)
T cd01078          24 KDLKGKTAVVLGGTGPVGQRAAVLLA-REGARVVLVGRDLER-AQKAADSLRA---RFGEGVGAVETSDDAARAAAIKGA   98 (194)
T ss_pred             cCCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEcCCHHH-HHHHHHHHHh---hcCCcEEEeeCCCHHHHHHHHhcC
Confidence            4578999999995 999999999984 678899999987643 3332221110   00000  00011123455788999


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~  280 (342)
                      |+|+.+.|....+  .+.  .-...+++.+++|+.+...++..
T Consensus        99 diVi~at~~g~~~--~~~--~~~~~~~~~vv~D~~~~~~~~~~  137 (194)
T cd01078          99 DVVFAAGAAGVEL--LEK--LAWAPKPLAVAADVNAVPPVGIE  137 (194)
T ss_pred             CEEEECCCCCcee--chh--hhcccCceeEEEEccCCCCCCcc
Confidence            9999998865431  111  11234568899999888766543

Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo

>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.70  E-value=0.00016  Score=67.57  Aligned_cols=168  Identities=18%  Similarity=0.228  Sum_probs=104.5

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++++.+.+.     ++.++++++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        54 k~a~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~D~~V~GIlvq~PlP~~i~~~~i~~~I~p~--K-------DVDGl~~  123 (281)
T PRK14183         54 KACDRVGIYSITHEMPS-TISQKEILETIAMMNNNPNIDGILVQLPLPKHIDTTKILEAIDPK--K-------DVDGFHP  123 (281)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCccCeEEEeCCCCCCCCHHHHHhccCch--h-------cccccCh
Confidence            44456787877665443 346777766553     14689998864  344443 33333221  1       1222210


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC-HHHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G-~IG~~vA  181 (342)
                      .   ..|-.....++ ....++.-++.++    ++                     .+.++.||++.|||-| -+|+++|
T Consensus       124 ~---n~g~l~~g~~~-~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~~VG~Pla  174 (281)
T PRK14183        124 Y---NVGRLVTGLDG-FVPCTPLGVMELL----EE---------------------YEIDVKGKDVCVVGASNIVGKPMA  174 (281)
T ss_pred             h---hhhHHhcCCCC-CCCCcHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCCcchHHHH
Confidence            0   01111112222 3445555554332    21                     1357999999999999 8899999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|..+..+                            ..++.+..++||+|+.++.-    .+++..+.   
T Consensus       175 ~lL-~~~~AtVti~hs~----------------------------T~~l~~~~~~ADIvV~AvGk----p~~i~~~~---  218 (281)
T PRK14183        175 ALL-LNANATVDICHIF----------------------------TKDLKAHTKKADIVIVGVGK----PNLITEDM---  218 (281)
T ss_pred             HHH-HHCCCEEEEeCCC----------------------------CcCHHHHHhhCCEEEEecCc----ccccCHHH---
Confidence            998 5678999876422                            13688899999999999873    46788765   


Q ss_pred             CCCCcEEEEcCC
Q 019387          262 MKKEAILVNCSR  273 (342)
Q Consensus       262 mk~ga~lINvaR  273 (342)
                      .|+|+++||+|-
T Consensus       219 vk~gavvIDvGi  230 (281)
T PRK14183        219 VKEGAIVIDIGI  230 (281)
T ss_pred             cCCCcEEEEeec
Confidence            569999999984

>PRK08229 2-dehydropantoate 2-reductase; Provisional

Probab=97.69  E-value=0.00021  Score=68.70  Aligned_cols=120  Identities=18%  Similarity=0.202  Sum_probs=72.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcc-CCC----CccccccCCHHHHhhcCCEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQ----PVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~----~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+|+|||.|.||..+|..|+ .-|.+|.+||+.+.  .+... ..+...... +..    +.......+. +.+..+|+|
T Consensus         3 mkI~IiG~G~mG~~~A~~L~-~~G~~V~~~~r~~~--~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~v   77 (341)
T PRK08229          3 ARICVLGAGSIGCYLGGRLA-AAGADVTLIGRARI--GDELR-AHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLV   77 (341)
T ss_pred             ceEEEECCCHHHHHHHHHHH-hcCCcEEEEecHHH--HHHHH-hcCceeecCCCcceecccceeEeccCh-hhccCCCEE
Confidence            47999999999999999984 56899999998542  12111 111000000 000    0001112344 567899999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~  293 (342)
                      ++|+|. ++....+ +.....++++.++|.+.-| +-..+.+.+.+.+.++..
T Consensus        78 il~vk~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~~~  127 (341)
T PRK08229         78 LVTVKS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATVLA  127 (341)
T ss_pred             EEEecC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcEEE
Confidence            999985 4445444 3455567889999888544 444566777776555443

>PRK06823 ornithine cyclodeaminase; Validated

Probab=97.69  E-value=0.00016  Score=69.18  Aligned_cols=94  Identities=13%  Similarity=0.149  Sum_probs=68.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      -++++|+|.|..|+.-++.++..+.. +|.+|+++++.. +++.+.    .+..   ...+...++.++++++||+|+.|
T Consensus       128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~~~~~----~~~~---~~~v~~~~~~~~av~~ADIV~ta  199 (315)
T PRK06823        128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETAL-EEYRQY----AQAL---GFAVNTTLDAAEVAHAANLIVTT  199 (315)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHH----HHhc---CCcEEEECCHHHHhcCCCEEEEe
Confidence            46999999999999999887545544 799999998653 333221    2111   12233457899999999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .|   .+.-+|..+   .+|+|+.++.+|
T Consensus       200 T~---s~~P~~~~~---~l~~G~hi~~iG  222 (315)
T PRK06823        200 TP---SREPLLQAE---DIQPGTHITAVG  222 (315)
T ss_pred             cC---CCCceeCHH---HcCCCcEEEecC
Confidence            77   445777765   467999999997

>PRK08618 ornithine cyclodeaminase; Validated

Probab=97.68  E-value=0.00026  Score=68.02  Aligned_cols=96  Identities=16%  Similarity=0.160  Sum_probs=66.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ..++++|+|.|.+|+..++.++...+. +|.+|+++++. .+++.+.+.    ..  .+..+....+++++++++|+|++
T Consensus       126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~-a~~~~~~~~----~~--~~~~~~~~~~~~~~~~~aDiVi~  198 (325)
T PRK08618        126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEK-AYAFAQEIQ----SK--FNTEIYVVNSADEAIEEADIIVT  198 (325)
T ss_pred             CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHH-HHHHHHHHH----Hh--cCCcEEEeCCHHHHHhcCCEEEE
Confidence            367999999999999998776444565 68899998754 333332221    11  01112235788999999999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |.|..   +-++.    +.+|+|+.++.+|-
T Consensus       199 aT~s~---~p~i~----~~l~~G~hV~~iGs  222 (325)
T PRK08618        199 VTNAK---TPVFS----EKLKKGVHINAVGS  222 (325)
T ss_pred             ccCCC---CcchH----HhcCCCcEEEecCC
Confidence            99854   34554    46699999988864

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=97.67  E-value=0.0002  Score=67.64  Aligned_cols=119  Identities=13%  Similarity=0.226  Sum_probs=71.6

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcc-CCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|+|+|.|.||..+|..|+ .-|.+|.+|++ .+ ..+...+ .+...... +..........+.++....+|+|++|+|
T Consensus         2 kI~IiG~G~iG~~~a~~L~-~~g~~V~~~~r-~~-~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk   77 (305)
T PRK12921          2 RIAVVGAGAVGGTFGGRLL-EAGRDVTFLVR-PK-RAKALRE-RGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVK   77 (305)
T ss_pred             eEEEECCCHHHHHHHHHHH-HCCCceEEEec-HH-HHHHHHh-CCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEec
Confidence            6999999999999999985 55899999998 33 3332211 11001100 0000011123456677789999999998


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      . .++...+ +......+++.++|.+.-| +-.++.+.+.+.+.++.
T Consensus        78 ~-~~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~  121 (305)
T PRK12921         78 A-YQLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL  121 (305)
T ss_pred             c-cCHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence            5 3333333 2333345678888877555 34467777777655544

>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]

Probab=97.63  E-value=0.00011  Score=69.53  Aligned_cols=107  Identities=13%  Similarity=0.219  Sum_probs=79.7

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV~l~  243 (342)
                      -++|||||+|++|+-.|+.| -..|..|...||..-....+   .|            +....+.+.++. +++|+|.+|
T Consensus        52 tl~IaIIGfGnmGqflAetl-i~aGh~li~hsRsdyssaa~---~y------------g~~~ft~lhdlcerhpDvvLlc  115 (480)
T KOG2380|consen   52 TLVIAIIGFGNMGQFLAETL-IDAGHGLICHSRSDYSSAAE---KY------------GSAKFTLLHDLCERHPDVVLLC  115 (480)
T ss_pred             ceEEEEEecCcHHHHHHHHH-HhcCceeEecCcchhHHHHH---Hh------------cccccccHHHHHhcCCCEEEEE
Confidence            35899999999999999998 57799999999876332221   11            122345677766 568999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      +-- ..+..++-.--++++|.|++++++-.-....-+++.+-|-+
T Consensus       116 tsi-lsiekilatypfqrlrrgtlfvdvlSvKefek~lfekYLPk  159 (480)
T KOG2380|consen  116 TSI-LSIEKILATYPFQRLRRGTLFVDVLSVKEFEKELFEKYLPK  159 (480)
T ss_pred             ehh-hhHHHHHHhcCchhhccceeEeeeeecchhHHHHHHHhCcc
Confidence            753 45556666666788999999999988888888888888844

>PRK14982 acyl-ACP reductase; Provisional

Probab=97.62  E-value=0.00043  Score=66.69  Aligned_cols=102  Identities=29%  Similarity=0.384  Sum_probs=72.4

Q ss_pred             ccccCCCeEEEEec-CHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       160 ~~~L~gktvgIvG~-G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                      +..+.|++|.|+|. |.||+.+++.|+...|. +++.+++... +.......+       .     .....++++.+.++
T Consensus       150 g~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~-rl~~La~el-------~-----~~~i~~l~~~l~~a  216 (340)
T PRK14982        150 GIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQE-RLQELQAEL-------G-----GGKILSLEEALPEA  216 (340)
T ss_pred             ccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHH-HHHHHHHHh-------c-----cccHHhHHHHHccC
Confidence            45689999999999 89999999998534564 8888888654 222221111       0     00124688999999


Q ss_pred             CEEEEcCCCCccccc-ccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 019387          238 DVISLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       238 DiV~l~~pl~~~t~~-li~~~~l~~mk~ga~lINvaRG~~vd~~  280 (342)
                      |+|+.+...   ... .++.+.+   +++.++||+|+..=||.+
T Consensus       217 DiVv~~ts~---~~~~~I~~~~l---~~~~~viDiAvPRDVd~~  254 (340)
T PRK14982        217 DIVVWVASM---PKGVEIDPETL---KKPCLMIDGGYPKNLDTK  254 (340)
T ss_pred             CEEEECCcC---CcCCcCCHHHh---CCCeEEEEecCCCCCCcc
Confidence            999877642   234 4777654   799999999999888864

>PRK06046 alanine dehydrogenase; Validated

Probab=97.60  E-value=0.00045  Score=66.42  Aligned_cols=94  Identities=20%  Similarity=0.294  Sum_probs=64.7

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      -+++||+|.|.+|+..++.++...+. +|.+||++++.. +++.+.+.    ..  .+..+....+++++++ +|+|++|
T Consensus       129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~-~~~~~~~~----~~--~~~~v~~~~~~~~~l~-aDiVv~a  200 (326)
T PRK06046        129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSA-EKFVERMS----SV--VGCDVTVAEDIEEACD-CDILVTT  200 (326)
T ss_pred             CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHH-HHHHHHHH----hh--cCceEEEeCCHHHHhh-CCEEEEe
Confidence            36899999999999999887544566 566799987543 33322221    00  1112233568899987 9999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .|.   +.-+|..+.   +|+|+.+..+|
T Consensus       201 Tps---~~P~~~~~~---l~~g~hV~~iG  223 (326)
T PRK06046        201 TPS---RKPVVKAEW---IKEGTHINAIG  223 (326)
T ss_pred             cCC---CCcEecHHH---cCCCCEEEecC
Confidence            985   346777654   58999988887

>PTZ00431 pyrroline carboxylate reductase; Provisional

Probab=97.58  E-value=0.00022  Score=66.31  Aligned_cols=96  Identities=22%  Similarity=0.307  Sum_probs=61.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhc--C-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEG--F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~a--f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .+|||||+|+||+++++.|.++  + .-++++++++.+..                    ......+..+++.+||+|++
T Consensus         4 mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~~~~D~Vil   63 (260)
T PTZ00431          4 IRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKNT--------------------PFVYLQSNEELAKTCDIIVL   63 (260)
T ss_pred             CEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhcC--------------------CeEEeCChHHHHHhCCEEEE
Confidence            5899999999999999987432  1 12588888865321                    01123466778889999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL  286 (342)
                      |+| ..++..++.+ ....++++ .+|.+.=|  +..+.+.+.+
T Consensus        64 avk-p~~~~~vl~~-i~~~l~~~-~iIS~~aG--i~~~~l~~~~  102 (260)
T PTZ00431         64 AVK-PDLAGKVLLE-IKPYLGSK-LLISICGG--LNLKTLEEMV  102 (260)
T ss_pred             EeC-HHHHHHHHHH-HHhhccCC-EEEEEeCC--ccHHHHHHHc
Confidence            988 3445555543 22344544 55665444  4456565555

>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.58  E-value=0.00032  Score=65.90  Aligned_cols=168  Identities=18%  Similarity=0.225  Sum_probs=104.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+..     +.|+++++.+  ..+++. +++..+-.  |       -+|.+--
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~~l~~~I~~lN~d~~V~GIlvqlPLP~~id~~~i~~~I~p~--K-------DVDGl~~  123 (286)
T PRK14184         54 RACEDAGIVSEAFRLPA-DTTQEELEDLIAELNARPDIDGILLQLPLPKGLDSQRCLELIDPA--K-------DVDGFHP  123 (286)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCcCceEEEecCCCCCCCHHHHHhccCcc--c-------CcccCCH
Confidence            45566788887765543 3577877765531     4689998864  344443 23222211  1       2233211


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      .   ..|-...+.++ ....++.-++.++    ++                     .+.++.||++.|||-+. +|+++|
T Consensus       124 ~---N~g~l~~~~~~-~~PcTp~av~~lL----~~---------------------~~i~l~Gk~vvViGrS~iVG~Pla  174 (286)
T PRK14184        124 E---NMGRLALGLPG-FRPCTPAGVMTLL----ER---------------------YGLSPAGKKAVVVGRSNIVGKPLA  174 (286)
T ss_pred             h---hHHHHhCCCCC-CCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHHH
Confidence            1   01111112222 3445555444322    21                     13578999999999986 599999


Q ss_pred             HHHHhc----CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHH
Q 019387          182 RMMVEG----FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (342)
Q Consensus       182 ~~l~~a----fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~  257 (342)
                      .+| ..    -+++|..+..+.                            .++.+.+++||+|+.+++    ..++|..+
T Consensus       175 ~lL-~~~~~~~~AtVt~~hs~t----------------------------~~l~~~~~~ADIVI~AvG----~p~li~~~  221 (286)
T PRK14184        175 LML-GAPGKFANATVTVCHSRT----------------------------PDLAEECREADFLFVAIG----RPRFVTAD  221 (286)
T ss_pred             HHH-hCCcccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecC----CCCcCCHH
Confidence            998 45    688988765321                            368899999999999985    35789887


Q ss_pred             HHhcCCCCcEEEEcCC
Q 019387          258 RLATMKKEAILVNCSR  273 (342)
Q Consensus       258 ~l~~mk~ga~lINvaR  273 (342)
                      .+   |+|+++||+|-
T Consensus       222 ~v---k~GavVIDVGi  234 (286)
T PRK14184        222 MV---KPGAVVVDVGI  234 (286)
T ss_pred             Hc---CCCCEEEEeee
Confidence            76   89999999983

>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.58  E-value=0.00032  Score=66.22  Aligned_cols=172  Identities=16%  Similarity=0.155  Sum_probs=104.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHHH-HHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e~-l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++|+.+.+..     +.++++++.+  ..+++.. ++.++-.  |       -+|.+.-
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIlvq~Plp~~id~~~i~~~I~p~--K-------DVDGl~~  123 (295)
T PRK14174         54 KSCKEIGMNSTVIELPA-DTTEEHLLKKIEDLNNDPDVHGILVQQPLPKQIDEFAVTLAIDPA--K-------DVDGFHP  123 (295)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------cccccCh
Confidence            44566788887766544 3477777766532     4688998854  3455442 2322211  1       2222211


Q ss_pred             hHHHhCCeeEecC-CCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387          103 NAANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (342)
Q Consensus       103 ~~~~~~gI~V~n~-~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v  180 (342)
                      .   ..|-...+. .......++.-++    .+++.                     .+.++.||++.|||-+. +|+++
T Consensus       124 ~---n~g~l~~~~~~~~~~PcTp~ail----~ll~~---------------------y~i~l~Gk~vvViGrS~iVG~Pl  175 (295)
T PRK14174        124 E---NLGRLVMGHLDKCFVSCTPYGIL----ELLGR---------------------YNIETKGKHCVVVGRSNIVGKPM  175 (295)
T ss_pred             h---hHHHHhcCCCCCCcCCCCHHHHH----HHHHH---------------------hCCCCCCCEEEEECCCCcchHHH
Confidence            0   001111111 0123444555443    22221                     13578999999999986 69999


Q ss_pred             HHHHHhc---CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHH
Q 019387          181 ARMMVEG---FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (342)
Q Consensus       181 A~~l~~a---fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~  257 (342)
                      |.+|.+.   -+++|.....+.                            .++++.+++||+|+.+++.    .++|..+
T Consensus       176 a~lL~~~~~~~~atVt~~hs~t----------------------------~~l~~~~~~ADIvI~Avg~----~~li~~~  223 (295)
T PRK14174        176 ANLMLQKLKESNCTVTICHSAT----------------------------KDIPSYTRQADILIAAIGK----ARFITAD  223 (295)
T ss_pred             HHHHHhccccCCCEEEEEeCCc----------------------------hhHHHHHHhCCEEEEecCc----cCccCHH
Confidence            9987432   478887654321                            3688899999999999963    2789998


Q ss_pred             HHhcCCCCcEEEEcCCCc
Q 019387          258 RLATMKKEAILVNCSRGP  275 (342)
Q Consensus       258 ~l~~mk~ga~lINvaRG~  275 (342)
                      .+   |+|+++||+|=-.
T Consensus       224 ~v---k~GavVIDVgi~~  238 (295)
T PRK14174        224 MV---KPGAVVIDVGINR  238 (295)
T ss_pred             Hc---CCCCEEEEeeccc
Confidence            87   8999999998443

>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.57  E-value=0.00037  Score=65.64  Aligned_cols=171  Identities=16%  Similarity=0.211  Sum_probs=105.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC----C-CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG----D-KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~----~-~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++++.+.+.    + +.++|+++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~~e~~l~~~I~~lN~d~~V~GIlvqlPLP~~i~~~~i~~~I~p~--K-------DVDGl~~  124 (294)
T PRK14187         55 RKAEMLGLRSETILLPS-TISESSLIEKINELNNDDSVHGILVQLPVPNHIDKNLIINTIDPE--K-------DVDGFHN  124 (294)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhccCcc--c-------CcccCCh
Confidence            44556788887765543 346777765553    1 4588998854  344443 33333221  1       2222211


Q ss_pred             hHHHhCCeeEecCC-CCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387          103 NAANKYGIAVGNTP-GVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (342)
Q Consensus       103 ~~~~~~gI~V~n~~-~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v  180 (342)
                      .   ..|-...+.. ......++.-++.++    +.                     .+.++.||++.|||-+. +|+++
T Consensus       125 ~---n~g~l~~g~~~~~~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvViGrS~iVGkPl  176 (294)
T PRK14187        125 E---NVGRLFTGQKKNCLIPCTPKGCLYLI----KT---------------------ITRNLSGSDAVVIGRSNIVGKPM  176 (294)
T ss_pred             h---hHHHHhCCCCCCCccCcCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHH
Confidence            0   0111111111 123455555554332    21                     13578999999999986 69999


Q ss_pred             HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       181 A~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~  260 (342)
                      |.+| ..-|+.|+.+..+                            ..++.+..++||+|+.+++.    .+++..+.  
T Consensus       177 a~lL-~~~~aTVt~chs~----------------------------T~~l~~~~~~ADIvVsAvGk----p~~i~~~~--  221 (294)
T PRK14187        177 ACLL-LGENCTVTTVHSA----------------------------TRDLADYCSKADILVAAVGI----PNFVKYSW--  221 (294)
T ss_pred             HHHH-hhCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEccCC----cCccCHHH--
Confidence            9997 6789999987542                            13688999999999999974    46788876  


Q ss_pred             cCCCCcEEEEcCCCc
Q 019387          261 TMKKEAILVNCSRGP  275 (342)
Q Consensus       261 ~mk~ga~lINvaRG~  275 (342)
                       .|+|+++||+|--.
T Consensus       222 -ik~gaiVIDVGin~  235 (294)
T PRK14187        222 -IKKGAIVIDVGINS  235 (294)
T ss_pred             -cCCCCEEEEecccc
Confidence             55999999998543

>COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism]

Probab=97.56  E-value=0.00075  Score=64.76  Aligned_cols=95  Identities=18%  Similarity=0.247  Sum_probs=69.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      -+++||||.|..++.-++.+..-|+. +|.+|+++++.. +++.    ..++.....  .+....+.++++++||+|+.|
T Consensus       130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~-e~~a----~~l~~~~~~--~v~a~~s~~~av~~aDiIvt~  202 (330)
T COG2423         130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAA-EAFA----ARLRKRGGE--AVGAADSAEEAVEGADIVVTA  202 (330)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHH-HHHH----HHHHhhcCc--cceeccCHHHHhhcCCEEEEe
Confidence            35899999999999999987656776 788999998653 2222    222222221  233467899999999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .|.++   -++..+.   +|||+.+..+|
T Consensus       203 T~s~~---Pil~~~~---l~~G~hI~aiG  225 (330)
T COG2423         203 TPSTE---PVLKAEW---LKPGTHINAIG  225 (330)
T ss_pred             cCCCC---CeecHhh---cCCCcEEEecC
Confidence            98654   6777765   55999999998

>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)

Probab=97.56  E-value=0.00039  Score=65.61  Aligned_cols=171  Identities=15%  Similarity=0.197  Sum_probs=105.4

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+..     +.++|+++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        62 k~a~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvq~PlP~~id~~~i~~~I~p~--K-------DVDGl~~  131 (299)
T PLN02516         62 KACAEVGIKSFDVDLPE-NISEAELISKVHELNANPDVHGILVQLPLPKHINEEKILNEISLE--K-------DVDGFHP  131 (299)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEecCCCCCcCHHHHHhccCcc--c-------ccCccCH
Confidence            44556787877665543 3477888766532     4679998854  244443 23222211  1       2222211


Q ss_pred             hHHHhCCeeEecC-CCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387          103 NAANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (342)
Q Consensus       103 ~~~~~~gI~V~n~-~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v  180 (342)
                      ..   .|-..... .......++.-++.++    ++                     .+.++.||++.|||-+. +|+++
T Consensus       132 ~n---~g~l~~~~~~~~~~PcTp~avi~lL----~~---------------------~~i~l~Gk~vvVIGRS~iVGkPl  183 (299)
T PLN02516        132 LN---IGKLAMKGREPLFLPCTPKGCLELL----SR---------------------SGIPIKGKKAVVVGRSNIVGLPV  183 (299)
T ss_pred             hh---HhhHhcCCCCCCCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCccchHHH
Confidence            00   11111110 1123455555544332    21                     13578999999999986 59999


Q ss_pred             HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       181 A~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~  260 (342)
                      |.+| ..-|+.|+.+...                            ..++++..++||+|+.++.-    .++|..+.  
T Consensus       184 a~lL-~~~~ATVtvchs~----------------------------T~nl~~~~~~ADIvv~AvGk----~~~i~~~~--  228 (299)
T PLN02516        184 SLLL-LKADATVTVVHSR----------------------------TPDPESIVREADIVIAAAGQ----AMMIKGDW--  228 (299)
T ss_pred             HHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEcCCC----cCccCHHH--
Confidence            9998 5679999987532                            13688999999999999864    37888765  


Q ss_pred             cCCCCcEEEEcCCCc
Q 019387          261 TMKKEAILVNCSRGP  275 (342)
Q Consensus       261 ~mk~ga~lINvaRG~  275 (342)
                       .|+|+++||+|--.
T Consensus       229 -vk~gavVIDvGin~  242 (299)
T PLN02516        229 -IKPGAAVIDVGTNA  242 (299)
T ss_pred             -cCCCCEEEEeeccc
Confidence             56999999998543

>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.55  E-value=0.00039  Score=65.13  Aligned_cols=169  Identities=12%  Similarity=0.190  Sum_probs=104.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+..     +.++++++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        54 k~~~~~Gi~~~~~~l~~-~~~~~el~~~I~~lN~D~~V~GIivq~PlP~~i~~~~i~~~I~p~--K-------DVDGl~~  123 (282)
T PRK14180         54 KACAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--K-------DVDGFHP  123 (282)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhhcCcc--c-------cccccCh
Confidence            44556788887765543 3467777665532     4678998864  244443 33333221  1       2222210


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      .   ..|-...+........+++-++.++=    +                     .+.++.||++.|||-+. +|+++|
T Consensus       124 ~---n~g~l~~g~~~~~~PcTp~aii~lL~----~---------------------y~i~l~Gk~vvViGrS~~VGkPla  175 (282)
T PRK14180        124 T---NVGRLQLRDKKCLESCTPKGIMTMLR----E---------------------YGIKTEGAYAVVVGASNVVGKPVS  175 (282)
T ss_pred             h---hHHHHhcCCCCCcCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence            0   01111111111234455655553331    1                     13578999999999985 699999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..-|+.|..+..+.                            .++.+..++||+|+.+++-    .++|..+.   
T Consensus       176 ~lL-~~~~ATVt~chs~T----------------------------~dl~~~~k~ADIvIsAvGk----p~~i~~~~---  219 (282)
T PRK14180        176 QLL-LNAKATVTTCHRFT----------------------------TDLKSHTTKADILIVAVGK----PNFITADM---  219 (282)
T ss_pred             HHH-HHCCCEEEEEcCCC----------------------------CCHHHHhhhcCEEEEccCC----cCcCCHHH---
Confidence            998 56799998875321                            4788889999999999974    46788765   


Q ss_pred             CCCCcEEEEcCC
Q 019387          262 MKKEAILVNCSR  273 (342)
Q Consensus       262 mk~ga~lINvaR  273 (342)
                      .|+|+++||+|-
T Consensus       220 vk~gavVIDvGi  231 (282)
T PRK14180        220 VKEGAVVIDVGI  231 (282)
T ss_pred             cCCCcEEEEecc
Confidence            569999999984

>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]

Probab=97.54  E-value=0.0002  Score=67.01  Aligned_cols=91  Identities=25%  Similarity=0.295  Sum_probs=64.8

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      -|.||+|+|||||+=|++=|..| +.-|.+|++--+......++..        .     .++ ...+.+|+.++||+|.
T Consensus        15 ~LkgK~iaIIGYGsQG~ahalNL-RDSGlnViiGlr~g~~s~~kA~--------~-----dGf-~V~~v~ea~k~ADvim   79 (338)
T COG0059          15 LLKGKKVAIIGYGSQGHAQALNL-RDSGLNVIIGLRKGSSSWKKAK--------E-----DGF-KVYTVEEAAKRADVVM   79 (338)
T ss_pred             HhcCCeEEEEecChHHHHHHhhh-hhcCCcEEEEecCCchhHHHHH--------h-----cCC-EeecHHHHhhcCCEEE
Confidence            58999999999999999999998 7889998764443332111111        1     112 3468999999999999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEE
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAIL  268 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~l  268 (342)
                      +.+|.. .-..++.++.-..||+|+.|
T Consensus        80 ~L~PDe-~q~~vy~~~I~p~Lk~G~aL  105 (338)
T COG0059          80 ILLPDE-QQKEVYEKEIAPNLKEGAAL  105 (338)
T ss_pred             EeCchh-hHHHHHHHHhhhhhcCCceE
Confidence            999953 33455555666678888744

>TIGR02992 ectoine_eutC ectoine utilization protein EutC

Probab=97.54  E-value=0.00064  Score=65.34  Aligned_cols=95  Identities=12%  Similarity=0.097  Sum_probs=66.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .++++|+|.|.+|+..++.|+..++. +|.+|++++++ .+.+.+.+.    ..  .+..+....++++.+.+||+|+.|
T Consensus       129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~-a~~~a~~~~----~~--~g~~v~~~~~~~~av~~aDiVvta  201 (326)
T TIGR02992       129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAK-AEALALQLS----SL--LGIDVTAATDPRAAMSGADIIVTT  201 (326)
T ss_pred             CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHH-HHHHHHHHH----hh--cCceEEEeCCHHHHhccCCEEEEe
Confidence            57999999999999999987434674 68899998754 333332221    10  011223357899999999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .|.   +.-+|..+.   +|+|+.+..++
T Consensus       202 T~s---~~p~i~~~~---l~~g~~i~~vg  224 (326)
T TIGR02992       202 TPS---ETPILHAEW---LEPGQHVTAMG  224 (326)
T ss_pred             cCC---CCcEecHHH---cCCCcEEEeeC
Confidence            885   335676654   68999888776

Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).

>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+))

Probab=97.53  E-value=0.00032  Score=67.81  Aligned_cols=107  Identities=19%  Similarity=0.315  Sum_probs=66.1

Q ss_pred             eEEEEecCHHHHHHHHHHHh-c------CCcEEEEEcCCc---hhHHHHHHhhhhhhhhcc----C-CCCccccccCCHH
Q 019387          167 TVGVIGAGRIGSAYARMMVE-G------FKMNLIYYDLYQ---ATRLEKFVTAYGQFLKAN----G-EQPVTWKRASSMD  231 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~-a------fg~~V~~~d~~~---~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~l~  231 (342)
                      +|+|||.|+.|.++|..|+. +      |+.+|..|.+..   .......   ........    + ..+.......+++
T Consensus         1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~---in~~~~n~~ylpgi~Lp~~i~at~dl~   77 (342)
T TIGR03376         1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEI---INTTHENVKYLPGIKLPANLVAVPDLV   77 (342)
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHH---HHhcCCCccccCCCcCCCCeEEECCHH
Confidence            58999999999999998864 3      448999997732   1111111   11000000    0 0011222346899


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       232 ~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd  278 (342)
                      ++++.||+|++++|. ...+.++ ...-..++++..+|+++-|=-.+
T Consensus        78 eal~~ADiIIlAVPs-~~i~~vl-~~l~~~l~~~~~iVs~tKGie~~  122 (342)
T TIGR03376        78 EAAKGADILVFVIPH-QFLEGIC-KQLKGHVKPNARAISCIKGLEVS  122 (342)
T ss_pred             HHHhcCCEEEEECCh-HHHHHHH-HHHHhhcCCCCEEEEEeCCcccC
Confidence            999999999999994 2333333 33334567889999998884443

Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.

>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.52  E-value=0.00049  Score=64.50  Aligned_cols=169  Identities=16%  Similarity=0.232  Sum_probs=105.6

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccC
Q 019387           30 INLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVD  101 (342)
Q Consensus        30 ~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id  101 (342)
                      .+..++.|.+++....++ ..+++|+.+.+.     ++.|+++++.+  ..+++. +++.++-.  |       -+|.+-
T Consensus        55 ~k~~~~~Gi~~~~~~l~~-~~s~~el~~~I~~lN~D~~V~GIlvqlPLp~~i~~~~i~~~I~p~--K-------DVDGl~  124 (284)
T PRK14177         55 VKACHKVGMGSEMIRLKE-QTTTEELLGVIDKLNLDPNVDGILLQHPVPSQIDERAAFDRIALE--K-------DVDGVT  124 (284)
T ss_pred             HHHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCeEEEcCCCCCCCCHHHHHhccCcc--c-------ccccCC
Confidence            344566788887765543 347777766553     24689998864  234433 33332211  1       222221


Q ss_pred             hhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387          102 VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (342)
Q Consensus       102 ~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v  180 (342)
                      -.   ..|-...+.+ .....++.-++.++    +.                     .+.++.||++.|||-+. +|+++
T Consensus       125 ~~---n~g~l~~g~~-~~~PcTp~avi~ll----~~---------------------y~i~l~Gk~vvViGrS~iVGkPl  175 (284)
T PRK14177        125 TL---SFGKLSMGVE-TYLPCTPYGMVLLL----KE---------------------YGIDVTGKNAVVVGRSPILGKPM  175 (284)
T ss_pred             hh---hHHHHHcCCC-CCCCCCHHHHHHHH----HH---------------------hCCCCCCCEEEEECCCCcchHHH
Confidence            10   1111112222 23445565555432    11                     13578999999999985 69999


Q ss_pred             HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       181 A~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~  260 (342)
                      |.+| ..-|+.|+.++.+                            ..++.+..++||+|+.+++-    .++|..+.  
T Consensus       176 a~lL-~~~~atVt~chs~----------------------------T~~l~~~~~~ADIvIsAvGk----~~~i~~~~--  220 (284)
T PRK14177        176 AMLL-TEMNATVTLCHSK----------------------------TQNLPSIVRQADIIVGAVGK----PEFIKADW--  220 (284)
T ss_pred             HHHH-HHCCCEEEEeCCC----------------------------CCCHHHHHhhCCEEEEeCCC----cCccCHHH--
Confidence            9998 5779999987642                            14788899999999999874    46788765  


Q ss_pred             cCCCCcEEEEcCC
Q 019387          261 TMKKEAILVNCSR  273 (342)
Q Consensus       261 ~mk~ga~lINvaR  273 (342)
                       .|+|+++||+|-
T Consensus       221 -ik~gavVIDvGi  232 (284)
T PRK14177        221 -ISEGAVLLDAGY  232 (284)
T ss_pred             -cCCCCEEEEecC
Confidence             569999999984

>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1

Probab=97.51  E-value=0.0013  Score=60.00  Aligned_cols=117  Identities=21%  Similarity=0.309  Sum_probs=70.9

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCC---------chhHHHHHHhhhhhhhhccCCCCccccccCCH
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~-d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .++.|++|.|.|+|++|+.+|+.| ..+|++|++. |..         ....+.......+...   .....  .. .+.
T Consensus        27 ~~l~~~~v~I~G~G~VG~~~a~~L-~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~---~~~~~--~~-~~~   99 (227)
T cd01076          27 IGLAGARVAIQGFGNVGSHAARFL-HEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVL---GFPGA--ER-ITN   99 (227)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcc---cCCCc--ee-cCC
Confidence            468899999999999999999998 6899999954 431         1112221111111100   00000  00 111


Q ss_pred             HHH-hhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          231 DEV-LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       231 ~~l-l~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +++ -.+||+++-|.+     .+.|+.+...+++ =.+++--+-+++ . ..-.+.|++..+.
T Consensus       100 ~~i~~~~~Dvlip~a~-----~~~i~~~~~~~l~-a~~I~egAN~~~-t-~~a~~~L~~rGi~  154 (227)
T cd01076         100 EELLELDCDILIPAAL-----ENQITADNADRIK-AKIIVEAANGPT-T-PEADEILHERGVL  154 (227)
T ss_pred             ccceeecccEEEecCc-----cCccCHHHHhhce-eeEEEeCCCCCC-C-HHHHHHHHHCCCE
Confidence            222 236899998875     4678888888887 336666667776 4 4456777776554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids

>TIGR01915 npdG NADPH-dependent F420 reductase

Probab=97.50  E-value=0.00063  Score=61.52  Aligned_cols=103  Identities=15%  Similarity=0.137  Sum_probs=61.8

Q ss_pred             eEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|+||| .|+||+.+|+.|+ ..|.+|.+++++++.. +.....+.......+. .... ...+..+.++++|+|++++|
T Consensus         2 kI~IIGG~G~mG~ala~~L~-~~G~~V~v~~r~~~~~-~~l~~~~~~~~~~~g~-~~~~-~~~~~~ea~~~aDvVilavp   77 (219)
T TIGR01915         2 KIAVLGGTGDQGKGLALRLA-KAGNKIIIGSRDLEKA-EEAAAKALEELGHGGS-DIKV-TGADNAEAAKRADVVILAVP   77 (219)
T ss_pred             EEEEEcCCCHHHHHHHHHHH-hCCCEEEEEEcCHHHH-HHHHHHHHhhccccCC-CceE-EEeChHHHHhcCCEEEEECC
Confidence            699997 9999999999984 6688999999876542 2221111000000010 0001 12356788899999999999


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      .. ....++. +.-..++ +.++|++.-|--
T Consensus        78 ~~-~~~~~l~-~l~~~l~-~~vvI~~~ngi~  105 (219)
T TIGR01915        78 WD-HVLKTLE-SLRDELS-GKLVISPVVPLA  105 (219)
T ss_pred             HH-HHHHHHH-HHHHhcc-CCEEEEeccCce
Confidence            53 3333332 2212333 579999876643

This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.

>PRK06407 ornithine cyclodeaminase; Provisional

Probab=97.49  E-value=0.00076  Score=64.13  Aligned_cols=95  Identities=15%  Similarity=0.181  Sum_probs=66.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      -+++||+|.|..|+.-++.++.-++. +|.+|++++++. +++.+.+.    ..  .+..+....+.++++.+||+|+.+
T Consensus       117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a-~~f~~~~~----~~--~~~~v~~~~~~~eav~~aDIV~ta  189 (301)
T PRK06407        117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHA-RAFAERFS----KE--FGVDIRPVDNAEAALRDADTITSI  189 (301)
T ss_pred             CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHH-HHHHHHHH----Hh--cCCcEEEeCCHHHHHhcCCEEEEe
Confidence            46999999999999999887544555 789999997643 33333221    11  012233457899999999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .|.   +.-+|..+   .+|||+.+.-+|
T Consensus       190 T~s---~~P~~~~~---~l~pg~hV~aiG  212 (301)
T PRK06407        190 TNS---DTPIFNRK---YLGDEYHVNLAG  212 (301)
T ss_pred             cCC---CCcEecHH---HcCCCceEEecC
Confidence            874   45777766   457887776665

>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional

Probab=97.47  E-value=0.00063  Score=63.85  Aligned_cols=171  Identities=20%  Similarity=0.222  Sum_probs=106.3

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhCC-----CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIGD-----KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~-----~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+++....++ ..+++|+.+.+..     +.++++++.+  ..+++. +++.++-.  |       -+|.+--
T Consensus        55 k~a~~~Gi~~~~~~l~~-~~t~~el~~~I~~lN~D~~V~GIlvqlPlP~~id~~~i~~~I~p~--K-------DVDGl~~  124 (284)
T PRK14193         55 RDCAEVGITSIRRDLPA-DATQEELNAVIDELNADPACTGYIVQLPLPKHLDENAVLERIDPA--K-------DADGLHP  124 (284)
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEeCCCCCCCCHHHHHhcCCcc--c-------CccCCCh
Confidence            44556788877665543 3577888766532     4689998864  344443 33333221  1       2222210


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      .   ..|-...+.++ ....++.-++.++-    .                     .+.++.||++.|||-+. +|+++|
T Consensus       125 ~---n~g~l~~~~~~-~~PcTp~av~~ll~----~---------------------~~i~l~Gk~vvViGrS~~VGkPla  175 (284)
T PRK14193        125 T---NLGRLVLNEPA-PLPCTPRGIVHLLR----R---------------------YDVELAGAHVVVIGRGVTVGRPIG  175 (284)
T ss_pred             h---hhhHHhCCCCC-CCCCCHHHHHHHHH----H---------------------hCCCCCCCEEEEECCCCcchHHHH
Confidence            0   11111122222 34455555554331    1                     13578999999999875 699999


Q ss_pred             HHHHhc-CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387          182 RMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       182 ~~l~~a-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~  260 (342)
                      .+|.+. -++.|..+...                            ..++.+..++||+|+.++.-    .++|..+.  
T Consensus       176 ~lL~~~~~~atVtvchs~----------------------------T~~l~~~~k~ADIvV~AvGk----p~~i~~~~--  221 (284)
T PRK14193        176 LLLTRRSENATVTLCHTG----------------------------TRDLAAHTRRADIIVAAAGV----AHLVTADM--  221 (284)
T ss_pred             HHHhhccCCCEEEEeCCC----------------------------CCCHHHHHHhCCEEEEecCC----cCccCHHH--
Confidence            998421 68999877532                            14788999999999999874    36888865  


Q ss_pred             cCCCCcEEEEcCCCc
Q 019387          261 TMKKEAILVNCSRGP  275 (342)
Q Consensus       261 ~mk~ga~lINvaRG~  275 (342)
                       .|+|+++||+|--.
T Consensus       222 -ik~GavVIDvGin~  235 (284)
T PRK14193        222 -VKPGAAVLDVGVSR  235 (284)
T ss_pred             -cCCCCEEEEccccc
Confidence             56999999998654

>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2

Probab=97.45  E-value=0.00052  Score=61.37  Aligned_cols=111  Identities=16%  Similarity=0.240  Sum_probs=71.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC---chhHHHH-H---------Hhhhhhhhhc-cCCCCccc-
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY---QATRLEK-F---------VTAYGQFLKA-NGEQPVTW-  224 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~---~~~~~~~-~---------~~~~~~~~~~-~~~~~~~~-  224 (342)
                      ..|..++|+|+|.|.+|..+|..|+ ..|. +++.+|+.   .+..... +         .+.....+.. ........ 
T Consensus        17 ~~L~~~~V~IvG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~   95 (200)
T TIGR02354        17 QKLEQATVAICGLGGLGSNVAINLA-RAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAY   95 (200)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEe
Confidence            4688999999999999999999985 5688 68899887   2210000 0         0000000000 00000000 


Q ss_pred             ---cccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          225 ---KRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       225 ---~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                         ....++++++.++|+|+.| ..+++++.++.......+++..++...+-
T Consensus        96 ~~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~~g~  146 (200)
T TIGR02354        96 DEKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAASGL  146 (200)
T ss_pred             eeeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEEecc
Confidence               0123566788999999999 47889999999998898887776765433

Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.

>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]

Probab=97.42  E-value=0.00051  Score=63.94  Aligned_cols=211  Identities=17%  Similarity=0.176  Sum_probs=127.7

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|...+....++ ..+++|+.+.+.     .+.++|+++.+  ..+++. +++...-         .--+|.+--
T Consensus        53 k~~~~iGi~~~~~~l~~-~~t~~eLl~~I~~lN~D~~v~GIlVQlPLp~hld~~~il~~I~p---------~KDVDG~hp  122 (283)
T COG0190          53 KAAEEIGIASELYDLPE-DITEEELLALIDELNADPEVDGILVQLPLPKHLDEQKLLQAIDP---------EKDVDGFHP  122 (283)
T ss_pred             HHHHHcCCeeEEEeCCC-cCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhhcCc---------CCCccccCh
Confidence            44566777777666543 357788876663     25789998853  234432 3332211         112333321


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHH-HHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~I-G~~vA  181 (342)
                         ..-|-...+ +...-..++..++    .+++.+                     +.+|+||++.|||-++| |+++|
T Consensus       123 ---~N~g~L~~~-~~~~~PCTp~gi~----~ll~~~---------------------~i~l~Gk~~vVVGrS~iVGkPla  173 (283)
T COG0190         123 ---YNLGKLAQG-EPGFLPCTPAGIM----TLLEEY---------------------GIDLRGKNVVVVGRSNIVGKPLA  173 (283)
T ss_pred             ---hHhcchhcC-CCCCCCCCHHHHH----HHHHHh---------------------CCCCCCCEEEEECCCCcCcHHHH
Confidence               112233333 3333344444443    223322                     35799999999999985 99999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      ..| ..-++.|.+...+-                            .++.+..++||+|+.++-.    .++|.++   +
T Consensus       174 ~lL-~~~naTVtvcHs~T----------------------------~~l~~~~k~ADIvv~AvG~----p~~i~~d---~  217 (283)
T COG0190         174 LLL-LNANATVTVCHSRT----------------------------KDLASITKNADIVVVAVGK----PHFIKAD---M  217 (283)
T ss_pred             HHH-HhCCCEEEEEcCCC----------------------------CCHHHHhhhCCEEEEecCC----ccccccc---c
Confidence            998 57899999875432                            4788899999999999864    4677764   4


Q ss_pred             CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCccccccccccccccccccccCchhhccccc
Q 019387          262 MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKHISTQDRATSCPKLTREWPIYDNSC  335 (342)
Q Consensus       262 mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPhia~~~~~~~~~~~~~~~~~~~~~~  335 (342)
                      .|+|+++|++|--.+-+          +++.|   ||-..+.  -.-.+||--+|      ..+||-.|-++|...
T Consensus       218 vk~gavVIDVGinrv~~----------~kl~G---DVdf~~v~~~a~~iTPVPGG------VGPmTvamLl~Nt~~  274 (283)
T COG0190         218 VKPGAVVIDVGINRVND----------GKLVG---DVDFDSVKEKASAITPVPGG------VGPMTVAMLLENTLK  274 (283)
T ss_pred             ccCCCEEEecCCccccC----------CceEe---eccHHHHHHhhcccCCCCCc------cCHHHHHHHHHHHHH
Confidence            67999999998544333          45543   6655543  23345555333      346666666666543

>PRK06199 ornithine cyclodeaminase; Validated

Probab=97.42  E-value=0.00088  Score=65.70  Aligned_cols=101  Identities=20%  Similarity=0.290  Sum_probs=69.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~  241 (342)
                      -+++||+|.|..|+.-++.++.-+.  -+|.+|++++++ .+++.+.+.    ... ... .+....+.++++++||+|+
T Consensus       155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~-a~~f~~~~~----~~~-~~~~~v~~~~s~~eav~~ADIVv  228 (379)
T PRK06199        155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKS-LDSFATWVA----ETY-PQITNVEVVDSIEEVVRGSDIVT  228 (379)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHH-HHHHHHHHH----Hhc-CCCceEEEeCCHHHHHcCCCEEE
Confidence            4689999999999999988754453  389999999854 333333221    110 011 1334578999999999999


Q ss_pred             EcCCCCc---ccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          242 LHPVLDK---TTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       242 l~~pl~~---~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      .|.+.+.   .+.-+|..+   ++|+|+.++.++.-
T Consensus       229 taT~s~~~~~s~~Pv~~~~---~lkpG~hv~~ig~~  261 (379)
T PRK06199        229 YCNSGETGDPSTYPYVKRE---WVKPGAFLLMPAAC  261 (379)
T ss_pred             EccCCCCCCCCcCcEecHH---HcCCCcEEecCCcc
Confidence            9987543   345777765   46799988877653

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=97.42  E-value=0.0013  Score=61.96  Aligned_cols=129  Identities=15%  Similarity=0.118  Sum_probs=75.0

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|+|+|.|+||..+|..|+ .-|.+|..++++++. .+..... +... ..+..........+.+++ ..+|+|++++|.
T Consensus         2 ~I~IiG~G~~G~~~a~~L~-~~g~~V~~~~r~~~~-~~~~~~~-g~~~-~~~~~~~~~~~~~~~~~~-~~~d~vila~k~   76 (304)
T PRK06522          2 KIAILGAGAIGGLFGAALA-QAGHDVTLVARRGAH-LDALNEN-GLRL-EDGEITVPVLAADDPAEL-GPQDLVILAVKA   76 (304)
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCCeEEEEECChHH-HHHHHHc-CCcc-cCCceeecccCCCChhHc-CCCCEEEEeccc
Confidence            6999999999999999985 568999999986543 2221110 0001 011100011123456665 899999999984


Q ss_pred             CcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE--EecCCCCC
Q 019387          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG--LDVFEVTE  303 (342)
Q Consensus       247 ~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aa--LDV~~~EP  303 (342)
                       .++..++. .....+.+++.+|...-| +-.++.+.+.+....+.++.  ..++-.+|
T Consensus        77 -~~~~~~~~-~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~~~~~~~~~~~~p  132 (304)
T PRK06522         77 -YQLPAALP-SLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLGGVVTHAAELEGP  132 (304)
T ss_pred             -ccHHHHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEEEEEEEeeEecCC
Confidence             34433332 233445677888887776 33355666666555554332  23344455

>PRK13940 glutamyl-tRNA reductase; Provisional

Probab=97.42  E-value=0.0019  Score=64.15  Aligned_cols=101  Identities=16%  Similarity=0.271  Sum_probs=68.1

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|+++.|+|.|.||+.+++.| ...|+ ++++++|+... .+.+...++       .  ......+++.+.+.++|+|
T Consensus       178 ~l~~kkvlviGaG~~a~~va~~L-~~~g~~~I~V~nRt~~r-a~~La~~~~-------~--~~~~~~~~l~~~l~~aDiV  246 (414)
T PRK13940        178 NISSKNVLIIGAGQTGELLFRHV-TALAPKQIMLANRTIEK-AQKITSAFR-------N--ASAHYLSELPQLIKKADII  246 (414)
T ss_pred             CccCCEEEEEcCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHhc-------C--CeEecHHHHHHHhccCCEE
Confidence            46789999999999999999998 56785 79999998643 233322221       0  0112235677889999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd  278 (342)
                      +.|.+.   .+.+|..+...  .+.-++||.+=..-||
T Consensus       247 I~aT~a---~~~vi~~~~~~--~~~~~~iDLavPRdid  279 (414)
T PRK13940        247 IAAVNV---LEYIVTCKYVG--DKPRVFIDISIPQALD  279 (414)
T ss_pred             EECcCC---CCeeECHHHhC--CCCeEEEEeCCCCCCC
Confidence            999874   34566666543  2345788877543333

>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.41  E-value=0.00065  Score=66.23  Aligned_cols=111  Identities=19%  Similarity=0.239  Sum_probs=66.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhc------CCcEEEEEcCCchh----HHHHHHhh-hhhhhhccCCCCccccccCCHHHHh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEG------FKMNLIYYDLYQAT----RLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~a------fg~~V~~~d~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ll  234 (342)
                      .+|+|||.|+.|.++|..|+..      ||-+|..|.+.+..    ..+..... -...+...-.-+......+++++++
T Consensus        12 ~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav   91 (365)
T PTZ00345         12 LKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAV   91 (365)
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHH
Confidence            5899999999999999998643      45788888776531    11111100 0000000001122233456889999


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHh--cCCCCcEEEEcCCCcccC
Q 019387          235 READVISLHPVLDKTTYHLINKERLA--TMKKEAILVNCSRGPVID  278 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~--~mk~ga~lINvaRG~~vd  278 (342)
                      +.||+|++++|. ...+.++.+ .-.  .+++++.+|+++-|=-.+
T Consensus        92 ~~aDiIvlAVPs-q~l~~vl~~-l~~~~~l~~~~~iIS~aKGIe~~  135 (365)
T PTZ00345         92 EDADLLIFVIPH-QFLESVLSQ-IKENNNLKKHARAISLTKGIIVE  135 (365)
T ss_pred             hcCCEEEEEcCh-HHHHHHHHH-hccccccCCCCEEEEEeCCcccC
Confidence            999999999994 233333322 212  456688999998775443

>PRK08291 ectoine utilization protein EutC; Validated

Probab=97.40  E-value=0.00097  Score=64.22  Aligned_cols=94  Identities=15%  Similarity=0.137  Sum_probs=63.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .++++|+|.|.+|+..+..++...+ -+|.+|++++++ .+.+.+.+.    ..  ....+....++++++.+||+|+++
T Consensus       132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~-a~~l~~~~~----~~--~g~~v~~~~d~~~al~~aDiVi~a  204 (330)
T PRK08291        132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAK-AEAYAADLR----AE--LGIPVTVARDVHEAVAGADIIVTT  204 (330)
T ss_pred             CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHH-HHHHHHHHh----hc--cCceEEEeCCHHHHHccCCEEEEe
Confidence            5799999999999998887643455 478999998753 333332221    10  012223357899999999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINv  271 (342)
                      .|..   .-+|..+.   +++|+.+.-+
T Consensus       205 T~s~---~p~i~~~~---l~~g~~v~~v  226 (330)
T PRK08291        205 TPSE---EPILKAEW---LHPGLHVTAM  226 (330)
T ss_pred             eCCC---CcEecHHH---cCCCceEEee
Confidence            8853   45666644   5688766654

>TIGR00507 aroE shikimate 5-dehydrogenase

Probab=97.39  E-value=0.0012  Score=61.66  Aligned_cols=111  Identities=22%  Similarity=0.212  Sum_probs=71.1

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH-HhhcCCEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~aDiV~  241 (342)
                      ..+++++|+|.|.+|++++..| ...|++|.+++++.++ .+.+.+.+.    ..+.  .   ...++++ .+.++|+|+
T Consensus       115 ~~~k~vliiGaGg~g~aia~~L-~~~g~~v~v~~R~~~~-~~~la~~~~----~~~~--~---~~~~~~~~~~~~~DivI  183 (270)
T TIGR00507       115 RPNQRVLIIGAGGAARAVALPL-LKADCNVIIANRTVSK-AEELAERFQ----RYGE--I---QAFSMDELPLHRVDLII  183 (270)
T ss_pred             ccCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHH-HHHHHHHHh----hcCc--e---EEechhhhcccCccEEE
Confidence            4588999999999999999998 4678999999988643 222222211    1110  0   1123333 235799999


Q ss_pred             EcCCCC--cccc-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          242 LHPVLD--KTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       242 l~~pl~--~~t~-~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      .|+|..  ++.. -.++   ++.++++.+++|+.-.+...  .|.++.++.
T Consensus       184 natp~gm~~~~~~~~~~---~~~l~~~~~v~D~~y~p~~T--~ll~~A~~~  229 (270)
T TIGR00507       184 NATSAGMSGNIDEPPVP---AEKLKEGMVVYDMVYNPGET--PFLAEAKSL  229 (270)
T ss_pred             ECCCCCCCCCCCCCCCC---HHHcCCCCEEEEeccCCCCC--HHHHHHHHC
Confidence            999974  2211 1232   35578999999998776543  466665544

This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.

>PRK07589 ornithine cyclodeaminase; Validated

Probab=97.37  E-value=0.00095  Score=64.64  Aligned_cols=96  Identities=16%  Similarity=0.210  Sum_probs=66.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      -++++|+|.|..|+.-++.+..-+.. +|.+|+++++. .+++.+.+    ..   ....+....+.++++++||+|+.+
T Consensus       129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~-a~~~~~~~----~~---~~~~v~~~~~~~~av~~ADIIvta  200 (346)
T PRK07589        129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAA-TAKLARNL----AG---PGLRIVACRSVAEAVEGADIITTV  200 (346)
T ss_pred             CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHH-HHHHHHHH----Hh---cCCcEEEeCCHHHHHhcCCEEEEe
Confidence            36899999999999998876555655 78899998764 33333322    11   112233457899999999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .|.+ +..-+|..+   .+|+|+.+.-+|
T Consensus       201 T~S~-~~~Pvl~~~---~lkpG~hV~aIG  225 (346)
T PRK07589        201 TADK-TNATILTDD---MVEPGMHINAVG  225 (346)
T ss_pred             cCCC-CCCceecHH---HcCCCcEEEecC
Confidence            8732 223556664   568999877765

>PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional

Probab=97.37  E-value=0.00062  Score=65.85  Aligned_cols=100  Identities=17%  Similarity=0.191  Sum_probs=68.3

Q ss_pred             HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCH
Q 019387          177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK  256 (342)
Q Consensus       177 G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~  256 (342)
                      |..+|..|+ .-|.+|++||+++....+...+.    +...+     .....+..+++.+||+|++|+|....++.++ .
T Consensus        32 G~~MA~~La-~aG~~V~v~Dr~~~~l~~~~~~~----l~~~G-----i~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~  100 (342)
T PRK12557         32 GSRMAIEFA-EAGHDVVLAEPNRSILSEELWKK----VEDAG-----VKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-K  100 (342)
T ss_pred             HHHHHHHHH-hCCCeEEEEECCHHHhhHHHHHH----HHHCC-----CEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-H
Confidence            678898874 56899999999875321111111    11112     2234577888999999999999654467776 4


Q ss_pred             HHHhcCCCCcEEEEcCCCcccCH-HHHHHHHH
Q 019387          257 ERLATMKKEAILVNCSRGPVIDE-VALVEHLK  287 (342)
Q Consensus       257 ~~l~~mk~ga~lINvaRG~~vd~-~aL~~aL~  287 (342)
                      .....+++|+++||++.+..... +.+.+.+.
T Consensus       101 ~L~~~L~~g~IVId~ST~~~~~~s~~l~~~l~  132 (342)
T PRK12557        101 NILPHLPENAVICNTCTVSPVVLYYSLEGELR  132 (342)
T ss_pred             HHHhhCCCCCEEEEecCCCHHHHHHHHHHHhc
Confidence            67778899999999998876554 55556653

>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]

Probab=97.37  E-value=0.00072  Score=60.80  Aligned_cols=96  Identities=22%  Similarity=0.339  Sum_probs=61.1

Q ss_pred             eEEEEecCHHHHHHHHHHHhc-CCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          167 TVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~a-fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      +|||||+|.||+.+.+.+..+ .+++ +.+||+..++..+. ..            ........++++++++.|+++=|.
T Consensus         2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~-~~------------~~~~~~~s~ide~~~~~DlvVEaA   68 (255)
T COG1712           2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKEL-EA------------SVGRRCVSDIDELIAEVDLVVEAA   68 (255)
T ss_pred             eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHH-Hh------------hcCCCccccHHHHhhccceeeeeC
Confidence            799999999999999987322 3454 66899987653221 11            111123368899989999998776


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~  280 (342)
                      .  ++.   +-+-..+.++.|.-+|=+|-|.+.|+.
T Consensus        69 S--~~A---v~e~~~~~L~~g~d~iV~SVGALad~~   99 (255)
T COG1712          69 S--PEA---VREYVPKILKAGIDVIVMSVGALADEG   99 (255)
T ss_pred             C--HHH---HHHHhHHHHhcCCCEEEEechhccChH
Confidence            4  221   222234455666666666677777654

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=97.32  E-value=0.0011  Score=66.91  Aligned_cols=120  Identities=16%  Similarity=0.194  Sum_probs=76.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhh--------hhhhhhccCCCCccccccCCHHHHhhc
Q 019387          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTA--------YGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~ll~~  236 (342)
                      .+|+|+|+|.+|..+|-.|++ +.|.+|++||..++. .+.....        ...+... .. .......+++++.++.
T Consensus         2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~-v~~l~~g~~~~~e~gl~ell~~-~~-~~~l~~t~~~~~~i~~   78 (473)
T PLN02353          2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPR-IDAWNSDQLPIYEPGLDEVVKQ-CR-GKNLFFSTDVEKHVAE   78 (473)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHH-HHHHHcCCCccCCCCHHHHHHH-hh-cCCEEEEcCHHHHHhc
Confidence            479999999999999999864 357999999988754 3332211        0011000 00 0012233567788899


Q ss_pred             CCEEEEcCCCCcccc-----------cccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          237 ADVISLHPVLDKTTY-----------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       237 aDiV~l~~pl~~~t~-----------~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ||++++|+|......           .+..  +..-..+++|.++|.-|.-..=..+.+.+-|.+
T Consensus        79 advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~  143 (473)
T PLN02353         79 ADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTH  143 (473)
T ss_pred             CCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHh
Confidence            999999997432211           1221  335556789999998887776666778777765

>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.29  E-value=0.00085  Score=64.88  Aligned_cols=106  Identities=14%  Similarity=0.109  Sum_probs=64.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-hhhhhhccCC-CCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGE-QPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|+|+|.|++|..+|..|+ .-| +|..|.++++. .+..... ........+. .+.......++++.++.+|+|+++
T Consensus         8 mkI~IiGaGa~G~alA~~La-~~g-~v~l~~~~~~~-~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVila   84 (341)
T PRK12439          8 PKVVVLGGGSWGTTVASICA-RRG-PTLQWVRSAET-ADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMG   84 (341)
T ss_pred             CeEEEECCCHHHHHHHHHHH-HCC-CEEEEeCCHHH-HHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEE
Confidence            57999999999999999985 456 67777766543 2221110 0000000000 011122346788889999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      +|. ..++..+.. .-..++++..+|++.-|=-
T Consensus        85 vps-~~~~~vl~~-i~~~l~~~~~vIsl~kGi~  115 (341)
T PRK12439         85 VPS-HGFRGVLTE-LAKELRPWVPVVSLVKGLE  115 (341)
T ss_pred             eCH-HHHHHHHHH-HHhhcCCCCEEEEEEeCCc
Confidence            993 334444332 2345678888999887643

>PRK12549 shikimate 5-dehydrogenase; Reviewed

Probab=97.25  E-value=0.0029  Score=59.70  Aligned_cols=117  Identities=15%  Similarity=0.090  Sum_probs=73.0

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.++++.|+|.|.+|++++..| ...|+ +|+++|+...+ .+.+.+.+.    ... .........++.+.+.++|+|
T Consensus       124 ~~~~k~vlIlGaGGaaraia~aL-~~~G~~~I~I~nR~~~k-a~~la~~l~----~~~-~~~~~~~~~~~~~~~~~aDiV  196 (284)
T PRK12549        124 DASLERVVQLGAGGAGAAVAHAL-LTLGVERLTIFDVDPAR-AAALADELN----ARF-PAARATAGSDLAAALAAADGL  196 (284)
T ss_pred             CccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEECCCHHH-HHHHHHHHH----hhC-CCeEEEeccchHhhhCCCCEE
Confidence            35689999999999999999997 57887 79999998653 233222211    000 001111224566677899999


Q ss_pred             EEcCCCCccc--ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          241 SLHPVLDKTT--YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~~pl~~~t--~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      +.|.|..-..  .-.++.   +.++++.+++|+.-.+. ++.=|.+|-+.|
T Consensus       197 InaTp~Gm~~~~~~~~~~---~~l~~~~~v~DivY~P~-~T~ll~~A~~~G  243 (284)
T PRK12549        197 VHATPTGMAKHPGLPLPA---ELLRPGLWVADIVYFPL-ETELLRAARALG  243 (284)
T ss_pred             EECCcCCCCCCCCCCCCH---HHcCCCcEEEEeeeCCC-CCHHHHHHHHCC
Confidence            9998864211  112333   34677888888876663 344444444444

>TIGR01921 DAP-DH diaminopimelate dehydrogenase

Probab=97.25  E-value=0.00095  Score=63.83  Aligned_cols=87  Identities=16%  Similarity=0.172  Sum_probs=58.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .+|||||+|+||+.+++.+.+.=++++.+ +|+++......            .   .......+.++++.+.|+|++|.
T Consensus         4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~------------~---~~v~~~~d~~e~l~~iDVViIct   68 (324)
T TIGR01921         4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDT------------E---TPVYAVADDEKHLDDVDVLILCM   68 (324)
T ss_pred             cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhh------------c---CCccccCCHHHhccCCCEEEEcC
Confidence            58999999999999999874334789885 78875332111            0   11112346777788999999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      |...  +   -......++.|.-+|+..
T Consensus        69 Ps~t--h---~~~~~~~L~aG~NVV~s~   91 (324)
T TIGR01921        69 GSAT--D---IPEQAPYFAQFANTVDSF   91 (324)
T ss_pred             CCcc--C---HHHHHHHHHcCCCEEECC
Confidence            8532  2   234445566777777764

This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.

>TIGR00658 orni_carb_tr ornithine carbamoyltransferase

Probab=97.25  E-value=0.062  Score=51.22  Aligned_cols=106  Identities=20%  Similarity=0.206  Sum_probs=67.0

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +.|.+|+++|= +++.++.+..+ ..||++|.+..|..-...+...+....+....+   ..+....++++.++++|+|.
T Consensus       146 l~g~~v~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDvvy  221 (304)
T TIGR00658       146 LKGVKVVYVGDGNNVCNSLMLAG-AKLGMDVVVATPEGYEPDADIVKKAQEIAKENG---GSVELTHDPVEAVKGADVIY  221 (304)
T ss_pred             CCCcEEEEEeCCCchHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence            77999999997 68888888886 689999999887543221221111000011111   12334579999999999997


Q ss_pred             EcC--CCCc----------ccccccCHHHHhcCCCCcEEEEcC
Q 019387          242 LHP--VLDK----------TTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       242 l~~--pl~~----------~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .-.  ....          ....-++++.++.+|+++++.=+.
T Consensus       222 ~~~w~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl  264 (304)
T TIGR00658       222 TDVWVSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL  264 (304)
T ss_pred             EcCcccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence            643  1111          123466788888888887776653

Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.

>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.24  E-value=0.0029  Score=67.02  Aligned_cols=142  Identities=15%  Similarity=0.147  Sum_probs=92.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH---HHhhhhhhhhccCCCC-------ccccccCCHHHHhh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK---FVTAYGQFLKANGEQP-------VTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~~l~~ll~  235 (342)
                      ++|+|||.|.||..+|..++...|++|+.||++++.....   ....+...........       ......++++ .++
T Consensus       310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  388 (708)
T PRK11154        310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDYR-GFK  388 (708)
T ss_pred             cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCChH-Hhc
Confidence            6899999999999999987535699999999987532111   1111111111111110       1122335664 568


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      +||+|+=++|-+.+.+.-+-++.=+.++|+++|...+.+  +....|.+.+.. .-+.+++--|.+-+  |-+-+.||
T Consensus       389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~Hff~P~~~~~lVEvv~g  463 (708)
T PRK11154        389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSS--LPIGQIAAAAAR-PEQVIGLHYFSPVEKMPLVEVIPH  463 (708)
T ss_pred             cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhcCc-ccceEEEecCCccccCceEEEECC
Confidence            999999999988888877777777889999999866543  566778887743 44567777664333  44555555

>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=97.24  E-value=0.0014  Score=62.59  Aligned_cols=115  Identities=20%  Similarity=0.220  Sum_probs=73.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++|+|+|-|+-|.++|+.|+ .-|-+|..|.+.++...+-....-..-+......+.......+++++++.||+|++.+|
T Consensus         2 ~kI~ViGaGswGTALA~~la-~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP   80 (329)
T COG0240           2 MKIAVIGAGSWGTALAKVLA-RNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP   80 (329)
T ss_pred             ceEEEEcCChHHHHHHHHHH-hcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC
Confidence            58999999999999999985 45678888887764321111100000011122223344456789999999999999999


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHH
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALV  283 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~  283 (342)
                      . ...+..+..- -..+++++.+|+++-|=-.+.-.+.
T Consensus        81 s-~~~r~v~~~l-~~~l~~~~~iv~~sKGie~~t~~l~  116 (329)
T COG0240          81 S-QALREVLRQL-KPLLLKDAIIVSATKGLEPETGRLL  116 (329)
T ss_pred             h-HHHHHHHHHH-hhhccCCCeEEEEeccccCCCcchH
Confidence            4 2333333322 2456899999999988655444443

>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ

Probab=97.21  E-value=0.0037  Score=66.12  Aligned_cols=142  Identities=14%  Similarity=0.173  Sum_probs=91.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCCC-------ccccccCCHHHHhh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP-------VTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~l~~ll~  235 (342)
                      ++|+|||.|.||..+|..++...|++|+.||++++......   ...+...........       ......++++ .++
T Consensus       305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~  383 (699)
T TIGR02440       305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDYR-GFK  383 (699)
T ss_pred             cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCChH-Hhc
Confidence            57999999999999999874336999999999875321111   001111111111000       1122335665 578


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      +||+|+=++|-+.+.+.-+-++.=+.++++++|...+.+  +....|.++++. .-+.+++--|.+-+  |-+-+.|+
T Consensus       384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~~g~HffnP~~~~~lVEvv~g  458 (699)
T TIGR02440       384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSS--LPIGQIAAAASR-PENVIGLHYFSPVEKMPLVEVIPH  458 (699)
T ss_pred             cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHhcCC-cccEEEEecCCccccCceEEEeCC
Confidence            999999999988888887777777888999888765443  555667787743 44567777664433  44445554

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.

>PRK13301 putative L-aspartate dehydrogenase; Provisional

Probab=97.20  E-value=0.0019  Score=59.86  Aligned_cols=103  Identities=14%  Similarity=0.145  Sum_probs=64.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhc--CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH-hhcCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV-LREADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~a--fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-l~~aDiV~  241 (342)
                      .+|||||+|.||+.+++.+.++  .++++. +|++.++ +.+.+..         .     .....+++++ ....|+|+
T Consensus         3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~-~~~~~~~---------~-----~~~~~~l~~ll~~~~DlVV   67 (267)
T PRK13301          3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAAD-LPPALAG---------R-----VALLDGLPGLLAWRPDLVV   67 (267)
T ss_pred             eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHH-HHHHhhc---------c-----CcccCCHHHHhhcCCCEEE
Confidence            5899999999999999987433  236655 4666542 2222110         0     2245789997 58899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC---HHHHHHHHHc
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID---EVALVEHLKQ  288 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd---~~aL~~aL~~  288 (342)
                      =|..-     .-+-+--...++.|.-++=.|=|.+-|   ++.|.++.++
T Consensus        68 E~A~~-----~av~e~~~~iL~~g~dlvv~SvGALaD~~~~~~l~~~A~~  112 (267)
T PRK13301         68 EAAGQ-----QAIAEHAEGCLTAGLDMIICSAGALADDALRARLIAAAEA  112 (267)
T ss_pred             ECCCH-----HHHHHHHHHHHhcCCCEEEEChhHhcCHHHHHHHHHHHHh
Confidence            88762     222233334455677777778888877   3444444443

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=97.20  E-value=0.0015  Score=62.75  Aligned_cols=95  Identities=17%  Similarity=0.171  Sum_probs=58.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .|++|+|+|+|..|....+. |+++|++|+++|++.++.........+.++.        ....+.++++-..+|+++.+
T Consensus       166 pG~~V~I~G~GGlGh~avQ~-Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~--------~~~~~~~~~~~~~~d~ii~t  236 (339)
T COG1064         166 PGKWVAVVGAGGLGHMAVQY-AKAMGAEVIAITRSEEKLELAKKLGADHVIN--------SSDSDALEAVKEIADAIIDT  236 (339)
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEeCChHHHHHHHHhCCcEEEE--------cCCchhhHHhHhhCcEEEEC
Confidence            48999999999999999998 5899999999999987542221111111110        00112334444448999888


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .| ... -    ...++.+++|..++-++=
T Consensus       237 v~-~~~-~----~~~l~~l~~~G~~v~vG~  260 (339)
T COG1064         237 VG-PAT-L----EPSLKALRRGGTLVLVGL  260 (339)
T ss_pred             CC-hhh-H----HHHHHHHhcCCEEEEECC
Confidence            87 322 1    234455555555555443

>PRK00676 hemA glutamyl-tRNA reductase; Validated

Probab=97.20  E-value=0.0015  Score=62.92  Aligned_cols=97  Identities=15%  Similarity=0.095  Sum_probs=65.1

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|+++.|||.|.||+.+|+.| ...|. +|++.+|.....  .    |+.             .....-+...++|+|
T Consensus       171 ~l~~k~vLvIGaGem~~l~a~~L-~~~g~~~i~v~nRt~~~~--~----~~~-------------~~~~~~~~~~~~DvV  230 (338)
T PRK00676        171 KSKKASLLFIGYSEINRKVAYYL-QRQGYSRITFCSRQQLTL--P----YRT-------------VVREELSFQDPYDVI  230 (338)
T ss_pred             CccCCEEEEEcccHHHHHHHHHH-HHcCCCEEEEEcCCcccc--c----hhh-------------hhhhhhhcccCCCEE
Confidence            47899999999999999999998 57785 688998876320  0    100             000111345789999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCH
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      +.|...|......+..+.++..++ -+|||.+=..-||+
T Consensus       231 Is~t~~Tas~~p~i~~~~~~~~~~-r~~iDLAvPRdId~  268 (338)
T PRK00676        231 FFGSSESAYAFPHLSWESLADIPD-RIVFDFNVPRTFPW  268 (338)
T ss_pred             EEcCCcCCCCCceeeHHHHhhccC-cEEEEecCCCCCcc
Confidence            987543444556677777665443 49999886655653

>PRK12548 shikimate 5-dehydrogenase; Provisional

Probab=97.18  E-value=0.0024  Score=60.39  Aligned_cols=124  Identities=13%  Similarity=0.145  Sum_probs=70.0

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCch--hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      .+.||++.|+|-|.+|++++..| ...|++ |.+++|+.+  .+.+...+.+.............+....++++.+..+|
T Consensus       123 ~~~~k~vlI~GAGGagrAia~~L-a~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~D  201 (289)
T PRK12548        123 DVKGKKLTVIGAGGAATAIQVQC-ALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSD  201 (289)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCC
Confidence            36789999999999999999987 478986 999998762  22222222111000000000011111224455677899


Q ss_pred             EEEEcCCCCcc--cc-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          239 VISLHPVLDKT--TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       239 iV~l~~pl~~~--t~-~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      +|+.++|..-.  .. ..+.  ....++++.+++++.-.+. ++.=|.+|-+.|
T Consensus       202 ilINaTp~Gm~~~~~~~~~~--~~~~l~~~~~v~D~vY~P~-~T~ll~~A~~~G  252 (289)
T PRK12548        202 ILVNATLVGMKPNDGETNIK--DTSVFRKDLVVADTVYNPK-KTKLLEDAEAAG  252 (289)
T ss_pred             EEEEeCCCCCCCCCCCCCCC--cHHhcCCCCEEEEecCCCC-CCHHHHHHHHCC
Confidence            99999986421  11 1120  1244667778888766553 344444444444

>PRK06718 precorrin-2 dehydrogenase; Reviewed

Probab=97.18  E-value=0.0011  Score=59.49  Aligned_cols=77  Identities=16%  Similarity=0.232  Sum_probs=51.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..|.|++|.|||.|.+|...++.| ...|++|+++++............        +  ...+....-.++.+..+|+|
T Consensus         6 l~l~~k~vLVIGgG~va~~ka~~L-l~~ga~V~VIs~~~~~~l~~l~~~--------~--~i~~~~~~~~~~~l~~adlV   74 (202)
T PRK06718          6 IDLSNKRVVIVGGGKVAGRRAITL-LKYGAHIVVISPELTENLVKLVEE--------G--KIRWKQKEFEPSDIVDAFLV   74 (202)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEcCCCCHHHHHHHhC--------C--CEEEEecCCChhhcCCceEE
Confidence            468999999999999999999987 578999999988764443332110        1  01111111113456789999


Q ss_pred             EEcCCCCc
Q 019387          241 SLHPVLDK  248 (342)
Q Consensus       241 ~l~~pl~~  248 (342)
                      +.++...+
T Consensus        75 iaaT~d~e   82 (202)
T PRK06718         75 IAATNDPR   82 (202)
T ss_pred             EEcCCCHH
Confidence            98876533

>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain

Probab=97.17  E-value=0.0012  Score=59.17  Aligned_cols=94  Identities=20%  Similarity=0.286  Sum_probs=61.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCCHHHHhhcCCE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~~aDi  239 (342)
                      ..+.|++|.|||.|.+|..-++.| ..+|++|+++++...+....+.+        .+  ...+. .... .+.+.++|+
T Consensus         5 l~l~gk~vlVvGgG~va~rk~~~L-l~~ga~VtVvsp~~~~~l~~l~~--------~~--~i~~~~~~~~-~~dl~~~~l   72 (205)
T TIGR01470         5 ANLEGRAVLVVGGGDVALRKARLL-LKAGAQLRVIAEELESELTLLAE--------QG--GITWLARCFD-ADILEGAFL   72 (205)
T ss_pred             EEcCCCeEEEECcCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHH--------cC--CEEEEeCCCC-HHHhCCcEE
Confidence            358899999999999999999998 57999999999887654433221        11  11111 1112 345688999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINv  271 (342)
                      |+.+....+     +|.......+.-.++||+
T Consensus        73 Vi~at~d~~-----ln~~i~~~a~~~~ilvn~   99 (205)
T TIGR01470        73 VIAATDDEE-----LNRRVAHAARARGVPVNV   99 (205)
T ss_pred             EEECCCCHH-----HHHHHHHHHHHcCCEEEE
Confidence            888865422     234444444445566765

This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.

>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate

Probab=97.17  E-value=0.00086  Score=54.86  Aligned_cols=96  Identities=16%  Similarity=0.266  Sum_probs=53.4

Q ss_pred             eEEEEe-cCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvgIvG-~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      +||||| .|.+|+.+.++|++...+++.. +++..+. ...+...+.   ...+.....+.. .+.+ .+.++|+|++|+
T Consensus         1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~-g~~~~~~~~---~~~~~~~~~~~~-~~~~-~~~~~Dvvf~a~   74 (121)
T PF01118_consen    1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSA-GKPLSEVFP---HPKGFEDLSVED-ADPE-ELSDVDVVFLAL   74 (121)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTT-TSBHHHTTG---GGTTTEEEBEEE-TSGH-HHTTESEEEE-S
T ss_pred             CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecccc-CCeeehhcc---ccccccceeEee-cchh-HhhcCCEEEecC
Confidence            699999 9999999999997777887664 4444411 011111110   000111111111 2333 459999999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |... ++.+. ..   ..++|..+|+.+-
T Consensus        75 ~~~~-~~~~~-~~---~~~~g~~ViD~s~   98 (121)
T PF01118_consen   75 PHGA-SKELA-PK---LLKAGIKVIDLSG   98 (121)
T ss_dssp             CHHH-HHHHH-HH---HHHTTSEEEESSS
T ss_pred             chhH-HHHHH-HH---HhhCCcEEEeCCH
Confidence            8421 11111 11   1468899999874

This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....

>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed

Probab=97.15  E-value=0.0037  Score=66.31  Aligned_cols=141  Identities=16%  Similarity=0.164  Sum_probs=93.0

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCCC-------ccccccCCHHHHhh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP-------VTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~l~~ll~  235 (342)
                      ++|+|||.|.||..+|..++ ..|.+|+.||.+++......   ...+...........       .......++++ ++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~~-~~  391 (715)
T PRK11730        314 KQAAVLGAGIMGGGIAYQSA-SKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDYAG-FE  391 (715)
T ss_pred             ceEEEECCchhHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHHH-hc
Confidence            58999999999999999986 56999999999876421111   111111111111000       11223356644 68


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      +||+|+=++|-+.+.+.-+-++.=..++++++|...+.+  +....|.+++.. .-+.+++--|.+-+  |-+-+.||
T Consensus       392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~-p~r~~g~Hff~P~~~~~lVEvv~g  466 (715)
T PRK11730        392 RVDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTST--ISISLLAKALKR-PENFCGMHFFNPVHRMPLVEVIRG  466 (715)
T ss_pred             CCCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCC-CccEEEEecCCcccccceEEeeCC
Confidence            999999999988888888877777889999888765443  566778887753 44567777665444  44555555

>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=97.12  E-value=0.0069  Score=54.89  Aligned_cols=116  Identities=16%  Similarity=0.210  Sum_probs=69.1

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCc---------hhHHHHHHhhhhhhhhccCCCCccccccCCH
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .++.|++|.|.|||++|+.+|+.| ...|.+|++ .|.+.         +...+.. ......   .............+
T Consensus        19 ~~l~g~~vaIqGfGnVG~~~a~~L-~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~-~~~~~~---~~~~~~~~~~~~~l   93 (217)
T cd05211          19 DSLEGLTVAVQGLGNVGWGLAKKL-AEEGGKVLAVSDPDGYIYDPGITTEELINYA-VALGGS---ARVKVQDYFPGEAI   93 (217)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEEcCCCcEECCCCCHHHHHHHH-HhhCCc---cccCcccccCcccc
Confidence            468899999999999999999998 578887665 56544         0111111 110000   00000000001122


Q ss_pred             HHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 019387          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       231 ~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i  291 (342)
                      -+  ..||+++-|.+.     +.|+.+....++ =.+++--+-+++-+ + -.+.|++..+
T Consensus        94 ~~--~~~DVlipaA~~-----~~i~~~~a~~l~-a~~V~e~AN~p~t~-~-a~~~L~~~Gi  144 (217)
T cd05211          94 LG--LDVDIFAPCALG-----NVIDLENAKKLK-AKVVAEGANNPTTD-E-ALRILHERGI  144 (217)
T ss_pred             ee--ccccEEeecccc-----CccChhhHhhcC-ccEEEeCCCCCCCH-H-HHHHHHHCCc
Confidence            22  379999988863     488888888887 34666677777655 3 4566655543

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral

>PRK02102 ornithine carbamoyltransferase; Validated

Probab=97.09  E-value=0.062  Score=51.79  Aligned_cols=106  Identities=18%  Similarity=0.233  Sum_probs=66.6

Q ss_pred             cCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          163 LKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       163 L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      +.|++|++||-+  ++.++++..+ ..||++|.+..|..-...+...+.........+   ..+...++++++++++|+|
T Consensus       153 l~g~~va~vGd~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvv  228 (331)
T PRK02102        153 LKGLKLAYVGDGRNNMANSLMVGG-AKLGMDVRICAPKELWPEEELVALAREIAKETG---AKITITEDPEEAVKGADVI  228 (331)
T ss_pred             CCCCEEEEECCCcccHHHHHHHHH-HHcCCEEEEECCcccccCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEE
Confidence            689999999997  7888888886 589999998877543222222111101111112   1233457899999999999


Q ss_pred             EEcCCC--Cc-----c-----cccccCHHHHh-cCCCCcEEEEcC
Q 019387          241 SLHPVL--DK-----T-----TYHLINKERLA-TMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~~pl--~~-----~-----t~~li~~~~l~-~mk~ga~lINva  272 (342)
                      ..-.-.  ..     +     ...-++++.++ .+|++++|.=+.
T Consensus       229 yt~~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l  273 (331)
T PRK02102        229 YTDVWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL  273 (331)
T ss_pred             EEcCcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence            774311  00     1     23445777777 478887776553

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=97.09  E-value=0.00043  Score=55.12  Aligned_cols=88  Identities=23%  Similarity=0.215  Sum_probs=57.2

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .+.|++|.|||.|.+|..-++.| ...|++|+++++.. ...+.             .  ..+. ...+++.+.++|+|+
T Consensus         4 ~l~~~~vlVvGgG~va~~k~~~L-l~~gA~v~vis~~~-~~~~~-------------~--i~~~-~~~~~~~l~~~~lV~   65 (103)
T PF13241_consen    4 DLKGKRVLVVGGGPVAARKARLL-LEAGAKVTVISPEI-EFSEG-------------L--IQLI-RREFEEDLDGADLVF   65 (103)
T ss_dssp             --TT-EEEEEEESHHHHHHHHHH-CCCTBEEEEEESSE-HHHHT-------------S--CEEE-ESS-GGGCTTESEEE
T ss_pred             EcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCch-hhhhh-------------H--HHHH-hhhHHHHHhhheEEE
Confidence            57899999999999999999997 68999999999885 11111             0  1111 124455678899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .+.+. ++    +++......+.-.+++|++
T Consensus        66 ~at~d-~~----~n~~i~~~a~~~~i~vn~~   91 (103)
T PF13241_consen   66 AATDD-PE----LNEAIYADARARGILVNVV   91 (103)
T ss_dssp             E-SS--HH----HHHHHHHHHHHTTSEEEET
T ss_pred             ecCCC-HH----HHHHHHHHHhhCCEEEEEC
Confidence            88763 22    4455555556556788874

>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.09  E-value=0.0021  Score=61.54  Aligned_cols=104  Identities=24%  Similarity=0.356  Sum_probs=62.3

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-hh-hhhhccCCCCccccccCCHHHHh-hcCCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YG-QFLKANGEQPVTWKRASSMDEVL-READVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV~l~  243 (342)
                      +|+|+|.|+||..+|..|+ .-|.+|..|+++++. .+..... .. .+... ...+.......++++.+ ..+|+|+++
T Consensus         2 kI~IiGaGa~G~ala~~L~-~~g~~V~l~~r~~~~-~~~i~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~Dliiia   78 (326)
T PRK14620          2 KISILGAGSFGTAIAIALS-SKKISVNLWGRNHTT-FESINTKRKNLKYLPT-CHLPDNISVKSAIDEVLSDNATCIILA   78 (326)
T ss_pred             EEEEECcCHHHHHHHHHHH-HCCCeEEEEecCHHH-HHHHHHcCCCcccCCC-CcCCCCeEEeCCHHHHHhCCCCEEEEE
Confidence            6999999999999999984 568999999987642 2221110 00 00000 00011122335677766 589999999


Q ss_pred             CCCCcccccccCHHHHh-cCCCCcEEEEcCCCc
Q 019387          244 PVLDKTTYHLINKERLA-TMKKEAILVNCSRGP  275 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~-~mk~ga~lINvaRG~  275 (342)
                      +|. .++...+.. ... .++++..+|...-|=
T Consensus        79 vks-~~~~~~l~~-l~~~~l~~~~~vv~~~nGi  109 (326)
T PRK14620         79 VPT-QQLRTICQQ-LQDCHLKKNTPILICSKGI  109 (326)
T ss_pred             eCH-HHHHHHHHH-HHHhcCCCCCEEEEEEcCe
Confidence            984 344444433 222 556677777776664

>PRK01713 ornithine carbamoyltransferase; Provisional

Probab=97.04  E-value=0.1  Score=50.39  Aligned_cols=107  Identities=12%  Similarity=0.145  Sum_probs=66.2

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .+.|++|++||=+  ++.++.+..+ ..||++|.+..|..-...+...+....+....+   ..+....++++.++++|+
T Consensus       153 ~l~gl~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv  228 (334)
T PRK01713        153 PLSEISYVYIGDARNNMGNSLLLIG-AKLGMDVRICAPKALLPEASLVEMCEKFAKESG---ARITVTDDIDKAVKGVDF  228 (334)
T ss_pred             CcCCcEEEEECCCccCHHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            4789999999986  6788888876 579999999887532211111110001111111   123345799999999999


Q ss_pred             EEEcC----CCCcc---------cccccCHHHHhcC-CCCcEEEEcC
Q 019387          240 ISLHP----VLDKT---------TYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       240 V~l~~----pl~~~---------t~~li~~~~l~~m-k~ga~lINva  272 (342)
                      |..-.    ....+         ...-++.+.++.. |++++|.-+.
T Consensus       229 Vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l  275 (334)
T PRK01713        229 VHTDVWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL  275 (334)
T ss_pred             EEEcceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence            97632    11000         1234677888876 7888887664

>PTZ00117 malate dehydrogenase; Provisional

Probab=97.04  E-value=0.0037  Score=59.97  Aligned_cols=131  Identities=16%  Similarity=0.257  Sum_probs=73.0

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +..++|+|||.|.||..+|..++ ..| .++..||...+.......+. .. ...............+.+ .+++||+|+
T Consensus         3 ~~~~KI~IIGaG~vG~~ia~~l~-~~~~~~l~L~Di~~~~~~g~~lDl-~~-~~~~~~~~~~i~~~~d~~-~l~~ADiVV   78 (319)
T PTZ00117          3 VKRKKISMIGAGQIGSTVALLIL-QKNLGDVVLYDVIKGVPQGKALDL-KH-FSTLVGSNINILGTNNYE-DIKDSDVVV   78 (319)
T ss_pred             CCCcEEEEECCCHHHHHHHHHHH-HCCCCeEEEEECCCccchhHHHHH-hh-hccccCCCeEEEeCCCHH-HhCCCCEEE
Confidence            35679999999999999998864 445 68999998764321111111 00 000010111222235666 669999999


Q ss_pred             EcC--CCCc-ccc--------cccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCceEEE--Ee
Q 019387          242 LHP--VLDK-TTY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG--LD  297 (342)
Q Consensus       242 l~~--pl~~-~t~--------~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~--~g~i~~aa--LD  297 (342)
                      ++.  |..+ .++        .++-  .+.+....|.+++||++--.-+-...+.+.-.  ..++.|.+  ||
T Consensus        79 itag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~di~t~~~~~~s~~p~~rviG~gt~ld  151 (319)
T PTZ00117         79 ITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLDCMVKVFQEKSGIPSNKICGMAGVLD  151 (319)
T ss_pred             ECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHHHHHHHHHHhhCCCcccEEEecchHH
Confidence            998  4332 111        1111  12344456788999986443333344444321  35666665  55

>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed

Probab=97.03  E-value=0.0057  Score=61.89  Aligned_cols=104  Identities=20%  Similarity=0.212  Sum_probs=64.7

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      +..+.|++++|+|.|.+|++++..| ...|++|.++++..... +...+.+       +..   .....++.+ +.++|+
T Consensus       327 ~~~~~~k~vlIiGaGgiG~aia~~L-~~~G~~V~i~~R~~~~~-~~la~~~-------~~~---~~~~~~~~~-l~~~Di  393 (477)
T PRK09310        327 NIPLNNQHVAIVGAGGAAKAIATTL-ARAGAELLIFNRTKAHA-EALASRC-------QGK---AFPLESLPE-LHRIDI  393 (477)
T ss_pred             CCCcCCCEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHh-------ccc---eechhHhcc-cCCCCE
Confidence            3567899999999999999999998 57899999999876432 2221111       000   001122222 468999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      |+.|+|..-.    +.. .+.     .+++++.-.+....  |.++.++
T Consensus       394 VInatP~g~~----~~~-~l~-----~~v~D~~Y~P~~T~--ll~~A~~  430 (477)
T PRK09310        394 IINCLPPSVT----IPK-AFP-----PCVVDINTLPKHSP--YTQYARS  430 (477)
T ss_pred             EEEcCCCCCc----chh-HHh-----hhEEeccCCCCCCH--HHHHHHH
Confidence            9999997532    221 221     27777776664433  5555544

>TIGR00670 asp_carb_tr aspartate carbamoyltransferase

Probab=97.01  E-value=0.16  Score=48.38  Aligned_cols=111  Identities=24%  Similarity=0.324  Sum_probs=71.3

Q ss_pred             ccCCCeEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~L~gktvgIvG~G---~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      .+.|++|+++|-|   ++.++.+..+ ..||++|.+..|..-...+.+.+.    ....|   ..+....++++.++++|
T Consensus       147 ~l~g~~va~vGD~~~~~v~~Sl~~~~-a~~g~~v~~~~P~~~~~~~~~~~~----~~~~G---~~v~~~~d~~~a~~~aD  218 (301)
T TIGR00670       147 RLDGLKIALVGDLKYGRTVHSLAEAL-TRFGVEVYLISPEELRMPKEILEE----LKAKG---IKVRETESLEEVIDEAD  218 (301)
T ss_pred             CCCCCEEEEEccCCCCcHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHH----HHHcC---CEEEEECCHHHHhCCCC
Confidence            3789999999995   9999999986 589999999887643211221111    11111   22334579999999999


Q ss_pred             EEEEcCCCCc------c-----cccccCHHHHhcCCCCcEEEEcC-CCcccCHH
Q 019387          239 VISLHPVLDK------T-----TYHLINKERLATMKKEAILVNCS-RGPVIDEV  280 (342)
Q Consensus       239 iV~l~~pl~~------~-----t~~li~~~~l~~mk~ga~lINva-RG~~vd~~  280 (342)
                      +|..---..+      +     ...-++++.++.+|++++|.-+. ||.=|+.+
T Consensus       219 vvyt~~~~~er~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mHclPRg~Ev~~~  272 (301)
T TIGR00670       219 VLYVTRIQKERFPDPEEYEKYKGSYGITLERLEAAKKGVIIMHPLPRVDEIDPS  272 (301)
T ss_pred             EEEECCccccccCCHHHHHHHhcCCeECHHHHhhcCCCCEEECCCCCCcccCHH
Confidence            9976321100      1     12345677888888888777553 65544443

Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.

>PLN02477 glutamate dehydrogenase

Probab=97.00  E-value=0.011  Score=58.58  Aligned_cols=117  Identities=25%  Similarity=0.287  Sum_probs=72.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCC----------chhHHHHHHhhhhhhhhccCCCCccccccCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLY----------QATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      .++.|++|.|.|||++|+.+|+.| ...|++|++ .|.+          .+ .+.++....+.+ .  +..  +....+.
T Consensus       202 ~~l~g~~VaIqGfGnVG~~~A~~L-~e~GakVVaVsD~~G~iy~~~GLD~~-~L~~~k~~~g~l-~--~~~--~a~~i~~  274 (410)
T PLN02477        202 KSIAGQTFVIQGFGNVGSWAAQLI-HEKGGKIVAVSDITGAVKNENGLDIP-ALRKHVAEGGGL-K--GFP--GGDPIDP  274 (410)
T ss_pred             CCccCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEECCCCeEECCCCCCHH-HHHHHHHhcCch-h--ccc--cceEecC
Confidence            478999999999999999999997 688999994 4544          11 111111110000 0  000  0111111


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       230 l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      -+-+...||+++-|.     ..+.|+++....++ =.+++--+-+++ ..+ -.+.|++..|.
T Consensus       275 ~e~l~~~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~e-a~~~L~~rGI~  329 (410)
T PLN02477        275 DDILVEPCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPE-ADEILRKKGVV  329 (410)
T ss_pred             ccceeccccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHH-HHHHHHHCCcE
Confidence            122234799998774     35689998888886 347888889988 444 45777776553

>PRK02255 putrescine carbamoyltransferase; Provisional

Probab=97.00  E-value=0.14  Score=49.58  Aligned_cols=114  Identities=14%  Similarity=0.191  Sum_probs=70.7

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|++|+++|= .++.++++..+ ..||++|.+..|..-...+.............+   ..+....++++.++++|+|
T Consensus       151 ~l~glkv~~vGD~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~eav~~aDvv  226 (338)
T PRK02255        151 KLEDCKVVFVGDATQVCVSLMFIA-TKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSG---GSVLVTDDVDEAVKDADFV  226 (338)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HhCCCEEEEECCCccccCHHHHHHHHHHHHhcC---CeEEEEcCHHHHhCCCCEE
Confidence            478999999997 57888888876 589999999887632111111110000001111   1233457999999999999


Q ss_pred             EEcC-----CCCc---c------cccccCHHHHhcCCCCcEEEEcC---CCcccCH
Q 019387          241 SLHP-----VLDK---T------TYHLINKERLATMKKEAILVNCS---RGPVIDE  279 (342)
Q Consensus       241 ~l~~-----pl~~---~------t~~li~~~~l~~mk~ga~lINva---RG~~vd~  279 (342)
                      ..-.     ....   +      ...-++++.++.+|++++|.-+.   ||.=|+.
T Consensus       227 y~~~w~~~~~~~~~~~~r~~~~~~~y~v~~ell~~a~~~~ivmHpLP~~Rg~Eis~  282 (338)
T PRK02255        227 YTDVWYGLYDAELSEEERMAIFYPKYQVTPELMAKAGPHAKFMHCLPATRGEEVTD  282 (338)
T ss_pred             EEcccHhhccchhhHHHHHHhhCCCceECHHHHhccCCCCEEeCCCCCcCCceecH
Confidence            8733     1100   0      12567888888888888887664   5544433

>PRK00779 ornithine carbamoyltransferase; Provisional

Probab=96.99  E-value=0.16  Score=48.49  Aligned_cols=110  Identities=20%  Similarity=0.256  Sum_probs=70.0

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +.|++|+++|= +++.++.+..+ ..||++|....|..-...+...+.   +....+   ..+....+++++++++|+|.
T Consensus       150 l~gl~i~~vGd~~~v~~Sl~~~l-~~~g~~v~~~~P~~~~~~~~~~~~---~~~~~g---~~~~~~~d~~~a~~~aDvvy  222 (304)
T PRK00779        150 LKGLKVAWVGDGNNVANSLLLAA-ALLGFDLRVATPKGYEPDPEIVEK---IAKETG---ASIEVTHDPKEAVKGADVVY  222 (304)
T ss_pred             cCCcEEEEEeCCCccHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHH---HHHHcC---CeEEEEcCHHHHhCCCCEEE
Confidence            67999999997 78999999986 689999999887542211111111   011111   12334579999999999998


Q ss_pred             EcC----CCCc---c-----cccccCHHHHhcCCCCcEEEEcC---CCcccCH
Q 019387          242 LHP----VLDK---T-----TYHLINKERLATMKKEAILVNCS---RGPVIDE  279 (342)
Q Consensus       242 l~~----pl~~---~-----t~~li~~~~l~~mk~ga~lINva---RG~~vd~  279 (342)
                      .-.    ....   +     ...-++++.++.+|++++|.-+.   ||.=|+.
T Consensus       223 ~~~w~~~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHplP~~R~~Ei~~  275 (304)
T PRK00779        223 TDVWVSMGQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCLPAHRGEEVTD  275 (304)
T ss_pred             ecCccccccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCCCccCCCcccH
Confidence            642    1101   1     23456778888888887776654   4543433

>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]

Probab=96.98  E-value=0.0041  Score=61.31  Aligned_cols=103  Identities=21%  Similarity=0.258  Sum_probs=69.5

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .|.++++.|||.|-||.-+|+.| ...|. +|++.+|..+.. ...-..+       +   ..+....++.+.+.++|+|
T Consensus       175 ~L~~~~vlvIGAGem~~lva~~L-~~~g~~~i~IaNRT~erA-~~La~~~-------~---~~~~~l~el~~~l~~~DvV  242 (414)
T COG0373         175 SLKDKKVLVIGAGEMGELVAKHL-AEKGVKKITIANRTLERA-EELAKKL-------G---AEAVALEELLEALAEADVV  242 (414)
T ss_pred             ccccCeEEEEcccHHHHHHHHHH-HhCCCCEEEEEcCCHHHH-HHHHHHh-------C---CeeecHHHHHHhhhhCCEE
Confidence            38899999999999999999998 57774 788889887643 2111111       1   1222446778889999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCC---CCcEEEEcCCCcccCH
Q 019387          241 SLHPVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDE  279 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk---~ga~lINvaRG~~vd~  279 (342)
                      +.+..   ....+|..+.+...-   +.-++||.+=..-|++
T Consensus       243 issTs---a~~~ii~~~~ve~a~~~r~~~livDiavPRdie~  281 (414)
T COG0373         243 ISSTS---APHPIITREMVERALKIRKRLLIVDIAVPRDVEP  281 (414)
T ss_pred             EEecC---CCccccCHHHHHHHHhcccCeEEEEecCCCCCCc
Confidence            98864   445677766554431   1247788775544443

>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot

Probab=96.97  E-value=0.0046  Score=49.81  Aligned_cols=105  Identities=25%  Similarity=0.336  Sum_probs=62.7

Q ss_pred             eEEEEecCHHHHHHHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEE
Q 019387          167 TVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~a-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l  242 (342)
                      ++||||+|.+|+...+.+.+. -+.++. ++|+.++. .+.+.+.+            +...+++++++++  +.|+|++
T Consensus         2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~-~~~~~~~~------------~~~~~~~~~~ll~~~~~D~V~I   68 (120)
T PF01408_consen    2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPER-AEAFAEKY------------GIPVYTDLEELLADEDVDAVII   68 (120)
T ss_dssp             EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHH-HHHHHHHT------------TSEEESSHHHHHHHTTESEEEE
T ss_pred             EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHH-HHHHHHHh------------cccchhHHHHHHHhhcCCEEEE
Confidence            799999999999998776433 367776 68888754 23322222            1224679999998  7899999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHc
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINv-aRG~~vd~~aL~~aL~~  288 (342)
                      +.|.  ..+.-+-...++.=+  .+++.- ---.+-+-+.|.++.++
T Consensus        69 ~tp~--~~h~~~~~~~l~~g~--~v~~EKP~~~~~~~~~~l~~~a~~  111 (120)
T PF01408_consen   69 ATPP--SSHAEIAKKALEAGK--HVLVEKPLALTLEEAEELVEAAKE  111 (120)
T ss_dssp             ESSG--GGHHHHHHHHHHTTS--EEEEESSSSSSHHHHHHHHHHHHH
T ss_pred             ecCC--cchHHHHHHHHHcCC--EEEEEcCCcCCHHHHHHHHHHHHH
Confidence            9994  333222233333222  455542 11133444555555544

GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....

>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial

Probab=96.97  E-value=0.0064  Score=64.72  Aligned_cols=141  Identities=16%  Similarity=0.181  Sum_probs=92.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCCC-------ccccccCCHHHHhh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP-------VTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~l~~ll~  235 (342)
                      ++|+|||.|.||..+|..++ ..|++|+.||+.++......   ...+...........       .......+++ .++
T Consensus       336 ~~v~ViGaG~MG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  413 (737)
T TIGR02441       336 KTLAVLGAGLMGAGIAQVSV-DKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFK  413 (737)
T ss_pred             cEEEEECCCHhHHHHHHHHH-hCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhc
Confidence            57999999999999999875 55999999999886422111   111111111111100       1122335665 468


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      +||+|+=++|-+.+.+.-+-++.=+.++++++|...+.  -++...|.+++.. .-+.+++.-|.+-+  |-+-+.++
T Consensus       414 ~aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTS--sl~i~~la~~~~~-p~r~ig~Hff~P~~~m~LvEvv~g  488 (737)
T TIGR02441       414 NADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTS--ALPIKDIAAVSSR-PEKVIGMHYFSPVDKMQLLEIITH  488 (737)
T ss_pred             cCCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCC--CCCHHHHHhhcCC-ccceEEEeccCCcccCceEEEeCC
Confidence            99999999998888888887777788999988875433  3667778888754 45567888775433  44444444

Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.97  E-value=0.0016  Score=61.51  Aligned_cols=40  Identities=20%  Similarity=0.384  Sum_probs=34.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~  204 (342)
                      .|+.+||+|+|.+|+--.+. |+|||++|+++|+..+++.+
T Consensus       181 pG~~vgI~GlGGLGh~aVq~-AKAMG~rV~vis~~~~kkee  220 (360)
T KOG0023|consen  181 PGKWVGIVGLGGLGHMAVQY-AKAMGMRVTVISTSSKKKEE  220 (360)
T ss_pred             CCcEEEEecCcccchHHHHH-HHHhCcEEEEEeCCchhHHH
Confidence            79999999999999988887 79999999999998755433

>PRK09414 glutamate dehydrogenase; Provisional

Probab=96.95  E-value=0.0064  Score=60.68  Aligned_cols=120  Identities=12%  Similarity=0.132  Sum_probs=72.5

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEE-c----------CCchhHHHHHHhhh-hhhhhccCCCCc-cccc
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-D----------LYQATRLEKFVTAY-GQFLKANGEQPV-TWKR  226 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~-d----------~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~  226 (342)
                      +.++.|++|.|.|||++|+.+|+.| ..+|++|++. |          ...+ .+.++.+.. +.+ .  +.... +. .
T Consensus       227 ~~~l~g~rVaIqGfGnVG~~~A~~L-~~~GakVVavsDs~G~iyn~~GLD~~-~L~~~k~~~~~~l-~--~~~~~~~~-~  300 (445)
T PRK09414        227 GDSFEGKRVVVSGSGNVAIYAIEKA-QQLGAKVVTCSDSSGYVYDEEGIDLE-KLKEIKEVRRGRI-S--EYAEEFGA-E  300 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHH-HHHHHHHhcCCch-h--hhhhhcCC-e
Confidence            3568999999999999999999998 6899999987 6          2221 111111100 000 0  00000 00 0


Q ss_pred             cCCHHHHhh-cCCEEEEcCCCCcccccccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          227 ASSMDEVLR-EADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       227 ~~~l~~ll~-~aDiV~l~~pl~~~t~~li~~~~l~~mk--~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ..+.++++. .||+++-|..     .+.|+.+....++  +=.+++-.+-|++ +.+ -.+.|.+..|.
T Consensus       301 ~i~~~~i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~-A~~~L~~rGI~  362 (445)
T PRK09414        301 YLEGGSPWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPE-AIEVFLEAGVL  362 (445)
T ss_pred             ecCCccccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHH-HHHHHHHCCcE
Confidence            112333333 6999998865     5788888777773  2347777888887 444 45677766543

>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent

Probab=96.95  E-value=0.0037  Score=59.54  Aligned_cols=127  Identities=16%  Similarity=0.231  Sum_probs=73.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      ++|+|||.|.+|..+|..++ ..|. +|..+|...........+.+... .. ...........++++ +++||+|+++.
T Consensus         2 ~KV~VIGaG~vG~~iA~~la-~~g~~~VvlvDi~~~l~~g~a~d~~~~~-~~-~~~~~~i~~t~d~~~-~~~aDiVIita   77 (305)
T TIGR01763         2 KKISVIGAGFVGATTAFRLA-EKELADLVLLDVVEGIPQGKALDMYEAS-PV-GGFDTKVTGTNNYAD-TANSDIVVITA   77 (305)
T ss_pred             CEEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCCChhHHHHHhhhhhh-hc-cCCCcEEEecCCHHH-hCCCCEEEEcC
Confidence            47999999999999999874 4443 89999986542211111111000 00 000112223357777 68999999998


Q ss_pred             CCCccccc------------ccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEEE--Ee
Q 019387          245 VLDKTTYH------------LINK--ERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG--LD  297 (342)
Q Consensus       245 pl~~~t~~------------li~~--~~l~~mk~ga~lINvaRG~~vd~~aL~~a--L~~g~i~~aa--LD  297 (342)
                      +. |...+            ++-.  +.+....+++.+|+++-.-=+-...+.+.  +...++.|.+  ||
T Consensus        78 g~-p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~di~t~~~~~~sg~~~~rviG~g~~ld  147 (305)
T TIGR01763        78 GL-PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPLDAMTYVAWQKSGFPKERVIGQAGVLD  147 (305)
T ss_pred             CC-CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence            74 33222            1111  23344457889999976554444445555  4445666765  66

The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=96.95  E-value=0.0039  Score=57.59  Aligned_cols=92  Identities=14%  Similarity=0.203  Sum_probs=61.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      -++-|+|-|.+++++|+. ++.+|++|+++|++++...                           ...+..++.+....|
T Consensus       101 ~~L~IfGaG~va~~la~l-a~~lGf~V~v~D~R~~~~~---------------------------~~~~~~~~~~~~~~~  152 (246)
T TIGR02964       101 PHVVLFGAGHVGRALVRA-LAPLPCRVTWVDSREAEFP---------------------------EDLPDGVATLVTDEP  152 (246)
T ss_pred             CEEEEECCcHHHHHHHHH-HhcCCCEEEEEeCCccccc---------------------------ccCCCCceEEecCCH
Confidence            389999999999999998 5899999999998754110                           000123333322222


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aa  295 (342)
                                .+.+..+.++..+|=+.|+.-.|.+.|..+|++...+..+
T Consensus       153 ----------~~~~~~~~~~t~vvi~th~h~~D~~~L~~aL~~~~~~YIG  192 (246)
T TIGR02964       153 ----------EAEVAEAPPGSYFLVLTHDHALDLELCHAALRRGDFAYFG  192 (246)
T ss_pred             ----------HHHHhcCCCCcEEEEEeCChHHHHHHHHHHHhCCCCcEEE
Confidence                      2333445567777777899989999999998544443333

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related

Probab=96.93  E-value=0.014  Score=53.88  Aligned_cols=123  Identities=22%  Similarity=0.308  Sum_probs=72.9

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEE--------cCCchh--HHHHHHhhhhhhhhccCC-CCccccccCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQAT--RLEKFVTAYGQFLKANGE-QPVTWKRASS  229 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~--------d~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  229 (342)
                      .++.|+++.|-|+|++|+.+|+.| ...|++|++.        |+..-.  .+....+..+..+..... .+..... .+
T Consensus        28 ~~l~g~~v~IqGfG~VG~~~a~~l-~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~-~~  105 (244)
T PF00208_consen   28 DSLEGKRVAIQGFGNVGSHAARFL-AELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEY-IP  105 (244)
T ss_dssp             HSSTTCEEEEEESSHHHHHHHHHH-HHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEE-EC
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeE-ec
Confidence            368999999999999999999998 5789998876        554321  112211121110000000 0000111 12


Q ss_pred             HH-HHh-hcCCEEEEcCCCCcccccccCHHHHh-cCCCCc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          230 MD-EVL-READVISLHPVLDKTTYHLINKERLA-TMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       230 l~-~ll-~~aDiV~l~~pl~~~t~~li~~~~l~-~mk~ga-~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      -+ +++ ..||+++.|.     ..+.|+.+... .++.|+ +++--+-+++- .++.. .|++..|.
T Consensus       106 ~~~~il~~~~DiliP~A-----~~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI~  165 (244)
T PF00208_consen  106 NDDEILSVDCDILIPCA-----LGNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGIL  165 (244)
T ss_dssp             HHCHGGTSSSSEEEEES-----SSTSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-E
T ss_pred             cccccccccccEEEEcC-----CCCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCCE
Confidence            21 444 5899999884     35788888888 777665 55566777765 55444 77776654

They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....

>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2

Probab=96.91  E-value=0.019  Score=53.26  Aligned_cols=123  Identities=14%  Similarity=0.122  Sum_probs=71.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCc-----h----hHHHH---HHhhhhhhhhccCCCCcccccc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQ-----A----TRLEK---FVTAYGQFLKANGEQPVTWKRA  227 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~-d~~~-----~----~~~~~---~~~~~~~~~~~~~~~~~~~~~~  227 (342)
                      .++.|+||.|.|||++|+.+|+.| ..+|++|++. |.+.     .    +.+..   ........+........+....
T Consensus        34 ~~l~g~~vaIqGfGnVG~~~a~~L-~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~  112 (254)
T cd05313          34 ETLKGKRVAISGSGNVAQYAAEKL-LELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF  112 (254)
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence            578999999999999999999998 6899999954 4111     0    00100   0000000000000000001111


Q ss_pred             CCHHHH-hhcCCEEEEcCCCCcccccccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          228 SSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       228 ~~l~~l-l~~aDiV~l~~pl~~~t~~li~~~~l~~mk--~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                       +-+++ -..||+++-|.     +.+.|+.+....++  +=.+++-.+-|++-+  +-.+.|++..+.
T Consensus       113 -~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~--~a~~~L~~rGI~  172 (254)
T cd05313         113 -EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA--EAIEVFRQAGVL  172 (254)
T ss_pred             -CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH--HHHHHHHHCCcE
Confidence             22222 34699999774     56899999888884  234777778888754  345777766554

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t

>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB

Probab=96.90  E-value=0.0098  Score=63.13  Aligned_cols=141  Identities=16%  Similarity=0.166  Sum_probs=91.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCCC-------ccccccCCHHHHhh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQP-------VTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~-------~~~~~~~~l~~ll~  235 (342)
                      ++|+|||.|.||..+|..++ ..|.+|+.||++++......   ...+...........       .......+++ .++
T Consensus       314 ~~v~ViGaG~mG~gIA~~~a-~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~  391 (714)
T TIGR02437       314 KQAAVLGAGIMGGGIAYQSA-SKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA-GFD  391 (714)
T ss_pred             ceEEEECCchHHHHHHHHHH-hCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH-Hhc
Confidence            57999999999999999986 56999999999876422111   111111111111000       1122234554 468


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      +||+|+=++|-+.+.+.-+-++.=+.++++++|-..+.+  ++..+|.++++. .-+..++=-|.+-+  |-+-+.||
T Consensus       392 ~aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~--l~i~~ia~~~~~-p~r~ig~Hff~P~~~~~lvEvv~g  466 (714)
T TIGR02437       392 NVDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTST--ISISLLAKALKR-PENFCGMHFFNPVHRMPLVEVIRG  466 (714)
T ss_pred             CCCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-cccEEEEecCCCcccCceEeecCC
Confidence            999999999988888877777777889999988765443  566777787753 44456666554433  44445555

Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=96.89  E-value=0.0039  Score=59.42  Aligned_cols=121  Identities=16%  Similarity=0.160  Sum_probs=71.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-ccCCCCc-cccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPV-TWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|+|||.|.||..+|.+| ...|.+|.++.+........    .+..+. ..+.... ......+.+ .+..+|+|++|
T Consensus         6 m~I~IiG~GaiG~~lA~~L-~~~g~~V~~~~r~~~~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vila   79 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAML-ARAGFDVHFLLRSDYEAVRE----NGLQVDSVHGDFHLPPVQAYRSAE-DMPPCDWVLVG   79 (313)
T ss_pred             cEEEEECCCHHHHHHHHHH-HHCCCeEEEEEeCCHHHHHh----CCeEEEeCCCCeeecCceEEcchh-hcCCCCEEEEE
Confidence            5899999999999999998 46789999988865322111    010010 0111000 011112333 45789999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aa  295 (342)
                      ++.. ++...+. .....+++++.++...-| +-.++.|.+.+-..++.++.
T Consensus        80 vK~~-~~~~~~~-~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g~  128 (313)
T PRK06249         80 LKTT-ANALLAP-LIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGGL  128 (313)
T ss_pred             ecCC-ChHhHHH-HHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEEe
Confidence            9853 3333222 223345678888887665 34667777777666666553

>PRK12562 ornithine carbamoyltransferase subunit F; Provisional

Probab=96.89  E-value=0.19  Score=48.50  Aligned_cols=107  Identities=11%  Similarity=0.103  Sum_probs=66.8

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .+.|++|+++|-+  ++.++.+..+ ..||++|.+..|..-...+.+.+....+....+   ..+....++++.++++|+
T Consensus       153 ~l~gl~va~vGD~~~~v~~S~~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~~a~~~aDv  228 (334)
T PRK12562        153 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEASLVAECSALAQKHG---GKITLTEDIAAGVKGADF  228 (334)
T ss_pred             CcCCcEEEEECCCCCCHHHHHHHHH-HHcCCEEEEECCcccCCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            4789999999976  7899998886 579999998877542111111111001111111   123345789999999999


Q ss_pred             EEEcCC----C-Cc---c-----cccccCHHHHhcC-CCCcEEEEcC
Q 019387          240 ISLHPV----L-DK---T-----TYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       240 V~l~~p----l-~~---~-----t~~li~~~~l~~m-k~ga~lINva  272 (342)
                      |..-.-    . .+   +     -..-++.+.++.. |++++|.-+.
T Consensus       229 vyt~~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL  275 (334)
T PRK12562        229 IYTDVWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL  275 (334)
T ss_pred             EEEcCccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence            976531    0 00   0     1344577888875 7888887764

>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family

Probab=96.88  E-value=0.002  Score=59.89  Aligned_cols=127  Identities=18%  Similarity=0.280  Sum_probs=73.7

Q ss_pred             EEEEec-CHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          168 VGVIGA-GRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       168 vgIvG~-G~IG~~vA~~l~~afg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      |+|||. |.+|..+|..|+ .-|    -++..||...+. .+.............  ....+...+++.+.+++||+|++
T Consensus         1 I~IIGagG~vG~~ia~~l~-~~~~~~~~el~L~D~~~~~-l~~~~~dl~~~~~~~--~~~~i~~~~d~~~~~~~aDiVv~   76 (263)
T cd00650           1 IAVIGAGGNVGPALAFGLA-DGSVLLAIELVLYDIDEEK-LKGVAMDLQDAVEPL--ADIKVSITDDPYEAFKDADVVII   76 (263)
T ss_pred             CEEECCCChHHHHHHHHHH-hCCCCcceEEEEEeCCccc-chHHHHHHHHhhhhc--cCcEEEECCchHHHhCCCCEEEE
Confidence            589999 999999999874 445    689999987643 222211111111111  12233345677888999999998


Q ss_pred             cCCCC--c---------ccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH--HHcCCceEEE-Eec
Q 019387          243 HPVLD--K---------TTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEH--LKQNPMFRVG-LDV  298 (342)
Q Consensus       243 ~~pl~--~---------~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~a--L~~g~i~~aa-LDV  298 (342)
                      +.-..  +         ++..++.  .+.+....|.+.+||++-.-=+-...+.+.  +...++.|.+ +|.
T Consensus        77 t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~d~~t~~~~~~sg~~~~kviG~~~ld~  148 (263)
T cd00650          77 TAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPVDIITYLVWRYSGLPKEKVIGLGTLDP  148 (263)
T ss_pred             CCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence            65221  1         1111121  123444558899999963222333344444  3456788888 774

Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=96.88  E-value=0.004  Score=51.26  Aligned_cols=110  Identities=25%  Similarity=0.354  Sum_probs=60.7

Q ss_pred             eEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          167 TVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      +|+|+|+ |+||+.+++.+.+.-++++. ++++.++....+   ..+.+   .+..+.+....+++++++.++|+++-..
T Consensus         2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~---d~g~~---~~~~~~~~~v~~~l~~~~~~~DVvIDfT   75 (124)
T PF01113_consen    2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGK---DVGEL---AGIGPLGVPVTDDLEELLEEADVVIDFT   75 (124)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTS---BCHHH---CTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccc---hhhhh---hCcCCcccccchhHHHhcccCCEEEEcC
Confidence            7999999 99999999997544788866 577766221100   00000   1112334445689999999999997665


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                        +|+.-.-.-+..   ++.|.-+|--..|---++.+.++.+.
T Consensus        76 --~p~~~~~~~~~~---~~~g~~~ViGTTG~~~~~~~~l~~~a  113 (124)
T PF01113_consen   76 --NPDAVYDNLEYA---LKHGVPLVIGTTGFSDEQIDELEELA  113 (124)
T ss_dssp             ---HHHHHHHHHHH---HHHT-EEEEE-SSSHHHHHHHHHHHT
T ss_pred             --ChHHhHHHHHHH---HhCCCCEEEECCCCCHHHHHHHHHHh
Confidence              333222111222   23466666666666444444555544

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=96.81  E-value=0.0039  Score=55.79  Aligned_cols=98  Identities=22%  Similarity=0.254  Sum_probs=61.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhccCCCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|+ ++..+|+..-                  .+.+...+...+..   ....
T Consensus        17 ~kl~~~~VlviG~GglGs~ia~~La-~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~   92 (202)
T TIGR02356        17 QRLLNSHVLIIGAGGLGSPAALYLA-GAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELN---SDIQ   92 (202)
T ss_pred             HHhcCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhC---CCCE
Confidence            5689999999999999999999984 6787 7888887621                  11111111110000   0000


Q ss_pred             cc-cc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCC
Q 019387          222 VT-WK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (342)
Q Consensus       222 ~~-~~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk  263 (342)
                      .. ..   ...+++++++++|+|+.|.. +.+++..+++...+..+
T Consensus        93 i~~~~~~i~~~~~~~~~~~~D~Vi~~~d-~~~~r~~l~~~~~~~~i  137 (202)
T TIGR02356        93 VTALKERVTAENLELLINNVDLVLDCTD-NFATRYLINDACVALGT  137 (202)
T ss_pred             EEEehhcCCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence            00 00   11245678899999999885 56788888876655443

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK03515 ornithine carbamoyltransferase subunit I; Provisional

Probab=96.81  E-value=0.12  Score=49.95  Aligned_cols=107  Identities=13%  Similarity=0.132  Sum_probs=66.1

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .+.|++|++||-+  ++.++++..+ ..||+++.+..|..-...+...+.........+   ..+....++++.++++|+
T Consensus       153 ~l~g~~ia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~ea~~~aDv  228 (336)
T PRK03515        153 AFNEMTLAYAGDARNNMGNSLLEAA-ALTGLDLRLVAPKACWPEAALVTECRALAQKNG---GNITLTEDIAEGVKGADF  228 (336)
T ss_pred             CcCCCEEEEeCCCcCcHHHHHHHHH-HHcCCEEEEECCchhcCcHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCE
Confidence            4789999999976  6899999886 589999999887542221211111001111112   123345799999999999


Q ss_pred             EEEcCCCCc-------------ccccccCHHHHhcC-CCCcEEEEcC
Q 019387          240 ISLHPVLDK-------------TTYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       240 V~l~~pl~~-------------~t~~li~~~~l~~m-k~ga~lINva  272 (342)
                      |..-.-...             ....-++++.++.. |++++|.-+.
T Consensus       229 vytd~W~sm~~~~~~~~er~~~~~~y~v~~~lm~~a~k~~~ivmHcL  275 (336)
T PRK03515        229 IYTDVWVSMGEPKEVWAERIALLRPYQVNSKMMQLTGNPQVKFLHCL  275 (336)
T ss_pred             EEecCcccCcchhHHHHHHHHhccCCccCHHHHhcccCCCCEEECCC
Confidence            987521110             11244567777764 6777776653

>PRK04284 ornithine carbamoyltransferase; Provisional

Probab=96.81  E-value=0.19  Score=48.47  Aligned_cols=106  Identities=16%  Similarity=0.196  Sum_probs=66.3

Q ss_pred             cCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          163 LKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       163 L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      +.|++|+++|=+  ++.++.+..+ ..||++|.+..|..-...+.............+   ..+....++++.++++|+|
T Consensus       153 l~g~kia~vGD~~~~v~~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea~~~aDvv  228 (332)
T PRK04284        153 YKDIKFTYVGDGRNNVANALMQGA-AIMGMDFHLVCPKELNPDDELLNKCKEIAAETG---GKITITDDIDEGVKGSDVI  228 (332)
T ss_pred             cCCcEEEEecCCCcchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhCCCCEE
Confidence            679999999975  8889999886 689999999887532211111111000011111   1233457999999999999


Q ss_pred             EEcCCCC--c------c-----cccccCHHHHhcCC-CCcEEEEcC
Q 019387          241 SLHPVLD--K------T-----TYHLINKERLATMK-KEAILVNCS  272 (342)
Q Consensus       241 ~l~~pl~--~------~-----t~~li~~~~l~~mk-~ga~lINva  272 (342)
                      ..-.-..  .      +     ...-++++.++.++ ++++|.-+.
T Consensus       229 y~~~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl  274 (332)
T PRK04284        229 YTDVWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL  274 (332)
T ss_pred             EECCcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence            8742110  0      0     23456778888886 477776654

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.80  E-value=0.0027  Score=61.68  Aligned_cols=118  Identities=19%  Similarity=0.242  Sum_probs=74.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccC-------CCCcc-ccccCCHHHHhhcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-------EQPVT-WKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~l~~ll~~a  237 (342)
                      .+|||+|+|-||-++|-.++ .-|.+|++||.++.. .+.....-.. +..-+       ....+ ....++.++ ++.|
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA-~~G~~ViG~DIn~~~-Vd~ln~G~~~-i~e~~~~~~v~~~v~~g~lraTtd~~~-l~~~   85 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFA-SAGFKVIGVDINQKK-VDKLNRGESY-IEEPDLDEVVKEAVESGKLRATTDPEE-LKEC   85 (436)
T ss_pred             eEEEEEccccccHHHHHHHH-HcCCceEeEeCCHHH-HHHHhCCcce-eecCcHHHHHHHHHhcCCceEecChhh-cccC
Confidence            68999999999999999885 569999999998753 2221110000 00000       00001 112234444 4589


Q ss_pred             CEEEEcCCCCcccc-ccc------C--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          238 DVISLHPVLDKTTY-HLI------N--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       238 DiV~l~~pl~~~t~-~li------~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      |++++|+|. |-+. +--      +  +..-.-||+|.++|==|.-..=.++.++.-|.+
T Consensus        86 dv~iI~VPT-Pl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle  144 (436)
T COG0677          86 DVFIICVPT-PLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLE  144 (436)
T ss_pred             CEEEEEecC-CcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHh
Confidence            999999983 4333 111      1  245567899999998777777677778777755

>PLN02527 aspartate carbamoyltransferase

Probab=96.79  E-value=0.28  Score=46.77  Aligned_cols=109  Identities=18%  Similarity=0.309  Sum_probs=69.2

Q ss_pred             cCCCeEEEEecC---HHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          163 LKGQTVGVIGAG---RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       163 L~gktvgIvG~G---~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      +.|++|+++|=+   ++.++.+..+ ..| |++|.+..|..-...+.+.+.    +..   ....+....++++.+++||
T Consensus       149 l~g~kva~vGD~~~~rv~~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~~----~~~---~g~~~~~~~d~~~a~~~aD  220 (306)
T PLN02527        149 LDGIKVGLVGDLANGRTVRSLAYLL-AKYEDVKIYFVAPDVVKMKDDIKDY----LTS---KGVEWEESSDLMEVASKCD  220 (306)
T ss_pred             cCCCEEEEECCCCCChhHHHHHHHH-HhcCCCEEEEECCCccCCCHHHHHH----HHH---cCCEEEEEcCHHHHhCCCC
Confidence            779999999965   6899999886 456 999998877542111111111    111   1122334578999999999


Q ss_pred             EEEEcCCCCc------c------cccccCHHHHhcCCCCcEEEEcC-CCcccCH
Q 019387          239 VISLHPVLDK------T------TYHLINKERLATMKKEAILVNCS-RGPVIDE  279 (342)
Q Consensus       239 iV~l~~pl~~------~------t~~li~~~~l~~mk~ga~lINva-RG~~vd~  279 (342)
                      +|....-..+      +      ...-++++.++..|++++|.-+. ||.=|+.
T Consensus       221 vvyt~~~q~e~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~ivmHclPRg~Ei~~  274 (306)
T PLN02527        221 VLYQTRIQRERFGERIDLYEAARGKYIVDKKVMDVLPKHAVVMHPLPRLDEITT  274 (306)
T ss_pred             EEEECCcchhhhcchHHHHHHhCCCceECHHHHhccCCCCEEECCCCCcccccH
Confidence            9977432111      0      12556778888888888777654 6643333

>PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.75  E-value=0.47  Score=45.21  Aligned_cols=101  Identities=24%  Similarity=0.334  Sum_probs=68.5

Q ss_pred             cCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       163 L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      +.|++|+++|=   |++.++++..+ ..||+++.+..|..-.. +             ..  ..+....++++.++++|+
T Consensus       154 l~g~kv~~vGD~~~~~v~~Sl~~~~-~~~g~~~~~~~P~~~~~-~-------------~~--~~~~~~~d~~ea~~~aDv  216 (305)
T PRK00856        154 LEGLKVAIVGDIKHSRVARSNIQAL-TRLGAEVRLIAPPTLLP-E-------------GM--PEYGVHTDLDEVIEDADV  216 (305)
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHH-HHcCCEEEEECCcccCc-c-------------cc--cceEEECCHHHHhCCCCE
Confidence            77999999987   58999999986 68999999988754210 0             00  012345799999999999


Q ss_pred             EEEcCCCCcc-------------cccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          240 ISLHPVLDKT-------------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       240 V~l~~pl~~~-------------t~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      |....-..+.             ....++++.++.+|++++|.=+-   ||.=|+++
T Consensus       217 vyt~~~q~e~~~~~~~~~~~~~~~~y~v~~~ll~~a~~~~~~mHcLPa~Rg~Ev~~~  273 (305)
T PRK00856        217 VMMLRVQKERMDGGLLPSYEEYKRSYGLTAERLALAKPDAIVMHPGPVNRGVEIASD  273 (305)
T ss_pred             EEECCcccccccccchHHHHHHhccCccCHHHHhhcCCCCEEECCCCCCCCCccCHH
Confidence            9764311111             12446777888888887776652   66555544

>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2

Probab=96.72  E-value=0.022  Score=48.89  Aligned_cols=113  Identities=18%  Similarity=0.260  Sum_probs=72.6

Q ss_pred             CCCeEEEEe--cCHHHHHHHHHHHhcCCcEEEEEcCCchh--HHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          164 KGQTVGVIG--AGRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       164 ~gktvgIvG--~G~IG~~vA~~l~~afg~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .|++|+++|  .+++.++++..+ ..||+++.+..|..-.  ......+.........+   ..+....++++.++++|+
T Consensus         1 ~gl~i~~vGD~~~rv~~Sl~~~~-~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~~~~e~l~~aDv   76 (158)
T PF00185_consen    1 KGLKIAYVGDGHNRVAHSLIELL-AKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNG---GKITITDDIEEALKGADV   76 (158)
T ss_dssp             TTEEEEEESSTTSHHHHHHHHHH-HHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHT---TEEEEESSHHHHHTT-SE
T ss_pred             CCCEEEEECCCCChHHHHHHHHH-HHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhC---CCeEEEeCHHHhcCCCCE
Confidence            388999999  489999999986 6899999999887621  21122211111111111   122334799999999999


Q ss_pred             EEEcCCC----Ccc-------cccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          240 ISLHPVL----DKT-------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       240 V~l~~pl----~~~-------t~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      |..-.-.    .+.       ..-.++++.++.+|++++|.-+.   ||.=|+.+
T Consensus        77 vy~~~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~LP~~R~~Ev~~e  131 (158)
T PF00185_consen   77 VYTDRWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPLPANRGEEVSDE  131 (158)
T ss_dssp             EEEESSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESSS--BTTSBEHH
T ss_pred             EEEcCcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCCCCCCCceeCHh
Confidence            9665443    111       12567899999999999998875   56444443

1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....

>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]

Probab=96.71  E-value=0.018  Score=54.69  Aligned_cols=134  Identities=22%  Similarity=0.264  Sum_probs=86.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh--hhccCCCCc--------cccccCCHHHHh
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF--LKANGEQPV--------TWKRASSMDEVL  234 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~--------~~~~~~~l~~ll  234 (342)
                      -++|||||-|.||+.+|..++. -|.+|..+|++++............+  ...++....        ......++. .+
T Consensus         3 i~kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l   80 (307)
T COG1250           3 IKKVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-AL   80 (307)
T ss_pred             ccEEEEEcccchhHHHHHHHhh-cCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hh
Confidence            4789999999999999999754 56999999999653211111100000  011111100        111123333 67


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      ++||+|+=.+|-+-+.++-+-++.=...+++++|-...++  +.-.++.+++ +..=+.+++=.|.+-|
T Consensus        81 ~~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSs--l~it~ia~~~-~rper~iG~HFfNP~~  146 (307)
T COG1250          81 KDADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSS--LSITELAEAL-KRPERFIGLHFFNPVP  146 (307)
T ss_pred             ccCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCC--CCHHHHHHHh-CCchhEEEEeccCCCC
Confidence            8999999999988888877777777778899988755443  5557788888 4455677777665544

>PRK13303 L-aspartate dehydrogenase; Provisional

Probab=96.65  E-value=0.0081  Score=56.05  Aligned_cols=108  Identities=18%  Similarity=0.195  Sum_probs=59.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchh-HHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|||+|+|+||+.+++.+.+.-++++.+ +++.... ....   .+       +   .+.....+++++-...|+|+.|
T Consensus         2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~---~~-------~---~~~~~~~d~~~l~~~~DvVve~   68 (265)
T PRK13303          2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRR---AL-------G---EAVRVVSSVDALPQRPDLVVEC   68 (265)
T ss_pred             cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhh---hh-------c---cCCeeeCCHHHhccCCCEEEEC
Confidence            37999999999999999874332566543 3332211 1111   00       0   0122346788874568999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNPM  291 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~---~aL~~aL~~g~i  291 (342)
                      .|....     -+-....++.|.-++-.+-|.+-|.   +.|.++.+++..
T Consensus        69 t~~~~~-----~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~  114 (265)
T PRK13303         69 AGHAAL-----KEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGA  114 (265)
T ss_pred             CCHHHH-----HHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCC
Confidence            984321     1223333445555555555544443   345555555443

>TIGR03316 ygeW probable carbamoyltransferase YgeW

Probab=96.64  E-value=0.13  Score=50.02  Aligned_cols=106  Identities=21%  Similarity=0.281  Sum_probs=64.4

Q ss_pred             ccCCCeEEEEecC--------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH
Q 019387          162 LLKGQTVGVIGAG--------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (342)
Q Consensus       162 ~L~gktvgIvG~G--------~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  233 (342)
                      .|.|++|+|+|.|        ++.++++..+ ..||++|.+..|..-...+...+.....+...+   ..+....++++.
T Consensus       167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~~ea  242 (357)
T TIGR03316       167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENG---GKFNIVNSMDEA  242 (357)
T ss_pred             ccCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            3789999999853        4557777776 579999999887642211111111001111112   223345799999


Q ss_pred             hhcCCEEEEcCCC--------------Cc-----------------ccccccCHHHHhcCC-CCcEEEEc
Q 019387          234 LREADVISLHPVL--------------DK-----------------TTYHLINKERLATMK-KEAILVNC  271 (342)
Q Consensus       234 l~~aDiV~l~~pl--------------~~-----------------~t~~li~~~~l~~mk-~ga~lINv  271 (342)
                      ++++|+|..-.-.              .+                 ....-++++.++.+| ++++|.-+
T Consensus       243 ~~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~vt~e~l~~a~~~~~i~MHc  312 (357)
T TIGR03316       243 FKDADIVYPKSWAPIAAMEKRTELYTGSDTEGAELLEQELLSQNKKHKDWVCTEERMALTHDGEALYMHC  312 (357)
T ss_pred             hCCCCEEEECCeeccccccccchhcccchhhhhhhhhccchhHHHHhcCCeECHHHHHhcCCCCcEEECC
Confidence            9999999765310              00                 012336778888887 77777765

Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism.

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=96.63  E-value=0.005  Score=52.88  Aligned_cols=41  Identities=17%  Similarity=0.078  Sum_probs=35.4

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ...|.|++|.|||-|.+|...++.| ...|++|.++++....
T Consensus         8 ~l~l~~~~vlVvGGG~va~rka~~L-l~~ga~V~VIsp~~~~   48 (157)
T PRK06719          8 MFNLHNKVVVIIGGGKIAYRKASGL-KDTGAFVTVVSPEICK   48 (157)
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCccCH
Confidence            3579999999999999999999987 5789999999866543

>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type

Probab=96.61  E-value=0.016  Score=54.55  Aligned_cols=78  Identities=21%  Similarity=0.160  Sum_probs=51.4

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +.|+++.|||.|.+|++++..| ...|+ +|++++|+.++ .++..+.+..    ... ...+....++.+.+.++|+|+
T Consensus       123 ~~~k~vlvlGaGGaarai~~aL-~~~G~~~i~I~nRt~~k-a~~La~~~~~----~~~-~~~~~~~~~~~~~~~~~DiVI  195 (282)
T TIGR01809       123 LAGFRGLVIGAGGTSRAAVYAL-ASLGVTDITVINRNPDK-LSRLVDLGVQ----VGV-ITRLEGDSGGLAIEKAAEVLV  195 (282)
T ss_pred             cCCceEEEEcCcHHHHHHHHHH-HHcCCCeEEEEeCCHHH-HHHHHHHhhh----cCc-ceeccchhhhhhcccCCCEEE
Confidence            5789999999999999999997 57887 69999998653 2332222110    000 000101123445668899999


Q ss_pred             EcCCCC
Q 019387          242 LHPVLD  247 (342)
Q Consensus       242 l~~pl~  247 (342)
                      .|.|..
T Consensus       196 naTp~g  201 (282)
T TIGR01809       196 STVPAD  201 (282)
T ss_pred             ECCCCC
Confidence            999974

This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.

>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]

Probab=96.60  E-value=0.011  Score=58.01  Aligned_cols=111  Identities=17%  Similarity=0.079  Sum_probs=71.0

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      ++|.|+|.|.||+.+|+.|+ .-| .+|++-||+.++..+.....    ..+-............+.+++++.|+|+.|+
T Consensus         2 ~~ilviGaG~Vg~~va~~la-~~~d~~V~iAdRs~~~~~~i~~~~----~~~v~~~~vD~~d~~al~~li~~~d~VIn~~   76 (389)
T COG1748           2 MKILVIGAGGVGSVVAHKLA-QNGDGEVTIADRSKEKCARIAELI----GGKVEALQVDAADVDALVALIKDFDLVINAA   76 (389)
T ss_pred             CcEEEECCchhHHHHHHHHH-hCCCceEEEEeCCHHHHHHHHhhc----cccceeEEecccChHHHHHHHhcCCEEEEeC
Confidence            58999999999999999986 445 89999999976532221100    0000011122233457889999999999999


Q ss_pred             CCCcccccccCHHHH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          245 VLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       245 pl~~~t~~li~~~~l-~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      |.      .++...+ +.++.|.-.++++-..--- -++-+.-++
T Consensus        77 p~------~~~~~i~ka~i~~gv~yvDts~~~~~~-~~~~~~a~~  114 (389)
T COG1748          77 PP------FVDLTILKACIKTGVDYVDTSYYEEPP-WKLDEEAKK  114 (389)
T ss_pred             Cc------hhhHHHHHHHHHhCCCEEEcccCCchh-hhhhHHHHH
Confidence            94      2333444 4557888899987655432 334443333

>PRK11891 aspartate carbamoyltransferase; Provisional

Probab=96.59  E-value=0.35  Score=48.19  Aligned_cols=103  Identities=14%  Similarity=0.246  Sum_probs=68.0

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~L~gktvgIvG~---G~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                      .+.|++|++||=   +++.++++..+ ..+ |++|.+..|..-...+...+.    +...   ...+....++++.++++
T Consensus       238 ~l~G~kIa~vGD~~~~rv~~Sl~~~l-a~~~G~~v~l~~P~~~~~~~~~~~~----~~~~---G~~v~~~~d~~eav~~A  309 (429)
T PRK11891        238 IVDGAHIALVGDLKYGRTVHSLVKLL-ALYRGLKFTLVSPPTLEMPAYIVEQ----ISRN---GHVIEQTDDLAAGLRGA  309 (429)
T ss_pred             CcCCCEEEEECcCCCChHHHHHHHHH-HHhcCCEEEEECCCccccCHHHHHH----HHhc---CCeEEEEcCHHHHhCCC
Confidence            478999999998   48999999886 455 999999887543211222111    1111   12233457999999999


Q ss_pred             CEEEEcCCCCcc----------cccccCHHHHhc-CCCCcEEEEcC
Q 019387          238 DVISLHPVLDKT----------TYHLINKERLAT-MKKEAILVNCS  272 (342)
Q Consensus       238 DiV~l~~pl~~~----------t~~li~~~~l~~-mk~ga~lINva  272 (342)
                      |+|....-..+.          ...-++++.++. .|++++|.-+.
T Consensus       310 DVVYt~~~q~er~~~~~~~~~~~~y~vt~ell~~~ak~dai~MHcL  355 (429)
T PRK11891        310 DVVYATRIQKERFADESFEGYTPDFQINQALVDAVCKPDTLIMHPL  355 (429)
T ss_pred             CEEEEcCchhhcccCHHHHHhccCCcCCHHHHhCccCCCcEEECCC
Confidence            999874422111          124568888888 88888887653

>PRK14031 glutamate dehydrogenase; Provisional

Probab=96.58  E-value=0.014  Score=58.16  Aligned_cols=121  Identities=12%  Similarity=0.124  Sum_probs=70.0

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch----------hHHHHHHhhhhhhhhccCCCCc----ccc
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYGQFLKANGEQPV----TWK  225 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~----------~~~~~~~~~~~~~~~~~~~~~~----~~~  225 (342)
                      |.+|.|++|.|.|+|++|+..|+.| ..+|++|++......          ..+. +...+.... .......    +..
T Consensus       223 g~~l~g~rVaVQGfGNVG~~aA~~L-~e~GAkVVaVSD~~G~iy~~~Gld~~~l~-~~~~~k~~~-~~~v~~~~~~~ga~  299 (444)
T PRK14031        223 GTDLKGKVCLVSGSGNVAQYTAEKV-LELGGKVVTMSDSDGYIYDPDGIDREKLD-YIMELKNLY-RGRIREYAEKYGCK  299 (444)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCeEECCCCCCHHHHH-HHHHHHhhc-CCchhhhHhhcCCE
Confidence            4579999999999999999999998 689999998443110          0010 000000000 0000000    011


Q ss_pred             ccCCHHHHh-hcCCEEEEcCCCCcccccccCHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcCCc
Q 019387          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       226 ~~~~l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~-ga-~lINvaRG~~vd~~aL~~aL~~g~i  291 (342)
                       ..+-++++ ..|||++-|.     +.+.|+++...+++. |. +++--+-| .+..++. +.|.+..|
T Consensus       300 -~i~~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~-~~L~~rgI  360 (444)
T PRK14031        300 -YVEGARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAI-KVFQDAKI  360 (444)
T ss_pred             -EcCCcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHH-HHHHHCCc
Confidence             11223332 4699998664     578999998888874 44 45555666 5666655 44544444

>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional

Probab=96.57  E-value=0.0058  Score=59.07  Aligned_cols=95  Identities=21%  Similarity=0.233  Sum_probs=60.6

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--------------------hHHHHHHhhhhhhhhccCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--------------------TRLEKFVTAYGQFLKANGE  219 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~--------------------~~~~~~~~~~~~~~~~~~~  219 (342)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|+..-                    .+.+...+.....   ...
T Consensus        20 ~~L~~~~VlIiG~GglGs~va~~La-~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~Ka~aa~~~l~~i---np~   95 (338)
T PRK12475         20 RKIREKHVLIVGAGALGAANAEALV-RAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPKAIAAKEHLRKI---NSE   95 (338)
T ss_pred             HhhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCcccccccCccccccHHHccCCccHHHHHHHHHHHH---CCC
Confidence            5789999999999999999999985 6787 7888887531                    1111110100000   000


Q ss_pred             CCc-ccc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387          220 QPV-TWK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       220 ~~~-~~~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~  260 (342)
                      ... ...   ...+++++++++|+|+.|. .+.+++.++|....+
T Consensus        96 v~i~~~~~~~~~~~~~~~~~~~DlVid~~-D~~~~r~~in~~~~~  139 (338)
T PRK12475         96 VEIVPVVTDVTVEELEELVKEVDLIIDAT-DNFDTRLLINDLSQK  139 (338)
T ss_pred             cEEEEEeccCCHHHHHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence            000 000   1135788899999999998 467888888776544

>PRK14030 glutamate dehydrogenase; Provisional

Probab=96.56  E-value=0.019  Score=57.31  Aligned_cols=122  Identities=13%  Similarity=0.108  Sum_probs=73.1

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEE--------EcCCchhH-----HHHHHhhhhhhhhc--cCCCCccc
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY--------YDLYQATR-----LEKFVTAYGQFLKA--NGEQPVTW  224 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~--------~d~~~~~~-----~~~~~~~~~~~~~~--~~~~~~~~  224 (342)
                      |.+|.|+||.|-|+|++|+..|+.| ..+|++|++        ||+..-..     +.++....+.....  .+..  +.
T Consensus       223 g~~l~g~~vaIQGfGnVG~~aA~~L-~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~--ga  299 (445)
T PRK14030        223 GIDIKGKTVAISGFGNVAWGAATKA-TELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFP--GS  299 (445)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCC--CC
Confidence            3578999999999999999999998 689999999        78553211     11111111100000  0100  11


Q ss_pred             cccCCHHHHh-hcCCEEEEcCCCCcccccccCHHHHhcCC-C-CcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          225 KRASSMDEVL-READVISLHPVLDKTTYHLINKERLATMK-K-EAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       225 ~~~~~l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk-~-ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ... +-++++ ..||+++-|.     +.+.|+.+....+. . =.+++--+-| .++.+| .+.|++..|.
T Consensus       300 ~~i-~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA-~~iL~~rGI~  362 (445)
T PRK14030        300 TFF-AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEA-IDKFIAAKQL  362 (445)
T ss_pred             EEc-CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHH-HHHHHHCCCE
Confidence            111 222332 4599998764     57889988888772 2 2366667777 455554 3667666553

>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.53  E-value=0.014  Score=58.77  Aligned_cols=118  Identities=18%  Similarity=0.203  Sum_probs=70.3

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      -+.+++|+|+|+|..|.++|+.| +..|++|.++|.++..........    +...+.   .+.......+.+.++|+|+
T Consensus        11 ~~~~~~i~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~~~~~~~~----l~~~gi---~~~~~~~~~~~~~~~dlVV   82 (458)
T PRK01710         11 FIKNKKVAVVGIGVSNIPLIKFL-VKLGAKVTAFDKKSEEELGEVSNE----LKELGV---KLVLGENYLDKLDGFDVIF   82 (458)
T ss_pred             hhcCCeEEEEcccHHHHHHHHHH-HHCCCEEEEECCCCCccchHHHHH----HHhCCC---EEEeCCCChHHhccCCEEE
Confidence            35689999999999999999997 799999999998753221110000    111111   1111122234457899998


Q ss_pred             EcCCCCcccc-----------cccCHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          242 LHPVLDKTTY-----------HLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~~pl~~~t~-----------~li~~~-~l-~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ... .-+.+.           .++++- .+ +..+...+-|-=+.|..-..+-|.+.|+.
T Consensus        83 ~Sp-gi~~~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~  141 (458)
T PRK01710         83 KTP-SMRIDSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE  141 (458)
T ss_pred             ECC-CCCCCchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence            873 322221           222222 22 22233456677778888888877777765

>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=96.50  E-value=0.014  Score=56.44  Aligned_cols=79  Identities=19%  Similarity=0.229  Sum_probs=45.6

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhh--hhhhhhc--cC--CCCccccccCCHHHHhhcCCE
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTA--YGQFLKA--NG--EQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~--~~~~~~~--~~--~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      +|||+|+|+||+.+++.+...=++++.+ +|+.+ .........  ++.....  ..  ....+.....++++++.++|+
T Consensus         3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~~~-~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDV   81 (341)
T PRK04207          3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKTKP-DYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADI   81 (341)
T ss_pred             EEEEECCCHHHHHHHHHHhcCCCcEEEEEECCCh-HHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCE
Confidence            7999999999999999874445788886 45443 211111110  1100000  00  000112223567888889999


Q ss_pred             EEEcCCC
Q 019387          240 ISLHPVL  246 (342)
Q Consensus       240 V~l~~pl  246 (342)
                      |+.|.|.
T Consensus        82 VIdaT~~   88 (341)
T PRK04207         82 VVDATPG   88 (341)
T ss_pred             EEECCCc
Confidence            9999874

>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]

Probab=96.46  E-value=0.0051  Score=59.28  Aligned_cols=68  Identities=19%  Similarity=0.331  Sum_probs=47.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ++||||||-|-.|+.++.. ++.+|.+|++.|+.+.......        .. ......+.....+.++.+.||+|+.
T Consensus         1 ~~tvgIlGGGQLgrMm~~a-a~~lG~~v~vLdp~~~~PA~~v--------a~-~~i~~~~dD~~al~ela~~~DViT~   68 (375)
T COG0026           1 MKTVGILGGGQLGRMMALA-AARLGIKVIVLDPDADAPAAQV--------AD-RVIVAAYDDPEALRELAAKCDVITY   68 (375)
T ss_pred             CCeEEEEcCcHHHHHHHHH-HHhcCCEEEEecCCCCCchhhc--------cc-ceeecCCCCHHHHHHHHhhCCEEEE
Confidence            4799999999999999998 6899999999998876432110        00 0001111122367899999999953

>PLN02342 ornithine carbamoyltransferase

Probab=96.45  E-value=0.5  Score=45.89  Aligned_cols=104  Identities=15%  Similarity=0.153  Sum_probs=66.3

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|++|+++|= .++.++++..+ ..||++|.+..|..-...+...+.    ....+.  ..+....++++.++++|+|
T Consensus       191 ~l~glkva~vGD~~nva~Sli~~~-~~~G~~v~~~~P~~~~~~~~~~~~----a~~~g~--~~~~~~~d~~eav~~aDVv  263 (348)
T PLN02342        191 RLEGTKVVYVGDGNNIVHSWLLLA-AVLPFHFVCACPKGYEPDAKTVEK----ARAAGI--SKIEITNDPAEAVKGADVV  263 (348)
T ss_pred             CcCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccccCHHHHHH----HHHhCC--CcEEEEcCHHHHhCCCCEE
Confidence            378999999986 35777777775 579999998887543221111111    011111  1233457999999999999


Q ss_pred             EEcC----CCCcc--------cccccCHHHHhcCCCCcEEEEcC
Q 019387          241 SLHP----VLDKT--------TYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~~----pl~~~--------t~~li~~~~l~~mk~ga~lINva  272 (342)
                      ..-.    -..++        ...-++++.++.+|++++|.-+.
T Consensus       264 y~~~W~s~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL  307 (348)
T PLN02342        264 YTDVWASMGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL  307 (348)
T ss_pred             EECCccccccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence            8753    11111        12566888888888888776664

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=96.42  E-value=0.015  Score=46.39  Aligned_cols=84  Identities=15%  Similarity=0.120  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccccc
Q 019387          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (342)
Q Consensus       175 ~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li  254 (342)
                      .-+..+++.| +..|++|.+|||............           ..++....++++.++.+|+|+++.+- ++-+.+-
T Consensus        17 Sp~~~l~~~L-~~~g~~V~~~DP~v~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~D~vvl~t~h-~~f~~l~   83 (106)
T PF03720_consen   17 SPALELIEEL-KERGAEVSVYDPYVDEEEIKELGK-----------LEGVEVCDDLEEALKGADAVVLATDH-DEFRELD   83 (106)
T ss_dssp             -HHHHHHHHH-HHTT-EEEEE-TTSHHHHHHHHCH-----------HHCEEEESSHHHHHTTESEEEESS---GGGGCCG
T ss_pred             CHHHHHHHHH-HHCCCEEEEECCccChHHHHhhCC-----------ccceEEecCHHHHhcCCCEEEEEecC-HHHhccC
Confidence            3456788887 788999999999986542221000           01223356899999999999999873 4444433


Q ss_pred             CHHHHhcCCCCcEEEEc
Q 019387          255 NKERLATMKKEAILVNC  271 (342)
Q Consensus       255 ~~~~l~~mk~ga~lINv  271 (342)
                      -......|+++.++|++
T Consensus        84 ~~~~~~~~~~~~~iiD~  100 (106)
T PF03720_consen   84 WEEIAKLMRKPPVIIDG  100 (106)
T ss_dssp             HHHHHHHSCSSEEEEES
T ss_pred             HHHHHHhcCCCCEEEEC
Confidence            34555778889999997

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PRK06223 malate dehydrogenase; Reviewed

Probab=96.40  E-value=0.02  Score=54.37  Aligned_cols=76  Identities=14%  Similarity=0.332  Sum_probs=45.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      ++|+|||.|.+|..+|..++. +++ +|..+|...+.......+.... ..... .........+.+ .+++||+|+++.
T Consensus         3 ~KI~VIGaG~vG~~ia~~la~~~~~-ev~L~D~~~~~~~~~~~dl~~~-~~~~~-~~~~i~~~~d~~-~~~~aDiVii~~   78 (307)
T PRK06223          3 KKISIIGAGNVGATLAHLLALKELG-DVVLFDIVEGVPQGKALDIAEA-APVEG-FDTKITGTNDYE-DIAGSDVVVITA   78 (307)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCe-EEEEEECCCchhHHHHHHHHhh-hhhcC-CCcEEEeCCCHH-HHCCCCEEEECC
Confidence            589999999999999998752 234 9999999664321111111100 00001 111222234565 478999999986


Q ss_pred             C
Q 019387          245 V  245 (342)
Q Consensus       245 p  245 (342)
                      .
T Consensus        79 ~   79 (307)
T PRK06223         79 G   79 (307)
T ss_pred             C
Confidence            3

>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase

Probab=96.39  E-value=0.0054  Score=60.11  Aligned_cols=93  Identities=22%  Similarity=0.264  Sum_probs=53.3

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCC--CccccccCCHHHHhhcCCEEEEcC
Q 019387          168 VGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       168 vgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      |+|+|.|.+|+.+++.|++..+. +|++.|++.+.. ++..+..    ......  ........+|+++++++|+|+.|+
T Consensus         1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~-~~~~~~~----~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~   75 (386)
T PF03435_consen    1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKA-ERLAEKL----LGDRVEAVQVDVNDPESLAELLRGCDVVINCA   75 (386)
T ss_dssp             EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHH-HHHHT------TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-S
T ss_pred             CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHH-HHHHhhc----cccceeEEEEecCCHHHHHHHHhcCCEEEECC
Confidence            78999999999999998765566 899999988642 2211100    000000  111112335888999999999999


Q ss_pred             CCCcccccccCHHHHhc-CCCCcEEEEc
Q 019387          245 VLDKTTYHLINKERLAT-MKKEAILVNC  271 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~-mk~ga~lINv  271 (342)
                      |-.      .+...++. ++.|.-.||+
T Consensus        76 gp~------~~~~v~~~~i~~g~~yvD~   97 (386)
T PF03435_consen   76 GPF------FGEPVARACIEAGVHYVDT   97 (386)
T ss_dssp             SGG------GHHHHHHHHHHHT-EEEES
T ss_pred             ccc------hhHHHHHHHHHhCCCeecc
Confidence            732      23332222 2456667773

Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.

>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain

Probab=96.39  E-value=0.011  Score=48.22  Aligned_cols=95  Identities=11%  Similarity=0.099  Sum_probs=52.8

Q ss_pred             eEEEEe-cCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhccCCCCc--cccccCCHHHHhhcCCEEEE
Q 019387          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       167 tvgIvG-~G~IG~~vA~~l~~afg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ++||+| .|.+|+.+++.|.+.=+.++.+. ++..+ ..+.....+.      .....  ......+++  ..++|+|++
T Consensus         1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~DvV~~   71 (122)
T smart00859        1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARS-AGKRVSEAGP------HLKGEVVLELEPEDFE--ELAVDIVFL   71 (122)
T ss_pred             CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhh-cCcCHHHHCc------ccccccccccccCChh--hcCCCEEEE
Confidence            589999 59999999998743236777765 43321 1111100110      00000  000112333  258999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      |+|... +...+. .....+++|.++|+++
T Consensus        72 ~~~~~~-~~~~~~-~~~~~~~~g~~viD~s   99 (122)
T smart00859       72 ALPHGV-SKEIAP-LLPKAAEAGVKVIDLS   99 (122)
T ss_pred             cCCcHH-HHHHHH-HHHhhhcCCCEEEECC
Confidence            999643 333222 2345578999999997

The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=96.36  E-value=0.36  Score=53.20  Aligned_cols=109  Identities=10%  Similarity=0.091  Sum_probs=68.4

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhh-----------------hh-h-hccC-CCCc
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-----------------QF-L-KANG-EQPV  222 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~-----------------~~-~-~~~~-~~~~  222 (342)
                      +.-.++.|+|.|++|+..++.+ .++|++ . .++  + ++....+.+.                 .+ . ...+ ....
T Consensus       201 v~P~~vVi~G~G~Vg~gA~~i~-~~lg~~-~-v~~--~-~l~~l~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~f  274 (1042)
T PLN02819        201 ICPLVFVFTGSGNVSQGAQEIF-KLLPHT-F-VEP--S-KLPELKGISQNKISTKRVYQVYGCVVTSQDMVEHKDPSKQF  274 (1042)
T ss_pred             CCCeEEEEeCCchHHHHHHHHH-hhcCCC-c-cCH--H-HHHHHHHhhcCCccccccceeeeeecChHHHhhccCCcccc
Confidence            4457899999999999999986 799888 2 232  2 2222111000                 00 0 0000 0000


Q ss_pred             --------cccccCC-HHHHhhcCCEEEEcCCCCcccccccCHH-HHhcCCCCc----EEEEcC--CCccc
Q 019387          223 --------TWKRASS-MDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEA----ILVNCS--RGPVI  277 (342)
Q Consensus       223 --------~~~~~~~-l~~ll~~aDiV~l~~pl~~~t~~li~~~-~l~~mk~ga----~lINva--RG~~v  277 (342)
                              .-.+... +++.+..+|+|+.|+--.+.+..+|..+ ..+.||+|.    +++|++  -|+.|
T Consensus       275 ~~~~y~~~Pe~y~s~F~~~~~~~advlIn~i~~~~~~P~lvt~~~~~~~mk~G~~~l~vI~DVs~D~gG~i  345 (1042)
T PLN02819        275 DKADYYAHPEHYNPVFHEKIAPYASVIVNCMYWEKRFPRLLTTKQLQDLTRKGGCPLVGVCDITCDIGGSI  345 (1042)
T ss_pred             chhhhccCchhccchhHHHhHhhCCEEEeeeecCCCCCceeCHHHHHHhhcCCCccceEEEEEccCCCCCe
Confidence                    0001122 3578899999999997777889999998 778999998    899876  44443

>PTZ00082 L-lactate dehydrogenase; Provisional

Probab=96.35  E-value=0.021  Score=54.78  Aligned_cols=129  Identities=16%  Similarity=0.206  Sum_probs=70.6

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +..++|+|||.|.+|..+|..++ ..| ++++.+|..++.......+.... .. .......+....+.+ .+++||+|+
T Consensus         4 ~~~~KI~IIGaG~vG~~ia~~la-~~gl~~i~LvDi~~~~~~~~~ld~~~~-~~-~~~~~~~I~~~~d~~-~l~~aDiVI   79 (321)
T PTZ00082          4 IKRRKISLIGSGNIGGVMAYLIV-LKNLGDVVLFDIVKNIPQGKALDISHS-NV-IAGSNSKVIGTNNYE-DIAGSDVVI   79 (321)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCCchhhHHHHHHHhh-hh-ccCCCeEEEECCCHH-HhCCCCEEE
Confidence            34579999999999999998864 445 48999999876421111111100 00 011112233335665 569999999


Q ss_pred             EcCCCCc----------------ccccccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH--cCCceEEE
Q 019387          242 LHPVLDK----------------TTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLK--QNPMFRVG  295 (342)
Q Consensus       242 l~~pl~~----------------~t~~li~~--~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~--~g~i~~aa  295 (342)
                      ++.-...                ++..++.+  ..+....|.+.+||++--.-+-...+.+...  ..++.|.+
T Consensus        80 ~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~di~t~~~~~~sg~p~~rviGlg  153 (321)
T PTZ00082         80 VTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLDVMVKLLQEHSGLPKNKVCGMA  153 (321)
T ss_pred             ECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHhcCCChhhEEEec
Confidence            9763211                11111211  2344445677999998433223334444331  23566666

>PRK00048 dihydrodipicolinate reductase; Provisional

Probab=96.32  E-value=0.019  Score=53.34  Aligned_cols=66  Identities=21%  Similarity=0.261  Sum_probs=45.8

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|+|+|+ |+||+.+++.+.+.-++++.+ +|+.++... ..             ...+.....++++++..+|+|+.+
T Consensus         2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~-~~-------------~~~~i~~~~dl~~ll~~~DvVid~   67 (257)
T PRK00048          2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLV-GQ-------------GALGVAITDDLEAVLADADVLIDF   67 (257)
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccc-cc-------------CCCCccccCCHHHhccCCCEEEEC
Confidence            37999998 999999999864334788775 777654211 00             111223457899999889999977


Q ss_pred             CC
Q 019387          244 PV  245 (342)
Q Consensus       244 ~p  245 (342)
                      +|
T Consensus        68 t~   69 (257)
T PRK00048         68 TT   69 (257)
T ss_pred             CC
Confidence            75

>COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=96.31  E-value=0.037  Score=53.88  Aligned_cols=127  Identities=18%  Similarity=0.241  Sum_probs=93.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh---hcCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll---~~aDiV~l  242 (342)
                      ..+|+||+|-||+.+|..+ ..-|.+|.+|+|..+. .+.+.+..       .. ........+++|++   +.=.-|++
T Consensus         4 ~~iGviGLaVMG~NLaLNi-~~~G~~VavyNRt~~k-td~f~~~~-------~~-~k~i~~~~sieefV~~Le~PRkI~l   73 (473)
T COG0362           4 ADIGVIGLAVMGSNLALNI-ADHGYTVAVYNRTTEK-TDEFLAER-------AK-GKNIVPAYSIEEFVASLEKPRKILL   73 (473)
T ss_pred             cceeeEehhhhhHHHHHHH-HhcCceEEEEeCCHHH-HHHHHHhC-------cc-CCCccccCcHHHHHHHhcCCceEEE
Confidence            4699999999999999997 5789999999998754 44444321       11 11233446777765   44555665


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      .+-...-.... -++.+..|-+|=++|+-+-..--|+.--.++|.+..|.+.+.-|--.|-
T Consensus        74 MVkAG~~VD~~-I~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEe  133 (473)
T COG0362          74 MVKAGTPVDAV-IEQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEE  133 (473)
T ss_pred             EEecCCcHHHH-HHHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEecccccccc
Confidence            55432111222 2456778889999999999999999999999999999999999998887

>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional

Probab=96.30  E-value=0.041  Score=54.91  Aligned_cols=124  Identities=19%  Similarity=0.169  Sum_probs=69.2

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCc---------hhHHHHHHh---hhhhhhhccCCCCccccc
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRLEKFVT---AYGQFLKANGEQPVTWKR  226 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~---------~~~~~~~~~---~~~~~~~~~~~~~~~~~~  226 (342)
                      +.+|.|+||.|-|+|++|+..|+.| ..+|++|+ +.|...         ...+....+   .....+........+...
T Consensus       232 ~~~l~Gk~VaVqG~GnVg~~aa~~L-~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~  310 (454)
T PTZ00079        232 NDSLEGKTVVVSGSGNVAQYAVEKL-LQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKY  310 (454)
T ss_pred             CCCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEE
Confidence            3578999999999999999999997 68999999 445440         111110000   000000000000001111


Q ss_pred             cCCHHHHh-hcCCEEEEcCCCCcccccccCHHHHhcC-CCCcEEE-EcCCCcccCHHHHHHHHHcCCce
Q 019387          227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATM-KKEAILV-NCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       227 ~~~l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~m-k~ga~lI-NvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      . +-++++ -.||+++-|.     +.+.|+.+....+ +.++.+| --+-+++ ..+ -.+.|++..|.
T Consensus       311 ~-~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~-t~e-A~~~L~~~GI~  371 (454)
T PTZ00079        311 V-PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT-TIE-ATHLFKKNGVI  371 (454)
T ss_pred             e-CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC-CHH-HHHHHHHCCcE
Confidence            1 112222 4699998774     5788988887766 5555555 4556665 444 44666665543

>PRK08192 aspartate carbamoyltransferase; Provisional

Probab=96.27  E-value=0.58  Score=45.27  Aligned_cols=103  Identities=11%  Similarity=0.209  Sum_probs=63.3

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      .+.|++|+++|=   +++..+.+..++.-+|++|.+..|..-...+...+.    ....   ...+....++++.++++|
T Consensus       156 ~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~----~~~~---g~~~~~~~d~~ea~~~aD  228 (338)
T PRK08192        156 GIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISD----IENA---GHKITITDQLEGNLDKAD  228 (338)
T ss_pred             CcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHH----HHHc---CCeEEEEcCHHHHHccCC
Confidence            478999999998   588888887754345999998887542211121111    1111   122334579999999999


Q ss_pred             EEEEcCCCCcc-----------cccccCHHHH-hcCCCCcEEEEc
Q 019387          239 VISLHPVLDKT-----------TYHLINKERL-ATMKKEAILVNC  271 (342)
Q Consensus       239 iV~l~~pl~~~-----------t~~li~~~~l-~~mk~ga~lINv  271 (342)
                      +|..-.-..++           ....++++.+ +.+|++++|.-+
T Consensus       229 vvyt~~~q~e~~~~~~~~~~~~~~y~v~~e~l~~~a~~~ai~mHc  273 (338)
T PRK08192        229 ILYLTRIQEERFPSQEEANKYRGKFRLNQSIYTQHCKSNTVIMHP  273 (338)
T ss_pred             EEEEcCcccccccchHHHHHhhhccccCHHHHHhhhCCCCEEECC
Confidence            99874211111           1134556666 347777777655

>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A

Probab=96.25  E-value=0.0073  Score=50.65  Aligned_cols=86  Identities=23%  Similarity=0.314  Sum_probs=50.7

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 019387          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (342)
Q Consensus       168 vgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~  247 (342)
                      +-|+|-|.+|+++++. ++.+|++|+++|++++.                                ++.++-+. +.+. 
T Consensus         1 L~I~GaG~va~al~~l-a~~lg~~v~v~d~r~e~--------------------------------~~~~~~~~-~~~~-   45 (136)
T PF13478_consen    1 LVIFGAGHVARALARL-AALLGFRVTVVDPRPER--------------------------------FPEADEVI-CIPP-   45 (136)
T ss_dssp             EEEES-STCHHHHHHH-HHHCTEEEEEEES-CCC---------------------------------TTSSEEE-CSHH-
T ss_pred             CEEEeCcHHHHHHHHH-HHhCCCEEEEEcCCccc--------------------------------cCCCCccE-ecCh-
Confidence            4689999999999998 58999999999987531                                11233322 2221 


Q ss_pred             cccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 019387          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       248 ~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaL  296 (342)
                      ++.   .  +.+ .+.++.++| ++++.-.|.+.|.++|++ ..+..|+
T Consensus        46 ~~~---~--~~~-~~~~~t~Vv-~th~h~~D~~~L~~~l~~-~~~YiG~   86 (136)
T PF13478_consen   46 DDI---L--EDL-EIDPNTAVV-MTHDHELDAEALEAALAS-PARYIGL   86 (136)
T ss_dssp             HHH---H--HHC--S-TT-EEE---S-CCCHHHHHHHHTTS-S-SEEEE
T ss_pred             HHH---H--hcc-CCCCCeEEE-EcCCchhHHHHHHHHHcC-CCCEEEe
Confidence            000   0  111 455666666 889999999999999887 4555554

>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA

Probab=96.23  E-value=0.012  Score=53.48  Aligned_cols=104  Identities=22%  Similarity=0.225  Sum_probs=63.3

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh------------------HHHHHHhhhhhhhhccCCCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|+ ++..+|...-.                  +.+...+...+.   .....
T Consensus        17 ~~L~~~~VlivG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~---np~~~   92 (228)
T cd00757          17 EKLKNARVLVVGAGGLGSPAAEYLA-AAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEAAAERLRAI---NPDVE   92 (228)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHHHHHHHHHh---CCCCE
Confidence            5688999999999999999999985 6787 67777654311                  000000000000   00000


Q ss_pred             c-ccc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          222 V-TWK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       222 ~-~~~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      . ...   ...++++++.++|+|+.|+. +.+++..+++...+.   +.-+|..+
T Consensus        93 i~~~~~~i~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~---~ip~i~~g  143 (228)
T cd00757          93 IEAYNERLDAENAEELIAGYDLVLDCTD-NFATRYLINDACVKL---GKPLVSGA  143 (228)
T ss_pred             EEEecceeCHHHHHHHHhCCCEEEEcCC-CHHHHHHHHHHHHHc---CCCEEEEE
Confidence            0 000   11345678899999999986 677888888765543   44556553

Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).

>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p

Probab=96.16  E-value=0.025  Score=58.59  Aligned_cols=62  Identities=23%  Similarity=0.315  Sum_probs=45.3

Q ss_pred             CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcc-cccccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEc
Q 019387          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLF-VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYD  196 (342)
Q Consensus       119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~-~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d  196 (342)
                      .....||.++-+=|.+.|                |.-... ....|.+.+|.|||.|.+|..+|+.| .+.|+ +++.+|
T Consensus       307 dP~~la~~avdlnlkLmk----------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~L-a~~GVg~ItlVD  369 (664)
T TIGR01381       307 DPKRLAERSVDLNLKLMK----------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCL-IGWGVRHITFVD  369 (664)
T ss_pred             CHHHHHHHHHHHHHHHHh----------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHH-HHcCCCeEEEEc
Confidence            456678888877776664                332111 12568899999999999999999998 48888 566777


Q ss_pred             C
Q 019387          197 L  197 (342)
Q Consensus       197 ~  197 (342)
                      .
T Consensus       370 ~  370 (664)
T TIGR01381       370 N  370 (664)
T ss_pred             C
Confidence            3

This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=96.14  E-value=0.071  Score=50.56  Aligned_cols=107  Identities=18%  Similarity=0.161  Sum_probs=70.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .|++++|||--.=-..++++| ...|++|..+.-....                 ....+.....+.+++++++|+|++-
T Consensus         1 ~~~~~~v~ggd~r~~~~~~~l-~~~G~~v~~~g~~~~~-----------------~~~~g~~~~~~~~~~~~~ad~ii~~   62 (296)
T PRK08306          1 TGKHIAVIGGDARQLELIRKL-VELGAKVSLVGFDQLD-----------------HGFTGATKSSSLEEALSDVDVIILP   62 (296)
T ss_pred             CCcEEEEEcCcHHHHHHHHHH-HHCCCEEEEEeccccc-----------------cccCCceeeccHHHHhccCCEEEEC
Confidence            378999999998888999998 6789998864321110                 0011222345678889999999998


Q ss_pred             CCCCccc---cc-------ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387          244 PVLDKTT---YH-------LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       244 ~pl~~~t---~~-------li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~  293 (342)
                      +|.+.+.   +.       -++.+.+++||+|..++ ++.+.   .. +-+.+++.++..
T Consensus        63 ~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~~~~~v~-~G~~~---~~-~~~~~~~~gi~~  117 (296)
T PRK08306         63 VPGTNDEGNVDTVFSNEKLVLTEELLELTPEHCTIF-SGIAN---PY-LKELAKETNRKL  117 (296)
T ss_pred             CccccCCceeeccccccCCcchHHHHHhcCCCCEEE-EecCC---HH-HHHHHHHCCCeE
Confidence            8865432   11       23678999999998444 34433   22 445566666654

>PRK08644 thiamine biosynthesis protein ThiF; Provisional

Probab=96.13  E-value=0.021  Score=51.47  Aligned_cols=98  Identities=18%  Similarity=0.232  Sum_probs=58.1

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch-----------------hHHHHHHhhhhhhhhccCCCCc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA-----------------TRLEKFVTAYGQFLKANGEQPV  222 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~  222 (342)
                      ..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|...-                 .+.+..........   .....
T Consensus        24 ~~L~~~~V~ViG~GglGs~ia~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~~ln---p~v~v   99 (212)
T PRK08644         24 EKLKKAKVGIAGAGGLGSNIAVALA-RSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLLEIN---PFVEI   99 (212)
T ss_pred             HHHhCCCEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHHHHC---CCCEE
Confidence            5688999999999999999999985 5577 5888887621                 11111111110000   00000


Q ss_pred             cc-c---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCC
Q 019387          223 TW-K---RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (342)
Q Consensus       223 ~~-~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk  263 (342)
                      .. .   ...+++++++++|+|+.|+. +.+++..++....+..+
T Consensus       100 ~~~~~~i~~~~~~~~~~~~DvVI~a~D-~~~~r~~l~~~~~~~~~  143 (212)
T PRK08644        100 EAHNEKIDEDNIEELFKDCDIVVEAFD-NAETKAMLVETVLEHPG  143 (212)
T ss_pred             EEEeeecCHHHHHHHHcCCCEEEECCC-CHHHHHHHHHHHHHhCC
Confidence            00 0   11235578899999999864 56677777765544433

>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]

Probab=96.12  E-value=0.015  Score=52.42  Aligned_cols=96  Identities=17%  Similarity=0.176  Sum_probs=65.6

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..|.||+|.|||-|.+|..=|+.| -..|++|+++.+.....+..+.+.       .. ..+ .......+++ ..+++|
T Consensus         8 ~~l~~k~VlvvGgG~va~rKa~~l-l~~ga~v~Vvs~~~~~el~~~~~~-------~~-i~~-~~~~~~~~~~-~~~~lv   76 (210)
T COG1648           8 LDLEGKKVLVVGGGSVALRKARLL-LKAGADVTVVSPEFEPELKALIEE-------GK-IKW-IEREFDAEDL-DDAFLV   76 (210)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HhcCCEEEEEcCCccHHHHHHHHh-------cC-cch-hhcccChhhh-cCceEE
Confidence            468999999999999999999998 478999999998875444443321       11 111 0112234444 449999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      +.+++.     .-+|+..+..+++-.++||+.
T Consensus        77 iaAt~d-----~~ln~~i~~~a~~~~i~vNv~  103 (210)
T COG1648          77 IAATDD-----EELNERIAKAARERRILVNVV  103 (210)
T ss_pred             EEeCCC-----HHHHHHHHHHHHHhCCceecc
Confidence            999874     345566666676666888873

>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A

Probab=96.11  E-value=0.023  Score=46.26  Aligned_cols=101  Identities=13%  Similarity=0.191  Sum_probs=65.2

Q ss_pred             CeEEEEe----cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          166 QTVGVIG----AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvgIvG----~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      |+|+|||    -|..|..+.+.| +..|.+|+..++.....                   .+...+.+++|.-...|+++
T Consensus         1 ksiAVvGaS~~~~~~g~~v~~~l-~~~G~~v~~Vnp~~~~i-------------------~G~~~y~sl~e~p~~iDlav   60 (116)
T PF13380_consen    1 KSIAVVGASDNPGKFGYRVLRNL-KAAGYEVYPVNPKGGEI-------------------LGIKCYPSLAEIPEPIDLAV   60 (116)
T ss_dssp             -EEEEET--SSTTSHHHHHHHHH-HHTT-EEEEESTTCSEE-------------------TTEE-BSSGGGCSST-SEEE
T ss_pred             CEEEEEcccCCCCChHHHHHHHH-HhCCCEEEEECCCceEE-------------------CcEEeeccccCCCCCCCEEE
Confidence            6899999    789999999998 67999999998876321                   12334678888447899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~  293 (342)
                      +++|. +.+..++.+  +..+..+.+++..+    ..++++.+.+++..+.-
T Consensus        61 v~~~~-~~~~~~v~~--~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi~v  105 (116)
T PF13380_consen   61 VCVPP-DKVPEIVDE--AAALGVKAVWLQPG----AESEELIEAAREAGIRV  105 (116)
T ss_dssp             E-S-H-HHHHHHHHH--HHHHT-SEEEE-TT----S--HHHHHHHHHTT-EE
T ss_pred             EEcCH-HHHHHHHHH--HHHcCCCEEEEEcc----hHHHHHHHHHHHcCCEE
Confidence            99983 334444433  23345678888887    66677888888776653

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=96.09  E-value=0.0083  Score=50.51  Aligned_cols=122  Identities=17%  Similarity=0.161  Sum_probs=68.8

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccC-CCCcccc-ccCCHHHHhhcCCEEEEcCC
Q 019387          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWK-RASSMDEVLREADVISLHPV  245 (342)
Q Consensus       168 vgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~l~~ll~~aDiV~l~~p  245 (342)
                      |.|+|.|.||..+|.+|+ ..|.+|..+++..  +.+.... .+..+.... ....... ......+.....|+|++|+.
T Consensus         1 I~I~G~GaiG~~~a~~L~-~~g~~V~l~~r~~--~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vK   76 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLA-QAGHDVTLVSRSP--RLEAIKE-QGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVK   76 (151)
T ss_dssp             EEEESTSHHHHHHHHHHH-HTTCEEEEEESHH--HHHHHHH-HCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SS
T ss_pred             CEEECcCHHHHHHHHHHH-HCCCceEEEEccc--cHHhhhh-eeEEEEecccceecccccccCcchhccCCCcEEEEEec
Confidence            689999999999999984 5899999999876  2222111 111111111 0000011 11122345688999999986


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaL  296 (342)
                      . .++...+.. .-...++++.++-.--| +-.++.|.+.+...++.++..
T Consensus        77 a-~~~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g~~  124 (151)
T PF02558_consen   77 A-YQLEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGGVT  124 (151)
T ss_dssp             G-GGHHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEEEE
T ss_pred             c-cchHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEEEE
Confidence            4 344554444 33445566666666554 344566666664445554443

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=96.08  E-value=0.011  Score=53.78  Aligned_cols=76  Identities=20%  Similarity=0.263  Sum_probs=49.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh-hhccCCCCccccccCCHHHH-hhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF-LKANGEQPVTWKRASSMDEV-LREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l-l~~aDiV~l~  243 (342)
                      +++.|+|+|..|..+|+.| ...|.+|+..|..++...+.....++.. ...      .......|+++ +.++|.++.+
T Consensus         1 m~iiIiG~G~vG~~va~~L-~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~g------d~t~~~~L~~agi~~aD~vva~   73 (225)
T COG0569           1 MKIIIIGAGRVGRSVAREL-SEEGHNVVLIDRDEERVEEFLADELDTHVVIG------DATDEDVLEEAGIDDADAVVAA   73 (225)
T ss_pred             CEEEEECCcHHHHHHHHHH-HhCCCceEEEEcCHHHHHHHhhhhcceEEEEe------cCCCHHHHHhcCCCcCCEEEEe
Confidence            4789999999999999998 6899999999998765433111111000 000      00112345555 7889999998


Q ss_pred             CCCCc
Q 019387          244 PVLDK  248 (342)
Q Consensus       244 ~pl~~  248 (342)
                      ...+.
T Consensus        74 t~~d~   78 (225)
T COG0569          74 TGNDE   78 (225)
T ss_pred             eCCCH
Confidence            87543

>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=96.07  E-value=0.054  Score=54.09  Aligned_cols=118  Identities=23%  Similarity=0.292  Sum_probs=72.2

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +.+|++.|+|.|.+|.++|+.| ...|++|.++|+..........+.    +...+.   .+......++....+|+|+.
T Consensus         3 ~~~k~v~iiG~g~~G~~~A~~l-~~~G~~V~~~d~~~~~~~~~~~~~----l~~~~~---~~~~~~~~~~~~~~~d~vv~   74 (450)
T PRK14106          3 LKGKKVLVVGAGVSGLALAKFL-KKLGAKVILTDEKEEDQLKEALEE----LGELGI---ELVLGEYPEEFLEGVDLVVV   74 (450)
T ss_pred             cCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchHHHHHHHHH----HHhcCC---EEEeCCcchhHhhcCCEEEE
Confidence            5789999999999999999998 588999999999763332221111    111111   11112223456678999988


Q ss_pred             cCCCCcccccc----------cCH-HH-HhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          243 HPVLDKTTYHL----------INK-ER-LATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       243 ~~pl~~~t~~l----------i~~-~~-l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      +.-..+.+.-+          +.. +. ....+...+-|-=+.|..-..+-|.+.|+.
T Consensus        75 ~~g~~~~~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~  132 (450)
T PRK14106         75 SPGVPLDSPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN  132 (450)
T ss_pred             CCCCCCCCHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            76543332211          111 11 222233355566678998888888888865

>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1

Probab=96.07  E-value=0.087  Score=49.40  Aligned_cols=158  Identities=22%  Similarity=0.220  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcC----Cc-------E
Q 019387          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N  191 (342)
Q Consensus       123 vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~af----g~-------~  191 (342)
                      +|=.+++-+++.+|-                     .|..|...+|.|+|.|.-|-.+|+.|. ..    |.       +
T Consensus         4 Ta~V~lAgllnAlk~---------------------~g~~l~d~~iv~~GAGsAg~gia~ll~-~~~~~~G~~~eeA~~~   61 (279)
T cd05312           4 TAAVALAGLLAALRI---------------------TGKPLSDQRILFLGAGSAGIGIADLIV-SAMVREGLSEEEARKK   61 (279)
T ss_pred             HHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHHcCCChhhccCe
Confidence            455667777777763                     235688999999999999999999874 43    66       7


Q ss_pred             EEEEcCCch---h--HHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEEcCCCCcccccccCHHHHhcCC-
Q 019387          192 LIYYDLYQA---T--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK-  263 (342)
Q Consensus       192 V~~~d~~~~---~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l~~pl~~~t~~li~~~~l~~mk-  263 (342)
                      ++.+|++.-   .  .+..+...|..   . ...    ....+|.|+++  +.|+++=+--    .-++|+++.++.|. 
T Consensus        62 i~~vD~~Gll~~~r~~l~~~~~~~a~---~-~~~----~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~  129 (279)
T cd05312          62 IWLVDSKGLLTKDRKDLTPFKKPFAR---K-DEE----KEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAK  129 (279)
T ss_pred             EEEEcCCCeEeCCCCcchHHHHHHHh---h-cCc----ccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHh
Confidence            888897731   1  12233333321   1 110    12368999999  8899986531    24899999999998 


Q ss_pred             --CCcEEEEcCCCcc---cCHHHHHHHHHcCC-ceEEEEe---c----CCCCC---CCcccccccccc
Q 019387          264 --KEAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGLD---V----FEVTE---LGFSSFKHISTQ  315 (342)
Q Consensus       264 --~ga~lINvaRG~~---vd~~aL~~aL~~g~-i~~aaLD---V----~~~EP---~~~~~tPhia~~  315 (342)
                        +..++.=.|.-..   +..++.+++ .+|+ |.+.+.-   |    -...|   .|.++.|-|.-.
T Consensus       130 ~~~~PIIFaLSNPt~~~E~~pe~a~~~-t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglG  196 (279)
T cd05312         130 SNERPIIFALSNPTSKAECTAEDAYKW-TDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLG  196 (279)
T ss_pred             cCCCCEEEECCCcCCccccCHHHHHHh-hcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhH
Confidence              8889988887755   233444443 2355 6665531   1    12223   677777777433

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH

>PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional

Probab=96.06  E-value=0.53  Score=44.98  Aligned_cols=95  Identities=15%  Similarity=0.160  Sum_probs=63.3

Q ss_pred             cCCCeEEEEec---CHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       163 L~gktvgIvG~---G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      +.|.+|+++|=   +++.++.+..+ ..||+ +|.+..|..-.  +.            ......+....++++.++++|
T Consensus       155 l~g~~va~vGD~~~~rv~~Sl~~~~-a~~g~~~v~~~~P~~~~--p~------------~~~~~~~~~~~d~~ea~~~aD  219 (310)
T PRK13814        155 WNKLCVTIIGDIRHSRVANSLMDGL-VTMGVPEIRLVGPSSLL--PD------------KVGNDSIKKFTELKPSLLNSD  219 (310)
T ss_pred             cCCcEEEEECCCCCCcHHHHHHHHH-HHcCCCEEEEeCCcccC--cC------------ccccceEEEEcCHHHHhCCCC
Confidence            67999999998   59999999986 58999 99988775311  00            000112334578999999999


Q ss_pred             EEEEcCCCCc-----c----c--ccccCHHHHhcCCCCcEEEEcC
Q 019387          239 VISLHPVLDK-----T----T--YHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       239 iV~l~~pl~~-----~----t--~~li~~~~l~~mk~ga~lINva  272 (342)
                      +|...--..+     .    -  ...++++.++.+|++++|.=+.
T Consensus       220 vvy~~~~~~er~~~~~~~~~~~~~y~v~~~~l~~a~~~~i~mHcL  264 (310)
T PRK13814        220 VIVTLRLQKERHDNSVDIDAFRGSFRLTPEKLYSAKPDAIVMHPG  264 (310)
T ss_pred             EEEECccccccccchhHHHHhCCCcccCHHHHHhcCCCCEEECCC
Confidence            9976322111     0    0  2445667777777777766653

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=96.06  E-value=0.053  Score=52.94  Aligned_cols=120  Identities=16%  Similarity=0.218  Sum_probs=82.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHh--------hhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT--------AYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                      .+|.|+|.|-+|-..+..|+ .+|-+|+++|..+++ .+....        ...+++.+..... ......+.++.++.+
T Consensus         1 MkI~viGtGYVGLv~g~~lA-~~GHeVv~vDid~~K-V~~ln~g~~PI~EpgLe~ll~~~~~~g-Rl~fTtd~~~a~~~a   77 (414)
T COG1004           1 MKITVIGTGYVGLVTGACLA-ELGHEVVCVDIDESK-VELLNKGISPIYEPGLEELLKENLASG-RLRFTTDYEEAVKDA   77 (414)
T ss_pred             CceEEECCchHHHHHHHHHH-HcCCeEEEEeCCHHH-HHHHhCCCCCCcCccHHHHHHhccccC-cEEEEcCHHHHHhcC
Confidence            37899999999999999984 899999999987653 222111        1111222211111 123346788889999


Q ss_pred             CEEEEcCCCCcccccccCH--------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          238 DVISLHPVLDKTTYHLINK--------ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~--------~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      |++++|+|..+...|-+|-        +..+.++..+++|+=|.-.+=..+.+.+-+.+
T Consensus        78 dv~fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~  136 (414)
T COG1004          78 DVVFIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRAKIRE  136 (414)
T ss_pred             CEEEEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHHHHHh
Confidence            9999999976665666653        45566776699999888777666666665544

>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases

Probab=96.01  E-value=0.041  Score=52.65  Aligned_cols=122  Identities=17%  Similarity=0.244  Sum_probs=67.6

Q ss_pred             CeEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccC-C-CCccccccCCHHHHhhcCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-E-QPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .+|+|||.|++|..+|-.|+ ++..-++..||...+.......+     +.... . .........+.++ +++||+|++
T Consensus         4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~D-----l~~~~~~~~~~~v~~~~dy~~-~~~adivvi   77 (312)
T cd05293           4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMD-----LQHGSAFLKNPKIEADKDYSV-TANSKVVIV   77 (312)
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHH-----HHHhhccCCCCEEEECCCHHH-hCCCCEEEE
Confidence            48999999999999998764 24455899999876432111111     11100 0 0012222245665 799999998


Q ss_pred             cCCCCc---ccc-ccc-------C--HHHHhcCCCCcEEEEcCCCcccCH--HHHHHH--HHcCCceEEE
Q 019387          243 HPVLDK---TTY-HLI-------N--KERLATMKKEAILVNCSRGPVIDE--VALVEH--LKQNPMFRVG  295 (342)
Q Consensus       243 ~~pl~~---~t~-~li-------~--~~~l~~mk~ga~lINvaRG~~vd~--~aL~~a--L~~g~i~~aa  295 (342)
                      +.-...   +|+ .++       -  .+.+..-.+.+++|+++  +.+|.  ..+.+.  +...++.|.+
T Consensus        78 taG~~~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs--NP~d~~t~~~~k~sg~p~~~viG~g  145 (312)
T cd05293          78 TAGARQNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS--NPVDIMTYVAWKLSGLPKHRVIGSG  145 (312)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc--ChHHHHHHHHHHHhCCCHHHEEecC
Confidence            654311   233 111       1  13444556789999998  33333  223333  3345666653

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed

Probab=96.01  E-value=0.16  Score=54.08  Aligned_cols=165  Identities=19%  Similarity=0.224  Sum_probs=110.5

Q ss_pred             hCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHh
Q 019387          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~  186 (342)
                      +..|+|.|+--   ..+|=.+++-+++.+|-                     .|..+...+|.|.|.|.-|-.+|+.| .
T Consensus       151 ~~~ip~f~DD~---~GTa~v~lA~l~na~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~  205 (752)
T PRK07232        151 RMDIPVFHDDQ---HGTAIISAAALLNALEL---------------------VGKKIEDVKIVVSGAGAAAIACLNLL-V  205 (752)
T ss_pred             hcCCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECccHHHHHHHHHH-H
Confidence            34689988843   23455677777777762                     24568899999999999999999998 5


Q ss_pred             cCCc---EEEEEcCCch---hH---HHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHH
Q 019387          187 GFKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (342)
Q Consensus       187 afg~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~  257 (342)
                      ..|.   +++.+|.+.-   .+   ...+...|.    ..       ....+|+|+++.+|+++=+-     +.+.|+++
T Consensus       206 ~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k~~~a----~~-------~~~~~l~~~i~~~~v~iG~s-----~~g~~~~~  269 (752)
T PRK07232        206 ALGAKKENIIVCDSKGVIYKGRTEGMDEWKAAYA----VD-------TDARTLAEAIEGADVFLGLS-----AAGVLTPE  269 (752)
T ss_pred             HcCCCcccEEEEcCCCeecCCCcccccHHHHHHh----cc-------CCCCCHHHHHcCCCEEEEcC-----CCCCCCHH
Confidence            6788   7888887641   11   112222221    11       12358999999999887542     25899999


Q ss_pred             HHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCceEEEEecCCCCCCCcccccccc
Q 019387          258 RLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHIS  313 (342)
Q Consensus       258 ~l~~mk~ga~lINvaRG~~v-d~~aL~~aL~~g~i~~aaLDV~~~EP~~~~~tPhia  313 (342)
                      .++.|.+..++.=.+....- ..++.+++ ..|.|.+-+---+.+.=.|++..|-+.
T Consensus       270 ~v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGrs~~pnQ~NN~~~FPgi~  325 (752)
T PRK07232        270 MVKSMADNPIIFALANPDPEITPEEAKAV-RPDAIIATGRSDYPNQVNNVLCFPYIF  325 (752)
T ss_pred             HHHHhccCCEEEecCCCCccCCHHHHHHh-cCCEEEEECCcCCCCcccceeecchhh
Confidence            99999999999988877652 33333333 224566666333333337888888774

>PRK12862 malic enzyme; Reviewed

Probab=95.97  E-value=0.15  Score=54.40  Aligned_cols=164  Identities=16%  Similarity=0.178  Sum_probs=110.6

Q ss_pred             CCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhc
Q 019387          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (342)
Q Consensus       108 ~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~a  187 (342)
                      ..|+|.|+--   ..+|=.+++-+++.+|-                     .|..+...+|.|.|.|.-|-.+|+.| ..
T Consensus       160 ~~ip~f~DD~---~GTa~v~la~l~~a~~~---------------------~~~~~~~~~iv~~GaGaag~~~a~~l-~~  214 (763)
T PRK12862        160 MKIPVFHDDQ---HGTAIIVAAALLNGLKL---------------------VGKDIEDVKLVASGAGAAALACLDLL-VS  214 (763)
T ss_pred             CCCceEecCc---ccHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEEChhHHHHHHHHHH-HH
Confidence            3589999844   23455677777777762                     24578899999999999999999998 56


Q ss_pred             CCc---EEEEEcCCch---hH---HHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHH
Q 019387          188 FKM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (342)
Q Consensus       188 fg~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~  258 (342)
                      .|.   +++.+|+..-   .+   ...+...|.   .. .       ...+|+|+++.+|+++=+-     +.+.|+++.
T Consensus       215 ~G~~~~~i~~~D~~G~i~~~r~~~l~~~~~~~a---~~-~-------~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~  278 (763)
T PRK12862        215 LGVKRENIWVTDIKGVVYEGRTELMDPWKARYA---QK-T-------DARTLAEVIEGADVFLGLS-----AAGVLKPEM  278 (763)
T ss_pred             cCCCcccEEEEcCCCeeeCCCCccccHHHHHHh---hh-c-------ccCCHHHHHcCCCEEEEcC-----CCCCCCHHH
Confidence            788   7888996531   11   112222221   11 1       1258999999999987542     258999999


Q ss_pred             HhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCceEEEEecCCCCCCCcccccccc
Q 019387          259 LATMKKEAILVNCSRGPVI-DEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHIS  313 (342)
Q Consensus       259 l~~mk~ga~lINvaRG~~v-d~~aL~~aL~~g~i~~aaLDV~~~EP~~~~~tPhia  313 (342)
                      ++.|.+..++.=.+....- ..++.+++ ..|.|.+.+-.-|.+.=.|+++.|-|.
T Consensus       279 v~~M~~~piifalsNP~~E~~p~~a~~~-~~~~i~atGrs~~p~Q~NN~~~FPgi~  333 (763)
T PRK12862        279 VKKMAPRPLIFALANPTPEILPEEARAV-RPDAIIATGRSDYPNQVNNVLCFPYIF  333 (763)
T ss_pred             HHHhccCCEEEeCCCCcccCCHHHHHHh-cCCEEEEECCcCCCCcccceeeccchh
Confidence            9999999999988876642 33333333 224566666443444447888888774

>PRK14804 ornithine carbamoyltransferase; Provisional

Probab=95.97  E-value=0.58  Score=44.74  Aligned_cols=73  Identities=15%  Similarity=0.194  Sum_probs=49.3

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh-H-HHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT-R-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      .+.|++|++||- +++.++++..+ ..||++|.+..|..-. . .+...+    .....+    .+....++++.++++|
T Consensus       150 ~l~g~~va~vGd~~rv~~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~----~~~~~g----~i~~~~d~~~av~~aD  220 (311)
T PRK14804        150 PLNQKQLTYIGVHNNVVNSLIGIT-AALGIHLTLVTPIAAKENIHAQTVE----RAKKKG----TLSWEMNLHKAVSHAD  220 (311)
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCCccHHHHHHHHH----HHHhcC----CeEEEeCHHHHhCCCC
Confidence            478999999997 68999999886 5799999998875421 0 111000    011111    1223478999999999


Q ss_pred             EEEEc
Q 019387          239 VISLH  243 (342)
Q Consensus       239 iV~l~  243 (342)
                      +|..-
T Consensus       221 vvy~d  225 (311)
T PRK14804        221 YVYTD  225 (311)
T ss_pred             EEEee
Confidence            99873

>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase

Probab=95.94  E-value=0.026  Score=61.79  Aligned_cols=76  Identities=21%  Similarity=0.253  Sum_probs=48.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcE-------------EEEEcCCchhHHHHHHhhhhhhhhccCCCCcc--ccccC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-------------LIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRAS  228 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-------------V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  228 (342)
                      ..|+|+|||.|.||+..|+.|++.-+.+             |.+.|++++.. ++..+.+.      +.....  +....
T Consensus       568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a-~~la~~~~------~~~~v~lDv~D~e  640 (1042)
T PLN02819        568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDA-KETVEGIE------NAEAVQLDVSDSE  640 (1042)
T ss_pred             cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHH-HHHHHhcC------CCceEEeecCCHH
Confidence            4679999999999999999986544444             88899887542 22211110      111111  11223


Q ss_pred             CHHHHhhcCCEEEEcCCC
Q 019387          229 SMDEVLREADVISLHPVL  246 (342)
Q Consensus       229 ~l~~ll~~aDiV~l~~pl  246 (342)
                      ++.++++++|+|++|+|.
T Consensus       641 ~L~~~v~~~DaVIsalP~  658 (1042)
T PLN02819        641 SLLKYVSQVDVVISLLPA  658 (1042)
T ss_pred             HHHHhhcCCCEEEECCCc
Confidence            455555789999999995

>PRK12861 malic enzyme; Reviewed

Probab=95.92  E-value=0.13  Score=54.65  Aligned_cols=162  Identities=17%  Similarity=0.153  Sum_probs=107.3

Q ss_pred             CeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcC
Q 019387          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (342)
Q Consensus       109 gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~af  188 (342)
                      .|++.|+--   ..+|=.+++-+++.+|-                     .|..+...+|.|.|.|.-|-.+|+.| ...
T Consensus       157 ~ipvf~DD~---qGTa~v~lA~llnal~~---------------------~gk~l~d~~iv~~GAGaAg~~ia~~l-~~~  211 (764)
T PRK12861        157 KIPVFHDDQ---HGTAITVSAAFINGLKV---------------------VGKSIKEVKVVTSGAGAAALACLDLL-VDL  211 (764)
T ss_pred             CCCeecccc---chHHHHHHHHHHHHHHH---------------------hCCChhHcEEEEECHhHHHHHHHHHH-HHc
Confidence            689998843   23455677777877762                     24578899999999999999999998 567


Q ss_pred             Cc---EEEEEcCCch---hH---HHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHH
Q 019387          189 KM---NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (342)
Q Consensus       189 g~---~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l  259 (342)
                      |.   +++.+|++.-   .+   ...+...|.   + ..       ...+|.|+++.+|+++=+-     ..+.|+++.+
T Consensus       212 G~~~~~i~~~D~~Gli~~~r~~~l~~~k~~~a---~-~~-------~~~~L~eai~~advliG~S-----~~g~ft~e~v  275 (764)
T PRK12861        212 GLPVENIWVTDIEGVVYRGRTTLMDPDKERFA---Q-ET-------DARTLAEVIGGADVFLGLS-----AGGVLKAEML  275 (764)
T ss_pred             CCChhhEEEEcCCCeeeCCCcccCCHHHHHHH---h-hc-------CCCCHHHHHhcCCEEEEcC-----CCCCCCHHHH
Confidence            88   7888995541   11   111122221   1 11       1258999999999886542     2589999999


Q ss_pred             hcCCCCcEEEEcCCCccc-CHHHHHHHHHcCC-ceEEEEecCCCCCCCcccccccc
Q 019387          260 ATMKKEAILVNCSRGPVI-DEVALVEHLKQNP-MFRVGLDVFEVTELGFSSFKHIS  313 (342)
Q Consensus       260 ~~mk~ga~lINvaRG~~v-d~~aL~~aL~~g~-i~~aaLDV~~~EP~~~~~tPhia  313 (342)
                      +.|.+..++.=.|....- ..+..++  ..|+ |.+-+---+.+.=.|++..|-|.
T Consensus       276 ~~Ma~~PIIFaLsNPtpE~~pe~a~~--~~g~aivaTGrs~~pnQ~NN~l~FPgi~  329 (764)
T PRK12861        276 KAMAARPLILALANPTPEIFPELAHA--TRDDVVIATGRSDYPNQVNNVLCFPYIF  329 (764)
T ss_pred             HHhccCCEEEECCCCCccCCHHHHHh--cCCCEEEEeCCcCCCCccceeeecchhh
Confidence            999999999988876641 2232233  3344 54444333333337888887763

>PRK12749 quinate/shikimate dehydrogenase; Reviewed

Probab=95.91  E-value=0.087  Score=49.80  Aligned_cols=120  Identities=17%  Similarity=0.238  Sum_probs=68.0

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--hHHHHHHhhhhhhhhccCCCCcccccc---CCHHHHhh
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLR  235 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~ll~  235 (342)
                      .+.||++.|+|.|..+++++-.|+ ..|+ +|.+++|..+  .+.+.+.+.+.    ........+...   ..+.+.+.
T Consensus       121 ~~~~k~vlvlGaGGaarAi~~~l~-~~g~~~i~i~nRt~~~~~ka~~la~~~~----~~~~~~~~~~~~~~~~~l~~~~~  195 (288)
T PRK12749        121 DIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRVN----ENTDCVVTVTDLADQQAFAEALA  195 (288)
T ss_pred             CcCCCEEEEECCcHHHHHHHHHHH-HCCCCEEEEEeCCccHHHHHHHHHHHhh----hccCceEEEechhhhhhhhhhcc
Confidence            467899999999999999998764 5676 7999999853  23333322221    000000111111   12344567


Q ss_pred             cCCEEEEcCCCCcc--ccc-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          236 EADVISLHPVLDKT--TYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       236 ~aDiV~l~~pl~~~--t~~-li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      ++|+|+.+.|..-.  ... ++..  .+.++++.++.++.-.+. .+.=|.+|-+.|
T Consensus       196 ~aDivINaTp~Gm~~~~~~~~~~~--~~~l~~~~~v~D~vY~P~-~T~ll~~A~~~G  249 (288)
T PRK12749        196 SADILTNGTKVGMKPLENESLVND--ISLLHPGLLVTECVYNPH-MTKLLQQAQQAG  249 (288)
T ss_pred             cCCEEEECCCCCCCCCCCCCCCCc--HHHCCCCCEEEEecCCCc-cCHHHHHHHHCC
Confidence            89999999986421  111 1111  234667888888876553 333333333333

>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated

Probab=95.91  E-value=0.018  Score=55.67  Aligned_cols=96  Identities=21%  Similarity=0.235  Sum_probs=60.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--------------------hHHHHHHhhhhhhhhccCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--------------------TRLEKFVTAYGQFLKANGE  219 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~--------------------~~~~~~~~~~~~~~~~~~~  219 (342)
                      ..|..++|.|||.|.+|..+|+.|+ ..|. ++..+|...-                    .+.+...+...+.   ...
T Consensus        20 ~~L~~~~VlVvG~GglGs~va~~La-~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~i---np~   95 (339)
T PRK07688         20 QKLREKHVLIIGAGALGTANAEMLV-RAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEI---NSD   95 (339)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHH---CCC
Confidence            5689999999999999999999985 6688 8888887520                    0111100000000   000


Q ss_pred             CCccc-c---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          220 QPVTW-K---RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       220 ~~~~~-~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      ..... .   ...++.++++++|+|+.|.. +.+++.++++...+.
T Consensus        96 v~v~~~~~~~~~~~~~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~  140 (339)
T PRK07688         96 VRVEAIVQDVTAEELEELVTGVDLIIDATD-NFETRFIVNDAAQKY  140 (339)
T ss_pred             cEEEEEeccCCHHHHHHHHcCCCEEEEcCC-CHHHHHHHHHHHHHh
Confidence            00000 0   12346688999999999975 677888887765543

>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme

Probab=95.90  E-value=0.13  Score=47.63  Aligned_cols=159  Identities=14%  Similarity=0.125  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCc-----------E
Q 019387          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-----------N  191 (342)
Q Consensus       123 vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~-----------~  191 (342)
                      +|=.+++-+++.+|-                     .|..|...++.|+|.|.-|-.+|+.|. ..++           +
T Consensus         4 TaaV~lAgllnAlk~---------------------~g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~Gls~e~A~~~   61 (254)
T cd00762           4 TASVAVAGLLAALKV---------------------TKKKISEHKVLFNGAGAAALGIANLIV-XLXVKEGISKEEACKR   61 (254)
T ss_pred             hHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECcCHHHHHHHHHHH-HHHHhcCCCHHHHhcc
Confidence            455567777777762                     235688999999999999999999874 4444           6


Q ss_pred             EEEEcCCch---hH--HHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEEcCCCCcccccccCHHHHhcCC-
Q 019387          192 LIYYDLYQA---TR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLATMK-  263 (342)
Q Consensus       192 V~~~d~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l~~pl~~~t~~li~~~~l~~mk-  263 (342)
                      ++.+|++.-   .+  ...+...+..+...       .....+|.|+++  +.|+++=.-    ...++|.++.++.|. 
T Consensus        62 i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~-------~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~  130 (254)
T cd00762          62 IWXVDRKGLLVKNRKETCPNEYHLARFANP-------ERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAE  130 (254)
T ss_pred             EEEECCCCeEeCCCCccCHHHHHHHHHcCc-------ccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhh
Confidence            888887631   11  11111111011111       112369999999  999997542    225899999999998 


Q ss_pred             --CCcEEEEcCCCcc---cCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccccc
Q 019387          264 --KEAILVNCSRGPV---IDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHIST  314 (342)
Q Consensus       264 --~ga~lINvaRG~~---vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~  314 (342)
                        +..++.=.|.-..   +..++.+++=+-..|.+.+.-.+.++-          .|+++.|-+.-
T Consensus       131 ~~~~PIIFaLSNPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGigl  196 (254)
T cd00762         131 INERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVAL  196 (254)
T ss_pred             cCCCCEEEECCCcCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhh
Confidence              8889888877665   344445554322245555554333321          67777777643

Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut

>PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=95.87  E-value=0.063  Score=51.38  Aligned_cols=132  Identities=9%  Similarity=-0.020  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchh------HHHHHHh----hhhhhhhccCCCC--------ccccccC--CHHHHhh
Q 019387          176 IGSAYARMMVEGFKMNLIYYDLYQAT------RLEKFVT----AYGQFLKANGEQP--------VTWKRAS--SMDEVLR  235 (342)
Q Consensus       176 IG~~vA~~l~~afg~~V~~~d~~~~~------~~~~~~~----~~~~~~~~~~~~~--------~~~~~~~--~l~~ll~  235 (342)
                      ||..+|..++ ..|.+|..||++++.      ..+....    .+..... .+...        .......  +..+.++
T Consensus         1 MG~giA~~~a-~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~g~~~~~~~~~~~~~i~~~~~~~~~~a~~   78 (314)
T PRK08269          1 MGQGIALAFA-FAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVA-LGRIDAAQADAVLARIAVVARDGAADALA   78 (314)
T ss_pred             CcHHHHHHHH-hCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHH-cCCCChhhHHHHHhCeEeecCcchHHHhc
Confidence            6888998875 569999999998842      1111111    1111111 11100        0111122  2567889


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCccccccc
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKHI  312 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPhi  312 (342)
                      +||+|+-++|-+.+.+.-+-.+..+.++++++|...+  +.+....|.+.+.. .=+..++-.|.+-+  |-+-+.|+-
T Consensus        79 ~aD~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSnt--S~~~~~~la~~~~~-p~r~~g~Hf~~Pp~~~~lvEVv~g~  154 (314)
T PRK08269         79 DADLVFEAVPEVLDAKREALRWLGRHVDADAIIASTT--STFLVTDLQRHVAH-PERFLNAHWLNPAYLMPLVEVSPSD  154 (314)
T ss_pred             cCCEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEcc--ccCCHHHHHhhcCC-cccEEEEecCCccccCceEEEeCCC
Confidence            9999999999999988888888888899999995544  34666777777642 23345554443322  444455554

>PRK06270 homoserine dehydrogenase; Provisional

Probab=95.82  E-value=0.062  Score=52.01  Aligned_cols=121  Identities=21%  Similarity=0.278  Sum_probs=66.1

Q ss_pred             eEEEEecCHHHHHHHHHHHh---------cCCcEEEE-EcCCch-----h-HHHHHHhhhhhhhhccCCCCc--cccccC
Q 019387          167 TVGVIGAGRIGSAYARMMVE---------GFKMNLIY-YDLYQA-----T-RLEKFVTAYGQFLKANGEQPV--TWKRAS  228 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~---------afg~~V~~-~d~~~~-----~-~~~~~~~~~~~~~~~~~~~~~--~~~~~~  228 (342)
                      +|||+|+|+||+.+++.|.+         +++.+|.+ .|+...     . ..+...    .+....+....  ......
T Consensus         4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~----~~~~~~~~~~~~~~~~~~~   79 (341)
T PRK06270          4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELAL----KVKEETGKLADYPEGGGEI   79 (341)
T ss_pred             EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHH----HHHhccCCcccCccccccC
Confidence            79999999999999998732         23677664 564311     0 011100    00111110000  001124


Q ss_pred             CHHHHhh--cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCc
Q 019387          229 SMDEVLR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPM  291 (342)
Q Consensus       229 ~l~~ll~--~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~aL~~g~i  291 (342)
                      ++++++.  ..|+|+.|+|.+.++...--.-....++.|.-+|-..-+.+ ..-++|.++.++...
T Consensus        80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~g~  145 (341)
T PRK06270         80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKNGV  145 (341)
T ss_pred             CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHcCC
Confidence            7888884  68999999996554333222333566677777766544443 234567776665444

>cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases

Probab=95.80  E-value=0.037  Score=55.18  Aligned_cols=78  Identities=14%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             eEEEEecCHHHHHHHH--HHHh--cC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          167 TVGVIGAGRIGSAYAR--MMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~--~l~~--af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +|+|||.|.+|...+-  -++.  ++ |.+|..||+.++.. +........... ....+..+....++++.++.||+|+
T Consensus         2 KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l-~~~~~~~~~~~~-~~~~~~~I~~ttD~~eal~~AD~Vi   79 (423)
T cd05297           2 KIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERL-ETVEILAKKIVE-ELGAPLKIEATTDRREALDGADFVI   79 (423)
T ss_pred             eEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHH-HHHHHHHHHHHH-hcCCCeEEEEeCCHHHHhcCCCEEE
Confidence            7999999999998654  1221  33 56999999987532 221111111111 1112233444578899999999999


Q ss_pred             EcCCC
Q 019387          242 LHPVL  246 (342)
Q Consensus       242 l~~pl  246 (342)
                      .++|.
T Consensus        80 ~ai~~   84 (423)
T cd05297          80 NTIQV   84 (423)
T ss_pred             EeeEe
Confidence            99983

linked to 3D####ucture

>PRK08762 molybdopterin biosynthesis protein MoeB; Validated

Probab=95.80  E-value=0.072  Score=52.24  Aligned_cols=95  Identities=19%  Similarity=0.208  Sum_probs=58.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc------------------hhHHHHHHhhhhhhhhccCCCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ------------------ATRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|+|.|.+|..+|+.|+ ..|+ ++..+|...                  ..+.+...+...+..   ....
T Consensus       131 ~~l~~~~VlvvG~GG~Gs~ia~~La-~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~v~  206 (376)
T PRK08762        131 RRLLEARVLLIGAGGLGSPAALYLA-AAGVGTLGIVDHDVVDRSNLQRQILHTEDRVGQPKVDSAAQRLAALN---PDVQ  206 (376)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEecchhhccccccchhhCCCcHHHHHHHHHHHHC---CCCE
Confidence            4688999999999999999999984 6787 688888752                  111111111111100   1000


Q ss_pred             c-ccc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387          222 V-TWK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       222 ~-~~~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~  260 (342)
                      . ...   ...+++++++++|+|+.|+. +.+++.++++...+
T Consensus       207 v~~~~~~~~~~~~~~~~~~~D~Vv~~~d-~~~~r~~ln~~~~~  248 (376)
T PRK08762        207 VEAVQERVTSDNVEALLQDVDVVVDGAD-NFPTRYLLNDACVK  248 (376)
T ss_pred             EEEEeccCChHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHH
Confidence            0 010   11245678899999998875 56677777776544

>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.76  E-value=0.035  Score=56.36  Aligned_cols=113  Identities=19%  Similarity=0.198  Sum_probs=69.8

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +.|++|.|+|+|.+|.+.++.| +..|++|.++|..+.. .+.. .       ..+.   .........+.+.++|+|+.
T Consensus        10 ~~~~~v~V~G~G~sG~aa~~~L-~~~G~~v~~~D~~~~~-~~~l-~-------~~g~---~~~~~~~~~~~l~~~D~VV~   76 (488)
T PRK03369         10 LPGAPVLVAGAGVTGRAVLAAL-TRFGARPTVCDDDPDA-LRPH-A-------ERGV---ATVSTSDAVQQIADYALVVT   76 (488)
T ss_pred             cCCCeEEEEcCCHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHH-H-------hCCC---EEEcCcchHhHhhcCCEEEE
Confidence            4689999999999999999986 7999999999976432 2211 1       1111   11111123445678999988


Q ss_pred             cCCCCcccc----------cccCHHHHh-cC--------CCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          243 HPVLDKTTY----------HLINKERLA-TM--------KKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       243 ~~pl~~~t~----------~li~~~~l~-~m--------k~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ...-.+.+.          .++++-.|. ..        +...+-|-=+-|..-...-+.+.|+.
T Consensus        77 SpGi~~~~p~~~~a~~~gi~v~~~iel~~~~~~~~~~~~~~~vIgITGTnGKTTTt~li~~iL~~  141 (488)
T PRK03369         77 SPGFRPTAPVLAAAAAAGVPIWGDVELAWRLDAAGCYGPPRRWLVVTGTNGKTTTTSMLHAMLIA  141 (488)
T ss_pred             CCCCCCCCHHHHHHHHCCCcEeeHHHHhhhhhhhhccCCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            754433221          233433332 11        11345566678888888877777765

>COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion]

Probab=95.74  E-value=0.028  Score=52.98  Aligned_cols=112  Identities=21%  Similarity=0.204  Sum_probs=73.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc-cCCCCccccccC----------C
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRAS----------S  229 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~----------~  229 (342)
                      -...+.++-++|+|-+|-..+.. ++-.|+-|..+|.++....+.....- .+... +.+..-++....          -
T Consensus       160 gtv~pA~vlv~G~Gvagl~aiat-a~~lG~iVt~rdlrm~~Keqv~s~Ga-~f~~~~~ee~~gGYAk~ms~~~~~~q~~~  237 (356)
T COG3288         160 GTVSPAKVLVIGAGVAGLAAIAT-AVRLGAIVTARDLRMFKKEQVESLGA-KFLAVEDEESAGGYAKEMSEEFIAKQAEL  237 (356)
T ss_pred             ccccchhhhhhhHHHHHHHHHHH-HhhcceEEehhhhhhHHhhhhhhccc-ccccccccccCCCccccCCHHHHHHHHHH
Confidence            45677889999999999998877 57789999999987754322110000 01111 111111222222          2


Q ss_pred             HHHHhhcCCEEEEc--CCCCcccccccCHHHHhcCCCCcEEEEcC--CCc
Q 019387          230 MDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGP  275 (342)
Q Consensus       230 l~~ll~~aDiV~l~--~pl~~~t~~li~~~~l~~mk~ga~lINva--RG~  275 (342)
                      +.+..++.|+|+..  +|.- ....|+.++....||||+++||.+  +|+
T Consensus       238 ~a~~~~~~DivITTAlIPGr-pAP~Lvt~~mv~sMkpGSViVDlAa~~GG  286 (356)
T COG3288         238 VAEQAKEVDIVITTALIPGR-PAPKLVTAEMVASMKPGSVIVDLAAETGG  286 (356)
T ss_pred             HHHHhcCCCEEEEecccCCC-CCchhhHHHHHHhcCCCcEEEEehhhcCC
Confidence            44667889999665  5543 456899999999999999999974  553

>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase

Probab=95.69  E-value=0.059  Score=53.40  Aligned_cols=89  Identities=19%  Similarity=0.252  Sum_probs=61.4

Q ss_pred             ccCCCeEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHH
Q 019387          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (342)
Q Consensus       162 ~L~gktvgIvG~----------G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (342)
                      .+.|++|+|+|+          ..-...+++.| ...|++|.+|||........   .              .....+++
T Consensus       310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L-~~~g~~v~~~DP~~~~~~~~---~--------------~~~~~~~~  371 (411)
T TIGR03026       310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELL-KEKGAKVKAYDPLVPEEEVK---G--------------LPLIDDLE  371 (411)
T ss_pred             cccCCEEEEEeeEecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChhhhh---h--------------cccCCCHH
Confidence            478999999998          45778899997 68899999999986432110   0              01136888


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHHHHh-cCCCCcEEEEc
Q 019387          232 EVLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNC  271 (342)
Q Consensus       232 ~ll~~aDiV~l~~pl~~~t~~li~~~~l~-~mk~ga~lINv  271 (342)
                      +.+++||.|+++.+- ++-+. ++-+.+. .|+ ..+++|.
T Consensus       372 ~~~~~ad~~v~~t~~-~~~~~-~~~~~~~~~~~-~~~v~D~  409 (411)
T TIGR03026       372 EALKGADALVILTDH-DEFKD-LDLEKIKDLMK-GKVVVDT  409 (411)
T ss_pred             HHHhCCCEEEEecCC-HHHhc-cCHHHHHHhcC-CCEEEeC
Confidence            999999999999863 23222 3444444 455 4577774

All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.

>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]

Probab=95.65  E-value=0.045  Score=53.70  Aligned_cols=115  Identities=18%  Similarity=0.243  Sum_probs=71.9

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh----------HHHHHHhhhhhhhhccCCCCccccccCCH
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT----------RLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      ..|.|+||.|-|+|++|+.+|+.| ...|++|++.|.+...          .+....+...+..   ..  .+...... 
T Consensus       203 ~~l~G~rVaVQG~GNVg~~aa~~l-~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~---~~--~ga~~i~~-  275 (411)
T COG0334         203 DDLEGARVAVQGFGNVGQYAAEKL-HELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVA---EY--AGAEYITN-  275 (411)
T ss_pred             CCcCCCEEEEECccHHHHHHHHHH-HHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHH---hh--cCceEccc-
Confidence            358999999999999999999997 5779999998766540          0000000000000   00  01111122 


Q ss_pred             HHHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       231 ~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      ++++ ..||+++=|     .+.+.|+.+...+++.. +++-.+-|++-. +|--..++.|
T Consensus       276 ~e~~~~~cDIl~Pc-----A~~n~I~~~na~~l~ak-~V~EgAN~P~t~-eA~~i~~erG  328 (411)
T COG0334         276 EELLEVDCDILIPC-----ALENVITEDNADQLKAK-IVVEGANGPTTP-EADEILLERG  328 (411)
T ss_pred             cccccccCcEEccc-----ccccccchhhHHHhhhc-EEEeccCCCCCH-HHHHHHHHCC
Confidence            4444 368988755     45789999999999876 888888888653 3333333444

>PRK14027 quinate/shikimate dehydrogenase; Provisional

Probab=95.65  E-value=0.12  Score=48.72  Aligned_cols=120  Identities=19%  Similarity=0.197  Sum_probs=68.9

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.||++.|+|.|..|++++-.|+ ..|+ ++.+++|..++. +...+.+.   ...+..........++++.+..+|+|
T Consensus       124 ~~~~k~vlilGaGGaarAi~~aL~-~~g~~~i~i~nR~~~ka-~~La~~~~---~~~~~~~~~~~~~~~~~~~~~~~div  198 (283)
T PRK14027        124 NAKLDSVVQVGAGGVGNAVAYALV-THGVQKLQVADLDTSRA-QALADVIN---NAVGREAVVGVDARGIEDVIAAADGV  198 (283)
T ss_pred             CcCCCeEEEECCcHHHHHHHHHHH-HCCCCEEEEEcCCHHHH-HHHHHHHh---hccCcceEEecCHhHHHHHHhhcCEE
Confidence            355899999999999999999874 6787 788999986532 22222111   00010000000111234566789999


Q ss_pred             EEcCCCCcccc--cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          241 SLHPVLDKTTY--HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       241 ~l~~pl~~~t~--~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      +.+.|..-...  -.++.   +.++++.+++++--.+ ..+.=|.+|-+.|.
T Consensus       199 INaTp~Gm~~~~~~~~~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G~  246 (283)
T PRK14027        199 VNATPMGMPAHPGTAFDV---SCLTKDHWVGDVVYMP-IETELLKAARALGC  246 (283)
T ss_pred             EEcCCCCCCCCCCCCCCH---HHcCCCcEEEEcccCC-CCCHHHHHHHHCCC
Confidence            99999643211  11322   3456677777776655 33444444444443

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=95.65  E-value=0.075  Score=51.00  Aligned_cols=96  Identities=17%  Similarity=0.185  Sum_probs=61.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh---cCCE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADV  239 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~---~aDi  239 (342)
                      .|++|.|.|.|.+|...++. ++..|+ +|++.+++++.. +.. ..+       +....-.....+++++..   ..|+
T Consensus       169 ~g~~VlV~G~G~vG~~aiql-ak~~G~~~Vi~~~~~~~~~-~~a-~~l-------Ga~~vi~~~~~~~~~~~~~~g~~D~  238 (343)
T PRK09880        169 QGKRVFVSGVGPIGCLIVAA-VKTLGAAEIVCADVSPRSL-SLA-REM-------GADKLVNPQNDDLDHYKAEKGYFDV  238 (343)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCcEEEEEeCCHHHH-HHH-HHc-------CCcEEecCCcccHHHHhccCCCCCE
Confidence            58999999999999999998 589999 588888776543 211 111       111100001123444332   2799


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      ++-|... +.    .-...++.+++|..+|.++..
T Consensus       239 vid~~G~-~~----~~~~~~~~l~~~G~iv~~G~~  268 (343)
T PRK09880        239 SFEVSGH-PS----SINTCLEVTRAKGVMVQVGMG  268 (343)
T ss_pred             EEECCCC-HH----HHHHHHHHhhcCCEEEEEccC
Confidence            9988753 11    124567889999999998753

>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.64  E-value=0.027  Score=55.89  Aligned_cols=109  Identities=19%  Similarity=0.192  Sum_probs=62.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .++|.|+|+|.+|.++|+.| +..|.+|.++|+++......  ..    .      ...  .....+.+..++|+|+.+.
T Consensus         3 ~~~i~iiGlG~~G~slA~~l-~~~G~~V~g~D~~~~~~~~~--~~----~------~~~--~~~~~~~~~~~~dlvV~s~   67 (418)
T PRK00683          3 LQRVVVLGLGVTGKSIARFL-AQKGVYVIGVDKSLEALQSC--PY----I------HER--YLENAEEFPEQVDLVVRSP   67 (418)
T ss_pred             CCeEEEEEECHHHHHHHHHH-HHCCCEEEEEeCCccccchh--HH----H------hhh--hcCCcHHHhcCCCEEEECC
Confidence            46899999999999999997 78999999999876431100  00    0      000  0112334457799998887


Q ss_pred             CCCcccc----------cccCHHHH--hc--C-CCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          245 VLDKTTY----------HLINKERL--AT--M-KKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       245 pl~~~t~----------~li~~~~l--~~--m-k~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      +..+...          .+++...+  ..  + +...+=|-=+-|..-..+=|.+.|+.
T Consensus        68 gi~~~~~~l~~A~~~g~~vv~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~ml~~iL~~  126 (418)
T PRK00683         68 GIKKEHPWVQAAIASHIPVVTDIQLAFQTPEFTRYPSLGITGSTGKTTTILFLEHLLKR  126 (418)
T ss_pred             CCCCCcHHHHHHHHCCCcEEEHHHHHHhhhhcCCCCEEEEECCCChHHHHHHHHHHHHH
Confidence            6543211          12222111  11  1 11234455566766666666666654

>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins

Probab=95.61  E-value=0.035  Score=52.65  Aligned_cols=123  Identities=12%  Similarity=0.238  Sum_probs=63.7

Q ss_pred             EEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          168 VGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       168 vgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      |+|||.|.||..+|..++. +++ +|+.+|..++.. ............... .........+.++ +++||+|+++...
T Consensus         1 I~IIGaG~vG~~ia~~la~~~l~-eV~L~Di~e~~~-~g~~~dl~~~~~~~~-~~~~I~~t~d~~~-l~dADiVIit~g~   76 (300)
T cd01339           1 ISIIGAGNVGATLAQLLALKELG-DVVLLDIVEGLP-QGKALDISQAAPILG-SDTKVTGTNDYED-IAGSDVVVITAGI   76 (300)
T ss_pred             CEEECCCHHHHHHHHHHHhCCCc-EEEEEeCCCcHH-HHHHHHHHHhhhhcC-CCeEEEEcCCHHH-hCCCCEEEEecCC
Confidence            6899999999999988742 334 999999986532 111110000000001 1112222345554 7999999988742


Q ss_pred             Cccccc------------ccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH--HcCCceEEE
Q 019387          247 DKTTYH------------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL--KQNPMFRVG  295 (342)
Q Consensus       247 ~~~t~~------------li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL--~~g~i~~aa  295 (342)
                       +...+            ++-  ...+....+.+++|+++--.-+-...+.+..  ...++.|.+
T Consensus        77 -p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~di~t~~~~~~s~~~~~rviGlg  140 (300)
T cd01339          77 -PRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPLDVMTYVAYKASGFPRNRVIGMA  140 (300)
T ss_pred             -CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHhCCCHHHEEEec
Confidence             22111            111  1233444567788888733222233333332  122566666

Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas

>PRK05562 precorrin-2 dehydrogenase; Provisional

Probab=95.60  E-value=0.039  Score=50.14  Aligned_cols=96  Identities=10%  Similarity=0.062  Sum_probs=59.1

Q ss_pred             cccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCCHHHHhhcC
Q 019387          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREA  237 (342)
Q Consensus       159 ~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~~a  237 (342)
                      ....+.|++|.|||-|.+|..=++.| ..+|++|+++.+...+....+..        .+.  ..+. .... ++-+..+
T Consensus        19 i~l~~~~~~VLVVGGG~VA~RK~~~L-l~~gA~VtVVap~i~~el~~l~~--------~~~--i~~~~r~~~-~~dl~g~   86 (223)
T PRK05562         19 ISLLSNKIKVLIIGGGKAAFIKGKTF-LKKGCYVYILSKKFSKEFLDLKK--------YGN--LKLIKGNYD-KEFIKDK   86 (223)
T ss_pred             eEEECCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCC-hHHhCCC
Confidence            34567899999999999999878777 47999999999887655443221        011  1111 1112 2345788


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINv  271 (342)
                      ++|+.++...     -+|+......+.-.+++|+
T Consensus        87 ~LViaATdD~-----~vN~~I~~~a~~~~~lvn~  115 (223)
T PRK05562         87 HLIVIATDDE-----KLNNKIRKHCDRLYKLYID  115 (223)
T ss_pred             cEEEECCCCH-----HHHHHHHHHHHHcCCeEEE
Confidence            9888887632     2334444444433345553

>PRK10637 cysG siroheme synthase; Provisional

Probab=95.58  E-value=0.04  Score=55.47  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=61.3

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..|.|++|.|||-|.+|..=++.| ..+|++|.++.+.....+..+..        .+.  ..+....--++.+..+++|
T Consensus         8 ~~l~~~~vlvvGgG~vA~rk~~~l-l~~ga~v~visp~~~~~~~~l~~--------~~~--i~~~~~~~~~~dl~~~~lv   76 (457)
T PRK10637          8 CQLRDRDCLLVGGGDVAERKARLL-LDAGARLTVNALAFIPQFTAWAD--------AGM--LTLVEGPFDESLLDTCWLA   76 (457)
T ss_pred             EEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCCCHHHHHHHh--------CCC--EEEEeCCCChHHhCCCEEE
Confidence            578999999999999999877777 47899999998876554433211        111  1111111123456889988


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      +.++...+     +|+.....++...+++|++
T Consensus        77 ~~at~d~~-----~n~~i~~~a~~~~~lvN~~  103 (457)
T PRK10637         77 IAATDDDA-----VNQRVSEAAEARRIFCNVV  103 (457)
T ss_pred             EECCCCHH-----HhHHHHHHHHHcCcEEEEC
Confidence            88876432     4455455555555666653

>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]

Probab=95.58  E-value=1.2  Score=42.14  Aligned_cols=105  Identities=17%  Similarity=0.205  Sum_probs=68.6

Q ss_pred             cCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +.|+++..+|=| +++.++.... ..|||+|...-|..-...+.+.+.........   ...+....+.++.++++|+|.
T Consensus       151 l~g~k~a~vGDgNNv~nSl~~~~-a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~---g~~i~~t~d~~eAv~gADvvy  226 (310)
T COG0078         151 LKGLKLAYVGDGNNVANSLLLAA-AKLGMDVRIATPKGYEPDPEVVEKAKENAKES---GGKITLTEDPEEAVKGADVVY  226 (310)
T ss_pred             ccCcEEEEEcCcchHHHHHHHHH-HHhCCeEEEECCCcCCcCHHHHHHHHHHHHhc---CCeEEEecCHHHHhCCCCEEE
Confidence            899999999977 6888887763 57999999877765333233222211111111   112334568999999999997


Q ss_pred             EcCC--CCcccc-----------cccCHHHHhcCCCCcEEEEc
Q 019387          242 LHPV--LDKTTY-----------HLINKERLATMKKEAILVNC  271 (342)
Q Consensus       242 l~~p--l~~~t~-----------~li~~~~l~~mk~ga~lINv  271 (342)
                      .=+.  ..++..           .-+|.+.++.-+++++|.-|
T Consensus       227 TDvWvSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHC  269 (310)
T COG0078         227 TDVWVSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHC  269 (310)
T ss_pred             ecCcccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeC
Confidence            6543  223332           55678888888888888876

>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1

Probab=95.57  E-value=0.042  Score=48.93  Aligned_cols=37  Identities=22%  Similarity=0.260  Sum_probs=32.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~  198 (342)
                      ..|.+++|.|+|+|.+|.++++.|+ ..|+ ++..+|..
T Consensus        17 ~~L~~s~VlIiG~gglG~evak~La-~~GVg~i~lvD~d   54 (197)
T cd01492          17 KRLRSARILLIGLKGLGAEIAKNLV-LSGIGSLTILDDR   54 (197)
T ss_pred             HHHHhCcEEEEcCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence            5689999999999999999999985 6788 57788865

Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.

>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional

Probab=95.57  E-value=0.032  Score=51.47  Aligned_cols=105  Identities=19%  Similarity=0.229  Sum_probs=62.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHH------------HHhhhhhhhhccCCCCccc-
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGEQPVTW-  224 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~-  224 (342)
                      ..|.+++|+|+|.|.+|..+|+.|+ ..|. ++..+|...-..  +..            ..+.....+..-. +...+ 
T Consensus        28 ~~L~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~Ka~~a~~~l~~ln-p~v~i~  105 (245)
T PRK05690         28 EKLKAARVLVVGLGGLGCAASQYLA-AAGVGTLTLVDFDTVSLSNLQRQVLHDDATIGQPKVESARAALARIN-PHIAIE  105 (245)
T ss_pred             HHhcCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCEECcchhhhhhcCChhhCCChHHHHHHHHHHHHC-CCCEEE
Confidence            5789999999999999999999985 5676 677777543210  000            0000000011000 00101 


Q ss_pred             --c---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387          225 --K---RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       225 --~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINv  271 (342)
                        .   ...+++++++++|+|+.|+. +.+++..+++...+.-+   -+|..
T Consensus       106 ~~~~~i~~~~~~~~~~~~DiVi~~~D-~~~~r~~ln~~~~~~~i---p~v~~  153 (245)
T PRK05690        106 TINARLDDDELAALIAGHDLVLDCTD-NVATRNQLNRACFAAKK---PLVSG  153 (245)
T ss_pred             EEeccCCHHHHHHHHhcCCEEEecCC-CHHHHHHHHHHHHHhCC---EEEEe
Confidence              0   11235678899999999985 67788888877655433   35553

>PRK00066 ldh L-lactate dehydrogenase; Reviewed

Probab=95.55  E-value=0.045  Score=52.37  Aligned_cols=103  Identities=16%  Similarity=0.233  Sum_probs=58.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .+++|+|||.|++|..+|..| ...|.  ++..+|.+.+.......+-. ... ... ...... ..+.+ .+++||+|+
T Consensus         5 ~~~ki~iiGaG~vG~~~a~~l-~~~~~~~el~L~D~~~~~~~g~~~Dl~-~~~-~~~-~~~~i~-~~~~~-~~~~adivI   78 (315)
T PRK00066          5 QHNKVVLVGDGAVGSSYAYAL-VNQGIADELVIIDINKEKAEGDAMDLS-HAV-PFT-SPTKIY-AGDYS-DCKDADLVV   78 (315)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhcCCCCEEEEEeCCCchhHHHHHHHH-hhc-ccc-CCeEEE-eCCHH-HhCCCCEEE
Confidence            467999999999999999986 45566  89999987643211111110 000 000 011111 23444 479999998


Q ss_pred             EcCCC--Cc-ccc--------cccC--HHHHhcCCCCcEEEEcC
Q 019387          242 LHPVL--DK-TTY--------HLIN--KERLATMKKEAILVNCS  272 (342)
Q Consensus       242 l~~pl--~~-~t~--------~li~--~~~l~~mk~ga~lINva  272 (342)
                      ++.-.  .| +++        .++.  ...+..-.+.+.+|+++
T Consensus        79 itag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvs  122 (315)
T PRK00066         79 ITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVAS  122 (315)
T ss_pred             EecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            87543  11 122        1121  12333334688999997

>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1

Probab=95.54  E-value=0.019  Score=53.36  Aligned_cols=92  Identities=17%  Similarity=0.119  Sum_probs=50.2

Q ss_pred             HHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHH
Q 019387          181 ARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (342)
Q Consensus       181 A~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l  259 (342)
                      |+.|. +++..+|++||+++.....+..         .+....   ...+ .+.++++|+|++|+|. ..+..++ ++.-
T Consensus         2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~---------~g~~~~---~~~~-~~~~~~~DlvvlavP~-~~~~~~l-~~~~   66 (258)
T PF02153_consen    2 ALALRKAGPDVEVYGYDRDPETLEAALE---------LGIIDE---ASTD-IEAVEDADLVVLAVPV-SAIEDVL-EEIA   66 (258)
T ss_dssp             HHHHHHTTTTSEEEEE-SSHHHHHHHHH---------TTSSSE---EESH-HHHGGCCSEEEE-S-H-HHHHHHH-HHHH
T ss_pred             hHHHHhCCCCeEEEEEeCCHHHHHHHHH---------CCCeee---ccCC-HhHhcCCCEEEEcCCH-HHHHHHH-HHhh
Confidence            45542 2445899999999875433211         122111   1223 5678999999999995 2334444 3445


Q ss_pred             hcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          260 ATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       260 ~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      ..+++|+++++++--..--.+++.+.+.
T Consensus        67 ~~~~~~~iv~Dv~SvK~~~~~~~~~~~~   94 (258)
T PF02153_consen   67 PYLKPGAIVTDVGSVKAPIVEAMERLLP   94 (258)
T ss_dssp             CGS-TTSEEEE--S-CHHHHHHHHHHHT
T ss_pred             hhcCCCcEEEEeCCCCHHHHHHHHHhcC
Confidence            5689999999998765433444444444

3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.

>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []

Probab=95.52  E-value=0.043  Score=46.16  Aligned_cols=75  Identities=23%  Similarity=0.365  Sum_probs=45.9

Q ss_pred             eEEEEec-CHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          167 TVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      +|+|||. |++|+.+|-.|. +.++-++..+|...... +............ .  ...........+.+++||+|+++.
T Consensus         2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~-~g~a~Dl~~~~~~-~--~~~~~i~~~~~~~~~~aDivvita   77 (141)
T PF00056_consen    2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKA-EGEALDLSHASAP-L--PSPVRITSGDYEALKDADIVVITA   77 (141)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHH-HHHHHHHHHHHHG-S--TEEEEEEESSGGGGTTESEEEETT
T ss_pred             EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccc-eeeehhhhhhhhh-c--ccccccccccccccccccEEEEec
Confidence            7999999 999999998764 35667999999986432 2211111000000 0  011111225566778999999987


Q ss_pred             C
Q 019387          245 V  245 (342)
Q Consensus       245 p  245 (342)
                      -
T Consensus        78 g   78 (141)
T PF00056_consen   78 G   78 (141)
T ss_dssp             S
T ss_pred             c
Confidence            3

L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....

>KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism]

Probab=95.52  E-value=0.012  Score=53.22  Aligned_cols=134  Identities=21%  Similarity=0.278  Sum_probs=82.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh----hhcc-CCCCcc-----------cccc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF----LKAN-GEQPVT-----------WKRA  227 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~----~~~~-~~~~~~-----------~~~~  227 (342)
                      .-+.|+|+|-|-||..+|+.. ..-|.+|+.+|.+.+...++ .++..+.    ...+ ...+..           ....
T Consensus        10 ~~~~V~ivGaG~MGSGIAQv~-a~sg~~V~l~d~~~~aL~~A-~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~   87 (298)
T KOG2304|consen   10 EIKNVAIVGAGQMGSGIAQVA-ATSGLNVWLVDANEDALSRA-TKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTS   87 (298)
T ss_pred             cccceEEEcccccchhHHHHH-HhcCCceEEecCCHHHHHHH-HHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHc
Confidence            456899999999999999985 57899999999987543222 2221111    1111 111111           1123


Q ss_pred             CCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          228 SSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       228 ~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lI-NvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      .++.++.+.+|+|+-.+--+-+.+.-+-++.=...|+.++|. |++.   +...++..+++. +-+.++|-.|.+-|
T Consensus        88 tnv~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSS---l~lt~ia~~~~~-~srf~GlHFfNPvP  160 (298)
T KOG2304|consen   88 TNVSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSS---LSLTDIASATQR-PSRFAGLHFFNPVP  160 (298)
T ss_pred             CCHHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccc---eeHHHHHhhccC-hhhhceeeccCCch
Confidence            456677777888776554443333333333334556776665 3443   455677888775 56679999998888

>PRK06444 prephenate dehydrogenase; Provisional

Probab=95.51  E-value=0.021  Score=50.90  Aligned_cols=27  Identities=19%  Similarity=0.429  Sum_probs=23.8

Q ss_pred             eEEEEec-CHHHHHHHHHHHhcCCcEEEE
Q 019387          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIY  194 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~~afg~~V~~  194 (342)
                      +++|||- |.||+.+++.| +..|..|..
T Consensus         2 ~~~iiG~~G~mG~~~~~~~-~~~g~~v~~   29 (197)
T PRK06444          2 MEIIIGKNGRLGRVLCSIL-DDNGLGVYI   29 (197)
T ss_pred             EEEEEecCCcHHHHHHHHH-HhCCCEEEE
Confidence            7899998 99999999998 788988853

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=95.51  E-value=0.15  Score=51.59  Aligned_cols=115  Identities=16%  Similarity=0.129  Sum_probs=70.6

Q ss_pred             ccCCCeEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhh----hhhccC------CCC
Q 019387          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ----FLKANG------EQP  221 (342)
Q Consensus       162 ~L~gktvgIvG~----------G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~----~~~~~~------~~~  221 (342)
                      .+.|++|+|+|+          ..-...+++.| ...|.+|.+|||.......  ...++.    |.....      ..+
T Consensus       321 ~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L-~~~G~~V~~~DP~v~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~  397 (473)
T PLN02353        321 TVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGL-LGDKAKLSIYDPQVTEEQI--QRDLSMNKFDWDHPRHLQPMSPTAV  397 (473)
T ss_pred             ccCCCEEEEEeeeecCCCCccccChHHHHHHHH-HhCCCEEEEECCCCChHHH--HHHhhcccccccccccccccccccc
Confidence            588999999998          55778899987 6789999999998543111  001100    000000      000


Q ss_pred             ccccccCCHHHHhhcCCEEEEcCCCCcccccccCHH-HHhcCCCCcEEEEcCCCcccCHHHHH
Q 019387          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE-RLATMKKEAILVNCSRGPVIDEVALV  283 (342)
Q Consensus       222 ~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~-~l~~mk~ga~lINvaRG~~vd~~aL~  283 (342)
                      .......++++.+++||+|+++.+- ++-+. ++-+ ....|++..+++|. |+ ++|.+.+.
T Consensus       398 ~~~~~~~~~~~a~~~aD~vvi~t~~-~ef~~-l~~~~~~~~m~~~~~viD~-rn-~l~~~~~~  456 (473)
T PLN02353        398 KQVSVVWDAYEATKGAHGICILTEW-DEFKT-LDYQKIYDNMQKPAFVFDG-RN-VLDHEKLR  456 (473)
T ss_pred             cceeeeCCHHHHhcCCCEEEECCCC-hHhcc-cCHHHHHHhccCCCEEEEC-CC-CCCHHHHH
Confidence            0122345667899999999999874 33333 3433 35567766688885 54 45766554

>PRK04523 N-acetylornithine carbamoyltransferase; Reviewed

Probab=95.50  E-value=1.1  Score=43.19  Aligned_cols=78  Identities=12%  Similarity=0.077  Sum_probs=47.7

Q ss_pred             c-CCCeEEEEecC-------HHHHHHHHHHHhcCCcEEEEEcC-CchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH
Q 019387          163 L-KGQTVGVIGAG-------RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (342)
Q Consensus       163 L-~gktvgIvG~G-------~IG~~vA~~l~~afg~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  233 (342)
                      + .|++|+|+|.|       ++.++++..+ ..||++|.+..| ..-...+...+.........+   ..+....++++.
T Consensus       166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g---~~~~~~~d~~ea  241 (335)
T PRK04523        166 TLRGKKYVLTWTYHPKPLNTAVANSALLIA-TRLGMDVTLLCPTPDYILDERYMDWAEQNAAESG---GSLTVSHDIDSA  241 (335)
T ss_pred             ccCCCEEEEEEeccCcccccHHHHHHHHHH-HHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            5 68999887654       7888888876 579999999988 321111111110000111111   123345799999


Q ss_pred             hhcCCEEEEcC
Q 019387          234 LREADVISLHP  244 (342)
Q Consensus       234 l~~aDiV~l~~  244 (342)
                      ++++|+|..-.
T Consensus       242 ~~~aDvvy~~~  252 (335)
T PRK04523        242 YAGADVVYAKS  252 (335)
T ss_pred             hCCCCEEEece
Confidence            99999997644

>TIGR00036 dapB dihydrodipicolinate reductase

Probab=95.50  E-value=0.059  Score=50.32  Aligned_cols=73  Identities=18%  Similarity=0.255  Sum_probs=44.5

Q ss_pred             eEEEEe-cCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvgIvG-~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      +|+|+| +|+||+.+++.+...-++++.+ +|+..+........   ..   .+..+.++....+++++...+|+|+.+.
T Consensus         3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~---~~---~~~~~~gv~~~~d~~~l~~~~DvVIdfT   76 (266)
T TIGR00036         3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFERHGSSLQGTDAG---EL---AGIGKVGVPVTDDLEAVETDPDVLIDFT   76 (266)
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccCCCHH---Hh---cCcCcCCceeeCCHHHhcCCCCEEEECC
Confidence            799999 7999999999875446888775 67432211000000   00   0111112334578888866789999987


Q ss_pred             C
Q 019387          245 V  245 (342)
Q Consensus       245 p  245 (342)
                      |
T Consensus        77 ~   77 (266)
T TIGR00036        77 T   77 (266)
T ss_pred             C
Confidence            5

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=95.47  E-value=0.068  Score=50.83  Aligned_cols=125  Identities=14%  Similarity=0.115  Sum_probs=70.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      .+|+|+|.|.||.-+|-.|+ ..|.+|..+++..+ +.+.....-+..+...+.. ..+.....-.+.....|+|++|+-
T Consensus         3 m~I~IiGaGaiG~~~a~~L~-~~G~~V~lv~r~~~-~~~~i~~~~Gl~i~~~g~~-~~~~~~~~~~~~~~~~D~viv~vK   79 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLA-RAGLPVRLILRDRQ-RLAAYQQAGGLTLVEQGQA-SLYAIPAETADAAEPIHRLLLACK   79 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHH-hCCCCeEEEEechH-HHHHHhhcCCeEEeeCCcc-eeeccCCCCcccccccCEEEEECC
Confidence            47999999999999999984 56999999998652 2332221100011111111 111100111123467899999985


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaL  296 (342)
                      .. ++...+ +.....+.+++.+|-.--| +-.++.+.+.+.+.++.++..
T Consensus        80 ~~-~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g~~  127 (305)
T PRK05708         80 AY-DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFASS  127 (305)
T ss_pred             HH-hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEEEe
Confidence            32 333332 2344456778877766444 345566777776556655443

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=95.46  E-value=0.031  Score=44.70  Aligned_cols=89  Identities=18%  Similarity=0.284  Sum_probs=52.6

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC---HHH-HhhcCCEEEEc
Q 019387          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDE-VLREADVISLH  243 (342)
Q Consensus       168 vgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~-ll~~aDiV~l~  243 (342)
                      |-|+|+|.+|+.+++.| +..+.+|++.|..++.. +....        .+.... .-...+   |++ =+.++|.|+++
T Consensus         1 vvI~G~g~~~~~i~~~L-~~~~~~vvvid~d~~~~-~~~~~--------~~~~~i-~gd~~~~~~l~~a~i~~a~~vv~~   69 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQL-KEGGIDVVVIDRDPERV-EELRE--------EGVEVI-YGDATDPEVLERAGIEKADAVVIL   69 (116)
T ss_dssp             EEEES-SHHHHHHHHHH-HHTTSEEEEEESSHHHH-HHHHH--------TTSEEE-ES-TTSHHHHHHTTGGCESEEEEE
T ss_pred             eEEEcCCHHHHHHHHHH-HhCCCEEEEEECCcHHH-HHHHh--------cccccc-cccchhhhHHhhcCccccCEEEEc
Confidence            57999999999999998 56667999999987542 22111        111101 011122   222 25789999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEE
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILV  269 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lI  269 (342)
                      .+..  ..++.-...++.+.+...+|
T Consensus        70 ~~~d--~~n~~~~~~~r~~~~~~~ii   93 (116)
T PF02254_consen   70 TDDD--EENLLIALLARELNPDIRII   93 (116)
T ss_dssp             SSSH--HHHHHHHHHHHHHTTTSEEE
T ss_pred             cCCH--HHHHHHHHHHHHHCCCCeEE
Confidence            8743  34444445556555555554

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=95.46  E-value=0.18  Score=45.56  Aligned_cols=98  Identities=20%  Similarity=0.186  Sum_probs=61.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC-ccccccCCHHH-H----hhcC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDE-V----LREA  237 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~-l----l~~a  237 (342)
                      .|++|.|.|.|.+|+.+++.+ +..|.+|++.++..... +. ...+       +... ..... .+..+ +    -...
T Consensus       134 ~~~~vli~g~~~~G~~~~~~a-~~~g~~v~~~~~~~~~~-~~-~~~~-------g~~~~~~~~~-~~~~~~~~~~~~~~~  202 (271)
T cd05188         134 PGDTVLVLGAGGVGLLAAQLA-KAAGARVIVTDRSDEKL-EL-AKEL-------GADHVIDYKE-EDLEEELRLTGGGGA  202 (271)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEcCCHHHH-HH-HHHh-------CCceeccCCc-CCHHHHHHHhcCCCC
Confidence            578999999999999999984 89999999998875432 11 1111       1000 00001 11221 1    2458


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCccc
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v  277 (342)
                      |+++.+.+..     ..-...++.|+++..+++++.....
T Consensus       203 d~vi~~~~~~-----~~~~~~~~~l~~~G~~v~~~~~~~~  237 (271)
T cd05188         203 DVVIDAVGGP-----ETLAQALRLLRPGGRIVVVGGTSGG  237 (271)
T ss_pred             CEEEECCCCH-----HHHHHHHHhcccCCEEEEEccCCCC
Confidence            9998887631     1234567888999999998866543

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed

Probab=95.46  E-value=0.023  Score=55.53  Aligned_cols=68  Identities=19%  Similarity=0.339  Sum_probs=45.0

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .++|||||-|..|+.++.. ++.+|.+|+++|+.+........+        .. ....+.....+.++++.||+|+.
T Consensus         2 ~~~igilG~Gql~~ml~~a-a~~lG~~v~~~d~~~~~pa~~~ad--------~~-~~~~~~D~~~l~~~a~~~dvit~   69 (372)
T PRK06019          2 MKTIGIIGGGQLGRMLALA-AAPLGYKVIVLDPDPDSPAAQVAD--------EV-IVADYDDVAALRELAEQCDVITY   69 (372)
T ss_pred             CCEEEEECCCHHHHHHHHH-HHHcCCEEEEEeCCCCCchhHhCc--------eE-EecCCCCHHHHHHHHhcCCEEEe
Confidence            4799999999999999998 488999999999886542111100        00 00011122356777888888753

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=95.46  E-value=0.039  Score=54.99  Aligned_cols=74  Identities=16%  Similarity=0.253  Sum_probs=48.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhh-hhhhccCCCCccccccCCHHHH-hhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG-QFLKANGEQPVTWKRASSMDEV-LREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l-l~~aDiV~l~  243 (342)
                      ++|.|+|+|.+|+.+|+.| ...|.+|+++|++++.. +...+..+ .+..  +    .......++++ +.++|.|+++
T Consensus         1 m~viIiG~G~ig~~~a~~L-~~~g~~v~vid~~~~~~-~~~~~~~~~~~~~--g----d~~~~~~l~~~~~~~a~~vi~~   72 (453)
T PRK09496          1 MKIIIVGAGQVGYTLAENL-SGENNDVTVIDTDEERL-RRLQDRLDVRTVV--G----NGSSPDVLREAGAEDADLLIAV   72 (453)
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCcEEEEECCHHHH-HHHHhhcCEEEEE--e----CCCCHHHHHHcCCCcCCEEEEe
Confidence            3789999999999999997 67899999999877542 22111000 0000  0    01112345555 7889999999


Q ss_pred             CCCC
Q 019387          244 PVLD  247 (342)
Q Consensus       244 ~pl~  247 (342)
                      ++..
T Consensus        73 ~~~~   76 (453)
T PRK09496         73 TDSD   76 (453)
T ss_pred             cCCh
Confidence            8753

>PRK08300 acetaldehyde dehydrogenase; Validated

Probab=95.44  E-value=0.088  Score=50.01  Aligned_cols=101  Identities=13%  Similarity=0.141  Sum_probs=60.7

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCCHHHHhh-----cC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLR-----EA  237 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~-----~a  237 (342)
                      ..++||||.|+||+..+..+.+.-++++. ++|+.++....++-..+       +     +. ...++++++.     +.
T Consensus         4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~-------G-----i~~~~~~ie~LL~~~~~~dI   71 (302)
T PRK08300          4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRL-------G-----VATSAEGIDGLLAMPEFDDI   71 (302)
T ss_pred             CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHc-------C-----CCcccCCHHHHHhCcCCCCC
Confidence            35899999999999977665444467766 46776643221111111       1     11 2357888885     58


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC---CCcc----cCHHHH
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS---RGPV----IDEVAL  282 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva---RG~~----vd~~aL  282 (342)
                      |+|+.+.|..  .+.   +-.....+.|..+|+-+   +|++    |+.+++
T Consensus        72 DiVf~AT~a~--~H~---e~a~~a~eaGk~VID~sPA~~~PlvVP~VN~~~~  118 (302)
T PRK08300         72 DIVFDATSAG--AHV---RHAAKLREAGIRAIDLTPAAIGPYCVPAVNLDEH  118 (302)
T ss_pred             CEEEECCCHH--HHH---HHHHHHHHcCCeEEECCccccCCcccCcCCHHHH
Confidence            8899998742  221   12223346788888865   5655    455544

>COG5322 Predicted dehydrogenase [General function prediction only]

Probab=95.42  E-value=0.054  Score=50.22  Aligned_cols=108  Identities=20%  Similarity=0.188  Sum_probs=66.1

Q ss_pred             cccccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387          159 VGNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       159 ~~~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                      .|.+|...|++|+|+ |.||..+||+|+ +-++.....-+....+.....    .+++.    +.+-....+++..+.+.
T Consensus       161 lGidlsqatvaivGa~G~Ia~~Iar~la-~~~~~~~ll~r~aea~~rq~l----~~l~e----~~~~~~i~s~d~~~~~e  231 (351)
T COG5322         161 LGIDLSQATVAIVGATGDIASAIARWLA-PKVGVKELLLRDAEARNRQRL----TLLQE----ELGRGKIMSLDYALPQE  231 (351)
T ss_pred             hCcCHHHCeEEEecCCchHHHHHHHHhc-cccCEEEEecccHHhhhhhhh----hhccc----ccCCCeeeecccccccc
Confidence            468899999999997 999999999984 666654443322221111100    01111    11112235677666777


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~  280 (342)
                      |+++-....  .+-..|+..   ++|||+.+|+-++..=+|+.
T Consensus       232 ~i~v~vAs~--~~g~~I~pq---~lkpg~~ivD~g~P~dvd~~  269 (351)
T COG5322         232 DILVWVASM--PKGVEIFPQ---HLKPGCLIVDGGYPKDVDTS  269 (351)
T ss_pred             ceEEEEeec--CCCceechh---hccCCeEEEcCCcCcccccc
Confidence            776544322  234566664   47899999999998877664

>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]

Probab=95.41  E-value=0.14  Score=48.19  Aligned_cols=118  Identities=18%  Similarity=0.216  Sum_probs=74.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      ....|+++.|+|-|..+++++..| ...|+ +|++++|..++ .++..+.+..    .+. ........+++.. .++|+
T Consensus       122 ~~~~~~~vlilGAGGAarAv~~aL-~~~g~~~i~V~NRt~~r-a~~La~~~~~----~~~-~~~~~~~~~~~~~-~~~dl  193 (283)
T COG0169         122 VDVTGKRVLILGAGGAARAVAFAL-AEAGAKRITVVNRTRER-AEELADLFGE----LGA-AVEAAALADLEGL-EEADL  193 (283)
T ss_pred             cccCCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhhh----ccc-ccccccccccccc-cccCE
Confidence            345799999999999999999997 57785 79999998754 2332222211    110 0001111222222 26999


Q ss_pred             EEEcCCCCcccc---cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          240 ISLHPVLDKTTY---HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       240 V~l~~pl~~~t~---~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      |+.++|..-.-.   .+++   .+.++++.++.++--.+. ++.=|..|=+.|.
T Consensus       194 iINaTp~Gm~~~~~~~~~~---~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G~  243 (283)
T COG0169         194 LINATPVGMAGPEGDSPVP---AELLPKGAIVYDVVYNPL-ETPLLREARAQGA  243 (283)
T ss_pred             EEECCCCCCCCCCCCCCCc---HHhcCcCCEEEEeccCCC-CCHHHHHHHHcCC
Confidence            999999754432   1334   567889999999977765 4444555544453

>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]

Probab=95.30  E-value=0.074  Score=53.17  Aligned_cols=132  Identities=20%  Similarity=0.198  Sum_probs=78.7

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ..|++|.|+|+|.-|.++|+.| ...|++|+++|.++..........        ......+..-.-..+.+..+|+|+.
T Consensus         5 ~~~~kv~V~GLG~sG~a~a~~L-~~~G~~v~v~D~~~~~~~~~~~~~--------~~~~i~~~~g~~~~~~~~~~d~vV~   75 (448)
T COG0771           5 FQGKKVLVLGLGKSGLAAARFL-LKLGAEVTVSDDRPAPEGLAAQPL--------LLEGIEVELGSHDDEDLAEFDLVVK   75 (448)
T ss_pred             ccCCEEEEEecccccHHHHHHH-HHCCCeEEEEcCCCCccchhhhhh--------hccCceeecCccchhccccCCEEEE
Confidence            3499999999999999999998 688999999997765411100000        0000001000111156788999998


Q ss_pred             cCCCCcccc----------cccCHH-HHhcC--CCCcEEEEcCCCcccCHHHHHHHHHc--------CCceEEEEecCCC
Q 019387          243 HPVLDKTTY----------HLINKE-RLATM--KKEAILVNCSRGPVIDEVALVEHLKQ--------NPMFRVGLDVFEV  301 (342)
Q Consensus       243 ~~pl~~~t~----------~li~~~-~l~~m--k~ga~lINvaRG~~vd~~aL~~aL~~--------g~i~~aaLDV~~~  301 (342)
                      ..-..+.+.          .++++- .|-+.  +.-.+-|.-+-|..-.+.-+...|++        |.|...++|+.++
T Consensus        76 SPGi~~~~p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~  155 (448)
T COG0771          76 SPGIPPTHPLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQ  155 (448)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhcc
Confidence            743322222          233322 22222  22255555567887766666665554        6678888999987


Q ss_pred             CC
Q 019387          302 TE  303 (342)
Q Consensus       302 EP  303 (342)
                      ++
T Consensus       156 ~~  157 (448)
T COG0771         156 AE  157 (448)
T ss_pred             cC
Confidence            44

>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins

Probab=95.30  E-value=0.072  Score=44.56  Aligned_cols=31  Identities=23%  Similarity=0.318  Sum_probs=26.7

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~  198 (342)
                      +|.|+|+|.+|..+|+.|+ ..|. ++..+|..
T Consensus         1 ~VliiG~GglGs~ia~~L~-~~Gv~~i~ivD~d   32 (143)
T cd01483           1 RVLLVGLGGLGSEIALNLA-RSGVGKITLIDFD   32 (143)
T ss_pred             CEEEECCCHHHHHHHHHHH-HCCCCEEEEEcCC
Confidence            5899999999999999985 6777 68888865

This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.

>PRK06392 homoserine dehydrogenase; Provisional

Probab=95.27  E-value=0.06  Score=51.80  Aligned_cols=116  Identities=13%  Similarity=0.192  Sum_probs=64.4

Q ss_pred             eEEEEecCHHHHHHHHHHHh-------cCCcEEEE-EcCCchhH------HHHHHhhhhhhhhccCCCCcccc-ccCCHH
Q 019387          167 TVGVIGAGRIGSAYARMMVE-------GFKMNLIY-YDLYQATR------LEKFVTAYGQFLKANGEQPVTWK-RASSMD  231 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~-------afg~~V~~-~d~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~  231 (342)
                      +|+|+|||+||+.+++.|.+       +++.+|.+ .|++..-.      .+.+.+    +... +.. ..+. ...+++
T Consensus         2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~----~~~~-g~l-~~~~~~~~~~~   75 (326)
T PRK06392          2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIIS----YKEK-GRL-EEIDYEKIKFD   75 (326)
T ss_pred             EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHH----HHhc-Ccc-ccCCCCcCCHH
Confidence            79999999999999998743       26777664 45442110      001000    0000 100 0000 011456


Q ss_pred             HHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcC
Q 019387          232 EVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQN  289 (342)
Q Consensus       232 ~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v-d~~aL~~aL~~g  289 (342)
                      +++ .++|+|+=|.|.+ ++-.-.-.-....++.|.-+|-..-|.+. .-+.|.++.+++
T Consensus        76 ~ll~~~~DVvVE~t~~~-~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~  134 (326)
T PRK06392         76 EIFEIKPDVIVDVTPAS-KDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKN  134 (326)
T ss_pred             HHhcCCCCEEEECCCCC-CcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHc
Confidence            554 4689999999853 22111123345667788888888877775 445565655544

>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases

Probab=95.24  E-value=0.081  Score=50.31  Aligned_cols=107  Identities=21%  Similarity=0.302  Sum_probs=61.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      ++|+|+|.|.+|+.+|..|+ ..|  -++..+|+.++.. +.....+.......+ ..... ...+.+ .+++||+|+++
T Consensus         1 ~kI~IIGaG~vG~~~a~~l~-~~g~~~ei~l~D~~~~~~-~~~a~dL~~~~~~~~-~~~~i-~~~~~~-~l~~aDIVIit   75 (306)
T cd05291           1 RKVVIIGAGHVGSSFAYSLV-NQGIADELVLIDINEEKA-EGEALDLEDALAFLP-SPVKI-KAGDYS-DCKDADIVVIT   75 (306)
T ss_pred             CEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCcchh-hHhHhhHHHHhhccC-CCeEE-EcCCHH-HhCCCCEEEEc
Confidence            47999999999999999874 556  4899999976542 221111100000000 01111 123444 47899999999


Q ss_pred             CCCCcc---cc--------cccC--HHHHhcCCCCcEEEEcCCCcccCH
Q 019387          244 PVLDKT---TY--------HLIN--KERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       244 ~pl~~~---t~--------~li~--~~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      ......   ++        .++.  ...+....+.+++|+++  ..+|.
T Consensus        76 ag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d~  122 (306)
T cd05291          76 AGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVDV  122 (306)
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHHH
Confidence            765211   11        1121  13455556788999997  44443

L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine

>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=95.23  E-value=0.2  Score=49.90  Aligned_cols=117  Identities=21%  Similarity=0.211  Sum_probs=69.6

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc-CCEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-ADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-aDiV~  241 (342)
                      +.||++.|+|.|.+|.++|+.| ...|++|.++|.......+. ...    +...+..   ........+++.. .|+|+
T Consensus         3 ~~~k~v~v~G~g~~G~s~a~~l-~~~G~~V~~~d~~~~~~~~~-~~~----l~~~g~~---~~~~~~~~~~~~~~~d~vV   73 (447)
T PRK02472          3 YQNKKVLVLGLAKSGYAAAKLL-HKLGANVTVNDGKPFSENPE-AQE----LLEEGIK---VICGSHPLELLDEDFDLMV   73 (447)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCCccchhH-HHH----HHhcCCE---EEeCCCCHHHhcCcCCEEE
Confidence            5789999999999999999998 68899999999765321111 000    1111111   1100112234444 89888


Q ss_pred             EcCCCCcc----------cccccCHHHH-hcC-CCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          242 LHPVLDKT----------TYHLINKERL-ATM-KKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~~pl~~~----------t~~li~~~~l-~~m-k~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ...-..+.          ...++.+..| ..+ +...+-|--+.|..-...-|...|+.
T Consensus        74 ~s~gi~~~~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~  132 (447)
T PRK02472         74 KNPGIPYTNPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA  132 (447)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            76522222          1233444333 233 34456677789998888888888865

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=95.22  E-value=0.073  Score=51.19  Aligned_cols=45  Identities=18%  Similarity=0.256  Sum_probs=30.1

Q ss_pred             eEEEEecCHHHHHHHHHHHhcC----CcEEEEEcCCchhHHHHHHhhhhh
Q 019387          167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQ  212 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~af----g~~V~~~d~~~~~~~~~~~~~~~~  212 (342)
                      +|||+|+|+||+.+.+.+ ...    +++|...+.....+...+...|++
T Consensus         1 ~IaInGfGrIGR~vlr~l-~e~~~~~~~~vvaInd~~~~~~~ayll~yDS   49 (325)
T TIGR01532         1 RVAINGFGRIGRNVLRAL-YESGERLGIEVVALNELADQASMAHLLRYDT   49 (325)
T ss_pred             CEEEECCCHHHHHHHHHH-HhcCCCCCeEEEEEecCCCHHHHHHHHhhCc
Confidence            589999999999999986 333    378776554333444444444543

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>cd01487 E1_ThiF_like E1_ThiF_like

Probab=95.19  E-value=0.047  Score=47.64  Aligned_cols=88  Identities=19%  Similarity=0.295  Sum_probs=53.6

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch---h--------------HHHHHHhhhhhhhhccCCCCcccc---
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA---T--------------RLEKFVTAYGQFLKANGEQPVTWK---  225 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~---~--------------~~~~~~~~~~~~~~~~~~~~~~~~---  225 (342)
                      +|+|+|.|.+|..+|+.|+ ..|. ++..+|...-   .              +.+....    .+++-. +...+.   
T Consensus         1 ~VlViG~GglGs~ia~~La-~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~----~l~~ln-p~v~i~~~~   74 (174)
T cd01487           1 KVGIAGAGGLGSNIAVLLA-RSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKE----NLREIN-PFVKIEAIN   74 (174)
T ss_pred             CEEEECcCHHHHHHHHHHH-HcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHH----HHHHHC-CCCEEEEEE
Confidence            5899999999999999985 5677 5888887641   0              1010000    010000 001110   


Q ss_pred             ---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          226 ---RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       226 ---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                         ...+++++++++|+|+.|. .+.+++..++....+.
T Consensus        75 ~~~~~~~~~~~l~~~DlVi~~~-d~~~~r~~i~~~~~~~  112 (174)
T cd01487          75 IKIDENNLEGLFGDCDIVVEAF-DNAETKAMLAESLLGN  112 (174)
T ss_pred             eecChhhHHHHhcCCCEEEECC-CCHHHHHHHHHHHHHH
Confidence               1134567889999999995 4677887777666554

Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB

Probab=95.13  E-value=0.055  Score=49.75  Aligned_cols=96  Identities=19%  Similarity=0.294  Sum_probs=59.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH------------------HHHHHhhhhhhhhccCCCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR------------------LEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~------------------~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|...-..                  .+...+...+.   .....
T Consensus        20 ~~L~~~~VlvvG~GglGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~i---np~v~   95 (240)
T TIGR02355        20 EALKASRVLIVGLGGLGCAASQYLA-AAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKVESAKDALTQI---NPHIA   95 (240)
T ss_pred             HHHhCCcEEEECcCHHHHHHHHHHH-HcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHHHHHHHHHHHH---CCCcE
Confidence            4689999999999999999999985 5666 677777543210                  00000000000   00000


Q ss_pred             c-ccc-c--cCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          222 V-TWK-R--ASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       222 ~-~~~-~--~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      . ... .  ..++++++.++|+|+.|.. +.+++..+++...+.
T Consensus        96 i~~~~~~i~~~~~~~~~~~~DlVvd~~D-~~~~r~~ln~~~~~~  138 (240)
T TIGR02355        96 INPINAKLDDAELAALIAEHDIVVDCTD-NVEVRNQLNRQCFAA  138 (240)
T ss_pred             EEEEeccCCHHHHHHHhhcCCEEEEcCC-CHHHHHHHHHHHHHc
Confidence            0 000 1  1246678899999999984 678888888776654

This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).

>PRK11579 putative oxidoreductase; Provisional

Probab=95.07  E-value=0.063  Score=51.86  Aligned_cols=67  Identities=18%  Similarity=0.190  Sum_probs=44.6

Q ss_pred             CeEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEE
Q 019387          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~-vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~  241 (342)
                      -+|||||+|.||+. .+..+.+.-++++. ++|+.++.. .   +.+       .    ....+.+++++++  +-|+|+
T Consensus         5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~~-~---~~~-------~----~~~~~~~~~ell~~~~vD~V~   69 (346)
T PRK11579          5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATKV-K---ADW-------P----TVTVVSEPQHLFNDPNIDLIV   69 (346)
T ss_pred             ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHHH-H---hhC-------C----CCceeCCHHHHhcCCCCCEEE
Confidence            38999999999985 45655333478887 478765432 1   111       0    1123579999996  469999


Q ss_pred             EcCCCC
Q 019387          242 LHPVLD  247 (342)
Q Consensus       242 l~~pl~  247 (342)
                      +|.|..
T Consensus        70 I~tp~~   75 (346)
T PRK11579         70 IPTPND   75 (346)
T ss_pred             EcCCcH
Confidence            999954

>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=95.06  E-value=0.15  Score=49.89  Aligned_cols=68  Identities=24%  Similarity=0.359  Sum_probs=51.0

Q ss_pred             cCCCeEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH
Q 019387          163 LKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (342)
Q Consensus       163 L~gktvgIvG~G----------~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  232 (342)
                      |.||+|||+|+-          .-...++++| +..|++|.+|||........   .+          + ......++++
T Consensus       308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L-~~~Ga~V~aYDP~a~~~~~~---~~----------~-~~~~~~~~~~  372 (414)
T COG1004         308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRL-QEKGAEVIAYDPVAMENAFR---NF----------P-DVELESDAEE  372 (414)
T ss_pred             CCCcEEEEEEEeecCCCccchhchHHHHHHHH-HHCCCEEEEECchhhHHHHh---cC----------C-CceEeCCHHH
Confidence            899999999983          4567788887 78999999999976432111   00          0 2345689999


Q ss_pred             HhhcCCEEEEcCC
Q 019387          233 VLREADVISLHPV  245 (342)
Q Consensus       233 ll~~aDiV~l~~p  245 (342)
                      ++++||.++++.-
T Consensus       373 ~~~~aDaivi~te  385 (414)
T COG1004         373 ALKGADAIVINTE  385 (414)
T ss_pred             HHhhCCEEEEecc
Confidence            9999999998864

>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively

Probab=95.04  E-value=0.057  Score=51.16  Aligned_cols=40  Identities=23%  Similarity=0.342  Sum_probs=29.5

Q ss_pred             CHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       229 ~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .++++++++|+|+.|+. +-++|.+++..-...-|   .+||.+
T Consensus       101 ~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~~~k---~~I~aa  140 (307)
T cd01486         101 RLEELIKDHDVIFLLTD-SRESRWLPTLLSAAKNK---LVINAA  140 (307)
T ss_pred             HHHHHHhhCCEEEECCC-CHHHHHHHHHHHHHhCC---cEEEEE
Confidence            46789999999999994 67888888776554333   566543

This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.

>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase

Probab=94.99  E-value=0.1  Score=53.49  Aligned_cols=114  Identities=17%  Similarity=0.154  Sum_probs=66.3

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDi  239 (342)
                      ..+.||++.|+|.|.+|++++..| ...|++|++++++.+. .+...+.+       +..   .....++.+.. ..+|+
T Consensus       375 ~~~~~k~vlIlGaGGagrAia~~L-~~~G~~V~i~nR~~e~-a~~la~~l-------~~~---~~~~~~~~~~~~~~~di  442 (529)
T PLN02520        375 SPLAGKLFVVIGAGGAGKALAYGA-KEKGARVVIANRTYER-AKELADAV-------GGQ---ALTLADLENFHPEEGMI  442 (529)
T ss_pred             cCCCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHh-------CCc---eeeHhHhhhhccccCeE
Confidence            357899999999999999999998 5789999999987543 22222211       000   01112222222 35788


Q ss_pred             EEEcCCCCcc--cc-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          240 ISLHPVLDKT--TY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       240 V~l~~pl~~~--t~-~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      |+.+.|..-.  +. ..++   ...++++.+++++.-.+. ++.=|.+|-+.|.
T Consensus       443 iINtT~vGm~~~~~~~pl~---~~~l~~~~~v~D~vY~P~-~T~ll~~A~~~G~  492 (529)
T PLN02520        443 LANTTSVGMQPNVDETPIS---KHALKHYSLVFDAVYTPK-ITRLLREAEESGA  492 (529)
T ss_pred             EEecccCCCCCCCCCCccc---HhhCCCCCEEEEeccCCC-cCHHHHHHHHCCC
Confidence            8888875421  11 1132   234666777777765553 2333444444443

>PRK06153 hypothetical protein; Provisional

Probab=94.98  E-value=0.068  Score=52.33  Aligned_cols=112  Identities=17%  Similarity=0.181  Sum_probs=66.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--------------hHH-H--HHHhhhhhhhhccC--CC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--------------TRL-E--KFVTAYGQFLKANG--EQ  220 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~--------------~~~-~--~~~~~~~~~~~~~~--~~  220 (342)
                      ..|.+++|+|||+|.+|..++..|+ ..|. ++..+|...-              ..+ .  ...+.+...+..-.  ..
T Consensus       172 ~kL~~~~VaIVG~GG~GS~Va~~LA-R~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I~  250 (393)
T PRK06153        172 AKLEGQRIAIIGLGGTGSYILDLVA-KTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGIV  250 (393)
T ss_pred             HHHhhCcEEEEcCCccHHHHHHHHH-HcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeEE
Confidence            3689999999999999999999986 5566 7888875411              000 0  01111111111111  00


Q ss_pred             Ccc-ccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387          221 PVT-WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       221 ~~~-~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd  278 (342)
                      ... .-....+ +.+.++|+|+.|+. +.+++.++++....   .|.-+|++|=|-.++
T Consensus       251 ~~~~~I~~~n~-~~L~~~DiV~dcvD-n~~aR~~ln~~a~~---~gIP~Id~G~~l~~~  304 (393)
T PRK06153        251 PHPEYIDEDNV-DELDGFTFVFVCVD-KGSSRKLIVDYLEA---LGIPFIDVGMGLELS  304 (393)
T ss_pred             EEeecCCHHHH-HHhcCCCEEEEcCC-CHHHHHHHHHHHHH---cCCCEEEeeecceec
Confidence            000 0011122 35788999999997 46678888877655   366788887764443

>PRK05600 thiamine biosynthesis protein ThiF; Validated

Probab=94.94  E-value=0.087  Score=51.61  Aligned_cols=96  Identities=19%  Similarity=0.193  Sum_probs=60.6

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh------------------HHHHHHhhhhhhhhccCCCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|+|+|.+|..+++.|+ ..|+ ++..+|...-.                  +.+.........   .....
T Consensus        37 ~~l~~~~VliiG~GglG~~v~~~La-~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~~diG~~Ka~~~~~~l~~~---np~v~  112 (370)
T PRK05600         37 ERLHNARVLVIGAGGLGCPAMQSLA-SAGVGTITLIDDDTVDVSNIHRQILFGASDVGRPKVEVAAERLKEI---QPDIR  112 (370)
T ss_pred             HHhcCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEeCCEEccccccccccCChhHCCCHHHHHHHHHHHHH---CCCCe
Confidence            5689999999999999999999985 6787 78888865210                  111101111000   00000


Q ss_pred             c-ccc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          222 V-TWK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       222 ~-~~~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      . ...   ...+++++++++|+|+.|+. +.+++.++|+...+.
T Consensus       113 i~~~~~~i~~~~~~~~~~~~DlVid~~D-n~~~r~~in~~~~~~  155 (370)
T PRK05600        113 VNALRERLTAENAVELLNGVDLVLDGSD-SFATKFLVADAAEIT  155 (370)
T ss_pred             eEEeeeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence            1 000   11356688999999988875 678888888765554

>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.86  E-value=0.11  Score=52.73  Aligned_cols=118  Identities=16%  Similarity=0.138  Sum_probs=68.3

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh-HHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +.+++|.|+|+|..|.++|+.| +..|.+|.++|..... ..... .       ..+. ...+.......+.+.++|+|+
T Consensus         5 ~~~~~i~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~L-~-------~~~~-~~~~~~g~~~~~~~~~~d~vv   74 (498)
T PRK02006          5 LQGPMVLVLGLGESGLAMARWC-ARHGARLRVADTREAPPNLAAL-R-------AELP-DAEFVGGPFDPALLDGVDLVA   74 (498)
T ss_pred             cCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEEcCCCCchhHHHH-H-------hhcC-CcEEEeCCCchhHhcCCCEEE
Confidence            5688999999999999999997 7899999999976532 11111 0       1110 001111111234556899998


Q ss_pred             Ec--CCCC-----cc-------cccccCHHH-H-hcC--------CCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          242 LH--PVLD-----KT-------TYHLINKER-L-ATM--------KKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       242 l~--~pl~-----~~-------t~~li~~~~-l-~~m--------k~ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      ..  +|.+     |.       ...+++... + ..+        ++..+-|-=+-|..-...-|.+.|++..
T Consensus        75 ~sp~I~~~~~~~~~~~~~a~~~~i~v~~~~e~~~~~~~~l~~~~~~~~~I~VTGTnGKTTTt~ml~~iL~~~g  147 (498)
T PRK02006         75 LSPGLSPLEAALAPLVAAARERGIPVWGEIELFAQALAALGASGYAPKVLAITGTNGKTTTTALTGLLCERAG  147 (498)
T ss_pred             ECCCCCCcccccCHHHHHHHHCCCcEEEHHHHHHHHHhhhccccCCCCEEEEECCCcHHHHHHHHHHHHHHcC
Confidence            86  3332     11       123333222 1 112        1235566667888877777777776533

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=94.84  E-value=0.041  Score=44.43  Aligned_cols=95  Identities=15%  Similarity=0.245  Sum_probs=56.6

Q ss_pred             ecCHHHHHHHHHHHhc---CCcEEEE-EcCC--chhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEEc
Q 019387          172 GAGRIGSAYARMMVEG---FKMNLIY-YDLY--QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (342)
Q Consensus       172 G~G~IG~~vA~~l~~a---fg~~V~~-~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l~  243 (342)
                      |+|+||+.+++.|.+.   +++++.+ ++++  .........              .......++++++.  ..|+|+=|
T Consensus         1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~dvvVE~   66 (117)
T PF03447_consen    1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASF--------------PDEAFTTDLEELIDDPDIDVVVEC   66 (117)
T ss_dssp             --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHH--------------THSCEESSHHHHHTHTT-SEEEE-
T ss_pred             CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhc--------------ccccccCCHHHHhcCcCCCEEEEC
Confidence            8999999999998432   2677774 5666  111111000              01123578999988  99999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL  286 (342)
                      .+.. .    +.+-....++.|.-+|-.+-|.+. ...+++.|
T Consensus        67 t~~~-~----~~~~~~~~L~~G~~VVt~nk~ala-~~~~~~~L  103 (117)
T PF03447_consen   67 TSSE-A----VAEYYEKALERGKHVVTANKGALA-DEALYEEL  103 (117)
T ss_dssp             SSCH-H----HHHHHHHHHHTTCEEEES-HHHHH-SHHHHHHH
T ss_pred             CCch-H----HHHHHHHHHHCCCeEEEECHHHhh-hHHHHHHH
Confidence            5532 2    224456677889999999998888 33344443

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=94.84  E-value=0.072  Score=50.84  Aligned_cols=46  Identities=22%  Similarity=0.291  Sum_probs=32.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYG  211 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~  211 (342)
                      -+|||=|||+||+.+++.+...- .++|++.+.-.+....++...|+
T Consensus         2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyD   48 (335)
T COG0057           2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYD   48 (335)
T ss_pred             cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhc
Confidence            37999999999999999974334 49999876533333444444443

>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases

Probab=94.82  E-value=0.1  Score=49.70  Aligned_cols=98  Identities=20%  Similarity=0.285  Sum_probs=56.8

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCC--CCccccccCCHHHHhhcCCEEEE
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGE--QPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +|+|||.|.+|..+|..|+ ..|  -+|..+|+..........+     +.....  .+... ...+. +.+++||+|++
T Consensus         2 kI~IIGaG~VG~~~a~~l~-~~g~~~ev~l~D~~~~~~~g~a~d-----l~~~~~~~~~~~i-~~~d~-~~l~~aDiVii   73 (308)
T cd05292           2 KVAIVGAGFVGSTTAYALL-LRGLASEIVLVDINKAKAEGEAMD-----LAHGTPFVKPVRI-YAGDY-ADCKGADVVVI   73 (308)
T ss_pred             EEEEECCCHHHHHHHHHHH-HcCCCCEEEEEECCchhhhhHHHH-----HHccccccCCeEE-eeCCH-HHhCCCCEEEE
Confidence            6999999999999999874 556  5899999876432111111     110000  00111 12344 45799999999


Q ss_pred             cCCCCcc---cc--------cccC--HHHHhcCCCCcEEEEcC
Q 019387          243 HPVLDKT---TY--------HLIN--KERLATMKKEAILVNCS  272 (342)
Q Consensus       243 ~~pl~~~---t~--------~li~--~~~l~~mk~ga~lINva  272 (342)
                      +.+....   ++        .++.  .+.+....+.+++++++
T Consensus        74 ta~~~~~~~~~r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~t  116 (308)
T cd05292          74 TAGANQKPGETRLDLLKRNVAIFKEIIPQILKYAPDAILLVVT  116 (308)
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            9886322   11        1121  12334445677888874

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG2344 AT-rich DNA-binding protein [General function prediction only]

Probab=94.81  E-value=0.059  Score=47.35  Aligned_cols=67  Identities=13%  Similarity=0.249  Sum_probs=47.3

Q ss_pred             eEEEEecCHHHHHHHHH-HHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEE
Q 019387          167 TVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~-l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l  242 (342)
                      ++.|||.|++|++++.. +.+..||++. +||..++.. -.            ...+..+...++|++.++  +.|+.++
T Consensus        86 nviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~V-G~------------~~~~v~V~~~d~le~~v~~~dv~iaiL  152 (211)
T COG2344          86 NVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKV-GT------------KIGDVPVYDLDDLEKFVKKNDVEIAIL  152 (211)
T ss_pred             eEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHh-Cc------------ccCCeeeechHHHHHHHHhcCccEEEE
Confidence            69999999999999963 2245688866 689877531 11            112244556678888888  5677899


Q ss_pred             cCCC
Q 019387          243 HPVL  246 (342)
Q Consensus       243 ~~pl  246 (342)
                      |+|.
T Consensus       153 tVPa  156 (211)
T COG2344         153 TVPA  156 (211)
T ss_pred             EccH
Confidence            9994

>COG0281 SfcA Malic enzyme [Energy production and conversion]

Probab=94.76  E-value=0.26  Score=48.54  Aligned_cols=171  Identities=19%  Similarity=0.136  Sum_probs=107.0

Q ss_pred             hCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHh
Q 019387          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~  186 (342)
                      +..|+|.|+--.   .+|=.+++-+++.+|-                     .|+.|...+|.+.|.|.-|-.+++.| .
T Consensus       165 ~~~IPvFhDDqq---GTaiv~lA~llnalk~---------------------~gk~l~d~kiv~~GAGAAgiaia~~l-~  219 (432)
T COG0281         165 RMNIPVFHDDQQ---GTAIVTLAALLNALKL---------------------TGKKLKDQKIVINGAGAAGIAIADLL-V  219 (432)
T ss_pred             cCCCCccccccc---HHHHHHHHHHHHHHHH---------------------hCCCccceEEEEeCCcHHHHHHHHHH-H
Confidence            445777776553   4566677777777752                     35678999999999999999999998 7


Q ss_pred             cCCc---EEEEEcCCch---hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387          187 GFKM---NLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       187 afg~---~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~  260 (342)
                      +.|+   +|+.+|+..-   .+.+.....+......+...     .... ++.+..+|+++-+--     .|.|.++.++
T Consensus       220 ~~g~~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~-----~~~~-~~~~~~adv~iG~S~-----~G~~t~e~V~  288 (432)
T COG0281         220 AAGVKEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTG-----ERTL-DLALAGADVLIGVSG-----VGAFTEEMVK  288 (432)
T ss_pred             HhCCCcccEEEEecCCcccCCCcccccchHHHHHHHhhhc-----cccc-cccccCCCEEEEcCC-----CCCcCHHHHH
Confidence            8888   5888988742   11000000000000000000     0111 447889999986632     2999999999


Q ss_pred             cCCCCcEEEEcCCCcc-cCHHHHHHHHHcC-CceEEEEecCCCCCCCccccccccc
Q 019387          261 TMKKEAILVNCSRGPV-IDEVALVEHLKQN-PMFRVGLDVFEVTELGFSSFKHIST  314 (342)
Q Consensus       261 ~mk~ga~lINvaRG~~-vd~~aL~~aL~~g-~i~~aaLDV~~~EP~~~~~tPhia~  314 (342)
                      .|.+..++.=.+--.. +..++..++ ..| .|-+-+---+.+.=.|++..|.|.-
T Consensus       289 ~Ma~~PiIfalaNP~pEi~Pe~a~~~-~~~aaivaTGrsd~PnQvNNvL~FPgIfr  343 (432)
T COG0281         289 EMAKHPIIFALANPTPEITPEDAKEW-GDGAAIVATGRSDYPNQVNNVLIFPGIFR  343 (432)
T ss_pred             HhccCCEEeecCCCCccCCHHHHhhc-CCCCEEEEeCCCCCcccccceeEcchhhh
Confidence            9999988887765443 233333333 222 4555555555554578899898843

>PRK08328 hypothetical protein; Provisional

Probab=94.76  E-value=0.076  Score=48.51  Aligned_cols=105  Identities=22%  Similarity=0.198  Sum_probs=61.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHH----------------hhhhhhhhccCCCCcc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFV----------------TAYGQFLKANGEQPVT  223 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~  223 (342)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-+. ....                +.....+.. -.+...
T Consensus        23 ~~L~~~~VlIiG~GGlGs~ia~~La-~~Gvg~i~lvD~D~ve~-sNL~Rq~l~~~~dvG~~~k~~~a~~~l~~-~np~v~   99 (231)
T PRK08328         23 EKLKKAKVAVVGVGGLGSPVAYYLA-AAGVGRILLIDEQTPEL-SNLNRQILHWEEDLGKNPKPLSAKWKLER-FNSDIK   99 (231)
T ss_pred             HHHhCCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEcCCccCh-hhhccccccChhhcCchHHHHHHHHHHHH-hCCCCE
Confidence            5689999999999999999999985 6677 677777543110 0000                000000000 000011


Q ss_pred             cc------ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          224 WK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       224 ~~------~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      +.      ...+++++++++|+|+.|+.. .+++.++++...+   .|.-+|+.+
T Consensus       100 v~~~~~~~~~~~~~~~l~~~D~Vid~~d~-~~~r~~l~~~~~~---~~ip~i~g~  150 (231)
T PRK08328        100 IETFVGRLSEENIDEVLKGVDVIVDCLDN-FETRYLLDDYAHK---KGIPLVHGA  150 (231)
T ss_pred             EEEEeccCCHHHHHHHHhcCCEEEECCCC-HHHHHHHHHHHHH---cCCCEEEEe
Confidence            10      123466788999999999854 6788777764433   344455543

>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E

Probab=94.75  E-value=0.31  Score=44.53  Aligned_cols=140  Identities=14%  Similarity=0.145  Sum_probs=74.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHH------------HHhhhhhhhhccCCCCcccc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK------------FVTAYGQFLKANGEQPVTWK  225 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~--~~~------------~~~~~~~~~~~~~~~~~~~~  225 (342)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. +++.+|...-..  +-.            ..+.....+..-. +...+.
T Consensus         7 ~~L~~~~VlVvG~GGvGs~va~~La-r~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~in-P~~~V~   84 (231)
T cd00755           7 EKLRNAHVAVVGLGGVGSWAAEALA-RSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDIN-PECEVD   84 (231)
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHC-CCcEEE
Confidence            3578999999999999999999986 4566 777787543110  000            0000000000000 001111


Q ss_pred             ------ccCCHHHHhh-cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC-----------------HHH
Q 019387          226 ------RASSMDEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID-----------------EVA  281 (342)
Q Consensus       226 ------~~~~l~~ll~-~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd-----------------~~a  281 (342)
                            ...++++++. +.|+|+.|+.. ...+..+++...+.  .=.++...+-|+-.|                 ...
T Consensus        85 ~~~~~i~~~~~~~l~~~~~D~VvdaiD~-~~~k~~L~~~c~~~--~ip~I~s~g~g~~~dp~~i~i~di~~t~~~pla~~  161 (231)
T cd00755          85 AVEEFLTPDNSEDLLGGDPDFVVDAIDS-IRAKVALIAYCRKR--KIPVISSMGAGGKLDPTRIRVADISKTSGDPLARK  161 (231)
T ss_pred             EeeeecCHhHHHHHhcCCCCEEEEcCCC-HHHHHHHHHHHHHh--CCCEEEEeCCcCCCCCCeEEEccEeccccCcHHHH
Confidence                  1134566664 68999999864 44444444432221  123444455555443                 234


Q ss_pred             HHHHHHcCCceEEEEecCCCCCCC
Q 019387          282 LVEHLKQNPMFRVGLDVFEVTELG  305 (342)
Q Consensus       282 L~~aL~~g~i~~aaLDV~~~EP~~  305 (342)
                      +-+.|++..+..-.-=||..|+|.
T Consensus       162 ~R~~Lrk~~~~~~~~~v~S~E~~~  185 (231)
T cd00755         162 VRKRLRKRGIFFGVPVVYSTEPPD  185 (231)
T ss_pred             HHHHHHHcCCCCCeEEEeCCCCCC
Confidence            556677777752233478888743

coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.74  E-value=0.097  Score=52.82  Aligned_cols=119  Identities=17%  Similarity=0.145  Sum_probs=70.5

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..+.+++|.|+|.|.+|.++|+.| ...|.+|.++|............    .+...+..   +..-...+ ....+|+|
T Consensus        12 ~~~~~~~v~viG~G~~G~~~A~~L-~~~G~~V~~~d~~~~~~~~~~~~----~l~~~gv~---~~~~~~~~-~~~~~D~V   82 (480)
T PRK01438         12 SDWQGLRVVVAGLGVSGFAAADAL-LELGARVTVVDDGDDERHRALAA----ILEALGAT---VRLGPGPT-LPEDTDLV   82 (480)
T ss_pred             cCcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCchhhhHHHHH----HHHHcCCE---EEECCCcc-ccCCCCEE
Confidence            457799999999999999999997 68999999999765322111111    01111211   11001111 34569999


Q ss_pred             EEcCCCCcccc----------cccCHHHH--hcCCC----CcEEEEcCCCcccCHHHHHHHHHc
Q 019387          241 SLHPVLDKTTY----------HLINKERL--ATMKK----EAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       241 ~l~~pl~~~t~----------~li~~~~l--~~mk~----ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ++..-..+.+.          .++++..|  ..+++    ..+-|-=+-|..-...=|.+.|+.
T Consensus        83 v~s~Gi~~~~~~~~~a~~~gi~v~~~~e~~~~~~~~~~~~~~I~VTGTnGKTTTt~mi~~iL~~  146 (480)
T PRK01438         83 VTSPGWRPDAPLLAAAADAGIPVWGEVELAWRLRDPDRPAPWLAVTGTNGKTTTVQMLASMLRA  146 (480)
T ss_pred             EECCCcCCCCHHHHHHHHCCCeecchHHHHHHhhhccCCCCEEEEeCCCcHHHHHHHHHHHHHH
Confidence            88864433321          23343332  33422    246666678888877777777765

>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form

Probab=94.71  E-value=0.12  Score=50.02  Aligned_cols=102  Identities=16%  Similarity=0.251  Sum_probs=57.9

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhcC-CcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~af-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .+|+|+|. |.+|+.+++.| ... +.++.+ ++.+... .......+.. .  .+.....+. ..+.++++.++|+|++
T Consensus         1 ~kVaIiGATG~vG~ellr~L-~~hP~~el~~l~~s~~sa-gk~~~~~~~~-l--~~~~~~~~~-~~~~~~~~~~~DvVf~   74 (346)
T TIGR01850         1 IKVAIVGASGYTGGELLRLL-LNHPEVEITYLVSSRESA-GKPVSEVHPH-L--RGLVDLNLE-PIDEEEIAEDADVVFL   74 (346)
T ss_pred             CEEEEECCCCHHHHHHHHHH-HcCCCceEEEEeccchhc-CCChHHhCcc-c--cccCCceee-cCCHHHhhcCCCEEEE
Confidence            37999998 99999999998 455 678774 4544311 0001011100 0  000011111 1245666668999999


Q ss_pred             cCCCCcccccccCHHHHhcC-CCCcEEEEcCCCcccCH
Q 019387          243 HPVLDKTTYHLINKERLATM-KKEAILVNCSRGPVIDE  279 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~m-k~ga~lINvaRG~~vd~  279 (342)
                      |+|..      ...+....+ +.|..+|+.+-.-=.+.
T Consensus        75 alP~~------~s~~~~~~~~~~G~~VIDlS~~fR~~~  106 (346)
T TIGR01850        75 ALPHG------VSAELAPELLAAGVKVIDLSADFRLKD  106 (346)
T ss_pred             CCCch------HHHHHHHHHHhCCCEEEeCChhhhcCC
Confidence            99953      223333333 57899999874443443

This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.

>PRK08223 hypothetical protein; Validated

Probab=94.70  E-value=0.11  Score=48.91  Aligned_cols=100  Identities=13%  Similarity=0.135  Sum_probs=57.9

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HH-------H-----HHhhhhhhhhc-cCCCCcc-
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LE-------K-----FVTAYGQFLKA-NGEQPVT-  223 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~--~~-------~-----~~~~~~~~~~~-~~~~~~~-  223 (342)
                      ..|.+++|.|||+|.+|..+|..|+ ..|. ++..+|...-..  +.       .     ..+.....+.. ....... 
T Consensus        23 ~kL~~s~VlIvG~GGLGs~va~~LA-~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~Kve~a~~~l~~iNP~v~V~~  101 (287)
T PRK08223         23 QRLRNSRVAIAGLGGVGGIHLLTLA-RLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPKAEVLAEMVRDINPELEIRA  101 (287)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHH-HhCCCeEEEEeCCCcchhccccccCcChhHCCCcHHHHHHHHHHHHCCCCEEEE
Confidence            5689999999999999999999985 6676 566666432110  00       0     00000000000 0000010 


Q ss_pred             c---cccCCHHHHhhcCCEEEEcCCCC-cccccccCHHHHhc
Q 019387          224 W---KRASSMDEVLREADVISLHPVLD-KTTYHLINKERLAT  261 (342)
Q Consensus       224 ~---~~~~~l~~ll~~aDiV~l~~pl~-~~t~~li~~~~l~~  261 (342)
                      +   -...+.+++++++|+|+.++..- -+++.++|....+.
T Consensus       102 ~~~~l~~~n~~~ll~~~DlVvD~~D~~~~~~r~~ln~~c~~~  143 (287)
T PRK08223        102 FPEGIGKENADAFLDGVDVYVDGLDFFEFDARRLVFAACQQR  143 (287)
T ss_pred             EecccCccCHHHHHhCCCEEEECCCCCcHHHHHHHHHHHHHc
Confidence            0   01346778899999998887531 26788888765553

>PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases

Probab=94.67  E-value=0.056  Score=42.27  Aligned_cols=66  Identities=20%  Similarity=0.178  Sum_probs=42.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEE-EEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV~l  242 (342)
                      .++.|+|.|+.|++++..+.+..|+++ .++|..+...               +..-.+..-+.+++++.+.  .|+-++
T Consensus         4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~---------------G~~i~gipV~~~~~~l~~~~~i~iaii   68 (96)
T PF02629_consen    4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKI---------------GKEIGGIPVYGSMDELEEFIEIDIAII   68 (96)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTT---------------TSEETTEEEESSHHHHHHHCTTSEEEE
T ss_pred             CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCcc---------------CcEECCEEeeccHHHhhhhhCCCEEEE
Confidence            479999999999999854434456543 4566665421               1111123334577777776  999999


Q ss_pred             cCCC
Q 019387          243 HPVL  246 (342)
Q Consensus       243 ~~pl  246 (342)
                      ++|.
T Consensus        69 ~VP~   72 (96)
T PF02629_consen   69 TVPA   72 (96)
T ss_dssp             ES-H
T ss_pred             EcCH
Confidence            9994

; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D ....

>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=94.62  E-value=0.13  Score=51.66  Aligned_cols=115  Identities=17%  Similarity=0.273  Sum_probs=72.4

Q ss_pred             cCCCeEEEEecCHHHHH-HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~-vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      ..+++|.|+|+|..|.+ +|+.| +..|.+|.++|.......+.. +       ..+..   +....+ .+.+.++|+|+
T Consensus         5 ~~~~~v~viG~G~sG~s~~a~~L-~~~G~~V~~~D~~~~~~~~~l-~-------~~gi~---~~~~~~-~~~~~~~d~vv   71 (461)
T PRK00421          5 RRIKRIHFVGIGGIGMSGLAEVL-LNLGYKVSGSDLKESAVTQRL-L-------ELGAI---IFIGHD-AENIKDADVVV   71 (461)
T ss_pred             CCCCEEEEEEEchhhHHHHHHHH-HhCCCeEEEECCCCChHHHHH-H-------HCCCE---EeCCCC-HHHCCCCCEEE
Confidence            46789999999999999 79997 789999999998765332221 1       11111   111112 34456799998


Q ss_pred             EcCCCCccc----------ccccCHHHH-hc-CC-CCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          242 LHPVLDKTT----------YHLINKERL-AT-MK-KEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       242 l~~pl~~~t----------~~li~~~~l-~~-mk-~ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      ...-..+.+          ..++++..| .. ++ ...+-|-=+-|..-...-+.+.|+...
T Consensus        72 ~spgi~~~~~~~~~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~~g  133 (461)
T PRK00421         72 YSSAIPDDNPELVAARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAEAG  133 (461)
T ss_pred             ECCCCCCCCHHHHHHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            765333321          234555433 33 33 245667778999888887778886543

>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional

Probab=94.60  E-value=0.43  Score=47.65  Aligned_cols=96  Identities=14%  Similarity=0.166  Sum_probs=60.8

Q ss_pred             ccccCCCeEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC
Q 019387          160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       160 ~~~L~gktvgIvG~----------G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      +..+.|++|+|+|+          ..-+..+++.| ...|.+|.+|||........  ..+       +        ...
T Consensus       309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L-~~~g~~V~~~DP~v~~~~~~--~~~-------~--------~~~  370 (425)
T PRK15182        309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKEL-GKYSCKVDIFDPWVDAEEVR--REY-------G--------IIP  370 (425)
T ss_pred             CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHH-HhCCCEEEEECCCCChhHHH--Hhc-------C--------ccc
Confidence            34688999999999          56678899987 68899999999984321110  000       0        011


Q ss_pred             HHH-HhhcCCEEEEcCCCCcccccccCHHHHh-cCCCCcEEEEcCCCcc
Q 019387          230 MDE-VLREADVISLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPV  276 (342)
Q Consensus       230 l~~-ll~~aDiV~l~~pl~~~t~~li~~~~l~-~mk~ga~lINvaRG~~  276 (342)
                      +++ .+..||.|+++..- ++-+. ++-+.+. .||...++|+ +|+-+
T Consensus       371 ~~~~~~~~ad~vvi~t~h-~~f~~-~~~~~~~~~~~~~~~iiD-~r~~~  416 (425)
T PRK15182        371 VSEVKSSHYDAIIVAVGH-QQFKQ-MGSEDIRGFGKDKHVLYD-LKYVL  416 (425)
T ss_pred             chhhhhcCCCEEEEccCC-HHhhc-CCHHHHHHhcCCCCEEEE-CCCCC
Confidence            222 36789999999863 33332 4444443 4554458888 46654

>PRK05597 molybdopterin biosynthesis protein MoeB; Validated

Probab=94.57  E-value=0.094  Score=51.07  Aligned_cols=96  Identities=26%  Similarity=0.176  Sum_probs=59.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh------------------HHHHHHhhhhhhhhccCCCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|+|+|.+|..+|+.|+ ..|. ++..+|...-.                  +.+...+.    ++. ..+.
T Consensus        24 ~~L~~~~VlivG~GGlGs~~a~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~----l~~-~np~   97 (355)
T PRK05597         24 QSLFDAKVAVIGAGGLGSPALLYLA-GAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPKAESAREA----MLA-LNPD   97 (355)
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEeCCEEcccccccCcccChhHCCChHHHHHHHH----HHH-HCCC
Confidence            5689999999999999999999985 6677 67777765310                  11110000    110 0011


Q ss_pred             cccc------ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCC
Q 019387          222 VTWK------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (342)
Q Consensus       222 ~~~~------~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk  263 (342)
                      ..+.      ...+..++++++|+|+.|.. +.+++.+++....+.-+
T Consensus        98 v~v~~~~~~i~~~~~~~~~~~~DvVvd~~d-~~~~r~~~n~~c~~~~i  144 (355)
T PRK05597         98 VKVTVSVRRLTWSNALDELRDADVILDGSD-NFDTRHLASWAAARLGI  144 (355)
T ss_pred             cEEEEEEeecCHHHHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence            1111      11234678899999999985 57888888876555433

>PLN02602 lactate dehydrogenase

Probab=94.56  E-value=0.17  Score=49.13  Aligned_cols=103  Identities=16%  Similarity=0.184  Sum_probs=58.8

Q ss_pred             CeEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      ++|+|||.|+||..+|-.|+ +++.-++..+|...+.......+-... ..-.+  ...+....+.++ +++||+|+++.
T Consensus        38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~-~~~~~--~~~i~~~~dy~~-~~daDiVVitA  113 (350)
T PLN02602         38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHA-AAFLP--RTKILASTDYAV-TAGSDLCIVTA  113 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhh-hhcCC--CCEEEeCCCHHH-hCCCCEEEECC
Confidence            69999999999999998763 344458999998764321111111000 00000  012221235555 79999999985


Q ss_pred             CCCc---ccc-cccC---------HHHHhcCCCCcEEEEcC
Q 019387          245 VLDK---TTY-HLIN---------KERLATMKKEAILVNCS  272 (342)
Q Consensus       245 pl~~---~t~-~li~---------~~~l~~mk~ga~lINva  272 (342)
                      -...   +|+ .++.         ...+....+.+++|+++
T Consensus       114 G~~~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt  154 (350)
T PLN02602        114 GARQIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS  154 (350)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence            4321   233 2221         12344456788999998

>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.48  E-value=0.17  Score=51.20  Aligned_cols=117  Identities=17%  Similarity=0.212  Sum_probs=70.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..+.+++|.|+|+|.+|+++|+.| ...|.+|.++|+..... .+....       .+.   .+.......+.+.++|+|
T Consensus        11 ~~~~~~~v~v~G~G~sG~a~a~~L-~~~G~~V~~~D~~~~~~-~~~l~~-------~gi---~~~~~~~~~~~~~~~d~v   78 (473)
T PRK00141         11 PQELSGRVLVAGAGVSGRGIAAML-SELGCDVVVADDNETAR-HKLIEV-------TGV---ADISTAEASDQLDSFSLV   78 (473)
T ss_pred             ccccCCeEEEEccCHHHHHHHHHH-HHCCCEEEEECCChHHH-HHHHHh-------cCc---EEEeCCCchhHhcCCCEE
Confidence            357889999999999999999997 68899999999765432 111111       111   111111123345678998


Q ss_pred             EEcCCC---Ccc-------cccccCHHHHhc-------C--CCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          241 SLHPVL---DKT-------TYHLINKERLAT-------M--KKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~~pl---~~~-------t~~li~~~~l~~-------m--k~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      +....-   +|+       ...++++-.+..       +  +...+-|-=+-|..-...-|.+.|+..
T Consensus        79 V~Spgi~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~~~~~~vIaVTGTnGKTTTt~ml~~iL~~~  146 (473)
T PRK00141         79 VTSPGWRPDSPLLVDAQSQGLEVIGDVELAWRLDQAGVFGEPRTWLAVTGTNGKTTTTAMLAAMMQEG  146 (473)
T ss_pred             EeCCCCCCCCHHHHHHHHCCCceeeHHHHHHHhhhhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHhc
Confidence            776322   221       123344433321       1  223455666788888888888888653

>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.42  E-value=0.22  Score=50.05  Aligned_cols=111  Identities=22%  Similarity=0.250  Sum_probs=68.3

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +.|++|.|+|+|.+|.++|+.| ...|.+|.++|....... . .       ...+..   .... . .+-+.++|+|+.
T Consensus         7 ~~~~~i~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~-~-l-------~~~g~~---~~~~-~-~~~~~~~d~vv~   71 (460)
T PRK01390          7 FAGKTVAVFGLGGSGLATARAL-VAGGAEVIAWDDNPASRA-K-A-------AAAGIT---TADL-R-TADWSGFAALVL   71 (460)
T ss_pred             cCCCEEEEEeecHhHHHHHHHH-HHCCCEEEEECCChhhHH-H-H-------HhcCcc---ccCC-C-hhHHcCCCEEEE
Confidence            6789999999999999999997 789999999997644221 1 1       011111   1111 1 123467998876


Q ss_pred             cC--CCC-c----c---c----ccccCHHH-Hhc-C-----CCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          243 HP--VLD-K----T---T----YHLINKER-LAT-M-----KKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       243 ~~--pl~-~----~---t----~~li~~~~-l~~-m-----k~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ..  |.+ +    .   +    ..++++.. +.. +     +...+-|.=+.|..-...-|...|+.
T Consensus        72 sp~i~~~~~~~~~~v~~a~~~gi~i~~~~~~~~~~~~~~~~~~~vI~VTGT~GKTTTt~ll~~iL~~  138 (460)
T PRK01390         72 SPGVPLTHPKPHWVVDLARAAGVEVIGDIELFCRERRAHAPDAPFIAITGTNGKSTTTALIAHILRE  138 (460)
T ss_pred             CCCCCccCCcccHHHHHHHHcCCcEEeHHHHHHHHhhccCCCCCEEEEeCCCcHHHHHHHHHHHHHh
Confidence            43  211 1    1   1    11244322 222 2     33456777789999888888888875

>cd00300 LDH_like L-lactate dehydrogenase-like enzymes

Probab=94.42  E-value=0.22  Score=47.35  Aligned_cols=99  Identities=17%  Similarity=0.195  Sum_probs=57.2

Q ss_pred             EEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          168 VGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       168 vgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      |+|||.|.+|..+|-.|+ ..|  -++..+|...+.. +..............  ........+ .+.+++||+|+++..
T Consensus         1 i~iiGaG~VG~~~a~~l~-~~~~~~el~l~D~~~~~~-~g~~~DL~~~~~~~~--~~~i~~~~~-~~~l~~aDiVIitag   75 (300)
T cd00300           1 ITIIGAGNVGAAVAFALI-AKGLASELVLVDVNEEKA-KGDALDLSHASAFLA--TGTIVRGGD-YADAADADIVVITAG   75 (300)
T ss_pred             CEEECCCHHHHHHHHHHH-hcCCCCEEEEEeCCccHH-HHHHHhHHHhccccC--CCeEEECCC-HHHhCCCCEEEEcCC
Confidence            589999999999998864 445  5899999976532 222111111111100  111111234 357899999999976


Q ss_pred             CCccccc------------ccC--HHHHhcCCCCcEEEEcC
Q 019387          246 LDKTTYH------------LIN--KERLATMKKEAILVNCS  272 (342)
Q Consensus       246 l~~~t~~------------li~--~~~l~~mk~ga~lINva  272 (342)
                      . +...+            ++.  ...+..-.|++.+||++
T Consensus        76 ~-p~~~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s  115 (300)
T cd00300          76 A-PRKPGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS  115 (300)
T ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence            4 22212            111  12344445789999998

Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=94.26  E-value=0.093  Score=44.78  Aligned_cols=45  Identities=22%  Similarity=0.386  Sum_probs=32.2

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhh
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYG  211 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~-d~~~~~~~~~~~~~~~  211 (342)
                      +|||-|||+||+.+++.+...-.++|.+. |+.+......+...|+
T Consensus         2 kVgINGfGRIGR~v~r~~~~~~~~evvaInd~~~~~~~~a~LlkyD   47 (151)
T PF00044_consen    2 KVGINGFGRIGRLVLRAALDQPDIEVVAINDPAPDPEYLAYLLKYD   47 (151)
T ss_dssp             EEEEESTSHHHHHHHHHHHTSTTEEEEEEEESSSSHHHHHHHHHEE
T ss_pred             EEEEECCCcccHHHHHhhcccceEEEEEEecccccchhhhhhhhcc
Confidence            79999999999999998755667888865 5553444444444443

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=94.25  E-value=0.13  Score=51.99  Aligned_cols=116  Identities=20%  Similarity=0.200  Sum_probs=71.0

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +.||+|+|+|+|.-|.++|+.| ...|++|+++|.......+...    . +...+.   ......+ ++.+.++|+|+.
T Consensus         6 ~~~~~v~v~G~G~sG~~~~~~l-~~~g~~v~~~d~~~~~~~~~~~----~-l~~~~~---~~~~~~~-~~~~~~~d~vV~   75 (468)
T PRK04690          6 LEGRRVALWGWGREGRAAYRAL-RAHLPAQALTLFCNAVEAREVG----A-LADAAL---LVETEAS-AQRLAAFDVVVK   75 (468)
T ss_pred             cCCCEEEEEccchhhHHHHHHH-HHcCCEEEEEcCCCcccchHHH----H-HhhcCE---EEeCCCC-hHHccCCCEEEE
Confidence            4689999999999999999997 6899999999965432211100    0 001010   0011112 345678999987


Q ss_pred             cCCCCcc----------cccccCHHHH--hc-CC-----CCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          243 HPVLDKT----------TYHLINKERL--AT-MK-----KEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       243 ~~pl~~~----------t~~li~~~~l--~~-mk-----~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ..-..+.          ...++++-.|  .. ++     ...+-|-=+-|..-...-+.+.|+.
T Consensus        76 SpgI~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~  139 (468)
T PRK04690         76 SPGISPYRPEALAAAARGTPFIGGTALWFAEHAARDGVVPGTVCVTGTKGKSTTTALLAHLLRA  139 (468)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEEHHHHHHHHHhhccCCCCCEEEEeCCCCHHHHHHHHHHHHHh
Confidence            6533222          1234555443  33 32     2456677778988888877777764

>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase

Probab=94.18  E-value=0.15  Score=50.21  Aligned_cols=109  Identities=14%  Similarity=0.184  Sum_probs=64.2

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHH-HHhhcCCEE
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD-EVLREADVI  240 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~ll~~aDiV  240 (342)
                      -..++|+|+|- |.+|+++.+.|...=++++..+...... .+.....+.. +.. +  .  .....+++ +.++++|+|
T Consensus        36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~sa-G~~i~~~~~~-l~~-~--~--~~~~~~~~~~~~~~~DvV  108 (381)
T PLN02968         36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKA-GQSFGSVFPH-LIT-Q--D--LPNLVAVKDADFSDVDAV  108 (381)
T ss_pred             ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhc-CCCchhhCcc-ccC-c--c--ccceecCCHHHhcCCCEE
Confidence            35568999998 9999999999743336788877654321 1110000100 000 0  0  01112222 225889999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~  284 (342)
                      ++++|..      ...+....|+.|..+|+.+-.-..+.++.++
T Consensus       109 f~Alp~~------~s~~i~~~~~~g~~VIDlSs~fRl~~~~~y~  146 (381)
T PLN02968        109 FCCLPHG------TTQEIIKALPKDLKIVDLSADFRLRDIAEYE  146 (381)
T ss_pred             EEcCCHH------HHHHHHHHHhCCCEEEEcCchhccCCcccch
Confidence            9999852      3455555567789999998666666655444

>PRK07806 short chain dehydrogenase; Provisional

Probab=94.16  E-value=0.26  Score=44.53  Aligned_cols=37  Identities=27%  Similarity=0.375  Sum_probs=31.3

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      +.|+++.|.|- |.||+.+++.|+ .-|.+|++.+++..
T Consensus         4 ~~~k~vlItGasggiG~~l~~~l~-~~G~~V~~~~r~~~   41 (248)
T PRK07806          4 LPGKTALVTGSSRGIGADTAKILA-GAGAHVVVNYRQKA   41 (248)
T ss_pred             CCCcEEEEECCCCcHHHHHHHHHH-HCCCEEEEEeCCch
Confidence            56899999996 899999999984 67999998877653

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=94.04  E-value=0.14  Score=50.96  Aligned_cols=71  Identities=14%  Similarity=0.084  Sum_probs=51.3

Q ss_pred             ccccCCCeEEEEec----------CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccC
Q 019387          160 GNLLKGQTVGVIGA----------GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (342)
Q Consensus       160 ~~~L~gktvgIvG~----------G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (342)
                      +.++.|++|+|+|+          ..-+..+++.| ...| ++|.+|||........    +          .... ...
T Consensus       315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L-~~~gg~~v~~~DP~~~~~~~~----~----------~~~~-~~~  378 (415)
T PRK11064        315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELI-AQWHSGETLVVEPNIHQLPKK----L----------DGLV-TLV  378 (415)
T ss_pred             ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHH-HhcCCcEEEEECCCCCchhhh----c----------cCce-eeC
Confidence            45688999999998          55778899997 5775 9999999985421000    0          0001 236


Q ss_pred             CHHHHhhcCCEEEEcCCC
Q 019387          229 SMDEVLREADVISLHPVL  246 (342)
Q Consensus       229 ~l~~ll~~aDiV~l~~pl  246 (342)
                      ++++.+++||.|+++.+-
T Consensus       379 ~~~~~~~~ad~vvi~t~~  396 (415)
T PRK11064        379 SLDEALATADVLVMLVDH  396 (415)
T ss_pred             CHHHHHhCCCEEEECCCC
Confidence            889999999999999873

>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B

Probab=94.03  E-value=0.095  Score=45.14  Aligned_cols=70  Identities=16%  Similarity=0.114  Sum_probs=48.5

Q ss_pred             EEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhcCCEEEEcC
Q 019387          168 VGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       168 vgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      |.|+| .|.+|+.+++.| ..-|.+|+++.|++.+..+   .        .+...  ..+....++.+.+.++|.|+.++
T Consensus         1 I~V~GatG~vG~~l~~~L-~~~~~~V~~~~R~~~~~~~---~--------~~~~~~~~d~~d~~~~~~al~~~d~vi~~~   68 (183)
T PF13460_consen    1 ILVFGATGFVGRALAKQL-LRRGHEVTALVRSPSKAED---S--------PGVEIIQGDLFDPDSVKAALKGADAVIHAA   68 (183)
T ss_dssp             EEEETTTSHHHHHHHHHH-HHTTSEEEEEESSGGGHHH---C--------TTEEEEESCTTCHHHHHHHHTTSSEEEECC
T ss_pred             eEEECCCChHHHHHHHHH-HHCCCEEEEEecCchhccc---c--------cccccceeeehhhhhhhhhhhhcchhhhhh
Confidence            67899 499999999997 5778999999998764322   0        01111  11122346678889999999998


Q ss_pred             CCCcc
Q 019387          245 VLDKT  249 (342)
Q Consensus       245 pl~~~  249 (342)
                      +.+..
T Consensus        69 ~~~~~   73 (183)
T PF13460_consen   69 GPPPK   73 (183)
T ss_dssp             HSTTT
T ss_pred             hhhcc
Confidence            75443

...

>KOG2711 consensus Glycerol-3-phosphate dehydrogenase/dihydroxyacetone 3-phosphate reductase [Energy production and conversion]

Probab=94.03  E-value=0.25  Score=47.34  Aligned_cols=109  Identities=17%  Similarity=0.181  Sum_probs=66.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHh------cCCcEEEE--EcCCchhHHHHHHhhhhhh-----hhccCCCCccccccCCH
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVE------GFKMNLIY--YDLYQATRLEKFVTAYGQF-----LKANGEQPVTWKRASSM  230 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~------afg~~V~~--~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l  230 (342)
                      .-++|+|||.|+=|..+|+.++.      .|..+|..  |+-......+...+...+.     +.....-|..+...+++
T Consensus        20 ~~~kV~ivGsGnWGsaiaki~~~n~~~~~~f~~~Vrmwv~ee~i~~~~~~L~eiIN~~heN~KYlpg~~lP~NvvAv~dl   99 (372)
T KOG2711|consen   20 DPLKVCIVGSGNWGSAIAKIVGENVKEFPIFDPQVRMWVFEEEINGEAEKLTEIINSRHENVKYLPGIKLPENVVAVPDL   99 (372)
T ss_pred             CceEEEEEccChHHHHHHHHHhhhhhhccccCceeeEEEeccccCChhHHHHHHhccccccccccCCccCCCCeEecchH
Confidence            35789999999999999997642      34444544  4332222112222211110     00111112233345789


Q ss_pred             HHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       231 ~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      .+++.+||+++..+|-  +-..-|-++...+.|+++..|....|
T Consensus       100 ~ea~~dADilvf~vPh--Qf~~~ic~~l~g~vk~~~~aISL~KG  141 (372)
T KOG2711|consen  100 VEAAKDADILVFVVPH--QFIPRICEQLKGYVKPGATAISLIKG  141 (372)
T ss_pred             HHHhccCCEEEEeCCh--hhHHHHHHHHhcccCCCCeEEEeecc
Confidence            9999999999999993  22233445677788999999998776

>PRK07411 hypothetical protein; Validated

Probab=94.00  E-value=0.14  Score=50.42  Aligned_cols=102  Identities=20%  Similarity=0.191  Sum_probs=61.5

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--H-------HHHH-----hhhhhhhhc-cCCCCcc-
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--L-------EKFV-----TAYGQFLKA-NGEQPVT-  223 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~--~-------~~~~-----~~~~~~~~~-~~~~~~~-  223 (342)
                      ..|..++|.|||+|.+|..+|+.|+ ..|. ++..+|...-..  +       +...     +.....++. ....... 
T Consensus        34 ~~L~~~~VlivG~GGlG~~va~~La-~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka~~a~~~l~~~np~v~v~~  112 (390)
T PRK07411         34 KRLKAASVLCIGTGGLGSPLLLYLA-AAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKIESAKNRILEINPYCQVDL  112 (390)
T ss_pred             HHHhcCcEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCEecccccCcCcccChHHCCCcHHHHHHHHHHHHCCCCeEEE
Confidence            5689999999999999999999985 6676 677777543110  0       0000     000000000 0000000 


Q ss_pred             cc---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCC
Q 019387          224 WK---RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK  264 (342)
Q Consensus       224 ~~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~  264 (342)
                      +.   ...+..+++.++|+|+.|+. +.+++.++|+...+.-+|
T Consensus       113 ~~~~~~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~p  155 (390)
T PRK07411        113 YETRLSSENALDILAPYDVVVDGTD-NFPTRYLVNDACVLLNKP  155 (390)
T ss_pred             EecccCHHhHHHHHhCCCEEEECCC-CHHHHHHHHHHHHHcCCC
Confidence            00   11234578899999999885 678899998877666555

>cd08230 glucose_DH Glucose dehydrogenase

Probab=93.96  E-value=0.22  Score=47.93  Aligned_cols=95  Identities=16%  Similarity=0.200  Sum_probs=59.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc--hhHHHHHHhhhhhhhhccCCCCccccccCCHH--HHhhcCCE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EVLREADV  239 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ll~~aDi  239 (342)
                      .|++|.|+|.|.||...++. ++..|++|++.++..  +.+.+ +...++       ...... ...++.  ......|+
T Consensus       172 ~g~~vlI~G~G~vG~~a~q~-ak~~G~~vi~~~~~~~~~~~~~-~~~~~G-------a~~v~~-~~~~~~~~~~~~~~d~  241 (355)
T cd08230         172 NPRRALVLGAGPIGLLAALL-LRLRGFEVYVLNRRDPPDPKAD-IVEELG-------ATYVNS-SKTPVAEVKLVGEFDL  241 (355)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCeEEEEecCCCCHHHHH-HHHHcC-------CEEecC-CccchhhhhhcCCCCE
Confidence            58899999999999999998 489999999998742  12222 111111       111100 011111  12245899


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+-++... .    .-...++.+++|..++.++.
T Consensus       242 vid~~g~~-~----~~~~~~~~l~~~G~~v~~G~  270 (355)
T cd08230         242 IIEATGVP-P----LAFEALPALAPNGVVILFGV  270 (355)
T ss_pred             EEECcCCH-H----HHHHHHHHccCCcEEEEEec
Confidence            99988631 1    22456888999999888764

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating)

Probab=93.90  E-value=0.32  Score=45.93  Aligned_cols=90  Identities=13%  Similarity=0.207  Sum_probs=52.4

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l~  243 (342)
                      +|||||.|+||+..+..+.+.-++++.+ +|+.++.....+-..       .+..    ....+.++++.  +-|+|+++
T Consensus         3 rVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~-------~Gi~----~~~~~~e~ll~~~dIDaV~ia   71 (285)
T TIGR03215         3 KVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARE-------LGVK----TSAEGVDGLLANPDIDIVFDA   71 (285)
T ss_pred             EEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHH-------CCCC----EEECCHHHHhcCCCCCEEEEC
Confidence            7999999999998876653434677664 677665321111111       1111    12357888885  57889999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .|...  +.   +-....++.|..+++-.
T Consensus        72 Tp~~~--H~---e~a~~al~aGk~VIdek   95 (285)
T TIGR03215        72 TSAKA--HA---RHARLLAELGKIVIDLT   95 (285)
T ss_pred             CCcHH--HH---HHHHHHHHcCCEEEECC
Confidence            98432  21   12233345666665543

Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=93.90  E-value=0.25  Score=49.02  Aligned_cols=46  Identities=20%  Similarity=0.416  Sum_probs=32.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYG  211 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~  211 (342)
                      .+|||.|||+||+.++|.+...++++|++ +|+......-.+.-.|+
T Consensus        86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~~~~ayllkyD  132 (421)
T PLN02272         86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDAKYMAYMFKYD  132 (421)
T ss_pred             eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCHHHHHHHhhhc
Confidence            48999999999999999852248999887 66655444444444443

>PRK06349 homoserine dehydrogenase; Provisional

Probab=93.89  E-value=0.28  Score=48.97  Aligned_cols=108  Identities=12%  Similarity=0.117  Sum_probs=59.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhc---------CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEG---------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~a---------fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~  235 (342)
                      -+|||+|+|.||+.+++.|.+.         .+.++. ++|++.... ..             ..........++++++.
T Consensus         4 i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~-~~-------------~~~~~~~~~~d~~~ll~   69 (426)
T PRK06349          4 LKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKD-RG-------------VDLPGILLTTDPEELVN   69 (426)
T ss_pred             EEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhc-cC-------------CCCcccceeCCHHHHhh
Confidence            3799999999999998876321         245655 457664321 00             00011223468899985


Q ss_pred             --cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC-HHHHHHHHHcCCc
Q 019387          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID-EVALVEHLKQNPM  291 (342)
Q Consensus       236 --~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd-~~aL~~aL~~g~i  291 (342)
                        +-|+|+.|++.... .   -.-..+.++.|.-+|-..-+.+.. -+.|.++.++...
T Consensus        70 d~~iDvVve~tg~~~~-~---~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv  124 (426)
T PRK06349         70 DPDIDIVVELMGGIEP-A---RELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGV  124 (426)
T ss_pred             CCCCCEEEECCCCchH-H---HHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCC
Confidence              46999998864321 1   112225566666555433322222 2556666555443

>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated

Probab=93.89  E-value=0.22  Score=48.23  Aligned_cols=100  Identities=18%  Similarity=0.274  Sum_probs=55.9

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhcC-CcEEEE-EcCCchh-HHHHHHhhhhhhhhccCCCCccccccCCHHH-HhhcCCEE
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEGF-KMNLIY-YDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVI  240 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~af-g~~V~~-~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~aDiV  240 (342)
                      .+|+|+|. |.+|+.+++.|. .. ++++.+ .++.... ....   .+.. .  .......   ..++++ ...++|+|
T Consensus         3 ~kVaIiGAtG~vG~~l~~~L~-~~p~~elv~v~~~~~~g~~l~~---~~~~-~--~~~~~~~---~~~~~~~~~~~vD~V   72 (343)
T PRK00436          3 IKVGIVGASGYTGGELLRLLL-NHPEVEIVAVTSRSSAGKPLSD---VHPH-L--RGLVDLV---LEPLDPEILAGADVV   72 (343)
T ss_pred             eEEEEECCCCHHHHHHHHHHH-cCCCceEEEEECccccCcchHH---hCcc-c--ccccCce---eecCCHHHhcCCCEE
Confidence            58999997 999999999974 54 678765 5532211 1111   0000 0  0000111   122222 45789999


Q ss_pred             EEcCCCCcccccccCHHHHh-cCCCCcEEEEcCCCcccCHHH
Q 019387          241 SLHPVLDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVA  281 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~-~mk~ga~lINvaRG~~vd~~a  281 (342)
                      ++|+|....      .+... ..+.|..+||.+-.--.+..+
T Consensus        73 f~alP~~~~------~~~v~~a~~aG~~VID~S~~fR~~~~~  108 (343)
T PRK00436         73 FLALPHGVS------MDLAPQLLEAGVKVIDLSADFRLKDPE  108 (343)
T ss_pred             EECCCcHHH------HHHHHHHHhCCCEEEECCcccCCCCch
Confidence            999995322      22222 235799999998554454433

>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like

Probab=93.86  E-value=0.2  Score=44.65  Aligned_cols=37  Identities=30%  Similarity=0.413  Sum_probs=30.9

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~  198 (342)
                      ..|.+++|.|+|+|.+|.++|+.|+ ..|. ++..+|..
T Consensus        15 ~~L~~s~VlviG~gglGsevak~L~-~~GVg~i~lvD~d   52 (198)
T cd01485          15 NKLRSAKVLIIGAGALGAEIAKNLV-LAGIDSITIVDHR   52 (198)
T ss_pred             HHHhhCcEEEECCCHHHHHHHHHHH-HcCCCEEEEEECC
Confidence            5688999999999999999999985 5577 47777754

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=93.85  E-value=0.18  Score=50.23  Aligned_cols=99  Identities=13%  Similarity=0.150  Sum_probs=58.8

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc--ccCCHH-HHhhcCCE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMD-EVLREADV  239 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~-~ll~~aDi  239 (342)
                      +..+++.|+|+|.+|+.+++.| ...|.+|+++|..++.. +.....+      .+..-....  ....|+ .-+.++|.
T Consensus       229 ~~~~~iiIiG~G~~g~~l~~~L-~~~~~~v~vid~~~~~~-~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~  300 (453)
T PRK09496        229 KPVKRVMIVGGGNIGYYLAKLL-EKEGYSVKLIERDPERA-EELAEEL------PNTLVLHGDGTDQELLEEEGIDEADA  300 (453)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence            4568899999999999999998 68899999999887532 2211110      000000000  111222 23468999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINv  271 (342)
                      |+++.+...  .+++-....+.+.+..+++-+
T Consensus       301 vi~~~~~~~--~n~~~~~~~~~~~~~~ii~~~  330 (453)
T PRK09496        301 FIALTNDDE--ANILSSLLAKRLGAKKVIALV  330 (453)
T ss_pred             EEECCCCcH--HHHHHHHHHHHhCCCeEEEEE
Confidence            998887543  334434444555555555543

>PRK04148 hypothetical protein; Provisional

Probab=93.84  E-value=0.19  Score=41.95  Aligned_cols=36  Identities=17%  Similarity=0.278  Sum_probs=31.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .++++.+||+| -|..+|..| ...|.+|++.|.++..
T Consensus        16 ~~~kileIG~G-fG~~vA~~L-~~~G~~ViaIDi~~~a   51 (134)
T PRK04148         16 KNKKIVELGIG-FYFKVAKKL-KESGFDVIVIDINEKA   51 (134)
T ss_pred             cCCEEEEEEec-CCHHHHHHH-HHCCCEEEEEECCHHH
Confidence            46789999999 899999998 5789999999998864

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=93.80  E-value=0.14  Score=52.92  Aligned_cols=91  Identities=14%  Similarity=0.171  Sum_probs=56.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC---HHH-HhhcCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDE-VLREADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~-ll~~aDiV~  241 (342)
                      ..+-|+|+|++|+.+|+.| +..|.+|++.|.+++.. +...+        .+...... ...+   +++ -++++|.++
T Consensus       418 ~hiiI~G~G~~G~~la~~L-~~~g~~vvvId~d~~~~-~~~~~--------~g~~~i~G-D~~~~~~L~~a~i~~a~~vi  486 (558)
T PRK10669        418 NHALLVGYGRVGSLLGEKL-LAAGIPLVVIETSRTRV-DELRE--------RGIRAVLG-NAANEEIMQLAHLDCARWLL  486 (558)
T ss_pred             CCEEEECCChHHHHHHHHH-HHCCCCEEEEECCHHHH-HHHHH--------CCCeEEEc-CCCCHHHHHhcCccccCEEE
Confidence            5689999999999999998 68899999999887542 22111        11111111 1122   222 146899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEE
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILV  269 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lI  269 (342)
                      ++.+.++++..++-.-  ..+.+...+|
T Consensus       487 v~~~~~~~~~~iv~~~--~~~~~~~~ii  512 (558)
T PRK10669        487 LTIPNGYEAGEIVASA--REKRPDIEII  512 (558)
T ss_pred             EEcCChHHHHHHHHHH--HHHCCCCeEE
Confidence            9988766665554432  3334455554

>PRK05086 malate dehydrogenase; Provisional

Probab=93.80  E-value=0.26  Score=47.08  Aligned_cols=101  Identities=24%  Similarity=0.211  Sum_probs=58.4

Q ss_pred             CeEEEEec-CHHHHHHHHHHHh--cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc--cCCHHHHhhcCCEE
Q 019387          166 QTVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~--afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~ll~~aDiV  240 (342)
                      ++|+|||. |.||+.+|..++.  .++.++..+|+.+...  ..  .  ..+.... .......  ..++.+.++++|+|
T Consensus         1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~--g~--a--lDl~~~~-~~~~i~~~~~~d~~~~l~~~DiV   73 (312)
T PRK05086          1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTP--GV--A--VDLSHIP-TAVKIKGFSGEDPTPALEGADVV   73 (312)
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCc--ce--e--hhhhcCC-CCceEEEeCCCCHHHHcCCCCEE
Confidence            47999999 9999999987633  3455788999764321  00  0  0011101 0011111  34666778999999


Q ss_pred             EEcCCCCcccccc-----------cCHHHHhc---CCCCcEEEEcCCC
Q 019387          241 SLHPVLDKTTYHL-----------INKERLAT---MKKEAILVNCSRG  274 (342)
Q Consensus       241 ~l~~pl~~~t~~l-----------i~~~~l~~---mk~ga~lINvaRG  274 (342)
                      ++|.-. +...+.           +-.+..+.   -.+.+++++++-.
T Consensus        74 IitaG~-~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP  120 (312)
T PRK05086         74 LISAGV-ARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNP  120 (312)
T ss_pred             EEcCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            998754 222221           12233333   3567899998653

>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated

Probab=93.75  E-value=2.7  Score=41.55  Aligned_cols=107  Identities=20%  Similarity=0.305  Sum_probs=65.1

Q ss_pred             ccCCCeEEEEec-----C---HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH
Q 019387          162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (342)
Q Consensus       162 ~L~gktvgIvG~-----G---~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  233 (342)
                      .+.|++|+|+|-     |   ++.++++..+ ..||++|.+..|..-...+...+.........+   ..+....++++.
T Consensus       184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~-~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G---~~i~~~~d~~ea  259 (395)
T PRK07200        184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASG---GSFRQVNSMEEA  259 (395)
T ss_pred             ccCCCEEEEEeccccccCCcchHHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHH
Confidence            478999999985     5   6678888886 579999999887632111111110000011111   123345799999


Q ss_pred             hhcCCEEEEcCCC-----C---------c-----------------ccccccCHHHHhcCCCC-cEEEEcC
Q 019387          234 LREADVISLHPVL-----D---------K-----------------TTYHLINKERLATMKKE-AILVNCS  272 (342)
Q Consensus       234 l~~aDiV~l~~pl-----~---------~-----------------~t~~li~~~~l~~mk~g-a~lINva  272 (342)
                      ++++|+|..-.-.     .         +                 -...-++.+.++.++++ ++|.-+.
T Consensus       260 v~~aDvVYtd~W~sm~~~~er~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~v~~elm~~a~~~~ai~MHcL  330 (395)
T PRK07200        260 FKDADIVYPKSWAPYKVMEERTELYRAGDHEGIKALEKELLAQNAQHKDWHCTEEMMKLTKDGKALYMHCL  330 (395)
T ss_pred             hCCCCEEEEcCeeecccccccccccccccchhhhhhhhhhhHHHHHccCCCcCHHHHhccCCCCcEEECCC
Confidence            9999999765311     0         0                 12234577788888875 7777664

>PRK12550 shikimate 5-dehydrogenase; Reviewed

Probab=93.73  E-value=0.31  Score=45.68  Aligned_cols=105  Identities=13%  Similarity=0.175  Sum_probs=62.7

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      ++++.|+|.|..|++++..| ...|+ +|.+++|..++ .+...+.+       +   ..+  ...+.  ...+|+|+.|
T Consensus       122 ~~~vlilGaGGaarAi~~aL-~~~g~~~i~i~nR~~~~-a~~la~~~-------~---~~~--~~~~~--~~~~dlvINa  185 (272)
T PRK12550        122 DLVVALRGSGGMAKAVAAAL-RDAGFTDGTIVARNEKT-GKALAELY-------G---YEW--RPDLG--GIEADILVNV  185 (272)
T ss_pred             CCeEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHH-HHHHHHHh-------C---Ccc--hhhcc--cccCCEEEEC
Confidence            56899999999999999987 56787 59999998753 23222111       0   000  00111  2458999999


Q ss_pred             CCCCccc-----ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          244 PVLDKTT-----YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       244 ~pl~~~t-----~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      .|..-..     .-.++.   +.++++.+++++.-.+ .++.=|.+|-+.|
T Consensus       186 Tp~Gm~~~~~~~~~pi~~---~~l~~~~~v~D~vY~P-~~T~ll~~A~~~G  232 (272)
T PRK12550        186 TPIGMAGGPEADKLAFPE---AEIDAASVVFDVVALP-AETPLIRYARARG  232 (272)
T ss_pred             CccccCCCCccccCCCCH---HHcCCCCEEEEeecCC-ccCHHHHHHHHCc
Confidence            9953211     112333   3466777888876655 2344344444444

>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function

Probab=93.73  E-value=0.3  Score=41.42  Aligned_cols=84  Identities=19%  Similarity=0.239  Sum_probs=51.6

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ..|++|++||+=   +++++.| +.-+.++.++|+++......               .... ....-++++++||+|++
T Consensus         9 ~~~~~V~~VG~f---~P~~~~l-~~~~~~v~v~d~~~~~~~~~---------------~~~~-~~~~~~~~l~~aD~vii   68 (147)
T PF04016_consen    9 GPGDKVGMVGYF---QPLVEKL-KERGAEVRVFDLNPDNIGEE---------------PGDV-PDEDAEEILPWADVVII   68 (147)
T ss_dssp             TTTSEEEEES-----HCCHHHH-CCCCSEEEEEESSGGG--SS---------------CT-E-EGGGHHHHGGG-SEEEE
T ss_pred             cCCCEEEEEcCc---HHHHHHH-hcCCCCEEEEECCCCCCCCC---------------CCcC-CHHHHHHHHccCCEEEE
Confidence            468999999961   2467776 56789999999998542110               0001 22466889999999976


Q ss_pred             cCCCCcccccccC---HHHHhcCCCCcEEEEcC
Q 019387          243 HPVLDKTTYHLIN---KERLATMKKEAILVNCS  272 (342)
Q Consensus       243 ~~pl~~~t~~li~---~~~l~~mk~ga~lINva  272 (342)
                      .-.      -++|   .+.|+..++++.++=+|
T Consensus        69 TGs------TlvN~Ti~~iL~~~~~~~~vil~G   95 (147)
T PF04016_consen   69 TGS------TLVNGTIDDILELARNAREVILYG   95 (147)
T ss_dssp             ECH------HCCTTTHHHHHHHTTTSSEEEEES
T ss_pred             Eee------eeecCCHHHHHHhCccCCeEEEEe
Confidence            532      2343   34666666666665554

; PDB: 3L5O_B 3NPG_A.

>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.61  E-value=0.19  Score=50.63  Aligned_cols=111  Identities=23%  Similarity=0.297  Sum_probs=67.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .||+|+|+|+|.-|.++|+.| +. |++|+++|....... .. ...    .  .. .  +....+ .+.+.++|+|+..
T Consensus         5 ~~~~v~v~G~G~sG~a~~~~L-~~-g~~v~v~D~~~~~~~-~~-~~~----~--~~-~--~~~~~~-~~~~~~~d~vV~S   70 (454)
T PRK01368          5 TKQKIGVFGLGKTGISVYEEL-QN-KYDVIVYDDLKANRD-IF-EEL----Y--SK-N--AIAALS-DSRWQNLDKIVLS   70 (454)
T ss_pred             CCCEEEEEeecHHHHHHHHHH-hC-CCEEEEECCCCCchH-HH-Hhh----h--cC-c--eeccCC-hhHhhCCCEEEEC
Confidence            488999999999999999998 45 999999995533211 10 000    0  00 0  001112 3456789999877


Q ss_pred             CCCCcc----------cccccCHHHH--hcCCC-CcEEEEcCCCcccCHHHHHHHHHc
Q 019387          244 PVLDKT----------TYHLINKERL--ATMKK-EAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       244 ~pl~~~----------t~~li~~~~l--~~mk~-ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      .--.+.          ...++++-.|  ..+++ ..+=|-=+-|..-...-|.+.|+.
T Consensus        71 PgI~~~~p~~~~a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~  128 (454)
T PRK01368         71 PGIPLTHEIVKIAKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS  128 (454)
T ss_pred             CCCCCCCHHHHHHHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            533322          1234554433  33332 355566678998888878888875

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=93.58  E-value=0.23  Score=47.00  Aligned_cols=88  Identities=14%  Similarity=0.086  Sum_probs=55.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .|+++.|+|.|.||...++. ++.+|++ |.+.|...+. .+... .+       ..    +   ..-++.-...|+|+-
T Consensus       144 ~~~~vlV~G~G~vG~~a~q~-ak~~G~~~v~~~~~~~~r-l~~a~-~~-------~~----i---~~~~~~~~g~Dvvid  206 (308)
T TIGR01202       144 KVLPDLIVGHGTLGRLLARL-TKAAGGSPPAVWETNPRR-RDGAT-GY-------EV----L---DPEKDPRRDYRAIYD  206 (308)
T ss_pred             CCCcEEEECCCHHHHHHHHH-HHHcCCceEEEeCCCHHH-HHhhh-hc-------cc----c---ChhhccCCCCCEEEE
Confidence            47789999999999999998 5899998 4556665432 22110 00       00    0   000111235799998


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |.... .   . -...++.++++..++.+|-
T Consensus       207 ~~G~~-~---~-~~~~~~~l~~~G~iv~~G~  232 (308)
T TIGR01202       207 ASGDP-S---L-IDTLVRRLAKGGEIVLAGF  232 (308)
T ss_pred             CCCCH-H---H-HHHHHHhhhcCcEEEEEee
Confidence            87631 1   1 1456788999999998763

>PLN02948 phosphoribosylaminoimidazole carboxylase

Probab=93.57  E-value=0.17  Score=52.53  Aligned_cols=38  Identities=18%  Similarity=0.382  Sum_probs=34.1

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      ....|+|||||-|..|+.+++. ++.+|.+|+++|+.+.
T Consensus        19 ~~~~k~IgIIGgGqlg~mla~a-A~~lG~~Vi~ld~~~~   56 (577)
T PLN02948         19 GVSETVVGVLGGGQLGRMLCQA-ASQMGIKVKVLDPLED   56 (577)
T ss_pred             CCCCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCCC
Confidence            4778999999999999999998 4789999999998764

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=93.51  E-value=0.16  Score=52.90  Aligned_cols=96  Identities=16%  Similarity=0.214  Sum_probs=59.4

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC---HHHH-hhcCCEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~l-l~~aDiV  240 (342)
                      ...+.|+|+|++|+.+++.| +..|.++++.|.+++. .+...        +.+.... +-..++   |+++ +.+||.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~-v~~~~--------~~g~~v~-~GDat~~~~L~~agi~~A~~v  468 (601)
T PRK03659        400 KPQVIIVGFGRFGQVIGRLL-MANKMRITVLERDISA-VNLMR--------KYGYKVY-YGDATQLELLRAAGAEKAEAI  468 (601)
T ss_pred             cCCEEEecCchHHHHHHHHH-HhCCCCEEEEECCHHH-HHHHH--------hCCCeEE-EeeCCCHHHHHhcCCccCCEE
Confidence            35799999999999999997 6889999999988754 22211        1121111 111122   2222 5689999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      +++.+..+.+..++  ...+++.|...+|--+|
T Consensus       469 v~~~~d~~~n~~i~--~~~r~~~p~~~IiaRa~  499 (601)
T PRK03659        469 VITCNEPEDTMKIV--ELCQQHFPHLHILARAR  499 (601)
T ss_pred             EEEeCCHHHHHHHH--HHHHHHCCCCeEEEEeC
Confidence            99998755554443  23444555655554434

>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]

Probab=93.50  E-value=0.33  Score=46.27  Aligned_cols=70  Identities=23%  Similarity=0.375  Sum_probs=46.3

Q ss_pred             CeEEEEecCHHHHH-HHHHHHhcCC--cEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCE
Q 019387          166 QTVGVIGAGRIGSA-YARMMVEGFK--MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (342)
Q Consensus       166 ktvgIvG~G~IG~~-vA~~l~~afg--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDi  239 (342)
                      .+|||||+|.+++. .+..+ +..+  +.+. ++|++++. .+.+.+.|       +..    ..+.+++++++.  -|+
T Consensus         4 irvgiiG~G~~~~~~~~~~~-~~~~~~~~~vav~d~~~~~-a~~~a~~~-------~~~----~~~~~~~~ll~~~~iD~   70 (342)
T COG0673           4 IRVGIIGAGGIAGKAHLPAL-AALGGGLELVAVVDRDPER-AEAFAEEF-------GIA----KAYTDLEELLADPDIDA   70 (342)
T ss_pred             eEEEEEcccHHHHHHhHHHH-HhCCCceEEEEEecCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence            48999999988754 66665 4554  4544 57888754 33333333       111    245799999986  489


Q ss_pred             EEEcCCCCc
Q 019387          240 ISLHPVLDK  248 (342)
Q Consensus       240 V~l~~pl~~  248 (342)
                      |++|.|..-
T Consensus        71 V~Iatp~~~   79 (342)
T COG0673          71 VYIATPNAL   79 (342)
T ss_pred             EEEcCCChh
Confidence            999999543

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=93.50  E-value=0.23  Score=47.22  Aligned_cols=96  Identities=22%  Similarity=0.188  Sum_probs=59.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccC--CHHHHhh--cC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRAS--SMDEVLR--EA  237 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~l~~ll~--~a  237 (342)
                      .|++|.|+|.|.+|..+++. ++.+|++ |++.++..+.. +. ...+       +.... ......  .+.++..  ..
T Consensus       163 ~g~~vlV~G~G~vG~~~~~~-ak~~G~~~vi~~~~~~~~~-~~-~~~~-------ga~~~i~~~~~~~~~~~~~~~~~~~  232 (339)
T cd08239         163 GRDTVLVVGAGPVGLGALML-ARALGAEDVIGVDPSPERL-EL-AKAL-------GADFVINSGQDDVQEIRELTSGAGA  232 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHH-HH-HHHh-------CCCEEEcCCcchHHHHHHHhCCCCC
Confidence            38899999999999999998 4899999 99888776542 11 1111       11000 000011  1223332  47


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      |+|+-|.... .    .....++.++++..++.++..
T Consensus       233 d~vid~~g~~-~----~~~~~~~~l~~~G~~v~~g~~  264 (339)
T cd08239         233 DVAIECSGNT-A----ARRLALEAVRPWGRLVLVGEG  264 (339)
T ss_pred             CEEEECCCCH-H----HHHHHHHHhhcCCEEEEEcCC
Confidence            8998876531 1    123457788888888887653

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK07877 hypothetical protein; Provisional

Probab=93.45  E-value=0.3  Score=51.91  Aligned_cols=98  Identities=18%  Similarity=0.198  Sum_probs=59.3

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchh-----HH--------HHHHhhhhhhhhc-cCCCCccc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQAT-----RL--------EKFVTAYGQFLKA-NGEQPVTW  224 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~-----~~--------~~~~~~~~~~~~~-~~~~~~~~  224 (342)
                      ..|.+++|+|+|+| +|..+|..|+ ..|.  ++..+|...-+     +.        ....+.....+.. ........
T Consensus       103 ~~L~~~~V~IvG~G-lGs~~a~~La-raGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~  180 (722)
T PRK07877        103 ERLGRLRIGVVGLS-VGHAIAHTLA-AEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEV  180 (722)
T ss_pred             HHHhcCCEEEEEec-HHHHHHHHHH-HccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEE
Confidence            56899999999999 9999999986 4553  66666643210     00        0000000000000 00111100


Q ss_pred             -c---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          225 -K---RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       225 -~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                       .   ...++++++.++|+|+-|+. +-+++.++|+...+.
T Consensus       181 ~~~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~  220 (722)
T PRK07877        181 FTDGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARAR  220 (722)
T ss_pred             EeccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHc
Confidence             0   12468889999999999996 678999999876665

>cd08293 PTGR2 Prostaglandin reductase

Probab=93.44  E-value=0.43  Score=45.42  Aligned_cols=94  Identities=16%  Similarity=0.149  Sum_probs=58.7

Q ss_pred             CCeEEEEec-CHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-----hcC
Q 019387          165 GQTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (342)
Q Consensus       165 gktvgIvG~-G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-----~~a  237 (342)
                      |++|.|.|. |.+|+.+++. ++.+|+ +|++.+.+.+.. +.....+       +....-.....++.+.+     ...
T Consensus       155 ~~~VlI~ga~g~vG~~aiql-Ak~~G~~~Vi~~~~s~~~~-~~~~~~l-------Ga~~vi~~~~~~~~~~i~~~~~~gv  225 (345)
T cd08293         155 NQTMVVSGAAGACGSLAGQI-GRLLGCSRVVGICGSDEKC-QLLKSEL-------GFDAAINYKTDNVAERLRELCPEGV  225 (345)
T ss_pred             CCEEEEECCCcHHHHHHHHH-HHHcCCCEEEEEcCCHHHH-HHHHHhc-------CCcEEEECCCCCHHHHHHHHCCCCc
Confidence            489999998 9999999998 589999 899887765432 1111101       11111000112333322     247


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+|+-++.. +    .+ ...++.++++..+|.++.
T Consensus       226 d~vid~~g~-~----~~-~~~~~~l~~~G~iv~~G~  255 (345)
T cd08293         226 DVYFDNVGG-E----IS-DTVISQMNENSHIILCGQ  255 (345)
T ss_pred             eEEEECCCc-H----HH-HHHHHHhccCCEEEEEee
Confidence            888887752 1    12 567888999999998863

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=93.43  E-value=0.35  Score=46.90  Aligned_cols=94  Identities=15%  Similarity=0.117  Sum_probs=57.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc-cCCH-H---HHhh-c
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSM-D---EVLR-E  236 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l-~---~ll~-~  236 (342)
                      .|++|.|.|.|.+|+.+++. ++..|+ +|++.+..+++...  ...+       +... .+.. ..++ +   ++.. .
T Consensus       191 ~g~~VlV~G~G~vG~~a~~l-ak~~G~~~Vi~~~~~~~r~~~--a~~~-------Ga~~-~i~~~~~~~~~~i~~~~~~g  259 (371)
T cd08281         191 PGQSVAVVGLGGVGLSALLG-AVAAGASQVVAVDLNEDKLAL--AREL-------GATA-TVNAGDPNAVEQVRELTGGG  259 (371)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCcEEEEcCCHHHHHH--HHHc-------CCce-EeCCCchhHHHHHHHHhCCC
Confidence            47899999999999999998 589999 68888877654311  1111       1110 0100 0122 2   2211 4


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+|+-|.... +    .-...++.++++..++.++-
T Consensus       260 ~d~vid~~G~~-~----~~~~~~~~l~~~G~iv~~G~  291 (371)
T cd08281         260 VDYAFEMAGSV-P----ALETAYEITRRGGTTVTAGL  291 (371)
T ss_pred             CCEEEECCCCh-H----HHHHHHHHHhcCCEEEEEcc
Confidence            79998887521 1    12345777888988888763

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.43  E-value=0.35  Score=48.35  Aligned_cols=117  Identities=14%  Similarity=0.163  Sum_probs=69.8

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +.++++.|+|.|.+|.++|+.| ...|.+|.++|..+........+..     ..+   ..+.....-+..+.++|+|+.
T Consensus         3 ~~~~~~~v~G~g~~G~~~a~~l-~~~g~~v~~~d~~~~~~~~~~l~~~-----~~g---i~~~~g~~~~~~~~~~d~vv~   73 (445)
T PRK04308          3 FQNKKILVAGLGGTGISMIAYL-RKNGAEVAAYDAELKPERVAQIGKM-----FDG---LVFYTGRLKDALDNGFDILAL   73 (445)
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCchhHHHHhhc-----cCC---cEEEeCCCCHHHHhCCCEEEE
Confidence            5689999999999999999997 6889999999976543211101000     001   111111112344568999987


Q ss_pred             cCCCCccc----------ccccCHH-HHhc-CC---CCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          243 HPVLDKTT----------YHLINKE-RLAT-MK---KEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       243 ~~pl~~~t----------~~li~~~-~l~~-mk---~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ..-..+.+          ..++++. .+.. ++   ...+-|-=+-|..-...=+...|+.
T Consensus        74 spgi~~~~p~~~~a~~~~i~v~~~~~~~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~  134 (445)
T PRK04308         74 SPGISERQPDIEAFKQNGGRVLGDIELLADIVNRRGDKVIAITGSNGKTTVTSLVGYLCIK  134 (445)
T ss_pred             CCCCCCCCHHHHHHHHcCCcEEEhHHHHHHhhhcCCCCEEEEECCCcHHHHHHHHHHHHHH
Confidence            65443322          1233332 3223 32   2456666678988888877788865

>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity

Probab=93.36  E-value=0.72  Score=43.98  Aligned_cols=124  Identities=19%  Similarity=0.343  Sum_probs=63.8

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhcCC--cEEEEEcCCch-hHHHHH-HhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQA-TRLEKF-VTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~afg--~~V~~~d~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+|+|+|. |.+|..+|..|+ ..|  .+|+.+|+... ...... .+.+.... ..+. ........+.+ .+.+||+|
T Consensus         1 ~kI~IiGatG~vG~~~a~~l~-~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~-~~~~-~~~i~~~~d~~-~l~~aDiV   76 (309)
T cd05294           1 MKVSIIGASGRVGSATALLLA-KEDVVKEINLISRPKSLEKLKGLRLDIYDALA-AAGI-DAEIKISSDLS-DVAGSDIV   76 (309)
T ss_pred             CEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEECcccccccccccchhhhchh-ccCC-CcEEEECCCHH-HhCCCCEE
Confidence            47999998 999999999875 334  36999998431 111110 00000000 0010 01122223445 48999999


Q ss_pred             EEcCCCCcc---cc-cc-------cC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH----HHcCCceEEE
Q 019387          241 SLHPVLDKT---TY-HL-------IN--KERLATMKKEAILVNCSRGPVIDEVALVEH----LKQNPMFRVG  295 (342)
Q Consensus       241 ~l~~pl~~~---t~-~l-------i~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~a----L~~g~i~~aa  295 (342)
                      +++......   ++ .+       +.  ...+....+.+++|+++  +.+|.-..+-.    +...++.|.+
T Consensus        77 iitag~p~~~~~~r~dl~~~n~~i~~~~~~~i~~~~~~~~viv~~--npvd~~t~~~~~~~g~~~~~viG~g  146 (309)
T cd05294          77 IITAGVPRKEGMSRLDLAKKNAKIVKKYAKQIAEFAPDTKILVVT--NPVDVMTYKALKESGFDKNRVFGLG  146 (309)
T ss_pred             EEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchHHHHHHHHHhcCCCHHHEeecc
Confidence            999753221   21 11       11  12234444677777776  55554443321    2334555553

The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox

>TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein

Probab=93.35  E-value=0.13  Score=49.65  Aligned_cols=34  Identities=24%  Similarity=0.423  Sum_probs=30.3

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ||||||-|..|+.+++.+ +.+|.+|+++|+.+..
T Consensus         1 ~igiiG~gql~~~l~~aa-~~lG~~v~~~d~~~~~   34 (352)
T TIGR01161         1 TVGILGGGQLGRMLALAA-RPLGIKVHVLDPDANS   34 (352)
T ss_pred             CEEEECCCHHHHHHHHHH-HHcCCEEEEECCCCCC
Confidence            599999999999999984 7899999999987643

Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP.

>PRK12937 short chain dehydrogenase; Provisional

Probab=93.33  E-value=0.38  Score=43.21  Aligned_cols=36  Identities=25%  Similarity=0.187  Sum_probs=29.7

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      +.++++.|.|- |.||+.+|+.|+ ..|.+|+...++.
T Consensus         3 ~~~~~vlItG~~~~iG~~la~~l~-~~g~~v~~~~~~~   39 (245)
T PRK12937          3 LSNKVAIVTGASRGIGAAIARRLA-ADGFAVAVNYAGS   39 (245)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHH-HCCCEEEEecCCC
Confidence            56899999995 999999999984 6799988766543

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=93.32  E-value=1  Score=42.48  Aligned_cols=105  Identities=15%  Similarity=0.110  Sum_probs=69.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      |++++|||--.=-..+++.| ...|++|..|.-.....               +  ..++......++.++++|+|++-+
T Consensus         1 ~~~~~v~ggd~r~~~~~~~l-~~~g~~v~~~g~~~~~~---------------~--~~~~~~~~~~~~~~~~~~~~i~p~   62 (287)
T TIGR02853         1 GIHIAVIGGDARQLELIRKL-EELDAKISLIGFDQLED---------------G--FTGAVKCELLELDLTTLDVVILPV   62 (287)
T ss_pred             CcEEEEEcccHHHHHHHHHH-HHCCCEEEEEecccccc---------------c--cccceeecchhhhhccCCEEEECC
Confidence            68999999988888899997 57899877664321100               0  012223345566689999999999


Q ss_pred             CCCccc----------ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          245 VLDKTT----------YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       245 pl~~~t----------~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      |.+.+.          +-.++++.++.|+++++ +-+|.+.    .++-++.++..|.
T Consensus        63 ~~~~~~~~i~~~~~~~~~~l~~~~l~~~~~~~~-~~~G~~~----~~l~~~a~~~gi~  115 (287)
T TIGR02853        63 PGTSHDGKVATVFSNEKVVLTPELLESTKGHCT-IYVGISN----PYLEQLAADAGVK  115 (287)
T ss_pred             ccccCCceEecccccCCccccHHHHHhcCCCCE-EEEecCC----HHHHHHHHHCCCe
Confidence            976652          22356889999997654 5555444    5566566655554

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain

Probab=93.29  E-value=0.5  Score=47.47  Aligned_cols=111  Identities=20%  Similarity=0.164  Sum_probs=72.5

Q ss_pred             ccCCCeEEEEec----CHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh
Q 019387          162 LLKGQTVGVIGA----GRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (342)
Q Consensus       162 ~L~gktvgIvG~----G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~  235 (342)
                      -+.-++|.|||.    |++|..+.+.| +..|+  +|+.++|.....                   .+...+.+++++-.
T Consensus         4 l~~p~siavvGaS~~~~~~g~~~~~~l-~~~gf~g~v~~Vnp~~~~i-------------------~G~~~~~sl~~lp~   63 (447)
T TIGR02717         4 LFNPKSVAVIGASRDPGKVGYAIMKNL-IEGGYKGKIYPVNPKAGEI-------------------LGVKAYPSVLEIPD   63 (447)
T ss_pred             ccCCCEEEEEccCCCCCchHHHHHHHH-HhCCCCCcEEEECCCCCcc-------------------CCccccCCHHHCCC
Confidence            356689999999    88999999997 56565  788888764321                   12334578999888


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCC-CcEEEEcCCCcc-----cCHHHHHHHHHcCCceEEE
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKK-EAILVNCSRGPV-----IDEVALVEHLKQNPMFRVG  295 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~-ga~lINvaRG~~-----vd~~aL~~aL~~g~i~~aa  295 (342)
                      .-|++++++|. +.+...+.+ ..+ .+- .++++.-+-++.     -.++.|.+..+++.+.-.+
T Consensus        64 ~~Dlavi~vp~-~~~~~~l~e-~~~-~gv~~~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG  126 (447)
T TIGR02717        64 PVDLAVIVVPA-KYVPQVVEE-CGE-KGVKGAVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG  126 (447)
T ss_pred             CCCEEEEecCH-HHHHHHHHH-HHh-cCCCEEEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence            88999999994 333444433 222 333 444554444332     2357788888777666444

Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=93.12  E-value=0.39  Score=46.49  Aligned_cols=96  Identities=16%  Similarity=0.222  Sum_probs=57.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .|++|.|.|.|.+|..+++. ++.+|++|++.+...+.+.+. ...+       +.... .......+.++....|+++-
T Consensus       183 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~vi~~~~~~~~~~~~-~~~~-------Ga~~vi~~~~~~~~~~~~~~~D~vid  253 (360)
T PLN02586        183 PGKHLGVAGLGGLGHVAVKI-GKAFGLKVTVISSSSNKEDEA-INRL-------GADSFLVSTDPEKMKAAIGTMDYIID  253 (360)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCcchhhhH-HHhC-------CCcEEEcCCCHHHHHhhcCCCCEEEE
Confidence            58899999999999999998 589999998877665432211 1111       11000 00000123333345788887


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      +... +.   .+ ...++.+++|..++.++.
T Consensus       254 ~~g~-~~---~~-~~~~~~l~~~G~iv~vG~  279 (360)
T PLN02586        254 TVSA-VH---AL-GPLLGLLKVNGKLITLGL  279 (360)
T ss_pred             CCCC-HH---HH-HHHHHHhcCCcEEEEeCC
Confidence            7642 11   11 335777888888888764

>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=93.10  E-value=0.98  Score=45.16  Aligned_cols=114  Identities=18%  Similarity=0.137  Sum_probs=67.7

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc-cCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ll~~aDiV~l~  243 (342)
                      +-+++|+|+|.+|.++|+.| ...|.+|.++|...........       .... ....+.. ..+ .+.+.++|+|+..
T Consensus         6 ~~~~~v~G~G~sG~s~a~~L-~~~G~~v~~~D~~~~~~~~~~l-------~~~~-~g~~~~~~~~~-~~~~~~~d~vV~s   75 (448)
T PRK03803          6 DGLHIVVGLGKTGLSVVRFL-ARQGIPFAVMDSREQPPGLDTL-------AREF-PDVELRCGGFD-CELLVQASEIIIS   75 (448)
T ss_pred             CCeEEEEeecHhHHHHHHHH-HhCCCeEEEEeCCCCchhHHHH-------Hhhc-CCcEEEeCCCC-hHHhcCCCEEEEC
Confidence            45899999999999999997 6899999999976532111101       0000 0011110 112 3345679988776


Q ss_pred             CCCCccc----------ccccCHH-HH-hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          244 PVLDKTT----------YHLINKE-RL-ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       244 ~pl~~~t----------~~li~~~-~l-~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      .-..+.+          ..++++. .+ ..++...+-|-=+.|..-...-+...|+.
T Consensus        76 p~i~~~~p~~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~  132 (448)
T PRK03803         76 PGLALDTPALRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA  132 (448)
T ss_pred             CCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence            4322221          1234433 22 23344456677779998888877788865

>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent

Probab=93.10  E-value=0.28  Score=46.92  Aligned_cols=103  Identities=18%  Similarity=0.270  Sum_probs=59.7

Q ss_pred             eEEEEec-CHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc---cCCHHHHhhcCCEEE
Q 019387          167 TVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVIS  241 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~ll~~aDiV~  241 (342)
                      +|+|+|. |+||..+|-.|+. .+.-++..+|..+ ...+.      ..+.. .........   .+++.+.+++||+|+
T Consensus         1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~-a~g~a------~DL~~-~~~~~~i~~~~~~~~~~~~~~daDivv   72 (312)
T TIGR01772         1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG-AAGVA------ADLSH-IPTAASVKGFSGEEGLENALKGADVVV   72 (312)
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC-CcEEE------chhhc-CCcCceEEEecCCCchHHHcCCCCEEE
Confidence            5899999 9999999987642 3445899999876 21110      11111 111111221   123567889999999


Q ss_pred             EcCCCCc---cc--------ccccC--HHHHhcCCCCcEEEEcCCCcccCH
Q 019387          242 LHPVLDK---TT--------YHLIN--KERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       242 l~~pl~~---~t--------~~li~--~~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      ++.-...   ++        ..++.  ...+..-.|.+++|+++-  .+|.
T Consensus        73 itaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsN--PvDv  121 (312)
T TIGR01772        73 IPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITN--PVNS  121 (312)
T ss_pred             EeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecC--chhh
Confidence            8865321   11        12221  124444568899999965  4553

Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.

>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=92.97  E-value=0.4  Score=43.18  Aligned_cols=39  Identities=26%  Similarity=0.309  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .+.++++.|.|- |.||+.+++.|+ ..|.+|++.++++..
T Consensus         2 ~~~~~~vlItGasg~iG~~l~~~l~-~~G~~V~~~~r~~~~   41 (251)
T PRK07231          2 RLEGKVAIVTGASSGIGEGIARRFA-AEGARVVVTDRNEEA   41 (251)
T ss_pred             CcCCcEEEEECCCChHHHHHHHHHH-HCCCEEEEEeCCHHH
Confidence            367899999996 899999999984 679999999988753

>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA

Probab=92.91  E-value=0.28  Score=44.19  Aligned_cols=85  Identities=16%  Similarity=0.198  Sum_probs=53.4

Q ss_pred             EEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhcCCEEEEcC
Q 019387          168 VGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       168 vgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      |.|+|. |.+|+.+++.|. .-+.+|.+.-|.+.+.......       ..+..-  ..+....+|.++++.+|.|++++
T Consensus         1 I~V~GatG~~G~~v~~~L~-~~~~~V~~l~R~~~~~~~~~l~-------~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~   72 (233)
T PF05368_consen    1 ILVTGATGNQGRSVVRALL-SAGFSVRALVRDPSSDRAQQLQ-------ALGAEVVEADYDDPESLVAALKGVDAVFSVT   72 (233)
T ss_dssp             EEEETTTSHHHHHHHHHHH-HTTGCEEEEESSSHHHHHHHHH-------HTTTEEEES-TT-HHHHHHHHTTCSEEEEES
T ss_pred             CEEECCccHHHHHHHHHHH-hCCCCcEEEEeccchhhhhhhh-------cccceEeecccCCHHHHHHHHcCCceEEeec
Confidence            678885 999999999985 5788999887776432221111       111111  12223467888999999999999


Q ss_pred             CCCc-----ccccccCHHHHh
Q 019387          245 VLDK-----TTYHLINKERLA  260 (342)
Q Consensus       245 pl~~-----~t~~li~~~~l~  260 (342)
                      |...     ....++++..=.
T Consensus        73 ~~~~~~~~~~~~~li~Aa~~a   93 (233)
T PF05368_consen   73 PPSHPSELEQQKNLIDAAKAA   93 (233)
T ss_dssp             SCSCCCHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhhhhhhHHHhhhcc
Confidence            8542     234555544433

NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....

>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated

Probab=92.88  E-value=0.27  Score=48.56  Aligned_cols=100  Identities=21%  Similarity=0.181  Sum_probs=59.7

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHH-H-----------HhhhhhhhhccCCCCcccc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEK-F-----------VTAYGQFLKANGEQPVTWK  225 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~--~~~-~-----------~~~~~~~~~~~~~~~~~~~  225 (342)
                      ..|.+++|.|||+|.+|..+|+.|+ ..|. ++..+|...-..  +.. +           .+.....+.. ..+...+.
T Consensus        38 ~~L~~~~VlviG~GGlGs~va~~La-~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~a~~~l~~-~np~v~i~  115 (392)
T PRK07878         38 KRLKNARVLVIGAGGLGSPTLLYLA-AAGVGTLGIVEFDVVDESNLQRQVIHGQSDVGRSKAQSARDSIVE-INPLVNVR  115 (392)
T ss_pred             HHHhcCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecCcccccccccChhcCCChHHHHHHHHHHH-hCCCcEEE
Confidence            5688999999999999999999985 5566 677787543110  000 0           0000000000 00111110


Q ss_pred             ------ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCC
Q 019387          226 ------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (342)
Q Consensus       226 ------~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk  263 (342)
                            ...+..++++++|+|+.|.. +.+++.++|+...+.=+
T Consensus       116 ~~~~~i~~~~~~~~~~~~D~Vvd~~d-~~~~r~~ln~~~~~~~~  158 (392)
T PRK07878        116 LHEFRLDPSNAVELFSQYDLILDGTD-NFATRYLVNDAAVLAGK  158 (392)
T ss_pred             EEeccCChhHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHcCC
Confidence                  11235678999999998874 67888888877665433

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=92.87  E-value=0.51  Score=45.46  Aligned_cols=94  Identities=19%  Similarity=0.178  Sum_probs=58.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCC----HHHHhh--
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASS----MDEVLR--  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----l~~ll~--  235 (342)
                      .|++|.|.|.|.+|+.+++. ++.+|++ |++.++..+.....  ..+       +... .+. ...+    +.++..  
T Consensus       176 ~g~~VlV~G~g~vG~~a~~~-ak~~G~~~Vi~~~~~~~~~~~~--~~~-------Ga~~-~i~~~~~~~~~~i~~~~~~~  244 (358)
T TIGR03451       176 RGDSVAVIGCGGVGDAAIAG-AALAGASKIIAVDIDDRKLEWA--REF-------GATH-TVNSSGTDPVEAIRALTGGF  244 (358)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHHHHH--HHc-------CCce-EEcCCCcCHHHHHHHHhCCC
Confidence            48899999999999999998 5899995 88888776532111  111       1110 000 0112    222222  


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ..|+|+-|... +.+   + ...+..+++|..+|.++-
T Consensus       245 g~d~vid~~g~-~~~---~-~~~~~~~~~~G~iv~~G~  277 (358)
T TIGR03451       245 GADVVIDAVGR-PET---Y-KQAFYARDLAGTVVLVGV  277 (358)
T ss_pred             CCCEEEECCCC-HHH---H-HHHHHHhccCCEEEEECC
Confidence            47899887752 221   2 335778899999998874

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e

Probab=92.82  E-value=0.76  Score=42.61  Aligned_cols=130  Identities=21%  Similarity=0.181  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcC----Cc-------E
Q 019387          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------N  191 (342)
Q Consensus       123 vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~af----g~-------~  191 (342)
                      +|=.+++-+++.+|-.                     |..|...++.|+|.|.-|-.+|+.|. ..    |.       +
T Consensus         4 TaaV~lAgll~Al~~~---------------------g~~l~d~riv~~GAGsAg~gia~ll~-~~~~~~G~~~~eA~~~   61 (255)
T PF03949_consen    4 TAAVVLAGLLNALRVT---------------------GKKLSDQRIVFFGAGSAGIGIARLLV-AAMVREGLSEEEARKR   61 (255)
T ss_dssp             HHHHHHHHHHHHHHHH---------------------TS-GGG-EEEEEB-SHHHHHHHHHHH-HHHHCTTS-HHHHHTT
T ss_pred             hHHHHHHHHHHHHHHh---------------------CCCHHHcEEEEeCCChhHHHHHHHHH-HHHHHhcCCHHHHhcc
Confidence            5556777777777633                     45689999999999999999999874 44    66       5


Q ss_pred             EEEEcCCch-----hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC--CEEEEcCCCCcccccccCHHHHhcCCC
Q 019387          192 LIYYDLYQA-----TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKTTYHLINKERLATMKK  264 (342)
Q Consensus       192 V~~~d~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a--DiV~l~~pl~~~t~~li~~~~l~~mk~  264 (342)
                      ++.+|++.-     .....+...|.    .+.....   ...+|.|+++..  |+++=+--    ..++|+++.++.|.+
T Consensus        62 i~lvD~~Gll~~~r~~l~~~~~~~a----~~~~~~~---~~~~L~eav~~~kPtvLIG~S~----~~g~ft~evv~~Ma~  130 (255)
T PF03949_consen   62 IWLVDSKGLLTDDREDLNPHKKPFA----RKTNPEK---DWGSLLEAVKGAKPTVLIGLSG----QGGAFTEEVVRAMAK  130 (255)
T ss_dssp             EEEEETTEEEBTTTSSHSHHHHHHH----BSSSTTT-----SSHHHHHHCH--SEEEECSS----STTSS-HHHHHHCHH
T ss_pred             EEEEeccceEeccCccCChhhhhhh----ccCcccc---cccCHHHHHHhcCCCEEEEecC----CCCcCCHHHHHHHhc
Confidence            888887631     11222222221    1111111   125999999999  99986632    468999999999987


Q ss_pred             ---CcEEEEcCCCcc---cCHHHHHHH
Q 019387          265 ---EAILVNCSRGPV---IDEVALVEH  285 (342)
Q Consensus       265 ---ga~lINvaRG~~---vd~~aL~~a  285 (342)
                         ..++.=.|.-.-   +..++.+++
T Consensus       131 ~~erPIIF~LSNPt~~aE~~peda~~~  157 (255)
T PF03949_consen  131 HNERPIIFPLSNPTPKAECTPEDAYEW  157 (255)
T ss_dssp             HSSSEEEEE-SSSCGGSSS-HHHHHHT
T ss_pred             cCCCCEEEECCCCCCcccCCHHHHHhh
Confidence               888888877665   344444443

g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=92.79  E-value=0.58  Score=45.36  Aligned_cols=95  Identities=23%  Similarity=0.167  Sum_probs=57.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccC-----CHHHHh--hc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS-----SMDEVL--RE  236 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~l~~ll--~~  236 (342)
                      +.+|.|+|.|.||...+.. ++.+|+ +|++.|+++... +...+..+        .........     ...++-  ..
T Consensus       169 ~~~V~V~GaGpIGLla~~~-a~~~Ga~~Viv~d~~~~Rl-~~A~~~~g--------~~~~~~~~~~~~~~~~~~~t~g~g  238 (350)
T COG1063         169 GGTVVVVGAGPIGLLAIAL-AKLLGASVVIVVDRSPERL-ELAKEAGG--------ADVVVNPSEDDAGAEILELTGGRG  238 (350)
T ss_pred             CCEEEEECCCHHHHHHHHH-HHHcCCceEEEeCCCHHHH-HHHHHhCC--------CeEeecCccccHHHHHHHHhCCCC
Confidence            3399999999999999887 488997 677778877543 22211110        110000001     111232  24


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      +|+++-|... +.    .-...++..++|..++.++=.
T Consensus       239 ~D~vie~~G~-~~----~~~~ai~~~r~gG~v~~vGv~  271 (350)
T COG1063         239 ADVVIEAVGS-PP----ALDQALEALRPGGTVVVVGVY  271 (350)
T ss_pred             CCEEEECCCC-HH----HHHHHHHHhcCCCEEEEEecc
Confidence            9999999872 22    224577888888888887643

>TIGR01761 thiaz-red thiazolinyl imide reductase

Probab=92.79  E-value=0.51  Score=45.75  Aligned_cols=111  Identities=14%  Similarity=0.103  Sum_probs=65.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcC-CcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~af-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|||||. .+|+.-++.+.+.- ++++.+ +|+..+ +.+++-+.|       +     +..+.++++++.+.|+++++
T Consensus         4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~e-rA~~~A~~~-------g-----i~~y~~~eell~d~Di~~V~   69 (343)
T TIGR01761         4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSE-RSRALAHRL-------G-----VPLYCEVEELPDDIDIACVV   69 (343)
T ss_pred             cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHH-HHHHHHHHh-------C-----CCccCCHHHHhcCCCEEEEE
Confidence            58999999 68998888763322 577775 787664 333333333       1     22458999999999999999


Q ss_pred             CCCC-c-ccccccCHHHHhcCCCCc-EEEEcCCCcccCHHHHHHHHHcCCceEE
Q 019387          244 PVLD-K-TTYHLINKERLATMKKEA-ILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       244 ~pl~-~-~t~~li~~~~l~~mk~ga-~lINvaRG~~vd~~aL~~aL~~g~i~~a  294 (342)
                      +|.+ + .++.-+   ..+.++.|. +|+-===. .-+-++|+++.++..+...
T Consensus        70 ipt~~P~~~H~e~---a~~aL~aGkHVL~EKPla-~~Ea~el~~~A~~~g~~l~  119 (343)
T TIGR01761        70 VRSAIVGGQGSAL---ARALLARGIHVLQEHPLH-PRDIQDLLRLAERQGRRYL  119 (343)
T ss_pred             eCCCCCCccHHHH---HHHHHhCCCeEEEcCCCC-HHHHHHHHHHHHHcCCEEE
Confidence            8742 2 232222   333444553 33321111 3455667777666555433

This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).

>PRK06701 short chain dehydrogenase; Provisional

Probab=92.73  E-value=0.45  Score=44.61  Aligned_cols=39  Identities=23%  Similarity=0.256  Sum_probs=32.9

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      ..+.||++.|.|- |.||..+|+.|+ ..|++|+.+++...
T Consensus        42 ~~~~~k~iLItGasggIG~~la~~l~-~~G~~V~l~~r~~~   81 (290)
T PRK06701         42 GKLKGKVALITGGDSGIGRAVAVLFA-KEGADIAIVYLDEH   81 (290)
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence            4678999999984 889999999985 67999999887653

>TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase

Probab=92.72  E-value=0.8  Score=45.52  Aligned_cols=115  Identities=19%  Similarity=0.248  Sum_probs=68.9

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-ccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++.|+|+|.+|.++|+.| +..|.+|.++|.......+....    ... ..+.   .+..-.+ .+.+.++|+|+...-
T Consensus         1 ~~~~iG~G~~G~a~a~~l-~~~G~~V~~sD~~~~~~~~~~~~----~~~~~~gi---~~~~g~~-~~~~~~~d~vv~sp~   71 (433)
T TIGR01087         1 KILILGLGKTGRAVARFL-HKKGAEVTVTDLKPNEELEPSMG----QLRLNEGS---VLHTGLH-LEDLNNADLVVKSPG   71 (433)
T ss_pred             CEEEEEeCHhHHHHHHHH-HHCCCEEEEEeCCCCccchhHHH----HHhhccCc---EEEecCc-hHHhccCCEEEECCC
Confidence            478999999999999997 68999999999765432221000    000 0111   1111122 345678998877643


Q ss_pred             CCccc----------ccccCHHHH--hcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          246 LDKTT----------YHLINKERL--ATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       246 l~~~t----------~~li~~~~l--~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      ..+.+          ..++++..|  ..++...+-|.=+.|..-...=+...|+...
T Consensus        72 i~~~~p~~~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g  128 (433)
T TIGR01087        72 IPPDHPLVQAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAG  128 (433)
T ss_pred             CCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            32221          123443322  3334446777778999888888888887643

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=92.68  E-value=0.58  Score=45.09  Aligned_cols=93  Identities=16%  Similarity=0.179  Sum_probs=58.3

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc--cCCHHHHhh-----
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--ASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~ll~-----  235 (342)
                      .|.+|.|.|. |.+|+.+++. ++.+|++|++.+.+.++. +.....+       +... .+..  ..++.+.+.     
T Consensus       158 ~g~~VlV~GaaG~vG~~aiql-Ak~~G~~Vi~~~~~~~k~-~~~~~~l-------Ga~~-vi~~~~~~~~~~~i~~~~~~  227 (348)
T PLN03154        158 KGDSVFVSAASGAVGQLVGQL-AKLHGCYVVGSAGSSQKV-DLLKNKL-------GFDE-AFNYKEEPDLDAALKRYFPE  227 (348)
T ss_pred             CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEcCCHHHH-HHHHHhc-------CCCE-EEECCCcccHHHHHHHHCCC
Confidence            4889999999 9999999998 589999999887765432 1110011       1111 1111  113433332     


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      ..|+++-|+..  .    .-...++.+++|..++.++
T Consensus       228 gvD~v~d~vG~--~----~~~~~~~~l~~~G~iv~~G  258 (348)
T PLN03154        228 GIDIYFDNVGG--D----MLDAALLNMKIHGRIAVCG  258 (348)
T ss_pred             CcEEEEECCCH--H----HHHHHHHHhccCCEEEEEC
Confidence            36888877642  1    1245678888888888776

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=92.66  E-value=0.38  Score=45.88  Aligned_cols=72  Identities=19%  Similarity=0.295  Sum_probs=42.9

Q ss_pred             eEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCC----CCccccccCCHHHHhhcCCEEE
Q 019387          167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE----QPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +|+|||.|.||..+|..|+. .+.-++..+|...+.......+     +.....    ...... ..+ -+.+++||+|+
T Consensus         1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~D-----L~~~~~~~~~~~~~i~-~~~-y~~~~~aDivv   73 (307)
T cd05290           1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALD-----FHHATALTYSTNTKIR-AGD-YDDCADADIIV   73 (307)
T ss_pred             CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHH-----HHhhhccCCCCCEEEE-ECC-HHHhCCCCEEE
Confidence            58999999999999987642 3444899999875432111111     111010    011111 233 45678999999


Q ss_pred             EcCC
Q 019387          242 LHPV  245 (342)
Q Consensus       242 l~~p  245 (342)
                      ++.-
T Consensus        74 itaG   77 (307)
T cd05290          74 ITAG   77 (307)
T ss_pred             ECCC
Confidence            8854

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK06128 oxidoreductase; Provisional

Probab=92.64  E-value=0.5  Score=44.41  Aligned_cols=36  Identities=25%  Similarity=0.226  Sum_probs=30.0

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~  198 (342)
                      .+.||++.|.|- |.||+.+|+.|+ ..|++|+...+.
T Consensus        52 ~l~~k~vlITGas~gIG~~~a~~l~-~~G~~V~i~~~~   88 (300)
T PRK06128         52 RLQGRKALITGADSGIGRATAIAFA-REGADIALNYLP   88 (300)
T ss_pred             ccCCCEEEEecCCCcHHHHHHHHHH-HcCCEEEEEeCC
Confidence            378999999996 899999999985 679999876543

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=92.61  E-value=0.58  Score=45.71  Aligned_cols=37  Identities=19%  Similarity=0.389  Sum_probs=32.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|++|.|.|.|.+|..+++. ++++|++|++.+...+.
T Consensus       178 ~g~~VlV~G~G~vG~~avq~-Ak~~Ga~Vi~~~~~~~~  214 (375)
T PLN02178        178 SGKRLGVNGLGGLGHIAVKI-GKAFGLRVTVISRSSEK  214 (375)
T ss_pred             CCCEEEEEcccHHHHHHHHH-HHHcCCeEEEEeCChHH
Confidence            48899999999999999998 58999999988876543

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=92.56  E-value=0.64  Score=43.19  Aligned_cols=94  Identities=19%  Similarity=0.181  Sum_probs=57.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccC---CHHHHh--hcC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS---SMDEVL--REA  237 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~l~~ll--~~a  237 (342)
                      .|++|.|+|.|.||...++. ++.+|++ |++.++.+++. +. ...+       +... .+....   .+.++.  ...
T Consensus       120 ~g~~VlV~G~G~vG~~~~~~-ak~~G~~~Vi~~~~~~~r~-~~-a~~~-------Ga~~-~i~~~~~~~~~~~~~~~~g~  188 (280)
T TIGR03366       120 KGRRVLVVGAGMLGLTAAAA-AAAAGAARVVAADPSPDRR-EL-ALSF-------GATA-LAEPEVLAERQGGLQNGRGV  188 (280)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHH-HH-HHHc-------CCcE-ecCchhhHHHHHHHhCCCCC
Confidence            58899999999999999998 5899997 88887765432 11 1111       1100 000000   111221  247


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+++-+.... .   . -...++.++++..++.++-
T Consensus       189 d~vid~~G~~-~---~-~~~~~~~l~~~G~iv~~G~  219 (280)
T TIGR03366       189 DVALEFSGAT-A---A-VRACLESLDVGGTAVLAGS  219 (280)
T ss_pred             CEEEECCCCh-H---H-HHHHHHHhcCCCEEEEecc
Confidence            9998876421 1   1 2345788899999998873

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional

Probab=92.54  E-value=0.37  Score=46.07  Aligned_cols=77  Identities=22%  Similarity=0.229  Sum_probs=49.0

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .+|+|+| -|-.|+++.++|..-=.+++.....+...                   .     ..+.++.+.++|++++|+
T Consensus         3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~-------------------~-----~~~~~~~~~~~DvvFlal   58 (313)
T PRK11863          3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRK-------------------D-----AAARRELLNAADVAILCL   58 (313)
T ss_pred             cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCC-------------------c-----ccCchhhhcCCCEEEECC
Confidence            4799999 79999999999843334465544322111                   0     023345667899999999


Q ss_pred             CCCcccccccCHHHHhcC-CCCcEEEEcC
Q 019387          245 VLDKTTYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~m-k~ga~lINva  272 (342)
                      |-.      ...+..... +.|..+||.+
T Consensus        59 p~~------~s~~~~~~~~~~g~~VIDlS   81 (313)
T PRK11863         59 PDD------AAREAVALIDNPATRVIDAS   81 (313)
T ss_pred             CHH------HHHHHHHHHHhCCCEEEECC
Confidence            942      223333332 4688899887

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=92.53  E-value=0.13  Score=53.96  Aligned_cols=93  Identities=19%  Similarity=0.188  Sum_probs=56.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH----HhhcCCEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLREADVI  240 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----ll~~aDiV  240 (342)
                      ...|-|+|+|++|+.+|+.| +..|.++++.|.+++.. +...        +.+.. .-+-..++.+-    =+.++|.+
T Consensus       400 ~~~vII~G~Gr~G~~va~~L-~~~g~~vvvID~d~~~v-~~~~--------~~g~~-v~~GDat~~~~L~~agi~~A~~v  468 (621)
T PRK03562        400 QPRVIIAGFGRFGQIVGRLL-LSSGVKMTVLDHDPDHI-ETLR--------KFGMK-VFYGDATRMDLLESAGAAKAEVL  468 (621)
T ss_pred             cCcEEEEecChHHHHHHHHH-HhCCCCEEEEECCHHHH-HHHH--------hcCCe-EEEEeCCCHHHHHhcCCCcCCEE
Confidence            46899999999999999997 68899999999887542 2211        11211 11111122221    24589999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEE
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVN  270 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lIN  270 (342)
                      +++.+.++.+..++  ...+.+.|...++-
T Consensus       469 vv~~~d~~~n~~i~--~~ar~~~p~~~iia  496 (621)
T PRK03562        469 INAIDDPQTSLQLV--ELVKEHFPHLQIIA  496 (621)
T ss_pred             EEEeCCHHHHHHHH--HHHHHhCCCCeEEE
Confidence            99997655544333  23344445544443

>PRK14805 ornithine carbamoyltransferase; Provisional

Probab=92.53  E-value=9.9  Score=36.18  Aligned_cols=104  Identities=11%  Similarity=0.097  Sum_probs=58.2

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|++|+++|=+ ++.++.+..+ ..||++|.+..|..-...+...+....+....+   ..+....++ +.++++|+|
T Consensus       144 ~l~g~kva~vGD~~~v~~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g---~~~~~~~d~-~a~~~aDvv  218 (302)
T PRK14805        144 DVSKVKLAYVGDGNNVTHSLMYGA-AILGATMTVICPPGHFPDGQIVAEAQELAAKSG---GKLVLTSDI-EAIEGHDAI  218 (302)
T ss_pred             CcCCcEEEEEcCCCccHHHHHHHH-HHcCCEEEEECCchhcCCHHHHHHHHHHHHHcC---CEEEEEcCH-HHHCCCCEE
Confidence            3789999999974 6677888876 579999999887543222221111001111112   122233555 468999999


Q ss_pred             EEcCCCC---c----c-----cccccCHHHHhcCCCCcEEEEc
Q 019387          241 SLHPVLD---K----T-----TYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       241 ~l~~pl~---~----~-----t~~li~~~~l~~mk~ga~lINv  271 (342)
                      ..-.-..   +    +     ...-++++.++.+|+. +|.-+
T Consensus       219 y~~~w~~~~~~~~~~~~~~~~~~y~vt~~~l~~a~~~-~vmH~  260 (302)
T PRK14805        219 YTDTWISMGDDTPLAEIKAKFAPYQVNKALMEKAGAT-FVMHC  260 (302)
T ss_pred             EeeceEeCCCccccHHHHHhccCCcCCHHHHhcCCCC-eEECC
Confidence            7633110   0    0     1234566677766665 44433

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=92.44  E-value=0.61  Score=44.10  Aligned_cols=95  Identities=19%  Similarity=0.154  Sum_probs=59.7

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHh-----hc
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVL-----RE  236 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll-----~~  236 (342)
                      .|.+|.|.| -|.+|+.+++. ++.+|++|++.+++.+.. +. ...+       +.... ......++.+.+     ..
T Consensus       138 ~g~~VLI~ga~g~vG~~aiql-Ak~~G~~Vi~~~~s~~~~-~~-~~~l-------Ga~~vi~~~~~~~~~~~~~~~~~~g  207 (325)
T TIGR02825       138 GGETVMVNAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEKV-AY-LKKL-------GFDVAFNYKTVKSLEETLKKASPDG  207 (325)
T ss_pred             CCCEEEEeCCccHHHHHHHHH-HHHcCCEEEEEeCCHHHH-HH-HHHc-------CCCEEEeccccccHHHHHHHhCCCC
Confidence            478999999 59999999998 589999999887765432 11 1111       11110 001111333322     23


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      .|+++-++.. +    .+ ...++.++++..+|.++..
T Consensus       208 vdvv~d~~G~-~----~~-~~~~~~l~~~G~iv~~G~~  239 (325)
T TIGR02825       208 YDCYFDNVGG-E----FS-NTVIGQMKKFGRIAICGAI  239 (325)
T ss_pred             eEEEEECCCH-H----HH-HHHHHHhCcCcEEEEecch
Confidence            6888877652 1    12 5678889999999998753

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.34  E-value=0.79  Score=43.54  Aligned_cols=95  Identities=13%  Similarity=0.095  Sum_probs=56.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh---hcCCEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVI  240 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll---~~aDiV  240 (342)
                      .|++|.|.|-|.+|+.+++. ++++|++|++.++..+.. +. ...+       +....-.....++.+.+   ...|++
T Consensus       163 ~~~~vlV~g~g~iG~~~~~~-a~~~G~~vi~~~~~~~~~-~~-~~~~-------g~~~~i~~~~~~~~~~~~~~~~~d~v  232 (333)
T cd08296         163 PGDLVAVQGIGGLGHLAVQY-AAKMGFRTVAISRGSDKA-DL-ARKL-------GAHHYIDTSKEDVAEALQELGGAKLI  232 (333)
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHCCCeEEEEeCChHHH-HH-HHHc-------CCcEEecCCCccHHHHHHhcCCCCEE
Confidence            47899999999999999998 589999999988765432 11 1111       11000000111222222   346888


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      +-+....     -.-...+..++++..+++++-
T Consensus       233 i~~~g~~-----~~~~~~~~~l~~~G~~v~~g~  260 (333)
T cd08296         233 LATAPNA-----KAISALVGGLAPRGKLLILGA  260 (333)
T ss_pred             EECCCch-----HHHHHHHHHcccCCEEEEEec
Confidence            8665311     122345777888888888764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>PRK15057 UDP-glucose 6-dehydrogenase; Provisional

Probab=92.24  E-value=0.42  Score=47.11  Aligned_cols=65  Identities=15%  Similarity=0.144  Sum_probs=49.7

Q ss_pred             cCCCeEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH
Q 019387          163 LKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (342)
Q Consensus       163 L~gktvgIvG~----------G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  232 (342)
                      ..|++|+|+|+          ..-+..+++.| ...|++|.+|||......                 ..+....+++.+
T Consensus       294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L-~~~G~~v~~~DP~~~~~~-----------------~~~~~~~~~~~~  355 (388)
T PRK15057        294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRI-KAKGVEVIIYEPVMKEDS-----------------FFNSRLERDLAT  355 (388)
T ss_pred             hcCCEEEEEcceeCCCCCccccChHHHHHHHH-HhCCCEEEEECCCCCchh-----------------hcCCeeeCCHHH
Confidence            46899999999          34567888987 688999999999854320                 112335689999


Q ss_pred             HhhcCCEEEEcCC
Q 019387          233 VLREADVISLHPV  245 (342)
Q Consensus       233 ll~~aDiV~l~~p  245 (342)
                      ++++||.|++..-
T Consensus       356 ~~~~~~~~~~~~~  368 (388)
T PRK15057        356 FKQQADVIISNRM  368 (388)
T ss_pred             HHHhCCEEEEcCC
Confidence            9999999987753

>PRK15076 alpha-galactosidase; Provisional

Probab=92.21  E-value=0.55  Score=46.98  Aligned_cols=125  Identities=13%  Similarity=0.093  Sum_probs=70.7

Q ss_pred             CeEEEEecCHHHHHHHH--HHH--hcC-CcEEEEEcCCchhHH--HHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          166 QTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~--~l~--~af-g~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      .+|+|||.|.+|...+-  .++  +++ +.+|..||..++...  .....   ...... .....+....++.+.+++||
T Consensus         2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~---~~~~~~-~~~~~i~~ttD~~eal~dAD   77 (431)
T PRK15076          2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVAR---KLAESL-GASAKITATTDRREALQGAD   77 (431)
T ss_pred             cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHH---HHHHhc-CCCeEEEEECCHHHHhCCCC
Confidence            47999999999955443  222  345 459999999875321  11111   111111 12233444568889999999


Q ss_pred             EEEEcCCCCccc-c-----------ccc-----------------C-------HHHHhcCCCCcEEEEcCCCcccCHHHH
Q 019387          239 VISLHPVLDKTT-Y-----------HLI-----------------N-------KERLATMKKEAILVNCSRGPVIDEVAL  282 (342)
Q Consensus       239 iV~l~~pl~~~t-~-----------~li-----------------~-------~~~l~~mk~ga~lINvaRG~~vd~~aL  282 (342)
                      ||+.+.-..... .           |++                 +       .+.+....|++.+||++-.--+-..++
T Consensus        78 fVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP~divt~~~  157 (431)
T PRK15076         78 YVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNPMAMNTWAM  157 (431)
T ss_pred             EEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH
Confidence            998886543111 1           111                 1       123444558999999987664444455


Q ss_pred             HHHHHcCCceEEE
Q 019387          283 VEHLKQNPMFRVG  295 (342)
Q Consensus       283 ~~aL~~g~i~~aa  295 (342)
                      ... ...++.|.+
T Consensus       158 ~~~-~~~rviG~c  169 (431)
T PRK15076        158 NRY-PGIKTVGLC  169 (431)
T ss_pred             hcC-CCCCEEEEC
Confidence            422 333454444

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=92.20  E-value=0.72  Score=44.28  Aligned_cols=37  Identities=27%  Similarity=0.424  Sum_probs=32.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|++|.|.|.|.||..+++. ++..|.+|++.+++++.
T Consensus       166 ~g~~VlV~G~G~vG~~a~~~-a~~~G~~vi~~~~~~~~  202 (349)
T TIGR03201       166 KGDLVIVIGAGGVGGYMVQT-AKAMGAAVVAIDIDPEK  202 (349)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCeEEEEcCCHHH
Confidence            48899999999999999998 58999999998887654

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>PLN00106 malate dehydrogenase

Probab=92.15  E-value=0.4  Score=46.09  Aligned_cols=105  Identities=24%  Similarity=0.287  Sum_probs=60.1

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCC-Cc-cccccCCHHHHhhcCCE
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PV-TWKRASSMDEVLREADV  239 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~ll~~aDi  239 (342)
                      ..++|+|+|. |+||..+|..|+. .+.-++..+|... ...+. .+     +...... .. .+...+++.+.+++||+
T Consensus        17 ~~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~-~~g~a-~D-----l~~~~~~~~i~~~~~~~d~~~~l~~aDi   89 (323)
T PLN00106         17 PGFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN-TPGVA-AD-----VSHINTPAQVRGFLGDDQLGDALKGADL   89 (323)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC-CCeeE-ch-----hhhCCcCceEEEEeCCCCHHHHcCCCCE
Confidence            3469999999 9999999998742 3444899999866 11100 00     1100000 11 11123456788999999


Q ss_pred             EEEcCCC--Cc-cccc-cc--C----H---HHHhcCCCCcEEEEcCCCc
Q 019387          240 ISLHPVL--DK-TTYH-LI--N----K---ERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       240 V~l~~pl--~~-~t~~-li--~----~---~~l~~mk~ga~lINvaRG~  275 (342)
                      |+++.-.  .+ +++. ++  |    +   +.+....+.+++++++---
T Consensus        90 VVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv  138 (323)
T PLN00106         90 VIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV  138 (323)
T ss_pred             EEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence            9887543  21 1221 11  1    1   2344445788999987543

>PRK10206 putative oxidoreductase; Provisional

Probab=92.10  E-value=0.42  Score=46.25  Aligned_cols=69  Identities=14%  Similarity=0.219  Sum_probs=43.1

Q ss_pred             eEEEEecCHHHHH-HHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEE
Q 019387          167 TVGVIGAGRIGSA-YARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       167 tvgIvG~G~IG~~-vA~~l~~a-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~  241 (342)
                      ++||||+|.|++. .+..+... -++++. ++|+.++..  .+.+.|       +    ....++++++++.  +-|+|+
T Consensus         3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~--~~~~~~-------~----~~~~~~~~~ell~~~~iD~V~   69 (344)
T PRK10206          3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE--EQAPIY-------S----HIHFTSDLDEVLNDPDVKLVV   69 (344)
T ss_pred             EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHH--HHHHhc-------C----CCcccCCHHHHhcCCCCCEEE
Confidence            7999999998864 34433222 267876 588875322  221111       1    1123578999996  569999


Q ss_pred             EcCCCCc
Q 019387          242 LHPVLDK  248 (342)
Q Consensus       242 l~~pl~~  248 (342)
                      +|+|...
T Consensus        70 I~tp~~~   76 (344)
T PRK10206         70 VCTHADS   76 (344)
T ss_pred             EeCCchH
Confidence            9999543

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=92.07  E-value=0.79  Score=43.64  Aligned_cols=95  Identities=17%  Similarity=0.129  Sum_probs=58.3

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHh-----hc
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVL-----RE  236 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll-----~~  236 (342)
                      .|++|.|.|. |.+|+.+++. ++.+|++|++.++..+..... .+.+       +.... ......++.+.+     ..
T Consensus       151 ~g~~VlI~Ga~G~vG~~aiql-Ak~~G~~Vi~~~~~~~~~~~~-~~~l-------Ga~~vi~~~~~~~~~~~i~~~~~~g  221 (338)
T cd08295         151 KGETVFVSAASGAVGQLVGQL-AKLKGCYVVGSAGSDEKVDLL-KNKL-------GFDDAFNYKEEPDLDAALKRYFPNG  221 (338)
T ss_pred             CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHH-HHhc-------CCceeEEcCCcccHHHHHHHhCCCC
Confidence            4889999998 9999999998 589999999887765432111 0001       11110 000111333322     24


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+++-++..  .    .-.+.++.++++..++.++.
T Consensus       222 vd~v~d~~g~--~----~~~~~~~~l~~~G~iv~~G~  252 (338)
T cd08295         222 IDIYFDNVGG--K----MLDAVLLNMNLHGRIAACGM  252 (338)
T ss_pred             cEEEEECCCH--H----HHHHHHHHhccCcEEEEecc
Confidence            6888877642  1    12466888889989988763

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=92.06  E-value=0.68  Score=44.06  Aligned_cols=96  Identities=17%  Similarity=0.221  Sum_probs=59.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .|.++.|.|.|.+|+.+++. ++++|++|++.++..+.....  ..+       +.... ........++.-...|+++.
T Consensus       169 ~g~~vlV~g~g~vG~~~~~~-a~~~G~~v~~~~~~~~~~~~~--~~~-------g~~~vi~~~~~~~~~~~~~~~d~v~~  238 (337)
T cd05283         169 PGKRVGVVGIGGLGHLAVKF-AKALGAEVTAFSRSPSKKEDA--LKL-------GADEFIATKDPEAMKKAAGSLDLIID  238 (337)
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHcCCeEEEEcCCHHHHHHH--HHc-------CCcEEecCcchhhhhhccCCceEEEE
Confidence            46799999999999999988 489999999988775432111  111       11000 00000111222356789998


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      |.+..     ......++.++++..+++++..
T Consensus       239 ~~g~~-----~~~~~~~~~l~~~G~~v~~g~~  265 (337)
T cd05283         239 TVSAS-----HDLDPYLSLLKPGGTLVLVGAP  265 (337)
T ss_pred             CCCCc-----chHHHHHHHhcCCCEEEEEecc
Confidence            87642     1235567888888888888643

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=92.06  E-value=0.38  Score=40.91  Aligned_cols=31  Identities=35%  Similarity=0.583  Sum_probs=24.9

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEE-EcC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDL  197 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~  197 (342)
                      +|||+|+|+||+.+++.+.+.-++++.+ +|+
T Consensus         2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d~   33 (149)
T smart00846        2 KVGINGFGRIGRLVLRALLERPDIEVVAINDL   33 (149)
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCEEEEeecC
Confidence            7999999999999999864345788776 554

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PRK12742 oxidoreductase; Provisional

Probab=91.98  E-value=1.1  Score=40.00  Aligned_cols=35  Identities=26%  Similarity=0.266  Sum_probs=29.4

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~  198 (342)
                      +.||++.|.|- |.||+.+|+.| ...|++|+...+.
T Consensus         4 ~~~k~vlItGasggIG~~~a~~l-~~~G~~v~~~~~~   39 (237)
T PRK12742          4 FTGKKVLVLGGSRGIGAAIVRRF-VTDGANVRFTYAG   39 (237)
T ss_pred             CCCCEEEEECCCChHHHHHHHHH-HHCCCEEEEecCC
Confidence            67899999995 89999999998 4779999876543

>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional

Probab=91.97  E-value=0.64  Score=42.92  Aligned_cols=35  Identities=23%  Similarity=0.223  Sum_probs=30.3

Q ss_pred             cCCCeEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCC
Q 019387          163 LKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       163 L~gktvgIvG~G---~IG~~vA~~l~~afg~~V~~~d~~  198 (342)
                      +.||++.|.|-|   .||+++|+.|+ .-|++|+..++.
T Consensus         4 l~~k~~lITGas~~~GIG~aia~~la-~~G~~vil~~r~   41 (262)
T PRK07984          4 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQN   41 (262)
T ss_pred             cCCCEEEEeCCCCCccHHHHHHHHHH-HCCCEEEEEecc
Confidence            679999999987   69999999985 579999887765

>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form

Probab=91.96  E-value=0.57  Score=44.72  Aligned_cols=76  Identities=18%  Similarity=0.194  Sum_probs=50.1

Q ss_pred             eEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|+|+|- |-.|.++.++|+.--.+++.....+...                        ...+.+++++++|++++|+|
T Consensus         3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~~------------------------~~~~~~~~~~~~D~vFlalp   58 (310)
T TIGR01851         3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRRK------------------------DAAERAKLLNAADVAILCLP   58 (310)
T ss_pred             eEEEECCCChhHHHHHHHHhCCCCeEEEEEeccccc------------------------CcCCHhHhhcCCCEEEECCC
Confidence            6899985 8999999999864456677655322110                        01245677789999999999


Q ss_pred             CCcccccccCHHHHhcC-CCCcEEEEcC
Q 019387          246 LDKTTYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       246 l~~~t~~li~~~~l~~m-k~ga~lINva  272 (342)
                      -. .++     +..... +.|..+||.+
T Consensus        59 ~~-~s~-----~~~~~~~~~g~~VIDlS   80 (310)
T TIGR01851        59 DD-AAR-----EAVSLVDNPNTCIIDAS   80 (310)
T ss_pred             HH-HHH-----HHHHHHHhCCCEEEECC
Confidence            43 222     222222 4688888887

This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.

>PLN02740 Alcohol dehydrogenase-like

Probab=91.93  E-value=0.8  Score=44.64  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=32.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~  201 (342)
                      .|++|.|+|.|.||..+++. ++.+|+ +|++.++.++.
T Consensus       198 ~g~~VlV~G~G~vG~~a~q~-ak~~G~~~Vi~~~~~~~r  235 (381)
T PLN02740        198 AGSSVAIFGLGAVGLAVAEG-ARARGASKIIGVDINPEK  235 (381)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCCcEEEEcCChHH
Confidence            58899999999999999998 589999 69888877643

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=91.91  E-value=0.99  Score=43.16  Aligned_cols=95  Identities=19%  Similarity=0.174  Sum_probs=59.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC----HHHHhh--c
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDEVLR--E  236 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~ll~--~  236 (342)
                      .|++|.|.|.|.+|+.+++. ++..|+ +|++.+.+.+.. +. ...+       +....-.....+    +.++..  .
T Consensus       172 ~g~~vlI~g~g~vG~~a~q~-a~~~G~~~v~~~~~~~~~~-~~-~~~~-------ga~~~i~~~~~~~~~~l~~~~~~~~  241 (351)
T cd08233         172 PGDTALVLGAGPIGLLTILA-LKAAGASKIIVSEPSEARR-EL-AEEL-------GATIVLDPTEVDVVAEVRKLTGGGG  241 (351)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHH-HH-HHHh-------CCCEEECCCccCHHHHHHHHhCCCC
Confidence            47899999999999999998 589999 788888765432 11 1111       111000000112    223332  3


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+++-+.... .    .-...++.++++..++.++.
T Consensus       242 ~d~vid~~g~~-~----~~~~~~~~l~~~G~~v~~g~  273 (351)
T cd08233         242 VDVSFDCAGVQ-A----TLDTAIDALRPRGTAVNVAI  273 (351)
T ss_pred             CCEEEECCCCH-H----HHHHHHHhccCCCEEEEEcc
Confidence            89999887521 1    12456778899999998864

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>PRK09189 uroporphyrinogen-III synthase; Validated

Probab=91.83  E-value=2.1  Score=38.91  Aligned_cols=54  Identities=13%  Similarity=0.179  Sum_probs=33.3

Q ss_pred             eEEEEeCCCCchH-HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEec
Q 019387           16 YRVVSTKPMPGTR-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ   69 (342)
Q Consensus        16 ~~vl~~~~~~~~~-~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~   69 (342)
                      |+||+|++-+... +.+.|++.|.++...+.-+....+++....+...+|.++..
T Consensus         1 m~VLvTRp~~~~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~l~~~~d~iifT   55 (240)
T PRK09189          1 MRVLVTRPEPAAERTAARLRAMGHEPVLLPLSRPVHDVAAAFTALSEPHGAIAVT   55 (240)
T ss_pred             CeEEEECCCCchHHHHHHHHHCCCceEEecccccccChhhhhhhhcCCcCEEEEE
Confidence            5899999888744 44788999999877654332222233333333336777654

>PTZ00325 malate dehydrogenase; Provisional

Probab=91.83  E-value=0.53  Score=45.21  Aligned_cols=77  Identities=25%  Similarity=0.274  Sum_probs=46.2

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccccc---CCHHHHhhc
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVLRE  236 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~ll~~  236 (342)
                      .+..++|+|+|. |+||..+|..|+ ++..-++..+|.... ..+.      ..+..... .......   .+..+.+++
T Consensus         5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~-~g~a------~Dl~~~~~-~~~v~~~td~~~~~~~l~g   76 (321)
T PTZ00325          5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGA-PGVA------ADLSHIDT-PAKVTGYADGELWEKALRG   76 (321)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCC-cccc------cchhhcCc-CceEEEecCCCchHHHhCC
Confidence            456779999999 999999998863 145558999998321 1100      00111011 1111111   223678899


Q ss_pred             CCEEEEcCCC
Q 019387          237 ADVISLHPVL  246 (342)
Q Consensus       237 aDiV~l~~pl  246 (342)
                      ||+|+++.-.
T Consensus        77 aDvVVitaG~   86 (321)
T PTZ00325         77 ADLVLICAGV   86 (321)
T ss_pred             CCEEEECCCC
Confidence            9999888653

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=91.82  E-value=0.84  Score=42.92  Aligned_cols=94  Identities=20%  Similarity=0.184  Sum_probs=56.7

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-----hcC
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-----~~a  237 (342)
                      .|.+|.|.| -|.+|+.+++. ++.+|++|++.+.+.+.. + +...+       +....-.....++.+.+     ...
T Consensus       143 ~g~~vlI~ga~g~vG~~aiql-A~~~G~~vi~~~~s~~~~-~-~l~~~-------Ga~~vi~~~~~~~~~~v~~~~~~gv  212 (329)
T cd08294         143 AGETVVVNGAAGAVGSLVGQI-AKIKGCKVIGCAGSDDKV-A-WLKEL-------GFDAVFNYKTVSLEEALKEAAPDGI  212 (329)
T ss_pred             CCCEEEEecCccHHHHHHHHH-HHHcCCEEEEEeCCHHHH-H-HHHHc-------CCCEEEeCCCccHHHHHHHHCCCCc
Confidence            478999999 69999999998 589999999887765432 1 11111       11111000112222222     235


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+|+-+...  .    .....++.++++..++.++.
T Consensus       213 d~vld~~g~--~----~~~~~~~~l~~~G~iv~~g~  242 (329)
T cd08294         213 DCYFDNVGG--E----FSSTVLSHMNDFGRVAVCGS  242 (329)
T ss_pred             EEEEECCCH--H----HHHHHHHhhccCCEEEEEcc
Confidence            777766542  1    12566788888888888763

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=91.73  E-value=0.83  Score=44.11  Aligned_cols=96  Identities=17%  Similarity=0.175  Sum_probs=59.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .|+++.|.|.|.+|+.+++. ++..|++|++.+...+.+.. ....+       +.... .......+.++....|+++-
T Consensus       180 ~g~~vlV~G~G~vG~~av~~-Ak~~G~~vi~~~~~~~~~~~-~~~~~-------Ga~~~i~~~~~~~~~~~~~~~D~vid  250 (357)
T PLN02514        180 SGLRGGILGLGGVGHMGVKI-AKAMGHHVTVISSSDKKREE-ALEHL-------GADDYLVSSDAAEMQEAADSLDYIID  250 (357)
T ss_pred             CCCeEEEEcccHHHHHHHHH-HHHCCCeEEEEeCCHHHHHH-HHHhc-------CCcEEecCCChHHHHHhcCCCcEEEE
Confidence            57899999999999999998 58999999888776543221 11111       11000 00001123333345799998


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |++...     .-...++.+++|..++.++.
T Consensus       251 ~~g~~~-----~~~~~~~~l~~~G~iv~~G~  276 (357)
T PLN02514        251 TVPVFH-----PLEPYLSLLKLDGKLILMGV  276 (357)
T ss_pred             CCCchH-----HHHHHHHHhccCCEEEEECC
Confidence            876311     12345778888988888874

>KOG4230 consensus C1-tetrahydrofolate synthase [Coenzyme transport and metabolism]

Probab=91.72  E-value=0.58  Score=47.76  Aligned_cols=82  Identities=17%  Similarity=0.267  Sum_probs=62.5

Q ss_pred             cccCCCeEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          161 NLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~I-G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      ..+.|+...++|-..| |..++..| +-....|..+-.                            ...++.+.+.++|+
T Consensus       158 v~v~Gk~aVVlGRS~IVG~Pia~LL-~~~NaTVTiCHS----------------------------KT~~lae~v~~ADI  208 (935)
T KOG4230|consen  158 VFVAGKNAVVLGRSKIVGSPIAALL-LWANATVTICHS----------------------------KTRNLAEKVSRADI  208 (935)
T ss_pred             CccccceeEEEecccccCChHHHHH-HhcCceEEEecC----------------------------CCccHHHHhccCCE
Confidence            5689999999998875 88999887 677888887532                            12578999999999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd  278 (342)
                      |+..+-..    +++-.   .++|||+++|+++---+-|
T Consensus       209 vIvAiG~P----efVKg---dWiKpGavVIDvGINyvpD  240 (935)
T KOG4230|consen  209 VIVAIGQP----EFVKG---DWIKPGAVVIDVGINYVPD  240 (935)
T ss_pred             EEEEcCCc----ceeec---ccccCCcEEEEccccccCC
Confidence            99998642    33333   5788999999998654444

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=91.71  E-value=0.34  Score=36.16  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=29.5

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      ++.|||-|.+|-++|..| ..+|.+|+.+++.+.
T Consensus         1 ~vvViGgG~ig~E~A~~l-~~~g~~vtli~~~~~   33 (80)
T PF00070_consen    1 RVVVIGGGFIGIELAEAL-AELGKEVTLIERSDR   33 (80)
T ss_dssp             EEEEESSSHHHHHHHHHH-HHTTSEEEEEESSSS
T ss_pred             CEEEECcCHHHHHHHHHH-HHhCcEEEEEeccch
Confidence            588999999999999998 689999999988764

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1

Probab=91.66  E-value=1  Score=42.49  Aligned_cols=38  Identities=18%  Similarity=0.233  Sum_probs=32.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~  199 (342)
                      ..|..++|.|+|+|.+|.++|+.|+ ..|. ++..+|...
T Consensus        15 ~kL~~s~VLIvG~gGLG~EiaKnLa-laGVg~itI~D~d~   53 (286)
T cd01491          15 KKLQKSNVLISGLGGLGVEIAKNLI-LAGVKSVTLHDTKP   53 (286)
T ss_pred             HHHhcCcEEEEcCCHHHHHHHHHHH-HcCCCeEEEEcCCc
Confidence            4588999999999999999999985 5677 688888654

E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=91.63  E-value=0.6  Score=44.59  Aligned_cols=91  Identities=15%  Similarity=0.101  Sum_probs=56.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .|.+|.|.|.|.+|...++. ++..|++|++.++++++...  ...+       +.... +...   ++.-...|+++.+
T Consensus       165 ~g~~VlV~G~g~iG~~a~~~-a~~~G~~vi~~~~~~~~~~~--a~~~-------Ga~~v-i~~~---~~~~~~~d~~i~~  230 (329)
T TIGR02822       165 PGGRLGLYGFGGSAHLTAQV-ALAQGATVHVMTRGAAARRL--ALAL-------GAASA-GGAY---DTPPEPLDAAILF  230 (329)
T ss_pred             CCCEEEEEcCCHHHHHHHHH-HHHCCCeEEEEeCChHHHHH--HHHh-------CCcee-cccc---ccCcccceEEEEC
Confidence            38899999999999998887 58999999998887654311  1111       11110 0000   0001235776665


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ... .+    .-...++.+++|..++.++-
T Consensus       231 ~~~-~~----~~~~~~~~l~~~G~~v~~G~  255 (329)
T TIGR02822       231 APA-GG----LVPPALEALDRGGVLAVAGI  255 (329)
T ss_pred             CCc-HH----HHHHHHHhhCCCcEEEEEec
Confidence            543 11    23456788899988888774

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]

Probab=91.59  E-value=0.95  Score=43.77  Aligned_cols=127  Identities=18%  Similarity=0.266  Sum_probs=93.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh---hcCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll---~~aDiV~l  242 (342)
                      ..+|++|++-|||.++-.+ ..-|+.|.+|+|..++. +.+.+.     ..++.   ......++++++   +.-..|++
T Consensus         7 ~digLiGLaVMGqnLiLN~-~d~Gf~v~~yNRT~skv-D~flan-----eak~~---~i~ga~S~ed~v~klk~PR~iil   76 (487)
T KOG2653|consen    7 ADIGLIGLAVMGQNLILNI-ADKGFTVCAYNRTTSKV-DEFLAN-----EAKGT---KIIGAYSLEDFVSKLKKPRVIIL   76 (487)
T ss_pred             cchhhhhHhhhhhhhhhcc-cccCceEEEeccchHhH-HHHHHH-----hhcCC---cccCCCCHHHHHHhcCCCcEEEE
Confidence            4699999999999999886 47899999999987643 333221     11221   223446888775   44566766


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      .+-...-...+| ++....|.+|-++|+-+-..--|+.--.+.|.+..|...+.-|.-.|-
T Consensus        77 lvkAG~pVD~~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEE  136 (487)
T KOG2653|consen   77 LVKAGAPVDQFI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEE  136 (487)
T ss_pred             EeeCCCcHHHHH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCccc
Confidence            665443333333 456677889999999999999999999999998888889998988886

>PRK02261 methylaspartate mutase subunit S; Provisional

Probab=91.57  E-value=2.6  Score=35.27  Aligned_cols=113  Identities=15%  Similarity=-0.078  Sum_probs=67.9

Q ss_pred             CCceEEEEeCCC---Cc---hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhC-CCceEEEecCCC----CccHHHHHH
Q 019387           13 NGKYRVVSTKPM---PG---TRWINLLIEQDCRVEICTQKKTILSVEDIIALIG-DKCDGVIGQLTE----DWGETLFAA   81 (342)
Q Consensus        13 ~~~~~vl~~~~~---~~---~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-~~~d~vi~~~~~----~~~~e~l~~   81 (342)
                      |.+++||+...-   |+   ......|+..|+++.....   ..+.+++.+.+. .++|+|......    ..-+++++.
T Consensus         1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~---~vp~e~i~~~a~~~~~d~V~lS~~~~~~~~~~~~~~~~   77 (137)
T PRK02261          1 MKKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGV---MTSQEEFIDAAIETDADAILVSSLYGHGEIDCRGLREK   77 (137)
T ss_pred             CCCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCC---CCCHHHHHHHHHHcCCCEEEEcCccccCHHHHHHHHHH
Confidence            456676665322   22   1233567889999986543   457888877654 357888765321    222455666


Q ss_pred             hhccCC-ce-EEEccccC-----CccChhHHHhCCeeEecCCCCCchhHHHHHH
Q 019387           82 LSRAGG-KA-FSNMAVGY-----NNVDVNAANKYGIAVGNTPGVLTETTAELAA  128 (342)
Q Consensus        82 l~~l~~-k~-i~~~~~G~-----d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l  128 (342)
                      +...+. +. |..-|+-.     ...+.+.+++.|+..+..|+...+.++++.-
T Consensus        78 L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~  131 (137)
T PRK02261         78 CIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLK  131 (137)
T ss_pred             HHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHH
Confidence            655433 11 22333221     2345678999999999999988777777653

>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP

Probab=91.53  E-value=0.2  Score=41.49  Aligned_cols=34  Identities=26%  Similarity=0.331  Sum_probs=27.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~  199 (342)
                      .++|.|+|+|.+|..+|+.|+ ..|+ ++..+|...
T Consensus         2 ~~~v~iiG~G~vGs~va~~L~-~~Gv~~i~lvD~d~   36 (135)
T PF00899_consen    2 NKRVLIIGAGGVGSEVAKNLA-RSGVGKITLVDDDI   36 (135)
T ss_dssp             T-EEEEESTSHHHHHHHHHHH-HHTTSEEEEEESSB
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HhCCCceeecCCcc
Confidence            579999999999999999985 5577 788888653

Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....

>PLN02214 cinnamoyl-CoA reductase

Probab=91.52  E-value=0.62  Score=44.78  Aligned_cols=83  Identities=12%  Similarity=-0.016  Sum_probs=49.6

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.+++|.|.|- |-||+.+++.| ..-|.+|.+.++..+................-...........+++++++.+|+|
T Consensus         7 ~~~~~~vlVTGatGfIG~~l~~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~V   85 (342)
T PLN02214          7 SPAGKTVCVTGAGGYIASWIVKIL-LERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGV   85 (342)
T ss_pred             cCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEE
Confidence            467899999998 99999999998 4678999998876543111111100000000000001112234677888999998


Q ss_pred             EEcCC
Q 019387          241 SLHPV  245 (342)
Q Consensus       241 ~l~~p  245 (342)
                      +-+..
T Consensus        86 ih~A~   90 (342)
T PLN02214         86 FHTAS   90 (342)
T ss_pred             EEecC
Confidence            77764

>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases

Probab=91.52  E-value=1.1  Score=43.06  Aligned_cols=114  Identities=18%  Similarity=0.140  Sum_probs=60.7

Q ss_pred             CeEEEEec-CHHHHHHHHHHHh-cCCc-----EEEEEcCCchh-HHHHHHhhhhhhhhccCCC-CccccccCCHHHHhhc
Q 019387          166 QTVGVIGA-GRIGSAYARMMVE-GFKM-----NLIYYDLYQAT-RLEKFVTAYGQFLKANGEQ-PVTWKRASSMDEVLRE  236 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~-afg~-----~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~ll~~  236 (342)
                      .+|+|+|. |++|..+|-.|+. .+--     ++..+|..... ......    ..+...... ........+..+.+++
T Consensus         3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a----~Dl~~~~~~~~~~~~i~~~~~~~~~d   78 (322)
T cd01338           3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVA----MELEDCAFPLLAEIVITDDPNVAFKD   78 (322)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceee----hhhhhccccccCceEEecCcHHHhCC
Confidence            48999999 9999999987642 2322     78999985422 011100    001110000 0001112345677899


Q ss_pred             CCEEEEcCCCCc---ccc--------cccC--HHHHhcCC-CCcEEEEcCCCcccCHHHHHHH
Q 019387          237 ADVISLHPVLDK---TTY--------HLIN--KERLATMK-KEAILVNCSRGPVIDEVALVEH  285 (342)
Q Consensus       237 aDiV~l~~pl~~---~t~--------~li~--~~~l~~mk-~ga~lINvaRG~~vd~~aL~~a  285 (342)
                      ||+|+++.-...   +|+        .++.  ...+..-. +.+++|+++  +.+|.-..+-.
T Consensus        79 aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvs--NPvD~~t~~~~  139 (322)
T cd01338          79 ADWALLVGAKPRGPGMERADLLKANGKIFTAQGKALNDVASRDVKVLVVG--NPCNTNALIAM  139 (322)
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEec--CcHHHHHHHHH
Confidence            999998864321   121        1111  12333344 588999996  66666554443

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>PRK07370 enoyl-(acyl carrier protein) reductase; Validated

Probab=91.50  E-value=0.88  Score=41.72  Aligned_cols=35  Identities=23%  Similarity=0.112  Sum_probs=28.9

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcC
Q 019387          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDL  197 (342)
Q Consensus       162 ~L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~  197 (342)
                      .+.||++.|.|-   +.||+++|+.|+ ..|++|+...+
T Consensus         3 ~l~~k~~lItGas~~~GIG~aia~~la-~~G~~v~~~~~   40 (258)
T PRK07370          3 DLTGKKALVTGIANNRSIAWGIAQQLH-AAGAELGITYL   40 (258)
T ss_pred             ccCCcEEEEeCCCCCCchHHHHHHHHH-HCCCEEEEEec
Confidence            367999999997   489999999985 67999876543

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=91.44  E-value=0.73  Score=43.47  Aligned_cols=96  Identities=15%  Similarity=0.098  Sum_probs=58.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc-cCCHH--HH--hhcC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMD--EV--LREA  237 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~--~l--l~~a  237 (342)
                      .|.+|.|+|.|.+|+.+++. +++.|++ |.+.++.++.. +.. ..+       +.. ..+.. ..+..  ..  -...
T Consensus       159 ~g~~vlI~g~g~vg~~~~~l-a~~~G~~~v~~~~~~~~~~-~~~-~~~-------g~~-~~~~~~~~~~~~~~~~~~~~v  227 (334)
T cd08234         159 PGDSVLVFGAGPIGLLLAQL-LKLNGASRVTVAEPNEEKL-ELA-KKL-------GAT-ETVDPSREDPEAQKEDNPYGF  227 (334)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCcEEEEECCCHHHH-HHH-HHh-------CCe-EEecCCCCCHHHHHHhcCCCC
Confidence            47899999999999999998 5899998 78887765432 111 111       110 00000 01111  11  1457


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      |+++.+.+..     ......++.|+++..+|+++..+
T Consensus       228 d~v~~~~~~~-----~~~~~~~~~l~~~G~~v~~g~~~  260 (334)
T cd08234         228 DVVIEATGVP-----KTLEQAIEYARRGGTVLVFGVYA  260 (334)
T ss_pred             cEEEECCCCh-----HHHHHHHHHHhcCCEEEEEecCC
Confidence            9998876521     22345577888888999887554

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases

Probab=91.43  E-value=0.76  Score=43.95  Aligned_cols=99  Identities=23%  Similarity=0.278  Sum_probs=57.7

Q ss_pred             eEEEEec-CHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc--c-CCHHHHhhcCCEE
Q 019387          167 TVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR--A-SSMDEVLREADVI  240 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~l~~ll~~aDiV  240 (342)
                      +|+|||. |++|..+|-.|+ .-+  -++..+|.. ....+.      ..+.... .......  . +++.+.+++||+|
T Consensus         2 KI~IIGaaG~VG~~~a~~l~-~~~~~~elvLiDi~-~a~g~a------lDL~~~~-~~~~i~~~~~~~~~y~~~~daDiv   72 (310)
T cd01337           2 KVAVLGAAGGIGQPLSLLLK-LNPLVSELALYDIV-NTPGVA------ADLSHIN-TPAKVTGYLGPEELKKALKGADVV   72 (310)
T ss_pred             EEEEECCCCHHHHHHHHHHH-hCCCCcEEEEEecC-ccceee------hHhHhCC-CcceEEEecCCCchHHhcCCCCEE
Confidence            7999999 999999998863 334  479999987 211111      1111111 1111221  1 3456778999999


Q ss_pred             EEcCCCC--c-ccc-cccC---------HHHHhcCCCCcEEEEcCCC
Q 019387          241 SLHPVLD--K-TTY-HLIN---------KERLATMKKEAILVNCSRG  274 (342)
Q Consensus       241 ~l~~pl~--~-~t~-~li~---------~~~l~~mk~ga~lINvaRG  274 (342)
                      +++.-..  | +|| .++.         .+.+..-.|.+++||++-.
T Consensus        73 vitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNP  119 (310)
T cd01337          73 VIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNP  119 (310)
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCc
Confidence            8885432  2 222 1221         1244445688999999753

MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=91.42  E-value=5.5  Score=33.61  Aligned_cols=118  Identities=16%  Similarity=0.051  Sum_probs=77.7

Q ss_pred             CCceEEEEeCCCCc------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHh-CCCceEEEecCCC----CccHHHHHH
Q 019387           13 NGKYRVVSTKPMPG------TRWINLLIEQDCRVEICTQKKTILSVEDIIALI-GDKCDGVIGQLTE----DWGETLFAA   81 (342)
Q Consensus        13 ~~~~~vl~~~~~~~------~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~-~~~~d~vi~~~~~----~~~~e~l~~   81 (342)
                      +.+++|++.+.=-+      ...-.+|++.|++|....   .-.+++|+.+.. ..++|+|.+++..    ..-+++.+.
T Consensus        10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g---~~~tp~e~v~aA~~~dv~vIgvSsl~g~h~~l~~~lve~   86 (143)
T COG2185          10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLG---LFQTPEEAVRAAVEEDVDVIGVSSLDGGHLTLVPGLVEA   86 (143)
T ss_pred             CCCceEEEeccCccccccchHHHHHHHHhCCceEEecC---CcCCHHHHHHHHHhcCCCEEEEEeccchHHHHHHHHHHH
Confidence            57888888632221      223466889999997643   345778886644 5568988876532    223566778


Q ss_pred             hhccCCceEEEcccc-CCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHH
Q 019387           82 LSRAGGKAFSNMAVG-YNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLA  133 (342)
Q Consensus        82 l~~l~~k~i~~~~~G-~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~  133 (342)
                      |...|...|.....| +--=|++..++.|+.=.-.|+.+...+++..+..+-.
T Consensus        87 lre~G~~~i~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l~~  139 (143)
T COG2185          87 LREAGVEDILVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRLGA  139 (143)
T ss_pred             HHHhCCcceEEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHHHh
Confidence            888887666633333 3333677899999998889998877777766655443

>PRK13529 malate dehydrogenase; Provisional

Probab=91.33  E-value=3  Score=42.86  Aligned_cols=176  Identities=19%  Similarity=0.182  Sum_probs=110.2

Q ss_pred             hCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHh
Q 019387          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~  186 (342)
                      +..|.+.|+--.   .+|-.+++-+++..|-                     .|..|...++.|+|.|.-|-.+|+.|..
T Consensus       261 r~~i~~FnDDiQ---GTaaV~LAgll~A~r~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~  316 (563)
T PRK13529        261 RDEICTFNDDIQ---GTGAVTLAGLLAALKI---------------------TGEPLSDQRIVFLGAGSAGCGIADQIVA  316 (563)
T ss_pred             ccCCCeeccccc---hHHHHHHHHHHHHHHH---------------------hCCChhhcEEEEECCCHHHHHHHHHHHH
Confidence            446888887654   3466678888887762                     2456889999999999999999998753


Q ss_pred             c---CCc-------EEEEEcCCc---hhH--HHHHHhhhhhhhhccCCCCccc---cccCCHHHHhhcC--CEEEEcCCC
Q 019387          187 G---FKM-------NLIYYDLYQ---ATR--LEKFVTAYGQFLKANGEQPVTW---KRASSMDEVLREA--DVISLHPVL  246 (342)
Q Consensus       187 a---fg~-------~V~~~d~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~ll~~a--DiV~l~~pl  246 (342)
                      +   .|.       +++.+|...   +.+  +..+...|.   +. ......+   ....+|.|+++..  |+++=+-  
T Consensus       317 ~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~~l~~~k~~fa---~~-~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S--  390 (563)
T PRK13529        317 AMVREGLSEEEARKRFFMVDRQGLLTDDMPDLLDFQKPYA---RK-REELADWDTEGDVISLLEVVRNVKPTVLIGVS--  390 (563)
T ss_pred             HHHHcCCChhHhcCeEEEEcCCCeEeCCCCcchHHHHHHh---hh-cccccccccccCCCCHHHHHhccCCCEEEEec--
Confidence            2   466       788888763   111  223333332   11 1100001   1235899999998  9987542  


Q ss_pred             CcccccccCHHHHhcCCC---CcEEEEcCCCccc---CHHHHHHHHHcCC-ceEEEEe---cC----CCCC---CCcccc
Q 019387          247 DKTTYHLINKERLATMKK---EAILVNCSRGPVI---DEVALVEHLKQNP-MFRVGLD---VF----EVTE---LGFSSF  309 (342)
Q Consensus       247 ~~~t~~li~~~~l~~mk~---ga~lINvaRG~~v---d~~aL~~aL~~g~-i~~aaLD---V~----~~EP---~~~~~t  309 (342)
                        ..-+.|+++.++.|.+   ..++.=.|.-..-   ..++.+++ .+|+ |.+.+.-   |.    ...|   .|.++.
T Consensus       391 --~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~aE~tpe~a~~~-T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iF  467 (563)
T PRK13529        391 --GQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLIAW-TDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIF  467 (563)
T ss_pred             --CCCCCCCHHHHHHHHhcCCCCEEEECCCcCCCcccCHHHHHHh-hcCCEEEEECCCCCCeeeCCeEeccCcCcceeec
Confidence              2248999999999987   7888888776653   33333333 2354 5544542   11    1233   678888


Q ss_pred             cccccc
Q 019387          310 KHISTQ  315 (342)
Q Consensus       310 Phia~~  315 (342)
                      |-++-.
T Consensus       468 PGiglG  473 (563)
T PRK13529        468 PGLGLG  473 (563)
T ss_pred             ccchhh
Confidence            877544

>PLN03129 NADP-dependent malic enzyme; Provisional

Probab=91.28  E-value=3.4  Score=42.68  Aligned_cols=171  Identities=19%  Similarity=0.149  Sum_probs=108.1

Q ss_pred             hCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHh
Q 019387          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~  186 (342)
                      +..|.+.|+--.   .+|-.+++-+++..|-.                     |..|...+|.|+|.|..|-.+|+.|..
T Consensus       287 r~~i~~FnDDiQ---GTaaV~lAgll~A~r~~---------------------g~~l~d~riv~~GAGsAgigia~ll~~  342 (581)
T PLN03129        287 RTTHLCFNDDIQ---GTAAVALAGLLAALRAT---------------------GGDLADQRILFAGAGEAGTGIAELIAL  342 (581)
T ss_pred             ccCCCEeccccc---hHHHHHHHHHHHHHHHh---------------------CCchhhceEEEECCCHHHHHHHHHHHH
Confidence            446888776654   44666788888877622                     357889999999999999999998754


Q ss_pred             c----CCc-------EEEEEcCCch---hH---HHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEEEEcCCCC
Q 019387          187 G----FKM-------NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISLHPVLD  247 (342)
Q Consensus       187 a----fg~-------~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV~l~~pl~  247 (342)
                      +    .|.       +++.+|...-   .+   ...+...|.   +. .      ....+|.|+++.  .|+++=+--  
T Consensus       343 ~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k~~fa---~~-~------~~~~~L~e~v~~vkptvLIG~S~--  410 (581)
T PLN03129        343 AMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFKKPFA---HD-H------EPGASLLEAVKAIKPTVLIGLSG--  410 (581)
T ss_pred             HHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHHHHHH---hh-c------ccCCCHHHHHhccCCCEEEEecC--
Confidence            2    355       7888887641   11   222222221   11 1      123699999998  899875531  


Q ss_pred             cccccccCHHHHhcCC---CCcEEEEcCCCcc---cCHHHHHHHHHcCC-ceEEEE-------ecCCCCC---CCccccc
Q 019387          248 KTTYHLINKERLATMK---KEAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGL-------DVFEVTE---LGFSSFK  310 (342)
Q Consensus       248 ~~t~~li~~~~l~~mk---~ga~lINvaRG~~---vd~~aL~~aL~~g~-i~~aaL-------DV~~~EP---~~~~~tP  310 (342)
                        .-+.|+++.++.|.   +..++.=.|.-.-   +..++.+++ .+|+ |.+.+.       +--...|   .|.++.|
T Consensus       411 --~~g~Ft~evi~~Ma~~~~rPIIFaLSNPt~~~E~~pe~a~~~-T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFP  487 (581)
T PLN03129        411 --VGGTFTKEVLEAMASLNERPIIFALSNPTSKAECTAEEAYTW-TGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFP  487 (581)
T ss_pred             --CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCcCcCHHHHHHh-hcCCEEEEeCCCCCCeeeCCeeecCccccceeecc
Confidence              23899999999995   7788877765542   233444444 3355 444432       1112233   6788888


Q ss_pred             cccccc
Q 019387          311 HISTQD  316 (342)
Q Consensus       311 hia~~~  316 (342)
                      -|+-..
T Consensus       488 GiglGa  493 (581)
T PLN03129        488 GIGLGA  493 (581)
T ss_pred             chhhHH
Confidence            775443

>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1

Probab=91.27  E-value=0.88  Score=38.02  Aligned_cols=66  Identities=23%  Similarity=0.271  Sum_probs=49.2

Q ss_pred             ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 019387          226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV  301 (342)
Q Consensus       226 ~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~  301 (342)
                      -..+-++++++||+|+-.-|.+        .+.++.|++|.++|-...-.  ....+++.|.+.++...++|-...
T Consensus        54 I~~~~~ev~~~adiIl~v~~p~--------~~e~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr  119 (136)
T PF05222_consen   54 IVSRAEEVYSDADIILKVKPPS--------EEELALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIPR  119 (136)
T ss_dssp             EESSHHHHHTTSSEEEESS-----------GGGGGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred             EecCchhhcccCCEEEEECCCC--------HHHHhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence            3456679999999998766532        67899999999999876654  588899999999999999886554

4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=91.24  E-value=1.2  Score=42.71  Aligned_cols=93  Identities=15%  Similarity=0.177  Sum_probs=56.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhc-CC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEG-FK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~a-fg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .|.+|.|+|.|.||...++.+ +. +| .+|++.++++++. +... ..       +..   . ...++.+-. ..|+|+
T Consensus       163 ~g~~VlV~G~G~vGl~~~~~a-~~~~g~~~vi~~~~~~~k~-~~a~-~~-------~~~---~-~~~~~~~~~-g~d~vi  227 (341)
T cd08237         163 DRNVIGVWGDGNLGYITALLL-KQIYPESKLVVFGKHQEKL-DLFS-FA-------DET---Y-LIDDIPEDL-AVDHAF  227 (341)
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHhcCCCcEEEEeCcHhHH-HHHh-hc-------Cce---e-ehhhhhhcc-CCcEEE
Confidence            488999999999999988875 44 54 6899999876432 2111 01       100   0 001111111 479999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      -+.... .+...+ ...++.+++|..++.++-
T Consensus       228 D~~G~~-~~~~~~-~~~~~~l~~~G~iv~~G~  257 (341)
T cd08237         228 ECVGGR-GSQSAI-NQIIDYIRPQGTIGLMGV  257 (341)
T ss_pred             ECCCCC-ccHHHH-HHHHHhCcCCcEEEEEee
Confidence            887631 111122 346788999999888763

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=91.19  E-value=1.1  Score=43.43  Aligned_cols=37  Identities=32%  Similarity=0.374  Sum_probs=32.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~  201 (342)
                      .|.+|.|.|.|.+|..+++. ++.+|+ +|++.++..+.
T Consensus       187 ~g~~VlV~G~g~vG~~a~q~-ak~~G~~~vi~~~~~~~~  224 (369)
T cd08301         187 KGSTVAIFGLGAVGLAVAEG-ARIRGASRIIGVDLNPSK  224 (369)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence            48899999999999999998 589999 79999887654

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]

Probab=91.16  E-value=0.65  Score=44.01  Aligned_cols=73  Identities=19%  Similarity=0.301  Sum_probs=49.4

Q ss_pred             cCCCeEEEEe---cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          163 LKGQTVGVIG---AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       163 L~gktvgIvG---~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      +.|++|+|+|   +|+..++.++.| +.||++|..+.|..-...+...+..    ...+   ..+......++++.++|+
T Consensus       156 ~~gl~iaivGDlkhsRva~S~~~~L-~~~ga~v~lvsP~~L~~p~~i~~~l----~~~~---~~~~~~~~~e~~i~~~DV  227 (316)
T COG0540         156 LDGLKIAIVGDLKHSRVAHSNIQAL-KRFGAEVYLVSPETLLPPEYILEEL----EEKG---GVVVEHDSDEEVIEEADV  227 (316)
T ss_pred             cCCcEEEEEccccchHHHHHHHHHH-HHcCCEEEEECchHhCCchhHHHHH----hhcC---ceEEEecchhhhhccCCE
Confidence            7899999999   899999999998 7999999999876432211111111    0111   112234566669999999


Q ss_pred             EEEc
Q 019387          240 ISLH  243 (342)
Q Consensus       240 V~l~  243 (342)
                      +.+.
T Consensus       228 l~~l  231 (316)
T COG0540         228 LYML  231 (316)
T ss_pred             EEee
Confidence            9543

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=91.15  E-value=1  Score=43.01  Aligned_cols=94  Identities=18%  Similarity=0.222  Sum_probs=56.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCc-ccccc--CCHHHHhh--cC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRA--SSMDEVLR--EA  237 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~l~~ll~--~a  237 (342)
                      .|++|.|.|.|.+|+.+++. ++.+|++ |++.+++.+.. +. ...++       .... .....  ..+.++..  ..
T Consensus       160 ~g~~vlV~G~g~vG~~~~~~-a~~~G~~~v~~~~~~~~~~-~~-~~~~G-------a~~~i~~~~~~~~~~~~~~~~~~~  229 (347)
T PRK10309        160 EGKNVIIIGAGTIGLLAIQC-AVALGAKSVTAIDINSEKL-AL-AKSLG-------AMQTFNSREMSAPQIQSVLRELRF  229 (347)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEECCCHHHH-HH-HHHcC-------CceEecCcccCHHHHHHHhcCCCC
Confidence            47899999999999999998 5899997 67787766432 11 11111       1000 00000  11222222  34


Q ss_pred             C-EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          238 D-VISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       238 D-iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      | +++-|... +.   .+ ...++.+++|..++.++
T Consensus       230 d~~v~d~~G~-~~---~~-~~~~~~l~~~G~iv~~G  260 (347)
T PRK10309        230 DQLILETAGV-PQ---TV-ELAIEIAGPRAQLALVG  260 (347)
T ss_pred             CeEEEECCCC-HH---HH-HHHHHHhhcCCEEEEEc
Confidence            6 77766652 11   22 44678889999999886

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=91.14  E-value=1  Score=42.81  Aligned_cols=96  Identities=15%  Similarity=0.159  Sum_probs=58.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHH----HHhh-cC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMD----EVLR-EA  237 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~----~ll~-~a  237 (342)
                      .|++|.|.|.|.+|+.+++. ++++|++|++.+...+....  ...+       +.... ......++.    .+.. ..
T Consensus       165 ~~~~vlV~g~g~vg~~~~~~-a~~~G~~vi~~~~~~~~~~~--~~~~-------g~~~~i~~~~~~~~~~~~~~~~~~~~  234 (345)
T cd08260         165 PGEWVAVHGCGGVGLSAVMI-ASALGARVIAVDIDDDKLEL--AREL-------GAVATVNASEVEDVAAAVRDLTGGGA  234 (345)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCeEEEEeCCHHHHHH--HHHh-------CCCEEEccccchhHHHHHHHHhCCCC
Confidence            47899999999999999998 58999999988776544211  1111       11000 000001222    2222 47


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      |+++-+... ..    .-...++.++++..+++++..
T Consensus       235 d~vi~~~g~-~~----~~~~~~~~l~~~g~~i~~g~~  266 (345)
T cd08260         235 HVSVDALGI-PE----TCRNSVASLRKRGRHVQVGLT  266 (345)
T ss_pred             CEEEEcCCC-HH----HHHHHHHHhhcCCEEEEeCCc
Confidence            888877642 11    123467788888899988753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>PRK08374 homoserine dehydrogenase; Provisional

Probab=90.99  E-value=0.62  Score=45.02  Aligned_cols=128  Identities=17%  Similarity=0.266  Sum_probs=64.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHh-------cCC--cEEEEE-cCCchh------HHHHHHhhhhhhhhccCCCCcccc----
Q 019387          166 QTVGVIGAGRIGSAYARMMVE-------GFK--MNLIYY-DLYQAT------RLEKFVTAYGQFLKANGEQPVTWK----  225 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~-------afg--~~V~~~-d~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~----  225 (342)
                      -+|+|+|+|++|+.+++.|.+       .+|  .+|.+. |++...      ..++..+    .....+. ...+.    
T Consensus         3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~----~~~~~~~-~~~~~~~~~   77 (336)
T PRK08374          3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKE----VKENFGK-LSNWGNDYE   77 (336)
T ss_pred             eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHH----hhhccCc-hhhcccccc
Confidence            489999999999999987643       145  676644 432110      0011000    0000000 00010    


Q ss_pred             -ccCCHHHHh--hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc-eEEEEecCC
Q 019387          226 -RASSMDEVL--READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM-FRVGLDVFE  300 (342)
Q Consensus       226 -~~~~l~~ll--~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v-d~~aL~~aL~~g~i-~~aaLDV~~  300 (342)
                       ...++++++  ..+|+|+-+.+.  +   ....-..+.++.|.-+|-...|.+- ..++|.+.-++... ..+.-.|.-
T Consensus        78 ~~~~~~~ell~~~~~DVvVd~t~~--~---~a~~~~~~al~~G~~VVtanK~~la~~~~el~~la~~~~~~~~~ea~v~~  152 (336)
T PRK08374         78 VYNFSPEEIVEEIDADIVVDVTND--K---NAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDLANERNLPYLFEATVMA  152 (336)
T ss_pred             ccCCCHHHHHhcCCCCEEEECCCc--H---HHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHHHHHcCCeEEEeccccc
Confidence             012677887  479999988752  2   1222334456677777766665432 44566655544322 222333444


Q ss_pred             CCC
Q 019387          301 VTE  303 (342)
Q Consensus       301 ~EP  303 (342)
                      .-|
T Consensus       153 GiP  155 (336)
T PRK08374        153 GTP  155 (336)
T ss_pred             cCC
Confidence            444

>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.74  E-value=0.81  Score=45.81  Aligned_cols=117  Identities=20%  Similarity=0.221  Sum_probs=68.2

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-ccc-ccCCHHHHhhcCCEEEEcC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWK-RASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~ll~~aDiV~l~~  244 (342)
                      +|.|+|+|..|.+.|+.| ...|.+|.++|.............    +...+.... +.. ....+.+.+.+.|.|+...
T Consensus         2 ~v~viG~G~sG~s~a~~l-~~~G~~V~~~D~~~~~~~~~~~~~----l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~   76 (459)
T PRK02705          2 IAHVIGLGRSGIAAARLL-KAQGWEVVVSDRNDSPELLERQQE----LEQEGITVKLGKPLELESFQPWLDQPDLVVVSP   76 (459)
T ss_pred             eEEEEccCHHHHHHHHHH-HHCCCEEEEECCCCchhhHHHHHH----HHHcCCEEEECCccchhhhhHHhhcCCEEEECC
Confidence            589999999999999987 688999999998765432211000    111111100 000 0012335678899988754


Q ss_pred             CCCcccc----------cccCHHHH--hcCC-CCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          245 VLDKTTY----------HLINKERL--ATMK-KEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       245 pl~~~t~----------~li~~~~l--~~mk-~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ...+.+.          .++....+  ..++ ...+-|--+.|..-...-|.+.|+.
T Consensus        77 gi~~~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~  133 (459)
T PRK02705         77 GIPWDHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA  133 (459)
T ss_pred             CCCCCCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence            4433221          22333322  3333 2356666779998888877777765

>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]

Probab=90.71  E-value=0.69  Score=44.17  Aligned_cols=34  Identities=35%  Similarity=0.675  Sum_probs=28.3

Q ss_pred             CeEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCc
Q 019387          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQ  199 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~  199 (342)
                      ++|+|+|.|+||+++|-+|. +.++-++..||...
T Consensus         1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~~   35 (313)
T COG0039           1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDINE   35 (313)
T ss_pred             CeEEEECCChHHHHHHHHHhcccccceEEEEEccc
Confidence            47999999999999998764 35666899999883

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=90.64  E-value=1.6  Score=42.97  Aligned_cols=95  Identities=20%  Similarity=0.387  Sum_probs=64.8

Q ss_pred             ccccCCCeEEEEec---CHH-------HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC
Q 019387          160 GNLLKGQTVGVIGA---GRI-------GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       160 ~~~L~gktvgIvG~---G~I-------G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      ++.+.|.+|.++|+   |++       .-.+.+.| +..|.+|.+|||+.+....+. .         +   ... ....
T Consensus       317 ~k~~~~skIlvlGlayK~dvdD~ReSPa~~ii~~l-~~~g~~v~~~DP~v~~~~~~~-~---------~---~~~-~~~~  381 (436)
T COG0677         317 GKPLSGSKILVLGLAYKGDVDDLRESPALDIIELL-EEWGGEVLVYDPYVKELPTRE-D---------G---EGV-TLAI  381 (436)
T ss_pred             CCCCcCceEEEEEeeecCCCcccccCchHHHHHHH-HHhCCeEEEECCCCCcchhhh-h---------c---ccc-chhh
Confidence            56789999999998   333       35677777 688999999999986421110 0         0   000 1368


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       230 l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      +++.++++|+|++...  -+...-++.+.+.++  ..++|++ |+
T Consensus       382 ~e~al~~~D~vVi~tD--H~~fk~id~~~i~~~--~~vivDt-rn  421 (436)
T COG0677         382 LEEALKDADAVVIATD--HSEFKEIDYEAIGKE--AKVIVDT-RN  421 (436)
T ss_pred             HHHHhccCCEEEEEec--cHHhhcCCHHHhccC--CcEEEEC-cc
Confidence            8999999999998864  122235788887776  4577776 54

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=90.62  E-value=1.7  Score=40.69  Aligned_cols=94  Identities=22%  Similarity=0.147  Sum_probs=57.7

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC----HHHHhh--c
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDEVLR--E  236 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~ll~--~  236 (342)
                      .|.+|.|.|. |.+|+.+++. ++++|++|++.....+.+...  ..+       +....-.....+    +.++..  .
T Consensus       139 ~g~~vlI~g~~g~ig~~~~~~-a~~~G~~v~~~~~~~~~~~~~--~~~-------g~~~~~~~~~~~~~~~i~~~~~~~~  208 (324)
T cd08292         139 PGQWLIQNAAGGAVGKLVAML-AAARGINVINLVRRDAGVAEL--RAL-------GIGPVVSTEQPGWQDKVREAAGGAP  208 (324)
T ss_pred             CCCEEEEcccccHHHHHHHHH-HHHCCCeEEEEecCHHHHHHH--Hhc-------CCCEEEcCCCchHHHHHHHHhCCCC
Confidence            4789999986 9999999998 589999998876655432111  111       111000000112    223332  4


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+|+-|+.. +     .....++.++++..+|.++.
T Consensus       209 ~d~v~d~~g~-~-----~~~~~~~~l~~~g~~v~~g~  239 (324)
T cd08292         209 ISVALDSVGG-K-----LAGELLSLLGEGGTLVSFGS  239 (324)
T ss_pred             CcEEEECCCC-h-----hHHHHHHhhcCCcEEEEEec
Confidence            8888877652 1     12566888999999998863

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=90.61  E-value=0.71  Score=44.66  Aligned_cols=95  Identities=18%  Similarity=0.145  Sum_probs=56.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-ccccc-CCHHH----Hh-h
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRA-SSMDE----VL-R  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~l~~----ll-~  235 (342)
                      .|.+|.|.|.|.+|..+++. ++.+|+ +|++.++........  ..+       +.... ..... .++.+    +. .
T Consensus       184 ~g~~vlV~G~g~vG~~~~~~-a~~~G~~~Vi~~~~~~~~~~~~--~~~-------ga~~~i~~~~~~~~~~~~~~~~~~~  253 (365)
T cd08277         184 PGSTVAVFGLGAVGLSAIMG-AKIAGASRIIGVDINEDKFEKA--KEF-------GATDFINPKDSDKPVSEVIREMTGG  253 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHHHHHH--HHc-------CCCcEeccccccchHHHHHHHHhCC
Confidence            58899999999999999997 589999 688888866432111  111       11000 00000 11122    11 2


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCC-cEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~g-a~lINvaR  273 (342)
                      ..|+|+-|.... .    .-...+..++++ ..+|.++.
T Consensus       254 g~d~vid~~g~~-~----~~~~~~~~l~~~~G~~v~~g~  287 (365)
T cd08277         254 GVDYSFECTGNA-D----LMNEALESTKLGWGVSVVVGV  287 (365)
T ss_pred             CCCEEEECCCCh-H----HHHHHHHhcccCCCEEEEEcC
Confidence            478888776421 1    224467788775 78888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=90.53  E-value=0.38  Score=45.78  Aligned_cols=122  Identities=15%  Similarity=0.089  Sum_probs=68.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-----hcC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-----~~a  237 (342)
                      .|+|+.|.|+|.+|-+++.- +++.|+ ++++.|.++++...+.  .+   ...+=..+.  +...++.|.+     ...
T Consensus       192 ~GstvAVfGLG~VGLav~~G-aka~GAsrIIgvDiN~~Kf~~ak--~f---GaTe~iNp~--d~~~~i~evi~EmTdgGv  263 (375)
T KOG0022|consen  192 PGSTVAVFGLGGVGLAVAMG-AKAAGASRIIGVDINPDKFEKAK--EF---GATEFINPK--DLKKPIQEVIIEMTDGGV  263 (375)
T ss_pred             CCCEEEEEecchHHHHHHHh-HHhcCcccEEEEecCHHHHHHHH--hc---CcceecChh--hccccHHHHHHHHhcCCc
Confidence            58999999999999999998 589998 7999999986532221  11   111111111  0112344444     236


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCC---cEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKE---AILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~g---a~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV  298 (342)
                      |+-+-|+-. .++.    .+.|...++|   +++|-++-.+..-.-.-.+.+.-..+.|.+.--
T Consensus       264 DysfEc~G~-~~~m----~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG  322 (375)
T KOG0022|consen  264 DYSFECIGN-VSTM----RAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGG  322 (375)
T ss_pred             eEEEEecCC-HHHH----HHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEeccc
Confidence            666666542 2221    3456667766   566666543332222233444444455554433

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=90.52  E-value=1.1  Score=44.16  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=24.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHh-cC-CcEEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVE-GF-KMNLIYYDL  197 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~-af-g~~V~~~d~  197 (342)
                      .+|||.|+|+||+.+.|.|.+ .| ..+|.+.+.
T Consensus        61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd   94 (395)
T PLN03096         61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAIND   94 (395)
T ss_pred             cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcC
Confidence            589999999999999998642 23 457776653

>PRK07576 short chain dehydrogenase; Provisional

Probab=90.49  E-value=0.73  Score=42.31  Aligned_cols=39  Identities=21%  Similarity=0.188  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .+.||++.|.|- |.||..+++.| ...|++|+..+++++.
T Consensus         6 ~~~~k~ilItGasggIG~~la~~l-~~~G~~V~~~~r~~~~   45 (264)
T PRK07576          6 DFAGKNVVVVGGTSGINLGIAQAF-ARAGANVAVASRSQEK   45 (264)
T ss_pred             cCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            578999999988 89999999998 4789999999987643

>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]

Probab=90.45  E-value=0.67  Score=44.22  Aligned_cols=117  Identities=17%  Similarity=0.164  Sum_probs=60.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      .+|.|+|.|.||.-++-+|+ ..|..|+..-+.+.  .+++... +..+...............-.+.+..+|+|++++-
T Consensus         1 mkI~IlGaGAvG~l~g~~L~-~~g~~V~~~~R~~~--~~~l~~~-GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK   76 (307)
T COG1893           1 MKILILGAGAIGSLLGARLA-KAGHDVTLLVRSRR--LEALKKK-GLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK   76 (307)
T ss_pred             CeEEEECCcHHHHHHHHHHH-hCCCeEEEEecHHH--HHHHHhC-CeEEecCCCccccccccccChhhcCCCCEEEEEec
Confidence            37999999999999999985 56777777766543  2222221 11121111100111112233455668999999874


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      . -++...+ +......++.+.++-.--| +=.++.+-+.....
T Consensus        77 a-~q~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~  117 (307)
T COG1893          77 A-YQLEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKE  117 (307)
T ss_pred             c-ccHHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcc
Confidence            2 2333322 2234445566555433222 22233455554444

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=90.41  E-value=1.4  Score=41.59  Aligned_cols=95  Identities=18%  Similarity=0.226  Sum_probs=57.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .|.+|.|+|.|.+|+.+++. ++.+|.+|++.++..+.. +. ...+       +.... ...........-...|+++.
T Consensus       162 ~~~~vlI~g~g~iG~~~~~~-a~~~G~~v~~~~~~~~~~-~~-~~~~-------g~~~~~~~~~~~~~~~~~~~~d~vi~  231 (330)
T cd08245         162 PGERVAVLGIGGLGHLAVQY-ARAMGFETVAITRSPDKR-EL-ARKL-------GADEVVDSGAELDEQAAAGGADVILV  231 (330)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCHHHH-HH-HHHh-------CCcEEeccCCcchHHhccCCCCEEEE
Confidence            46899999999999999888 489999999988776542 11 1111       11000 00000111111235788887


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+... .    .....+..|+++..+|+++.
T Consensus       232 ~~~~~-~----~~~~~~~~l~~~G~~i~~~~  257 (330)
T cd08245         232 TVVSG-A----AAEAALGGLRRGGRIVLVGL  257 (330)
T ss_pred             CCCcH-H----HHHHHHHhcccCCEEEEECC
Confidence            76421 1    23556788988888888763

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>PRK06114 short chain dehydrogenase; Provisional

Probab=90.39  E-value=0.73  Score=41.89  Aligned_cols=38  Identities=26%  Similarity=0.287  Sum_probs=31.9

Q ss_pred             ccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .+.||++.|.| -|.||+.+|+.| ...|++|++.++..+
T Consensus         5 ~~~~k~~lVtG~s~gIG~~ia~~l-~~~G~~v~~~~r~~~   43 (254)
T PRK06114          5 DLDGQVAFVTGAGSGIGQRIAIGL-AQAGADVALFDLRTD   43 (254)
T ss_pred             CCCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCcc
Confidence            47899999998 559999999998 478999999887654

>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional

Probab=90.38  E-value=1.9  Score=46.66  Aligned_cols=112  Identities=23%  Similarity=0.315  Sum_probs=69.9

Q ss_pred             CeEEEEecCHHHHHH-HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAY-ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~v-A~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      +++.|+|+|.+|.+. |+.| +..|.+|.++|.......+..        ...+..   +.. ..-.+.+.++|+|+...
T Consensus         5 ~~i~viG~G~sG~salA~~L-~~~G~~V~~sD~~~~~~~~~L--------~~~gi~---~~~-g~~~~~~~~~d~vV~Sp   71 (809)
T PRK14573          5 LFYHFIGIGGIGMSALAHIL-LDRGYSVSGSDLSEGKTVEKL--------KAKGAR---FFL-GHQEEHVPEDAVVVYSS   71 (809)
T ss_pred             ceEEEEEecHHhHHHHHHHH-HHCCCeEEEECCCCChHHHHH--------HHCCCE---EeC-CCCHHHcCCCCEEEECC
Confidence            369999999999998 9987 689999999997654332221        111111   111 11225567899998774


Q ss_pred             CCCccc----------ccccCHHHH-hc-CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          245 VLDKTT----------YHLINKERL-AT-MKK-EAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       245 pl~~~t----------~~li~~~~l-~~-mk~-ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      .-.+.+          ..++++..| .. ++. ..+-|-=+.|..-...-+...|++..
T Consensus        72 gI~~~~p~~~~a~~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~~g  130 (809)
T PRK14573         72 SISKDNVEYLSAKSRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQEAK  130 (809)
T ss_pred             CcCCCCHHHHHHHHCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHhCC
Confidence            433332          233444333 22 332 35677778999888888888887643

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=90.37  E-value=1.5  Score=40.69  Aligned_cols=96  Identities=22%  Similarity=0.191  Sum_probs=58.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCH----HHHh--hc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVL--RE  236 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~ll--~~  236 (342)
                      .|.+|.|.|-|.+|+.+++. +++.|++ |++.++.++.. + ....+       +....-.....++    .++.  ..
T Consensus       129 ~~~~vlI~g~g~vg~~~~~l-a~~~g~~~v~~~~~~~~~~-~-~~~~~-------g~~~~~~~~~~~~~~~l~~~~~~~~  198 (312)
T cd08269         129 AGKTVAVIGAGFIGLLFLQL-AAAAGARRVIAIDRRPARL-A-LAREL-------GATEVVTDDSEAIVERVRELTGGAG  198 (312)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCcEEEEECCCHHHH-H-HHHHh-------CCceEecCCCcCHHHHHHHHcCCCC
Confidence            47899999999999999998 5899999 88877665432 1 11111       1100000011122    2222  23


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      .|+++-|...     .......++.|+++..+++++..
T Consensus       199 vd~vld~~g~-----~~~~~~~~~~l~~~g~~~~~g~~  231 (312)
T cd08269         199 ADVVIEAVGH-----QWPLDLAGELVAERGRLVIFGYH  231 (312)
T ss_pred             CCEEEECCCC-----HHHHHHHHHHhccCCEEEEEccC
Confidence            7888877542     11234567888889999988643

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PRK06172 short chain dehydrogenase; Provisional

Probab=90.35  E-value=0.68  Score=41.93  Aligned_cols=39  Identities=23%  Similarity=0.195  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .+.||++.|.|- |.||+.+|+.|+ .-|++|+..+++.+.
T Consensus         4 ~l~~k~ilItGas~~iG~~ia~~l~-~~G~~v~~~~r~~~~   43 (253)
T PRK06172          4 TFSGKVALVTGGAAGIGRATALAFA-REGAKVVVADRDAAG   43 (253)
T ss_pred             CCCCCEEEEeCCCchHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            467899999996 799999999985 679999999987643

>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=90.32  E-value=2.6  Score=42.01  Aligned_cols=113  Identities=19%  Similarity=0.194  Sum_probs=66.7

Q ss_pred             CC-CeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCCHHHHhhcCCEE
Q 019387          164 KG-QTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLREADVI  240 (342)
Q Consensus       164 ~g-ktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~~aDiV  240 (342)
                      .| ++|.|+|+|.+|.+.++.|.+.-| .+|.++|..........       +. .+   ..+. ...+. +.+.++|+|
T Consensus         5 ~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~-------l~-~g---~~~~~g~~~~-~~~~~~d~v   72 (438)
T PRK04663          5 QGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQ-------LP-ED---VELHSGGWNL-EWLLEADLV   72 (438)
T ss_pred             cCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHH-------hh-cC---CEEEeCCCCh-HHhccCCEE
Confidence            45 789999999999999998854444 89999997653211110       00 11   1110 11122 335779988


Q ss_pred             EEcCCCCccc----------ccccCHHHH--hcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          241 SLHPVLDKTT----------YHLINKERL--ATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       241 ~l~~pl~~~t----------~~li~~~~l--~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      +...--.+.+          ..++++..+  ..++...+-|-=+-|..-...-|...|+.
T Consensus        73 V~SpgI~~~~p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  132 (438)
T PRK04663         73 VTNPGIALATPEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA  132 (438)
T ss_pred             EECCCCCCCCHHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            7764332221          123433333  33454566677778988888877777765

>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional

Probab=90.30  E-value=0.73  Score=41.39  Aligned_cols=37  Identities=27%  Similarity=0.363  Sum_probs=32.6

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      +.|+++.|.|- |.||+.+|+.| ...|.+|+..++...
T Consensus         3 ~~~~~~lItG~~g~iG~~~a~~l-~~~G~~vi~~~r~~~   40 (253)
T PRK08217          3 LKDKVIVITGGAQGLGRAMAEYL-AQKGAKLALIDLNQE   40 (253)
T ss_pred             CCCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHH
Confidence            67999999998 99999999998 467999999988764

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=90.29  E-value=1.3  Score=42.90  Aligned_cols=37  Identities=32%  Similarity=0.416  Sum_probs=32.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~  201 (342)
                      .|.+|.|.|.|.||+..++. ++.+|+ +|++.++.++.
T Consensus       185 ~g~~VlV~G~G~iG~~a~q~-Ak~~G~~~Vi~~~~~~~~  222 (368)
T TIGR02818       185 EGDTVAVFGLGGIGLSVIQG-ARMAKASRIIAIDINPAK  222 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHH
Confidence            48899999999999999998 589999 79998887654

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed

Probab=90.20  E-value=1.3  Score=43.01  Aligned_cols=32  Identities=16%  Similarity=0.422  Sum_probs=25.2

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcC
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDL  197 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~  197 (342)
                      .+|+|+| .|.+|+.+++.|...-.+++.++..
T Consensus         4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~   36 (349)
T PRK08664          4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAA   36 (349)
T ss_pred             cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEc
Confidence            5899998 9999999999985333558887733

>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional

Probab=90.19  E-value=0.81  Score=47.28  Aligned_cols=81  Identities=19%  Similarity=0.205  Sum_probs=48.9

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh-hhccC------CC--CccccccCCHHHH
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF-LKANG------EQ--PVTWKRASSMDEV  233 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~------~~--~~~~~~~~~l~~l  233 (342)
                      .|+++.|.|- |.||+.+++.|+ ..|.+|.+++++.... ......+... +...+      ..  ...+....++.+.
T Consensus        79 ~gKvVLVTGATGgIG~aLAr~LL-k~G~~Vval~Rn~ekl-~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~a  156 (576)
T PLN03209         79 DEDLAFVAGATGKVGSRTVRELL-KLGFRVRAGVRSAQRA-ESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPA  156 (576)
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHH
Confidence            5789999996 999999999984 6799999998876532 1111110000 00000      00  0111122345667


Q ss_pred             hhcCCEEEEcCCC
Q 019387          234 LREADVISLHPVL  246 (342)
Q Consensus       234 l~~aDiV~l~~pl  246 (342)
                      +.++|+|+.+...
T Consensus       157 LggiDiVVn~AG~  169 (576)
T PLN03209        157 LGNASVVICCIGA  169 (576)
T ss_pred             hcCCCEEEEcccc
Confidence            8899999888653

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=90.12  E-value=0.92  Score=43.84  Aligned_cols=31  Identities=29%  Similarity=0.492  Sum_probs=23.2

Q ss_pred             eEEEEecCHHHHHHHHHHHh-cC--CcEEEEEcC
Q 019387          167 TVGVIGAGRIGSAYARMMVE-GF--KMNLIYYDL  197 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~-af--g~~V~~~d~  197 (342)
                      +|||.|+|+||+.+.|.|.. .|  +.++++.+.
T Consensus         3 ~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind   36 (336)
T PRK13535          3 RVAINGFGRIGRNVLRALYESGRRAEITVVAINE   36 (336)
T ss_pred             EEEEECcCHHHHHHHHHHHhcCCCCceEEEEecC
Confidence            79999999999999998642 23  456665543

>PRK05866 short chain dehydrogenase; Provisional

Probab=90.06  E-value=0.97  Score=42.42  Aligned_cols=40  Identities=20%  Similarity=0.170  Sum_probs=34.7

Q ss_pred             ccccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          160 GNLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       160 ~~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      +..+.|+++.|.|- |.||+.+|+.|+ .-|++|++.+++.+
T Consensus        35 ~~~~~~k~vlItGasggIG~~la~~La-~~G~~Vi~~~R~~~   75 (293)
T PRK05866         35 PVDLTGKRILLTGASSGIGEAAAEQFA-RRGATVVAVARRED   75 (293)
T ss_pred             CcCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            46788999999996 999999999985 66999999998764

>PRK14851 hypothetical protein; Provisional

Probab=90.02  E-value=0.77  Score=48.57  Aligned_cols=36  Identities=22%  Similarity=0.288  Sum_probs=29.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDL  197 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~  197 (342)
                      ..|.+++|+|+|+|.+|..+|..|+ ..|. ++..+|.
T Consensus        39 ~kL~~~~VlIvG~GGlGs~va~~La-r~GVG~l~LvD~   75 (679)
T PRK14851         39 ERLAEAKVAIPGMGGVGGVHLITMV-RTGIGRFHIADF   75 (679)
T ss_pred             HHHhcCeEEEECcCHHHHHHHHHHH-HhCCCeEEEEcC
Confidence            5689999999999999999999985 5565 5666663

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=89.96  E-value=1.3  Score=40.53  Aligned_cols=93  Identities=19%  Similarity=0.169  Sum_probs=57.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH--hhcCCEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV--LREADVI  240 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--l~~aDiV  240 (342)
                      .|.++.|.|.|.+|+.+++. ++++|++ |++.++..+...  ....+       +......   ...++.  -...|++
T Consensus        97 ~g~~vlI~g~g~vg~~~i~~-a~~~g~~~vi~~~~~~~~~~--~~~~~-------g~~~~~~---~~~~~~~~~~~~d~v  163 (277)
T cd08255          97 LGERVAVVGLGLVGLLAAQL-AKAAGAREVVGVDPDAARRE--LAEAL-------GPADPVA---ADTADEIGGRGADVV  163 (277)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCcEEEECCCHHHHH--HHHHc-------CCCcccc---ccchhhhcCCCCCEE
Confidence            47899999999999999998 5899999 888887654421  11111       1000000   000111  1247888


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      +.+....+     .-...++.++++..+++++-.
T Consensus       164 l~~~~~~~-----~~~~~~~~l~~~g~~~~~g~~  192 (277)
T cd08255         164 IEASGSPS-----ALETALRLLRDRGRVVLVGWY  192 (277)
T ss_pred             EEccCChH-----HHHHHHHHhcCCcEEEEEecc
Confidence            87765321     224567888999999988643

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=89.95  E-value=0.48  Score=47.17  Aligned_cols=114  Identities=18%  Similarity=0.148  Sum_probs=66.2

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +.++++.|+|+|..|.+.++.| +..|.+|.++|...........        ..+.   .......-.+.+...|+|+.
T Consensus         4 ~~~~~i~v~G~G~sG~s~~~~l-~~~G~~v~~~D~~~~~~~~~~l--------~~g~---~~~~~~~~~~~~~~~d~vv~   71 (438)
T PRK03806          4 YQGKKVVIIGLGLTGLSCVDFF-LARGVTPRVIDTRITPPGLDKL--------PENV---ERHTGSLNDEWLLAADLIVA   71 (438)
T ss_pred             cCCCEEEEEeeCHHHHHHHHHH-HHCCCeEEEEcCCCCchhHHHH--------hcCC---EEEeCCCCHHHhcCCCEEEE
Confidence            4688999999999999999986 6889999999976532111100        0111   11110111234567887665


Q ss_pred             cCCCCcccc----------cccCH-HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          243 HPVLDKTTY----------HLINK-ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       243 ~~pl~~~t~----------~li~~-~~l~~-mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ..-..++..          .++.+ +.+.. ++...+-|-=+.|..-...-|.+.|+.
T Consensus        72 spgi~~~~~~~~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~  129 (438)
T PRK03806         72 SPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA  129 (438)
T ss_pred             CCCCCCCCHHHHHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence            432222211          12333 23332 333355566678888888877777765

>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional

Probab=89.90  E-value=1.3  Score=45.36  Aligned_cols=103  Identities=17%  Similarity=0.120  Sum_probs=65.8

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~L~gktvgIvG~---G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                      .+.|++|+++|=   |++..+++..+ ..|| ++|.+..|..-...+.+.+.    +..   ....+....++++.++++
T Consensus       171 ~l~glkVa~vGD~~~~rva~Sl~~~l-~~~g~~~v~l~~P~~~~~p~~~~~~----a~~---~G~~v~i~~d~~eav~~A  242 (525)
T PRK13376        171 DNSFIHIALVGDLLHGRTVHSKVNGL-KIFKNVKVDLIAPEELAMPEHYVEK----MKK---NGFEVRIFSSIEEYLSQK  242 (525)
T ss_pred             CcCCCEEEEECCCCCCcHHHHHHHHH-HhcCCcEEEEECCccccCCHHHHHH----HHH---cCCeEEEEcCHHHHhccC
Confidence            467999999998   68999999886 5798 99998877432111221111    111   112233457999999999


Q ss_pred             CEE--EE-------cCCCC--c---c--cccccCHHHHhcCCCCcEEEEcC
Q 019387          238 DVI--SL-------HPVLD--K---T--TYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       238 DiV--~l-------~~pl~--~---~--t~~li~~~~l~~mk~ga~lINva  272 (342)
                      |+.  ..       .++..  +   +  -...++++.++.+|++++|.=+.
T Consensus       243 D~tdvw~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL  293 (525)
T PRK13376        243 DVAKIWYFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL  293 (525)
T ss_pred             CccceEEEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence            952  22       12111  0   0  13456889999999998887753

>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]

Probab=89.90  E-value=1.2  Score=42.98  Aligned_cols=72  Identities=19%  Similarity=0.343  Sum_probs=48.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcC---CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC--CE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGF---KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DV  239 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~af---g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a--Di  239 (342)
                      -++||+|.|.|++..++.| ...   +..|. ++||+.+.. .       +++...+..  ....+.+.|+|++..  |+
T Consensus         7 ir~Gi~g~g~ia~~f~~al-~~~p~s~~~Ivava~~s~~~A-~-------~fAq~~~~~--~~k~y~syEeLakd~~vDv   75 (351)
T KOG2741|consen    7 IRWGIVGAGRIARDFVRAL-HTLPESNHQIVAVADPSLERA-K-------EFAQRHNIP--NPKAYGSYEELAKDPEVDV   75 (351)
T ss_pred             eEEEEeehhHHHHHHHHHh-ccCcccCcEEEEEecccHHHH-H-------HHHHhcCCC--CCccccCHHHHhcCCCcCE
Confidence            3799999999999999987 433   56666 467754322 2       223333332  223468999999876  89


Q ss_pred             EEEcCCCCc
Q 019387          240 ISLHPVLDK  248 (342)
Q Consensus       240 V~l~~pl~~  248 (342)
                      |.+..|...
T Consensus        76 Vyi~~~~~q   84 (351)
T KOG2741|consen   76 VYISTPNPQ   84 (351)
T ss_pred             EEeCCCCcc
Confidence            998887543

>PRK08324 short chain dehydrogenase; Validated

Probab=89.89  E-value=0.93  Score=47.98  Aligned_cols=40  Identities=30%  Similarity=0.373  Sum_probs=34.5

Q ss_pred             cccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ..+.||++.|.| .|.||+.+|+.| ...|.+|++.+++.+.
T Consensus       418 ~~l~gk~vLVTGasggIG~~la~~L-~~~Ga~Vvl~~r~~~~  458 (681)
T PRK08324        418 KPLAGKVALVTGAAGGIGKATAKRL-AAEGACVVLADLDEEA  458 (681)
T ss_pred             cCCCCCEEEEecCCCHHHHHHHHHH-HHCcCEEEEEeCCHHH
Confidence            457899999999 599999999998 5779999999988653

>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed

Probab=89.79  E-value=1  Score=40.43  Aligned_cols=38  Identities=29%  Similarity=0.290  Sum_probs=32.5

Q ss_pred             ccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .+.++++.|.| .|.+|+.+++.|+ ..|.+|++.+++..
T Consensus         3 ~~~~~~ilItGasg~iG~~l~~~l~-~~g~~V~~~~r~~~   41 (251)
T PRK12826          3 DLEGRVALVTGAARGIGRAIAVRLA-ADGAEVIVVDICGD   41 (251)
T ss_pred             CCCCCEEEEcCCCCcHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            36789999999 7999999999985 66999999988754

>PRK10083 putative oxidoreductase; Provisional

Probab=89.75  E-value=1.6  Score=41.33  Aligned_cols=96  Identities=17%  Similarity=0.209  Sum_probs=55.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhc-CCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh----cC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEG-FKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----EA  237 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~a-fg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~----~a  237 (342)
                      .|.+|.|.|.|.+|+.+++. +++ +|++ |++.++.+++. +. ...+       +....-.....++.+.+.    +.
T Consensus       160 ~g~~vlI~g~g~vG~~~~~~-a~~~~G~~~v~~~~~~~~~~-~~-~~~~-------Ga~~~i~~~~~~~~~~~~~~g~~~  229 (339)
T PRK10083        160 EQDVALIYGAGPVGLTIVQV-LKGVYNVKAVIVADRIDERL-AL-AKES-------GADWVINNAQEPLGEALEEKGIKP  229 (339)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHhCCCCEEEEEcCCHHHH-HH-HHHh-------CCcEEecCccccHHHHHhcCCCCC
Confidence            47899999999999999988 475 6996 66677765432 11 1111       111000001123444432    23


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      |+++-+... +.    .-.+.++.++++..+|+++..
T Consensus       230 d~vid~~g~-~~----~~~~~~~~l~~~G~~v~~g~~  261 (339)
T PRK10083        230 TLIIDAACH-PS----ILEEAVTLASPAARIVLMGFS  261 (339)
T ss_pred             CEEEECCCC-HH----HHHHHHHHhhcCCEEEEEccC
Confidence            567666542 11    124557888899999998753

>PRK07985 oxidoreductase; Provisional

Probab=89.58  E-value=1.4  Score=41.40  Aligned_cols=35  Identities=26%  Similarity=0.152  Sum_probs=30.1

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~  198 (342)
                      +.||++.|.|- |.||+.+|+.|+ ..|++|+..++.
T Consensus        47 ~~~k~vlITGas~gIG~aia~~L~-~~G~~Vi~~~~~   82 (294)
T PRK07985         47 LKDRKALVTGGDSGIGRAAAIAYA-REGADVAISYLP   82 (294)
T ss_pred             cCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEecCC
Confidence            78899999995 899999999985 679999887654

>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3

Probab=89.56  E-value=1.4  Score=41.81  Aligned_cols=104  Identities=16%  Similarity=0.185  Sum_probs=57.4

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh-------------HHHHH-HhhhhhhhhccCCCCcccc----cc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT-------------RLEKF-VTAYGQFLKANGEQPVTWK----RA  227 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~-------------~~~~~-~~~~~~~~~~~~~~~~~~~----~~  227 (342)
                      +|.|||.|.+|.++++.|+ ..|. ++...|...-+             ...+. .+.....+..-. +...+.    ..
T Consensus         1 kVlVVGaGGlG~eilknLa-l~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~n-p~v~I~~~~~~i   78 (291)
T cd01488           1 KILVIGAGGLGCELLKNLA-LSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRV-PGVNVTPHFGKI   78 (291)
T ss_pred             CEEEECCCHHHHHHHHHHH-HcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHC-CCCEEEEEeccc
Confidence            5899999999999999985 4565 67777743211             00000 000000111100 011110    11


Q ss_pred             CC-HHHHhhcCCEEEEcCCCCcccccccCHHHHhcC-----CCCcEEEEcCC
Q 019387          228 SS-MDEVLREADVISLHPVLDKTTYHLINKERLATM-----KKEAILVNCSR  273 (342)
Q Consensus       228 ~~-l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~m-----k~ga~lINvaR  273 (342)
                      .+ -++.+++.|+|+.++. +.+++..+|+...+..     +.+.-+|..+-
T Consensus        79 ~~~~~~f~~~fdvVi~alD-n~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt  129 (291)
T cd01488          79 QDKDEEFYRQFNIIICGLD-SIEARRWINGTLVSLLLYEDPESIIPLIDGGT  129 (291)
T ss_pred             CchhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHhccccccccCccEEEEEE
Confidence            12 2578899999999885 5678888887765544     23345666653

UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=89.54  E-value=1  Score=40.88  Aligned_cols=38  Identities=26%  Similarity=0.204  Sum_probs=32.8

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .+.||++.|.|- |.||+.+|+.|+ .-|++|++.++...
T Consensus         7 ~~~~k~vlItGa~g~iG~~ia~~l~-~~G~~V~~~~r~~~   45 (255)
T PRK07523          7 DLTGRRALVTGSSQGIGYALAEGLA-QAGAEVILNGRDPA   45 (255)
T ss_pred             CCCCCEEEEECCcchHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            478999999995 999999999985 67999999988764

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=89.52  E-value=2.2  Score=41.23  Aligned_cols=95  Identities=15%  Similarity=0.186  Sum_probs=58.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCCHHHHh-----hc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVL-----RE  236 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll-----~~  236 (342)
                      .|++|.|.|-|.+|+.+++. ++++|. .|++.+..+.+. +. ...+       +.... +. ...++.+.+     ..
T Consensus       186 ~g~~vlI~g~g~vG~~~~~l-a~~~G~~~v~~~~~~~~k~-~~-~~~~-------g~~~~-i~~~~~~~~~~v~~~~~~~  254 (365)
T cd08278         186 PGSSIAVFGAGAVGLAAVMA-AKIAGCTTIIAVDIVDSRL-EL-AKEL-------GATHV-INPKEEDLVAAIREITGGG  254 (365)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHHH-HH-HHHc-------CCcEE-ecCCCcCHHHHHHHHhCCC
Confidence            47899999999999999988 589999 588888765432 11 1111       11100 00 111222222     34


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      .|+|+-|+...    . .-...++.++++..+|.++..
T Consensus       255 ~d~vld~~g~~----~-~~~~~~~~l~~~G~~v~~g~~  287 (365)
T cd08278         255 VDYALDTTGVP----A-VIEQAVDALAPRGTLALVGAP  287 (365)
T ss_pred             CcEEEECCCCc----H-HHHHHHHHhccCCEEEEeCcC
Confidence            78888887521    1 124568888999999988754

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2

Probab=89.51  E-value=0.95  Score=43.30  Aligned_cols=97  Identities=19%  Similarity=0.179  Sum_probs=56.2

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh------------------HHHHHHhhhhhhhhc-cCCCCccc-c
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKA-NGEQPVTW-K  225 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~-~~~~~~~~-~  225 (342)
                      +|.|||.|.+|.++++.|+ ..|. ++..+|...-+                  +.+...    ..+.. ........ .
T Consensus         1 kVlIVGaGGlG~EiaKnLa-l~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa----~~l~~lNp~v~V~~~~   75 (312)
T cd01489           1 KVLVVGAGGIGCELLKNLV-LTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAK----EAVLSFNPNVKIVAYH   75 (312)
T ss_pred             CEEEECCCHHHHHHHHHHH-HhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHH----HHHHHHCCCCeEEEEe
Confidence            5899999999999999985 5566 67777743211                  000000    00111 00000100 0


Q ss_pred             -ccC---CHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          226 -RAS---SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       226 -~~~---~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                       ...   ...+.+++.|+|+.++. +.+++..+|+.....   +.-+|+.+
T Consensus        76 ~~i~~~~~~~~f~~~~DvVv~a~D-n~~ar~~in~~c~~~---~ip~I~~g  122 (312)
T cd01489          76 ANIKDPDFNVEFFKQFDLVFNALD-NLAARRHVNKMCLAA---DVPLIESG  122 (312)
T ss_pred             ccCCCccchHHHHhcCCEEEECCC-CHHHHHHHHHHHHHC---CCCEEEEe
Confidence             111   13478899999999985 567788888766553   44566654

UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=89.45  E-value=1.8  Score=41.45  Aligned_cols=95  Identities=19%  Similarity=0.177  Sum_probs=58.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccC------CHHHHh-
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRAS------SMDEVL-  234 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~l~~ll-  234 (342)
                      .|++|.|.|.|.+|+.+++. ++.+|+ +|++.++......  +...+       +.... ......      .+.++. 
T Consensus       177 ~g~~vlI~g~g~vG~~~~~l-ak~~G~~~v~~~~~~~~~~~--~~~~~-------g~~~vi~~~~~~~~~~~~~i~~~~~  246 (361)
T cd08231         177 AGDTVVVQGAGPLGLYAVAA-AKLAGARRVIVIDGSPERLE--LAREF-------GADATIDIDELPDPQRRAIVRDITG  246 (361)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHHH--HHHHc-------CCCeEEcCcccccHHHHHHHHHHhC
Confidence            58899999999999999998 589999 8998887654321  11111       11100 000000      122222 


Q ss_pred             -hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       235 -~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                       ...|+++-+....     ..-...++.++++..+|.++.
T Consensus       247 ~~~~d~vid~~g~~-----~~~~~~~~~l~~~G~~v~~g~  281 (361)
T cd08231         247 GRGADVVIEASGHP-----AAVPEGLELLRRGGTYVLVGS  281 (361)
T ss_pred             CCCCcEEEECCCCh-----HHHHHHHHHhccCCEEEEEcC
Confidence             2468888776421     112456788888889988864

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>PTZ00317 NADP-dependent malic enzyme; Provisional

Probab=89.45  E-value=4.9  Score=41.31  Aligned_cols=174  Identities=15%  Similarity=0.116  Sum_probs=108.0

Q ss_pred             CCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHh-
Q 019387          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE-  186 (342)
Q Consensus       108 ~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~-  186 (342)
                      ..|.+.|+--.   .+|-.+++-+|+..|-.                     |..|...++.|+|.|.-|-.+|+.|.. 
T Consensus       264 ~~i~~FnDDiQ---GTaaV~lAgll~Alr~~---------------------g~~l~d~riv~~GAGsAgiGia~ll~~~  319 (559)
T PTZ00317        264 NKYRCFNDDIQ---GTGAVIAAGFLNALKLS---------------------GVPPEEQRIVFFGAGSAAIGVANNIADL  319 (559)
T ss_pred             cCCCEecccch---hHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEECCCHHHHHHHHHHHHH
Confidence            34777776553   45666788888887632                     356889999999999999999998743 


Q ss_pred             --cCCc-------EEEEEcCCch---hH---HHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC--CEEEEcCCCCcc
Q 019387          187 --GFKM-------NLIYYDLYQA---TR---LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVISLHPVLDKT  249 (342)
Q Consensus       187 --afg~-------~V~~~d~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a--DiV~l~~pl~~~  249 (342)
                        ..|.       +++.+|...-   .+   +..+...|.   +......  .....+|.|+++..  |+++=+-    .
T Consensus       320 m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k~~fa---~~~~~~~--~~~~~~L~e~v~~~KPtvLIG~S----~  390 (559)
T PTZ00317        320 AAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFA---RTDISAE--DSSLKTLEDVVRFVKPTALLGLS----G  390 (559)
T ss_pred             HHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHHHHHh---ccccccc--cccCCCHHHHHhccCCCEEEEec----C
Confidence              2466       7888887631   11   222222221   1110000  00135899999999  9987542    1


Q ss_pred             cccccCHHHHhcCCC---CcEEEEcCCCcc---cCHHHHHHHHHcCC-ceEEEEe---cC----CCCC---CCccccccc
Q 019387          250 TYHLINKERLATMKK---EAILVNCSRGPV---IDEVALVEHLKQNP-MFRVGLD---VF----EVTE---LGFSSFKHI  312 (342)
Q Consensus       250 t~~li~~~~l~~mk~---ga~lINvaRG~~---vd~~aL~~aL~~g~-i~~aaLD---V~----~~EP---~~~~~tPhi  312 (342)
                      ..+.|+++.++.|.+   ..++.=.|.-.-   ...++.+++ .+|+ |.+.|..   |.    ...|   .|.++.|-+
T Consensus       391 ~~g~Ft~evv~~Ma~~~~rPIIFaLSNPt~~aE~tpeda~~~-T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGi  469 (559)
T PTZ00317        391 VGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAYKW-TNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGV  469 (559)
T ss_pred             CCCCCCHHHHHHHHhcCCCCEEEECCCCCCCCCcCHHHHHhh-ccCCEEEEECCCCCCcccCCeeeccCcCcceeeccch
Confidence            248999999999984   788887776653   233334443 2344 4444442   11    1333   678888877


Q ss_pred             ccc
Q 019387          313 STQ  315 (342)
Q Consensus       313 a~~  315 (342)
                      +-.
T Consensus       470 glG  472 (559)
T PTZ00317        470 GLG  472 (559)
T ss_pred             hhh
Confidence            543

>PTZ00188 adrenodoxin reductase; Provisional

Probab=89.36  E-value=2.2  Score=43.43  Aligned_cols=85  Identities=12%  Similarity=0.146  Sum_probs=51.9

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh-------------HHHHHHhhhhhhhhccCCC---Ccccc
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT-------------RLEKFVTAYGQFLKANGEQ---PVTWK  225 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~-------------~~~~~~~~~~~~~~~~~~~---~~~~~  225 (342)
                      .-..++|+|||-|.-|-..|+.|++..|.+|..|++.+..             ........|...+...+..   ...+-
T Consensus        36 ~~~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG  115 (506)
T PTZ00188         36 EAKPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVG  115 (506)
T ss_pred             CCCCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEec
Confidence            3458899999999999999986555569999999877542             1111111221111111110   11111


Q ss_pred             ccCCHHHHhhcCCEEEEcCCC
Q 019387          226 RASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       226 ~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      ...+++++..+.|.|++++-.
T Consensus       116 ~Dvt~eeL~~~YDAVIlAtGA  136 (506)
T PTZ00188        116 VDLKMEELRNHYNCVIFCCGA  136 (506)
T ss_pred             CccCHHHHHhcCCEEEEEcCC
Confidence            224688888899999988653

>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family

Probab=88.96  E-value=0.97  Score=41.91  Aligned_cols=70  Identities=13%  Similarity=0.205  Sum_probs=45.6

Q ss_pred             eEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh------hc-CC
Q 019387          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE-AD  238 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll------~~-aD  238 (342)
                      +|.|.|- |.+|+.+++.| ..-|.+|.+..|+++.....          ........+...+++.+++      .. +|
T Consensus         1 ~ilVtGatG~iG~~vv~~L-~~~g~~V~~~~R~~~~~~~~----------~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d   69 (285)
T TIGR03649         1 TILLTGGTGKTASRIARLL-QAASVPFLVASRSSSSSAGP----------NEKHVKFDWLDEDTWDNPFSSDDGMEPEIS   69 (285)
T ss_pred             CEEEEcCCChHHHHHHHHH-HhCCCcEEEEeCCCccccCC----------CCccccccCCCHHHHHHHHhcccCcCCcee
Confidence            3677887 99999999997 46689999998876532100          0000111233345677777      45 89


Q ss_pred             EEEEcCCCC
Q 019387          239 VISLHPVLD  247 (342)
Q Consensus       239 iV~l~~pl~  247 (342)
                      .|+++.|..
T Consensus        70 ~v~~~~~~~   78 (285)
T TIGR03649        70 AVYLVAPPI   78 (285)
T ss_pred             EEEEeCCCC
Confidence            999887754

This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.

>PLN02827 Alcohol dehydrogenase-like

Probab=88.96  E-value=2.2  Score=41.61  Aligned_cols=94  Identities=17%  Similarity=0.170  Sum_probs=56.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCcccccc---CCHHH----Hhh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDE----VLR  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~----ll~  235 (342)
                      .|++|.|.|.|.+|..+++. ++++|++ |++.+..++.. +. ...+       +... .+...   .+..+    +..
T Consensus       193 ~g~~VlV~G~G~vG~~~iql-ak~~G~~~vi~~~~~~~~~-~~-a~~l-------Ga~~-~i~~~~~~~~~~~~v~~~~~  261 (378)
T PLN02827        193 KGSSVVIFGLGTVGLSVAQG-AKLRGASQIIGVDINPEKA-EK-AKTF-------GVTD-FINPNDLSEPIQQVIKRMTG  261 (378)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEECCCHHHH-HH-HHHc-------CCcE-EEcccccchHHHHHHHHHhC
Confidence            48999999999999999998 5899984 77787665432 11 1111       1100 01000   12222    221


Q ss_pred             -cCCEEEEcCCCCcccccccCHHHHhcCCCC-cEEEEcCC
Q 019387          236 -EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 -~aDiV~l~~pl~~~t~~li~~~~l~~mk~g-a~lINvaR  273 (342)
                       ..|+|+-+.... .   .+ ...++.+++| ..+|.++-
T Consensus       262 ~g~d~vid~~G~~-~---~~-~~~l~~l~~g~G~iv~~G~  296 (378)
T PLN02827        262 GGADYSFECVGDT-G---IA-TTALQSCSDGWGLTVTLGV  296 (378)
T ss_pred             CCCCEEEECCCCh-H---HH-HHHHHhhccCCCEEEEECC
Confidence             478888776521 1   12 3457778887 88877764

>TIGR01759 MalateDH-SF1 malate dehydrogenase

Probab=88.94  E-value=1.4  Score=42.37  Aligned_cols=108  Identities=18%  Similarity=0.177  Sum_probs=58.3

Q ss_pred             eEEEEec-CHHHHHHHHHHHhcCCc-------EEEEEcCCchh-HHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhc
Q 019387          167 TVGVIGA-GRIGSAYARMMVEGFKM-------NLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLRE  236 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~~afg~-------~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~  236 (342)
                      +|+|||. |.+|+.+|-.|+ ..|.       ++..+|..... .......    .+........ ......+..+.+++
T Consensus         5 KV~IIGa~G~VG~~~a~~l~-~~~~~~~~~~~el~L~Di~~~~~~a~g~a~----Dl~~~~~~~~~~~~i~~~~~~~~~d   79 (323)
T TIGR01759         5 RVAVTGAAGQIGYSLLFRIA-SGELFGKDQPVVLHLLDIPPAMKALEGVAM----ELEDCAFPLLAGVVATTDPEEAFKD   79 (323)
T ss_pred             EEEEECCCcHHHHHHHHHHH-hCCcccCCCccEEEEEecCCcccccchHHH----HHhhccccccCCcEEecChHHHhCC
Confidence            7999999 999999998763 3343       79999985421 1111100    0111000000 01112355577899


Q ss_pred             CCEEEEcCCCC--c-cccc--------ccC--HHHHhcCCC-CcEEEEcCCCcccCHHH
Q 019387          237 ADVISLHPVLD--K-TTYH--------LIN--KERLATMKK-EAILVNCSRGPVIDEVA  281 (342)
Q Consensus       237 aDiV~l~~pl~--~-~t~~--------li~--~~~l~~mk~-ga~lINvaRG~~vd~~a  281 (342)
                      ||+|+++.-..  + +|+-        ++.  ...+....+ .++++.++  +.+|.-.
T Consensus        80 aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvs--NPvDv~t  136 (323)
T TIGR01759        80 VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVG--NPANTNA  136 (323)
T ss_pred             CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeC--CcHHHHH
Confidence            99999885432  1 2221        111  123344444 88999986  5555544

This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.

>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases

Probab=88.94  E-value=1.7  Score=43.55  Aligned_cols=124  Identities=16%  Similarity=0.262  Sum_probs=72.9

Q ss_pred             eEEEEecCHHHHH--HHHHHH---hcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          167 TVGVIGAGRIGSA--YARMMV---EGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       167 tvgIvG~G~IG~~--vA~~l~---~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      +|.|||-|.. ..  +.+-|+   ..++ -+|..+|..++. ++. ...+...+..+...+..+....+.++++.+||||
T Consensus         2 KI~iIGaGS~-~tp~li~~l~~~~~~l~~~ei~L~DId~~r-l~~-v~~l~~~~~~~~g~~~~v~~Ttdr~eAl~gADfV   78 (437)
T cd05298           2 KIVIAGGGST-YTPGIVKSLLDRKEDFPLRELVLYDIDAER-QEK-VAEAVKILFKENYPEIKFVYTTDPEEAFTDADFV   78 (437)
T ss_pred             eEEEECCcHH-HHHHHHHHHHhCcccCCCCEEEEECCCHHH-HHH-HHHHHHHHHHhhCCCeEEEEECCHHHHhCCCCEE
Confidence            7899999986 33  222221   1344 689999998743 222 2222122222222345666778999999999999


Q ss_pred             EEcCCCCc-----------ccccccCH----------------------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          241 SLHPVLDK-----------TTYHLINK----------------------ERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       241 ~l~~pl~~-----------~t~~li~~----------------------~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      ++..-..-           .-+|+++.                      +.+....|++.+||++-.--+-..++.+.+.
T Consensus        79 i~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~~~vt~~~~~~~~  158 (437)
T cd05298          79 FAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPAAIVAEALRRLFP  158 (437)
T ss_pred             EEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHCC
Confidence            88764332           12344431                      2344556899999998877666666665533


Q ss_pred             cCCceE
Q 019387          288 QNPMFR  293 (342)
Q Consensus       288 ~g~i~~  293 (342)
                      ..++.|
T Consensus       159 ~~kviG  164 (437)
T cd05298         159 NARILN  164 (437)
T ss_pred             CCCEEE
Confidence            334433

Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas

>PRK08628 short chain dehydrogenase; Provisional

Probab=88.90  E-value=1.1  Score=40.69  Aligned_cols=40  Identities=23%  Similarity=0.155  Sum_probs=33.1

Q ss_pred             cccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ..+.|+++.|.| -|.||+.+|+.|+ ..|++|.+.++.++.
T Consensus         3 ~~l~~~~ilItGasggiG~~la~~l~-~~G~~v~~~~r~~~~   43 (258)
T PRK08628          3 LNLKDKVVIVTGGASGIGAAISLRLA-EEGAIPVIFGRSAPD   43 (258)
T ss_pred             CCcCCCEEEEeCCCChHHHHHHHHHH-HcCCcEEEEcCChhh
Confidence            357899999999 5789999999985 679999988876643

>PRK07326 short chain dehydrogenase; Provisional

Probab=88.82  E-value=1.3  Score=39.58  Aligned_cols=38  Identities=24%  Similarity=0.231  Sum_probs=32.0

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      +.|+++.|.|- |.||+.+++.|+ ..|.+|++.++.+..
T Consensus         4 ~~~~~ilItGatg~iG~~la~~l~-~~g~~V~~~~r~~~~   42 (237)
T PRK07326          4 LKGKVALITGGSKGIGFAIAEALL-AEGYKVAITARDQKE   42 (237)
T ss_pred             CCCCEEEEECCCCcHHHHHHHHHH-HCCCEEEEeeCCHHH
Confidence            45789999985 999999999985 569999999987643

>PRK06949 short chain dehydrogenase; Provisional

Probab=88.80  E-value=1.3  Score=40.01  Aligned_cols=39  Identities=18%  Similarity=0.290  Sum_probs=33.6

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .+.||++.|.|- |.||+.+|+.| ...|++|++.+++.+.
T Consensus         6 ~~~~k~ilItGasg~IG~~~a~~l-~~~G~~Vi~~~r~~~~   45 (258)
T PRK06949          6 NLEGKVALVTGASSGLGARFAQVL-AQAGAKVVLASRRVER   45 (258)
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHH
Confidence            478999999996 99999999998 4679999999887643

>PRK08589 short chain dehydrogenase; Validated

Probab=88.69  E-value=1.1  Score=41.32  Aligned_cols=35  Identities=23%  Similarity=0.243  Sum_probs=31.3

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~  198 (342)
                      +.||++.|.|- |.||+++|+.|+ .-|++|++.++.
T Consensus         4 l~~k~vlItGas~gIG~aia~~l~-~~G~~vi~~~r~   39 (272)
T PRK08589          4 LENKVAVITGASTGIGQASAIALA-QEGAYVLAVDIA   39 (272)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEeCc
Confidence            67999999998 789999999985 679999999887

>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated

Probab=88.68  E-value=9  Score=37.43  Aligned_cols=150  Identities=13%  Similarity=0.107  Sum_probs=82.0

Q ss_pred             eCCCCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCC-C-C---HHHHHHHhC-CCceEEEecCCCCccHHHHHHhh
Q 019387           10 WNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTI-L-S---VEDIIALIG-DKCDGVIGQLTEDWGETLFAALS   83 (342)
Q Consensus        10 ~~~~~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~-~-~---~~e~~~~~~-~~~d~vi~~~~~~~~~e~l~~l~   83 (342)
                      -.|+...+|++|++-..+.+.+.|++.|.++...+.-+.. . .   -++....+. +.+|.++..+..-+. .+++.+.
T Consensus         6 ~~pL~g~rIlvtr~~~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~~~~~d~vvfTS~ngv~-~~~~~l~   84 (381)
T PRK07239          6 SAPLAGFTVGVTAARRAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALIAAPPDIVVATTGIGFR-GWVEAAD   84 (381)
T ss_pred             CCCCCCcEEEEeccCCHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHHcCCCCEEEEeChHHHH-HHHHHHH
Confidence            3588899999998654455678899999988665332211 1 1   122223332 348888865432221 1222222


Q ss_pred             cc-----------CCceEEEccccCCccChhHHHhCCeeEecCCCC-CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCC
Q 019387           84 RA-----------GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGV-LTETTAELAASLSLAAARRIVEADEFMRAGLYD  151 (342)
Q Consensus        84 ~l-----------~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~-~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~  151 (342)
                      ..           ++|+.   ++|-.-  -+++.+.|+.+.-.|.. +++..++...                  .    
T Consensus        85 ~~~~~~~~~~~l~~~~i~---aVG~~T--a~aL~~~G~~~~~~p~~~~~e~L~~~l~------------------~----  137 (381)
T PRK07239         85 GWGLADELLEALSSARLL---ARGPKA--TGAIRAAGLREEWSPASESSAEVLEYLL------------------E----  137 (381)
T ss_pred             HcCChHHHHHHHcCCeEE---EECccH--HHHHHHcCCCCccCCCCCccHHHHHHHh------------------c----
Confidence            11           11332   233222  34577899987666543 3444444321                  0    


Q ss_pred             CCCCCcccccccCCCeEEEEecC-----HHHHHHHHHHHhcCCcEEEEEcC
Q 019387          152 GWLPNLFVGNLLKGQTVGVIGAG-----RIGSAYARMMVEGFKMNLIYYDL  197 (342)
Q Consensus       152 ~w~~~~~~~~~L~gktvgIvG~G-----~IG~~vA~~l~~afg~~V~~~d~  197 (342)
                               ....|++|.|.-.|     .....+++.| +..|++|.....
T Consensus       138 ---------~~~~g~~vli~~~~~~~~~~~~~~L~~~L-~~~G~~V~~~~v  178 (381)
T PRK07239        138 ---------EGVAGKRIAVQLHGATDEWEPLPEFLEAL-RAAGAEVVPVPV  178 (381)
T ss_pred             ---------CCCCCCEEEEEcCCCccccCchHHHHHHH-HHCCCEEEEeCc
Confidence                     12457899988665     3334688887 788887664433

>PRK07109 short chain dehydrogenase; Provisional

Probab=88.54  E-value=1.6  Score=41.93  Aligned_cols=38  Identities=21%  Similarity=0.223  Sum_probs=32.6

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .+.++++.|.|- |.||+.+|+.|+ ..|++|+..+++.+
T Consensus         5 ~l~~k~vlITGas~gIG~~la~~la-~~G~~Vvl~~R~~~   43 (334)
T PRK07109          5 PIGRQVVVITGASAGVGRATARAFA-RRGAKVVLLARGEE   43 (334)
T ss_pred             CCCCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            467899999996 899999999985 67999999988764

>PLN00112 malate dehydrogenase (NADP); Provisional

Probab=88.50  E-value=4.6  Score=40.59  Aligned_cols=116  Identities=14%  Similarity=0.083  Sum_probs=66.4

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhc--CC------cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEG--FK------MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~a--fg------~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~  236 (342)
                      -+|+|+|. |++|..+|-.|+..  ||      -+++.+|...+.......+-.+....- . ..  .....+-.+.+++
T Consensus       101 ~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvliD~~~~~a~G~amDL~daa~~~-~-~~--v~i~~~~ye~~kd  176 (444)
T PLN00112        101 INVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGSERSKQALEGVAMELEDSLYPL-L-RE--VSIGIDPYEVFQD  176 (444)
T ss_pred             eEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEEcCCcchhHHHHHHHHHhhhhh-c-Cc--eEEecCCHHHhCc
Confidence            48999999 99999999876532  22      378889987754322222211111000 0 01  1111233567799


Q ss_pred             CCEEEEcCCCCccccc------------ccCH--HHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          237 ADVISLHPVLDKTTYH------------LINK--ERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~------------li~~--~~l~~-mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ||+|++..-. +...+            ++..  ..+.. -.+.+++|.++  +.+|.-..+-.=.+
T Consensus       177 aDiVVitAG~-prkpG~tR~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVs--NPvDv~t~v~~k~s  240 (444)
T PLN00112        177 AEWALLIGAK-PRGPGMERADLLDINGQIFAEQGKALNEVASRNVKVIVVG--NPCNTNALICLKNA  240 (444)
T ss_pred             CCEEEECCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcC--CcHHHHHHHHHHHc
Confidence            9999988643 22122            1211  23444 46789999997  66777665544333

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=88.49  E-value=2.5  Score=40.88  Aligned_cols=37  Identities=27%  Similarity=0.364  Sum_probs=32.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~  201 (342)
                      .|.+|.|.|-|.||...++. ++.+|+ +|++.+++.++
T Consensus       186 ~g~~VlV~G~G~vG~~a~~~-ak~~G~~~vi~~~~~~~~  223 (368)
T cd08300         186 PGSTVAVFGLGAVGLAVIQG-AKAAGASRIIGIDINPDK  223 (368)
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHH
Confidence            48899999999999999998 589999 69888887654

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=88.42  E-value=3.1  Score=39.25  Aligned_cols=94  Identities=14%  Similarity=0.053  Sum_probs=55.2

Q ss_pred             CCCeEEEE--ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCH----HHHhh--
Q 019387          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM----DEVLR--  235 (342)
Q Consensus       164 ~gktvgIv--G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l----~~ll~--  235 (342)
                      .|.++.|+  |.|.+|+.+++. ++.+|++|++.++++++....  ..+       +....-.....++    .++..  
T Consensus       142 ~~~~vlv~~~g~g~vG~~a~q~-a~~~G~~vi~~~~~~~~~~~~--~~~-------g~~~~i~~~~~~~~~~v~~~~~~~  211 (324)
T cd08291         142 EGAKAVVHTAAASALGRMLVRL-CKADGIKVINIVRRKEQVDLL--KKI-------GAEYVLNSSDPDFLEDLKELIAKL  211 (324)
T ss_pred             CCCcEEEEccCccHHHHHHHHH-HHHcCCEEEEEeCCHHHHHHH--HHc-------CCcEEEECCCccHHHHHHHHhCCC
Confidence            35566665  899999999997 589999999887765432111  111       1111000011122    22222  


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ..|+++-++.. +.     ....+..++++..+|.++.
T Consensus       212 ~~d~vid~~g~-~~-----~~~~~~~l~~~G~~v~~g~  243 (324)
T cd08291         212 NATIFFDAVGG-GL-----TGQILLAMPYGSTLYVYGY  243 (324)
T ss_pred             CCcEEEECCCc-HH-----HHHHHHhhCCCCEEEEEEe
Confidence            47888877642 11     1345788889999888763

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	342
2dbr_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		2e-28
2dbq_A	334	Crystal Structure Of Glyoxylate Reductase (Ph0597)		1e-26
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		2e-24
2cuk_A	311	Crystal Structure Of Tt0316 Protein From Thermus Th		3e-24
1j49_A	333	Insights Into Domain Closure, Substrate Specificity		1e-22
1j4a_A	333	Insights Into Domain Closure, Substrate Specificity		1e-22
2dld_A	337	D-Lactate Dehydrogenase Complexed With Nadh And Oxa		1e-22
1hl3_A	358	CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK		7e-21
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		2e-20
1mx3_A	347	Crystal Structure Of Ctbp Dehydrogenase Core Holo F		2e-20
1hku_A	358	CtbpBARS: A DUAL-Function Protein Involved In Trans		2e-20
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		3e-20
2yq4_A	343	Crystal Structure Of D-isomer Specific 2-hydroxyaci		4e-20
3ga0_A	358	Ctbp1BARS GLY172->glu Mutant Structure: Impairing N		5e-20
2ome_A	336	Crystal Structure Of Human Ctbp2 Dehydrogenase Comp		7e-20
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		2e-19
3k5p_A	416	Crystal Structure Of Amino Acid-Binding Act: D-Isom		2e-19
1dxy_A	333	Structure Of D-2-Hydroxyisocaproate Dehydrogenase L		9e-19
2w2k_A	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		3e-18
2w2l_D	348	Crystal Structure Of The Holo Forms Of Rhodotorula		3e-18
2w2k_B	348	Crystal Structure Of The Apo Forms Of Rhodotorula G		3e-18
3ddn_A	528	Crystal Structure Of Hydroxypyruvic Acid Phosphate		4e-18
1ygy_A	529	Crystal Structure Of D-3-Phosphoglycerate Dehydroge		4e-18
2g76_A	335	Crystal Structure Of Human 3-Phosphoglycerate Dehyd		1e-17
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		1e-17
4e5k_A	329	Thermostable Phosphite Dehydrogenase In Complex Wit		2e-17
4e5n_A	330	Thermostable Phosphite Dehydrogenase In Complex Wit		2e-17
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		3e-17
4ebf_A	334	Semet Thermostable Phosphite Dehydrogenase Glu175-A		4e-17
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		6e-17
4e5m_A	329	Thermostable Phosphite Dehydrogenase E175aA176R IN		7e-17
4e5p_A	332	Thermostable Phosphite Dehydrogenase A176r Variant		8e-17
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		3e-16
4dgs_A	340	The Crystals Structure Of Dehydrogenase From Rhizob		1e-14
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		4e-14
2p9c_A	410	Crystal Structure Of Serine Bound G336v Mutant Of E		8e-13
2p9g_A	410	Crystal Structure Of Serine Bound G336v,G337v Doubl		9e-13
1psd_A	409	The Allosteric Ligand Site In The Vmax-Type Coopera		3e-12
1xdw_A	331	Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase		1e-11
3gg9_A	352	Crystal Structure Of Putative D-3-Phosphoglycerate		4e-11
2j6i_A	364	Candida Boidinii Formate Dehydrogenase (Fdh) C-Term		9e-11
2fss_A	365	Candida Boidinii Formate Dehydrogenase (Fdh) K47e M		9e-11
1sc6_A	404	Crystal Structure Of W139g D-3-Phosphoglycerate Deh		3e-10
1yba_A	410	The Active Form Of Phosphoglycerate Dehydrogenase L		3e-10
3oet_A	381	D-Erythronate-4-Phosphate Dehydrogenase Complexed W		5e-10
3naq_A	357	Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro		2e-09
3n7u_A	351	Nad-Dependent Formate Dehydrogenase From Higher-Pla		2e-09
2o4c_A	380	Crystal Structure Of D-erythronate-4-phosphate Dehy		1e-08
3fn4_A	401	Apo-form Of Nad-dependent Formate Dehydrogenase Fro		2e-08
2gsd_A	402	Nad-dependent Formate Dehydrogenase From Bacterium		2e-08
1qp8_A	303	Crystal Structure Of A Putative Formate Dehydrogena		3e-08
2nac_A	393	High Resolution Structures Of Holo And Apo Formate		3e-07
2go1_A	401	Nad-Dependent Formate Dehydrogenase From Pseudomona		4e-07
2gug_A	401	Nad-dependent Formate Dehydrogenase From Pseudomona		5e-07
3evt_A	324	Crystal Structure Of Phosphoglycerate Dehydrogenase		6e-05
3hg7_A	324	Crystal Structure Of D-Isomer Specific 2-Hydroxyaci		3e-04

>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334

Iteration: 1
 Score =  122 bits (307), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/272 (33%), Positives = 144/272 (52%), Gaps = 25/272 (9%)
Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
           ++E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N
Sbjct: 18  MLEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTMLSERIDKEVFENAPKL--RIVAN 73
Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD- 151
            AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +  
Sbjct: 74  YAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKK 133
Query: 152 ---GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
               W P  F+G  + G+T+G+IG GRIG A A+   +GF M ++YY   +   +E+ + 
Sbjct: 134 RGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNMRILYYSRTRKEEVERELN 192
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
           A  +F                ++++LRE+D + L   L + TYHLIN+ERL  MKK AIL
Sbjct: 193 A--EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAIL 236
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           +N +RG V+D  ALV+ LK+  +   GLDVFE
Sbjct: 237 INIARGKVVDTNALVKALKEGWIAGAGLDVFE 268

>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/271 (33%), Positives = 141/271 (52%), Gaps = 25/271 (9%)
Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM 93
           +E +  VE+   +K I    +I+     + D ++  L+E   + +F    +   +  +N 
Sbjct: 19  LEDEFEVEVWGDEKEIPR--EILLKKVKEVDALVTXLSERIDKEVFENAPKL--RIVANY 74
Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-- 151
           AVGY+N+D+  A K GI V NTP V                 R +V+ D F+R+G +   
Sbjct: 75  AVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKR 134
Query: 152 --GWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA 209
              W P  F+G  + G+T+G+IG GRIG A A+   +GF   ++YY   +   +E+ + A
Sbjct: 135 GVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR-AKGFNXRILYYSRTRKEEVERELNA 193
Query: 210 YGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILV 269
             +F                ++++LRE+D + L   L + TYHLIN+ERL   KK AIL+
Sbjct: 194 --EF--------------KPLEDLLRESDFVVLAVPLTRETYHLINEERLKLXKKTAILI 237
Query: 270 NCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           N +RG V+D  ALV+ LK+  +   GLDVFE
Sbjct: 238 NIARGKVVDTNALVKALKEGWIAGAGLDVFE 268

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 81/213 (38%), Positives = 114/213 (53%), Gaps = 20/213 (9%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +N+DV AA + GI V N P                   R+I  AD  MR 
Sbjct: 68  KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMRE 127
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G+   W     +G  L+G+T+G+IG GRIG   A++      MN++ YD Y      K V
Sbjct: 128 GV---WAKKEAMGIELEGKTIGIIGFGRIGYQVAKI-ANALGMNILLYDPYPNEERAKEV 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
              G+F+               ++ +L+E+DV+++H  L ++TYHLIN+ERL  MKK AI
Sbjct: 184 N--GKFV--------------DLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           L+N SRGPV+D  ALV+ LK+  +   GLDVFE
Sbjct: 228 LINTSRGPVVDTNALVKALKEGWIAGAGLDVFE 260

>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311

Iteration: 1
 Score =  108 bits (271), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 92/283 (32%), Positives = 148/283 (52%), Gaps = 31/283 (10%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +PG + ++ L E+   VE+   +   L   +++     + +G +G +      
Sbjct: 2   RVLVTRTLPG-KALDRLRERGLEVEV--HRGLFLPKAELL----KRVEGAVGLIPTVEDR 54
Query: 77  TLFAALSRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
                + RA G K  +  +VG ++VD+ AA + GI V +TPGV                 
Sbjct: 55  IDAEVMDRAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVA 114
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           RR+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+  +  F M ++Y+
Sbjct: 115 RRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRAL-AFGMRVVYH 173
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
                               A   +P+ +    S++E+L+EADV+SLH  L   T+ L+N
Sbjct: 174 --------------------ARTPKPLPYP-FLSLEELLKEADVVSLHTPLTPETHRLLN 212
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
           +ERL  MK+ AIL+N +RG ++D  ALVE L+ + +F  GLDV
Sbjct: 213 RERLFAMKRGAILLNTARGALVDTEALVEALRGH-LFGAGLDV 254

>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 123/266 (46%), Gaps = 24/266 (9%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95
           +D   ++  +    L   + +AL     DGV+     D+      AL+  G    S   V
Sbjct: 21  EDAHKDVEVEYTDKLLTPETVAL-AKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV 79
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWL 154
           G +N+D+  A + G  + N P                   R+    DE  +   +D  W 
Sbjct: 80  GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE--KVARHDLRWA 137
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           P   +G  ++ Q VGV+G G IG  + ++M EGF   +I YD+++   LEK     G ++
Sbjct: 138 PT--IGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK----KGYYV 190
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                         S+D++ ++ADVISLH        H+IN E +A MK++ ++VN SRG
Sbjct: 191 -------------DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 237
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFE 300
           P++D  A++  L    +F   +DV+E
Sbjct: 238 PLVDTDAVIRGLDSGKIFGYAMDVYE 263

>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 123/266 (46%), Gaps = 24/266 (9%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV 95
           +D   ++  +    L   + +AL     DGV+     D+      AL+  G    S   V
Sbjct: 21  EDAHKDVEVEYTDKLLTPETVAL-AKGADGVVVYQQLDYIAETLQALADNGITKMSLRNV 79
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYD-GWL 154
           G +N+D+  A + G  + N P                   R+    DE  +   +D  W 
Sbjct: 80  GVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDE--KVARHDLRWA 137
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           P   +G  ++ Q VGV+G G IG  + ++M EGF   +I YD+++   LEK     G ++
Sbjct: 138 PT--IGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK----KGYYV 190
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                         S+D++ ++ADVISLH        H+IN E +A MK++ ++VN SRG
Sbjct: 191 -------------DSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRG 237
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFE 300
           P++D  A++  L    +F   +DV+E
Sbjct: 238 PLVDTDAVIRGLDSGKIFGYAMDVYE 263

>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 72/238 (30%), Positives = 111/238 (46%), Gaps = 21/238 (8%)
Query: 63  CDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXX 122
            DGV+     D+      AL+ AG    S   VG +N+D++ A + G  + N P      
Sbjct: 47  ADGVVVYQQLDYTADTLQALADAGVTKMSLRNVGVDNIDMDKAKELGFQITNVPVYSPNA 106
Query: 123 XXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                        R+    DE M A     W P   +G  ++ Q VGV+G G IG  + R
Sbjct: 107 IAEHAAIQAARVLRQDKRMDEKM-AKRDLRWAPT--IGREVRDQVVGVVGTGHIGQVFMR 163
Query: 183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL 242
           +M EGF   +I YD+++   LEK     G ++              S+D++ ++ADVISL
Sbjct: 164 IM-EGFGAKVIAYDIFKNPELEK----KGYYV-------------DSLDDLYKQADVISL 205
Query: 243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           H        H+IN + +A MK   ++VNCSRG ++D  A++  L    +F   +D +E
Sbjct: 206 HVPDVPANVHMINDKSIAEMKDGVVIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYE 263

>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358

Iteration: 1
 Score = 97.8 bits (242), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 82/303 (27%), Positives = 135/303 (44%), Gaps = 43/303 (14%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG GR+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            + F  N+++YD Y +  +E+   A G             +R S++ ++L  +D ++LH 
Sbjct: 190 AKAFGFNVLFYDPYLSDGIER---ALG------------LQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTEL 304
            L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E    
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 305 GFS 307
            FS
Sbjct: 295 SFS 297

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 17/214 (7%)
Query: 86  GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFM 145
           G K  + ++VGY+++D  AA   GI V +TP V                 RR  EAD  +
Sbjct: 94  GLKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXV 153
Query: 146 RAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK 205
           R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y++    TRL  
Sbjct: 154 RSGSWPGWGPTQLLGXGLTGRRLGIFGXGRIGRAIA-TRARGFGLAIHYHN---RTRLSH 209
Query: 206 FVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKE 265
            +           E+   +    ++D +L  +D+  +           ++ +R+A + + 
Sbjct: 210 AL-----------EEGAIYH--DTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEG 256
Query: 266 AILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           A+++N SRG +I++ AL+E L+   +F  GLDVF
Sbjct: 257 AVVINISRGDLINDDALIEALRSKHLFAAGLDVF 290

>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347

Iteration: 1
 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 61/216 (28%), Positives = 103/216 (47%), Gaps = 20/216 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 95  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVE 154
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y             
Sbjct: 155 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPY------------- 200
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             L    E+ +  +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 201 --LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 258
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFS 307
           +RG ++DE AL + LK+  +    LDV E     FS
Sbjct: 259 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 294

>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358

Iteration: 1
 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 20/216 (9%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N+D+ +A   GIAV N P                   RR     + +R G     + 
Sbjct: 98  GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRTTWLHQALREGTRVQSVE 157
Query: 156 NLFV----GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
            +         ++G+T+G+IG GR+G A A +  + F  N+++YD Y +  +E+   A G
Sbjct: 158 QIREVASGAARIRGETLGIIGLGRVGQAVA-LRAKAFGFNVLFYDPYLSDGIER---ALG 213
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
                        +R S++ ++L  +D ++LH  L++  +HLIN   +  M++ A LVN 
Sbjct: 214 ------------LQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNT 261
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEVTELGFS 307
           +RG ++DE AL + LK+  +    LDV E     FS
Sbjct: 262 ARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFS 297

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score = 95.9 bits (237), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 122/254 (48%), Gaps = 26/254 (10%)
Query: 51  SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGI 110
           S E++  +IG + DG+I   T      +     R   K  S  + GY+N+D+  A K GI
Sbjct: 32  SGEELKGVIG-RFDGIIVSPTTKITREVLENAERL--KVISCHSAGYDNIDLEEATKRGI 88
Query: 111 AVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQ 166
            V    G+                 R+I  AD+F+R G ++     ++ G      L G+
Sbjct: 89  YVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESH-AKIWTGFKRIESLYGK 147
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
            VG++G G IG A AR ++  F + L Y+  ++   +EK + A                R
Sbjct: 148 KVGILGMGAIGKAIARRLIP-FGVKLYYWSRHRKVNVEKELKA----------------R 190
Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
              +DE+L ++D++ L   L + TYH+IN+ER+  ++ +  LVN  RG ++DE A+ E +
Sbjct: 191 YMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAI 249
Query: 287 KQNPMFRVGLDVFE 300
           KQ  +     DVFE
Sbjct: 250 KQGKLKGYATDVFE 263

>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343

Iteration: 1
 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 69/224 (30%), Positives = 101/224 (45%), Gaps = 20/224 (8%)
Query: 76  ETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXX 135
           E ++  LS  G K      VG+N ++ +   KY + V N P                   
Sbjct: 60  EVVYQKLSEYGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLL 119
Query: 136 RRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY 195
           R+I E    M       W  NL + N +   TVG+IG G IGSA A +        +I Y
Sbjct: 120 RKIGEFRYRMDHDHDFTWPSNL-ISNEIYNLTVGLIGVGHIGSAVAEIF-SAMGAKVIAY 177
Query: 196 DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN 255
           D+      E F+T Y  F                 D VL+EAD++SLH  L  +T ++I 
Sbjct: 178 DVAYNPEFEPFLT-YTDF-----------------DTVLKEADIVSLHTPLFPSTENMIG 219
Query: 256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           +++L  MKK A L+NC+RG ++D  AL++ L+   +   GLD  
Sbjct: 220 EKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTL 263

>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358

Iteration: 1
 Score = 95.1 bits (235), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 81/303 (26%), Positives = 134/303 (44%), Gaps = 43/303 (14%)
Query: 23  PMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTEDWGE 76
           PM     + LL  +DC VE+      IL     +A     CD    Q      L E  G 
Sbjct: 20  PMHPRPLVALLDGRDCTVEM-----PILKDVATVAF----CDAQSTQEIHEKVLNEAVGA 70
Query: 77  TLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
            ++    L+R   + F  + +      G++N+D+ +A   GIAV N P            
Sbjct: 71  LMYHTITLTREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTL 130
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYARMM 184
                  RR     + +R G     +  +         ++G+T+G+IG  R+G A A + 
Sbjct: 131 CHILNLYRRTTWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLERVGQAVA-LR 189
Query: 185 VEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP 244
            + F  N+++YD Y +  +E+   A G             +R S++ ++L  +D ++LH 
Sbjct: 190 AKAFGFNVLFYDPYLSDGIER---ALG------------LQRVSTLQDLLFHSDCVTLHC 234
Query: 245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTEL 304
            L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E    
Sbjct: 235 GLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPF 294
Query: 305 GFS 307
            FS
Sbjct: 295 SFS 297

>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336

Iteration: 1
 Score = 94.4 bits (233), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 85/306 (27%), Positives = 135/306 (44%), Gaps = 46/306 (15%)
Query: 20  STKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQ------LTED 73
           S  P P    + LL  +DC VE+      IL     +A     CD    Q      L E 
Sbjct: 1   SMHPRP---LVALLDGRDCTVEM-----PILKDLATVAF----CDAQSTQEIHEKVLNEA 48
Query: 74  WGETLFAA--LSRAGGKAFSNMAV------GYNNVDVNAANKYGIAVGNTPGVXXXXXXX 125
            G  ++    L+R   + F  + V      GY+NVD+ AA + GIAV N P         
Sbjct: 49  VGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETAD 108
Query: 126 XXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFV----GNLLKGQTVGVIGAGRIGSAYA 181
                     RR     + +R G     +  +         ++G+T+G+IG GR G A A
Sbjct: 109 STICHILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVA 168
Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
            +  + F  ++I+YD Y               L+   E+ +  +R  ++ ++L ++D +S
Sbjct: 169 -VRAKAFGFSVIFYDPY---------------LQDGIERSLGVQRVYTLQDLLYQSDCVS 212
Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           LH  L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E 
Sbjct: 213 LHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKALAQALKEGRIRGAALDVHES 272
Query: 302 TELGFS 307
               F+
Sbjct: 273 EPFSFA 278

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 93.6 bits (231), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 67/265 (25%), Positives = 119/265 (44%), Gaps = 29/265 (10%)
Query: 36  QDCRVEICTQKKTILSVEDIIALIGDKC-DGVIGQLTEDWGETLFAALSRAGGKAFSNMA 94
            D ++ I    +T  SV+ ++  + +KC   VI ++ E+              K  S  +
Sbjct: 29  DDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENI-------------KCISTYS 75
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G++++D++A    GI VGN P                   RR  E ++ +R   + GW 
Sbjct: 76  IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWE 135
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
           P   VG  L  +T+G+ G G IG A A+   +GF M++ Y+D ++A+             
Sbjct: 136 PLELVGEKLDNKTLGIYGFGSIGQALAKR-AQGFDMDIDYFDTHRAS------------- 181
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
            ++ E         S+D +L  +   SL+      T +  NK  + ++ + AI+VN +RG
Sbjct: 182 -SSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVF 299
            ++D   +V  L+   +   G DVF
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVF 265

>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416

Iteration: 1
 Score = 93.2 bits (230), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/233 (32%), Positives = 110/233 (47%), Gaps = 28/233 (12%)
Query: 69  QLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXX 128
           QLTE+    +FAA +R    A    +VG N V++ AA K GI V N P            
Sbjct: 69  QLTEE----IFAAANRL--IAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVI 122
Query: 129 XXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
                  RRI        AG   GW         ++G+T+G++G G IGS    +  E  
Sbjct: 123 GEIIMLMRRIFPRSVSAHAG---GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNL-AESL 178
Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            M + YYD   + +L+     YG             K A+S+DE+L+ +DV+SLH    K
Sbjct: 179 GMTVRYYD--TSDKLQ-----YGNV-----------KPAASLDELLKTSDVVSLHVPSSK 220
Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           +T  LI + +L  MKK A L+N +RG  +D  AL + L++  +    +DVF V
Sbjct: 221 STSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPV 273

>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333

Iteration: 1
 Score = 90.9 bits (224), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 118/255 (46%), Gaps = 24/255 (9%)
Query: 64  DGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXX 123
           DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI + N P       
Sbjct: 46  DGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAI 105
Query: 124 XXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM 183
                       R + +    ++AG Y+      F+G  L  QTVGV+G G IG   A  
Sbjct: 106 AEFALTDTLYLLRNMGKVQAQLQAGDYEK--AGTFIGKELGQQTVGVMGTGHIGQV-AIK 162
Query: 184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH 243
           + +GF   +I YD Y                   G+ P       S++++ +++DVI LH
Sbjct: 163 LFKGFGAKVIAYDPY----------------PMKGDHPDF--DYVSLEDLFKQSDVIDLH 204
Query: 244 -PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV- 301
            P +++ T H+IN+     MK  AI++N +R  +ID  A++ +LK   +  VG+D +E  
Sbjct: 205 VPGIEQNT-HIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYE 263
Query: 302 TELGFSSFKHISTQD 316
           TE   +  KH S +D
Sbjct: 264 TEDLLNLAKHGSFKD 278

>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 18/217 (8%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
             + +VN +RGPVI + AL+  LK   +   GLDV E
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284

>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 18/217 (8%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
             + +VN +RGPVI + AL+  LK   +   GLDV E
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284

>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348

Iteration: 1
 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/217 (28%), Positives = 100/217 (46%), Gaps = 18/217 (8%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G                  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141
Query: 148 GLYDGW-LPNLFVGNLL---KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +   +L +G      +G  +G +G G I    AR  V G  M L+YYD+  A   
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPA--- 198
Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 199 -----------DAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247
Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
             + +VN +RGPVI + AL+  LK   +   GLDV E
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284

>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528

Iteration: 1
 Score = 89.0 bits (219), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 97/219 (44%), Gaps = 34/219 (15%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 67  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 125
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y         
Sbjct: 126 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 173
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
                         V+  RA+       S+D++L  AD IS+H      T  LI+KE LA
Sbjct: 174 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 219
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
             K   I+VN +RG ++DE AL + +    +   GLDVF
Sbjct: 220 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF 258

>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529

Iteration: 1
 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 69/219 (31%), Positives = 97/219 (44%), Gaps = 34/219 (15%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   VG +NVDV+AA   G+ V N P                   R+I  AD  +R 
Sbjct: 68  KIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLR- 126
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
                W  + F G  + G+TVGV+G GRIG   A+  +  F   ++ YD Y         
Sbjct: 127 --EHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR-IAAFGAYVVAYDPY--------- 174
Query: 208 TAYGQFLKANGEQPVTWKRAS-------SMDEVLREADVISLHPVLDKTTYHLINKERLA 260
                         V+  RA+       S+D++L  AD IS+H      T  LI+KE LA
Sbjct: 175 --------------VSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALA 220
Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
             K   I+VN +RG ++DE AL + +    +   GLDVF
Sbjct: 221 KTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF 259

>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 73/254 (28%), Positives = 113/254 (44%), Gaps = 23/254 (9%)
Query: 46  KKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAA 105
           +K  LS E++IA + D C+G+I +        +  A  +   +       G +NVD+ AA
Sbjct: 52  EKQNLSKEELIAELQD-CEGLIVRSATKVTADVINAAEKL--QVVGRAGTGVDNVDLEAA 108
Query: 106 NKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
            + GI V NTP                   R+I +A   M+ G    W    F+G  L G
Sbjct: 109 TRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDG---KWERKKFMGTELNG 165
Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
           +T+G++G GRIG   A  M + F M  I YD   +  +     ++G              
Sbjct: 166 KTLGILGLGRIGREVATRM-QSFGMKTIGYDPIISPEVS---ASFG-------------V 208
Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
           +   ++E+    D I++H  L  +T  L+N    A  KK   +VNC+RG ++DE AL+  
Sbjct: 209 QQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRA 268
Query: 286 LKQNPMFRVGLDVF 299
           L+        LDVF
Sbjct: 269 LQSGQCAGAALDVF 282

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/282 (28%), Positives = 123/282 (43%), Gaps = 19/282 (6%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 10  KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 67
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S M+VG +++ ++   K GI VG TP V                 R
Sbjct: 68  RILDA-AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 126
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR + + F +    Y 
Sbjct: 127 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 185
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             Q  R E+      +F+              S  E+  ++D I +   L   T  L NK
Sbjct: 186 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 230
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
           +    MK+ A+ +N SRG V+++  L + L    +   GLDV
Sbjct: 231 DFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDV 272

>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 17/208 (8%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEVTE 303
           V+DE A++  L++  +     DVFE+ +
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMED 267

>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 97/208 (46%), Gaps = 17/208 (8%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y++               + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYHE--------------AKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEVTE 303
           V+DE A++  L++  +     DVFE+ +
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMED 267

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 85.9 bits (211), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 69/247 (27%), Positives = 109/247 (44%), Gaps = 24/247 (9%)
Query: 54  DIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVG 113
           D +AL  +    V+G         L  AL +   +  S+ +VG + VD+    + G+ V 
Sbjct: 57  DFLALQAESIRAVVGNSNAGADAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVT 114
Query: 114 NTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA 173
           NTP V                 RRI E D+++R G +     +  +     G+ VG+IG 
Sbjct: 115 NTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWK--FGDFKLTTKFSGKRVGIIGL 172
Query: 174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV 233
           GRIG A A    E F   + Y+     +R +K  T Y  +               S+ E+
Sbjct: 173 GRIGLAVAER-AEAFDCPISYF-----SRSKKPNTNYTYY--------------GSVVEL 212
Query: 234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR 293
              +D++ +   L   T H+IN+E +  +  + +L+N  RGP +DE  LV  L +  +  
Sbjct: 213 ASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGG 272
Query: 294 VGLDVFE 300
            GLDVFE
Sbjct: 273 AGLDVFE 279

>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334

Iteration: 1
 Score = 85.1 bits (209), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 61/205 (29%), Positives = 94/205 (45%), Gaps = 17/205 (8%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 78  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 137
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 138 R-FYGTGLDNATVGFLGXGAIGLAXADRL-QGWGATLQYH--------------AAKALD 181
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 182 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 240
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFE 300
           V+DE A++  L++  +     DVFE
Sbjct: 241 VVDEAAVLAALERGQLGGYAADVFE 265

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 85.1 bits (209), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 63/217 (29%), Positives = 102/217 (47%), Gaps = 20/217 (9%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K     +VG++++D++   K GI V + P                   +R+   ++  R 
Sbjct: 66  KLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKRIED--RV 123
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
              +    +  +   L   T+GVIG GRIGS  A   +  F   ++ YD+ +   L++  
Sbjct: 124 KKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAXYGL-AFGXKVLCYDVVKREDLKEKG 182
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
             Y                 +S+DE+L+E+DVISLH    K T+H IN+ER++  K    
Sbjct: 183 CVY-----------------TSLDELLKESDVISLHVPYTKETHHXINEERISLXKDGVY 225
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTEL 304
           L+N +RG V+D  AL    ++     +GLDVFE  E+
Sbjct: 226 LINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEI 262

>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329

Iteration: 1
 Score = 84.7 bits (208), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEVTE 303
           V+DE A++  L++  +     DVFE+ +
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMED 267

>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 61/208 (29%), Positives = 96/208 (46%), Gaps = 17/208 (8%)
Query: 96  GYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWLP 155
           G++N DV+A    G+ +   P +                 R +  AD F+R+G + GW P
Sbjct: 77  GFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGQFRGWQP 136
Query: 156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK 215
             F G  L   TVG +G G IG A A  + +G+   L Y+                + L 
Sbjct: 137 R-FYGTGLDNATVGFLGMGAIGLAMADRL-QGWGATLQYH--------------ARKALD 180
Query: 216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP 275
              EQ +  ++ +   E+   +D I L   L+  T HL+N E LA ++  A+LVN  RG 
Sbjct: 181 TQTEQRLGLRQVAC-SELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGS 239
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFEVTE 303
           V+DE A++  L++  +     DVFE+ +
Sbjct: 240 VVDEAAVLAALERGQLGGYAADVFEMED 267

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 82.4 bits (202), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 77/282 (27%), Positives = 121/282 (42%), Gaps = 19/282 (6%)
Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           +V  T+ +P    + L    DC VE     + I + E    + G    G++  L++   +
Sbjct: 8   KVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAG--AHGLLCLLSDHVDK 65
Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXR 136
            +  A + A  K  S  +VG +++ ++   K GI VG TP V                 R
Sbjct: 66  RILDA-AGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCR 124
Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR + + F +    Y 
Sbjct: 125 RLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRL-KPFGVQRFLYT 183
Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
             Q  R E+      +F+              S  E+  ++D I +   L   T  L NK
Sbjct: 184 GRQP-RPEEAAEFQAEFV--------------STPELAAQSDFIVVACSLTPATEGLCNK 228
Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
           +     K+ A+ +N SRG V+++  L + L    +   GLDV
Sbjct: 229 DFFQKXKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDV 270

>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 100/219 (45%), Gaps = 22/219 (10%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           VG + VD+  A +  I V  TPGV                 RR+ + D  +R G +    
Sbjct: 102 VGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALXLAVLRRVGDGDRLVREGRWAAG- 160
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
             L +G+  KG+ +GV+G G+IG A A    E F  ++ Y++           T  G   
Sbjct: 161 EQLPLGHSPKGKRIGVLGLGQIGRALASR-AEAFGXSVRYWNRS---------TLSG--- 207
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
                  V W    S  ++ R++DV+++       T ++++   L  +  E I+VN +RG
Sbjct: 208 -------VDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG 260
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEVTELGFSSFKHIS 313
            V+DE AL+E LK   +   GLDVF V E    S  H +
Sbjct: 261 NVVDEDALIEALKSGTIAGAGLDVF-VNEPAIRSEFHTT 298

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 94/212 (44%), Gaps = 22/212 (10%)
Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRA 147
           K  +   +G +N+D   A K  I V   PG                  R++  +    ++
Sbjct: 70  KIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKS 129
Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G++         G  L G+T+G++G GRIG+    ++     M ++ YD+       + +
Sbjct: 130 GIFKK-----IEGLELAGKTIGIVGFGRIGTKVG-IIANAMGMKVLAYDILDIREKAEKI 183
Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
            A                +A S++E+L+ +DVISLH  + K    +I+  +   MK   I
Sbjct: 184 NA----------------KAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVI 227
Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           +VN SR   ++  AL++++K+  ++    DVF
Sbjct: 228 IVNTSRAVAVNGKALLDYIKKGKVYAYATDVF 259

>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           +N SRG V+D  AL + L    +    +DVF
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVF 266

>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 70.9 bits (172), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 93/211 (44%), Gaps = 22/211 (10%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 78  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 137
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           +++      F     +G+ +G+IG G IG+    ++ E   M + +YD+     L     
Sbjct: 138 VWNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----- 188
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L
Sbjct: 189 -------GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLL 235
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           +N SRG V+D  AL + L    +    +DVF
Sbjct: 236 INASRGTVVDIPALADALASKHLAGAAIDVF 266

>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409

Iteration: 1
 Score = 69.3 bits (168), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 22/205 (10%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G N VD++AA K GI V N P                   R + EA+     G+++   
Sbjct: 83  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA 142
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              F     +G+ +G+IG G IG+    ++ E   M + +YD+     L           
Sbjct: 143 AGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGMYVYFYDIENKLPL----------- 187
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
             N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L+N SRG
Sbjct: 188 -GNATQ------VQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRG 240
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVF 299
            V+D  AL + L    +    +DVF
Sbjct: 241 TVVDIPALCDALASKHLAGAAIDVF 265

>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 41/134 (30%), Positives = 69/134 (51%), Gaps = 19/134 (14%)
Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
           TVGV+G GRIG   A++   G    +I  D+++   +E + T                  
Sbjct: 148 TVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCTQV---------------- 190
Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
             S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG ++D  A++E +
Sbjct: 191 --SLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248
Query: 287 KQNPMFRVGLDVFE 300
           +   +   G DV +
Sbjct: 249 ESGKLGGYGCDVLD 262

>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352

Iteration: 1
 Score = 65.5 bits (158), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 22/149 (14%)
Query: 155 PNLFVGNLLKGQTVGVIGAGRIG---SAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
           PN  +G +LKGQT+G+ G G+IG   + Y R     F MN++ +    +           
Sbjct: 150 PNFGIGRVLKGQTLGIFGYGKIGQLVAGYGR----AFGMNVLVWGRENSK---------- 195
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
           +  +A+G     +  A S D +  ++DV+S+H  L+  T  +I    L  MK  A+ VN 
Sbjct: 196 ERARADG-----FAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMKPTALFVNT 250
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SR  +++E  +V  L +       +DVFE
Sbjct: 251 SRAELVEENGMVTALNRGRPGMAAIDVFE 279

>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 14/114 (12%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 162 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 207
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +
Sbjct: 208 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAI 261

>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365

Iteration: 1
 Score = 64.3 bits (155), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 14/114 (12%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           ++G+T+  IGAGRIG      +V      L+YYD YQA             L  + E+ V
Sbjct: 163 IEGKTIATIGAGRIGYRVLERLVPFNPKELLYYD-YQA-------------LPKDAEEKV 208
Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV 276
             +R  +++E++ +AD+++++  L   T  LINKE L+  KK A LVN +RG +
Sbjct: 209 GARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNTARGAI 262

>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 22/211 (10%)
Query: 89  AFSNMAVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAG 148
           A    A+G N VD++AA K GI V N P                   R + EA+     G
Sbjct: 72  AIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG 131
Query: 149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT 208
           + +      F     +G+ +G+IG G IG+    ++ E     + +YD+     L     
Sbjct: 132 VGNKLAAGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----- 182
Query: 209 AYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAIL 268
                   N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L
Sbjct: 183 -------GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLL 229
Query: 269 VNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           +N SRG V+D  AL + L    +    +DVF
Sbjct: 230 INASRGTVVDIPALADALASKHLAGAAIDVF 260

>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410

Iteration: 1
 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 22/205 (10%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G N VD++AA K GI V N P                   R + EA+     G+++   
Sbjct: 84  IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVWNKLA 143
Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              F     +G+ +G+IG G IG+    ++ E     + +YD+     L           
Sbjct: 144 AGSFEA---RGKKLGIIGYGHIGTQLG-ILAESLGXYVYFYDIENKLPL----------- 188
Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
             N  Q         + ++L  +DV+SLH   + +T +    + ++  K  ++L+N SRG
Sbjct: 189 -GNATQ------VQHLSDLLNXSDVVSLHVPENPSTKNXXGAKEISLXKPGSLLINASRG 241
Query: 275 PVIDEVALVEHLKQNPMFRVGLDVF 299
            V+D  AL + L    +    +DVF
Sbjct: 242 TVVDIPALCDALASKHLAGAAIDVF 266

>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381

Iteration: 1
 Score = 62.0 bits (149), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/145 (30%), Positives = 72/145 (49%), Gaps = 24/145 (16%)
Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
           G  L+ +T+G++G G +GS   +  +E   +  +  D  +A R ++     G F      
Sbjct: 114 GFSLRDRTIGIVGVGNVGSRL-QTRLEALGIRTLLCDPPRAARGDE-----GDF------ 161
Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGP 275
                    ++DE+++EADV++ H  L K     T HL ++  +  +K  AIL+N  RGP
Sbjct: 162 --------RTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213
Query: 276 VIDEVALVEHLKQNPMFRVGLDVFE 300
           V+D  AL+  L       V LDV+E
Sbjct: 214 VVDNAALLARLNAGQPLSVVLDVWE 238

>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 17/139 (12%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 168 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 214
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 215 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 271
Query: 282 LVEHLKQNPMFRVGLDVFE 300
           +V+ ++   +     DV++
Sbjct: 272 VVDAVESGHIGGYSGDVWD 290

>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 42/139 (30%), Positives = 74/139 (53%), Gaps = 17/139 (12%)
Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQP 221
           L+G+T+G +GAGRIG    + + + F  NL+Y+D  Q A  LEK   A            
Sbjct: 162 LEGKTIGTVGAGRIGKLLLQRL-KPFGCNLLYHDRLQMAPELEKETGA------------ 208
Query: 222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA 281
              K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG +++  A
Sbjct: 209 ---KFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARGAIMERQA 265
Query: 282 LVEHLKQNPMFRVGLDVFE 300
           +V+ ++   +     DV++
Sbjct: 266 VVDAVESGHIGGYSGDVWD 284

>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380

Iteration: 1
 Score = 57.4 bits (137), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 46/76 (60%), Gaps = 4/76 (5%)
Query: 229 SMDEVLREADVISLHPVLDK----TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE 284
           S++ +L EADVISLH  L++     T HL+++ RLA ++    LVN SRG V+D  AL  
Sbjct: 160 SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQALRR 219
Query: 285 HLKQNPMFRVGLDVFE 300
            L+      V LDV+E
Sbjct: 220 LLEGGADLEVALDVWE 235

>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 153
            +G ++VD+ AA    I V                       R  + + ++ R G   GW
Sbjct: 121 GIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GW 177
Query: 154 LPNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
                V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V    
Sbjct: 178 NIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK-- 231
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
                  E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN 
Sbjct: 232 -------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNT 282
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           +RG + D  A+V  L+   +     DV+
Sbjct: 283 ARGKLCDRDAIVRALESGRLAGYAGDVW 310

>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 89/208 (42%), Gaps = 20/208 (9%)
Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGW 153
            +G ++VD+ AA    I V                       R  + + ++ R G   GW
Sbjct: 122 GIGSDHVDLQAAIDNNITVAEVTYCNSNSVAEHVVMMVLGLVRNYIPSHDWARNG---GW 178
Query: 154 LPNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG 211
                V     ++G  VG + AGRIG    R++   F M+L Y D +   RL + V    
Sbjct: 179 NIADCVARSYDVEGMHVGTVAAGRIGLRVLRLLAP-FDMHLHYTDRH---RLPEAVEK-- 232
Query: 212 QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
                  E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A LVN 
Sbjct: 233 -------ELNLTWH--ATREDMYGACDVVTLNCPLHPETEHMINDETLKLFKRGAYLVNT 283
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           +RG + D  A+V  L+   +     DV+
Sbjct: 284 ARGKLCDRDAIVRALESGRLAGYAGDVW 311

>pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303

Iteration: 1
 Score = 55.8 bits (133), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 74/168 (44%), Gaps = 33/168 (19%)
Query: 136 RRIVEADEFMRAGLY--DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI 193
           +RI++  E  + G Y  D  +P      L++G+ V V+G G IG                
Sbjct: 99  KRIIQYGEKXKRGDYGRDVEIP------LIQGEKVAVLGLGEIG---------------- 136
Query: 194 YYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLHPVLDKTTY 251
                  TR+ K + A G  ++     P    W+  +S++E LREA        L+K T 
Sbjct: 137 -------TRVGKILAALGAQVRGFSRTPKEGPWRFTNSLEEALREARAAVCALPLNKHTR 189
Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
            L+  + LA   ++A+ VN  R  V+D   ++  LK+ P F    DV+
Sbjct: 190 GLVKYQHLALXAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 237

>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393

Iteration: 1
 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 20/207 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 122 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 178
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 179 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 229
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 230 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 283
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF 299
           RG + D  A+   L+   +     DV+
Sbjct: 284 RGKLCDRDAVARALESGRLAGYAGDVW 310

>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401

Iteration: 1
 Score = 52.4 bits (124), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 20/207 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF 299
           RG + D  A+   L+   +     DV+
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVW 311

>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 20/207 (9%)
Query: 95  VGYNNVDVNAANKYGIAVGNTPGVXXXXXXXXXXXXXXXXXRRIVEADEFMRAGLYDGWL 154
           +G ++VD+ +A    + V                       R  + + E+ R G   GW 
Sbjct: 123 IGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKG---GWN 179
Query: 155 PNLFVGNL--LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
               V +   L+   VG + AGRIG A  R +   F ++L Y D +   RL + V     
Sbjct: 180 IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAP-FDVHLHYTDRH---RLPESV----- 230
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                 E  +TW   ++ +++    DV++L+  L   T H+IN E L   K+ A +VN +
Sbjct: 231 ----EKELNLTWH--ATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTA 284
Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVF 299
           RG + D  A+   L+   +     DV+
Sbjct: 285 RGKLCDRDAVARALESGRLAGYAGDVW 311

>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%)
Query: 246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           L  TT+HL + E     K++ +L+N  RGP +D  AL+  L  + +    LDV E
Sbjct: 201 LTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTE 255

>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 43/153 (28%), Positives = 69/153 (45%), Gaps = 21/153 (13%)
Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
           W  + + G  LKG+T+ ++G G IG   A    + F M ++       +R  +    + Q
Sbjct: 130 WQSHPYQG--LKGRTLLILGTGSIGQHIAHTG-KHFGMKVL-----GVSRSGRERAGFDQ 181
Query: 213 FLKANGEQPVTWKRASSMDEVLREADVI-SLHPVLDKTTYHLINKERLATMKKEAILVNC 271
             +             +++++L +ADVI S+ P   + T+HL    R    K  AIL N 
Sbjct: 182 VYQL-----------PALNKMLAQADVIVSVLPA-TRETHHLFTASRFEHCKPGAILFNV 229
Query: 272 SRGPVIDEVALVEHLKQNPMFRVGLDVFEVTEL 304
            RG  I+E  L+  L+   +    LDVFE   L
Sbjct: 230 GRGNAINEGDLLTALRTGKLGMAVLDVFEQEPL 262

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	342
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	2e-91
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	3e-91
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	9e-89
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	5e-88
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	6e-88
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	1e-87
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	8e-82
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-81
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	4e-78
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	3e-76
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	1e-75
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	1e-75
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	2e-75
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	3e-75
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	4e-75
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	2e-74
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	2e-71
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	6e-71
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	4e-70
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	3e-68
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	1e-67
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	4e-66
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	8e-66
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	3e-63
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	1e-62
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	7e-62
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	1e-61
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	2e-54
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	2e-53
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	6e-53
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	6e-27
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	1e-24
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	5e-13

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score =  275 bits (706), Expect = 2e-91
 Identities = 105/290 (36%), Positives = 162/290 (55%), Gaps = 27/290 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +V  T+ +P    I +L E +  VE+    +  +  E ++  + +  D ++  L+E  
Sbjct: 2   KPKVFITREIP-EVGIKML-EDEFEVEVW-GDEKEIPREILLKKVKE-VDALVTMLSERI 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +F    +   +  +N AVGY+N+D+  A K GI V NTP VLT+ TA+LA +L LA 
Sbjct: 58  DKEVFENAPKL--RIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLAT 115

Query: 135 ARRIVEADEFMRAG----LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           AR +V+ D F+R+G        W P  F+G  + G+T+G+IG GRIG A A+   +GF M
Sbjct: 116 ARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRA-KGFNM 174

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
            ++YY   +   +E+ + A                    ++++LRE+D + L   L + T
Sbjct: 175 RILYYSRTRKEEVERELNA----------------EFKPLEDLLRESDFVVLAVPLTRET 218

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           YHLIN+ERL  MKK AIL+N +RG V+D  ALV+ LK+  +   GLDVFE
Sbjct: 219 YHLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFE 268

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score =  274 bits (704), Expect = 3e-91
 Identities = 73/286 (25%), Positives = 133/286 (46%), Gaps = 20/286 (6%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLPEA-AMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P  +T  TAE+A  L L +
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGS 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG A A+   +GF M++ Y
Sbjct: 116 ARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDY 174

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           +D ++                ++ E         S+D +L  +   SL+      T +  
Sbjct: 175 FDTHR--------------ASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 220

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           NK  + ++ + AI+VN +RG ++D   +V  L+   +   G DVF 
Sbjct: 221 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFA 266

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score =  268 bits (688), Expect = 9e-89
 Identities = 85/292 (29%), Positives = 129/292 (44%), Gaps = 25/292 (8%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
           P    +V  T+ +P       L    DC VE        +  +++   +     G++  L
Sbjct: 5   PVRLMKVFVTRRIP-AEGRVALARAADCEVEQ-WDSDEPIPAKELERGVAG-AHGLLCLL 61

Query: 71  TEDWGETLFAALSRAGG--KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAA 128
           ++   + +  A   AG   K  S M+VG +++ ++   K GI VG TP VLT+TTAELA 
Sbjct: 62  SDHVDKRILDA---AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAV 118

Query: 129 SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF 188
           SL L   RR+ EA E ++ G +  W P    G  L   TVG+IG GRIG A AR +   F
Sbjct: 119 SLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLK-PF 177

Query: 189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK 248
            +    Y         +    +             +    S  E+  ++D I +   L  
Sbjct: 178 GVQRFLYT--GRQPRPEEAAEFQ----------AEFV---STPELAAQSDFIVVACSLTP 222

Query: 249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
            T  L NK+    MK+ A+ +N SRG V+++  L + L    +   GLDV  
Sbjct: 223 ATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTS 274

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score =  265 bits (681), Expect = 5e-88
 Identities = 98/284 (34%), Positives = 153/284 (53%), Gaps = 29/284 (10%)

Query: 17  RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           RV+ T+ +P  + ++ L E+    E+   +   L   +++  +     G+I  + +    
Sbjct: 2   RVLVTRTLP-GKALDRLRERGL--EVEVHRGLFLPKAELLKRVEG-AVGLIPTVEDRIDA 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
            +         K  +  +VG ++VD+ AA + GI V +TPGVLTE TA+L  +L LA AR
Sbjct: 58  EVMDRAKGL--KVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVAR 115

Query: 137 RIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196
           R+VE   + R GL+  W P L +G  L+G T+G++G GRIG A A+     F M ++Y+ 
Sbjct: 116 RVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRA-LAFGMRVVYHA 174

Query: 197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINK 256
                R  K               P  +    S++E+L+EADV+SLH  L   T+ L+N+
Sbjct: 175 -----RTPK-------------PLPYPFL---SLEELLKEADVVSLHTPLTPETHRLLNR 213

Query: 257 ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           ERL  MK+ AIL+N +RG ++D  ALVE L+   +F  GLDV +
Sbjct: 214 ERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTD 256

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score =  266 bits (682), Expect = 6e-88
 Identities = 80/286 (27%), Positives = 128/286 (44%), Gaps = 23/286 (8%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             ++V T  +     + LL    C +    Q  + L+ E+I+    D    ++  + +  
Sbjct: 2   LPKLVITHRVHE-EILQLL-APHCELITN-QTDSTLTREEILRRCRD-AQAMMAFMPDRV 57

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
                 A      +       G++N DV+A    G+ +   P +LT  TAELA  L++  
Sbjct: 58  DADFLQACPEL--RVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGL 115

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            R +  AD F+R+G + GW P  F G  L   TVG +G G IG A A  +  G+   L Y
Sbjct: 116 GRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGMGAIGLAMADRLQ-GWGATLQY 173

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           ++                 L    EQ +  ++  +  E+   +D I L   L+  T HL+
Sbjct: 174 HEAKA--------------LDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLV 218

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           N E LA ++  A+LVN  RG V+DE A++  L++  +     DVFE
Sbjct: 219 NAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFE 264

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score =  266 bits (682), Expect = 1e-87
 Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 22/286 (7%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
             +    +       I   + Q   +E+   + T+L+   I +      + +    TE  
Sbjct: 28  IQKAFLCRRFTPA--IEAELRQRFDLEV-NLEDTVLTPSGIASRAHG-AEVLFVTATEAI 83

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +   L   G K  + ++VGY+++D+ AA   GI V +TP VL++  AE+A  L L A
Sbjct: 84  TAEVIRKLQ-PGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNA 142

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RR  EAD  +R+G + GW P   +G  L G+ +G+ G GRIG A A     GF + + Y
Sbjct: 143 CRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRA-RGFGLAIHY 201

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           ++  + +   +    Y                  ++D +L  +D+  +           +
Sbjct: 202 HNRTRLSHALEEGAIY----------------HDTLDSLLGASDIFLIAAPGRPELKGFL 245

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           + +R+A + + A+++N SRG +I++ AL+E L+   +F  GLDVF 
Sbjct: 246 DHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFA 291

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score =  250 bits (642), Expect = 8e-82
 Identities = 85/289 (29%), Positives = 134/289 (46%), Gaps = 30/289 (10%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V     M     +  L ++   VEI        S E++  +IG   DG+I   T   
Sbjct: 2   RPKVGVLLKMKRE-ALEEL-KKYADVEIILY----PSGEELKGVIGR-FDGIIVSPTTKI 54

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +     R   K  S  + GY+N+D+  A K GI V    G+L+E  AE    L +  
Sbjct: 55  TREVLENAERL--KVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINL 112

Query: 135 ARRIVEADEFMRAGLYDGWLP---NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMN 191
            R+I  AD+F+R G ++              L G+ VG++G G IG A AR +   F + 
Sbjct: 113 MRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRL-IPFGVK 171

Query: 192 LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY 251
           L Y+  ++   +EK + A                R   +DE+L ++D++ L   L + TY
Sbjct: 172 LYYWSRHRKVNVEKELKA----------------RYMDIDELLEKSDIVILALPLTRDTY 215

Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           H+IN+ER+  ++    LVN  RG ++DE A+ E +KQ  +     DVFE
Sbjct: 216 HIINEERVKKLEG-KYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFE 263

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score =  251 bits (642), Expect = 1e-81
 Identities = 71/277 (25%), Positives = 119/277 (42%), Gaps = 25/277 (9%)

Query: 34  IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGG 87
            +Q   V            + +        + +I      G  +  W   L + L  +  
Sbjct: 23  FQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLP-SSL 81

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K F+    G++ +D++A N+ G+A  N+ G     T++LA  L L+  R    ++   R 
Sbjct: 82  KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAART 141

Query: 148 GLYDGWLPNLF----VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRL 203
           G  + +           +  +G  +G +G G I    AR  V G  M L+YYD+      
Sbjct: 142 GDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP---- 197

Query: 204 EKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK 263
                       A  E+ +  +R  S++E+ R +D +S+     K T+HLI++   A MK
Sbjct: 198 ----------ADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEAFFAAMK 247

Query: 264 KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
             + +VN +RGPVI + AL+  LK   +   GLDV E
Sbjct: 248 PGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHE 284

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score =  241 bits (618), Expect = 4e-78
 Identities = 75/290 (25%), Positives = 124/290 (42%), Gaps = 29/290 (10%)

Query: 11  NPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL 70
             N K  ++  +PM    ++   ++++  V    Q         + A +      V    
Sbjct: 26  FRNVKPDLLLVEPMM--PFVMDELQRNYSVHRLYQA---ADRPALEAALPS-IRAVATGG 79

Query: 71  TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASL 130
                      L        +   VG + VD+  A +  I V  TPGVL +  A+L  +L
Sbjct: 80  GAGLSNEWMEKLPSL--GIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIAL 137

Query: 131 SLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
            LA  RR+ + D  +R G +      L +G+  KG+ +GV+G G+IG A A    E F M
Sbjct: 138 MLAVLRRVGDGDRLVREGRWAAG-EQLPLGHSPKGKRIGVLGLGQIGRALAS-RAEAFGM 195

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
           ++ Y++     R                   V W    S  ++ R++DV+++       T
Sbjct: 196 SVRYWN-----RSTL--------------SGVDWIAHQSPVDLARDSDVLAVCVAASAAT 236

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
            ++++   L  +  E I+VN +RG V+DE AL+E LK   +   GLDVF 
Sbjct: 237 QNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFV 286

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score =  236 bits (605), Expect = 3e-76
 Identities = 79/286 (27%), Positives = 130/286 (45%), Gaps = 29/286 (10%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
              V+   PM    ++   +++  ++    +  T  +  D +AL  +    V+G      
Sbjct: 23  AIGVLMMCPMST--YLEQELDKRFKL---FRYWTQPAQRDFLALQAESIRAVVGNSNAGA 77

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              L  AL +   +  S+ +VG + VD+    + G+ V NTP VLT+  A+LA  L LA 
Sbjct: 78  DAELIDALPKL--EIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAV 135

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
            RRI E D+++R G +     +  +     G+ VG+IG GRIG A A    E F   + Y
Sbjct: 136 LRRICECDKYVRRGAWKFG--DFKLTTKFSGKRVGIIGLGRIGLAVAE-RAEAFDCPISY 192

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           +      R +K                  +    S+ E+   +D++ +   L   T H+I
Sbjct: 193 FS-----RSKK--------------PNTNYTYYGSVVELASNSDILVVACPLTPETTHII 233

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           N+E +  +  + +L+N  RGP +DE  LV  L +  +   GLDVFE
Sbjct: 234 NREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFE 279

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score =  234 bits (599), Expect = 1e-75
 Identities = 92/287 (32%), Positives = 145/287 (50%), Gaps = 28/287 (9%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           + +V+   P+   + I +L +    V      +     + ++ L+ D  + +I +     
Sbjct: 3   RMKVLVAAPLH-EKAIQVLKDAGLEVIY----EEYPDEDRLVELVKD-VEAIIVRSKPKV 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
              +  +  +   K  +   VG +N+DV AA + GI V N P   + + AELA  L  + 
Sbjct: 57  TRRVIESAPKL--KVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSV 114

Query: 135 ARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY 194
           AR+I  AD  MR G    W     +G  L+G+T+G+IG GRIG   A++      MN++ 
Sbjct: 115 ARKIAFADRKMREG---VWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIA-NALGMNILL 170

Query: 195 YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI 254
           YD Y     E+                  +     ++ +L+E+DV+++H  L ++TYHLI
Sbjct: 171 YDPYPN---EERAKEVN----------GKFV---DLETLLKESDVVTIHVPLVESTYHLI 214

Query: 255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           N+ERL  MKK AIL+N SRGPV+D  ALV+ LK+  +   GLDVFE 
Sbjct: 215 NEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEE 261

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score =  235 bits (601), Expect = 1e-75
 Identities = 72/294 (24%), Positives = 125/294 (42%), Gaps = 27/294 (9%)

Query: 12  PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT 71
            +    V        T  + +L +    V  C       S ++I   + ++  G +   T
Sbjct: 18  GSHMPLVALLDGRDCTVEMPIL-KDVATVAFCDA----QSTQEIHEKVLNEAVGALMYHT 72

Query: 72  EDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLS 131
                           +    +  G++N+D+ +A   GIAV N P    E TA+      
Sbjct: 73  ITLTREDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHI 130

Query: 132 LAAARRIVEADEFMRAGL----YDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG 187
           L   RR     + +R G      +           ++G+T+G+IG GR+G A A    + 
Sbjct: 131 LNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KA 189

Query: 188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD 247
           F  N+++YD Y               L    E+ +  +R S++ ++L  +D ++LH  L+
Sbjct: 190 FGFNVLFYDPY---------------LSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLN 234

Query: 248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           +  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    LDV E 
Sbjct: 235 EHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHES 288

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score =  232 bits (595), Expect = 3e-75
 Identities = 55/251 (21%), Positives = 96/251 (38%), Gaps = 28/251 (11%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           +    + G     V   L         A + R   K    +  G +++   +     + V
Sbjct: 19  KYFKIVRGGDLGNVEAALVSRITAEELAKMPRL--KFIQVVTAGLDHLPWESIPP-HVTV 75

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
               G   +  AE A +L LA  +RI++  E M+ G Y   +       L++G+ V V+G
Sbjct: 76  AGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE----IPLIQGEKVAVLG 131

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG+   +++       +  +                            W+  +S++E
Sbjct: 132 LGEIGTRVGKIL-AALGAQVRGFSRTPK--------------------EGPWRFTNSLEE 170

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
            LREA        L+K T  L+  + LA M ++A+ VN  R  V+D   ++  LK+ P F
Sbjct: 171 ALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQF 230

Query: 293 RVGLDVFEVTE 303
               DV+    
Sbjct: 231 IFASDVWWGRN 241

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score =  233 bits (597), Expect = 4e-75
 Identities = 73/248 (29%), Positives = 115/248 (46%), Gaps = 22/248 (8%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
            + +AL     DGV+     D+      AL+  G    S   VG +N+D+  A + G  +
Sbjct: 38  PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAKAKELGFQI 96

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE AA  +    R+    DE +             +G  ++ Q VGV+G
Sbjct: 97  TNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVG 153

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG  + ++M EGF   +I YD+++   LEK                       S+D+
Sbjct: 154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEKKGYYV-----------------DSLDD 195

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           + ++ADVISLH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F
Sbjct: 196 LYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIF 255

Query: 293 RVGLDVFE 300
              +DV+E
Sbjct: 256 GYAMDVYE 263

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score =  232 bits (593), Expect = 2e-74
 Identities = 59/288 (20%), Positives = 112/288 (38%), Gaps = 28/288 (9%)

Query: 47  KTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN 106
              L+ ++   +     D VI +      +       + G K       G +++D   A 
Sbjct: 31  PDYLNTKETAEMAAG-FDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAK 89

Query: 107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ 166
           + G  +   P       AELA + ++   R             +   +        ++  
Sbjct: 90  ELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK--VDAFMFSKEVRNC 147

Query: 167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR 226
           TVGV+G GRIG   A++   G    +I  D+++   +E + T                  
Sbjct: 148 TVGVVGLGRIGRVAAQIF-HGMGATVIGEDVFEIKGIEDYCT-Q---------------- 189

Query: 227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL 286
             S+DEVL ++D+I++H    K    ++ ++ L  MK  AILVNC+RG ++D  A++E +
Sbjct: 190 -VSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAV 248

Query: 287 KQNPMFRVGLDVFEV-TELGFSSFKHISTQDRATSCPKLTREWPIYDN 333
           +   +   G DV +    +     +    ++     P   +   +Y  
Sbjct: 249 ESGKLGGYGCDVLDGEASVFGKDLEGQKLEN-----PLFEKLVDLYPR 291

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score =  226 bits (577), Expect = 2e-71
 Identities = 60/274 (21%), Positives = 108/274 (39%), Gaps = 22/274 (8%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG-- 87
           +   +E +    + T  K           + D  D VI Q    W   L           
Sbjct: 59  LRKYLESNGHTLVVTSDKD-GPDSVFERELVD-ADVVISQPF--WPAYLTPERIAKAKNL 114

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRA 147
           K      +G ++VD+ +A    + V       + + AE    + L+  R  + + E+ R 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARK 174

Query: 148 GLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV 207
           G ++     +     L+   VG + AGRIG A  R +   F ++L Y D ++        
Sbjct: 175 GGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLA-PFDVHLHYTDRHR-------- 224

Query: 208 TAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI 267
                 L  + E+ +     ++ +++    DV++L+  L   T H+IN E L   K+ A 
Sbjct: 225 ------LPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAY 278

Query: 268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           +VN +RG + D  A+   L+   +     DV+  
Sbjct: 279 IVNTARGKLCDRDAVARALESGRLAGYAGDVWFP 312

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score =  222 bits (569), Expect = 6e-71
 Identities = 68/248 (27%), Positives = 113/248 (45%), Gaps = 22/248 (8%)

Query: 53  EDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAV 112
           E+ +       DG+    T  +   +F  +   G K  +   VG +N+D+ A  +YGI +
Sbjct: 36  ENTVEWAKG-FDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRL 94

Query: 113 GNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG 172
            N P       AE A + +L   R + +    ++AG Y+      F+G  L  QTVGV+G
Sbjct: 95  SNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE--KAGTFIGKELGQQTVGVMG 152

Query: 173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE 232
            G IG    ++  +GF   +I YD Y           Y                  S+++
Sbjct: 153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGDHPDFD-Y-----------------VSLED 193

Query: 233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF 292
           + +++DVI LH    +   H+IN+     MK  AI++N +R  +ID  A++ +LK   + 
Sbjct: 194 LFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLA 253

Query: 293 RVGLDVFE 300
            VG+D +E
Sbjct: 254 GVGIDTYE 261

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score =  219 bits (561), Expect = 4e-70
 Identities = 55/264 (20%), Positives = 103/264 (39%), Gaps = 28/264 (10%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGY 97
           +++         V +I   + D  D        D    +       G   K    ++ G 
Sbjct: 1   LDVYVNFPADGHVREIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGKRTKMIQAISAGV 60

Query: 98  NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNL 157
           +++DVN   +  +   N     + + AE A +L LA A+ I+E +E M+AG++       
Sbjct: 61  DHIDVNGIPENVVLCSNAGA-YSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--- 116

Query: 158 FVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN 217
               LL G+ +G++G G IG   A +  + F M +I Y         +         +  
Sbjct: 117 --TTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYT--------RSSVD-----QNV 160

Query: 218 GEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI 277
                      S  ++ R++D + +   L   T  ++N   LA  +K   +VN +R  V+
Sbjct: 161 DVISE------SPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVV 214

Query: 278 DEVALVEHLKQNPMFRVGLDVFEV 301
            +  ++  LK+        DV+  
Sbjct: 215 SKPDMIGFLKERSDVWYLSDVWWN 238

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score =  216 bits (553), Expect = 3e-68
 Identities = 56/267 (20%), Positives = 106/267 (39%), Gaps = 29/267 (10%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAALSRAGGKAFSNMA 94
           +            ++   I D    +I        +T +              K      
Sbjct: 42  QYIVTDDKEGPDCELEKHIPD-LHVLISTPFHPAYVTAE----RIKKAKNL--KLLLTAG 94

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D+ AA   G+ V    G    + AE      L   R  V     +  G ++   
Sbjct: 95  IGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWN-VA 153

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
              +    L+G+T+G +GAGRIG    + +   F  NL+Y+D  Q              +
Sbjct: 154 GIAYRAYDLEGKTIGTVGAGRIGKLLLQRLK-PFGCNLLYHDRLQ--------------M 198

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG 274
               E+    K    ++E+L + DVI ++  L + T  + NKE +  +KK  ++VN +RG
Sbjct: 199 APELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNARG 258

Query: 275 PVIDEVALVEHLKQNPMFRVGLDVFEV 301
            +++  A+V+ ++   +     DV++ 
Sbjct: 259 AIMERQAVVDAVESGHIGGYSGDVWDP 285

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score =  215 bits (549), Expect = 1e-67
 Identities = 70/291 (24%), Positives = 117/291 (40%), Gaps = 48/291 (16%)

Query: 29  WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-----QLTEDWGETLFAAL- 82
             +LL + + +V       T+  V  + A + D  + ++      ++T      L   L 
Sbjct: 20  CFSLLQDHEVKV----FNNTVKGVGQLAARVAD-VEALVLIRERTRVTRQ----LLDRLP 70

Query: 83  -----SRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
                S+ G            ++D+ A    G+ V    G      AEL  +L +AA RR
Sbjct: 71  KLKIISQTGRV----SRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRR 125

Query: 138 IVEADEFMRAG-------LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM 190
           I +    ++ G             PN  +G +LKGQT+G+ G G+IG   A      F M
Sbjct: 126 IPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYG-RAFGM 184

Query: 191 NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT 250
           N++                +G+       +   +  A S D +  ++DV+S+H  L+  T
Sbjct: 185 NVL---------------VWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDET 229

Query: 251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
             +I    L  MK  A+ VN SR  +++E  +V  L +       +DVFE 
Sbjct: 230 RSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFET 280

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score =  210 bits (538), Expect = 4e-66
 Identities = 85/282 (30%), Positives = 129/282 (45%), Gaps = 47/282 (16%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS-- 83
             +L +   +V      K  LS E++IA + D C+G+I     ++T D    +  A    
Sbjct: 40  RKILQDGGLQVVE----KQNLSKEELIAELQD-CEGLIVRSATKVTAD----VINAAEKL 90

Query: 84  ----RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIV 139
               RAG         G +NVD+ AA + GI V NTP   + + AEL   + +  AR+I 
Sbjct: 91  QVVGRAG--------TGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIP 142

Query: 140 EADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ 199
           +A   M+ G    W    F+G  L G+T+G++G GRIG   A  M + F M  I YD   
Sbjct: 143 QATASMKDG---KWERKKFMGTELNGKTLGILGLGRIGREVATRM-QSFGMKTIGYDPII 198

Query: 200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL 259
           +    +   ++G          V       ++E+    D I++H  L  +T  L+N    
Sbjct: 199 S---PEVSASFG----------VQQL---PLEEIWPLCDFITVHTPLLPSTTGLLNDNTF 242

Query: 260 ATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           A  KK   +VNC+RG ++DE AL+  L+        LDVF  
Sbjct: 243 AQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTE 284

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score =  209 bits (534), Expect = 8e-66
 Identities = 68/281 (24%), Positives = 127/281 (45%), Gaps = 47/281 (16%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAA---- 81
           I  L E+  +V+        +S E+++ +IG+  D ++     ++T+   + +       
Sbjct: 19  IKTLREKGIQVDY----MPEISKEELLNIIGN-YDIIVVRSRTKVTK---DVIEKGKKLK 70

Query: 82  -LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVE 140
            ++RAG        +G +N+D   A K  I V   PG  T++  EL   L +AAAR++  
Sbjct: 71  IIARAG--------IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYT 122

Query: 141 ADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA 200
           +    ++G    +      G  L G+T+G++G GRIG+    +      M ++ YD+   
Sbjct: 123 SMALAKSG---IF--KKIEGLELAGKTIGIVGFGRIGTKVGIIA-NAMGMKVLAYDILDI 176

Query: 201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA 260
               +                       S++E+L+ +DVISLH  + K    +I+  +  
Sbjct: 177 ---REKAEKIN----------AKA---VSLEELLKNSDVISLHVTVSKDAKPIIDYPQFE 220

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
            MK   I+VN SR   ++  AL++++K+  ++    DVF  
Sbjct: 221 LMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWN 261

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score =  208 bits (532), Expect = 3e-63
 Identities = 78/269 (28%), Positives = 122/269 (45%), Gaps = 27/269 (10%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 20  ALGDQVEVRW----VDGPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVAR 72

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P     + AE A +L LAA+R+I  AD  +R      
Sbjct: 73  AGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREH---T 129

Query: 153 WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQ 212
           W  + F G  + G+TVGV+G GRIG   A+ +   F   ++ YD         +V+    
Sbjct: 130 WKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYD--------PYVSP--A 178

Query: 213 FLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS 272
                G + ++       D++L  AD IS+H      T  LI+KE LA  K   I+VN +
Sbjct: 179 RAAQLGIELLSL------DDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAA 232

Query: 273 RGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           RG ++DE AL + +    +   GLDVF  
Sbjct: 233 RGGLVDEAALADAITGGHVRAAGLDVFAT 261

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score =  202 bits (517), Expect = 1e-62
 Identities = 68/277 (24%), Positives = 111/277 (40%), Gaps = 44/277 (15%)

Query: 40  VEICTQKKTILSVEDIIALIGDKCDGVI------GQLTEDWGETLFAA-----LSRAGGK 88
            E+ T          +   I D  D +I        +T+   E +  A     +  AG  
Sbjct: 39  HELITTSDKEGGNSVLDQHIPD-ADIIITTPFHPAYITK---ERIDKAKKLKLVVVAG-- 92

Query: 89  AFSNMAVGYNNVDVNAANKYG--IAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
                 VG +++D++  N+ G  I+V    G    + AE      L   R  V A E + 
Sbjct: 93  ------VGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQII 146

Query: 147 AGLYDGWLPNLFV--GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE 204
                 W           ++G+T+  IGAGRIG      +V  F    + Y  YQA   +
Sbjct: 147 NH---DWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLV-PFNPKELLYYDYQALPKD 202

Query: 205 KFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK 264
                         E+ V  +R  +++E++ +AD+++++  L   T  LINKE L+  KK
Sbjct: 203 A-------------EEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKK 249

Query: 265 EAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
            A LVN +RG +     +   L+   +   G DV+  
Sbjct: 250 GAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFP 286

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score =  202 bits (515), Expect = 7e-62
 Identities = 81/271 (29%), Positives = 118/271 (43%), Gaps = 45/271 (16%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAF 90
              T     L   D+I  I      +      QLTE+    +FAA +             
Sbjct: 38  TNVTHLPKALDKADLIKAISS-AHIIGIRSRTQLTEE----IFAAANRLIAVGCFS---- 88

Query: 91  SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY 150
               VG N V++ AA K GI V N P   T + AEL     +   RRI        AG  
Sbjct: 89  ----VGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAG-- 142

Query: 151 DGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY 210
            GW         ++G+T+G++G G IGS    +  E   M + YYD     +L+      
Sbjct: 143 -GWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLA-ESLGMTVRYYDTS--DKLQY----- 193

Query: 211 GQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVN 270
                 N +       A+S+DE+L+ +DV+SLH    K+T  LI + +L  MKK A L+N
Sbjct: 194 -----GNVKP------AASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLIN 242

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
            +RG  +D  AL + L++  +    +DVF V
Sbjct: 243 NARGSDVDLEALAKVLQEGHLAGAAIDVFPV 273

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score =  200 bits (512), Expect = 1e-61
 Identities = 67/268 (25%), Positives = 105/268 (39%), Gaps = 45/268 (16%)

Query: 44  TQKKTILSVEDIIALIGDKCDGVI----GQLTEDWGETLFAALS------RAGGKAFSNM 93
              K  L  E +   I D    +       LTED    +  A                  
Sbjct: 30  EFHKGALDDEQLKESIRD-AHFIGLRSRTHLTED----VINAAEKLVAIGAFA------- 77

Query: 94  AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGW 153
            +G N VD++AA K GI V N P   T + AEL     L   R + EA+     G     
Sbjct: 78  -IGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRG---VG 133

Query: 154 LPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF 213
                     +G+ +G+IG G IG+    +  E   M + +YD+     L          
Sbjct: 134 NKLAAGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIENKLPLG--------- 183

Query: 214 LKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR 273
              N  Q         + ++L  +DV+SLH   + +T +++  + ++ MK  ++L+N SR
Sbjct: 184 ---NATQVQ------HLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASR 234

Query: 274 GPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           G V+D  AL + L    +    +DVF  
Sbjct: 235 GTVVDIPALADALASKHLAGAAIDVFPT 262

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score =  180 bits (458), Expect = 2e-54
 Identities = 54/255 (21%), Positives = 93/255 (36%), Gaps = 27/255 (10%)

Query: 48  TILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG--KAFSNMAVGYNNVDVNAA 105
           T      + A   D+ + + G         L   L+R     K    ++ G + + + A 
Sbjct: 26  TFKDAAAVTAADYDQIEVMYG-----NHPLLKTILARPTNQLKFVQVISAGVDYLPLKAL 80

Query: 106 NKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG 165
              G+ V NT G+  +  +E   +  L+  R    A    R              + L G
Sbjct: 81  QAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGA---RQWALPMTTSTLTG 137

Query: 166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK 225
           Q + + G G+IG + A        M++I  +       + F                   
Sbjct: 138 QQLLIYGTGQIGQSLAAKA-SALGMHVIGVN-TTGHPADHFHETVA-------------- 181

Query: 226 RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH 285
             ++  + L  A+ I     L  TT+HL + E     K++ +L+N  RGP +D  AL+  
Sbjct: 182 -FTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240

Query: 286 LKQNPMFRVGLDVFE 300
           L  + +    LDV E
Sbjct: 241 LDHHQLSMAALDVTE 255

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score =  179 bits (456), Expect = 2e-53
 Identities = 55/210 (26%), Positives = 86/210 (40%), Gaps = 45/210 (21%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
           +G +++D++   + GIA  + PG       +      LA A                   
Sbjct: 67  IGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE------------------ 108

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L  +T GV+GAG++G     ++  G    ++  D  +  R            
Sbjct: 109 ---VRGADLAERTYGVVGAGQVGGRLVEVL-RGLGWKVLVCDPPRQAR------------ 152

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
                + V      S++ +L EADVISLH       +  T HL+++ RLA ++    LVN
Sbjct: 153 -EPDGEFV------SLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVN 205

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
            SRG V+D  AL   L+      V LDV+E
Sbjct: 206 ASRGAVVDNQALRRLLEGGADLEVALDVWE 235

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score =  177 bits (452), Expect = 6e-53
 Identities = 52/210 (24%), Positives = 81/210 (38%), Gaps = 45/210 (21%)

Query: 95  VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWL 154
            G ++VD     + GI     PG       E   S  L  A R                 
Sbjct: 70  AGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER----------------- 112

Query: 155 PNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL 214
                G  L+ +T+G++G G +GS     + E   +  +  D  +A R            
Sbjct: 113 ----DGFSLRDRTIGIVGVGNVGSRLQTRL-EALGIRTLLCDPPRAAR------------ 155

Query: 215 KANGEQPVTWKRASSMDEVLREADVISLH----PVLDKTTYHLINKERLATMKKEAILVN 270
             +           ++DE+++EADV++ H          T HL ++  +  +K  AIL+N
Sbjct: 156 -GDEGDFR------TLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILIN 208

Query: 271 CSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
             RGPV+D  AL+  L       V LDV+E
Sbjct: 209 ACRGPVVDNAALLARLNAGQPLSVVLDVWE 238

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score =  107 bits (269), Expect = 6e-27
 Identities = 51/230 (22%), Positives = 88/230 (38%), Gaps = 26/230 (11%)

Query: 74  WGETLFAALSRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSL 132
                   L++A     F +   G + + ++A  +    + N  G+     +E      L
Sbjct: 54  EPARAKPLLAKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLL 112

Query: 133 AAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNL 192
           +  R++    E  +  L   W         LKG+T+ ++G G IG   A    + F M +
Sbjct: 113 SLMRQLPLYREQQKQRL---WQS--HPYQGLKGRTLLILGTGSIGQHIAHTG-KHFGMKV 166

Query: 193 IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTY 251
           +            F   Y                  +++++L +AD ++S+ P   + T+
Sbjct: 167 LGVS-RSGRERAGFDQVYQ---------------LPALNKMLAQADVIVSVLP-ATRETH 209

Query: 252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
           HL    R    K  AIL N  RG  I+E  L+  L+   +    LDVFE 
Sbjct: 210 HLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQ 259

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315

 Score =  100 bits (252), Expect = 1e-24
 Identities = 42/221 (19%), Positives = 71/221 (32%), Gaps = 30/221 (13%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGV------LTETTAELAASLSLAAARRIVEA 141
           KA   +  G + +         +   + P        +     E A S  L   RR  + 
Sbjct: 61  KAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDY 120

Query: 142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT 201
                  L   W P        +  +VG++GAG +G+  A  +   +   L  +      
Sbjct: 121 QALKNQAL---WKP--LPEYTREEFSVGIMGAGVLGAKVAESLQ-AWGFPLRCWS-RSRK 173

Query: 202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD-VISLHPVLDKTTYHLINKERLA 260
                 +  G                  +   L +   +I+L P     T  +IN E L 
Sbjct: 174 SWPGVESYVG---------------REELRAFLNQTRVLINLLP-NTAQTVGIINSELLD 217

Query: 261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV 301
            +   A ++N +RG  + E  L+  L    +    LDVF  
Sbjct: 218 QLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQ 258

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293

 Score = 67.7 bits (165), Expect = 5e-13
 Identities = 22/134 (16%), Positives = 40/134 (29%), Gaps = 18/134 (13%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           + G  V V+G GR+G + AR         +                     +   G +P 
Sbjct: 153 IHGANVAVLGLGRVGMSVARKFA-ALGAKVKVGARESDLLAR---------IAEMGMEPF 202

Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL 282
              +     + LR+ DV             ++    LA M     +++ +  P   +   
Sbjct: 203 HISK---AAQELRDVDVCINT-----IPALVVTANVLAEMPSHTFVIDLASKPGGTDFRY 254

Query: 283 VEHLKQNPMFRVGL 296
            E      +   GL
Sbjct: 255 AEKRGIKALLVPGL 268

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	342
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	100.0
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	100.0
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	100.0
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	100.0
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	100.0
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	100.0
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	100.0
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	100.0
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	100.0
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	100.0
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	100.0
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	100.0
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	100.0
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	100.0
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	100.0
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	100.0
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	100.0
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	100.0
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	100.0
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	100.0
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	100.0
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	100.0
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	100.0
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	100.0
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	100.0
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	100.0
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	100.0
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	100.0
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	100.0
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	100.0
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	100.0
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	100.0
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	100.0
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	100.0
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.97
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.97
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.96
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.93
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	99.87
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	99.85
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	99.78
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	99.75
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	99.75
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	99.71
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	99.7
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	99.7
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	99.69
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	99.37
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	99.31
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	99.31
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	99.31
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	99.28
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	99.27
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	99.26
3obb_A	300	Probable 3-hydroxyisobutyrate dehydrogenase; struc	99.25
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	99.24
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	99.23
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	99.19
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	99.19
3pef_A	287	6-phosphogluconate dehydrogenase, NAD-binding; gam	99.16
3qha_A	296	Putative oxidoreductase; seattle structural genomi	99.16
3pdu_A	287	3-hydroxyisobutyrate dehydrogenase family protein;	99.12
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	99.12
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	99.1
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	99.09
4gwg_A	484	6-phosphogluconate dehydrogenase, decarboxylating;	99.09
4ezb_A	317	Uncharacterized conserved protein; structural geno	99.09
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	99.07
2hk9_A	275	Shikimate dehydrogenase; shikimate pathway, drug d	99.0
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	99.0
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	98.95
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	98.95
2g5c_A	281	Prephenate dehydrogenase; TYRA, oxidoreductase; HE	98.94
2zyd_A	480	6-phosphogluconate dehydrogenase, decarboxylating;	98.92
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	98.92
2gf2_A	296	Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct	98.9
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	98.9
1yb4_A	295	Tartronic semialdehyde reductase; structural genom	98.89
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	98.89
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	98.87
2cvz_A	289	Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase;	98.85
2p4q_A	497	6-phosphogluconate dehydrogenase, decarboxylating;	98.84
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	98.82
2iz1_A	474	6-phosphogluconate dehydrogenase, decarboxylating;	98.81
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	98.81
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	98.8
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	98.25
2pgd_A	482	6-phosphogluconate dehydrogenase; oxidoreductase (	98.77
1pgj_A	478	6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o	98.75
3fr7_A	525	Putative ketol-acid reductoisomerase (OS05G057370	98.74
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	98.7
1i36_A	264	Conserved hypothetical protein MTH1747; NADP bindi	98.7
2dpo_A	319	L-gulonate 3-dehydrogenase; structural genomics, N	98.7
4a5o_A	286	Bifunctional protein fold; oxidoreductase, hydrola	98.69
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	98.69
1zej_A	293	HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural	98.68
3b1f_A	290	Putative prephenate dehydrogenase; enzyme, 4-hydro	98.67
3d1l_A	266	Putative NADP oxidoreductase BF3122; structural ge	98.63
2i99_A	312	MU-crystallin homolog; thyroid hormine binding pro	98.63
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	98.6
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	98.6
2ahr_A	259	Putative pyrroline carboxylate reductase; pyrrolin	98.57
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	98.57
3pid_A	432	UDP-glucose 6-dehydrogenase; rossmann fold, oxidor	98.56
2f1k_A	279	Prephenate dehydrogenase; tyrosine synthesis, X-RA	98.55
3gt0_A	247	Pyrroline-5-carboxylate reductase; structural geno	98.54
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	98.5
2izz_A	322	Pyrroline-5-carboxylate reductase 1; amino-acid bi	98.46
3tri_A	280	Pyrroline-5-carboxylate reductase; amino acid bios	98.43
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	98.41
1b0a_A	288	Protein (fold bifunctional protein); folate, dehyd	98.39
3p2o_A	285	Bifunctional protein fold; structural genomics, ce	98.36
3ngx_A	276	Bifunctional protein fold; methylenetetrahydrofola	98.36
2qrj_A	394	Saccharopine dehydrogenase, NAD+, L-lysine- formin	98.35
3l07_A	285	Bifunctional protein fold; structural genomics, ID	98.35
2c2x_A	281	Methylenetetrahydrofolate dehydrogenase- methenylt	98.35
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	98.35
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	98.34
1yqg_A	263	Pyrroline-5-carboxylate reductase; structural geno	98.34
1a4i_A	301	Methylenetetrahydrofolate dehydrogenase / methenyl	98.33
4a26_A	300	Putative C-1-tetrahydrofolate synthase, cytoplasm;	98.32
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	98.31
3mog_A	483	Probable 3-hydroxybutyryl-COA dehydrogenase; struc	98.31
1jay_A	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma	98.28
3k96_A	356	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA	98.28
1bg6_A	359	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L	98.27
1edz_A	320	5,10-methylenetetrahydrofolate dehydrogenase; nucl	98.26
3u62_A	253	Shikimate dehydrogenase; shikimate pathway, oxidor	98.25
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	98.23
3don_A	277	Shikimate dehydrogenase; alpha-beta structure, ros	98.23
2rcy_A	262	Pyrroline carboxylate reductase; malaria, structur	98.21
1dlj_A	402	UDP-glucose dehydrogenase; rossmann fold, ternary	98.2
1x0v_A	354	GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase	98.2
2egg_A	297	AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff	98.18
1zcj_A	463	Peroxisomal bifunctional enzyme; peroxisomal multi	98.18
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	98.17
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	98.17
1evy_A	366	Glycerol-3-phosphate dehydrogenase; rossmann fold,	98.16
1y81_A	138	Conserved hypothetical protein; hyperthermophIle,	98.14
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	98.12
1x7d_A	350	Ornithine cyclodeaminase; binds NAD+, binds L-orni	98.11
1txg_A	335	Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid	98.1
3hdj_A	313	Probable ornithine cyclodeaminase; APC62486, borde	98.09
1yj8_A	375	Glycerol-3-phosphate dehydrogenase; SGPP, structur	98.08
4huj_A	220	Uncharacterized protein; PSI-biology, nysgrc, stru	98.07
1vl6_A	388	Malate oxidoreductase; TM0542, NAD-dependent malic	98.06
1wdk_A	715	Fatty oxidation complex alpha subunit; alpha2BETA2	98.05
2duw_A	145	Putative COA-binding protein; ligand binding prote	98.02
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	98.01
1z82_A	335	Glycerol-3-phosphate dehydrogenase; TM0378, struct	97.99
2wtb_A	725	MFP2, fatty acid multifunctional protein (ATMFP2);	97.99
3c85_A	183	Putative glutathione-regulated potassium-efflux S	97.98
2dc1_A	236	L-aspartate dehydrogenase; NAD, oxidoreductase; HE	97.98
2ew2_A	316	2-dehydropantoate 2-reductase, putative; alpha-str	97.93
1omo_A	322	Alanine dehydrogenase; two-domain, beta-sandwich-d	97.92
3phh_A	269	Shikimate dehydrogenase; shikimate pathway, helico	97.9
2i76_A	276	Hypothetical protein; NADP, dehydrogenase, TM1727,	97.9
2z2v_A	365	Hypothetical protein PH1688; L-lysine dehydrogenas	97.87
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	97.8
3dfu_A	232	Uncharacterized protein from 6-phosphogluconate de	97.79
2qyt_A	317	2-dehydropantoate 2-reductase; APC81190, porphyrom	97.79
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	97.76
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	97.74
3ulk_A	491	Ketol-acid reductoisomerase; branched-chain amino	97.73
2a9f_A	398	Putative malic enzyme ((S)-malate:NAD+ oxidoreduct	97.71
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	97.7
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	97.66
3o8q_A	281	Shikimate 5-dehydrogenase I alpha; structural geno	97.65
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	97.64
3hwr_A	318	2-dehydropantoate 2-reductase; YP_299159.1, PANE/A	97.62
3jyo_A	283	Quinate/shikimate dehydrogenase; enzyme-cofactor c	97.62
3tnl_A	315	Shikimate dehydrogenase; structural genomics, cent	97.61
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	97.6
1p77_A	272	Shikimate 5-dehydrogenase; NADPH, oxidoreductase;	97.59
1nyt_A	271	Shikimate 5-dehydrogenase; alpha/beta domains, WID	97.59
4b4u_A	303	Bifunctional protein fold; oxidoreductase; HET: NA	97.57
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	97.53
2dvm_A	439	Malic enzyme, 439AA long hypothetical malate oxido	97.51
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	97.5
3pwz_A	272	Shikimate dehydrogenase 3; alpha-beta, oxidoreduct	97.48
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	97.48
3c7a_A	404	Octopine dehydrogenase; L) stereospecific opine de	97.45
1id1_A	153	Putative potassium channel protein; RCK domain, E.	97.45
1iuk_A	140	Hypothetical protein TT1466; structural genomics,	97.4
1guz_A	310	Malate dehydrogenase; oxidoreductase, tricarboxyli	97.37
3uuw_A	308	Putative oxidoreductase with NAD(P)-binding rossm	97.36
1vlv_A	325	Otcase, ornithine carbamoyltransferase; TM1097, st	97.36
1pvv_A	315	Otcase, ornithine carbamoyltransferase; dodecamer;	97.36
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	97.35
3r7f_A	304	Aspartate carbamoyltransferase; aspartate transcar	97.34
1duv_G	333	Octase-1, ornithine transcarbamoylase; enzyme-inhi	97.32
1nvt_A	287	Shikimate 5'-dehydrogenase; structural genomics, P	97.32
3t4e_A	312	Quinate/shikimate dehydrogenase; structural genomi	97.3
2i6u_A	307	Otcase, ornithine carbamoyltransferase; X-RAY crys	97.29
1tlt_A	319	Putative oxidoreductase (virulence factor MVIM HO;	97.29
3fbt_A	282	Chorismate mutase and shikimate 5-dehydrogenase fu	97.27
2d59_A	144	Hypothetical protein PH1109; COA binding, structur	97.27
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	97.26
2ef0_A	301	Ornithine carbamoyltransferase; TTHA1199, thermus	97.26
2ewd_A	317	Lactate dehydrogenase,; protein-substrate_cofactor	97.22
1dxh_A	335	Ornithine carbamoyltransferase; transcarbamylase;	97.22
2ho3_A	325	Oxidoreductase, GFO/IDH/MOCA family; streptococcus	97.2
4fgw_A	391	Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi	97.2
3dfz_A	223	SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase	97.15
1pzg_A	331	LDH, lactate dehydrogenase; apicomplexa, APAD, tet	97.14
4ep1_A	340	Otcase, ornithine carbamoyltransferase; structural	97.13
3c1a_A	315	Putative oxidoreductase; ZP_00056571.1, oxidoreduc	97.12
1ml4_A	308	Aspartate transcarbamoylase; beta pleated sheet, p	97.12
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	97.1
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	97.1
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	97.09
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	97.08
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	97.06
3tpf_A	307	Otcase, ornithine carbamoyltransferase; structural	97.06
3gd5_A	323	Otcase, ornithine carbamoyltransferase; structural	97.04
4a8p_A	355	Putrescine carbamoyltransferase; ornithine agmatin	97.04
1pg5_A	299	Aspartate carbamoyltransferase; 2.60A {Sulfolobus	97.04
1oth_A	321	Protein (ornithine transcarbamoylase); transferase	97.03
1xea_A	323	Oxidoreductase, GFO/IDH/MOCA family; structural ge	97.01
4amu_A	365	Ornithine carbamoyltransferase, catabolic; ornithi	97.01
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	96.99
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	96.99
1hyh_A	309	L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2	96.99
4a8t_A	339	Putrescine carbamoyltransferase; trabnsferase PALO	96.97
2w37_A	359	Ornithine carbamoyltransferase, catabolic; transca	96.96
4f2g_A	309	Otcase 1, ornithine carbamoyltransferase 1; struct	96.95
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	96.94
3mz0_A	344	Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd;	96.93
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	96.92
1a5z_A	319	L-lactate dehydrogenase; oxidoreductase, glycolysi	96.91
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	96.91
4h31_A	358	Otcase, ornithine carbamoyltransferase; structural	96.9
3g17_A	294	Similar to 2-dehydropantoate 2-reductase; structur	96.86
3abi_A	365	Putative uncharacterized protein PH1688; L-lysine	96.86
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	96.86
3fef_A	450	Putative glucosidase LPLD; gulosidase, structural	96.85
3zwc_A	742	Peroxisomal bifunctional enzyme; beta oxidation pa	96.83
2hjr_A	328	Malate dehydrogenase; malaria, structural genomics	96.82
2v6b_A	304	L-LDH, L-lactate dehydrogenase; oxidoreductase, ra	96.82
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.81
1jw9_B	249	Molybdopterin biosynthesis MOEB protein; MOEB: mod	96.8
1ydw_A	362	AX110P-like protein; structural genomics, protein	96.8
3csu_A	310	Protein (aspartate carbamoyltransferase); transfer	96.8
3rui_A	340	Ubiquitin-like modifier-activating enzyme ATG7; au	96.78
3e82_A	364	Putative oxidoreductase; NAD, GFO/IDH/MOCA family,	96.77
1t2d_A	322	LDH-P, L-lactate dehydrogenase; ternary complex, o	96.74
1f06_A	320	MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH	96.74
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	96.73
2axq_A	467	Saccharopine dehydrogenase; rossmann fold variant,	96.72
3bio_A	304	Oxidoreductase, GFO/IDH/MOCA family; structural ge	96.72
1npy_A	271	Hypothetical shikimate 5-dehydrogenase-like protei	96.72
3grf_A	328	Ornithine carbamoyltransferase; ornithine transcar	96.71
3m2t_A	359	Probable dehydrogenase; PSI, SGXNY, structural gen	96.7
1obb_A	480	Maltase, alpha-glucosidase; glycosidase, sulfinic	96.67
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	96.67
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	96.67
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	96.63
1ldn_A	316	L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA	96.62
3qy9_A	243	DHPR, dihydrodipicolinate reductase; rossmann fold	96.62
3ego_A	307	Probable 2-dehydropantoate 2-reductase; structural	96.6
1j5p_A	253	Aspartate dehydrogenase; TM1643, structural genomi	96.59
2nu8_A	288	Succinyl-COA ligase [ADP-forming] subunit alpha; c	96.57
3aog_A	440	Glutamate dehydrogenase; NAD(H), oxidoreducta; HET	96.57
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	96.57
3ohs_X	334	Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d	96.54
2vt3_A	215	REX, redox-sensing transcriptional repressor REX;	96.53
1hdg_O	332	Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o	96.49
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	96.42
1lld_A	319	L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N	96.4
1oju_A	294	MDH, malate dehydrogenase; hyperthermophilic, oxid	96.39
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	96.35
3vku_A	326	L-LDH, L-lactate dehydrogenase; rossmann fold, NAD	96.34
3ldh_A	330	Lactate dehydrogenase; oxidoreductase, CHOH donor,	96.34
3gdo_A	358	Uncharacterized oxidoreductase YVAA; structural ge	96.32
3on5_A	362	BH1974 protein; structural genomics, joint center	96.31
4ekn_B	306	Aspartate carbamoyltransferase; atcase, aspartate	96.3
4had_A	350	Probable oxidoreductase protein; structural genomi	96.3
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	96.3
1zq6_A	359	Otcase, ornithine carbamoyltransferase; alpha/beta	96.29
3sds_A	353	Ornithine carbamoyltransferase, mitochondrial; str	96.28
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	96.27
1zud_1	251	Adenylyltransferase THIF; thiamin, thiazole, prote	96.26
2tmg_A	415	Protein (glutamate dehydrogenase); metabolic role,	96.25
3tl2_A	315	Malate dehydrogenase; center for structural genomi	96.25
2czc_A	334	Glyceraldehyde-3-phosphate dehydrogenase; glycolys	96.23
4a7p_A	446	UDP-glucose dehydrogenase; oxidoreductase, carbohy	96.23
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	96.22
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	96.21
3nep_X	314	Malate dehydrogenase; halophIle, molecular adpatat	96.2
3tum_A	269	Shikimate dehydrogenase family protein; rossmann-f	96.19
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	96.19
4fcc_A	450	Glutamate dehydrogenase; protein complex, rossmann	96.18
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	96.17
4gsl_A	615	Ubiquitin-like modifier-activating enzyme ATG7; ub	96.17
1ur5_A	309	Malate dehydrogenase; oxidoreductase, tricarboxyli	96.17
3cmc_O	334	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m	96.15
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	96.15
1h6d_A	433	Precursor form of glucose-fructose oxidoreductase;	96.15
3f4l_A	345	Putative oxidoreductase YHHX; structural genomics,	96.15
3vh1_A	598	Ubiquitin-like modifier-activating enzyme ATG7; au	96.14
1lu9_A	287	Methylene tetrahydromethanopterin dehydrogenase; a	96.11
4f3y_A	272	DHPR, dihydrodipicolinate reductase; structural ge	96.08
1xyg_A	359	Putative N-acetyl-gamma-glutamyl-phosphate reduct;	96.06
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	96.05
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	96.04
4ew6_A	330	D-galactose-1-dehydrogenase protein; nysgrc, PSI-b	96.03
2dt5_A	211	AT-rich DNA-binding protein; REX, NADH, NAD, rossm	96.03
3cps_A	354	Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g	96.03
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	96.02
1pjq_A	457	CYSG, siroheme synthase; rossman fold, nucleotide	96.01
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	96.01
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	96.0
4fb5_A	393	Probable oxidoreductase protein; PSI-biology, nysg	96.0
3p7m_A	321	Malate dehydrogenase; putative dehydrogenase, enzy	96.0
3k92_A	424	NAD-GDH, NAD-specific glutamate dehydrogenase; ROC	96.0
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	96.0
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	95.99
1u8x_X	472	Maltose-6'-phosphate glucosidase; structural genom	95.97
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.97
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	95.97
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	95.96
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.95
1oi7_A	288	Succinyl-COA synthetase alpha chain; SCS, ligase,	95.94
1b7g_O	340	Protein (glyceraldehyde 3-phosphate dehydrogenase;	95.94
3ijr_A	291	Oxidoreductase, short chain dehydrogenase/reducta;	95.94
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	95.94
3d6n_B	291	Aspartate carbamoyltransferase; reactor, chamber,	95.93
3d0o_A	317	L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly	95.93
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	95.93
3pqe_A	326	L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas	95.92
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	95.92
1ff9_A	450	Saccharopine reductase; lysine biosynthesis, alpha	95.92
3nv9_A	487	Malic enzyme; rossmann fold, oxidoreductase; 2.25A	95.9
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	95.89
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	95.87
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	95.86
3do5_A	327	HOM, homoserine dehydrogenase; NP_069768.1, putati	95.85
3e5r_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	95.85
4gqa_A	412	NAD binding oxidoreductase; structural genomics, P	95.83
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	95.82
3gg2_A	450	Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd	95.78
3keo_A	212	Redox-sensing transcriptional repressor REX; DNA b	95.77
2yyy_A	343	Glyceraldehyde-3-phosphate dehydrogenase; glyceral	95.77
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	95.75
3ojo_A	431	CAP5O; rossmann fold, complex with cofactor NAD an	95.73
2i6t_A	303	Ubiquitin-conjugating enzyme E2-like isoform A; L-	95.73
3ijp_A	288	DHPR, dihydrodipicolinate reductase; ssgcid, SBRI,	95.73
3h8v_A	292	Ubiquitin-like modifier-activating enzyme 5; rossm	95.7
4eye_A	342	Probable oxidoreductase; structural genomics, niai	95.69
1y6j_A	318	L-lactate dehydrogenase; southeast collaboratory f	95.68
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	95.65
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.64
1s6y_A	450	6-phospho-beta-glucosidase; hydrolase, structural	95.64
3dty_A	398	Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram	95.62
1js1_X	324	Transcarbamylase; alpha/beta topology, two domains	95.62
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	95.62
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	95.6
2fp4_A	305	Succinyl-COA ligase [GDP-forming] alpha-chain, mit	95.6
3r6d_A	221	NAD-dependent epimerase/dehydratase; structural ge	95.59
2p2s_A	336	Putative oxidoreductase; YP_050235.1, structural g	95.58
3g79_A	478	NDP-N-acetyl-D-galactosaminuronic acid dehydrogen;	95.56
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.54
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	95.5
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	95.5
2yfq_A	421	Padgh, NAD-GDH, NAD-specific glutamate dehydrogena	95.46
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	95.43
1cf2_P	337	Protein (glyceraldehyde-3-phosphate dehydrogenase)	95.43
3lk7_A	451	UDP-N-acetylmuramoylalanine--D-glutamate ligase; a	95.43
3o9z_A	312	Lipopolysaccaride biosynthesis protein WBPB; oxido	95.42
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	95.41
2zqz_A	326	L-LDH, L-lactate dehydrogenase; oxidoreductase, ro	95.4
1kyq_A	274	Met8P, siroheme biosynthesis protein Met8; homodim	95.39
3fi9_A	343	Malate dehydrogenase; structural genomics, oxidore	95.39
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.38
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	95.38
3aoe_E	419	Glutamate dehydrogenase; rossmann fold, NADH, oxid	95.36
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	95.32
3vtf_A	444	UDP-glucose 6-dehydrogenase; two discrete alpha/be	95.31
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	95.3
4e4t_A	419	Phosphoribosylaminoimidazole carboxylase, ATPase;	95.29
2d4a_B	308	Malate dehydrogenase; archaea, hyperthermophIle, o	95.29
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	95.28
1ez4_A	318	Lactate dehydrogenase; rossmann fold, oxidoreducta	95.28
3gvi_A	324	Malate dehydrogenase; NAD, oxidoreductase, tricarb	95.27
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	95.26
3gms_A	340	Putative NADPH:quinone reductase; structural genom	95.24
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	95.24
2nqt_A	352	N-acetyl-gamma-glutamyl-phosphate reductase; apopr	95.24
3oa2_A	318	WBPB; oxidoreductase, sugar biosynthesis, dehydrog	95.24
4h3v_A	390	Oxidoreductase domain protein; structural genomics	95.23
3eag_A	326	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME	95.21
4aj2_A	331	L-lactate dehydrogenase A chain; oxidoreductase-in	95.2
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	95.16
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	95.15
3v2g_A	271	3-oxoacyl-[acyl-carrier-protein] reductase; struct	95.14
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	95.14
3u3x_A	361	Oxidoreductase; structural genomics, PSI-biology,	95.14
1ys4_A	354	Aspartate-semialdehyde dehydrogenase; oxidoreducta	95.12
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	95.11
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.06
4ina_A	405	Saccharopine dehydrogenase; structural genomics, P	95.05
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	95.04
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	95.03
1vkn_A	351	N-acetyl-gamma-glutamyl-phosphate reductase; TM178	95.02
3v5n_A	417	Oxidoreductase; structural genomics, PSI-biology,	95.01
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	95.01
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	95.01
2ozp_A	345	N-acetyl-gamma-glutamyl-phosphate reductase; amino	94.98
3r3s_A	294	Oxidoreductase; structural genomics, csgid, center	94.98
1y8q_A	346	Ubiquitin-like 1 activating enzyme E1A; SUMO, hete	94.95
2y0c_A	478	BCEC, UDP-glucose dehydrogenase; oxidoreductase, c	94.95
3q98_A	399	Transcarbamylase; rossmann fold, transferase; 2.00	94.92
3upl_A	446	Oxidoreductase; rossmann fold, NADPH binding; 1.50	94.82
3hhp_A	312	Malate dehydrogenase; MDH, citric acid cycle, TCA	94.8
2ph5_A	480	Homospermidine synthase; alpha-beta protein, struc	94.79
3btv_A	438	Galactose/lactose metabolism regulatory protein GA	94.79
3ff4_A	122	Uncharacterized protein; structural genomics, PSI-	94.72
2nvw_A	479	Galactose/lactose metabolism regulatory protein GA	94.7
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	94.67
1mld_A	314	Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D	94.66
3ip3_A	337	Oxidoreductase, putative; structural genomics, PSI	94.65
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	94.6
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	94.59
2q3e_A	467	UDP-glucose 6-dehydrogenase; hexamer, structural g	94.58
3is3_A	270	17BETA-hydroxysteroid dehydrogenase; short chain d	94.52
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	94.52
2yv1_A	294	Succinyl-COA ligase [ADP-forming] subunit alpha; C	94.52
2g82_O	331	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G	94.51
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	94.5
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	94.49
3h5n_A	353	MCCB protein; ubiquitin-activating enzyme, microci	94.48
1lc0_A	294	Biliverdin reductase A; oxidoreductase, tetrapyrro	94.47
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	94.41
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	94.39
2yfk_A	418	Aspartate/ornithine carbamoyltransferase; transcar	94.38
3i6i_A	346	Putative leucoanthocyanidin reductase 1; rossmann	94.38
2xxj_A	310	L-LDH, L-lactate dehydrogenase; oxidoreductase, hy	94.37
3qvo_A	236	NMRA family protein; structural genomics, PSI-biol	94.34
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	94.33
4gmf_A	372	Yersiniabactin biosynthetic protein YBTU; rossmann	94.32
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	94.29
2pd4_A	275	Enoyl-[acyl-carrier-protein] reductase [NADH]; ant	94.28
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	94.28
2ejw_A	332	HDH, homoserine dehydrogenase; NAD-dependent, oxid	94.25
1lnq_A	336	MTHK channels, potassium channel related protein;	94.24
3k31_A	296	Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI	94.24
1mv8_A	436	GMD, GDP-mannose 6-dehydrogenase; rossman fold, do	94.22
1dih_A	273	Dihydrodipicolinate reductase; oxidoreductase; HET	94.21
3ew7_A	221	LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend	94.2
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	94.16
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	94.16
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	94.12
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	94.07
3h2s_A	224	Putative NADH-flavin reductase; Q03B84, NESG, LCR1	94.05
1v9l_A	421	Glutamate dehydrogenase; protein-NAD complex, oxid	94.01
3dqp_A	219	Oxidoreductase YLBE; alpha-beta protein., structur	93.98
2p91_A	285	Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD	93.92
3mtj_A	444	Homoserine dehydrogenase; rossmann-fold, PSI, MCSG	93.91
3r3j_A	456	Glutamate dehydrogenase; rossman fold, oxidoreduct	93.89
2yv2_A	297	Succinyl-COA synthetase alpha chain; COA-binding d	93.88
1tt5_B	434	Ubiquitin-activating enzyme E1C isoform 1; cell cy	93.85
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	93.78
3c8m_A	331	Homoserine dehydrogenase; structural genomics, APC	93.78
2ep5_A	350	350AA long hypothetical aspartate-semialdehyde deh	93.74
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	93.74
2o3j_A	481	UDP-glucose 6-dehydrogenase; structural genomics,	93.73
4g65_A	461	TRK system potassium uptake protein TRKA; structur	93.72
3oqb_A	383	Oxidoreductase; structural genomics, protein struc	93.68
3edm_A	259	Short chain dehydrogenase; structural genomics, ox	93.65
3dhn_A	227	NAD-dependent epimerase/dehydratase; reductase, PF	93.63
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	93.59
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	93.59
3kzn_A	359	Aotcase, N-acetylornithine carbamoyltransferase; t	93.57
1qyc_A	308	Phenylcoumaran benzylic ether reductase PT1; NADPH	93.55
3dr3_A	337	N-acetyl-gamma-glutamyl-phosphate reductase; csgid	93.55
1xq6_A	253	Unknown protein; structural genomics, protein stru	93.41
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	93.34
2x5o_A	439	UDP-N-acetylmuramoylalanine--D-glutamate ligase; A	93.31
1g0o_A	283	Trihydroxynaphthalene reductase; protein-NADPH-act	93.3
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	93.27
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	93.24
2bma_A	470	Glutamate dehydrogenase (NADP+); malaria, drug des	93.22
1smk_A	326	Malate dehydrogenase, glyoxysomal; tricarboxylic c	93.2
1qsg_A	265	Enoyl-[acyl-carrier-protein] reductase; enoyl redu	93.17
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	93.1
3mw9_A	501	GDH 1, glutamate dehydrogenase 1; allostery, inhib	93.1
2bka_A	242	CC3, TAT-interacting protein TIP30; NADPH, PEG600,	93.09
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	93.08
1ebf_A	358	Homoserine dehydrogenase; dinucleotide, NAD, dimer	93.07
2wyu_A	261	Enoyl-[acyl carrier protein] reductase; oxidoreduc	93.0
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	93.0
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	92.99
3gpi_A	286	NAD-dependent epimerase/dehydratase; structural ge	92.98
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	92.97
2x0j_A	294	Malate dehydrogenase; oxidoreductase, hyperthermop	92.94
1qyd_A	313	Pinoresinol-lariciresinol reductase; NADPH-depende	92.89
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	92.82
2gas_A	307	Isoflavone reductase; NADPH-dependent reductase, o	92.75
2wm3_A	299	NMRA-like family domain containing protein 1; unkn	92.71

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=100.00  E-value=6.1e-65  Score=487.18  Aligned_cols=304  Identities=25%  Similarity=0.382  Sum_probs=267.4

Q ss_pred             eCCCCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHh-hccCCc
Q 019387           10 WNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGK   88 (342)
Q Consensus        10 ~~~~~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l-~~l~~k   88 (342)
                      ..+++++|||++.+++++. ++.|++. +++++.. .+...+++++.+.+.+ +|+++++...++++++++++ |+|  |
T Consensus        23 ~~~~~~~kvlv~~~~~~~~-~~~l~~~-~~v~~~~-~~~~~~~~~l~~~~~~-~d~li~~~~~~i~~~~l~~~~~~L--k   96 (345)
T 4g2n_A           23 MSTHPIQKAFLCRRFTPAI-EAELRQR-FDLEVNL-EDTVLTPSGIASRAHG-AEVLFVTATEAITAEVIRKLQPGL--K   96 (345)
T ss_dssp             ----CCCEEEESSCCCHHH-HHHHHHH-SEEEECT-TCCCCCHHHHHHHTTT-CSEEEECTTSCBCHHHHHHTTTTC--C
T ss_pred             cccCCCCEEEEeCCCCHHH-HHHHHcc-CCEEEec-CCCCCCHHHHHHHhcC-CeEEEEeCCCCCCHHHHHhhcCCc--e
Confidence            3456789999999998754 6778765 5877543 3445789999998885 99999987778999999998 676  9


Q ss_pred             eEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeE
Q 019387           89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (342)
Q Consensus        89 ~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktv  168 (342)
                      +|++.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|..|.+....|.+|+||||
T Consensus        97 ~I~~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktv  176 (345)
T 4g2n_A           97 TIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRL  176 (345)
T ss_dssp             EEEESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEE
T ss_pred             EEEEcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999988755556899999999


Q ss_pred             EEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCc
Q 019387          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (342)
Q Consensus       169 gIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~  248 (342)
                      ||||+|+||+++|+++ ++|||+|++||+++......           .     +.....++++++++||+|++|+|+++
T Consensus       177 GIIGlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~~~-----------~-----g~~~~~~l~ell~~sDvV~l~~Plt~  239 (345)
T 4g2n_A          177 GIFGMGRIGRAIATRA-RGFGLAIHYHNRTRLSHALE-----------E-----GAIYHDTLDSLLGASDIFLIAAPGRP  239 (345)
T ss_dssp             EEESCSHHHHHHHHHH-HTTTCEEEEECSSCCCHHHH-----------T-----TCEECSSHHHHHHTCSEEEECSCCCG
T ss_pred             EEEEeChhHHHHHHHH-HHCCCEEEEECCCCcchhhh-----------c-----CCeEeCCHHHHHhhCCEEEEecCCCH
Confidence            9999999999999997 89999999999986432111           0     12234699999999999999999999


Q ss_pred             ccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCcccccccccccccc
Q 019387          249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRAT  319 (342)
Q Consensus       249 ~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~  319 (342)
                      +|+++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||         ||+++|||+|++|.+.
T Consensus       240 ~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP~~~~pL~~~~nvilTPHia~~t~e~  319 (345)
T 4g2n_A          240 ELKGFLDHDRIAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPRYRSLDNIFLTPHIGSATHET  319 (345)
T ss_dssp             GGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECCSCTTCBHHH
T ss_pred             HHHHHhCHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCceEEEecCCCCCCCCCchHHhCCCEEEcCccCcCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999         7999999999999986


Q ss_pred             ccccccCchhhcccccccc
Q 019387          320 SCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       320 ~~~~~~~~~~~~~~~~~~~  338 (342)
                      .  ..+.+..++|...+++
T Consensus       320 ~--~~~~~~~~~ni~~~l~  336 (345)
T 4g2n_A          320 R--DAMGWLLIQGIEALNQ  336 (345)
T ss_dssp             H--HHHHHHHHHHHHHHHT
T ss_pred             H--HHHHHHHHHHHHHHHc
Confidence            5  7788888888887764

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=100.00  E-value=1.5e-64  Score=483.46  Aligned_cols=292  Identities=27%  Similarity=0.383  Sum_probs=248.3

Q ss_pred             eEEEEeCCCCch-H-HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEc
Q 019387           16 YRVVSTKPMPGT-R-WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        16 ~~vl~~~~~~~~-~-~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~   93 (342)
                      |+||++.....+ . +.+.+++.  .+++........+.+++.     ++|+++++..+++++++++++|+|  |+|++.
T Consensus         1 Mkil~~~~~~~~~p~~~e~l~~~--~~~~~~~~~~~~~~~~l~-----~ad~i~v~~~~~i~~~~l~~~p~L--k~I~~~   71 (334)
T 3kb6_A            1 MNVLFTSVPQEDVPFYQEALKDL--SLKIYTTDVSKVPENELK-----KAELISVFVYDKLTEELLSKMPRL--KLIHTR   71 (334)
T ss_dssp             -CEEECSCCTTHHHHHHHHTTTS--CEEECSSCGGGSCHHHHH-----HCSEEEECTTSCBCHHHHHTCTTC--CEEEES
T ss_pred             CEEEEeCCCcccCHHHHHHHHhC--CcEEEeCCcccCCHHHhc-----CCCEEEEeCCCCCCHHHHhcCCCC--cEEEEC
Confidence            678887532222 1 22344444  344443333334555543     489999988889999999999987  999999


Q ss_pred             cccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEec
Q 019387           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        94 ~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~  173 (342)
                      |+|+||||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|..|..  ..+.+|+|+|+||||+
T Consensus        72 ~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~--~~~~~l~g~tvGIiG~  149 (334)
T 3kb6_A           72 SVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSE--ILARELNRLTLGVIGT  149 (334)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGG--GCBCCGGGSEEEEECC
T ss_pred             CcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccccccccccccccccc--cccceecCcEEEEECc
Confidence            99999999999999999999999999999999999999999999999999999999876643  4578999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019387          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (342)
Q Consensus       174 G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~l  253 (342)
                      |+||+.+|+++ ++|||+|++||++.......           .+      ....++++++++||+|++|+|+|++|+|+
T Consensus       150 G~IG~~va~~~-~~fg~~v~~~d~~~~~~~~~-----------~~------~~~~~l~ell~~sDivslh~Plt~~T~~l  211 (334)
T 3kb6_A          150 GRIGSRVAMYG-LAFGMKVLCYDVVKREDLKE-----------KG------CVYTSLDELLKESDVISLHVPYTKETHHM  211 (334)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH-----------TT------CEECCHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             chHHHHHHHhh-cccCceeeecCCccchhhhh-----------cC------ceecCHHHHHhhCCEEEEcCCCChhhccC
Confidence            99999999996 89999999999987543221           01      13469999999999999999999999999


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-------------------------CCccc
Q 019387          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-------------------------LGFSS  308 (342)
Q Consensus       254 i~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-------------------------~~~~~  308 (342)
                      ||++.|++||+|++|||+|||++|||+||++||++|+|+||+||||++||                         ||+++
T Consensus       212 i~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~~~~~~~L~~~~nvil  291 (334)
T 3kb6_A          212 INEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELACKDNVII  291 (334)
T ss_dssp             BCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHHHHHHHHHHTSTTEEE
T ss_pred             cCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccccccchhhccCCCEEE
Confidence            99999999999999999999999999999999999999999999999997                         48999


Q ss_pred             cccccccccccccccccCchhhcccccccc
Q 019387          309 FKHISTQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       309 tPhia~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      |||+|++|.++.  ..+.++.++|...+++
T Consensus       292 TPHia~~T~ea~--~~~~~~~~~ni~~~l~  319 (334)
T 3kb6_A          292 TPHIAYYTDKSL--ERIREETVKVVKAFVK  319 (334)
T ss_dssp             CCSCTTCBHHHH--HHHHHHHHHHHHHHHH
T ss_pred             CCchhhChHHHH--HHHHHHHHHHHHHHHc
Confidence            999999999865  7788888888887764

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=100.00  E-value=1.9e-62  Score=468.40  Aligned_cols=299  Identities=27%  Similarity=0.390  Sum_probs=264.1

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~   94 (342)
                      ++|||++.+++++ .++.|++.+ ++.+. ..+...+++++.+.+.+ +|+++++...++++++++++|++  |+|++.|
T Consensus         2 ~~kvlv~~~~~~~-~~~~l~~~~-~v~~~-~~~~~~~~~~~~~~~~~-~d~~i~~~~~~i~~~~l~~~~~L--k~I~~~~   75 (330)
T 4e5n_A            2 LPKLVITHRVHEE-ILQLLAPHC-ELITN-QTDSTLTREEILRRCRD-AQAMMAFMPDRVDADFLQACPEL--RVIGCAL   75 (330)
T ss_dssp             CCEEEECSCCCHH-HHHHHTTTC-EEECC-CSSSCCCHHHHHHHHTT-CSEEEECTTCCBCHHHHHHCTTC--CEEEESS
T ss_pred             CCEEEEecCCCHH-HHHHHHhCC-eEEEe-cCCCCCCHHHHHHHhCC-CeEEEEeCCCCCCHHHHhhCCCC--cEEEECC
Confidence            5789999999875 478887765 77643 23345689999998885 99999977778999999999987  9999999


Q ss_pred             ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC
Q 019387           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (342)
Q Consensus        95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G  174 (342)
                      +|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|+++.+++.+++|.|..|.+ ...|.+|+|+||||||+|
T Consensus        76 ~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~-~~~~~~l~g~tvGIIG~G  154 (330)
T 4e5n_A           76 KGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQP-RFYGTGLDNATVGFLGMG  154 (330)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCS-CCCCCCSTTCEEEEECCS
T ss_pred             CcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCc-cccCCccCCCEEEEEeeC
Confidence            9999999999999999999999999999999999999999999999999999999998876 345789999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccccc
Q 019387          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (342)
Q Consensus       175 ~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li  254 (342)
                      +||+.+|+++ ++|||+|++||+++......  ..            .++ ...++++++++||+|++|+|++++|+++|
T Consensus       155 ~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~--~~------------~g~-~~~~l~ell~~aDvV~l~~P~t~~t~~li  218 (330)
T 4e5n_A          155 AIGLAMADRL-QGWGATLQYHEAKALDTQTE--QR------------LGL-RQVACSELFASSDFILLALPLNADTLHLV  218 (330)
T ss_dssp             HHHHHHHHHT-TTSCCEEEEECSSCCCHHHH--HH------------HTE-EECCHHHHHHHCSEEEECCCCSTTTTTCB
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCCCcHhHH--Hh------------cCc-eeCCHHHHHhhCCEEEEcCCCCHHHHHHh
Confidence            9999999996 89999999999987322111  00            011 23589999999999999999999999999


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCC-------C----------CCcccccccccccc
Q 019387          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVT-------E----------LGFSSFKHISTQDR  317 (342)
Q Consensus       255 ~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~E-------P----------~~~~~tPhia~~~~  317 (342)
                      +++.|+.||+|++|||+|||+++|++||++||++|+|+||+||||++|       |          ||+++|||+|++|.
T Consensus       219 ~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~  298 (330)
T 4e5n_A          219 NAELLALVRPGALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVR  298 (330)
T ss_dssp             CHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCH
T ss_pred             CHHHHhhCCCCcEEEECCCCchhCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChH
Confidence            999999999999999999999999999999999999999999999999       7          79999999999998


Q ss_pred             ccccccccCchhhcccccccc
Q 019387          318 ATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       318 ~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      +..  ..+....++|...+++
T Consensus       299 e~~--~~~~~~~~~ni~~~~~  317 (330)
T 4e5n_A          299 AVR--LEIERCAAQNILQALA  317 (330)
T ss_dssp             HHH--HHHHHHHHHHHHHHHT
T ss_pred             HHH--HHHHHHHHHHHHHHHc
Confidence            865  7788888888887764

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=100.00  E-value=3e-62  Score=477.06  Aligned_cols=299  Identities=27%  Similarity=0.321  Sum_probs=259.9

Q ss_pred             EeCCCCceEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCC
Q 019387            9 VWNPNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGG   87 (342)
Q Consensus         9 ~~~~~~~~~vl~~~~~~~~~~~~~l~~~~~-~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~   87 (342)
                      ++.|+.++|||++.++++.. .+.|++.++ +++...   ...+++++.+.+.+ +|+++.+..+++++++++++|+|  
T Consensus         9 ~~~~~~~~kIl~~~~i~~~~-~~~l~~~g~~~v~~~~---~~~~~~~l~~~~~~-~d~l~v~~~~~i~~~~l~~~p~L--   81 (416)
T 3k5p_A            9 LSLSRDRINVLLLEGISQTA-VEYFKSSGYTNVTHLP---KALDKADLIKAISS-AHIIGIRSRTQLTEEIFAAANRL--   81 (416)
T ss_dssp             ---CGGGSCEEECSCCCHHH-HHHHHHTTCCCEEECS---SCCCHHHHHHHHTT-CSEEEECSSCCBCHHHHHHCTTC--
T ss_pred             cCCCCCCcEEEEECCCCHHH-HHHHHHCCCcEEEECC---CCCCHHHHHHHccC-CEEEEEcCCCCCCHHHHHhCCCc--
Confidence            45788999999999998754 788888887 777532   34689999999985 99998887779999999999987  


Q ss_pred             ceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCe
Q 019387           88 KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQT  167 (342)
Q Consensus        88 k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gkt  167 (342)
                      |+|++.|+|+|+||+++|+++||.|+|+|++|+++|||++++++|++.|+++.+++.+++|.|..+   ...+.+|+|||
T Consensus        82 k~I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~---~~~~~el~gkt  158 (416)
T 3k5p_A           82 IAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKT---AIGSREVRGKT  158 (416)
T ss_dssp             CEEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC---CTTCCCSTTCE
T ss_pred             EEEEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhccccccc---CCCCccCCCCE
Confidence            999999999999999999999999999999999999999999999999999999999999988653   23468999999


Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCC
Q 019387          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD  247 (342)
Q Consensus       168 vgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~  247 (342)
                      +||||+|+||+++|+++ ++|||+|++||+++...                  ........++++++++||+|++|+|++
T Consensus       159 vGIIGlG~IG~~vA~~l-~~~G~~V~~yd~~~~~~------------------~~~~~~~~sl~ell~~aDvV~lhvPlt  219 (416)
T 3k5p_A          159 LGIVGYGNIGSQVGNLA-ESLGMTVRYYDTSDKLQ------------------YGNVKPAASLDELLKTSDVVSLHVPSS  219 (416)
T ss_dssp             EEEECCSHHHHHHHHHH-HHTTCEEEEECTTCCCC------------------BTTBEECSSHHHHHHHCSEEEECCCC-
T ss_pred             EEEEeeCHHHHHHHHHH-HHCCCEEEEECCcchhc------------------ccCcEecCCHHHHHhhCCEEEEeCCCC
Confidence            99999999999999996 89999999999875321                  001224579999999999999999999


Q ss_pred             cccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--------------CCcccccccc
Q 019387          248 KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--------------LGFSSFKHIS  313 (342)
Q Consensus       248 ~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--------------~~~~~tPhia  313 (342)
                      ++|+++|+++.|++||+|++|||+|||++||++||++||++|+++||+||||+.||              ||+++|||++
T Consensus       220 ~~T~~li~~~~l~~mk~gailIN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig  299 (416)
T 3k5p_A          220 KSTSKLITEAKLRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIG  299 (416)
T ss_dssp             ----CCBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCT
T ss_pred             HHHhhhcCHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCC
Confidence            99999999999999999999999999999999999999999999999999999998              5799999999


Q ss_pred             ccccccccccccCchhhcccccccc
Q 019387          314 TQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      ++|.++.  ..+..+.++|...|++
T Consensus       300 ~~T~ea~--~~~~~~~~~nl~~~l~  322 (416)
T 3k5p_A          300 GSTEEAQ--ERIGTEVTRKLVEYSD  322 (416)
T ss_dssp             TCCHHHH--HHHHHHHHHHHHHHHH
T ss_pred             CCCHHHH--HHHHHHHHHHHHHHHh
Confidence            9999866  7778888888877763

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=100.00  E-value=1e-62  Score=470.92  Aligned_cols=305  Identities=26%  Similarity=0.340  Sum_probs=230.4

Q ss_pred             CCCceeEEEeCCCCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHH
Q 019387            1 MAKPVSIEVWNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFA   80 (342)
Q Consensus         1 ~~~~~~~~~~~~~~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~   80 (342)
                      ||+...+.  .+|++++||++.+++++ .++.|++ ++++.....   ..+++++.+.+. ++|+++++..+++++++++
T Consensus        18 ~~~~~~~~--~~~~~~~vl~~~~~~~~-~~~~L~~-~~~v~~~~~---~~~~~~~~~~~~-~~d~li~~~~~~i~~~~l~   89 (340)
T 4dgs_A           18 LYFQSMLE--FRNVKPDLLLVEPMMPF-VMDELQR-NYSVHRLYQ---AADRPALEAALP-SIRAVATGGGAGLSNEWME   89 (340)
T ss_dssp             -----------------CEECSCCCHH-HHHTHHH-HSCCEETTC---GGGHHHHHHHGG-GCCEEEEETTTCBCHHHHH
T ss_pred             hHHHhhhc--cCCCCCEEEEECCCCHH-HHHHHhc-CCcEEEeCC---CCCHHHHHHHhC-CcEEEEEcCCCCCCHHHHh
Confidence            44553333  45788899999999875 4677765 456664321   236788877775 5999999877789999999


Q ss_pred             HhhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc
Q 019387           81 ALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (342)
Q Consensus        81 ~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~  160 (342)
                      ++|+|  |+|++.|+|+|+||+++|+++||.|+|+|++++++||||+++++|++.|+++.+++.+++|.|..+.. ...|
T Consensus        90 ~~p~L--k~I~~~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~-~~~~  166 (340)
T 4dgs_A           90 KLPSL--GIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQ-LPLG  166 (340)
T ss_dssp             HCSSC--CEEEEESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC-------CCC
T ss_pred             hCCCC--EEEEECCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccC-cCcc
Confidence            99987  99999999999999999999999999999999999999999999999999999999999999875411 1246


Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+|+||||||||+|+||+++|+++ ++|||+|++||+++...                   ..+....++++++++||+|
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~-------------------~~~~~~~sl~ell~~aDvV  226 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRA-EAFGMSVRYWNRSTLSG-------------------VDWIAHQSPVDLARDSDVL  226 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSCCTT-------------------SCCEECSSHHHHHHTCSEE
T ss_pred             ccccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCcccc-------------------cCceecCCHHHHHhcCCEE
Confidence            899999999999999999999997 79999999999987531                   1122347999999999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCcccccc
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKH  311 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPh  311 (342)
                      ++|+|++++|+++|+++.|+.||+|++|||++||++||++||++||++|+|+||+||||++||         ||+++|||
T Consensus       227 il~vP~t~~t~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~~~L~~~~nvilTPH  306 (340)
T 4dgs_A          227 AVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVLMPH  306 (340)
T ss_dssp             EECC----------CHHHHHHTTTTCEEEECSCC--------------CCSSEEEESCCSSSSSCCSHHHHSSSEEECSS
T ss_pred             EEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCceEEEeCCcCCCCCCccchhhCCCEEEcCc
Confidence            999999999999999999999999999999999999999999999999999999999999999         89999999


Q ss_pred             ccccccccccccccCchhhcccccccc
Q 019387          312 ISTQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       312 ia~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      +|++|.+..  ..+....++|...+++
T Consensus       307 ia~~t~e~~--~~~~~~~~~nl~~~~~  331 (340)
T 4dgs_A          307 QGSATVETR--MAMGKLVLANLAAHFA  331 (340)
T ss_dssp             CSSCCHHHH--HHHHHHHHHHHHHHHT
T ss_pred             CCcCCHHHH--HHHHHHHHHHHHHHHc
Confidence            999999865  7788888888887764

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=100.00  E-value=3.7e-61  Score=470.43  Aligned_cols=296  Identities=23%  Similarity=0.272  Sum_probs=255.2

Q ss_pred             CCCceEEEEeCCCCchHHHHHHHhCCC-eEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceE
Q 019387           12 PNGKYRVVSTKPMPGTRWINLLIEQDC-RVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAF   90 (342)
Q Consensus        12 ~~~~~~vl~~~~~~~~~~~~~l~~~~~-~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i   90 (342)
                      |+.+||||++.++++. .++.|++.++ ++++..   ...+++++.+.+.+ +|+++++..+++++++++++|+|  |+|
T Consensus         1 ~~~~~kil~~~~~~~~-~~~~l~~~~~~~v~~~~---~~~~~~~l~~~~~~-~d~l~~~~~~~~~~~~l~~~~~L--k~I   73 (404)
T 1sc6_A            1 EKDKIKFLLVEGVHQK-ALESLRAAGYTNIEFHK---GALDDEQLKESIRD-AHFIGLRSRTHLTEDVINAAEKL--VAI   73 (404)
T ss_dssp             CCSSCCEEECSCCCHH-HHHHHHHTTCCCEEECS---SCCCHHHHHHHTTS-CSEEEECSSCCBCHHHHHHCSSC--CEE
T ss_pred             CCCceEEEEeCCCCHH-HHHHHHhCCCcEEEEcC---CCCCHHHHHHHhcC-CeEEEEcCCCCCCHHHHhhCCCC--cEE
Confidence            4677899999888764 4788888777 777532   24688999888875 99998887778999999999987  999


Q ss_pred             EEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEE
Q 019387           91 SNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV  170 (342)
Q Consensus        91 ~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgI  170 (342)
                      ++.|+|+|+||+++|+++||.|+|+|++|+++||||+++++|++.|+++.+++.+++|.|..+   .+.+.+|+|||+||
T Consensus        74 ~~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~---~~~~~el~gktlGi  150 (404)
T 1sc6_A           74 GAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKL---AAGSFEARGKKLGI  150 (404)
T ss_dssp             EECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEE
T ss_pred             EECCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCcccc---CCCccccCCCEEEE
Confidence            999999999999999999999999999999999999999999999999999999999998643   23578999999999


Q ss_pred             EecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019387          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 vG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t  250 (342)
                      ||+|+||+.+|+++ ++|||+|++||+++...              .+    ......++++++++||+|++|+|++++|
T Consensus       151 IGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~--------------~~----~~~~~~~l~ell~~aDvV~l~~P~t~~t  211 (404)
T 1sc6_A          151 IGYGHIGTQLGILA-ESLGMYVYFYDIENKLP--------------LG----NATQVQHLSDLLNMSDVVSLHVPENPST  211 (404)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCCC--------------CT----TCEECSCHHHHHHHCSEEEECCCSSTTT
T ss_pred             EeECHHHHHHHHHH-HHCCCEEEEEcCCchhc--------------cC----CceecCCHHHHHhcCCEEEEccCCChHH
Confidence            99999999999996 89999999999976421              00    1223468999999999999999999999


Q ss_pred             ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--------------CCccccccccccc
Q 019387          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--------------LGFSSFKHISTQD  316 (342)
Q Consensus       251 ~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--------------~~~~~tPhia~~~  316 (342)
                      +++|+++.|++||+|++|||+|||+++|++||+++|++|+++||+||||+.||              ||+++|||++++|
T Consensus       212 ~~li~~~~l~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T  291 (404)
T 1sc6_A          212 KNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGST  291 (404)
T ss_dssp             TTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCS
T ss_pred             HHHhhHHHHhhcCCCeEEEECCCChHHhHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999998              4899999999999


Q ss_pred             cccccccccCchhhcccccccc
Q 019387          317 RATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      .+..  ..+..+.++|...+++
T Consensus       292 ~ea~--~~~~~~~~~nl~~~l~  311 (404)
T 1sc6_A          292 QEAQ--ENIGLEVAGKLIKYSD  311 (404)
T ss_dssp             HHHH--HHHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHHHHHc
Confidence            9865  6677888888877764

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=100.00  E-value=8.7e-61  Score=454.78  Aligned_cols=289  Identities=20%  Similarity=0.198  Sum_probs=249.7

Q ss_pred             CCceEEEEeCCCCchHHHHHH-HhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEE
Q 019387           13 NGKYRVVSTKPMPGTRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (342)
Q Consensus        13 ~~~~~vl~~~~~~~~~~~~~l-~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~   91 (342)
                      +++||||++.+.++ .|.+.| ++..+++++...    .+.+++.+.+.+ +|+++++.  ++++++++++|+|  |+|+
T Consensus         3 ~~~mkili~~~~~~-~~~~~L~~~~~p~~~~~~~----~~~~~~~~~~~~-ad~li~~~--~~~~~~l~~~~~L--k~I~   72 (324)
T 3hg7_A            3 LSQRTLLLLSQDNA-HYERLLKAAHLPHLRILRA----DNQSDAEKLIGE-AHILMAEP--ARAKPLLAKANKL--SWFQ   72 (324)
T ss_dssp             -CCEEEEEESTTHH-HHHHHHHHSCCTTEEEEEC----SSHHHHHHHGGG-CSEEEECH--HHHGGGGGGCTTC--CEEE
T ss_pred             ccccEEEEecCCCH-HHHHHHhhccCCCeEEEeC----CChhHHHHHhCC-CEEEEECC--CCCHHHHhhCCCc--eEEE
Confidence            35699999988876 578889 777778876543    256788887875 99999863  4567788889987  9999


Q ss_pred             EccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEE
Q 019387           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (342)
Q Consensus        92 ~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIv  171 (342)
                      +.|+|+|+||++++++ ||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|...     .+.+|+|+|||||
T Consensus        73 ~~~~G~d~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~tvGII  146 (324)
T 3hg7_A           73 STYAGVDVLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSH-----PYQGLKGRTLLIL  146 (324)
T ss_dssp             ESSSCCGGGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTCEEEEE
T ss_pred             ECCCCCCccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCC-----CCcccccceEEEE
Confidence            9999999999998764 999999999999999999999999999999999999999988642     4579999999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019387          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~  251 (342)
                      |+|+||+++|+++ ++|||+|++||+++.... .               ........++++++++||+|++|+|+|++|+
T Consensus       147 GlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~-~---------------~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~  209 (324)
T 3hg7_A          147 GTGSIGQHIAHTG-KHFGMKVLGVSRSGRERA-G---------------FDQVYQLPALNKMLAQADVIVSVLPATRETH  209 (324)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSSCCCCT-T---------------CSEEECGGGHHHHHHTCSEEEECCCCCSSST
T ss_pred             EECHHHHHHHHHH-HhCCCEEEEEcCChHHhh-h---------------hhcccccCCHHHHHhhCCEEEEeCCCCHHHH
Confidence            9999999999997 899999999999864210 0               0011234689999999999999999999999


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCcccccccccccccccc
Q 019387          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSC  321 (342)
Q Consensus       252 ~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~  321 (342)
                      ++|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||          ||+++|||+|++|.+   
T Consensus       210 ~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~---  286 (324)
T 3hg7_A          210 HLFTASRFEHCKPGAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP---  286 (324)
T ss_dssp             TSBCTTTTTCSCTTCEEEECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH---
T ss_pred             HHhHHHHHhcCCCCcEEEECCCchhhCHHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH---
Confidence            9999999999999999999999999999999999999999999999999999          799999999999975   


Q ss_pred             ccccCchhhcccccccc
Q 019387          322 PKLTREWPIYDNSCCIR  338 (342)
Q Consensus       322 ~~~~~~~~~~~~~~~~~  338 (342)
                       ..+.+..++|...+++
T Consensus       287 -~~~~~~~~~nl~~~~~  302 (324)
T 3hg7_A          287 -DDVAQIFVRNYIRFID  302 (324)
T ss_dssp             -HHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHHc
Confidence             2466777788777654

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=100.00  E-value=8.6e-61  Score=458.08  Aligned_cols=296  Identities=25%  Similarity=0.367  Sum_probs=250.5

Q ss_pred             ceEEEEeCCCCc-hHHHHH-HHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHH-HHHHhhccCCceEE
Q 019387           15 KYRVVSTKPMPG-TRWINL-LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET-LFAALSRAGGKAFS   91 (342)
Q Consensus        15 ~~~vl~~~~~~~-~~~~~~-l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e-~l~~l~~l~~k~i~   91 (342)
                      ||||++....+. ..+++. +++.++++.....   ..+ +++.+.+.+ +|+++++...+++++ +++++|+.++|+|+
T Consensus         1 Mmki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~-~~~~~~~~~-~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~   75 (343)
T 2yq5_A            1 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQ---ALT-SATVDLAEG-CSSVSLKPLGPVDEEVVYQKLSEYGVKCIG   75 (343)
T ss_dssp             -CEEEEESCCGGGHHHHHHHHHHHTCEEEEESS---CCS-TTGGGGGTT-CSEEEECCSSCBCCHHHHHHHHHTTCCEEE
T ss_pred             CceEEEEecCcccHHHHHHHHHhCCeEEEECCC---CCC-HHHHHHhcC-CcEEEEcCCCCcCHHHHHHhccccCceEEE
Confidence            367877653222 223444 3456778876532   223 566666764 999999877799999 99999875669999


Q ss_pred             EccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHH-cCCCCCCCCCcccccccCCCeEEE
Q 019387           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR-AGLYDGWLPNLFVGNLLKGQTVGV  170 (342)
Q Consensus        92 ~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~-~g~w~~w~~~~~~~~~L~gktvgI  170 (342)
                      +.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.++ +|.|. |.. ...+++|+|+||||
T Consensus        76 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~-w~~-~~~~~~l~gktvgI  153 (343)
T 2yq5_A           76 LRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFT-WPS-NLISNEIYNLTVGL  153 (343)
T ss_dssp             ESSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCC-CCG-GGCBCCGGGSEEEE
T ss_pred             ECceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcc-ccc-CCCccccCCCeEEE
Confidence            9999999999999999999999999999999999999999999999999999999 99885 643 24678999999999


Q ss_pred             EecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019387          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 vG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t  250 (342)
                      ||+|+||+++|+++ ++|||+|++||+++....+             .    .. ...++++++++||+|++|+|+|++|
T Consensus       154 iGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~-------------~----~~-~~~~l~ell~~aDvV~l~~Plt~~t  214 (343)
T 2yq5_A          154 IGVGHIGSAVAEIF-SAMGAKVIAYDVAYNPEFE-------------P----FL-TYTDFDTVLKEADIVSLHTPLFPST  214 (343)
T ss_dssp             ECCSHHHHHHHHHH-HHTTCEEEEECSSCCGGGT-------------T----TC-EECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EecCHHHHHHHHHH-hhCCCEEEEECCChhhhhh-------------c----cc-cccCHHHHHhcCCEEEEcCCCCHHH
Confidence            99999999999997 8999999999998753110             0    01 2359999999999999999999999


Q ss_pred             ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-----------------------CCcc
Q 019387          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-----------------------LGFS  307 (342)
Q Consensus       251 ~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-----------------------~~~~  307 (342)
                      +++|+++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||                       ||++
T Consensus       215 ~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvi  294 (343)
T 2yq5_A          215 ENMIGEKQLKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVV  294 (343)
T ss_dssp             TTCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEE
T ss_pred             HHHhhHHHHhhCCCCcEEEECCCChhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEE
Confidence            99999999999999999999999999999999999999999999999999998                       4789


Q ss_pred             ccccccccccccccccccCchhhcccccccc
Q 019387          308 SFKHISTQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       308 ~tPhia~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      +|||+|++|.+..  ..+.+..++|...+++
T Consensus       295 lTPHia~~t~ea~--~~~~~~~~~ni~~~l~  323 (343)
T 2yq5_A          295 ITPHSAFYTETSI--RNMVQICLTDQLTIAK  323 (343)
T ss_dssp             ECSSCTTCBHHHH--HHHHHHHHHHHHHHHT
T ss_pred             ECCccccchHHHH--HHHHHHHHHHHHHHHc
Confidence            9999999999866  7788888888887764

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=100.00  E-value=5e-60  Score=454.78  Aligned_cols=297  Identities=25%  Similarity=0.352  Sum_probs=255.1

Q ss_pred             eEEEEeCCCCchH----HHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEe-cCCCCccHHHHHHhhccCCceE
Q 019387           16 YRVVSTKPMPGTR----WINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIG-QLTEDWGETLFAALSRAGGKAF   90 (342)
Q Consensus        16 ~~vl~~~~~~~~~----~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~-~~~~~~~~e~l~~l~~l~~k~i   90 (342)
                      |||++.+.+....    ..+.|  .+++++++.  +...+++++.+.+.+ +|++++ +...++++++++++|+|  |+|
T Consensus         3 mki~~~d~~~~~~~~~~~~~~l--~~~~v~~~~--~~~~~~~~l~~~~~~-ad~li~~~~~~~~~~~~l~~~~~L--k~I   75 (352)
T 3gg9_A            3 LKIAVLDDYQDAVRKLDCFSLL--QDHEVKVFN--NTVKGVGQLAARVAD-VEALVLIRERTRVTRQLLDRLPKL--KII   75 (352)
T ss_dssp             CEEEECCCTTCCGGGSGGGGGG--TTSEEEECC--SCCCSHHHHHHHTTT-CSEEEECTTSSCBCHHHHTTCTTC--CEE
T ss_pred             eEEEEEcCccccchhhhhhhhh--cCceEEEec--CCCCCHHHHHHHhcC-CeEEEEeCCCCCCCHHHHhhCCCC--eEE
Confidence            7899887776531    12334  347887653  233478899988885 999998 55678999999999987  999


Q ss_pred             EEccccC----CccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCC-------CCCCccc
Q 019387           91 SNMAVGY----NNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG-------WLPNLFV  159 (342)
Q Consensus        91 ~~~~~G~----d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~-------w~~~~~~  159 (342)
                      ++.|+|+    |+||+++|+++||.|+|+||+ +.+||||+++++|++.|+++.+++.+++|.|..       |.+....
T Consensus        76 ~~~g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~  154 (352)
T 3gg9_A           76 SQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGI  154 (352)
T ss_dssp             EESSCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTS
T ss_pred             EEeCcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCccccccccccccccc
Confidence            9999999    999999999999999999999 999999999999999999999999999999964       4333345


Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      +.+|+|+||||||+|.||+++|+++ ++|||+|++||+++......          .     .++....++++++++||+
T Consensus       155 ~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~----------~-----~g~~~~~~l~ell~~aDi  218 (352)
T 3gg9_A          155 GRVLKGQTLGIFGYGKIGQLVAGYG-RAFGMNVLVWGRENSKERAR----------A-----DGFAVAESKDALFEQSDV  218 (352)
T ss_dssp             BCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSHHHHHHHH----------H-----TTCEECSSHHHHHHHCSE
T ss_pred             CccCCCCEEEEEeECHHHHHHHHHH-HhCCCEEEEECCCCCHHHHH----------h-----cCceEeCCHHHHHhhCCE
Confidence            7899999999999999999999997 89999999999986321110          0     112234699999999999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCcccc
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSF  309 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~t  309 (342)
                      |++|+|++++|+++|+++.|+.||+|++|||+|||+++|++||++||++|+|+||+||||++||          ||+++|
T Consensus       219 V~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilT  298 (352)
T 3gg9_A          219 LSVHLRLNDETRSIITVADLTRMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICT  298 (352)
T ss_dssp             EEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEEC
T ss_pred             EEEeccCcHHHHHhhCHHHHhhCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEEC
Confidence            9999999999999999999999999999999999999999999999999999999999999999          799999


Q ss_pred             ccccccccccccccccCchhhcccccccc
Q 019387          310 KHISTQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       310 Phia~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      ||+|+.|.+..  ..+.+..++|...+++
T Consensus       299 PHia~~t~e~~--~~~~~~~~~ni~~~~~  325 (352)
T 3gg9_A          299 PHIGYVERESY--EMYFGIAFQNILDILQ  325 (352)
T ss_dssp             CSCTTCBHHHH--HHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHH--HHHHHHHHHHHHHHHc
Confidence            99999999865  6777888888877654

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=100.00  E-value=1.4e-60  Score=453.92  Aligned_cols=289  Identities=19%  Similarity=0.189  Sum_probs=248.0

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHH-HHhhccCCceEEEc
Q 019387           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLF-AALSRAGGKAFSNM   93 (342)
Q Consensus        15 ~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l-~~l~~l~~k~i~~~   93 (342)
                      |||||++.+++++ +++.|++.++++++....+  .+.++    +. ++|+++++.. ++ ++++ +++|+|  |+|++.
T Consensus         1 m~kil~~~~~~~~-~~~~L~~~~~~~~~~~~~~--~~~~~----~~-~ad~l~~~~~-~~-~~~l~~~~~~L--k~I~~~   68 (324)
T 3evt_A            1 MSLVLMAQATKPE-QLQQLQTTYPDWTFKDAAA--VTAAD----YD-QIEVMYGNHP-LL-KTILARPTNQL--KFVQVI   68 (324)
T ss_dssp             -CEEEECSCCCHH-HHHHHHHHCTTCEEEETTS--CCTTT----GG-GEEEEESCCT-HH-HHHHHSTTCCC--CEEECS
T ss_pred             CcEEEEecCCCHH-HHHHHHhhCCCeEEecCCc--cChHH----hC-CcEEEEECCc-Ch-HHHHHhhCCCc--eEEEEC
Confidence            4789999999874 6889988877665543222  23333    23 4899988754 46 8888 678887  999999


Q ss_pred             cccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHH-HHHHHcCCCCCCCCCcccccccCCCeEEEEe
Q 019387           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA-DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (342)
Q Consensus        94 ~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~-~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG  172 (342)
                      |+|+|+||+++++++||.|+|+||+++.+||||+++++|++.|++..+ .+.+++|.|....    .+.+|+||||||||
T Consensus        69 ~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~----~~~~l~gktvGIiG  144 (324)
T 3evt_A           69 SAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM----TTSTLTGQQLLIYG  144 (324)
T ss_dssp             SSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS----CCCCSTTCEEEEEC
T ss_pred             CccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC----CCccccCCeEEEEC
Confidence            999999999999999999999999999999999999999999999999 9999999876532    47899999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019387          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       173 ~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~  252 (342)
                      +|+||+++|+++ ++|||+|++||+++... +.              .. ......++++++++||+|++|+|+|++|++
T Consensus       145 lG~IG~~vA~~l-~~~G~~V~~~dr~~~~~-~~--------------~~-~~~~~~~l~ell~~aDvV~l~lPlt~~t~~  207 (324)
T 3evt_A          145 TGQIGQSLAAKA-SALGMHVIGVNTTGHPA-DH--------------FH-ETVAFTATADALATANFIVNALPLTPTTHH  207 (324)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEEESSCCCC-TT--------------CS-EEEEGGGCHHHHHHCSEEEECCCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HhCCCEEEEECCCcchh-Hh--------------Hh-hccccCCHHHHHhhCCEEEEcCCCchHHHH
Confidence            999999999997 89999999999986431 00              00 111346899999999999999999999999


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccccccccccccc
Q 019387          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSCP  322 (342)
Q Consensus       253 li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~~  322 (342)
                      +|+++.|+.||+|++|||+|||+++|++||++||++|+|+||+||||++||          ||+++|||+|++|.+..  
T Consensus       208 li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~--  285 (324)
T 3evt_A          208 LFSTELFQQTKQQPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFR--  285 (324)
T ss_dssp             CBSHHHHHTCCSCCEEEECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHH--
T ss_pred             hcCHHHHhcCCCCCEEEEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHH--
Confidence            999999999999999999999999999999999999999999999999999          79999999999998855  


Q ss_pred             cccCchhhcccccccc
Q 019387          323 KLTREWPIYDNSCCIR  338 (342)
Q Consensus       323 ~~~~~~~~~~~~~~~~  338 (342)
                      ..+.+..++|...+++
T Consensus       286 ~~~~~~~~~nl~~~l~  301 (324)
T 3evt_A          286 ATVFPIFAANFAQFVK  301 (324)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            7778888888887763

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=100.00  E-value=4.2e-60  Score=454.85  Aligned_cols=298  Identities=20%  Similarity=0.199  Sum_probs=252.8

Q ss_pred             EEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCC--CCccHHHHHHhhccCCceEEEcc
Q 019387           17 RVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLT--EDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        17 ~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~--~~~~~e~l~~l~~l~~k~i~~~~   94 (342)
                      ++|...+... ...+.|++.++++.+.....  .+.+++.+.+.+ +|++++...  .++++++++++|+|  |+|++.|
T Consensus        21 ~~lg~~~~~l-~~~~~L~~~g~ev~~~~~~~--~~~~~~~~~~~~-ad~li~~~~~~~~~~~~~l~~~p~L--k~i~~~g   94 (351)
T 3jtm_A           21 NFLGCVENAL-GIRDWLESQGHQYIVTDDKE--GPDCELEKHIPD-LHVLISTPFHPAYVTAERIKKAKNL--KLLLTAG   94 (351)
T ss_dssp             TCCSSTTTGG-GCHHHHHHTTCEEEEESCCS--STTSHHHHHTTT-CSEEEECTTSCCCBCHHHHHHCSSC--CEEEESS
T ss_pred             CEEEeccchH-HHHHHHHHCCCEEEEeCCCC--CCHHHHHHHhCC-CEEEEEccCCCCCCCHHHHhhCCCC--eEEEEeC
Confidence            4444443333 23577888899998764432  356788888875 999998653  46899999999987  9999999


Q ss_pred             ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC
Q 019387           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (342)
Q Consensus        95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G  174 (342)
                      +|+||||+++|+++||.|+|+|++|+.+||||+++++|++.|++..+++.+++|.|... .....+.+|+|+||||||+|
T Consensus        95 ~G~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~-~~~~~~~~l~gktvGIIG~G  173 (351)
T 3jtm_A           95 IGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVA-GIAYRAYDLEGKTIGTVGAG  173 (351)
T ss_dssp             SCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHH-HHHTTCCCSTTCEEEEECCS
T ss_pred             eeecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccc-cccCCcccccCCEEeEEEeC
Confidence            99999999999999999999999999999999999999999999999999999988631 11123678999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccccc
Q 019387          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (342)
Q Consensus       175 ~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li  254 (342)
                      +||+++|+++ ++|||+|++||+++......  ..            .++....++++++++||+|++|+|++++|+++|
T Consensus       174 ~IG~~vA~~l-~~~G~~V~~~dr~~~~~~~~--~~------------~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li  238 (351)
T 3jtm_A          174 RIGKLLLQRL-KPFGCNLLYHDRLQMAPELE--KE------------TGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMF  238 (351)
T ss_dssp             HHHHHHHHHH-GGGCCEEEEECSSCCCHHHH--HH------------HCCEECSCHHHHGGGCSEEEECSCCCTTTTTCB
T ss_pred             HHHHHHHHHH-HHCCCEEEEeCCCccCHHHH--Hh------------CCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhh
Confidence            9999999997 89999999999886332111  00            112234689999999999999999999999999


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccccccccccccccc
Q 019387          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSCPKL  324 (342)
Q Consensus       255 ~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~~~~  324 (342)
                      +++.|++||+|++|||+|||++||++||++||++|+|+||+||||++||          ||+++|||+|++|.+..  ..
T Consensus       239 ~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~--~~  316 (351)
T 3jtm_A          239 NKELIGKLKKGVLIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQ--LR  316 (351)
T ss_dssp             SHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHH--HH
T ss_pred             cHHHHhcCCCCCEEEECcCchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHH--HH
Confidence            9999999999999999999999999999999999999999999999999          79999999999998865  66


Q ss_pred             cCchhhcccccccc
Q 019387          325 TREWPIYDNSCCIR  338 (342)
Q Consensus       325 ~~~~~~~~~~~~~~  338 (342)
                      +.+..++|..+|++
T Consensus       317 ~~~~~~~nl~~~~~  330 (351)
T 3jtm_A          317 YAAGTKDMLERYFK  330 (351)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc
Confidence            77777788777764

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.9e-58  Score=441.25  Aligned_cols=297  Identities=27%  Similarity=0.394  Sum_probs=257.3

Q ss_pred             CCCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEE
Q 019387           12 PNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (342)
Q Consensus        12 ~~~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~   91 (342)
                      ++.+++|+++.++++. ..+.|++.++++....    ..+++++.+.+.+ +|+++++...++++++++++|+|  |+|+
T Consensus        23 ~~~~~~vli~~~~~~~-~~~~l~~~~~~v~~~~----~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~I~   94 (335)
T 2g76_A           23 MANLRKVLISDSLDPC-CRKILQDGGLQVVEKQ----NLSKEELIAELQD-CEGLIVRSATKVTADVINAAEKL--QVVG   94 (335)
T ss_dssp             ---CCEEEECSCCCHH-HHHHHHHHTCEEEECC----SCCHHHHHHHGGG-CSEEEECSSSCBCHHHHHHCSSC--CEEE
T ss_pred             hccceEEEEcCCCCHH-HHHHHHhCCCEEEECC----CCCHHHHHHHhcC-ceEEEEcCCCCCCHHHHhhCCCC--cEEE
Confidence            3556789999888764 4677777667775432    2478898888875 99999987778999999999987  9999


Q ss_pred             EccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEE
Q 019387           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (342)
Q Consensus        92 ~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIv  171 (342)
                      +.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|+++.+++.+++|.|..   ....+.+++|+|||||
T Consensus        95 ~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~---~~~~~~~l~g~tvgII  171 (335)
T 2g76_A           95 RAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWER---KKFMGTELNGKTLGIL  171 (335)
T ss_dssp             ESSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCT---GGGCBCCCTTCEEEEE
T ss_pred             ECCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCc---cCCCCcCCCcCEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999998753   2235689999999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019387          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~  251 (342)
                      |+|+||+.+|+++ ++|||+|++||+++......   .       .+     +. ..++++++++||+|++|+|++++|+
T Consensus       172 GlG~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~-------~g-----~~-~~~l~ell~~aDvV~l~~P~t~~t~  234 (335)
T 2g76_A          172 GLGRIGREVATRM-QSFGMKTIGYDPIISPEVSA---S-------FG-----VQ-QLPLEEIWPLCDFITVHTPLLPSTT  234 (335)
T ss_dssp             CCSHHHHHHHHHH-HTTTCEEEEECSSSCHHHHH---H-------TT-----CE-ECCHHHHGGGCSEEEECCCCCTTTT
T ss_pred             eECHHHHHHHHHH-HHCCCEEEEECCCcchhhhh---h-------cC-----ce-eCCHHHHHhcCCEEEEecCCCHHHH
Confidence            9999999999997 79999999999987542110   1       01     11 2589999999999999999999999


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCccccccccccccccccc
Q 019387          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRATSCP  322 (342)
Q Consensus       252 ~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~~~~  322 (342)
                      ++|+++.|+.||+|++|||+|||+++|+++|+++|++|+++||+||||+.||         ||+++|||++++|.+..  
T Consensus       235 ~li~~~~l~~mk~gailIN~arg~vvd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~L~~~~nvilTPH~~~~t~e~~--  312 (335)
T 2g76_A          235 GLLNDNTFAQCKKGVRVVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEPPRDRALVDHENVISCPHLGASTKEAQ--  312 (335)
T ss_dssp             TSBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCSCCHHHHSTTEEECSSCTTCBHHHH--
T ss_pred             HhhCHHHHhhCCCCcEEEECCCccccCHHHHHHHHHhCCccEEEEeecCCCCCCCchHHhCCCEEECCcCCCCCHHHH--
Confidence            9999999999999999999999999999999999999999999999999999         79999999999999865  


Q ss_pred             cccCchhhcccccccc
Q 019387          323 KLTREWPIYDNSCCIR  338 (342)
Q Consensus       323 ~~~~~~~~~~~~~~~~  338 (342)
                      ..+.+..++|...+++
T Consensus       313 ~~~~~~~~~nl~~~~~  328 (335)
T 2g76_A          313 SRCGEEIAVQFVDMVK  328 (335)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            7778888888877654

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=100.00  E-value=4.4e-58  Score=438.80  Aligned_cols=295  Identities=20%  Similarity=0.265  Sum_probs=251.3

Q ss_pred             eEEEEeC--CCCchHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEE
Q 019387           16 YRVVSTK--PMPGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        16 ~~vl~~~--~~~~~~~~~~l~~-~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~   92 (342)
                      |||++..  +++ ..+++.+.+ .+.++....   ...+++++.+.+.+ +|+++++...++++++++++|+.++|+|++
T Consensus         1 mki~~~~~~~~~-~~~~~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   75 (331)
T 1xdw_A            1 MKVLCYGVRDVE-LPIFEACNKEFGYDIKCVP---DYLNTKETAEMAAG-FDAVILRGNCFANKQNLDIYKKLGVKYILT   75 (331)
T ss_dssp             CEEEECSCCTTT-HHHHHHHGGGTCCEEEECS---CCSCSHHHHHTTTT-CSEEEECTTCCBCHHHHHHHHHHTCCEEEE
T ss_pred             CEEEEEecCccC-HHHHHHHHHhcCeEEEECC---CCCCHHHHHHHhcC-CeEEEEeCCCCCCHHHHhhCcccCceEEEE
Confidence            4677753  333 345677754 455665432   12355777777764 999999877789999999999844599999


Q ss_pred             ccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEe
Q 019387           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (342)
Q Consensus        93 ~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG  172 (342)
                      .|+|+|+||+++++++||.|+|+|++++.+||||+++++|++.|+++.+++.+++|.|. |.. ...+.++.|++|||||
T Consensus        76 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~-~~~~~~l~g~~vgIiG  153 (331)
T 1xdw_A           76 RTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFK-VDA-FMFSKEVRNCTVGVVG  153 (331)
T ss_dssp             SSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCC-CCS-TTCCCCGGGSEEEEEC
T ss_pred             ccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCc-ccc-CcCccCCCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999985 521 2356899999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019387          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       173 ~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~  252 (342)
                      +|+||+.+|+++ ++|||+|++||+++....            . .    .. ...++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~------------~-~----~~-~~~~l~ell~~aDvV~~~~p~t~~t~~  214 (331)
T 1xdw_A          154 LGRIGRVAAQIF-HGMGATVIGEDVFEIKGI------------E-D----YC-TQVSLDEVLEKSDIITIHAPYIKENGA  214 (331)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCCSC------------T-T----TC-EECCHHHHHHHCSEEEECCCCCTTTCC
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCccHHH------------H-h----cc-ccCCHHHHHhhCCEEEEecCCchHHHH
Confidence            999999999997 799999999999875310            0 0    01 235899999999999999999999999


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC------------------------CCccc
Q 019387          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE------------------------LGFSS  308 (342)
Q Consensus       253 li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP------------------------~~~~~  308 (342)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||                        ||+++
T Consensus       215 li~~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvil  294 (331)
T 1xdw_A          215 VVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLI  294 (331)
T ss_dssp             SBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEE
T ss_pred             HhCHHHHhhCCCCcEEEECCCcccccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEE
Confidence            999999999999999999999999999999999999999999999999998                        68999


Q ss_pred             cccccccccccccccccCchhhcccccccc
Q 019387          309 FKHISTQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       309 tPhia~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      |||+|++|.+..  ..+.++.++|...+++
T Consensus       295 TPHia~~t~~~~--~~~~~~~~~nl~~~~~  322 (331)
T 1xdw_A          295 TPHLGSYTDEAV--KNMVEVSYQNLKDLAE  322 (331)
T ss_dssp             CCSCTTCSHHHH--HHHHHHHHHHHHHHHH
T ss_pred             cCccccChHHHH--HHHHHHHHHHHHHHHc
Confidence            999999999865  7788888888877654

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=100.00  E-value=4.5e-58  Score=439.07  Aligned_cols=295  Identities=27%  Similarity=0.393  Sum_probs=249.3

Q ss_pred             eEEEEeCCCC-chHHHHHHHhC--CCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEE
Q 019387           16 YRVVSTKPMP-GTRWINLLIEQ--DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        16 ~~vl~~~~~~-~~~~~~~l~~~--~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~   92 (342)
                      |||++....+ ...+++.+++.  +.++.....   . ..+++.+.+. ++|+++++...++++++++++|+.++|+|++
T Consensus         2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~---~-~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   76 (333)
T 1j4a_A            2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDK---L-LTPETVALAK-GADGVVVYQQLDYIAETLQALADNGITKMSL   76 (333)
T ss_dssp             CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSS---C-CCTTTGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             cEEEEEecCccCHHHHHHHHhhCCCcEEEECCC---C-CcHHHHHHhc-CCcEEEEcCCCCCCHHHHHhccccCCeEEEE
Confidence            5777754322 23456777654  446654322   1 2245666666 4999999876789999999999834599999


Q ss_pred             ccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEe
Q 019387           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (342)
Q Consensus        93 ~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG  172 (342)
                      .|+|+|+||+++|+++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|. |..  ..+.+++|++|||||
T Consensus        77 ~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~--~~~~~l~g~~vgIiG  153 (333)
T 1j4a_A           77 RNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVG  153 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEEC
T ss_pred             CCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCc-cCC--cccccCCCCEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999985 542  356899999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019387          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       173 ~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~  252 (342)
                      +|+||+.+|+++ ++|||+|++||+++....+.            .     .....++++++++||+|++|+|++++|++
T Consensus       154 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~------------~-----~~~~~~l~ell~~aDvV~l~~p~~~~t~~  215 (333)
T 1j4a_A          154 TGHIGQVFMQIM-EGFGAKVITYDIFRNPELEK------------K-----GYYVDSLDDLYKQADVISLHVPDVPANVH  215 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH------------T-----TCBCSCHHHHHHHCSEEEECSCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhHHh------------h-----CeecCCHHHHHhhCCEEEEcCCCcHHHHH
Confidence            999999999997 79999999999987643110            0     11224899999999999999999999999


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-----------------------CCcccc
Q 019387          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-----------------------LGFSSF  309 (342)
Q Consensus       253 li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-----------------------~~~~~t  309 (342)
                      +|+++.|+.||+|++|||+|||+++|+++|++||++|+|+||+||||++||                       ||+++|
T Consensus       216 li~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilT  295 (333)
T 1j4a_A          216 MINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVT  295 (333)
T ss_dssp             CBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEEC
T ss_pred             HHhHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEEC
Confidence            999999999999999999999999999999999999999999999999998                       589999


Q ss_pred             ccccccccccccccccCchhhcccccccc
Q 019387          310 KHISTQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       310 Phia~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      ||+|++|.+..  ..+.+..++|...+++
T Consensus       296 PHia~~t~~~~--~~~~~~~~~nl~~~~~  322 (333)
T 1j4a_A          296 PKTAFYTTHAV--RNMVVKAFDNNLELVE  322 (333)
T ss_dssp             SSCTTCBHHHH--HHHHHHHHHHHHHHHT
T ss_pred             CccccCHHHHH--HHHHHHHHHHHHHHHc
Confidence            99999999865  6777888888777654

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=100.00  E-value=6.4e-58  Score=433.38  Aligned_cols=295  Identities=31%  Similarity=0.464  Sum_probs=255.4

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEc
Q 019387           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        14 ~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~   93 (342)
                      ++|+|+++.+++++ ..+.|++.++++...    ...+.+++.+.+.+ +|+++++...++++++++++|+|  |+|++.
T Consensus         2 ~~~~il~~~~~~~~-~~~~l~~~~~~~~~~----~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~   73 (307)
T 1wwk_A            2 KRMKVLVAAPLHEK-AIQVLKDAGLEVIYE----EYPDEDRLVELVKD-VEAIIVRSKPKVTRRVIESAPKL--KVIARA   73 (307)
T ss_dssp             --CEEEECSCCCHH-HHHHHHHTTCEEEEC----SSCCHHHHHHHSTT-CSEEEESSCSCBCHHHHTTCTTC--CEEEES
T ss_pred             CceEEEEeCCCCHH-HHHHHHhCCeEEEeC----CCCCHHHHHHHhcC-CEEEEEcCCCCCCHHHHhhCCCC--eEEEEC
Confidence            35789998887754 477887777676531    13577888888875 99999887667999999999987  999999


Q ss_pred             cccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEec
Q 019387           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        94 ~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~  173 (342)
                      |+|+|+||+++++++||.|+|+|++++.+||||+++++|++.|+++.+++.+++|.|..   ....+.+|.|++|||||+
T Consensus        74 ~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~---~~~~~~~l~g~~vgIiG~  150 (307)
T 1wwk_A           74 GVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAK---KEAMGIELEGKTIGIIGF  150 (307)
T ss_dssp             SSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCT---TTCCBCCCTTCEEEEECC
T ss_pred             CccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCc---cCcCCcccCCceEEEEcc
Confidence            99999999999999999999999999999999999999999999999999999998753   123468999999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019387          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (342)
Q Consensus       174 G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~l  253 (342)
                      |+||+++|+++ ++||++|++||++++....   ..       .+     + ...++++++++||+|++|+|++++|+++
T Consensus       151 G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~---~~-------~g-----~-~~~~l~ell~~aDvV~l~~p~~~~t~~l  213 (307)
T 1wwk_A          151 GRIGYQVAKIA-NALGMNILLYDPYPNEERA---KE-------VN-----G-KFVDLETLLKESDVVTIHVPLVESTYHL  213 (307)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECSSCCHHHH---HH-------TT-----C-EECCHHHHHHHCSEEEECCCCSTTTTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCCCChhhH---hh-------cC-----c-cccCHHHHHhhCCEEEEecCCChHHhhh
Confidence            99999999997 7999999999998764211   11       11     1 1248999999999999999999999999


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCcccccccccccccccccc
Q 019387          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSCPK  323 (342)
Q Consensus       254 i~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~~~  323 (342)
                      |+++.|+.||+|++|||++||+++|+++|+++|++|+|.||+||||+.||          ||+++|||++++|.+..  .
T Consensus       214 i~~~~l~~mk~ga~lin~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~--~  291 (307)
T 1wwk_A          214 INEERLKLMKKTAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQ--E  291 (307)
T ss_dssp             BCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHH--H
T ss_pred             cCHHHHhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHH--H
Confidence            99999999999999999999999999999999999999999999999999          79999999999999865  7


Q ss_pred             ccCchhhcccccccc
Q 019387          324 LTREWPIYDNSCCIR  338 (342)
Q Consensus       324 ~~~~~~~~~~~~~~~  338 (342)
                      .+.+..++|...+++
T Consensus       292 ~~~~~~~~nl~~~~~  306 (307)
T 1wwk_A          292 RAGVEVAEKVVKILK  306 (307)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHc
Confidence            778888888777653

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=100.00  E-value=1.4e-57  Score=431.71  Aligned_cols=292  Identities=35%  Similarity=0.550  Sum_probs=258.3

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 019387           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        16 ~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~   95 (342)
                      ++||++.+++++. ++.|++.++++++....  ..+.+++.+.+.+ +|+++++...++++++++++|+|  |+|++.|+
T Consensus         1 ~~vl~~~~~~~~~-~~~l~~~g~~v~~~~~~--~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~i~~~~~   74 (311)
T 2cuk_A            1 MRVLVTRTLPGKA-LDRLRERGLEVEVHRGL--FLPKAELLKRVEG-AVGLIPTVEDRIDAEVMDRAKGL--KVIACYSV   74 (311)
T ss_dssp             CEEEESSCCSSST-THHHHHTTCEEEECCSS--CCCHHHHHHHHTT-CSEEECCTTSCBCHHHHHHSTTC--CEEECSSS
T ss_pred             CEEEEeCCCCHHH-HHHHHhcCCeEEEecCC--CCCHHHHHHHhcC-CeEEEEcCCCCCCHHHHhhCCCC--eEEEECCc
Confidence            4688888877653 67888876788754322  4578899888875 99999887668999999999987  99999999


Q ss_pred             cCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH
Q 019387           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (342)
Q Consensus        96 G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~  175 (342)
                      |+|+||+++++++||.|+|+|++++.+||||+++++|++.|+++.+++.+++|.|..|.+....+.++.|++|||||+|+
T Consensus        75 G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~  154 (311)
T 2cuk_A           75 GVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGR  154 (311)
T ss_dssp             CCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSH
T ss_pred             CccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECH
Confidence            99999999999999999999999999999999999999999999999999999997665433457899999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccC
Q 019387          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (342)
Q Consensus       176 IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~  255 (342)
                      ||+.+|+++ ++||++|++||++++..                 .   . ...++++++++||+|++|+|++++|+++|+
T Consensus       155 IG~~~A~~l-~~~G~~V~~~d~~~~~~-----------------~---~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~  212 (311)
T 2cuk_A          155 IGQAVAKRA-LAFGMRVVYHARTPKPL-----------------P---Y-PFLSLEELLKEADVVSLHTPLTPETHRLLN  212 (311)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCCSS-----------------S---S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCCccc-----------------c---c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcC
Confidence            999999997 79999999999987531                 0   1 246899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCcccccccccccccccccccc
Q 019387          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSCPKLT  325 (342)
Q Consensus       256 ~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~~~~~  325 (342)
                      ++.|+.||+|+++||+|||+++|+++|+++|+ |++.||+||||+.||          ||+++|||++++|.+..  ..+
T Consensus       213 ~~~l~~mk~ga~lin~srg~~vd~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~--~~~  289 (311)
T 2cuk_A          213 RERLFAMKRGAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTR--ERM  289 (311)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHH--HHH
T ss_pred             HHHHhhCCCCcEEEECCCCCccCHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHH--HHH
Confidence            99999999999999999999999999999999 999999999999999          79999999999998865  777


Q ss_pred             Cchhhcccccccc
Q 019387          326 REWPIYDNSCCIR  338 (342)
Q Consensus       326 ~~~~~~~~~~~~~  338 (342)
                      .++.++|...+++
T Consensus       290 ~~~~~~nl~~~~~  302 (311)
T 2cuk_A          290 AEVAVENLLAVLE  302 (311)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc
Confidence            8888888877654

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=100.00  E-value=1.1e-58  Score=446.49  Aligned_cols=297  Identities=22%  Similarity=0.304  Sum_probs=241.5

Q ss_pred             CCCceEEEEeCCCCc-------hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhc
Q 019387           12 PNGKYRVVSTKPMPG-------TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSR   84 (342)
Q Consensus        12 ~~~~~~vl~~~~~~~-------~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~   84 (342)
                      +|+.+++++..+.+.       +...+.|++. +++....    ..+++++.+.+..+++++++.  .++++++++++|+
T Consensus        24 ~~~~r~ivll~~~~~~~~~~~~~~~~~~L~~~-~~v~~~~----~~~~~e~~~~~~~~~~~i~~~--~~i~~~~l~~~p~   96 (365)
T 4hy3_A           24 TNTERPLAISAPEPRSLDLIFSDEARAALHSK-YEIVEAD----PENIAGLGDDILGRARYIIGQ--PPLSAETLARMPA   96 (365)
T ss_dssp             ----CCEEEEECTTSCHHHHCCHHHHHHHHHH-SEEEECC----GGGGGGSCTTHHHHEEEEEEC--CCCCHHHHTTCTT
T ss_pred             ccCCCCEEEEcCCcccccccCCHHHHHHHhCC-cEEEECC----CCChHHHHHHhhCCeEEEEeC--CCCCHHHHhhCCC
Confidence            344556666554432       2246777765 5775321    224455443332247888754  5899999999998


Q ss_pred             cCCceEEEc-cccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCC-cccccc
Q 019387           85 AGGKAFSNM-AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN-LFVGNL  162 (342)
Q Consensus        85 l~~k~i~~~-~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~-~~~~~~  162 (342)
                      |  |+|++. |+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|. |... ...+.+
T Consensus        97 L--k~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~-w~~~~~~~~~~  173 (365)
T 4hy3_A           97 L--RSILNVESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTEL-WGGEGNASARL  173 (365)
T ss_dssp             C--CEEECCSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCC-CSSSSTTSCCC
T ss_pred             C--eEEEEecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCcc-ccccccccccc
Confidence            7  999975 8999999999999999999999999999999999999999999999999999999964 5432 245789


Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      |+||||||||+|+||+.+|+++ ++|||+|++||++.......          ..+     + ...++++++++||+|++
T Consensus       174 l~gktvGIIGlG~IG~~vA~~l-~~fG~~V~~~d~~~~~~~~~----------~~g-----~-~~~~l~ell~~aDvV~l  236 (365)
T 4hy3_A          174 IAGSEIGIVGFGDLGKALRRVL-SGFRARIRVFDPWLPRSMLE----------ENG-----V-EPASLEDVLTKSDFIFV  236 (365)
T ss_dssp             SSSSEEEEECCSHHHHHHHHHH-TTSCCEEEEECSSSCHHHHH----------HTT-----C-EECCHHHHHHSCSEEEE
T ss_pred             cCCCEEEEecCCcccHHHHHhh-hhCCCEEEEECCCCCHHHHh----------hcC-----e-eeCCHHHHHhcCCEEEE
Confidence            9999999999999999999996 89999999999986432111          011     1 23689999999999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccc
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHI  312 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhi  312 (342)
                      |+|++++|+++|+++.|++||+|++|||+|||++||++||++||++|+|+ |+||||++||          ||+++|||+
T Consensus       237 ~~Plt~~T~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHi  315 (365)
T 4hy3_A          237 VAAVTSENKRFLGAEAFSSMRRGAAFILLSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHR  315 (365)
T ss_dssp             CSCSSCC---CCCHHHHHTSCTTCEEEECSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSC
T ss_pred             cCcCCHHHHhhcCHHHHhcCCCCcEEEECcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCcc
Confidence            99999999999999999999999999999999999999999999999999 9999999999          799999999


Q ss_pred             cccccccccccccCchhhcccccccc
Q 019387          313 STQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       313 a~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      |++|.++.  ..+..+.++|...+++
T Consensus       316 a~~t~e~~--~~~~~~~~~ni~~~~~  339 (365)
T 4hy3_A          316 AGALDSAF--KKMGDMVLEDMDLMDR  339 (365)
T ss_dssp             SSCCHHHH--HHHHHHHHHHHHHHHT
T ss_pred             ccCHHHHH--HHHHHHHHHHHHHHHc
Confidence            99999866  8888899999887764

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=5.2e-57  Score=429.49  Aligned_cols=298  Identities=26%  Similarity=0.417  Sum_probs=256.6

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhc-cCCceEEEcc
Q 019387           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSR-AGGKAFSNMA   94 (342)
Q Consensus        16 ~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~-l~~k~i~~~~   94 (342)
                      ++|+++.+++++ .++.|++ .+++++... +...+++++.+.+.+ +|+++++..+++++++++++|+ +  |+|++.|
T Consensus         2 ~~vl~~~~~~~~-~~~~l~~-~~~~~~~~~-~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~~L--k~I~~~~   75 (320)
T 1gdh_A            2 KKILITWPLPEA-AMARARE-SYDVIAHGD-DPKITIDEMIETAKS-VDALLITLNEKCRKEVIDRIPENI--KCISTYS   75 (320)
T ss_dssp             CEEEESSCCCHH-HHHHHHT-TSEEEECCS-TTCCCHHHHHHHHTT-CSEEEEETTSCBCHHHHHHSCTTC--CEEEEES
T ss_pred             cEEEEcCCCCHH-HHHHHHh-cCCEEEecC-CCCCCHHHHHHHhcC-CEEEEECCCCCCCHHHHHhCCccc--eEEEECC
Confidence            578888877664 4677765 457765432 223578899888875 9999988766899999999998 6  9999999


Q ss_pred             ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC
Q 019387           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (342)
Q Consensus        95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G  174 (342)
                      +|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|+++.+++.+++|.|..|.+....+.++.|++|||||+|
T Consensus        76 ~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G  155 (320)
T 1gdh_A           76 IGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFG  155 (320)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCS
T ss_pred             cccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcC
Confidence            99999999999999999999999999999999999999999999999999999999766544445789999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcC-CchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccc
Q 019387          175 RIGSAYARMMVEGFKMNLIYYDL-YQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHL  253 (342)
Q Consensus       175 ~IG~~vA~~l~~afg~~V~~~d~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~l  253 (342)
                      +||+++|+++ ++||++|++||+ +++.....   .+       +     .....++++++++||+|++|+|++++|+++
T Consensus       156 ~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~~~---~~-------g-----~~~~~~l~ell~~aDvVil~~p~~~~t~~~  219 (320)
T 1gdh_A          156 SIGQALAKRA-QGFDMDIDYFDTHRASSSDEA---SY-------Q-----ATFHDSLDSLLSVSQFFSLNAPSTPETRYF  219 (320)
T ss_dssp             HHHHHHHHHH-HTTTCEEEEECSSCCCHHHHH---HH-------T-----CEECSSHHHHHHHCSEEEECCCCCTTTTTC
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCCcChhhhh---hc-------C-----cEEcCCHHHHHhhCCEEEEeccCchHHHhh
Confidence            9999999997 799999999999 77542111   01       1     112348999999999999999999999999


Q ss_pred             cCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCccccccccccccccccccc
Q 019387          254 INKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRATSCPKL  324 (342)
Q Consensus       254 i~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~~~~~~  324 (342)
                      |+++.|+.||+|++|||++||+++|+++|.++|++|++.||+||||+.||         ||+++|||++++|.+..  ..
T Consensus       220 i~~~~l~~mk~gailIn~arg~~vd~~aL~~aL~~g~i~gA~lDv~~~eP~~~~~L~~~~nviltPH~~~~t~~~~--~~  297 (320)
T 1gdh_A          220 FNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSAATQAR--ED  297 (320)
T ss_dssp             BSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTCBHHHH--HH
T ss_pred             cCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCCCCChhhhCCCEEECCcCCcCcHHHH--HH
Confidence            99999999999999999999999999999999999999999999999998         79999999999998864  66


Q ss_pred             cCchhhcccccccc
Q 019387          325 TREWPIYDNSCCIR  338 (342)
Q Consensus       325 ~~~~~~~~~~~~~~  338 (342)
                      +.+.. +|...+++
T Consensus       298 ~~~~~-~nl~~~~~  310 (320)
T 1gdh_A          298 MAHQA-NDLIDALF  310 (320)
T ss_dssp             HHHHH-HHHHHHHH
T ss_pred             HHHHH-HHHHHHHc
Confidence            66677 77776653

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=5e-58  Score=438.64  Aligned_cols=294  Identities=24%  Similarity=0.363  Sum_probs=248.1

Q ss_pred             eEEEEeC--CCCchHHHHHHHh-CCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEE
Q 019387           16 YRVVSTK--PMPGTRWINLLIE-QDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        16 ~~vl~~~--~~~~~~~~~~l~~-~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~   92 (342)
                      |||++..  +++ ..+++.+.+ .+.++.+....    ..+++.+.+. ++|+++++...++++++++++|+.++|+|++
T Consensus         1 Mkil~~~~~~~~-~~~~~~l~~~~~~~v~~~~~~----~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~~~~~Lk~I~~   74 (333)
T 1dxy_A            1 MKIIAYGARVDE-IQYFKQWAKDTGNTLEYHTEF----LDENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTI   74 (333)
T ss_dssp             CEEEECSCCTTT-HHHHHHHHHHHCCEEEECSSC----CCTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEE
T ss_pred             CEEEEEeccccC-HHHHHHHHHhCCeEEEEcCCC----ChHHHHHHhc-CCeEEEEcCCCCCCHHHHHhCcccCceEEEE
Confidence            4677743  333 345666643 45666543221    2245666666 4999999876789999999999834599999


Q ss_pred             ccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEe
Q 019387           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (342)
Q Consensus        93 ~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG  172 (342)
                      .|+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|+++.+++.+++|.|. |.. ...+.+|.|+||||||
T Consensus        75 ~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~-~~~-~~~~~~l~g~~vgIiG  152 (333)
T 1dxy_A           75 RNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYE-KAG-TFIGKELGQQTVGVMG  152 (333)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHH-HHT-CCCCCCGGGSEEEEEC
T ss_pred             cCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcc-ccc-CCCccCCCCCEEEEEC
Confidence            99999999999999999999999999999999999999999999999999999999984 411 1356899999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019387          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       173 ~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~  252 (342)
                      +|+||+.+|+++ ++|||+|++||+++....            . .    .. ...++++++++||+|++|+|++++|++
T Consensus       153 ~G~IG~~~A~~l-~~~G~~V~~~d~~~~~~~------------~-~----~~-~~~~l~ell~~aDvV~~~~P~~~~t~~  213 (333)
T 1dxy_A          153 TGHIGQVAIKLF-KGFGAKVIAYDPYPMKGD------------H-P----DF-DYVSLEDLFKQSDVIDLHVPGIEQNTH  213 (333)
T ss_dssp             CSHHHHHHHHHH-HHTTCEEEEECSSCCSSC------------C-T----TC-EECCHHHHHHHCSEEEECCCCCGGGTT
T ss_pred             cCHHHHHHHHHH-HHCCCEEEEECCCcchhh------------H-h----cc-ccCCHHHHHhcCCEEEEcCCCchhHHH
Confidence            999999999997 799999999999875310            0 0    01 235899999999999999999999999


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-----------------------CCcccc
Q 019387          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-----------------------LGFSSF  309 (342)
Q Consensus       253 li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-----------------------~~~~~t  309 (342)
                      +|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||                       ||+++|
T Consensus       214 li~~~~l~~mk~ga~lIn~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~T  293 (333)
T 1dxy_A          214 IINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLS  293 (333)
T ss_dssp             SBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEEC
T ss_pred             HhCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEEC
Confidence            999999999999999999999999999999999999999999999999997                       589999


Q ss_pred             ccccccccccccccccCchhhcccccccc
Q 019387          310 KHISTQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       310 Phia~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      ||+|++|.+..  ..+.+..++|...+++
T Consensus       294 PHia~~t~e~~--~~~~~~~~~nl~~~~~  320 (333)
T 1dxy_A          294 PHIAYYTETAV--HNMVYFSLQHLVDFLT  320 (333)
T ss_dssp             SSCTTCSHHHH--HHHHHHHHHHHHHHHH
T ss_pred             CccccChHHHH--HHHHHHHHHHHHHHHc
Confidence            99999999865  6777888888877654

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=100.00  E-value=8.9e-57  Score=426.64  Aligned_cols=292  Identities=25%  Similarity=0.409  Sum_probs=255.6

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~   94 (342)
                      +|||+++.++++ ...+.|++.++++..    ....+++++.+.+.+ +|+++++...++++++++++|+|  |+|++.|
T Consensus         5 ~mkil~~~~~~~-~~~~~l~~~~~~v~~----~~~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   76 (313)
T 2ekl_A            5 TVKALITDPIDE-ILIKTLREKGIQVDY----MPEISKEELLNIIGN-YDIIVVRSRTKVTKDVIEKGKKL--KIIARAG   76 (313)
T ss_dssp             CCEEEECSCCCH-HHHHHHHHTTCEEEE----CTTCCHHHHHHHGGG-CSEEEECSSSCBCHHHHHHCTTC--CEEEECS
T ss_pred             ceEEEEECCCCH-HHHHHHHhCCcEEEe----CCCCCHHHHHHHhcC-CeEEEEcCCCCCCHHHHhhCCCC--eEEEEcC
Confidence            468999888776 457888887777742    123578888888875 99999876667999999999987  9999999


Q ss_pred             ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC
Q 019387           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG  174 (342)
Q Consensus        95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G  174 (342)
                      +|+|+||+++++++||.|+|+|++++.+||||+++++|++.|+++.+++.+++|.|..     ..+.++.|++|||||+|
T Consensus        77 ~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~-----~~~~~l~g~~vgIIG~G  151 (313)
T 2ekl_A           77 IGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKK-----IEGLELAGKTIGIVGFG  151 (313)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCC-----CCCCCCTTCEEEEESCS
T ss_pred             CCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCC-----CCCCCCCCCEEEEEeeC
Confidence            9999999999999999999999999999999999999999999999999999998752     34679999999999999


Q ss_pred             HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccccc
Q 019387          175 RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLI  254 (342)
Q Consensus       175 ~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li  254 (342)
                      +||+++|+++ ++||++|++||++++....   ..       .+     .. ..++++++++||+|++|+|++++|+++|
T Consensus       152 ~IG~~~A~~l-~~~G~~V~~~d~~~~~~~~---~~-------~g-----~~-~~~l~ell~~aDvVvl~~P~~~~t~~li  214 (313)
T 2ekl_A          152 RIGTKVGIIA-NAMGMKVLAYDILDIREKA---EK-------IN-----AK-AVSLEELLKNSDVISLHVTVSKDAKPII  214 (313)
T ss_dssp             HHHHHHHHHH-HHTTCEEEEECSSCCHHHH---HH-------TT-----CE-ECCHHHHHHHCSEEEECCCCCTTSCCSB
T ss_pred             HHHHHHHHHH-HHCCCEEEEECCCcchhHH---Hh-------cC-----ce-ecCHHHHHhhCCEEEEeccCChHHHHhh
Confidence            9999999997 7999999999998764311   11       11     11 2489999999999999999999999999


Q ss_pred             CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC------------CCccccccccccccccccc
Q 019387          255 NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE------------LGFSSFKHISTQDRATSCP  322 (342)
Q Consensus       255 ~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP------------~~~~~tPhia~~~~~~~~~  322 (342)
                      +++.|+.||+|++|||++||+++|+++|.++|++|+++||+||||+.||            ||+++|||++++|.+..  
T Consensus       215 ~~~~l~~mk~ga~lIn~arg~~vd~~aL~~aL~~g~i~ga~lDv~~~eP~~~~~~~~L~~~~nviltPH~~~~t~~~~--  292 (313)
T 2ekl_A          215 DYPQFELMKDNVIIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQ--  292 (313)
T ss_dssp             CHHHHHHSCTTEEEEESSCGGGBCHHHHHHHHHTTCEEEEEESCCSSSSCCSHHHHHHHHSTTEEECCSCTTCSHHHH--
T ss_pred             CHHHHhcCCCCCEEEECCCCcccCHHHHHHHHHcCCCcEEEEecCCCCCCCCcccchHhhCCCEEECCccCcCcHHHH--
Confidence            9999999999999999999999999999999999999999999999999            78999999999998865  


Q ss_pred             cccCchhhcccccccc
Q 019387          323 KLTREWPIYDNSCCIR  338 (342)
Q Consensus       323 ~~~~~~~~~~~~~~~~  338 (342)
                      ..+.+..++|...+++
T Consensus       293 ~~~~~~~~~n~~~~~~  308 (313)
T 2ekl_A          293 KRVAEMTTQNLLNAMK  308 (313)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            7778888888777653

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=100.00  E-value=4.3e-57  Score=439.14  Aligned_cols=286  Identities=21%  Similarity=0.199  Sum_probs=242.7

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecC--CCCccHHHHHHhhccCCceEEEccccCCccChhHHHh
Q 019387           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK  107 (342)
Q Consensus        30 ~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~--~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~  107 (342)
                      .+.|++.++++.+....  ..+.+++.+.+.+ +|++++..  ..++++++++++|+|  |+|++.|+|+|+||+++|++
T Consensus        60 ~~~l~~~g~~v~~~~~~--~~~~~~l~~~l~~-ad~li~~~~~~~~i~~~~l~~~p~L--k~I~~~g~G~d~iD~~aa~~  134 (393)
T 2nac_A           60 RKYLESNGHTLVVTSDK--DGPDSVFERELVD-ADVVISQPFWPAYLTPERIAKAKNL--KLALTAGIGSDHVDLQSAID  134 (393)
T ss_dssp             HHHHHHTTCEEEEESCC--SSTTSHHHHHHTT-CSEEEEBTTBCCCBCHHHHHHCTTC--CEEEESSSCCTTBCHHHHHH
T ss_pred             HHHHHhCCCEEEEecCC--CCCHHHHHHhccC-CCEEEEcCccCCCCCHHHHhhCCCC--cEEEEcCccccccCHHHHhc
Confidence            35777888888754322  2345678888875 99999863  347899999999987  99999999999999999999


Q ss_pred             CCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhc
Q 019387          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (342)
Q Consensus       108 ~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~a  187 (342)
                      +||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|... .....+.+|+|+||||||+|+||+.+|+++ ++
T Consensus       135 ~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~-~~~~~~~~l~gktvGIIGlG~IG~~vA~~l-~a  212 (393)
T 2nac_A          135 RNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIA-DCVSHAYDLEAMHVGTVAAGRIGLAVLRRL-AP  212 (393)
T ss_dssp             TTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHH-HHHTTCCCCTTCEEEEECCSHHHHHHHHHH-GG
T ss_pred             CCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCcc-ccccCCccCCCCEEEEEeECHHHHHHHHHH-Hh
Confidence            9999999999999999999999999999999999999999988531 111235789999999999999999999997 89


Q ss_pred             CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcE
Q 019387          188 FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAI  267 (342)
Q Consensus       188 fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~  267 (342)
                      |||+|++||+++......  ..            .+.....++++++++||+|++|+|++++|+++|+++.|++||+|++
T Consensus       213 ~G~~V~~~d~~~~~~~~~--~~------------~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gai  278 (393)
T 2nac_A          213 FDVHLHYTDRHRLPESVE--KE------------LNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAY  278 (393)
T ss_dssp             GTCEEEEECSSCCCHHHH--HH------------HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEE
T ss_pred             CCCEEEEEcCCccchhhH--hh------------cCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCE
Confidence            999999999986432111  00            0112235899999999999999999999999999999999999999


Q ss_pred             EEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccccccccccccccccCchhhccccccc
Q 019387          268 LVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRATSCPKLTREWPIYDNSCCI  337 (342)
Q Consensus       268 lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~~~~~~~~~~~~~~~~~~~~  337 (342)
                      |||++||+++|+++|+++|++|+|.||+||||++||          ||+++|||++++|.+..  ..+....++|..+++
T Consensus       279 lIN~aRG~~vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~--~~~~~~~~~nl~~~~  356 (393)
T 2nac_A          279 IVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQ--ARYAAGTREILECFF  356 (393)
T ss_dssp             EEECSCGGGBCHHHHHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHH--HHHHHHHHHHHHHHH
T ss_pred             EEECCCchHhhHHHHHHHHHcCCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHH--HHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999          69999999999998855  566677777777665


Q ss_pred             c
Q 019387          338 R  338 (342)
Q Consensus       338 ~  338 (342)
                      +
T Consensus       357 ~  357 (393)
T 2nac_A          357 E  357 (393)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=100.00  E-value=1.1e-57  Score=440.88  Aligned_cols=301  Identities=22%  Similarity=0.209  Sum_probs=251.0

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecC--CCCccHHHHHHhhccCCceEE
Q 019387           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFS   91 (342)
Q Consensus        14 ~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~--~~~~~~e~l~~l~~l~~k~i~   91 (342)
                      .+++||..+...+. +.+.|++.++++.+....  ..+.+++.+.+.+ +|++++..  ..++++++++++|++  |+|+
T Consensus        16 ~~~~vl~~d~~~~~-~~~~l~~~~~~v~~~~~~--~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~~~l~~~~~L--k~I~   89 (364)
T 2j6i_A           16 DEEKLYGCTENKLG-IANWLKDQGHELITTSDK--EGGNSVLDQHIPD-ADIIITTPFHPAYITKERIDKAKKL--KLVV   89 (364)
T ss_dssp             HCTTCTTBTTTGGG-CHHHHHHTTCEEEEESCC--SSTTSHHHHHGGG-CSEEEECTTSCCCBCHHHHHHCTTC--CEEE
T ss_pred             cCceEEEecCccHH-HHHHHHhCCCEEEEcCCC--CCCHHHHHHHhhC-CeEEEecCcCCCCCCHHHHhhCCCC--eEEE
Confidence            45567766665543 456778888888765322  2346788888875 99999754  236899999999987  9999


Q ss_pred             EccccCCccChhHHHhC--CeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEE
Q 019387           92 NMAVGYNNVDVNAANKY--GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (342)
Q Consensus        92 ~~~~G~d~id~~~~~~~--gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvg  169 (342)
                      +.|+|+|+||+++|+++  ||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|... .....+.+|+|+|||
T Consensus        90 ~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-~~~~~~~~l~g~tvg  168 (364)
T 2j6i_A           90 VAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVA-AIAKDAYDIEGKTIA  168 (364)
T ss_dssp             ESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHH-HHHTTCCCSTTCEEE
T ss_pred             ECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcC-cccCCcccCCCCEEE
Confidence            99999999999999999  999999999999999999999999999999999999999988521 111246799999999


Q ss_pred             EEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCc
Q 019387          170 VIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (342)
Q Consensus       170 IvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~  248 (342)
                      |||+|+||+.+|+++ ++|||+ |++||+++......  ..            .+.....++++++++||+|++|+|+++
T Consensus       169 IIG~G~IG~~vA~~l-~~~G~~~V~~~d~~~~~~~~~--~~------------~g~~~~~~l~ell~~aDvV~l~~P~t~  233 (364)
T 2j6i_A          169 TIGAGRIGYRVLERL-VPFNPKELLYYDYQALPKDAE--EK------------VGARRVENIEELVAQADIVTVNAPLHA  233 (364)
T ss_dssp             EECCSHHHHHHHHHH-GGGCCSEEEEECSSCCCHHHH--HH------------TTEEECSSHHHHHHTCSEEEECCCCST
T ss_pred             EECcCHHHHHHHHHH-HhCCCcEEEEECCCccchhHH--Hh------------cCcEecCCHHHHHhcCCEEEECCCCCh
Confidence            999999999999997 899997 99999876432111  00            012233589999999999999999999


Q ss_pred             ccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC------------C---Ccccccccc
Q 019387          249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE------------L---GFSSFKHIS  313 (342)
Q Consensus       249 ~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP------------~---~~~~tPhia  313 (342)
                      +|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|+|+||+||||++||            |   |+++|||+|
T Consensus       234 ~t~~li~~~~l~~mk~ga~lIn~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia  313 (364)
T 2j6i_A          234 GTKGLINKELLSKFKKGAWLVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYS  313 (364)
T ss_dssp             TTTTCBCHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCG
T ss_pred             HHHHHhCHHHHhhCCCCCEEEECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccC
Confidence            9999999999999999999999999999999999999999999999999999999            5   899999999


Q ss_pred             ccccccccccccCchhhcccccccc
Q 019387          314 TQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       314 ~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      ++|.+..  ..+....++|...+++
T Consensus       314 ~~t~e~~--~~~~~~~~~nl~~~~~  336 (364)
T 2j6i_A          314 GTTLDAQ--TRYAQGTVNILESFFT  336 (364)
T ss_dssp             GGSHHHH--HHHHHHHHHHHHHHHT
T ss_pred             cCCHHHH--HHHHHHHHHHHHHHHc
Confidence            9998864  5566667777766653

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=100.00  E-value=7.4e-57  Score=426.88  Aligned_cols=283  Identities=18%  Similarity=0.189  Sum_probs=237.2

Q ss_pred             CceEEEEeCCCC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEE
Q 019387           14 GKYRVVSTKPMP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        14 ~~~~vl~~~~~~-~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~   92 (342)
                      +.|||++..+.+ .+.|.+.+++..+++++....+     ++    .. ++|+++++.   .+++++++ |++  |+|++
T Consensus         2 ~~mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~~~-----~~----~~-~ad~~i~~~---~~~~~l~~-~~L--k~I~~   65 (315)
T 3pp8_A            2 NAMEIIFYHPTFNAAWWVNALEKALPHARVREWKV-----GD----NN-PADYALVWQ---PPVEMLAG-RRL--KAVFV   65 (315)
T ss_dssp             CCEEEEEECSSSCHHHHHHHHHHHSTTEEEEECCT-----TC----CS-CCSEEEESS---CCHHHHTT-CCC--SEEEE
T ss_pred             CceEEEEEcCCCchHHHHHHHHHHCCCCEEEecCC-----CC----cc-CcEEEEECC---CCHHHhCC-CCc--eEEEE
Confidence            348898877654 3568888988877777644322     11    22 599999884   46899988 877  99999


Q ss_pred             ccccCCcc-C-hhH---HHhCCeeEecCCCCC-chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCC
Q 019387           93 MAVGYNNV-D-VNA---ANKYGIAVGNTPGVL-TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQ  166 (342)
Q Consensus        93 ~~~G~d~i-d-~~~---~~~~gI~V~n~~~~~-~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gk  166 (342)
                      .|+|+|+| | +++   +.++||+|+|+++.+ +.+||||+++++|++.|++..+++.+++|.|..+     .+++++|+
T Consensus        66 ~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~-----~~~~l~g~  140 (315)
T 3pp8_A           66 LGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL-----PEYTREEF  140 (315)
T ss_dssp             SSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-----CCCCSTTC
T ss_pred             CCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC-----CCCCcCCC
Confidence            99999999 7 886   678999999999874 8999999999999999999999999999998653     35789999


Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      ||||||+|+||+++|+++ ++|||+|++||+++... +             +.  .......++++++++||+|++|+|+
T Consensus       141 tvGIiG~G~IG~~vA~~l-~~~G~~V~~~dr~~~~~-~-------------~~--~~~~~~~~l~ell~~aDiV~l~~Pl  203 (315)
T 3pp8_A          141 SVGIMGAGVLGAKVAESL-QAWGFPLRCWSRSRKSW-P-------------GV--ESYVGREELRAFLNQTRVLINLLPN  203 (315)
T ss_dssp             CEEEECCSHHHHHHHHHH-HTTTCCEEEEESSCCCC-T-------------TC--EEEESHHHHHHHHHTCSEEEECCCC
T ss_pred             EEEEEeeCHHHHHHHHHH-HHCCCEEEEEcCCchhh-h-------------hh--hhhcccCCHHHHHhhCCEEEEecCC
Confidence            999999999999999997 89999999999886531 0             00  0011125899999999999999999


Q ss_pred             CcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccccccc
Q 019387          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQD  316 (342)
Q Consensus       247 ~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~  316 (342)
                      |++|+++|+++.|+.||+|++|||+|||++||++||++||++|+|+||+||||++||          ||+++|||+|++|
T Consensus       204 t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t  283 (315)
T 3pp8_A          204 TAQTVGIINSELLDQLPDGAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVT  283 (315)
T ss_dssp             CGGGTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCC
T ss_pred             chhhhhhccHHHHhhCCCCCEEEECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCccc
Confidence            999999999999999999999999999999999999999999999999999999999          7999999999999


Q ss_pred             cccccccccCchhhcccccccc
Q 019387          317 RATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       317 ~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      .+    ..+.+..++|...+++
T Consensus       284 ~~----~~~~~~~~~ni~~~~~  301 (315)
T 3pp8_A          284 RP----AEAIDYISRTITQLEK  301 (315)
T ss_dssp             CH----HHHHHHHHHHHHHHHH
T ss_pred             HH----HHHHHHHHHHHHHHHc
Confidence            75    2456667777766653

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=100.00  E-value=2.6e-55  Score=419.37  Aligned_cols=294  Identities=27%  Similarity=0.380  Sum_probs=252.9

Q ss_pred             CCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHH-HHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEE
Q 019387           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVED-IIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (342)
Q Consensus        13 ~~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e-~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~   91 (342)
                      |++++|+++.++++. +++.|++. +++.....   ..+.++ +.+.+. ++|+++++...++++++++++|+|  |+|+
T Consensus        21 m~~~~vl~~~~~~~~-~~~~l~~~-~~~~~~~~---~~~~~~~~~~~~~-~~d~~i~~~~~~~~~~~l~~~p~L--k~I~   92 (333)
T 3ba1_A           21 MEAIGVLMMCPMSTY-LEQELDKR-FKLFRYWT---QPAQRDFLALQAE-SIRAVVGNSNAGADAELIDALPKL--EIVS   92 (333)
T ss_dssp             -CCCEEEECSCCCHH-HHHHHHHH-SEEEEGGG---CSSHHHHHHHHTT-TEEEEEECSSSCBCHHHHHHCTTC--CEEE
T ss_pred             CCCCEEEEeCCCCHH-HHHHHHhc-CCEEEecC---CCChHHHHHHHhC-CCEEEEEcCCCCCCHHHHhhCCCC--cEEE
Confidence            445789999887764 56777654 56654321   124455 455555 599999877678999999999987  9999


Q ss_pred             EccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEE
Q 019387           92 NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (342)
Q Consensus        92 ~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIv  171 (342)
                      +.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|.. . ....+.+++|++||||
T Consensus        93 ~~~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~-~-~~~~~~~l~g~~vgII  170 (333)
T 3ba1_A           93 SFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKF-G-DFKLTTKFSGKRVGII  170 (333)
T ss_dssp             ESSSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGG-C-CCCCCCCCTTCCEEEE
T ss_pred             EcCccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCc-c-ccccccccCCCEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999852 1 1234689999999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019387          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~  251 (342)
                      |+|+||+.+|+++ ++||++|++||+++...                   .++....++++++++||+|++|+|.+++|+
T Consensus       171 G~G~iG~~vA~~l-~~~G~~V~~~dr~~~~~-------------------~g~~~~~~l~ell~~aDvVil~vP~~~~t~  230 (333)
T 3ba1_A          171 GLGRIGLAVAERA-EAFDCPISYFSRSKKPN-------------------TNYTYYGSVVELASNSDILVVACPLTPETT  230 (333)
T ss_dssp             CCSHHHHHHHHHH-HTTTCCEEEECSSCCTT-------------------CCSEEESCHHHHHHTCSEEEECSCCCGGGT
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEECCCchhc-------------------cCceecCCHHHHHhcCCEEEEecCCChHHH
Confidence            9999999999997 79999999999987531                   012234689999999999999999999999


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCccccccccccccccccc
Q 019387          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRATSCP  322 (342)
Q Consensus       252 ~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~~~~  322 (342)
                      ++++++.|+.||+|++|||++||.++|+++|+++|++|++++|+||||+.||         ||+++|||+++.|.+..  
T Consensus       231 ~li~~~~l~~mk~gailIn~srG~~vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~~~L~~~~nviltPH~~~~t~e~~--  308 (333)
T 3ba1_A          231 HIINREVIDALGPKGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVPEKLFGLENVVLLPHVGSGTVETR--  308 (333)
T ss_dssp             TCBCHHHHHHHCTTCEEEECSCGGGBCHHHHHHHHHHTSSCEEEESCCTTTTCCCGGGGGCTTEEECSSCTTCSHHHH--
T ss_pred             HHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHcCCCeEEEEecCCCCCCCcchhhcCCCEEECCcCCCCCHHHH--
Confidence            9999999999999999999999999999999999999999999999999999         79999999999998865  


Q ss_pred             cccCchhhcccccccc
Q 019387          323 KLTREWPIYDNSCCIR  338 (342)
Q Consensus       323 ~~~~~~~~~~~~~~~~  338 (342)
                      ..+.++.++|...+++
T Consensus       309 ~~~~~~~~~nl~~~~~  324 (333)
T 3ba1_A          309 KVMADLVVGNLEAHFS  324 (333)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            7778888888877764

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=100.00  E-value=1.7e-54  Score=414.03  Aligned_cols=305  Identities=29%  Similarity=0.401  Sum_probs=259.3

Q ss_pred             CCCCceEEEEeCCCCchHHHHHHHhC-CCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHh-hccCCc
Q 019387           11 NPNGKYRVVSTKPMPGTRWINLLIEQ-DCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAAL-SRAGGK   88 (342)
Q Consensus        11 ~~~~~~~vl~~~~~~~~~~~~~l~~~-~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l-~~l~~k   88 (342)
                      .|+++|+|+++.++++ .+++.|++. ++++.... .+...+++++.+.+.+ +|+++++...++++++++++ |++  |
T Consensus         4 ~~~~~~~il~~~~~~~-~~~~~l~~~~~~~v~~~~-~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~l~~~~~~L--k   78 (330)
T 2gcg_A            4 RPVRLMKVFVTRRIPA-EGRVALARAADCEVEQWD-SDEPIPAKELERGVAG-AHGLLCLLSDHVDKRILDAAGANL--K   78 (330)
T ss_dssp             ---CCEEEEESSCCCH-HHHHHHHHCTTEEEEECC-SSSCCCHHHHHHHHTT-CSEEEECTTSCBCHHHHHHHCTTC--C
T ss_pred             CCCCCCEEEEECCCCH-HHHHHHHhcCCceEEEec-CCCCCCHHHHHHHhcC-CeEEEECCCCCCCHHHHHhcCCCc--e
Confidence            4667889999987765 457788765 35665432 2234578899888875 99999876668999999999 877  9


Q ss_pred             eEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeE
Q 019387           89 AFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTV  168 (342)
Q Consensus        89 ~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktv  168 (342)
                      +|++.|+|+|+||+++++++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|..|.+....|.++.|++|
T Consensus        79 ~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~v  158 (330)
T 2gcg_A           79 VISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTV  158 (330)
T ss_dssp             EEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEE
T ss_pred             EEEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEE
Confidence            99999999999999999999999999999999999999999999999999999999999999877544445789999999


Q ss_pred             EEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCc
Q 019387          169 GVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK  248 (342)
Q Consensus       169 gIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~  248 (342)
                      ||||+|.||+.+|+++ ++||++|++||+++......  ..            .+... .++++++++||+|++|+|.++
T Consensus       159 gIIG~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~~~~--~~------------~g~~~-~~l~e~l~~aDvVi~~vp~~~  222 (330)
T 2gcg_A          159 GIIGLGRIGQAIARRL-KPFGVQRFLYTGRQPRPEEA--AE------------FQAEF-VSTPELAAQSDFIVVACSLTP  222 (330)
T ss_dssp             EEECCSHHHHHHHHHH-GGGTCCEEEEESSSCCHHHH--HT------------TTCEE-CCHHHHHHHCSEEEECCCCCT
T ss_pred             EEECcCHHHHHHHHHH-HHCCCEEEEECCCCcchhHH--Hh------------cCcee-CCHHHHHhhCCEEEEeCCCCh
Confidence            9999999999999997 79999999999876432111  00            01122 389999999999999999999


Q ss_pred             ccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC----------CCccccccccccccc
Q 019387          249 TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHISTQDRA  318 (342)
Q Consensus       249 ~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~~~~~  318 (342)
                      +|+++++++.++.||+|++|||++||.++|+++|.++|++|++.||++|||+.||          +|+++|||+++.|.+
T Consensus       223 ~t~~~i~~~~~~~mk~gailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~  302 (330)
T 2gcg_A          223 ATEGLCNKDFFQKMKETAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHR  302 (330)
T ss_dssp             TTTTCBSHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHH
T ss_pred             HHHHhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHH
Confidence            9999999999999999999999999999999999999999999999999999998          699999999999987


Q ss_pred             cccccccCchhhcccccccc
Q 019387          319 TSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       319 ~~~~~~~~~~~~~~~~~~~~  338 (342)
                      ..  ..+....++|...+++
T Consensus       303 ~~--~~~~~~~~~n~~~~~~  320 (330)
T 2gcg_A          303 TR--NTMSLLAANNLLAGLR  320 (330)
T ss_dssp             HH--HHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHHHHHc
Confidence            54  6677777777776653

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=100.00  E-value=2.7e-55  Score=421.25  Aligned_cols=304  Identities=25%  Similarity=0.332  Sum_probs=248.2

Q ss_pred             eCCCCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCce
Q 019387           10 WNPNGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA   89 (342)
Q Consensus        10 ~~~~~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~   89 (342)
                      ..++++++|++..........+.++. ..++..+.    ..+.+|+.+.+.+++|+++++...++++++++++|+|  |+
T Consensus        16 ~~~~~kp~i~~l~~~~~~~~~~~l~~-~~~~~~~~----~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~L--k~   88 (347)
T 1mx3_A           16 PRGSHMPLVALLDGRDCTVEMPILKD-VATVAFCD----AQSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RI   88 (347)
T ss_dssp             -----CCEEEESSCSCCTTTHHHHTT-TCEEEECC----CSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CE
T ss_pred             CCCCCCCEEEEEcCCcchhhHHHhhc-cceEEecC----CCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhCCCC--CE
Confidence            34567888888754322112456654 45666442    2355666655422478888776678999999999987  99


Q ss_pred             EEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCC----cccccccCC
Q 019387           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPN----LFVGNLLKG  165 (342)
Q Consensus        90 i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~----~~~~~~L~g  165 (342)
                      |++.|+|+|+||+++|+++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|......    ...+.+++|
T Consensus        89 I~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g  168 (347)
T 1mx3_A           89 IVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRG  168 (347)
T ss_dssp             EEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTT
T ss_pred             EEEcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999988421100    011268999


Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +||||||+|+||+.+|+++ ++|||+|++||+++....+.   .            .+.....++++++++||+|++|+|
T Consensus       169 ~tvGIIG~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~------------~g~~~~~~l~ell~~aDvV~l~~P  232 (347)
T 1mx3_A          169 ETLGIIGLGRVGQAVALRA-KAFGFNVLFYDPYLSDGVER---A------------LGLQRVSTLQDLLFHSDCVTLHCG  232 (347)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTTTCEEEEECTTSCTTHHH---H------------HTCEECSSHHHHHHHCSEEEECCC
T ss_pred             CEEEEEeECHHHHHHHHHH-HHCCCEEEEECCCcchhhHh---h------------cCCeecCCHHHHHhcCCEEEEcCC
Confidence            9999999999999999997 79999999999986532111   0            011233589999999999999999


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-----------CCccccccccc
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-----------LGFSSFKHIST  314 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-----------~~~~~tPhia~  314 (342)
                      ++++|+++|+++.|+.||+|++|||++||+++|+++|+++|++|+|.||+||||+.||           ||+++|||+++
T Consensus       233 ~t~~t~~li~~~~l~~mk~gailIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~  312 (347)
T 1mx3_A          233 LNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  312 (347)
T ss_dssp             CCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             CCHHHHHHhHHHHHhcCCCCCEEEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHH
Confidence            9999999999999999999999999999999999999999999999999999999999           68999999999


Q ss_pred             cccccccccccCchhhcccccccc
Q 019387          315 QDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       315 ~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      +|.+..  ..+.++.++|...+++
T Consensus       313 ~t~~~~--~~~~~~~~~ni~~~~~  334 (347)
T 1mx3_A          313 YSEQAS--IEMREEAAREIRRAIT  334 (347)
T ss_dssp             CCHHHH--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHc
Confidence            998866  7788888888877764

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=100.00  E-value=5.3e-55  Score=421.60  Aligned_cols=270  Identities=25%  Similarity=0.341  Sum_probs=229.6

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEc
Q 019387           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        14 ~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~   93 (342)
                      +|||||++..++.  ..+.+++.+ +++...  +...+.++    +. ++|+++++..+++++++++ .+++  |+|++.
T Consensus         2 ~mmkIl~~~~~p~--~~~~~~~~~-~v~~~~--~~~~~~~~----l~-~ad~li~~~~~~v~~~ll~-~~~L--k~I~~~   68 (381)
T 3oet_A            2 NAMKILVDENMPY--ARELFSRLG-EVKAVP--GRPIPVEE----LN-HADALMVRSVTKVNESLLS-GTPI--NFVGTA   68 (381)
T ss_dssp             CCCEEEEETTSTT--HHHHHTTSS-EEEEEC--C---CHHH----HT-TCSEEEECTTSCBSHHHHT-TSCC--CEEEES
T ss_pred             CceEEEECCCCcH--HHHHHhhCC-cEEEeC--CCCCCHHH----HC-CCEEEEECCCCCCCHHHHc-CCCC--EEEEEc
Confidence            4689999987764  245665554 776543  23345554    34 4999999877789999998 4545  999999


Q ss_pred             cccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEec
Q 019387           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA  173 (342)
Q Consensus        94 ~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~  173 (342)
                      |+|+||||+++++++||.|+|+||+|+.+||||+++++|++.|+.                     |.+|+||||||||+
T Consensus        69 ~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~---------------------g~~l~gktvGIIGl  127 (381)
T 3oet_A           69 TAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD---------------------GFSLRDRTIGIVGV  127 (381)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT---------------------TCCGGGCEEEEECC
T ss_pred             cccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc---------------------CCccCCCEEEEEeE
Confidence            999999999999999999999999999999999999999999852                     35799999999999


Q ss_pred             CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcc----
Q 019387          174 GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----  249 (342)
Q Consensus       174 G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~----  249 (342)
                      |+||+++|+++ ++|||+|++||++....               .    ......++++++++||+|++|+|++++    
T Consensus       128 G~IG~~vA~~l-~a~G~~V~~~d~~~~~~---------------~----~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~  187 (381)
T 3oet_A          128 GNVGSRLQTRL-EALGIRTLLCDPPRAAR---------------G----DEGDFRTLDELVQEADVLTFHTPLYKDGPYK  187 (381)
T ss_dssp             SHHHHHHHHHH-HHTTCEEEEECHHHHHT---------------T----CCSCBCCHHHHHHHCSEEEECCCCCCSSTTC
T ss_pred             CHHHHHHHHHH-HHCCCEEEEECCChHHh---------------c----cCcccCCHHHHHhhCCEEEEcCcCCcccccc
Confidence            99999999997 89999999999854321               0    011347999999999999999999999    


Q ss_pred             cccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--------CCcccccccccccccccc
Q 019387          250 TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--------LGFSSFKHISTQDRATSC  321 (342)
Q Consensus       250 t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--------~~~~~tPhia~~~~~~~~  321 (342)
                      |+++|+++.|++||+|++|||+|||++||++||++||++|++.||+||||++||        .++++|||+|++|.+.. 
T Consensus       188 T~~li~~~~l~~mk~gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~EP~~~~~L~~~~~i~TPHiag~t~e~~-  266 (381)
T 3oet_A          188 TLHLADETLIRRLKPGAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEPDLNVALLEAVDIGTSHIAGYTLEGK-  266 (381)
T ss_dssp             CTTSBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHHHSSEECSSCTTCCHHHH-
T ss_pred             chhhcCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccCCCCcchhhhCCEEECCccCcCcHHHH-
Confidence            999999999999999999999999999999999999999999999999999999        24789999999998876 


Q ss_pred             ccccCchhhccccccccc
Q 019387          322 PKLTREWPIYDNSCCIRM  339 (342)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~  339 (342)
                       ..+..+.++|...++.-
T Consensus       267 -~~~~~~~~~~l~~~l~~  283 (381)
T 3oet_A          267 -ARGTTQVFEAYSAFIGR  283 (381)
T ss_dssp             -HHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHHHHHHHcC
Confidence             77778888888777653

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=100.00  E-value=1.4e-53  Score=408.14  Aligned_cols=298  Identities=35%  Similarity=0.552  Sum_probs=256.6

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 019387           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        16 ~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~   95 (342)
                      ++|+++.++++ .+++.|++. +++++.. .....+.+++.+.+.+ +|+++++...++++++++++|+|  |+|++.|+
T Consensus         3 ~~il~~~~~~~-~~~~~l~~~-~~~~~~~-~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~l~~~~~L--k~I~~~~~   76 (334)
T 2dbq_A            3 PKVFITREIPE-VGIKMLEDE-FEVEVWG-DEKEIPREILLKKVKE-VDALVTMLSERIDKEVFENAPKL--RIVANYAV   76 (334)
T ss_dssp             CEEEESSCCCH-HHHHHHHTT-SEEEECC-CSSCCCHHHHHHHTTS-CSEEEECTTSCBCHHHHHTCTTC--CEEEESSS
T ss_pred             cEEEEecCCCH-HHHHHHHhc-CCEEEec-CCCCCCHHHHHHHhcC-cEEEEEcCCCCCCHHHHhhCCCc--eEEEECCc
Confidence            57888877765 457777654 5776533 2223578888888875 99999887678999999999987  99999999


Q ss_pred             cCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCC----CCCCCcccccccCCCeEEEE
Q 019387           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD----GWLPNLFVGNLLKGQTVGVI  171 (342)
Q Consensus        96 G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~----~w~~~~~~~~~L~gktvgIv  171 (342)
                      |+|+||+++++++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|.    .|.+....+.++.|++||||
T Consensus        77 G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgII  156 (334)
T 2dbq_A           77 GYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGII  156 (334)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEE
T ss_pred             ccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEE
Confidence            99999999999999999999999999999999999999999999999999999996    56543345789999999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019387          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~  251 (342)
                      |+|.||+.+|+++ ++||++|++||++++..  .. ..+       +     . ...++++++++||+|++|+|.+++|+
T Consensus       157 G~G~iG~~iA~~l-~~~G~~V~~~d~~~~~~--~~-~~~-------g-----~-~~~~l~~~l~~aDvVil~vp~~~~t~  219 (334)
T 2dbq_A          157 GLGRIGQAIAKRA-KGFNMRILYYSRTRKEE--VE-REL-------N-----A-EFKPLEDLLRESDFVVLAVPLTRETY  219 (334)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSSCCHH--HH-HHH-------C-----C-EECCHHHHHHHCSEEEECCCCCTTTT
T ss_pred             ccCHHHHHHHHHH-HhCCCEEEEECCCcchh--hH-hhc-------C-----c-ccCCHHHHHhhCCEEEECCCCChHHH
Confidence            9999999999997 79999999999987541  11 111       1     1 12589999999999999999999999


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCccccccccccccccccc
Q 019387          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRATSCP  322 (342)
Q Consensus       252 ~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~~~~  322 (342)
                      ++++++.++.||+|++|||++||.++|+++|.++|++|++.||++|||+.||         ||+++|||+++.|.+..  
T Consensus       220 ~~i~~~~~~~mk~~ailIn~srg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP~~~~~L~~~~~vi~tPh~~~~t~~~~--  297 (334)
T 2dbq_A          220 HLINEERLKLMKKTAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPYYNEELFKLDNVVLTPHIGSASFGAR--  297 (334)
T ss_dssp             TCBCHHHHHHSCTTCEEEECSCGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCCHHHHHCTTEEECSSCTTCSHHHH--
T ss_pred             HhhCHHHHhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEecCCCCCCCCCchhhcCCCEEECCccCCCcHHHH--
Confidence            9999999999999999999999999999999999999999999999999997         79999999999998865  


Q ss_pred             cccCchhhcccccccc
Q 019387          323 KLTREWPIYDNSCCIR  338 (342)
Q Consensus       323 ~~~~~~~~~~~~~~~~  338 (342)
                      ..+.+..++|...+++
T Consensus       298 ~~~~~~~~~n~~~~~~  313 (334)
T 2dbq_A          298 EGMAELVAKNLIAFKR  313 (334)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            6777788888777654

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=100.00  E-value=3.6e-54  Score=414.34  Aligned_cols=302  Identities=24%  Similarity=0.318  Sum_probs=251.1

Q ss_pred             CCceEEEEeCC-CC-chHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhC----CCceEEEec------CCCCccHHHHH
Q 019387           13 NGKYRVVSTKP-MP-GTRWINLLIEQDCRVEICTQKKTILSVEDIIALIG----DKCDGVIGQ------LTEDWGETLFA   80 (342)
Q Consensus        13 ~~~~~vl~~~~-~~-~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~----~~~d~vi~~------~~~~~~~e~l~   80 (342)
                      |++++||++.+ ++ ....++.|++. +++....    ..+++++.+.+.    +++|+++..      ...++++++++
T Consensus         1 m~~~~vl~~~~~~~~~~~~~~~l~~~-~~~~~~~----~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~   75 (348)
T 2w2k_A            1 MPRPRVLLLGDPARHLDDLWSDFQQK-FEVIPAN----LTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLIS   75 (348)
T ss_dssp             -CCCEEEECSSCCSSCHHHHHHHHHH-SEEEECC----CCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHT
T ss_pred             CCCcEEEEECCccccChHHHHHHHhc-ceEEecC----CCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHH
Confidence            34578998877 53 23345667553 5775432    247899988886    148988864      23589999999


Q ss_pred             Hhh-ccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCC---CCCCC-C
Q 019387           81 ALS-RAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGL---YDGWL-P  155 (342)
Q Consensus        81 ~l~-~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~---w~~w~-~  155 (342)
                      ++| +|  |+|++.|+|+|+||+++|+++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.   |..+. .
T Consensus        76 ~~~~~L--k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~  153 (348)
T 2w2k_A           76 HLPSSL--KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLE  153 (348)
T ss_dssp             TSCTTC--CEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             hcccCc--eEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccc
Confidence            998 46  99999999999999999999999999999999999999999999999999999999999998   73210 0


Q ss_pred             CcccccccCCCeEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh
Q 019387          156 NLFVGNLLKGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (342)
Q Consensus       156 ~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll  234 (342)
                      ....+.+|+|++|||||+|+||+.+|+++ + +||++|++||+++......  ..+            +.....++++++
T Consensus       154 ~~~~~~~l~g~~vgIIG~G~IG~~vA~~l-~~~~G~~V~~~d~~~~~~~~~--~~~------------g~~~~~~l~ell  218 (348)
T 2w2k_A          154 IGKSAHNPRGHVLGAVGLGAIQKEIARKA-VHGLGMKLVYYDVAPADAETE--KAL------------GAERVDSLEELA  218 (348)
T ss_dssp             HHTTCCCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEECSSCCCHHHH--HHH------------TCEECSSHHHHH
T ss_pred             ccccCcCCCCCEEEEEEECHHHHHHHHHH-HHhcCCEEEEECCCCcchhhH--hhc------------CcEEeCCHHHHh
Confidence            11246799999999999999999999996 8 9999999999987532111  000            111234899999


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CC
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LG  305 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~  305 (342)
                      ++||+|++|+|.+++|+++|+++.++.||+|++|||++||+++|+++|.++|++|++.||++|||+.||         ||
T Consensus       219 ~~aDvVil~vp~~~~t~~li~~~~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~n  298 (348)
T 2w2k_A          219 RRSDCVSVSVPYMKLTHHLIDEAFFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQVSKELIEMKH  298 (348)
T ss_dssp             HHCSEEEECCCCSGGGTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTTSCCHHHHTSSS
T ss_pred             ccCCEEEEeCCCChHHHHHhhHHHHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCCCCCchhhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999997         79


Q ss_pred             ccccccccccccccccccccCchhhcccccccc
Q 019387          306 FSSFKHISTQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       306 ~~~tPhia~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      +++|||+++.|.+..  ..+.+..++|...+++
T Consensus       299 viltPH~~~~t~e~~--~~~~~~~~~ni~~~~~  329 (348)
T 2w2k_A          299 VTLTTHIGGVAIETF--HEFERLTMTNIDRFLL  329 (348)
T ss_dssp             EEECCSCTTCSHHHH--HHHHHHHHHHHHHHHH
T ss_pred             EEEcCcCCCCCHHHH--HHHHHHHHHHHHHHHc
Confidence            999999999999865  6778888888877764

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=100.00  E-value=2.1e-53  Score=406.65  Aligned_cols=294  Identities=29%  Similarity=0.424  Sum_probs=253.3

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~   94 (342)
                      +++||++.+++++ .++.|++. +++++..    ..+.+++.+.+.+ +|++++....++++++++++|++  |+|++.|
T Consensus         2 ~~~il~~~~~~~~-~~~~l~~~-~~~~~~~----~~~~~~~~~~~~~-~d~~i~~~~~~~~~~~l~~~~~L--k~I~~~~   72 (333)
T 2d0i_A            2 RPKVGVLLKMKRE-ALEELKKY-ADVEIIL----YPSGEELKGVIGR-FDGIIVSPTTKITREVLENAERL--KVISCHS   72 (333)
T ss_dssp             CSEEEECSCCCHH-HHHHHHTT-SEEEECC----SCCHHHHHHHGGG-CSEEEECTTSCBCHHHHTTCTTC--CEEEESS
T ss_pred             CcEEEEECCCCHH-HHHHHHhc-CCEEEeC----CCCHHHHHHHhcC-CEEEEECCCCCCCHHHHhhCCCc--eEEEECC
Confidence            3578888887764 57778664 5776532    2578888888875 99999776678999999999987  9999999


Q ss_pred             ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccc----cccCCCeEEE
Q 019387           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVG----NLLKGQTVGV  170 (342)
Q Consensus        95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~----~~L~gktvgI  170 (342)
                      +|+|+||+++++++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|..|. ....|    .+|.|++|||
T Consensus        73 ~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~~~~~l~g~~vgI  151 (333)
T 2d0i_A           73 AGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHA-KIWTGFKRIESLYGKKVGI  151 (333)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHH-HHHTTSCCCCCSTTCEEEE
T ss_pred             cccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCc-ccccCCcccCCCCcCEEEE
Confidence            999999999999999999999999999999999999999999999999999999986542 11235    7899999999


Q ss_pred             EecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccc
Q 019387          171 IGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTT  250 (342)
Q Consensus       171 vG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t  250 (342)
                      ||+|+||+.+|+++ ++||++|++||++++.....   .+       +     .. ..++++++++||+|++|+|.+++|
T Consensus       152 IG~G~iG~~vA~~l-~~~G~~V~~~d~~~~~~~~~---~~-------g-----~~-~~~l~e~l~~aDiVil~vp~~~~t  214 (333)
T 2d0i_A          152 LGMGAIGKAIARRL-IPFGVKLYYWSRHRKVNVEK---EL-------K-----AR-YMDIDELLEKSDIVILALPLTRDT  214 (333)
T ss_dssp             ECCSHHHHHHHHHH-GGGTCEEEEECSSCCHHHHH---HH-------T-----EE-ECCHHHHHHHCSEEEECCCCCTTT
T ss_pred             EccCHHHHHHHHHH-HHCCCEEEEECCCcchhhhh---hc-------C-----ce-ecCHHHHHhhCCEEEEcCCCChHH
Confidence            99999999999997 79999999999987642110   10       1     11 248999999999999999999999


Q ss_pred             ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------C-Cccccccccccccccc
Q 019387          251 YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------L-GFSSFKHISTQDRATS  320 (342)
Q Consensus       251 ~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~-~~~~tPhia~~~~~~~  320 (342)
                      +++++++.++.||+| +|||++||.++|+++|.++|++|+++||++|||++||         | |+++|||+++.|.+..
T Consensus       215 ~~~i~~~~~~~mk~g-ilin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP~~~~~L~~~~~nviltPh~~~~t~~~~  293 (333)
T 2d0i_A          215 YHIINEERVKKLEGK-YLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQ  293 (333)
T ss_dssp             TTSBCHHHHHHTBTC-EEEECSCGGGBCHHHHHHHHHTTCBCEEEESCCSSSSCSCCGGGGCTTTEEECCSCTTCCHHHH
T ss_pred             HHHhCHHHHhhCCCC-EEEECCCCcccCHHHHHHHHHcCCceEEEecCCCCCCCCCchHHcCCCCEEEcCccCCCcHHHH
Confidence            999999999999999 9999999999999999999999999999999999998         6 9999999999998865


Q ss_pred             cccccCchhhcccccccc
Q 019387          321 CPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       321 ~~~~~~~~~~~~~~~~~~  338 (342)
                        ..+.++.++|...+++
T Consensus       294 --~~~~~~~~~n~~~~~~  309 (333)
T 2d0i_A          294 --EDVGFRAVENLLKVLR  309 (333)
T ss_dssp             --HHHHHHHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHHHHHc
Confidence              6777788888777654

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=100.00  E-value=1.7e-53  Score=402.21  Aligned_cols=274  Identities=20%  Similarity=0.277  Sum_probs=234.1

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 019387           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        16 ~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~   95 (342)
                      |+||++.++++ .+++.|++.++++.    .          +.+. ++|+++++.   .+.++++++|+|  |+|++.|+
T Consensus         1 m~il~~~~~~~-~~~~~l~~~~~~v~----~----------~~~~-~~d~~i~~~---~~~~~l~~~~~L--k~I~~~~~   59 (303)
T 1qp8_A            1 MELYVNFELPP-EAEEELRKYFKIVR----G----------GDLG-NVEAALVSR---ITAEELAKMPRL--KFIQVVTA   59 (303)
T ss_dssp             CEEECCSCCCH-HHHHHHHTTCEEEC----S----------SCCT-TBCCCCBSC---CCHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEccCCCH-HHHHHHHhcCCccc----h----------hhhC-CCEEEEECC---CCHHHHhhCCCC--cEEEECCc
Confidence            47888877765 45788877654442    1          1233 489888764   346899999987  99999999


Q ss_pred             cCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH
Q 019387           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (342)
Q Consensus        96 G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~  175 (342)
                      |+|+||++++ ++||.|+|+|++++.+||||+++++|++.|++..+++.+++|.|..+.    .+.++.|+||||||+|+
T Consensus        60 G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~----~~~~l~g~~vgIIG~G~  134 (303)
T 1qp8_A           60 GLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLGLGE  134 (303)
T ss_dssp             CCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEESCST
T ss_pred             CcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----CCCCCCCCEEEEEccCH
Confidence            9999999985 799999999999999999999999999999999999999999986431    23589999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccC
Q 019387          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLIN  255 (342)
Q Consensus       176 IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~  255 (342)
                      ||+++|+++ ++|||+|++||+++. .  .                 +.....++++++++||+|++|+|++++|+++|+
T Consensus       135 IG~~~A~~l-~~~G~~V~~~dr~~~-~--~-----------------~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~  193 (303)
T 1qp8_A          135 IGTRVGKIL-AALGAQVRGFSRTPK-E--G-----------------PWRFTNSLEEALREARAAVCALPLNKHTRGLVK  193 (303)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECSSCC-C--S-----------------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBC
T ss_pred             HHHHHHHHH-HHCCCEEEEECCCcc-c--c-----------------CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhC
Confidence            999999997 799999999998764 1  0                 111346899999999999999999999999999


Q ss_pred             HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecC-CCCC----------CCcccccccccc--ccccccc
Q 019387          256 KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF-EVTE----------LGFSSFKHISTQ--DRATSCP  322 (342)
Q Consensus       256 ~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~-~~EP----------~~~~~tPhia~~--~~~~~~~  322 (342)
                      ++.|+.||+|++|||+|||+++|+++|+++|++|+|.||+|||| ++||          ||+++|||++++  |.+..  
T Consensus       194 ~~~l~~mk~gailin~srg~~vd~~aL~~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~--  271 (303)
T 1qp8_A          194 YQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVW--  271 (303)
T ss_dssp             HHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHH--
T ss_pred             HHHHhhCCCCCEEEECCCCcccCHHHHHHHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHH--
Confidence            99999999999999999999999999999999999999999999 8788          799999999998  66644  


Q ss_pred             cccCchhhcccccccc
Q 019387          323 KLTREWPIYDNSCCIR  338 (342)
Q Consensus       323 ~~~~~~~~~~~~~~~~  338 (342)
                      ..+.+..++|...+++
T Consensus       272 ~~~~~~~~~nl~~~~~  287 (303)
T 1qp8_A          272 RQMVMEAVRNLITYAT  287 (303)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc
Confidence            6667777888776654

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=100.00  E-value=4.7e-52  Score=419.86  Aligned_cols=294  Identities=28%  Similarity=0.363  Sum_probs=249.5

Q ss_pred             CCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEE
Q 019387           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        13 ~~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~   92 (342)
                      |++|+||++.++.+. .++.|++. +++++..    ..+++++.+.+.+ +|+++++..+++++++++++|+|  |+|++
T Consensus         2 m~~~~vl~~~~~~~~-~~~~l~~~-~~v~~~~----~~~~~~~~~~~~~-~d~li~~~~~~~~~~~l~~~~~L--k~i~~   72 (529)
T 1ygy_A            2 VSLPVVLIADKLAPS-TVAALGDQ-VEVRWVD----GPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVAR   72 (529)
T ss_dssp             -CCCEEEECSSCCGG-GGTTSCSS-SEEEECC----TTSHHHHHHHGGG-CSEEEECSSSCBCHHHHHTCTTC--CEEEE
T ss_pred             CCCcEEEEeCCCCHH-HHHHHhcC-ceEEEcC----CCCHHHHHHHhcC-CEEEEEcCCCCCCHHHHhhCCCC--cEEEE
Confidence            346789998888764 35666554 6776532    2578899888875 99999987778999999999987  99999


Q ss_pred             ccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEe
Q 019387           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIG  172 (342)
Q Consensus        93 ~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG  172 (342)
                      .|+|+|+||+++|+++||.|+|+|++|+.+||||+++++|++.|+++++++.+++|.|.+   ..+.|.+|+|++|||||
T Consensus        73 ~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~---~~~~~~~l~g~~vgIIG  149 (529)
T 1ygy_A           73 AGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKR---SSFSGTEIFGKTVGVVG  149 (529)
T ss_dssp             SSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCG---GGCCBCCCTTCEEEEEC
T ss_pred             CCcCcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcc---cCcCccccCCCEEEEEe
Confidence            999999999999999999999999999999999999999999999999999999998753   23457899999999999


Q ss_pred             cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCccccc
Q 019387          173 AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYH  252 (342)
Q Consensus       173 ~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~  252 (342)
                      +|+||+++|++| ++||++|++||++..... .  ..       .+     +.. .++++++++||+|++|+|.+++|++
T Consensus       150 ~G~IG~~vA~~l-~~~G~~V~~~d~~~~~~~-a--~~-------~g-----~~~-~~l~e~~~~aDvV~l~~P~~~~t~~  212 (529)
T 1ygy_A          150 LGRIGQLVAQRI-AAFGAYVVAYDPYVSPAR-A--AQ-------LG-----IEL-LSLDDLLARADFISVHLPKTPETAG  212 (529)
T ss_dssp             CSHHHHHHHHHH-HTTTCEEEEECTTSCHHH-H--HH-------HT-----CEE-CCHHHHHHHCSEEEECCCCSTTTTT
T ss_pred             eCHHHHHHHHHH-HhCCCEEEEECCCCChhH-H--Hh-------cC-----cEE-cCHHHHHhcCCEEEECCCCchHHHH
Confidence            999999999997 799999999999874211 1  00       01     112 3899999999999999999999999


Q ss_pred             ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC---------CCcccccccccccccccccc
Q 019387          253 LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQDRATSCPK  323 (342)
Q Consensus       253 li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~~~~~~~~~  323 (342)
                      +++++.+..||+|+++||++||+++|+++|+++|++|+++||++|||+.||         +++++|||+++.|.+..  .
T Consensus       213 ~i~~~~~~~~k~g~ilin~arg~iv~~~aL~~al~~g~i~ga~lDv~~~eP~~~~~L~~~~~vilTPh~~~~t~ea~--~  290 (529)
T 1ygy_A          213 LIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLGASTAEAQ--D  290 (529)
T ss_dssp             CBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCSSCBHHHH--H
T ss_pred             HhCHHHHhCCCCCCEEEECCCCchhhHHHHHHHHHcCCccEEEEeeccCCCCCCchHHhCCCEEEccccCCCCHHHH--H
Confidence            999999999999999999999999999999999999999999999999999         79999999998887653  3


Q ss_pred             ccCchhhccccccc
Q 019387          324 LTREWPIYDNSCCI  337 (342)
Q Consensus       324 ~~~~~~~~~~~~~~  337 (342)
                      .+....++|...++
T Consensus       291 ~~~~~~~~~l~~~l  304 (529)
T 1ygy_A          291 RAGTDVAESVRLAL  304 (529)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            33344444444433

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=100.00  E-value=7.2e-53  Score=394.84  Aligned_cols=240  Identities=22%  Similarity=0.294  Sum_probs=212.8

Q ss_pred             CceEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHH
Q 019387           62 KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (342)
Q Consensus        62 ~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~  141 (342)
                      ++|++++... ++      ++|+|  |+|++.|+|+|+||+++++++||.++| ++.++.+||||+++++|++.|++..+
T Consensus        34 ~ad~li~~~~-~~------~~~~L--k~I~~~~~G~d~id~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~  103 (290)
T 3gvx_A           34 DAEAQVIKDR-YV------LGKRT--KMIQAISAGVDHIDVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILEN  103 (290)
T ss_dssp             CCSEEEESSC-CC------CCSSC--CEEEECSSCCTTSCGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred             hhhhhhhhhh-hh------hhhhh--HHHHHHhcCCceeecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhh
Confidence            4899998432 32      67776  999999999999999999987776665 57899999999999999999999999


Q ss_pred             HHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC
Q 019387          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       142 ~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ++.+++|.|...     ...+|+|+||||||+|+||+++|+++ ++|||+|++||+++....                  
T Consensus       104 ~~~~~~g~w~~~-----~~~~l~g~tvGIIGlG~IG~~vA~~l-~~~G~~V~~~dr~~~~~~------------------  159 (290)
T 3gvx_A          104 NELMKAGIFRQS-----PTTLLYGKALGILGYGGIGRRVAHLA-KAFGMRVIAYTRSSVDQN------------------  159 (290)
T ss_dssp             HHHHHTTCCCCC-----CCCCCTTCEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSCCCTT------------------
T ss_pred             hhHhhhcccccC-----CceeeecchheeeccCchhHHHHHHH-HhhCcEEEEEeccccccc------------------
Confidence            999999998642     13689999999999999999999997 799999999999875310                  


Q ss_pred             ccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 019387          222 VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV  301 (342)
Q Consensus       222 ~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~  301 (342)
                       ......++++++++||+|++|+|++++|+++|+++.|+.||+|++|||+|||+++|+++|+++|++|++.+|+||||++
T Consensus       160 -~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~  238 (290)
T 3gvx_A          160 -VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWN  238 (290)
T ss_dssp             -CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCCTT
T ss_pred             -cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCCcchhhhhhhccceEEeeccccC
Confidence             0123469999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC-------CCcccccccc-ccccccccccccCchhhcccccccc
Q 019387          302 TE-------LGFSSFKHIS-TQDRATSCPKLTREWPIYDNSCCIR  338 (342)
Q Consensus       302 EP-------~~~~~tPhia-~~~~~~~~~~~~~~~~~~~~~~~~~  338 (342)
                      ||       ||+++|||+| ++|.+..  ..+.++.++|...+++
T Consensus       239 EP~~pL~~~~nvilTPHiag~~t~e~~--~~~~~~~~~ni~~~~~  281 (290)
T 3gvx_A          239 EPEITETNLRNAILSPHVAGGMSGEIM--DIAIQLAFENVRNFFE  281 (290)
T ss_dssp             TTSCCSCCCSSEEECCSCSSCBTTBCC--HHHHHHHHHHHHHHTC
T ss_pred             CcccchhhhhhhhcCccccCCccchHH--HHHHHHHHHHHHhhhc
Confidence            99       7999999999 8888855  7888889999887764

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.4e-51  Score=398.62  Aligned_cols=267  Identities=24%  Similarity=0.323  Sum_probs=225.8

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 019387           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        16 ~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~   95 (342)
                      |||+++..++.  ..+.+++.+ ++.....  ...+.+++    . ++|+++++..+++++++++ +|++  |+|++.|+
T Consensus         1 mkil~~~~~~~--~~~~~~~~~-~v~~~~~--~~~~~~~l----~-~ad~li~~~~~~~~~~~l~-~~~L--k~I~~~~~   67 (380)
T 2o4c_A            1 MRILADENIPV--VDAFFADQG-SIRRLPG--RAIDRAAL----A-EVDVLLVRSVTEVSRAALA-GSPV--RFVGTCTI   67 (380)
T ss_dssp             CEEEEETTCTT--HHHHHGGGS-EEEEECG--GGCSTTTT----T-TCSEEEECTTSCBCHHHHT-TSCC--CEEEECSS
T ss_pred             CEEEEecCchH--HHHHHHhCC-cEEEecC--CcCChHHH----C-CcEEEEEcCCCCCCHHHhc-CCCc--eEEEEcCc
Confidence            47888877654  245665544 6665432  12233332    3 5999999877789999998 8876  99999999


Q ss_pred             cCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH
Q 019387           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (342)
Q Consensus        96 G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~  175 (342)
                      |+||||+++++++||.|+|+||+|+.+||||+++++|++.|++                     +.+|+|+||||||+|+
T Consensus        68 G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~---------------------~~~l~g~tvGIIGlG~  126 (380)
T 2o4c_A           68 GTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVR---------------------GADLAERTYGVVGAGQ  126 (380)
T ss_dssp             CSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHH---------------------TCCGGGCEEEEECCSH
T ss_pred             ccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhh---------------------hcccCCCEEEEEeCCH
Confidence            9999999999999999999999999999999999999999863                     2579999999999999


Q ss_pred             HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcc----cc
Q 019387          176 IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT----TY  251 (342)
Q Consensus       176 IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~----t~  251 (342)
                      ||+++|++| ++|||+|++||+++...  .           .+     . ...++++++++||+|++|+|++++    |+
T Consensus       127 IG~~vA~~l-~~~G~~V~~~d~~~~~~--~-----------~g-----~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~  186 (380)
T 2o4c_A          127 VGGRLVEVL-RGLGWKVLVCDPPRQAR--E-----------PD-----G-EFVSLERLLAEADVISLHTPLNRDGEHPTR  186 (380)
T ss_dssp             HHHHHHHHH-HHTTCEEEEECHHHHHH--S-----------TT-----S-CCCCHHHHHHHCSEEEECCCCCSSSSSCCT
T ss_pred             HHHHHHHHH-HHCCCEEEEEcCChhhh--c-----------cC-----c-ccCCHHHHHHhCCEEEEeccCccccccchh
Confidence            999999997 79999999999765321  0           01     1 236899999999999999999999    99


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--------CCcccccccccccccccccc
Q 019387          252 HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--------LGFSSFKHISTQDRATSCPK  323 (342)
Q Consensus       252 ~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--------~~~~~tPhia~~~~~~~~~~  323 (342)
                      ++|+++.|++||+|++|||+|||+++|+++|+++|++|+|.+|+||||++||        +|+++|||+|++|.+..  .
T Consensus       187 ~li~~~~l~~mk~gailIN~sRG~vvd~~aL~~aL~~g~i~~A~LDV~~~EP~~~~~l~~~nvi~TPHiag~t~e~~--~  264 (380)
T 2o4c_A          187 HLLDEPRLAALRPGTWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEPQADPELAARCLIATPHIAGYSLEGK--L  264 (380)
T ss_dssp             TSBCHHHHHTSCTTEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTTTSCCHHHHTTCSEECSSCTTCCHHHH--H
T ss_pred             hhcCHHHHhhCCCCcEEEECCCCcccCHHHHHHHHHhCCCceEEeeeeccCCCCchhhccCCEEEccccCcCCHHHH--H
Confidence            9999999999999999999999999999999999999999999999999999        57899999999998854  5


Q ss_pred             ccCchhhcccccccc
Q 019387          324 LTREWPIYDNSCCIR  338 (342)
Q Consensus       324 ~~~~~~~~~~~~~~~  338 (342)
                      .+.++.++|...+++
T Consensus       265 ~~~~~~~~nl~~~l~  279 (380)
T 2o4c_A          265 RGTAQIYQAYCAWRG  279 (380)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHc
Confidence            666777777766654

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.97  E-value=1.7e-32  Score=271.56  Aligned_cols=194  Identities=14%  Similarity=0.164  Sum_probs=165.6

Q ss_pred             CceEE-EccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCC
Q 019387           87 GKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (342)
Q Consensus        87 ~k~i~-~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~g  165 (342)
                      ++.|+ ..++|+|++  +++.++||.++|++++|+ +|+|       ++.|++....+.+++| |.+     ..+.++.|
T Consensus       194 l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r-----~~~~~l~G  257 (479)
T 1v8b_A          194 IIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR-----ATDFLISG  257 (479)
T ss_dssp             CCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH-----HHCCCCTT
T ss_pred             eEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh-----ccccccCC
Confidence            48888 789999998  789999999999999999 9999       4468888888888887 642     34578999


Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      |+|||||+|.||+.+|+++ ++|||+|++||+++....+...         .     ++ ...++++++++||+|++|+ 
T Consensus       258 ktVgIIG~G~IG~~vA~~l-~~~G~~Viv~d~~~~~~~~a~~---------~-----g~-~~~~l~ell~~aDiVi~~~-  320 (479)
T 1v8b_A          258 KIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQAVM---------E-----GF-NVVTLDEIVDKGDFFITCT-  320 (479)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHHT---------T-----TC-EECCHHHHTTTCSEEEECC-
T ss_pred             CEEEEEeeCHHHHHHHHHH-HhCcCEEEEEeCChhhHHHHHH---------c-----CC-EecCHHHHHhcCCEEEECC-
Confidence            9999999999999999996 8999999999998764322211         0     11 2358999999999999994 


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH--HHHcCCceEEEEecCCCCC---------CCcccccccc
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE--HLKQNPMFRVGLDVFEVTE---------LGFSSFKHIS  313 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~--aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia  313 (342)
                         +|+++|+++.|+.||+|++|||+|||++ ||+++|.+  ||++|+|+ +++|||+.++         ||+++| |+|
T Consensus       321 ---~t~~lI~~~~l~~MK~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~plp~~~~l~~l~~~nvv~t-H~a  395 (479)
T 1v8b_A          321 ---GNVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITLPNGNKIIVLARGRLLNL-GCA  395 (479)
T ss_dssp             ---SSSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEECTTSCEEEEEGGGSBHHH-HSS
T ss_pred             ---ChhhhcCHHHHhhcCCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEECCCCCeeeEecCCCEEEE-ecc
Confidence               7899999999999999999999999999 99999999  99999998 9999997665         789999 998


Q ss_pred             -ccccc
Q 019387          314 -TQDRA  318 (342)
Q Consensus       314 -~~~~~  318 (342)
                       +++.+
T Consensus       396 tghp~e  401 (479)
T 1v8b_A          396 TGHPAF  401 (479)
T ss_dssp             CCSCHH
T ss_pred             CCCCch
Confidence             55533

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.97  E-value=3.5e-32  Score=270.13  Aligned_cols=192  Identities=16%  Similarity=0.214  Sum_probs=159.2

Q ss_pred             CceEE-EccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCC
Q 019387           87 GKAFS-NMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKG  165 (342)
Q Consensus        87 ~k~i~-~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~g  165 (342)
                      ++.|+ ..++|+|++  +++.++||.|+|++++|+ +|||+.       .|++....+.+++| |.+     ..+.++.|
T Consensus       214 l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~-----~~g~~L~G  277 (494)
T 3d64_A          214 IKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKR-----ATDVMIAG  277 (494)
T ss_dssp             CCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHH-----HHCCCCTT
T ss_pred             cEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhh-----ccccccCC
Confidence            47887 789999998  789999999999999999 999943       47766665555555 432     34678999


Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      |+|||+|+|.||+.+|+++ ++|||+|++||+++....+...         .     ++ ...++++++++||+|++|+ 
T Consensus       278 ktVgIIG~G~IG~~vA~~l-~~~G~~V~v~d~~~~~~~~a~~---------~-----G~-~~~~l~ell~~aDiVi~~~-  340 (494)
T 3d64_A          278 KIAVVAGYGDVGKGCAQSL-RGLGATVWVTEIDPICALQAAM---------E-----GY-RVVTMEYAADKADIFVTAT-  340 (494)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HTTTCEEEEECSCHHHHHHHHT---------T-----TC-EECCHHHHTTTCSEEEECS-
T ss_pred             CEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCChHhHHHHHH---------c-----CC-EeCCHHHHHhcCCEEEECC-
Confidence            9999999999999999996 8999999999998864322211         0     11 2358999999999999997 


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCceEEEEecCCCCC---------CCcccccccc-c
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHIS-T  314 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia-~  314 (342)
                         +|+++|+++.|++||+|++|||+|||++ ||+++| +||++|+|+ +++|||+.++         ||+++| |+| +
T Consensus       341 ---~t~~lI~~~~l~~MK~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv~plp~~~pL~~l~~~nvv~t-H~atg  414 (494)
T 3d64_A          341 ---GNYHVINHDHMKAMRHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDHIIFPDGKRVILLAEGRLVNL-GCATG  414 (494)
T ss_dssp             ---SSSCSBCHHHHHHCCTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEEEECTTSCEEEEEGGGSBHHH-HTSCC
T ss_pred             ---CcccccCHHHHhhCCCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEEEECCCCCchhhcCCCCEEEE-eCcCC
Confidence               6899999999999999999999999999 699999 999999998 8888886543         789999 999 5


Q ss_pred             ccc
Q 019387          315 QDR  317 (342)
Q Consensus       315 ~~~  317 (342)
                      ++.
T Consensus       415 ~~~  417 (494)
T 3d64_A          415 HPS  417 (494)
T ss_dssp             SCH
T ss_pred             CCH
Confidence            553

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.96  E-value=5.4e-29  Score=233.64  Aligned_cols=216  Identities=15%  Similarity=0.075  Sum_probs=166.1

Q ss_pred             CCceEEEEeCCCCc-hHHHHHHHhCCCeEEEecCCCCC------CCHHHHHHHhCCCceEEEec----------------
Q 019387           13 NGKYRVVSTKPMPG-TRWINLLIEQDCRVEICTQKKTI------LSVEDIIALIGDKCDGVIGQ----------------   69 (342)
Q Consensus        13 ~~~~~vl~~~~~~~-~~~~~~l~~~~~~v~~~~~~~~~------~~~~e~~~~~~~~~d~vi~~----------------   69 (342)
                      |..|+|++...... ..+.+.|.+.++++.+...++..      ...+++.+.+. ++|+++.+                
T Consensus         3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~~~~~~   81 (293)
T 3d4o_A            3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWN-TVDAILLPISGTNEAGKVDTIFSN   81 (293)
T ss_dssp             CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGG-GCSEEECCTTCCCTTCBCCBSSCS
T ss_pred             ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHh-cCCEEEeccccccCCceeeccccc
Confidence            34567777643222 34567888889999875432211      12245555555 48999985                


Q ss_pred             CCCCccHHHHHHhhccCCceEEEccccCCccCh-hHHHhCCeeEecCC------CCCchhHHHHHHHHHHHHHhchHHHH
Q 019387           70 LTEDWGETLFAALSRAGGKAFSNMAVGYNNVDV-NAANKYGIAVGNTP------GVLTETTAELAASLSLAAARRIVEAD  142 (342)
Q Consensus        70 ~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~-~~~~~~gI~V~n~~------~~~~~~vAE~~l~~~L~~~R~~~~~~  142 (342)
                      ...++++++++++|++  |+|+   +|+|++|+ ++++++||.|+|++      ++++.+|||++++++|..        
T Consensus        82 ~~~~~~~~~l~~~~~l--~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~--------  148 (293)
T 3d4o_A           82 ESIVLTEEMIEKTPNH--CVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH--------  148 (293)
T ss_dssp             CCCBCCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred             CCccchHHHHHhCCCC--CEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh--------
Confidence            2336789999999987  9987   89999998 89999999999998      789999999999998863        


Q ss_pred             HHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc
Q 019387          143 EFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV  222 (342)
Q Consensus       143 ~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (342)
                                      .+.++.|++|||||+|+||+.+|+++ ++||++|++||++++.....  ..+       +.   
T Consensus       149 ----------------~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~dr~~~~~~~~--~~~-------g~---  199 (293)
T 3d4o_A          149 ----------------TDFTIHGANVAVLGLGRVGMSVARKF-AALGAKVKVGARESDLLARI--AEM-------GM---  199 (293)
T ss_dssp             ----------------CSSCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHH--HHT-------TS---
T ss_pred             ----------------cCCCCCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEECCHHHHHHH--HHC-------CC---
Confidence                            13578999999999999999999997 79999999999987542111  111       11   


Q ss_pred             cccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       223 ~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      ......++++++++||+|++|+|.     ++++++.|+.||+|+++||++||+.
T Consensus       200 ~~~~~~~l~~~l~~aDvVi~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~  248 (293)
T 3d4o_A          200 EPFHISKAAQELRDVDVCINTIPA-----LVVTANVLAEMPSHTFVIDLASKPG  248 (293)
T ss_dssp             EEEEGGGHHHHTTTCSEEEECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred             eecChhhHHHHhcCCCEEEECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence            111125789999999999999995     7999999999999999999999865

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.93  E-value=1.3e-25  Score=211.33  Aligned_cols=222  Identities=14%  Similarity=0.091  Sum_probs=159.5

Q ss_pred             CCceEEEEeCCCCc-hHHHHHHHhCCCeEEEecCCCCCC------CHHHHHHHhCCCceEEEec---C-----------C
Q 019387           13 NGKYRVVSTKPMPG-TRWINLLIEQDCRVEICTQKKTIL------SVEDIIALIGDKCDGVIGQ---L-----------T   71 (342)
Q Consensus        13 ~~~~~vl~~~~~~~-~~~~~~l~~~~~~v~~~~~~~~~~------~~~e~~~~~~~~~d~vi~~---~-----------~   71 (342)
                      |+.|+|++...... ..+.+.|.+.++++.+...++...      ..+++.+.+. ++|+++.+   .           .
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~g~~~~~~~~~~~~-~~d~ii~~~~~~~~~~~i~s~~a~   83 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQLDHGFTGAVKCNIDEIPFQ-QIDSIILPVSATTGEGVVSTVFSN   83 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTTSSCCCTTEEECCGGGSCGG-GCSEEECCSSCEETTTEECBSSCS
T ss_pred             ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccccccccccceeccchHHHHh-cCCEEEeccccccCCccccccccc
Confidence            35678888754322 335678888899998764332221      1223444444 48999972   1           2


Q ss_pred             CC--ccHHHHHHhhccCCceEEEccccCCccC-hhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcC
Q 019387           72 ED--WGETLFAALSRAGGKAFSNMAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG  148 (342)
Q Consensus        72 ~~--~~~e~l~~l~~l~~k~i~~~~~G~d~id-~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g  148 (342)
                      .+  +++++++.+|++  |+|+   +|+|++| ++++.++||.|+|+|+.+  ++         ++.|+++.+     +|
T Consensus        84 ~~~~~~~~~l~~~~~l--~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g  142 (300)
T 2rir_A           84 EEVVLKQDHLDRTPAH--CVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EG  142 (300)
T ss_dssp             SCEECCHHHHHTSCTT--CEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HH
T ss_pred             CCccchHHHHhhcCCC--CEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HH
Confidence            45  789999999987  8887   8999999 999999999999999974  33         334555444     23


Q ss_pred             CCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccC
Q 019387          149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (342)
Q Consensus       149 ~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (342)
                      .|..  .....+.++.|++|||||+|.||+.+|+++ ++||++|++||++++.. +... .+       +.   ......
T Consensus       143 ~~~~--~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l-~~~G~~V~~~d~~~~~~-~~~~-~~-------g~---~~~~~~  207 (300)
T 2rir_A          143 TIML--AIQHTDYTIHGSQVAVLGLGRTGMTIARTF-AALGANVKVGARSSAHL-ARIT-EM-------GL---VPFHTD  207 (300)
T ss_dssp             HHHH--HHHTCSSCSTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHH-HT-------TC---EEEEGG
T ss_pred             HHHH--HHHhcCCCCCCCEEEEEcccHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHH-HC-------CC---eEEchh
Confidence            3321  001235789999999999999999999997 79999999999987532 1110 01       11   111135


Q ss_pred             CHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          229 SMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       229 ~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      ++++++++||+|++|+|.     ++++++.|+.||+|+++||++||+.
T Consensus       208 ~l~~~l~~aDvVi~~~p~-----~~i~~~~~~~mk~g~~lin~a~g~~  250 (300)
T 2rir_A          208 ELKEHVKDIDICINTIPS-----MILNQTVLSSMTPKTLILDLASRPG  250 (300)
T ss_dssp             GHHHHSTTCSEEEECCSS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred             hHHHHhhCCCEEEECCCh-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence            789999999999999996     7899999999999999999999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=99.87  E-value=5.9e-23  Score=204.48  Aligned_cols=192  Identities=17%  Similarity=0.156  Sum_probs=149.4

Q ss_pred             EEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEE
Q 019387           90 FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVG  169 (342)
Q Consensus        90 i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvg  169 (342)
                      +-..|+|+|++  .++.++||.++|+++.|. +|+|+.       +|+++...+....+    |..  ..+..+.|++|+
T Consensus       215 veetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~-------~r~l~~~~~s~~~g----~~r--~~~~~l~GktV~  278 (494)
T 3ce6_A          215 TEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSK-------FDNKYGTRHSLIDG----INR--GTDALIGGKKVL  278 (494)
T ss_dssp             EECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHT-------THHHHHHHHHHHHH----HHH--HHCCCCTTCEEE
T ss_pred             EEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHH-------HhhhhhhhhhhhHH----HHh--ccCCCCCcCEEE
Confidence            34789999998  678899999999999999 999953       45555444444333    211  123478999999


Q ss_pred             EEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcc
Q 019387          170 VIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKT  249 (342)
Q Consensus       170 IvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~  249 (342)
                      |+|+|.||+.+|+++ +++|++|+++|+++........         .+     +. ..+++++++++|+|+.|++    
T Consensus       279 IiG~G~IG~~~A~~l-ka~Ga~Viv~d~~~~~~~~A~~---------~G-----a~-~~~l~e~l~~aDvVi~atg----  338 (494)
T 3ce6_A          279 ICGYGDVGKGCAEAM-KGQGARVSVTEIDPINALQAMM---------EG-----FD-VVTVEEAIGDADIVVTATG----  338 (494)
T ss_dssp             EECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHH---------TT-----CE-ECCHHHHGGGCSEEEECSS----
T ss_pred             EEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHHHH---------cC-----CE-EecHHHHHhCCCEEEECCC----
Confidence            999999999999996 8999999999998764322211         11     11 2478899999999999974    


Q ss_pred             cccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH-HHHcCCceEEEEecCCCCC----------CCcc----cccccc
Q 019387          250 TYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE-HLKQNPMFRVGLDVFEVTE----------LGFS----SFKHIS  313 (342)
Q Consensus       250 t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~-aL~~g~i~~aaLDV~~~EP----------~~~~----~tPhia  313 (342)
                      +.++|+.+.|+.||+|++++|+||++. ||+++|.+ +|+++++. +++|+|+.++          +++.    .|||++
T Consensus       339 t~~~i~~~~l~~mk~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a  417 (494)
T 3ce6_A          339 NKDIIMLEHIKAMKDHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPS  417 (494)
T ss_dssp             SSCSBCHHHHHHSCTTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCH
T ss_pred             CHHHHHHHHHHhcCCCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCcc
Confidence            567899999999999999999999999 99999998 89888887 6689876533          4555    789998


Q ss_pred             ccccc
Q 019387          314 TQDRA  318 (342)
Q Consensus       314 ~~~~~  318 (342)
                      ..+..
T Consensus       418 ~~~~~  422 (494)
T 3ce6_A          418 FVMSN  422 (494)
T ss_dssp             HHHHH
T ss_pred             ccchH
Confidence            76543

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=99.85  E-value=3.1e-20  Score=180.04  Aligned_cols=249  Identities=16%  Similarity=0.136  Sum_probs=169.1

Q ss_pred             CCCchHHHHHHHhCCCeEEEecCC--CCCCCHHHHHH-----------HhCCCceEEEecCCCCccHHHHHHhhccCCce
Q 019387           23 PMPGTRWINLLIEQDCRVEICTQK--KTILSVEDIIA-----------LIGDKCDGVIGQLTEDWGETLFAALSRAGGKA   89 (342)
Q Consensus        23 ~~~~~~~~~~l~~~~~~v~~~~~~--~~~~~~~e~~~-----------~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~   89 (342)
                      ++.|+ ..+.|.+.|++|.+....  ....+.++..+           ... ++|+|+. ...+.++|+....+.  ..+
T Consensus        17 ~ltP~-~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~-~adii~~-vk~p~~~e~~~l~~~--~~l   91 (377)
T 2vhw_A           17 AITPA-GVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWA-DADLLLK-VKEPIAAEYGRLRHG--QIL   91 (377)
T ss_dssp             SCCHH-HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHH-HCSEEEC-SSCCCGGGGGGCCTT--CEE
T ss_pred             CcCHH-HHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhc-cCCEEEE-eCCCChHHHhhcCCC--CEE
Confidence            34444 478888889999764322  23456666652           222 3787754 344566665444443  256


Q ss_pred             EEEccccCCccChhHHHhCCeeEe----------cCCCCCchhHHHHHHHHHHHHH-hchHHHHHHHHcCCCCCCCCCcc
Q 019387           90 FSNMAVGYNNVDVNAANKYGIAVG----------NTPGVLTETTAELAASLSLAAA-RRIVEADEFMRAGLYDGWLPNLF  158 (342)
Q Consensus        90 i~~~~~G~d~id~~~~~~~gI~V~----------n~~~~~~~~vAE~~l~~~L~~~-R~~~~~~~~~~~g~w~~w~~~~~  158 (342)
                      +.....++|...++.+.++||+++          |.|.++  ++||++..+++.+. |++.    ..+.|+|..|..   
T Consensus        92 ~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s--~~ae~ag~~a~~~a~r~l~----~~~~g~~~~~~~---  162 (377)
T 2vhw_A           92 FTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLLA--PMSEVAGRLAAQVGAYHLM----RTQGGRGVLMGG---  162 (377)
T ss_dssp             EECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTH--HHHHHHHHHHHHHHHHHTS----GGGTSCCCCTTC---
T ss_pred             EEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCccccC--chHHHHHHHHHHHHHHHHH----HhcCCCcccccC---
Confidence            666677889989999999999997          555544  56699985554444 6663    233455432221   


Q ss_pred             cccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC-ccccccCCHHHHhhcC
Q 019387          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREA  237 (342)
Q Consensus       159 ~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ll~~a  237 (342)
                       ..++.|++|+|+|+|.||+.+|+.+ +++|++|+++|++++.. +...+.+       +... .......+++++++++
T Consensus       163 -~~~l~g~~V~ViG~G~iG~~~a~~a-~~~Ga~V~~~d~~~~~l-~~~~~~~-------g~~~~~~~~~~~~l~~~l~~a  232 (377)
T 2vhw_A          163 -VPGVEPADVVVIGAGTAGYNAARIA-NGMGATVTVLDINIDKL-RQLDAEF-------CGRIHTRYSSAYELEGAVKRA  232 (377)
T ss_dssp             -BTTBCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHT-------TTSSEEEECCHHHHHHHHHHC
T ss_pred             -CCCCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHHhc-------CCeeEeccCCHHHHHHHHcCC
Confidence             1368999999999999999999996 79999999999987542 2111111       1100 0001124678889999


Q ss_pred             CEEEEcC--CCCcccccccCHHHHhcCCCCcEEEEcC--CCcccCHHHHHHHHHcCCceEEEEecCCC-CC---------
Q 019387          238 DVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDEVALVEHLKQNPMFRVGLDVFEV-TE---------  303 (342)
Q Consensus       238 DiV~l~~--pl~~~t~~li~~~~l~~mk~ga~lINva--RG~~vd~~aL~~aL~~g~i~~aaLDV~~~-EP---------  303 (342)
                      |+|+.|+  |.+ +|.++++++.++.||+|+++||++  +|+                      ||+. ||         
T Consensus       233 DvVi~~~~~p~~-~t~~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~  289 (377)
T 2vhw_A          233 DLVIGAVLVPGA-KAPKLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFA  289 (377)
T ss_dssp             SEEEECCCCTTS-CCCCCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEE
T ss_pred             CEEEECCCcCCC-CCcceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEE
Confidence            9999976  554 789999999999999999999999  443                      6766 65         


Q ss_pred             -CCcc--ccccccccccc
Q 019387          304 -LGFS--SFKHISTQDRA  318 (342)
Q Consensus       304 -~~~~--~tPhia~~~~~  318 (342)
                       +++.  .+||+++.+..
T Consensus       290 ~~~v~i~~~phl~~~~~~  307 (377)
T 2vhw_A          290 VHDTLFYCVANMPASVPK  307 (377)
T ss_dssp             ETTEEEECBTTGGGGSHH
T ss_pred             ECCEEEEecCCcchhhHH
Confidence             5666  89999988743

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=99.78  E-value=1.6e-18  Score=169.06  Aligned_cols=145  Identities=20%  Similarity=0.293  Sum_probs=110.6

Q ss_pred             HHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHH
Q 019387          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARM  183 (342)
Q Consensus       104 ~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~  183 (342)
                      ...+.+|+|+|++.....+..+...+..-.+...+.      +.           .+.++.||+|||+|+|+||+.+|++
T Consensus       167 ~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~------ra-----------tg~~L~GktVgIiG~G~IG~~vA~~  229 (436)
T 3h9u_A          167 QRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGIK------RA-----------TDVMIAGKTACVCGYGDVGKGCAAA  229 (436)
T ss_dssp             HHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH------HH-----------HCCCCTTCEEEEECCSHHHHHHHHH
T ss_pred             HcCCCCCceEeechhhhhhhhhccccchHHHHHHHH------Hh-----------cCCcccCCEEEEEeeCHHHHHHHHH
Confidence            345688999999986665544444443333322221      11           2467999999999999999999999


Q ss_pred             HHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCC
Q 019387          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (342)
Q Consensus       184 l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk  263 (342)
                      | ++||++|+++|+++.........         +     + ...++++++++||+|++    ++.|+++|+++.|+.||
T Consensus       230 L-ka~Ga~Viv~D~~p~~a~~A~~~---------G-----~-~~~sL~eal~~ADVVil----t~gt~~iI~~e~l~~MK  289 (436)
T 3h9u_A          230 L-RGFGARVVVTEVDPINALQAAME---------G-----Y-QVLLVEDVVEEAHIFVT----TTGNDDIITSEHFPRMR  289 (436)
T ss_dssp             H-HHTTCEEEEECSCHHHHHHHHHT---------T-----C-EECCHHHHTTTCSEEEE----CSSCSCSBCTTTGGGCC
T ss_pred             H-HHCCCEEEEECCChhhhHHHHHh---------C-----C-eecCHHHHHhhCCEEEE----CCCCcCccCHHHHhhcC
Confidence            7 89999999999987543222111         1     1 23589999999999996    45789999999999999


Q ss_pred             CCcEEEEcCCCcc-cCHHHHHHH
Q 019387          264 KEAILVNCSRGPV-IDEVALVEH  285 (342)
Q Consensus       264 ~ga~lINvaRG~~-vd~~aL~~a  285 (342)
                      +|+++||+|||+. ||.++|.+.
T Consensus       290 ~gAIVINvgRg~vEID~~~L~~~  312 (436)
T 3h9u_A          290 DDAIVCNIGHFDTEIQVAWLKAN  312 (436)
T ss_dssp             TTEEEEECSSSGGGBCHHHHHHH
T ss_pred             CCcEEEEeCCCCCccCHHHHHhh
Confidence            9999999999997 999999874

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=99.75  E-value=6.5e-18  Score=164.90  Aligned_cols=240  Identities=14%  Similarity=0.121  Sum_probs=154.2

Q ss_pred             CCchHHHHHHHhCCCeEEEecCCC--CCCCHHHHHHH---------hCCCceEEEecCCCCccHHHHHHhhccCCceEEE
Q 019387           24 MPGTRWINLLIEQDCRVEICTQKK--TILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        24 ~~~~~~~~~l~~~~~~v~~~~~~~--~~~~~~e~~~~---------~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~   92 (342)
                      +.|+ ..+.|.+.|++|.+.....  ..++.++..+.         +.. +|+++... .+ .++.++.++. +.++|+.
T Consensus        25 ltP~-~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~~-adiil~vk-~p-~~~~i~~l~~-~~~li~~   99 (401)
T 1x13_A           25 ATPK-TVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQ-SEIILKVN-AP-LDDEIALLNP-GTTLVSF   99 (401)
T ss_dssp             CCHH-HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGS-SSEEECSS-CC-CHHHHTTCCT-TCEEEEC
T ss_pred             CCHH-HHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHhc-CCeEEEeC-CC-CHHHHHHhcC-CCcEEEE
Confidence            3443 4678888899997754322  24577777654         433 89887542 23 4666777632 3499999


Q ss_pred             ccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHH---HHHHhchHHHHHHHHcCCC--CCCCCCc--ccccccCC
Q 019387           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLS---LAAARRIVEADEFMRAGLY--DGWLPNL--FVGNLLKG  165 (342)
Q Consensus        93 ~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~---L~~~R~~~~~~~~~~~g~w--~~w~~~~--~~~~~L~g  165 (342)
                      .+.|+|++|++++.++||++.+     .++|+|++.++.   ++..+.+.. ...++.+.|  .+|....  ..| ++.|
T Consensus       100 ~~~~~d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag-~~av~~~~~~~~~~~~~~~~~~g-~l~g  172 (401)
T 1x13_A          100 IWPAQNPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAG-YRAIVEAAHEFGRFFTGQITAAG-KVPP  172 (401)
T ss_dssp             CCGGGCHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHH-HHHHHHHHHHCSSCSSCEEETTE-EECC
T ss_pred             ecCCCCHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHH-HHHHHHHHHhcccccCCceeecc-CcCC
Confidence            9999999999999999999964     444555444432   222222221 223332222  2222110  011 5789


Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccC-----CCCcccc----------ccCCH
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-----EQPVTWK----------RASSM  230 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~----------~~~~l  230 (342)
                      ++|+|+|.|.||..+++.+ +++|++|+++|+++......  ..++.....-.     ...-++.          ...++
T Consensus       173 ~~V~ViGaG~iG~~aa~~a-~~~Ga~V~v~D~~~~~~~~~--~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l  249 (401)
T 1x13_A          173 AKVMVIGAGVAGLAAIGAA-NSLGAIVRAFDTRPEVKEQV--QSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELF  249 (401)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCGGGHHHH--HHTTCEECCC--------CCHHHHHHSHHHHHHHHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHH--HHcCCEEEEecccccccccccchhhccHHHHHHHHHHH
Confidence            9999999999999999996 89999999999987542111  11110000000     0000000          00147


Q ss_pred             HHHhhcCCEEEEc--CCCCcccccccCHHHHhcCCCCcEEEEcC--CCcccCH
Q 019387          231 DEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDE  279 (342)
Q Consensus       231 ~~ll~~aDiV~l~--~pl~~~t~~li~~~~l~~mk~ga~lINva--RG~~vd~  279 (342)
                      ++++.++|+|+.|  +|. ..+.++++++.++.||+|+++||++  ||+.+++
T Consensus       250 ~e~~~~aDvVI~~~~~pg-~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~  301 (401)
T 1x13_A          250 AAQAKEVDIIVTTALIPG-KPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY  301 (401)
T ss_dssp             HHHHHHCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHhCCCCEEEECCccCC-CCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence            8888999999999  553 3477899999999999999999999  9998876

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=99.75  E-value=5.9e-18  Score=164.87  Aligned_cols=141  Identities=16%  Similarity=0.200  Sum_probs=104.5

Q ss_pred             hCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHh
Q 019387          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~  186 (342)
                      ...++++|+.+.    +..+-+-....+.+.+.....  |.           .+.++.||||||+|+|.||+.+|+++ +
T Consensus       206 ~L~~PvinVnds----~tK~~fDn~yG~~eslvdgI~--Ra-----------tg~~L~GKTVgVIG~G~IGr~vA~~l-r  267 (464)
T 3n58_A          206 LLPFPAINVNDS----VTKSKFDNKYGCKESLVDGIR--RG-----------TDVMMAGKVAVVCGYGDVGKGSAQSL-A  267 (464)
T ss_dssp             CCCSCEEECTTS----HHHHTTHHHHHHHHHHHHHHH--HH-----------HCCCCTTCEEEEECCSHHHHHHHHHH-H
T ss_pred             CCCCCEEeeccH----hhhhhhhhhhcchHHHHHHHH--Hh-----------cCCcccCCEEEEECcCHHHHHHHHHH-H
Confidence            345788888764    444444333333333322211  11           24679999999999999999999996 8


Q ss_pred             cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCc
Q 019387          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (342)
Q Consensus       187 afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga  266 (342)
                      +|||+|+++|+.+....+....              ++ ...++++++++||+|+++.    .|+++|+++.|++||+|+
T Consensus       268 afGa~Viv~d~dp~~a~~A~~~--------------G~-~vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~MK~GA  328 (464)
T 3n58_A          268 GAGARVKVTEVDPICALQAAMD--------------GF-EVVTLDDAASTADIVVTTT----GNKDVITIDHMRKMKDMC  328 (464)
T ss_dssp             HTTCEEEEECSSHHHHHHHHHT--------------TC-EECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHSCTTE
T ss_pred             HCCCEEEEEeCCcchhhHHHhc--------------Cc-eeccHHHHHhhCCEEEECC----CCccccCHHHHhcCCCCe
Confidence            9999999999877543222111              11 2358999999999999864    578999999999999999


Q ss_pred             EEEEcCCCcc-cCHHHHHH
Q 019387          267 ILVNCSRGPV-IDEVALVE  284 (342)
Q Consensus       267 ~lINvaRG~~-vd~~aL~~  284 (342)
                      +|||+|||+. ||.++|.+
T Consensus       329 ILINvGRgdvEID~~aL~~  347 (464)
T 3n58_A          329 IVGNIGHFDNEIQVAALRN  347 (464)
T ss_dssp             EEEECSSSTTTBTCGGGTT
T ss_pred             EEEEcCCCCcccCHHHHHh
Confidence            9999999998 99999874

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=99.71  E-value=8.4e-17  Score=156.18  Aligned_cols=245  Identities=14%  Similarity=0.162  Sum_probs=150.3

Q ss_pred             CCCchHHHHHHHhCCCeEEEecCCC--CCCCHHHHH-----------HHhCCCceEEEecCCCCc----cHHHHHHhhcc
Q 019387           23 PMPGTRWINLLIEQDCRVEICTQKK--TILSVEDII-----------ALIGDKCDGVIGQLTEDW----GETLFAALSRA   85 (342)
Q Consensus        23 ~~~~~~~~~~l~~~~~~v~~~~~~~--~~~~~~e~~-----------~~~~~~~d~vi~~~~~~~----~~e~l~~l~~l   85 (342)
                      ++.|+ ..+.|.+.|++|.+.....  ..++.++..           +.+. ++|+|+... .++    +++.++.++. 
T Consensus        17 ~l~P~-~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~-~adiil~v~-~p~~~~~~~~~i~~l~~-   92 (384)
T 1l7d_A           17 AISPE-VVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALS-QADVVWKVQ-RPMTAEEGTDEVALIKE-   92 (384)
T ss_dssp             SCCHH-HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHS-SCSEEEEEE-CCCCGGGSCCGGGGSCT-
T ss_pred             CCCHH-HHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhc-CCCEEEEec-CcccccCCHHHHHhhcc-
Confidence            34444 4678888899997744322  345666665           3344 489888653 344    5677777764 


Q ss_pred             CCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCC--CCCCCcccc-cc
Q 019387           86 GGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD--GWLPNLFVG-NL  162 (342)
Q Consensus        86 ~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~--~w~~~~~~~-~~  162 (342)
                      +.++++....+.|+.+++++.++||.+++.. ...+.+++..+. +|+..+++ ..+..+..+.|.  +|.+....+ .+
T Consensus        93 ~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e-~~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~~  169 (384)
T 1l7d_A           93 GAVLMCHLGALTNRPVVEALTKRKITAYAME-LMPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAGT  169 (384)
T ss_dssp             TCEEEEECCGGGCHHHHHHHHHTTCEEEEGG-GCCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTEE
T ss_pred             CCEEEEEecccCCHHHHHHHHHCCCEEEEec-cccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCCC
Confidence            3478888889999999999999999999731 111111111222 22222221 112222222221  121111111 36


Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh---ccC----CCCccccc---------
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK---ANG----EQPVTWKR---------  226 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~---------  226 (342)
                      +.|++|+|+|.|.||+.+++.+ +++|++|+++|+++......  ..++....   ...    ...-++..         
T Consensus       170 l~g~~V~ViGaG~iG~~aa~~a-~~~Ga~V~~~d~~~~~~~~~--~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~  246 (384)
T 1l7d_A          170 VPPARVLVFGVGVAGLQAIATA-KRLGAVVMATDVRAATKEQV--ESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK  246 (384)
T ss_dssp             ECCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCSTTHHHH--HHTTCEECCC-----------------------CC
T ss_pred             CCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH--HHcCCeEEeecccccccccccccchhhcCHHHHhh
Confidence            8999999999999999999995 89999999999987542111  11211000   000    00000000         


Q ss_pred             -cCCHHHHhhcCCEEEEcC--CCCcccccccCHHHHhcCCCCcEEEEcC--CCcccC
Q 019387          227 -ASSMDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVID  278 (342)
Q Consensus       227 -~~~l~~ll~~aDiV~l~~--pl~~~t~~li~~~~l~~mk~ga~lINva--RG~~vd  278 (342)
                       ...+++++.++|+|+.|+  |.+ .+.++++++.++.||+|+++||++  ||+.++
T Consensus       247 ~~~~l~~~~~~aDvVi~~~~~pg~-~~~~li~~~~l~~mk~g~vivdva~~~gg~~~  302 (384)
T 1l7d_A          247 QAEAVLKELVKTDIAITTALIPGK-PAPVLITEEMVTKMKPGSVIIDLAVEAGGNCP  302 (384)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCTTS-CCCCCSCHHHHTTSCTTCEEEETTGGGTCSST
T ss_pred             hHHHHHHHhCCCCEEEECCccCCC-CCCeeeCHHHHhcCCCCCEEEEEecCCCCCee
Confidence             012788899999999887  433 356889999999999999999999  887654

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=99.70  E-value=1.2e-18  Score=170.47  Aligned_cols=121  Identities=23%  Similarity=0.322  Sum_probs=97.2

Q ss_pred             ccc-cCCCeEEEEecCHHHHHHHHHHHhc-CCcEEEEEc-CCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc
Q 019387          160 GNL-LKGQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       160 ~~~-L~gktvgIvG~G~IG~~vA~~l~~a-fg~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~  236 (342)
                      |.+ |+||||||+|+|+||+.+|+++ ++ |||+|++++ ++...        +         .+    ...+++++++.
T Consensus       206 G~~~l~gktvgI~G~G~VG~~vA~~l-~~~~G~kVv~~sD~~g~~--------~---------~~----~gvdl~~L~~~  263 (419)
T 1gtm_A          206 GWDTLKGKTIAIQGYGNAGYYLAKIM-SEDFGMKVVAVSDSKGGI--------Y---------NP----DGLNADEVLKW  263 (419)
T ss_dssp             TCSCSTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEE--------E---------EE----EEECHHHHHHH
T ss_pred             CCcccCCCEEEEEcCCHHHHHHHHHH-HHhcCCEEEEEeCCCccc--------c---------Cc----cCCCHHHHHHH
Confidence            356 9999999999999999999997 79 999999994 43210        0         00    11256777765


Q ss_pred             CCE-EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC-----------C
Q 019387          237 ADV-ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE-----------L  304 (342)
Q Consensus       237 aDi-V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP-----------~  304 (342)
                      +|. .++ +|+ ++|++ |+.+.|..||+ .+|||++||++||+++ +++|+++.|.+++     +||           +
T Consensus       264 ~d~~~~l-~~l-~~t~~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~  333 (419)
T 1gtm_A          264 KNEHGSV-KDF-PGATN-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEK  333 (419)
T ss_dssp             HHHHSSS-TTC-TTSEE-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHT
T ss_pred             HHhcCEe-ecC-ccCee-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcC
Confidence            554 333 566 67888 89999999998 5999999999999999 6999999999988     777           7


Q ss_pred             Cccccccc
Q 019387          305 GFSSFKHI  312 (342)
Q Consensus       305 ~~~~tPhi  312 (342)
                      |+++|||+
T Consensus       334 ~V~itPhi  341 (419)
T 1gtm_A          334 GILQIPDF  341 (419)
T ss_dssp             TCEEECHH
T ss_pred             CEEEECch
Confidence            99999999

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=99.70  E-value=9.8e-17  Score=156.05  Aligned_cols=140  Identities=19%  Similarity=0.297  Sum_probs=104.1

Q ss_pred             hCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHh
Q 019387          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~  186 (342)
                      +..++|+|+++....+--+-.-+.--++...+.      +.           .+..+.||+|+|+|+|.||+.+|+++ +
T Consensus       179 ~L~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi~------ra-----------t~~~L~GktV~ViG~G~IGk~vA~~L-r  240 (435)
T 3gvp_A          179 KLCVPAMNVNDSVTKQKFDNLYCCRESILDGLK------RT-----------TDMMFGGKQVVVCGYGEVGKGCCAAL-K  240 (435)
T ss_dssp             CCCSCEEECTTCHHHHHHHTHHHHHHHHHHHHH------HH-----------HCCCCTTCEEEEECCSHHHHHHHHHH-H
T ss_pred             CCCCCEEEecchhhhhhhhhhhhhHHHHHHHHH------Hh-----------hCceecCCEEEEEeeCHHHHHHHHHH-H
Confidence            467999999886655544432222222221111      11           23579999999999999999999996 8


Q ss_pred             cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCc
Q 019387          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEA  266 (342)
Q Consensus       187 afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga  266 (342)
                      +||++|+++|+++.........         +     + ...++++++++||+|++|    +.|+++|+++.|+.||+|+
T Consensus       241 a~Ga~Viv~D~dp~ra~~A~~~---------G-----~-~v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~MK~ga  301 (435)
T 3gvp_A          241 AMGSIVYVTEIDPICALQACMD---------G-----F-RLVKLNEVIRQVDIVITC----TGNKNVVTREHLDRMKNSC  301 (435)
T ss_dssp             HTTCEEEEECSCHHHHHHHHHT---------T-----C-EECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHSCTTE
T ss_pred             HCCCEEEEEeCChhhhHHHHHc---------C-----C-EeccHHHHHhcCCEEEEC----CCCcccCCHHHHHhcCCCc
Confidence            9999999999987543222111         1     1 235899999999999996    4689999999999999999


Q ss_pred             EEEEcCCCcc-cCHHHHH
Q 019387          267 ILVNCSRGPV-IDEVALV  283 (342)
Q Consensus       267 ~lINvaRG~~-vd~~aL~  283 (342)
                      ++||+|||+. +|.++|.
T Consensus       302 ilINvgrg~~EId~~~L~  319 (435)
T 3gvp_A          302 IVCNMGHSNTEIDVASLR  319 (435)
T ss_dssp             EEEECSSTTTTBTGGGGC
T ss_pred             EEEEecCCCccCCHHHHH
Confidence            9999999998 7877774

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=99.69  E-value=7e-16  Score=148.92  Aligned_cols=227  Identities=15%  Similarity=0.166  Sum_probs=145.2

Q ss_pred             CCCchHHHHHHHhCCCeEEEecCC--CCCCCHHHHHHH---------hCCCceEEEecCCCCccHHHHHHhhccCCceEE
Q 019387           23 PMPGTRWINLLIEQDCRVEICTQK--KTILSVEDIIAL---------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAFS   91 (342)
Q Consensus        23 ~~~~~~~~~~l~~~~~~v~~~~~~--~~~~~~~e~~~~---------~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~   91 (342)
                      ++.|+ ..+.|.+.|++|.+....  ....+.++..+.         +. ++|+|+.. ..+..++ ++.++. +.++++
T Consensus        17 ~l~P~-~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il~v-k~p~~~~-~~~l~~-~~~~~~   91 (369)
T 2eez_A           17 ALTPG-GVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVVKV-KEPLPEE-YGFLRE-GLILFT   91 (369)
T ss_dssp             SSCHH-HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEECS-SCCCGGG-GGGCCT-TCEEEE
T ss_pred             CcCHH-HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEEEE-CCCCHHH-HhhcCC-CcEEEE
Confidence            34444 478888899999764432  135677777641         33 58988744 3344444 555532 348888


Q ss_pred             EccccCCccChhHHHhCCeeEe---cCCCC-Cc----hhHHHHHH--HHHHHHHhchHHHHHHHHcCCCCCCCCCccccc
Q 019387           92 NMAVGYNNVDVNAANKYGIAVG---NTPGV-LT----ETTAELAA--SLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN  161 (342)
Q Consensus        92 ~~~~G~d~id~~~~~~~gI~V~---n~~~~-~~----~~vAE~~l--~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~  161 (342)
                      ....+.|..+++.+.++||.+.   +.+.. ..    .++++.+-  +.++++. .+....    .|. ..|..   ...
T Consensus        92 ~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~~-~l~~~~----~g~-~~~~~---~~~  162 (369)
T 2eez_A           92 YLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGAQ-FLEKPK----GGR-GVLLG---GVP  162 (369)
T ss_dssp             CCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHHH-HTSGGG----TSC-CCCTT---CBT
T ss_pred             EecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHHH-HHHHhc----CCC-ceecC---CCC
Confidence            8888999999999999999997   44443 11    44454443  3333332 222111    121 01111   114


Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC-ccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ll~~aDiV  240 (342)
                      ++.+++|+|+|.|.||+.+|+.+ +++|++|+++|++++.. +.....+       +... .......++++++.++|+|
T Consensus       163 ~l~~~~V~ViGaG~iG~~~a~~l-~~~Ga~V~~~d~~~~~~-~~~~~~~-------g~~~~~~~~~~~~l~~~~~~~DvV  233 (369)
T 2eez_A          163 GVAPASVVILGGGTVGTNAAKIA-LGMGAQVTILDVNHKRL-QYLDDVF-------GGRVITLTATEANIKKSVQHADLL  233 (369)
T ss_dssp             BBCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHT-------TTSEEEEECCHHHHHHHHHHCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHhc-------CceEEEecCCHHHHHHHHhCCCEE
Confidence            68999999999999999999996 79999999999987542 2111111       1100 0011124678889999999


Q ss_pred             EEcCCCCc-ccccccCHHHHhcCCCCcEEEEcC
Q 019387          241 SLHPVLDK-TTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~~pl~~-~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      +.|++.+. .+..++.++.++.||+|+.+||++
T Consensus       234 i~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          234 IGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             EECCC-------CCSCHHHHTTSCTTCEEEECC
T ss_pred             EECCCCCccccchhHHHHHHHhhcCCCEEEEEe
Confidence            99998765 688999999999999999999998

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=99.37  E-value=7.6e-11  Score=113.44  Aligned_cols=250  Identities=12%  Similarity=0.099  Sum_probs=142.0

Q ss_pred             CCCCceEEEEeCC---------CCchHHHHHHHhCCCeEEEecCCC--CCCCHHHHHHHhC-----CCceEEEecCCCCc
Q 019387           11 NPNGKYRVVSTKP---------MPGTRWINLLIEQDCRVEICTQKK--TILSVEDIIALIG-----DKCDGVIGQLTEDW   74 (342)
Q Consensus        11 ~~~~~~~vl~~~~---------~~~~~~~~~l~~~~~~v~~~~~~~--~~~~~~e~~~~~~-----~~~d~vi~~~~~~~   74 (342)
                      .|-++|+|=+.+.         +.|+ ..+.|.+.|++|.+.....  ...+.++..+.-.     +.+|+|+.- .. .
T Consensus        18 ~~~~~m~IgvpkE~~~~E~RValtP~-~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~adiIlkV-k~-p   94 (381)
T 3p2y_A           18 GPGSMTLIGVPRESAEGERRVALVPK-VVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWPADVVVKV-NP-P   94 (381)
T ss_dssp             --CTTCEEEECCCCSTTCCCCSSCHH-HHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTTSSEEECS-SC-C
T ss_pred             CCCcceEEEEEecCCCCCceecCCHH-HHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeecCCEEEEe-CC-C
Confidence            3556677766432         2233 4788888999998765432  4567777765321     236766632 22 2


Q ss_pred             cHHHHHHhhccCCceEEEc-cccCCccChhHHHhCCeeEec---CCCCC-c------hhHHHHHHHHHHHHHhchHHHHH
Q 019387           75 GETLFAALSRAGGKAFSNM-AVGYNNVDVNAANKYGIAVGN---TPGVL-T------ETTAELAASLSLAAARRIVEADE  143 (342)
Q Consensus        75 ~~e~l~~l~~l~~k~i~~~-~~G~d~id~~~~~~~gI~V~n---~~~~~-~------~~vAE~~l~~~L~~~R~~~~~~~  143 (342)
                      .++.++.++. | +.+... -...|.=-++.+.++||...-   .|... +      .+++|.+=-+..      ..+.+
T Consensus        95 ~~~e~~~l~~-g-~~l~~~lh~~~~~~l~~~l~~~~it~ia~E~i~~~~~~~~l~~l~~~s~iAGy~Av------~~aa~  166 (381)
T 3p2y_A           95 TSDEISQLKP-G-SVLIGFLAPRTQPELASRLRIADVTAFAMESIPRISRAQTMDALSSQANVAGYKAV------LLGAS  166 (381)
T ss_dssp             CHHHHTTSCT-T-CEEEECCCTTTCHHHHHHHHHTTCEEEEGGGCCSSGGGGGGCHHHHHHHHHHHHHH------HHHHH
T ss_pred             ChhHHhhccC-C-CEEEEEeccccCHHHHHHHHHCCCeEEEeeccccccccccceeecchhHHHHHHHH------HHHHH
Confidence            3455566654 2 444332 222333335778899988754   33211 1      223333221111      11110


Q ss_pred             HHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc-----cC
Q 019387          144 FMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-----NG  218 (342)
Q Consensus       144 ~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~-----~~  218 (342)
                      .  -+...+  -....-..+.+++|+|+|+|.||..+|+.+ +++|++|++||+++... +... .++.....     .+
T Consensus       167 ~--l~~~~~--~l~~~~~~v~~~kV~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l-~~~~-~lGa~~~~l~~~~~~  239 (381)
T 3p2y_A          167 L--STRFVP--MLTTAAGTVKPASALVLGVGVAGLQALATA-KRLGAKTTGYDVRPEVA-EQVR-SVGAQWLDLGIDAAG  239 (381)
T ss_dssp             H--CSSCSS--CEECSSCEECCCEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSGGGH-HHHH-HTTCEECCCC-----
T ss_pred             H--hhhhhh--hhhcccCCcCCCEEEEECchHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHH-HcCCeEEeccccccc
Confidence            0  111000  000011357899999999999999999996 89999999999998642 1111 11100000     00


Q ss_pred             CCCc--------cccccCCHHHHhhcCCEEEEcC--CCCcccccccCHHHHhcCCCCcEEEEcC--CCcccCH
Q 019387          219 EQPV--------TWKRASSMDEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDE  279 (342)
Q Consensus       219 ~~~~--------~~~~~~~l~~ll~~aDiV~l~~--pl~~~t~~li~~~~l~~mk~ga~lINva--RG~~vd~  279 (342)
                      ....        ......++++++++||+|+.++  |. ..+..+|+++.++.||+|+++||++  +|+.++.
T Consensus       240 ~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~iPg-~~ap~Lvt~emv~~MkpGsVIVDvA~d~GG~~e~  311 (381)
T 3p2y_A          240 EGGYARELSEAERAQQQQALEDAITKFDIVITTALVPG-RPAPRLVTAAAATGMQPGSVVVDLAGETGGNCEL  311 (381)
T ss_dssp             --------CHHHHHHHHHHHHHHHTTCSEEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred             cccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCCCC-cccceeecHHHHhcCCCCcEEEEEeCCCCCcccc
Confidence            0000        0011246789999999999875  53 3467899999999999999999998  8877663

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=99.31  E-value=3.1e-12  Score=120.27  Aligned_cols=119  Identities=12%  Similarity=0.066  Sum_probs=91.6

Q ss_pred             cccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       159 ~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      .......++|||||+|.||..+|+.| ...|.+|.+||++++.. +.+.        ..     +.....++++++++||
T Consensus        15 ~~~~~~m~~I~iIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~-~~l~--------~~-----g~~~~~~~~~~~~~aD   79 (310)
T 3doj_A           15 VPRGSHMMEVGFLGLGIMGKAMSMNL-LKNGFKVTVWNRTLSKC-DELV--------EH-----GASVCESPAEVIKKCK   79 (310)
T ss_dssp             ---CCCSCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGG-HHHH--------HT-----TCEECSSHHHHHHHCS
T ss_pred             CcccccCCEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHH--------HC-----CCeEcCCHHHHHHhCC
Confidence            33455668999999999999999998 47799999999987643 2211        11     1234578999999999


Q ss_pred             EEEEcCCCCccccccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          239 VISLHPVLDKTTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       239 iV~l~~pl~~~t~~li--~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +|++|+|....++.++  .+..+..+++|.++||++.......+.+.+.+.+..+.
T Consensus        80 vvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  135 (310)
T 3doj_A           80 YTIAMLSDPCAALSVVFDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGGR  135 (310)
T ss_dssp             EEEECCSSHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EEEEEcCCHHHHHHHHhCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            9999999766777666  24566789999999999999988888999988775544

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=99.31  E-value=4.9e-13  Score=130.46  Aligned_cols=169  Identities=14%  Similarity=0.213  Sum_probs=120.5

Q ss_pred             ceEEEccccCCccChhHHH-----hCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCC-CCCCCcccc-
Q 019387           88 KAFSNMAVGYNNVDVNAAN-----KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD-GWLPNLFVG-  160 (342)
Q Consensus        88 k~i~~~~~G~d~id~~~~~-----~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~-~w~~~~~~~-  160 (342)
                      +.|...++|+|++++..+.     ++++.+++.+|. ..+++++.+..++.+.|++...... ..+.|. .|..-...+ 
T Consensus        83 ~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~-~~~~~s~a~~av~~a~~  160 (404)
T 1gpj_A           83 RHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRI-SEGAVSIGSAAVELAER  160 (404)
T ss_dssp             HHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSST-TCSCCSHHHHHHHHHHH
T ss_pred             hhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhh-cCCCccHHHHHHHHHHH
Confidence            6677889999999998887     888999999887 5689999999999999987644322 122221 000000001 


Q ss_pred             --cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387          161 --NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       161 --~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                        .++.|++|+|+|.|.||+.+++.+ +++|+ +|+++|++++.. +.+...+       +..   .....++++++.++
T Consensus       161 ~~~~l~g~~VlIiGaG~iG~~~a~~l-~~~G~~~V~v~~r~~~ra-~~la~~~-------g~~---~~~~~~l~~~l~~a  228 (404)
T 1gpj_A          161 ELGSLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYERA-VELARDL-------GGE---AVRFDELVDHLARS  228 (404)
T ss_dssp             HHSCCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHHH-HHHHHHH-------TCE---ECCGGGHHHHHHTC
T ss_pred             HhccccCCEEEEEChHHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HHHHHHc-------CCc---eecHHhHHHHhcCC
Confidence              147899999999999999999997 78999 999999987542 1111111       111   11124788889999


Q ss_pred             CEEEEcCCCCcccccccCHHHHhc--C----CCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLAT--M----KKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~--m----k~ga~lINvaR  273 (342)
                      |+|+.|+|   .+..+++++.++.  |    +++.++||++.
T Consensus       229 DvVi~at~---~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~  267 (404)
T 1gpj_A          229 DVVVSATA---APHPVIHVDDVREALRKRDRRSPILIIDIAN  267 (404)
T ss_dssp             SEEEECCS---SSSCCBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred             CEEEEccC---CCCceecHHHHHHHHHhccCCCCEEEEEccC
Confidence            99999986   4567788888887  4    35678888873

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=99.31  E-value=8.8e-12  Score=119.11  Aligned_cols=108  Identities=23%  Similarity=0.304  Sum_probs=86.6

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-cCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~aDiV  240 (342)
                      +|.||||+|+|+|+||+.+|+++ ++||++|+++|+++..  ..+...+       +     . ...+.++++. .||++
T Consensus       172 ~L~GktV~I~G~GnVG~~~A~~l-~~~GakVvvsD~~~~~--~~~a~~~-------g-----a-~~v~~~ell~~~~DIl  235 (355)
T 1c1d_A          172 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTER--VAHAVAL-------G-----H-TAVALEDVLSTPCDVF  235 (355)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH--HHHHHHT-------T-----C-EECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEeCCccH--HHHHHhc-------C-----C-EEeChHHhhcCcccee
Confidence            68999999999999999999996 7999999999987643  2211111       1     1 1236677887 89999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +-|     .+.+.|+++.++.|| ..+++|.+|+++.++++ .++|+++++.
T Consensus       236 iP~-----A~~~~I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl  280 (355)
T 1c1d_A          236 APC-----AMGGVITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL  280 (355)
T ss_dssp             EEC-----SCSCCBCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred             cHh-----HHHhhcCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence            853     578999999999998 78999999999999888 5889888643

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=99.28  E-value=1.9e-10  Score=111.47  Aligned_cols=233  Identities=16%  Similarity=0.185  Sum_probs=132.0

Q ss_pred             HHHHHHhCCCeEEEecCCC--CCCCHHHHHHHhC--------CCceEEEecCCCCccHHHHHHhhccCCceEEEccccCC
Q 019387           29 WINLLIEQDCRVEICTQKK--TILSVEDIIALIG--------DKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYN   98 (342)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~~--~~~~~~e~~~~~~--------~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d   98 (342)
                      -.+.|.+.|++|.+.....  ...+.++..+.-.        +++|+|+.-.. + .++.++.++. |-.++...-..-|
T Consensus        47 ~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~~~~adiIlkVk~-p-~~~e~~~l~~-g~~l~~~lh~~~~  123 (405)
T 4dio_A           47 SVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVILKVRR-P-SAQEISGYRS-GAVVIAIMDPYGN  123 (405)
T ss_dssp             HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEECGGGGGGCSEEEEEEC-C-CTTTGGGSCT-TCEEEEECCCTTC
T ss_pred             HHHHHHhCCCEEEEeCCCCccCCCCHHHHHHcCCEEchHHhhccCCEEEEeCC-C-ChhHHhhcCC-CcEEEEEeccccC
Confidence            4788888999998765432  3456666654211        13677664211 1 2233444543 2123333222223


Q ss_pred             ccChhHHHhCCeeEec---CCCCC-c------hhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCccc-ccccCCCe
Q 019387           99 NVDVNAANKYGIAVGN---TPGVL-T------ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFV-GNLLKGQT  167 (342)
Q Consensus        99 ~id~~~~~~~gI~V~n---~~~~~-~------~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~-~~~L~gkt  167 (342)
                      .=-++.+.++||...-   .|... +      .+++|.+=-+.      ...+.+.  -+   +..+.... -..+.+.+
T Consensus       124 ~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~A------v~~aa~~--l~---~~~~~l~t~~g~v~~~k  192 (405)
T 4dio_A          124 EEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQA------VIDAAYE--YD---RALPMMMTAAGTVPAAK  192 (405)
T ss_dssp             HHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHHH------HHHHHHH--CS---SCSSCEEETTEEECCCE
T ss_pred             HHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHHHH------HHHHHHH--hH---hhhchhhccCCCcCCCE
Confidence            3335778889988754   33211 1      12333322111      1111110  01   10011011 13578999


Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh-hh------ccCCCCcccc----------ccCCH
Q 019387          168 VGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF-LK------ANGEQPVTWK----------RASSM  230 (342)
Q Consensus       168 vgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~~----------~~~~l  230 (342)
                      |+|+|.|.||..+|+.+ +++|++|++||+++... +.. ..++.. ..      .++.....+.          ...++
T Consensus       193 V~ViG~G~iG~~aa~~a-~~lGa~V~v~D~~~~~l-~~~-~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l  269 (405)
T 4dio_A          193 IFVMGAGVAGLQAIATA-RRLGAVVSATDVRPAAK-EQV-ASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALV  269 (405)
T ss_dssp             EEEECCSHHHHHHHHHH-HHTTCEEEEECSSTTHH-HHH-HHTTCEECCCCC-----------------CHHHHHHHHHH
T ss_pred             EEEECCcHHHHHHHHHH-HHCCCEEEEEcCCHHHH-HHH-HHcCCceeecccccccccccccchhhhcchhhhhhhHhHH
Confidence            99999999999999996 89999999999998642 211 111110 00      0000000011          12378


Q ss_pred             HHHhhcCCEEEEcC--CCCcccccccCHHHHhcCCCCcEEEEcC--CCcccCH
Q 019387          231 DEVLREADVISLHP--VLDKTTYHLINKERLATMKKEAILVNCS--RGPVIDE  279 (342)
Q Consensus       231 ~~ll~~aDiV~l~~--pl~~~t~~li~~~~l~~mk~ga~lINva--RG~~vd~  279 (342)
                      ++++++||+|+.++  |. ..+..+++++.++.||+|+++||++  +|+.++.
T Consensus       270 ~e~l~~aDVVI~tvlipg-~~ap~Lvt~emv~~Mk~GsVIVDvA~d~GG~~e~  321 (405)
T 4dio_A          270 AEHIAKQDIVITTALIPG-RPAPRLVTREMLDSMKPGSVVVDLAVERGGNIEG  321 (405)
T ss_dssp             HHHHHTCSEEEECCCCSS-SCCCCCBCHHHHTTSCTTCEEEETTGGGTCSBTT
T ss_pred             HHHhcCCCEEEECCcCCC-CCCCEEecHHHHhcCCCCCEEEEEeCCCCCCccc
Confidence            89999999999875  53 2567899999999999999999998  8887755

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=99.27  E-value=2.4e-11  Score=114.36  Aligned_cols=131  Identities=14%  Similarity=0.049  Sum_probs=84.5

Q ss_pred             HHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc-hhHHHHHHhhhhhhhhccCC
Q 019387          142 DEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKFVTAYGQFLKANGE  219 (342)
Q Consensus       142 ~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~  219 (342)
                      ++..+.+.|.+|.+.... .....++|||||+|.||..+|+.|+ ..|. +|.+||+++ ....+...+        .  
T Consensus         2 ~~~~~~~~~~~~~~~~~~-~~~~~~~I~iIG~G~mG~~~A~~L~-~~G~~~V~~~dr~~~~~~~~~~~~--------~--   69 (312)
T 3qsg_A            2 HHHHHHSSGVDLGTENLY-FQSNAMKLGFIGFGEAASAIASGLR-QAGAIDMAAYDAASAESWRPRAEE--------L--   69 (312)
T ss_dssp             ------------------------CEEEEECCSHHHHHHHHHHH-HHSCCEEEEECSSCHHHHHHHHHH--------T--
T ss_pred             CcccccccccccCccccc-ccCCCCEEEEECccHHHHHHHHHHH-HCCCCeEEEEcCCCCHHHHHHHHH--------C--
Confidence            355677778776544322 2334579999999999999999984 6688 999999973 333222111        1  


Q ss_pred             CCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       220 ~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                         +.....++++++++||+|++|+|...... .+ .+....+++|.++||++........++.+.+.+.
T Consensus        70 ---g~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~  134 (312)
T 3qsg_A           70 ---GVSCKASVAEVAGECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRH  134 (312)
T ss_dssp             ---TCEECSCHHHHHHHCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHH
T ss_pred             ---CCEEeCCHHHHHhcCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhh
Confidence               12235689999999999999999765544 23 5667789999999999999988899999988765

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=99.26  E-value=7.2e-12  Score=117.61  Aligned_cols=117  Identities=14%  Similarity=0.124  Sum_probs=93.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+...++|||||+|.||+.+|+.| ...|.+|++||++++.. +.+.+        .     +.....++++++++||+|
T Consensus         5 ~~~~~~~IgiIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~-~~~~~--------~-----g~~~~~~~~e~~~~aDvV   69 (306)
T 3l6d_A            5 DESFEFDVSVIGLGAMGTIMAQVL-LKQGKRVAIWNRSPGKA-AALVA--------A-----GAHLCESVKAALSASPAT   69 (306)
T ss_dssp             CCCCSCSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSHHHH-HHHHH--------H-----TCEECSSHHHHHHHSSEE
T ss_pred             cccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHH--------C-----CCeecCCHHHHHhcCCEE
Confidence            345678999999999999999998 57899999999987543 22111        1     122357899999999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ++|+|.+..++.++..+.+..+++|.++||++++...+.+.+.+.+++..+.
T Consensus        70 i~~vp~~~~~~~v~~~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~  121 (306)
T 3l6d_A           70 IFVLLDNHATHEVLGMPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGH  121 (306)
T ss_dssp             EECCSSHHHHHHHHTSTTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCE
T ss_pred             EEEeCCHHHHHHHhcccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCe
Confidence            9999987677877764346667899999999999999999999999876554

>3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A*

Probab=99.25  E-value=7.6e-12  Score=117.35  Aligned_cols=115  Identities=19%  Similarity=0.237  Sum_probs=93.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      |+||+||+|+||..+|++|+ .-|.+|++||++++.. +.+.+             .+.....++.|+++.||+|++|+|
T Consensus         4 ~kIgfIGlG~MG~~mA~~L~-~~G~~v~v~dr~~~~~-~~l~~-------------~Ga~~a~s~~e~~~~~dvv~~~l~   68 (300)
T 3obb_A            4 KQIAFIGLGHMGAPMATNLL-KAGYLLNVFDLVQSAV-DGLVA-------------AGASAARSARDAVQGADVVISMLP   68 (300)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSSHHHH-HHHHH-------------TTCEECSSHHHHHTTCSEEEECCS
T ss_pred             CEEEEeeehHHHHHHHHHHH-hCCCeEEEEcCCHHHH-HHHHH-------------cCCEEcCCHHHHHhcCCceeecCC
Confidence            68999999999999999985 6699999999987643 22211             123346799999999999999999


Q ss_pred             CCcccccccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 019387          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (342)
Q Consensus       246 l~~~t~~li~~--~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLD  297 (342)
                      ..+..+.++..  ..++.+++|.++||++....-+...+.+.+++..+.  .+|
T Consensus        69 ~~~~v~~V~~~~~g~~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~~--~lD  120 (300)
T 3obb_A           69 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA--MLD  120 (300)
T ss_dssp             CHHHHHHHHHSSSSSTTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTCE--EEE
T ss_pred             chHHHHHHHhchhhhhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCE--EEe
Confidence            98888877643  478889999999999999999999999999887664  345

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=99.24  E-value=8.5e-12  Score=117.85  Aligned_cols=116  Identities=13%  Similarity=0.099  Sum_probs=92.6

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ...++|||||+|.||..+|+.| ...|.+|.+||++++.. +.+.        ..     +.....++++++++||+|++
T Consensus        29 ~~~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~l~--------~~-----g~~~~~~~~e~~~~aDvVi~   93 (320)
T 4dll_A           29 PYARKITFLGTGSMGLPMARRL-CEAGYALQVWNRTPARA-ASLA--------AL-----GATIHEQARAAARDADIVVS   93 (320)
T ss_dssp             CCCSEEEEECCTTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHHH--------TT-----TCEEESSHHHHHTTCSEEEE
T ss_pred             cCCCEEEEECccHHHHHHHHHH-HhCCCeEEEEcCCHHHH-HHHH--------HC-----CCEeeCCHHHHHhcCCEEEE
Confidence            4567999999999999999998 47799999999987642 2211        11     22345799999999999999


Q ss_pred             cCCCCcccccccCH-HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387          243 HPVLDKTTYHLINK-ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       243 ~~pl~~~t~~li~~-~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~  293 (342)
                      |+|.+...+.++.. ..+..+++|.++||++++...+.+.+.+.+++..+..
T Consensus        94 ~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~~  145 (320)
T 4dll_A           94 MLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIAH  145 (320)
T ss_dssp             CCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             ECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCEE
Confidence            99976677766653 5677899999999999999999999999998765543

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=99.23  E-value=1.2e-11  Score=115.71  Aligned_cols=120  Identities=13%  Similarity=0.179  Sum_probs=92.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++|||||+|.||..+|++|+ .-|.+|++||++++.. +.             ....+.....++.|++++||+|++|+|
T Consensus         6 ~kIgfIGLG~MG~~mA~~L~-~~G~~V~v~dr~~~~~-~~-------------l~~~G~~~~~s~~e~~~~~dvvi~~l~   70 (297)
T 4gbj_A            6 EKIAFLGLGNLGTPIAEILL-EAGYELVVWNRTASKA-EP-------------LTKLGATVVENAIDAITPGGIVFSVLA   70 (297)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEC--------CT-------------TTTTTCEECSSGGGGCCTTCEEEECCS
T ss_pred             CcEEEEecHHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HH-------------HHHcCCeEeCCHHHHHhcCCceeeecc
Confidence            58999999999999999985 6799999999987542 11             111233456799999999999999999


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~  300 (342)
                      ..+.....+....+..+++|.++||.+....-+...+.+.+++..+...--=|.-
T Consensus        71 ~~~~~~~v~~~~~~~~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsG  125 (297)
T 4gbj_A           71 DDAAVEELFSMELVEKLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFA  125 (297)
T ss_dssp             SHHHHHHHSCHHHHHHHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEEC
T ss_pred             chhhHHHHHHHHHHhhcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCC
Confidence            8888888888889999999999999999999999999999988766543333333

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=99.19  E-value=7.6e-11  Score=113.17  Aligned_cols=124  Identities=15%  Similarity=0.223  Sum_probs=98.0

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC---CE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA---DV  239 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a---Di  239 (342)
                      +.+++|||||+|.||+.+|+.| ...|.+|.+||++++.. +.+.        ..     +.....+++++++.+   |+
T Consensus        20 m~~mkIgiIGlG~mG~~~A~~L-~~~G~~V~v~dr~~~~~-~~l~--------~~-----g~~~~~s~~e~~~~a~~~Dv   84 (358)
T 4e21_A           20 FQSMQIGMIGLGRMGADMVRRL-RKGGHECVVYDLNVNAV-QALE--------RE-----GIAGARSIEEFCAKLVKPRV   84 (358)
T ss_dssp             --CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHH--------TT-----TCBCCSSHHHHHHHSCSSCE
T ss_pred             hcCCEEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHH--------HC-----CCEEeCCHHHHHhcCCCCCE
Confidence            4578999999999999999998 57899999999987542 2211        11     222357899999999   99


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      |++|+|.. .+..++ ...+..+++|.++||++.+...+...+.+.+++..+......|+-.++
T Consensus        85 Vi~~vp~~-~v~~vl-~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~  146 (358)
T 4e21_A           85 VWLMVPAA-VVDSML-QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIF  146 (358)
T ss_dssp             EEECSCGG-GHHHHH-HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGG
T ss_pred             EEEeCCHH-HHHHHH-HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHH
Confidence            99999976 777766 566788999999999999999999999999988777766666665544

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=99.19  E-value=1.3e-10  Score=114.86  Aligned_cols=153  Identities=18%  Similarity=0.252  Sum_probs=101.7

Q ss_pred             ccccCCccC-hhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEE
Q 019387           93 MAVGYNNVD-VNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVI  171 (342)
Q Consensus        93 ~~~G~d~id-~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIv  171 (342)
                      .++|+..+. ........|+|+|+++....+..+-..+.--++...+      .+           ..+..+.||+++|+
T Consensus       209 TttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yGt~~sl~dgi------~r-----------~tg~~L~GKtVvVt  271 (488)
T 3ond_A          209 TTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYGCRHSLPDGL------MR-----------ATDVMIAGKVAVVA  271 (488)
T ss_dssp             SHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHH------HH-----------HHCCCCTTCEEEEE
T ss_pred             ccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhccccHHHHHHH------HH-----------HcCCcccCCEEEEE
Confidence            345655432 1122245699999988655542222222111111111      01           12356899999999


Q ss_pred             ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccc
Q 019387          172 GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTY  251 (342)
Q Consensus       172 G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~  251 (342)
                      |+|.||+.+|++| +++|++|+++|+++....+....         +     + ...++++++..+|+|+.+.    .+.
T Consensus       272 GaGgIG~aiA~~L-aa~GA~Viv~D~~~~~a~~Aa~~---------g-----~-dv~~lee~~~~aDvVi~at----G~~  331 (488)
T 3ond_A          272 GYGDVGKGCAAAL-KQAGARVIVTEIDPICALQATME---------G-----L-QVLTLEDVVSEADIFVTTT----GNK  331 (488)
T ss_dssp             CCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHT---------T-----C-EECCGGGTTTTCSEEEECS----SCS
T ss_pred             CCCHHHHHHHHHH-HHCCCEEEEEcCCHHHHHHHHHh---------C-----C-ccCCHHHHHHhcCEEEeCC----CCh
Confidence            9999999999997 79999999999987543222111         1     1 2357888999999999764    467


Q ss_pred             cccCHHHHhcCCCCcEEEEcCCCcc-cCHHHH
Q 019387          252 HLINKERLATMKKEAILVNCSRGPV-IDEVAL  282 (342)
Q Consensus       252 ~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL  282 (342)
                      ++++.+.|+.||+|++++|+||+.. ++.+.+
T Consensus       332 ~vl~~e~l~~mk~gaiVvNaG~~~~Ei~~~~l  363 (488)
T 3ond_A          332 DIIMLDHMKKMKNNAIVCNIGHFDNEIDMLGL  363 (488)
T ss_dssp             CSBCHHHHTTSCTTEEEEESSSTTTTBTHHHH
T ss_pred             hhhhHHHHHhcCCCeEEEEcCCCCcccchHHH
Confidence            8999999999999999999999842 344433

>3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens}

Probab=99.16  E-value=4.1e-11  Score=111.18  Aligned_cols=112  Identities=16%  Similarity=0.073  Sum_probs=89.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++|||||+|.||..+|+.| ...|.+|++||++++.. +.+.+        .     +.....++++++++||+|++|+|
T Consensus         2 ~~i~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~~~~--------~-----g~~~~~~~~~~~~~aDvvi~~vp   66 (287)
T 3pef_A            2 QKFGFIGLGIMGSAMAKNL-VKAGCSVTIWNRSPEKA-EELAA--------L-----GAERAATPCEVVESCPVTFAMLA   66 (287)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSGGGG-HHHHH--------T-----TCEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEEeecHHHHHHHHHH-HHCCCeEEEEcCCHHHH-HHHHH--------C-----CCeecCCHHHHHhcCCEEEEEcC
Confidence            5899999999999999998 57799999999987643 22111        1     22345799999999999999999


Q ss_pred             CCcccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       246 l~~~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      .+.+.+.++.  +..+..+++|.++||++.....+.+.+.+.+++..+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pef_A           67 DPAAAEEVCFGKHGVLEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGGR  115 (287)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCCE
Confidence            7667776662  5566789999999999999988889999998876554

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=99.16  E-value=3.3e-11  Score=112.56  Aligned_cols=112  Identities=21%  Similarity=0.246  Sum_probs=89.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .++|||||+|.||..+|+.| ...|.+|.+||++++.. +.+.        ..     +.....+++++++ ||+|++|+
T Consensus        15 ~~~I~vIG~G~mG~~~A~~l-~~~G~~V~~~dr~~~~~-~~~~--------~~-----g~~~~~~~~~~~~-aDvvi~~v   78 (296)
T 3qha_A           15 QLKLGYIGLGNMGAPMATRM-TEWPGGVTVYDIRIEAM-TPLA--------EA-----GATLADSVADVAA-ADLIHITV   78 (296)
T ss_dssp             CCCEEEECCSTTHHHHHHHH-TTSTTCEEEECSSTTTS-HHHH--------HT-----TCEECSSHHHHTT-SSEEEECC
T ss_pred             CCeEEEECcCHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHH--------HC-----CCEEcCCHHHHHh-CCEEEEEC
Confidence            35899999999999999998 57799999999987642 1111        11     1234578999999 99999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~  293 (342)
                      |.+..++.++ +..+..+++|.++||+++....+.+.+.+.+.+..+..
T Consensus        79 p~~~~~~~v~-~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~~  126 (296)
T 3qha_A           79 LDDAQVREVV-GELAGHAKPGTVIAIHSTISDTTAVELARDLKARDIHI  126 (296)
T ss_dssp             SSHHHHHHHH-HHHHTTCCTTCEEEECSCCCHHHHHHHHHHHGGGTCEE
T ss_pred             CChHHHHHHH-HHHHHhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCCEE
Confidence            9766777777 67778899999999999999988899999998755543

>3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens}

Probab=99.12  E-value=4.2e-11  Score=111.07  Aligned_cols=112  Identities=16%  Similarity=0.091  Sum_probs=88.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++|||||+|.||..+|+.|+ ..|.+|++||++++.. +.+.+        .     +.....++++++++||+|++|+|
T Consensus         2 ~~I~iiG~G~mG~~~a~~l~-~~G~~V~~~dr~~~~~-~~~~~--------~-----g~~~~~~~~~~~~~advvi~~v~   66 (287)
T 3pdu_A            2 TTYGFLGLGIMGGPMAANLV-RAGFDVTVWNRNPAKC-APLVA--------L-----GARQASSPAEVCAACDITIAMLA   66 (287)
T ss_dssp             CCEEEECCSTTHHHHHHHHH-HHTCCEEEECSSGGGG-HHHHH--------H-----TCEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEccCHHHHHHHHHHH-HCCCeEEEEcCCHHHH-HHHHH--------C-----CCeecCCHHHHHHcCCEEEEEcC
Confidence            47999999999999999984 6699999999987643 21111        1     12245789999999999999999


Q ss_pred             CCcccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       246 l~~~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      .++.++.++.  +..+..+++|.++||++++...+.+.+.+.+.+..+.
T Consensus        67 ~~~~~~~v~~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~~  115 (287)
T 3pdu_A           67 DPAAAREVCFGANGVLEGIGGGRGYIDMSTVDDETSTAIGAAVTARGGR  115 (287)
T ss_dssp             SHHHHHHHHHSTTCGGGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             CHHHHHHHHcCchhhhhcccCCCEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            7667766662  4566789999999999999988888999988775444

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=99.12  E-value=3e-10  Score=104.18  Aligned_cols=198  Identities=17%  Similarity=0.124  Sum_probs=124.5

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhCC---CceEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhHHH
Q 019387           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGD---KCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAAN  106 (342)
Q Consensus        30 ~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~---~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~  106 (342)
                      -..+++.|.+..+...   ..+++++.+.+..   ...++.+  +.++.+++++.++.+  .-++....|+|.++.    
T Consensus        21 ~~~~~~~g~~~~y~~~---~~~~~~l~~~i~~l~~~~~G~~v--t~P~k~~i~~~~~~l--~~~a~~~gavn~i~~----   89 (263)
T 2d5c_A           21 AFALESLGLEGSYEAW---DTPLEALPGRLKEVRRAFRGVNL--TLPLKEAALAHLDWV--SPEAQRIGAVNTVLQ----   89 (263)
T ss_dssp             HHHHHHTTCCEEEEEE---ECCGGGHHHHHHHHHHHCSEEEE--CTTCTTGGGGGCSEE--CHHHHHHTCCCEEEE----
T ss_pred             HHHHHHcCCCCEEEEE---eCCHHHHHHHHHhccccCceEEE--cccCHHHHHHHHHHH--hHHHHHhCCCCcEEc----
Confidence            3456777777655432   2345566554432   1233333  345667777777665  555566678888864    


Q ss_pred             hCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHh
Q 019387          107 KYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVE  186 (342)
Q Consensus       107 ~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~  186 (342)
                      +.|-.    .++|+..     .+++.++.|          .            +.++.| +++|||.|.||+.+|+.| .
T Consensus        90 ~~g~~----~g~ntd~-----~g~~~~l~~----------~------------~~~l~~-~v~iiG~G~~g~~~a~~l-~  136 (263)
T 2d5c_A           90 VEGRL----FGFNTDA-----PGFLEALKA----------G------------GIPLKG-PALVLGAGGAGRAVAFAL-R  136 (263)
T ss_dssp             ETTEE----EEECCHH-----HHHHHHHHH----------T------------TCCCCS-CEEEECCSHHHHHHHHHH-H
T ss_pred             cCCeE----EEeCCCH-----HHHHHHHHH----------h------------CCCCCC-eEEEECCcHHHHHHHHHH-H
Confidence            23422    2444443     244444432          1            235789 999999999999999997 5


Q ss_pred             cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCc--ccccccCHHHHhcCCC
Q 019387          187 GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDK--TTYHLINKERLATMKK  264 (342)
Q Consensus       187 afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~--~t~~li~~~~l~~mk~  264 (342)
                      ..|++|.++|++++. .+.+.+.+       +.     . ..+++++ +++|+|++|+|...  ++...+.   ...+++
T Consensus       137 ~~g~~v~v~~r~~~~-~~~l~~~~-------~~-----~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~  198 (263)
T 2d5c_A          137 EAGLEVWVWNRTPQR-ALALAEEF-------GL-----R-AVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPE  198 (263)
T ss_dssp             HTTCCEEEECSSHHH-HHHHHHHH-------TC-----E-ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCS
T ss_pred             HCCCEEEEEECCHHH-HHHHHHHh-------cc-----c-hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCC
Confidence            789999999998753 22222221       11     0 2467778 99999999999763  3334554   467899


Q ss_pred             CcEEEEcCCCcccCHHHHHHHHHcCCc
Q 019387          265 EAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       265 ga~lINvaRG~~vd~~aL~~aL~~g~i  291 (342)
                      |++++|++.+.. +. .|.+++++..+
T Consensus       199 g~~viD~~~~p~-~t-~l~~~a~~~g~  223 (263)
T 2d5c_A          199 EGAAVDLVYRPL-WT-RFLREAKAKGL  223 (263)
T ss_dssp             SSEEEESCCSSS-SC-HHHHHHHHTTC
T ss_pred             CCEEEEeecCCc-cc-HHHHHHHHCcC
Confidence            999999998754 33 47777766443

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=99.10  E-value=5.9e-11  Score=111.05  Aligned_cols=113  Identities=19%  Similarity=0.148  Sum_probs=88.0

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc-cCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR-ASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~ll~~aDiV~l~  243 (342)
                      .++|||||+|.||..+|+.| ...|.+|.+||++++.. +...        ..+     ... ..++++++++||+|++|
T Consensus         7 ~~~I~iIG~G~mG~~~a~~l-~~~G~~V~~~dr~~~~~-~~~~--------~~g-----~~~~~~~~~e~~~~aDvvi~~   71 (303)
T 3g0o_A            7 DFHVGIVGLGSMGMGAARSC-LRAGLSTWGADLNPQAC-ANLL--------AEG-----ACGAAASAREFAGVVDALVIL   71 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHH--------HTT-----CSEEESSSTTTTTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHH--------HcC-----CccccCCHHHHHhcCCEEEEE
Confidence            46899999999999999998 46799999999987542 2211        111     112 46888899999999999


Q ss_pred             CCCCcccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          244 PVLDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       244 ~pl~~~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +|.+...+.++.  +..+..+++|.++||+++......+.+.+.+.+..+.
T Consensus        72 vp~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~~  122 (303)
T 3g0o_A           72 VVNAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISSADAQEIAAALTALNLN  122 (303)
T ss_dssp             CSSHHHHHHHHC--CCCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTCE
T ss_pred             CCCHHHHHHHHhChhhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCe
Confidence            997666666653  4556789999999999999988888899988875443

>4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A

Probab=99.09  E-value=2.1e-10  Score=114.09  Aligned_cols=128  Identities=16%  Similarity=0.203  Sum_probs=97.7

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh---cCCEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVIS  241 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~---~aDiV~  241 (342)
                      .++|||||+|.||..+|+.| ...|.+|.+||++++.. +.+.+        .+..........+++++++   ++|+|+
T Consensus         4 ~~kIgiIGlG~MG~~lA~~L-~~~G~~V~v~dr~~~~~-~~l~~--------~g~~g~~i~~~~s~~e~v~~l~~aDvVi   73 (484)
T 4gwg_A            4 QADIALIGLAVMGQNLILNM-NDHGFVVCAFNRTVSKV-DDFLA--------NEAKGTKVVGAQSLKEMVSKLKKPRRII   73 (484)
T ss_dssp             CBSEEEECCSHHHHHHHHHH-HHTTCCEEEECSSTHHH-HHHHH--------TTTTTSSCEECSSHHHHHHTBCSSCEEE
T ss_pred             CCEEEEEChhHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHh--------cccCCCceeccCCHHHHHhhccCCCEEE
Confidence            35899999999999999998 47799999999988643 22211        1111112223468899887   499999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      +++|..+.++.++ ++.+..|++|.++||++++...+...+.+.|++..+.....-|.-.++
T Consensus        74 l~Vp~~~~v~~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~  134 (484)
T 4gwg_A           74 LLVKAGQAVDDFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEE  134 (484)
T ss_dssp             ECSCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHH
T ss_pred             EecCChHHHHHHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHH
Confidence            9999877777777 567788999999999999999999999999988777655555655444

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=99.09  E-value=2.3e-10  Score=108.01  Aligned_cols=123  Identities=16%  Similarity=0.055  Sum_probs=89.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCch--hHHHHHHhhhhhhhhccCCCCccccccC-CHHHHhhcCCEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRAS-SMDEVLREADVI  240 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~ll~~aDiV  240 (342)
                      .++|||||+|.||..+|+.| ...| .+|++||++++  .+.+...+.+    ...+     .  .. ++++++++||+|
T Consensus        24 ~m~IgvIG~G~mG~~lA~~L-~~~G~~~V~~~dr~~~~~~~~~~~~~~~----~~~g-----~--~~~s~~e~~~~aDvV   91 (317)
T 4ezb_A           24 MTTIAFIGFGEAAQSIAGGL-GGRNAARLAAYDLRFNDPAASGALRARA----AELG-----V--EPLDDVAGIACADVV   91 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECGGGGCTTTHHHHHHHH----HHTT-----C--EEESSGGGGGGCSEE
T ss_pred             CCeEEEECccHHHHHHHHHH-HHcCCCeEEEEeCCCccccchHHHHHHH----HHCC-----C--CCCCHHHHHhcCCEE
Confidence            36899999999999999998 5789 99999999863  1111111110    1111     1  35 788899999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV  301 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~  301 (342)
                      ++|+|.......+  .+.+..+++|.++||++.......+.+.+.+++..+....--|+-.
T Consensus        92 i~avp~~~~~~~~--~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~  150 (317)
T 4ezb_A           92 LSLVVGAATKAVA--ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMAR  150 (317)
T ss_dssp             EECCCGGGHHHHH--HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSC
T ss_pred             EEecCCHHHHHHH--HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCC
Confidence            9999976555443  6677889999999999999988899999999875554322234543

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=99.07  E-value=1.5e-10  Score=105.20  Aligned_cols=108  Identities=10%  Similarity=0.147  Sum_probs=65.5

Q ss_pred             CCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhH-------------HHHHHhhhhhhhh
Q 019387          149 LYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-------------LEKFVTAYGQFLK  215 (342)
Q Consensus       149 ~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~-------------~~~~~~~~~~~~~  215 (342)
                      .|..|.+......++.+++|||||+|+||..+|+.| ...|.+|++||++++..             .+.+..       
T Consensus         3 ~~~~~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L-~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-------   74 (245)
T 3dtt_A            3 SDKIHHHHHHENLYFQGMKIAVLGTGTVGRTMAGAL-ADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLP-------   74 (245)
T ss_dssp             ----------------CCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHTCC-------CCHHHHGG-------
T ss_pred             cccccccccccccccCCCeEEEECCCHHHHHHHHHH-HHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHh-------
Confidence            455555444566789999999999999999999998 47799999999987641             111110       


Q ss_pred             ccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHH-HhcCCCCcEEEEcC
Q 019387          216 ANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCS  272 (342)
Q Consensus       216 ~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~-l~~mk~ga~lINva  272 (342)
                      ..+     .....++++++++||+|++|+|..... ..+. +. ...+ +|.++|+++
T Consensus        75 ~~~-----~~~~~~~~e~~~~aDvVilavp~~~~~-~~~~-~i~~~~l-~g~ivi~~s  124 (245)
T 3dtt_A           75 EHP-----HVHLAAFADVAAGAELVVNATEGASSI-AALT-AAGAENL-AGKILVDIA  124 (245)
T ss_dssp             GST-----TCEEEEHHHHHHHCSEEEECSCGGGHH-HHHH-HHCHHHH-TTSEEEECC
T ss_pred             hcC-----ceeccCHHHHHhcCCEEEEccCcHHHH-HHHH-Hhhhhhc-CCCEEEECC
Confidence            001     113468899999999999999965433 2222 11 2223 799999999

>2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A

Probab=99.00  E-value=6.8e-10  Score=102.62  Aligned_cols=216  Identities=15%  Similarity=0.139  Sum_probs=124.2

Q ss_pred             eCCCCceEEEEeCCCCc----hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCC----CceEEEecCCCCccHHHHHH
Q 019387           10 WNPNGKYRVVSTKPMPG----TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGD----KCDGVIGQLTEDWGETLFAA   81 (342)
Q Consensus        10 ~~~~~~~~vl~~~~~~~----~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~----~~d~vi~~~~~~~~~e~l~~   81 (342)
                      .++.++.--|+=+|+..    ...-..+++.|.+..+....   .+++++.+.+..    +.+++.+.  .+..++.+..
T Consensus         8 ~~~~t~~~~liG~pi~hs~sp~~h~~~~~~~g~~~~y~~~~---~~~~~l~~~i~~l~~~~~~G~nvt--iP~k~~i~~~   82 (275)
T 2hk9_A            8 INAQTQLYGVIGFPVKHSLSPVFQNALIRYAGLNAVYLAFE---INPEELKKAFEGFKALKVKGINVT--VPFKEEIIPL   82 (275)
T ss_dssp             CCTTCEEEEEEESSCTTCSHHHHHHHHHHHHTCSEEEEEEE---CCGGGHHHHHHHHHHHTCCEEEEC--TTSTTTTGGG
T ss_pred             ccCCceEEEEECCCcccccCHHHHHHHHHHcCCCcEEEEEE---CCHHHHHHHHHHHHhCCCCEEEEC--ccCHHHHHHH
Confidence            45555443344344332    22224556667666543322   345565554421    35666654  3455666655


Q ss_pred             hhccCCceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCccccc
Q 019387           82 LSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGN  161 (342)
Q Consensus        82 l~~l~~k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~  161 (342)
                      +..+  .-.+....++|.++.    +.|-.    .|+|+...     +.+.++.+          .            +.
T Consensus        83 ld~l--~~~A~~~gavnti~~----~~g~~----~g~nTd~~-----G~~~~l~~----------~------------~~  125 (275)
T 2hk9_A           83 LDYV--EDTAKEIGAVNTVKF----ENGKA----YGYNTDWI-----GFLKSLKS----------L------------IP  125 (275)
T ss_dssp             CSEE--CHHHHHHTCCCEEEE----ETTEE----EEECCHHH-----HHHHHHHH----------H------------CT
T ss_pred             HHHh--hHHHHHhCCcceEEe----eCCEE----EeecCCHH-----HHHHHHHH----------h------------CC
Confidence            5543  333344455666543    23422    23444332     44444332          1            23


Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      ++.|++++|||.|.+|+++|+.| ...|++|.++|++++.. +.+.+.+            +.....+++++++++|+|+
T Consensus       126 ~~~~~~v~iiGaG~~g~aia~~L-~~~g~~V~v~~r~~~~~-~~l~~~~------------g~~~~~~~~~~~~~aDiVi  191 (275)
T 2hk9_A          126 EVKEKSILVLGAGGASRAVIYAL-VKEGAKVFLWNRTKEKA-IKLAQKF------------PLEVVNSPEEVIDKVQVIV  191 (275)
T ss_dssp             TGGGSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSHHHH-HHHTTTS------------CEEECSCGGGTGGGCSEEE
T ss_pred             CcCCCEEEEECchHHHHHHHHHH-HHcCCEEEEEECCHHHH-HHHHHHc------------CCeeehhHHhhhcCCCEEE
Confidence            57789999999999999999997 56788999999987532 2211110            1122337788889999999


Q ss_pred             EcCCCCcc--cccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          242 LHPVLDKT--TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~~pl~~~--t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      +|+|....  +...++   +..+++|.++++++.   .... +.++.++
T Consensus       192 ~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~---~~t~-ll~~a~~  233 (275)
T 2hk9_A          192 NTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY---KETK-LLKKAKE  233 (275)
T ss_dssp             ECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS---SCCH-HHHHHHH
T ss_pred             EeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC---ChHH-HHHHHHH
Confidence            99997642  223454   456899999999988   3333 4444444

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=99.00  E-value=1.9e-09  Score=99.92  Aligned_cols=142  Identities=13%  Similarity=0.070  Sum_probs=96.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh----hhhhhcc-CCCC-------ccccccCCHHHH
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY----GQFLKAN-GEQP-------VTWKRASSMDEV  233 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~----~~~~~~~-~~~~-------~~~~~~~~l~~l  233 (342)
                      ++|+|||.|.||..+|+.+ ...|.+|++||++++.. +...+..    ..+.... +...       .......+++++
T Consensus         5 ~kV~VIGaG~mG~~iA~~l-a~~G~~V~l~d~~~~~~-~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~   82 (283)
T 4e12_A            5 TNVTVLGTGVLGSQIAFQT-AFHGFAVTAYDINTDAL-DAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQA   82 (283)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHH
T ss_pred             CEEEEECCCHHHHHHHHHH-HhCCCeEEEEeCCHHHH-HHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHH
Confidence            6899999999999999998 47799999999987642 2211110    0000000 0000       011234688899


Q ss_pred             hhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       234 l~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      +++||+|+.++|.+.+.+..+-++....+++++++++.+.+  +..+++.+++.. .-..+++..|.+-+  +.+.++||
T Consensus        83 ~~~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~--~~~~~la~~~~~-~~~~ig~h~~~p~~~~~lvevv~~  159 (283)
T 4e12_A           83 VKDADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSST--LLPSDLVGYTGR-GDKFLALHFANHVWVNNTAEVMGT  159 (283)
T ss_dssp             TTTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHHHHSC-GGGEEEEEECSSTTTSCEEEEEEC
T ss_pred             hccCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHhhcCC-CcceEEEccCCCcccCceEEEEeC
Confidence            99999999999987777777777788889999999965444  456788888754 34567777775433  55666776


Q ss_pred             c
Q 019387          312 I  312 (342)
Q Consensus       312 i  312 (342)
                      -
T Consensus       160 ~  160 (283)
T 4e12_A          160 T  160 (283)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=98.95  E-value=6.9e-10  Score=103.05  Aligned_cols=111  Identities=18%  Similarity=0.214  Sum_probs=85.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      .+|+|||+|.||+.+|+.| ...|.+|.+||++++.. +.+.        ..+     .....+++++++++|+|++|+|
T Consensus         6 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~~~--------~~g-----~~~~~~~~~~~~~~D~vi~~v~   70 (299)
T 1vpd_A            6 MKVGFIGLGIMGKPMSKNL-LKAGYSLVVSDRNPEAI-ADVI--------AAG-----AETASTAKAIAEQCDVIITMLP   70 (299)
T ss_dssp             CEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHH-HHHH--------HTT-----CEECSSHHHHHHHCSEEEECCS
T ss_pred             ceEEEECchHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHH--------HCC-----CeecCCHHHHHhCCCEEEEECC
Confidence            4899999999999999998 46799999999987542 2211        111     2234688899999999999999


Q ss_pred             CCcccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 019387          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       246 l~~~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i  291 (342)
                      .+.+.+.++.  ++....+++|.++||++.|...+.+.|.+.+.+..+
T Consensus        71 ~~~~~~~~~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~g~  118 (299)
T 1vpd_A           71 NSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGV  118 (299)
T ss_dssp             SHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred             CHHHHHHHHhCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            7666666663  345577899999999999987778889998876433

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=98.95  E-value=1.4e-09  Score=101.03  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=85.0

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++|||||+|.||+.+|+.| ...|.+|.+||++++.. +.+.        ..     +.....++++++.++|+|++|+|
T Consensus         5 ~~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~~~--------~~-----g~~~~~~~~~~~~~~D~vi~~vp   69 (301)
T 3cky_A            5 IKIGFIGLGAMGKPMAINL-LKEGVTVYAFDLMEANV-AAVV--------AQ-----GAQACENNQKVAAASDIIFTSLP   69 (301)
T ss_dssp             CEEEEECCCTTHHHHHHHH-HHTTCEEEEECSSHHHH-HHHH--------TT-----TCEECSSHHHHHHHCSEEEECCS
T ss_pred             CEEEEECccHHHHHHHHHH-HHCCCeEEEEeCCHHHH-HHHH--------HC-----CCeecCCHHHHHhCCCEEEEECC
Confidence            5899999999999999998 46799999999987542 2211        11     12234688999999999999999


Q ss_pred             CCcccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       246 l~~~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      .+.+++.++.  ++....+++|.++|+++.|...+.+.|.+.+.+.
T Consensus        70 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~  115 (301)
T 3cky_A           70 NAGIVETVMNGPGGVLSACKAGTVIVDMSSVSPSSTLKMAKVAAEK  115 (301)
T ss_dssp             SHHHHHHHHHSTTCHHHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHcCcchHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            7666777774  3556778999999999998866778888888764

>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6

Probab=98.94  E-value=2.4e-09  Score=98.59  Aligned_cols=109  Identities=17%  Similarity=0.204  Sum_probs=79.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-cCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~aDiV~l  242 (342)
                      ++|||||+|+||..+|+.| ...|.  +|++||++++.. +...        ..+...   ....+++++++ +||+|++
T Consensus         2 ~~I~iIG~G~mG~~~a~~l-~~~g~~~~V~~~d~~~~~~-~~~~--------~~g~~~---~~~~~~~~~~~~~aDvVil   68 (281)
T 2g5c_A            2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESI-SKAV--------DLGIID---EGTTSIAKVEDFSPDFVML   68 (281)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHH-HHHH--------HTTSCS---EEESCGGGGGGTCCSEEEE
T ss_pred             cEEEEEecCHHHHHHHHHH-HhcCCCcEEEEEeCCHHHH-HHHH--------HCCCcc---cccCCHHHHhcCCCCEEEE
Confidence            5899999999999999997 56777  999999987543 2111        112111   11346778888 9999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      |+|.. .+..++. +....+++++++++++++.....+.+.+.+.++
T Consensus        69 avp~~-~~~~v~~-~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~  113 (281)
T 2g5c_A           69 SSPVR-TFREIAK-KLSYILSEDATVTDQGSVKGKLVYDLENILGKR  113 (281)
T ss_dssp             CSCHH-HHHHHHH-HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGG
T ss_pred             cCCHH-HHHHHHH-HHHhhCCCCcEEEECCCCcHHHHHHHHHhcccc
Confidence            99953 4555554 355678999999999988866667788888754

>2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A*

Probab=98.92  E-value=3e-09  Score=105.85  Aligned_cols=119  Identities=13%  Similarity=0.119  Sum_probs=90.3

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc---CCE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADV  239 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aDi  239 (342)
                      ...++|||||+|.||+.+|+.|+ ..|.+|.+||++++.. +.+.+..       .  ..+.....+++++++.   +|+
T Consensus        13 ~~~~~IgvIGlG~MG~~lA~~La-~~G~~V~v~~r~~~~~-~~l~~~~-------~--~~gi~~~~s~~e~v~~l~~aDv   81 (480)
T 2zyd_A           13 MSKQQIGVVGMAVMGRNLALNIE-SRGYTVSIFNRSREKT-EEVIAEN-------P--GKKLVPYYTVKEFVESLETPRR   81 (480)
T ss_dssp             --CBSEEEECCSHHHHHHHHHHH-TTTCCEEEECSSHHHH-HHHHHHS-------T--TSCEEECSSHHHHHHTBCSSCE
T ss_pred             cCCCeEEEEccHHHHHHHHHHHH-hCCCeEEEEeCCHHHH-HHHHhhC-------C--CCCeEEeCCHHHHHhCCCCCCE
Confidence            45678999999999999999984 6799999999987543 2222111       0  0123345689998887   999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~  293 (342)
                      |++++|.+..++.++ ++....+++|.++||++.|...+...+.+.|.+..+..
T Consensus        82 Vil~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~  134 (480)
T 2zyd_A           82 ILLMVKAGAGTDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNF  134 (480)
T ss_dssp             EEECSCSSSHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEE
T ss_pred             EEEECCCHHHHHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCCCe
Confidence            999999877788888 45667889999999999998888888988887754443

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=98.92  E-value=6.6e-09  Score=99.71  Aligned_cols=108  Identities=17%  Similarity=0.234  Sum_probs=81.5

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-cCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~aDiV  240 (342)
                      +|.||+|+|+|+|+||+.+|+.| ..+|++|+++|+.+.. .+.+.+.+       +     . ...+.++++. +||++
T Consensus       170 ~L~GktV~V~G~G~VG~~~A~~L-~~~GakVvv~D~~~~~-l~~~a~~~-------g-----a-~~v~~~~ll~~~~DIv  234 (364)
T 1leh_A          170 SLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAA-VSAAVAEE-------G-----A-DAVAPNAIYGVTCDIF  234 (364)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH-HHHHHHHH-------C-----C-EECCGGGTTTCCCSEE
T ss_pred             CCCcCEEEEECchHHHHHHHHHH-HHCCCEEEEEcCCHHH-HHHHHHHc-------C-----C-EEEChHHHhccCCcEe
Confidence            68999999999999999999997 7999999999987643 23222222       1     1 1124556665 89999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i  291 (342)
                      +.|.     +.++|+.+.++.|+ ..++++.+++++.+++ ..+.|+++.+
T Consensus       235 ip~a-----~~~~I~~~~~~~lg-~~iV~e~An~p~t~~e-a~~~L~~~Gi  278 (364)
T 1leh_A          235 APCA-----LGAVLNDFTIPQLK-AKVIAGSADNQLKDPR-HGKYLHELGI  278 (364)
T ss_dssp             EECS-----CSCCBSTTHHHHCC-CSEECCSCSCCBSSHH-HHHHHHHHTC
T ss_pred             eccc-----hHHHhCHHHHHhCC-CcEEEeCCCCCcccHH-HHHHHHhCCC
Confidence            9874     56799988889895 5689999999998866 5566766543

>2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A*

Probab=98.90  E-value=1.7e-09  Score=100.21  Aligned_cols=107  Identities=22%  Similarity=0.278  Sum_probs=80.8

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|||||+|.||+.+|+.| ...|.+|.+||++++.. +.+.        ..     +.....+++++++++|+|++|+|.
T Consensus         2 ~i~iiG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~-~~~~--------~~-----g~~~~~~~~~~~~~~Dvvi~~vp~   66 (296)
T 2gf2_A            2 PVGFIGLGNMGNPMAKNL-MKHGYPLIIYDVFPDAC-KEFQ--------DA-----GEQVVSSPADVAEKADRIITMLPT   66 (296)
T ss_dssp             CEEEECCSTTHHHHHHHH-HHTTCCEEEECSSTHHH-HHHH--------TT-----TCEECSSHHHHHHHCSEEEECCSS
T ss_pred             eEEEEeccHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHH--------Hc-----CCeecCCHHHHHhcCCEEEEeCCC
Confidence            699999999999999998 46799999999987542 2211        11     122346889999999999999997


Q ss_pred             CcccccccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          247 DKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       247 ~~~t~~li~~--~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      +.+++.++..  ..+..+++|.++|+++....-+.+.+.+.+.+
T Consensus        67 ~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~  110 (296)
T 2gf2_A           67 SINAIEAYSGANGILKKVKKGSLLIDSSTIDPAVSKELAKEVEK  110 (296)
T ss_dssp             HHHHHHHHHSTTSGGGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCchhHHhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence            6677766643  24567899999999887776666677777765

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=98.90  E-value=4.4e-09  Score=99.08  Aligned_cols=111  Identities=17%  Similarity=0.173  Sum_probs=79.6

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH-HhhcCCE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADV  239 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~aDi  239 (342)
                      +..++|||||+|.||+.+|+.| +..|.  +|++||++++..... .        ..+...   ....++++ ++++||+
T Consensus        31 ~~~~kI~IIG~G~mG~slA~~l-~~~G~~~~V~~~dr~~~~~~~a-~--------~~G~~~---~~~~~~~~~~~~~aDv   97 (314)
T 3ggo_A           31 LSMQNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISKA-V--------DLGIID---EGTTSIAKVEDFSPDF   97 (314)
T ss_dssp             CSCSEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHHH-H--------HTTSCS---EEESCTTGGGGGCCSE
T ss_pred             cCCCEEEEEeeCHHHHHHHHHH-HhCCCCCEEEEEECCHHHHHHH-H--------HCCCcc---hhcCCHHHHhhccCCE
Confidence            4458999999999999999998 57788  999999987543211 1        112111   12357788 8999999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      |++|+|.. .+..++ ++....+++|+++++++.......+++.+.+..
T Consensus        98 Vilavp~~-~~~~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~  144 (314)
T 3ggo_A           98 VMLSSPVR-TFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGK  144 (314)
T ss_dssp             EEECSCGG-GHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGG
T ss_pred             EEEeCCHH-HHHHHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCC
Confidence            99999954 344444 456677999999999987665445666666644

>1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium}

Probab=98.89  E-value=1.5e-09  Score=100.47  Aligned_cols=108  Identities=16%  Similarity=0.140  Sum_probs=82.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      .+|||||+|.||+.+|+.| ...|.+|.+|| +++.. +.+.        ..+     .....+++++++++|+|++|+|
T Consensus         4 m~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~-~~~~~-~~~~--------~~g-----~~~~~~~~~~~~~~D~vi~~vp   67 (295)
T 1yb4_A            4 MKLGFIGLGIMGSPMAINL-ARAGHQLHVTT-IGPVA-DELL--------SLG-----AVNVETARQVTEFADIIFIMVP   67 (295)
T ss_dssp             CEEEECCCSTTHHHHHHHH-HHTTCEEEECC-SSCCC-HHHH--------TTT-----CBCCSSHHHHHHTCSEEEECCS
T ss_pred             CEEEEEccCHHHHHHHHHH-HhCCCEEEEEc-CHHHH-HHHH--------HcC-----CcccCCHHHHHhcCCEEEEECC
Confidence            4899999999999999998 46799999999 66432 1111        111     2234688999999999999999


Q ss_pred             CCcccccccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       246 l~~~t~~li~~--~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      ...+++.++..  .....+++|.++|+++.|...+.+.|.+.+.+.
T Consensus        68 ~~~~~~~v~~~~~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  113 (295)
T 1yb4_A           68 DTPQVEDVLFGEHGCAKTSLQGKTIVDMSSISPIETKRFAQRVNEM  113 (295)
T ss_dssp             SHHHHHHHHHSTTSSTTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHhCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            76656666642  445678999999999999877888899988763

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=98.89  E-value=3.7e-09  Score=98.69  Aligned_cols=91  Identities=15%  Similarity=0.238  Sum_probs=70.6

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .++||||| +|.||..+|+.| ...|.+|.+||+++.                           .+.++++++||+|++|
T Consensus        21 ~~~I~iIGg~G~mG~~la~~l-~~~G~~V~~~~~~~~---------------------------~~~~~~~~~aDvVila   72 (298)
T 2pv7_A           21 IHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDW---------------------------AVAESILANADVVIVS   72 (298)
T ss_dssp             CCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCG---------------------------GGHHHHHTTCSEEEEC
T ss_pred             CCEEEEEcCCCHHHHHHHHHH-HhCCCeEEEEECCcc---------------------------cCHHHHhcCCCEEEEe
Confidence            57899999 999999999998 578999999997653                           2567788999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEH  285 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~a  285 (342)
                      +|.. .+..++. +....+++++++++++.......+++.+.
T Consensus        73 vp~~-~~~~vl~-~l~~~l~~~~iv~~~~svk~~~~~~~~~~  112 (298)
T 2pv7_A           73 VPIN-LTLETIE-RLKPYLTENMLLADLTSVKREPLAKMLEV  112 (298)
T ss_dssp             SCGG-GHHHHHH-HHGGGCCTTSEEEECCSCCHHHHHHHHHH
T ss_pred             CCHH-HHHHHHH-HHHhhcCCCcEEEECCCCCcHHHHHHHHh
Confidence            9954 4666664 34567899999999987664334444443

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=98.87  E-value=3.6e-09  Score=99.15  Aligned_cols=111  Identities=14%  Similarity=0.165  Sum_probs=83.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++|||||+|.||+.+|+.| ...|.+|.+||++++.. +.+.+        .+     .....++++++.++|+|++|+|
T Consensus        31 ~~I~iIG~G~mG~~~a~~l-~~~g~~V~~~~~~~~~~-~~~~~--------~g-----~~~~~~~~~~~~~~DvVi~av~   95 (316)
T 2uyy_A           31 KKIGFLGLGLMGSGIVSNL-LKMGHTVTVWNRTAEKC-DLFIQ--------EG-----ARLGRTPAEVVSTCDITFACVS   95 (316)
T ss_dssp             SCEEEECCSHHHHHHHHHH-HHTTCCEEEECSSGGGG-HHHHH--------TT-----CEECSCHHHHHHHCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHH--------cC-----CEEcCCHHHHHhcCCEEEEeCC
Confidence            6899999999999999998 46789999999987542 22111        11     1234578889999999999999


Q ss_pred             CCcccccccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 019387          246 LDKTTYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       246 l~~~t~~li~~--~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i  291 (342)
                      ....++.++..  ..+..+++|.++|+++.+.....+.+.+.+.....
T Consensus        96 ~~~~~~~v~~~~~~~~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~~~  143 (316)
T 2uyy_A           96 DPKAAKDLVLGPSGVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGG  143 (316)
T ss_dssp             SHHHHHHHHHSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHcCchhHhhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence            66666665543  24567899999999999877777888888865333

>2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A*

Probab=98.85  E-value=3e-09  Score=98.02  Aligned_cols=106  Identities=17%  Similarity=0.197  Sum_probs=80.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++|||||+|.||+.+|+.|+ . |.+|.+||++++.. +...+        .+     ..... +++++.++|+|++|+|
T Consensus         2 ~~i~iiG~G~~G~~~a~~l~-~-g~~V~~~~~~~~~~-~~~~~--------~g-----~~~~~-~~~~~~~~D~vi~~v~   64 (289)
T 2cvz_A            2 EKVAFIGLGAMGYPMAGHLA-R-RFPTLVWNRTFEKA-LRHQE--------EF-----GSEAV-PLERVAEARVIFTCLP   64 (289)
T ss_dssp             CCEEEECCSTTHHHHHHHHH-T-TSCEEEECSSTHHH-HHHHH--------HH-----CCEEC-CGGGGGGCSEEEECCS
T ss_pred             CeEEEEcccHHHHHHHHHHh-C-CCeEEEEeCCHHHH-HHHHH--------CC-----CcccC-HHHHHhCCCEEEEeCC
Confidence            47999999999999999984 6 99999999987542 22111        01     11123 6677889999999999


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      ....+..++ ++....+++|.++|+++.+...+.+.|.+.+.+.
T Consensus        65 ~~~~~~~v~-~~l~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~  107 (289)
T 2cvz_A           65 TTREVYEVA-EALYPYLREGTYWVDATSGEPEASRRLAERLREK  107 (289)
T ss_dssp             SHHHHHHHH-HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence            755566655 4555778999999999998888888899988764

>2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae}

Probab=98.84  E-value=7.5e-09  Score=103.38  Aligned_cols=117  Identities=15%  Similarity=0.232  Sum_probs=89.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc---CCEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVIS  241 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aDiV~  241 (342)
                      ..+|||||+|.||+.+|+.|+ ..|.+|.+||++++.. +.+.+.      ...  ..+.....+++++++.   +|+|+
T Consensus        10 ~~~IgvIGlG~MG~~lA~~La-~~G~~V~v~dr~~~~~-~~l~~~------~~~--~~gi~~~~s~~e~v~~l~~aDvVi   79 (497)
T 2p4q_A           10 SADFGLIGLAVMGQNLILNAA-DHGFTVCAYNRTQSKV-DHFLAN------EAK--GKSIIGATSIEDFISKLKRPRKVM   79 (497)
T ss_dssp             CCSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSSHHH-HHHHHT------TTT--TSSEECCSSHHHHHHTSCSSCEEE
T ss_pred             CCCEEEEeeHHHHHHHHHHHH-HCCCEEEEEeCCHHHH-HHHHcc------ccc--CCCeEEeCCHHHHHhcCCCCCEEE
Confidence            458999999999999999985 6689999999987643 222110      000  0123345689998887   99999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +++|....++.++ ++....+++|.++|+++.+...+...+.+.+.+..+.
T Consensus        80 l~Vp~~~~v~~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~  129 (497)
T 2p4q_A           80 LLVKAGAPVDALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGIL  129 (497)
T ss_dssp             ECCCSSHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             EEcCChHHHHHHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHcCCc
Confidence            9999877778777 4566789999999999999888888898888764444

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=98.82  E-value=1e-07  Score=91.38  Aligned_cols=228  Identities=15%  Similarity=0.183  Sum_probs=130.7

Q ss_pred             CCCchHHHHHHHhCCCeEEEecCCC--CCCCHHHHHHH----------hCCCceEEEecCCCCccHHHHHHhhccCCceE
Q 019387           23 PMPGTRWINLLIEQDCRVEICTQKK--TILSVEDIIAL----------IGDKCDGVIGQLTEDWGETLFAALSRAGGKAF   90 (342)
Q Consensus        23 ~~~~~~~~~~l~~~~~~v~~~~~~~--~~~~~~e~~~~----------~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i   90 (342)
                      .+.|+. .+.|.+.|++|.+.....  ...+.++..+.          +. ++|+|+.-. .+...+. ..+ +.|...+
T Consensus        17 ~~~P~~-v~~l~~~g~~v~ve~~ag~~~~f~d~~y~~aga~i~~~~~~~~-~ad~i~~vk-sP~~~~~-~~~-~~g~~~~   91 (361)
T 1pjc_A           17 GLSPSS-VRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVK-EPLPAEY-DLM-QKDQLLF   91 (361)
T ss_dssp             SCCHHH-HHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSS-CCCGGGG-GGC-CTTCEEE
T ss_pred             CcCHHH-HHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEECCHHHHh-cCCeEEEEC-CCCHHHH-Hhh-cCCCEEE
Confidence            344443 688888899998754332  34555555421          11 478877442 2332222 111 1232344


Q ss_pred             EEccccCCccChhHHHhCCeeEec---CCCCC-----chhHHHHHH--HHHHHHHhchHHHHHHHHcCCCCCCCCCcccc
Q 019387           91 SNMAVGYNNVDVNAANKYGIAVGN---TPGVL-----TETTAELAA--SLSLAAARRIVEADEFMRAGLYDGWLPNLFVG  160 (342)
Q Consensus        91 ~~~~~G~d~id~~~~~~~gI~V~n---~~~~~-----~~~vAE~~l--~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~  160 (342)
                      .......+.-.++.+.+.|+...|   .|...     -.++++.+=  +.++.... +...    ..|.  +..-. .. 
T Consensus        92 ~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~n-t~~~----~~g~--G~~l~-~l-  162 (361)
T 1pjc_A           92 TYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGARF-LERQ----QGGR--GVLLG-GV-  162 (361)
T ss_dssp             ECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHHH-TSGG----GTSC--CCCTT-CB-
T ss_pred             EEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHHH-Hhhc----cCCC--ceecc-CC-
Confidence            444444454446777888888765   34321     234444443  44444422 2110    1111  00000 01 


Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..+.+++|.|+|.|.+|+.+++.+ +++|++|+++|++++.. +.....+...      .........++.+.+.++|+|
T Consensus       163 ~~l~~~~VlViGaGgvG~~aa~~a-~~~Ga~V~v~dr~~~r~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~DvV  234 (361)
T 1pjc_A          163 PGVKPGKVVILGGGVVGTEAAKMA-VGLGAQVQIFDINVERL-SYLETLFGSR------VELLYSNSAEIETAVAEADLL  234 (361)
T ss_dssp             TTBCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHHGGG------SEEEECCHHHHHHHHHTCSEE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHHhhCce------eEeeeCCHHHHHHHHcCCCEE
Confidence            247789999999999999999996 79999999999987542 2211111000      000000113566778899999


Q ss_pred             EEcCCCCc-ccccccCHHHHhcCCCCcEEEEcC
Q 019387          241 SLHPVLDK-TTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~~pl~~-~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      +.|++... .+..++.++.++.|++|..++|++
T Consensus       235 I~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~  267 (361)
T 1pjc_A          235 IGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA  267 (361)
T ss_dssp             EECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             EECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence            99987533 245677889999999999999997

>2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A*

Probab=98.81  E-value=6.9e-09  Score=103.12  Aligned_cols=123  Identities=16%  Similarity=0.157  Sum_probs=90.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc---CCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aDiV~l  242 (342)
                      ++|||||+|.||+.+|+.|+ ..|.+|.+||++++.. +.+.+.+       +  ..+.....++++++..   +|+|++
T Consensus         6 ~~IgvIG~G~mG~~lA~~L~-~~G~~V~v~dr~~~~~-~~l~~~~-------~--~~gi~~~~s~~e~v~~l~~aDvVil   74 (474)
T 2iz1_A            6 ANFGVVGMAVMGKNLALNVE-SRGYTVAIYNRTTSKT-EEVFKEH-------Q--DKNLVFTKTLEEFVGSLEKPRRIML   74 (474)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSHHHH-HHHHHHT-------T--TSCEEECSSHHHHHHTBCSSCEEEE
T ss_pred             CcEEEEeeHHHHHHHHHHHH-hCCCEEEEEcCCHHHH-HHHHHhC-------c--CCCeEEeCCHHHHHhhccCCCEEEE
Confidence            57999999999999999984 6789999999987542 2222111       0  0122345689998876   999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~  300 (342)
                      |+|.+..+..++ ++....+++|.++|+++.|...+...+.+.+.+..+.....-|+.
T Consensus        75 avp~~~~v~~vl-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g  131 (474)
T 2iz1_A           75 MVQAGAATDATI-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSG  131 (474)
T ss_dssp             CCCTTHHHHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECS
T ss_pred             EccCchHHHHHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCC
Confidence            999877777777 355677899999999999987788888888876545444444443

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=98.81  E-value=4e-09  Score=100.31  Aligned_cols=96  Identities=23%  Similarity=0.250  Sum_probs=71.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..+.+++|||||+|.||+++|+.| +..|++|++++++++...+...        ..+     +... ++++++++||+|
T Consensus        12 ~~l~~~~I~IIG~G~mG~alA~~L-~~~G~~V~~~~~~~~~~~~~a~--------~~G-----~~~~-~~~e~~~~aDvV   76 (338)
T 1np3_A           12 SIIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAKAE--------AHG-----LKVA-DVKTAVAAADVV   76 (338)
T ss_dssp             HHHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHHHH--------HTT-----CEEE-CHHHHHHTCSEE
T ss_pred             chhcCCEEEEECchHHHHHHHHHH-HHCcCEEEEEECChHHHHHHHH--------HCC-----CEEc-cHHHHHhcCCEE
Confidence            467899999999999999999997 6789999999998654222111        111     1122 788999999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      ++|+|.. ....++.++....+++|+++++++
T Consensus        77 ilavp~~-~~~~v~~~~i~~~l~~~~ivi~~~  107 (338)
T 1np3_A           77 MILTPDE-FQGRLYKEEIEPNLKKGATLAFAH  107 (338)
T ss_dssp             EECSCHH-HHHHHHHHHTGGGCCTTCEEEESC
T ss_pred             EEeCCcH-HHHHHHHHHHHhhCCCCCEEEEcC
Confidence            9999954 335555545556799999999874

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=98.80  E-value=2.4e-08  Score=82.78  Aligned_cols=104  Identities=13%  Similarity=0.215  Sum_probs=75.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      |++|+|+|.|.||+.+++.| ...|++|.++|++++.. +.+.+.++          .......++++++.++|+|+.|+
T Consensus        21 ~~~v~iiG~G~iG~~~a~~l-~~~g~~v~v~~r~~~~~-~~~a~~~~----------~~~~~~~~~~~~~~~~Divi~at   88 (144)
T 3oj0_A           21 GNKILLVGNGMLASEIAPYF-SYPQYKVTVAGRNIDHV-RAFAEKYE----------YEYVLINDIDSLIKNNDVIITAT   88 (144)
T ss_dssp             CCEEEEECCSHHHHHHGGGC-CTTTCEEEEEESCHHHH-HHHHHHHT----------CEEEECSCHHHHHHTCSEEEECS
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEEcCCHHHH-HHHHHHhC----------CceEeecCHHHHhcCCCEEEEeC
Confidence            88999999999999999997 67899999999987542 22222221          11123468899999999999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCcc-------cCHHHHHHHH
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV-------IDEVALVEHL  286 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-------vd~~aL~~aL  286 (342)
                      |.+   ..++..   +.+++|.+++|++...-       ++.++|.+.+
T Consensus        89 ~~~---~~~~~~---~~l~~g~~vid~~~p~~~~~~~~~~~~d~l~~~~  131 (144)
T 3oj0_A           89 SSK---TPIVEE---RSLMPGKLFIDLGNPPNIERGNNVITLDEIYEIS  131 (144)
T ss_dssp             CCS---SCSBCG---GGCCTTCEEEECCSSCSBCCSTTSEEHHHHHHHH
T ss_pred             CCC---CcEeeH---HHcCCCCEEEEccCCccCCCCCEEEeHHHHHHHH
Confidence            864   345554   45788999999987543       3445555544

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=98.25  E-value=7.5e-10  Score=97.76  Aligned_cols=94  Identities=18%  Similarity=0.194  Sum_probs=71.7

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +.+++|||||+|+||+.+|+.| ...|.+|.+||++++ . +.+.        ..     +... .+++++++++|+|++
T Consensus        17 ~~~~~I~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~-~-~~~~--------~~-----g~~~-~~~~~~~~~aDvVil   79 (201)
T 2yjz_A           17 EKQGVVCIFGTGDFGKSLGLKM-LQCGYSVVFGSRNPQ-V-SSLL--------PR-----GAEV-LCYSEAASRSDVIVL   79 (201)
Confidence            6788999999999999999997 578999999998764 1 1110        00     1112 367788899999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCccc
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v  277 (342)
                      ++|.. .++.++   .+..+++|+++||+++|-..
T Consensus        80 av~~~-~~~~v~---~l~~~~~~~ivI~~~~G~~~  110 (201)
T 2yjz_A           80 AVHRE-HYDFLA---ELADSLKGRVLIDVSNNQKM  110 (201)
Confidence            99964 677776   25567789999999999753

>2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A*

Probab=98.77  E-value=1.3e-08  Score=101.25  Aligned_cols=124  Identities=16%  Similarity=0.231  Sum_probs=89.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh---cCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR---EADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~---~aDiV~l  242 (342)
                      .+|||||+|.||+.+|..|+ ..|.+|.+||++++.. +.+.+.     ...+   .+.....++++++.   ++|+|++
T Consensus         3 m~IgvIG~G~mG~~lA~~La-~~G~~V~v~dr~~~~~-~~l~~~-----~~~g---~gi~~~~~~~e~v~~l~~aDvVil   72 (482)
T 2pgd_A            3 ADIALIGLAVMGQNLILNMN-DHGFVVCAFNRTVSKV-DDFLAN-----EAKG---TKVLGAHSLEEMVSKLKKPRRIIL   72 (482)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSTHHH-HHHHHT-----TTTT---SSCEECSSHHHHHHHBCSSCEEEE
T ss_pred             CeEEEEChHHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHhc-----cccC---CCeEEeCCHHHHHhhccCCCEEEE
Confidence            47999999999999999984 6789999999987542 222110     0000   12233568888875   8999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~  300 (342)
                      |+|....++.++. +....+++|.++|+++.|...+...+.+.+.+..+.....-|+.
T Consensus        73 aVp~~~~v~~vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g  129 (482)
T 2pgd_A           73 LVKAGQAVDNFIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSG  129 (482)
T ss_dssp             CSCTTHHHHHHHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEES
T ss_pred             eCCChHHHHHHHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCC
Confidence            9997767777774 55677899999999999988777888888876545444334443

>1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6

Probab=98.75  E-value=2.3e-08  Score=99.49  Aligned_cols=125  Identities=17%  Similarity=0.203  Sum_probs=89.7

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc---CCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aDiV~l~  243 (342)
                      +|||||+|.||+.+|+.|+ ..|.+|.+||++++.. +.+.+.++.  .   ..+.......++++++..   +|+|++|
T Consensus         3 kIgVIG~G~mG~~lA~~La-~~G~~V~v~dr~~~~~-~~l~~~~g~--~---~~~~~i~~~~~~~e~v~~l~~aDvVila   75 (478)
T 1pgj_A            3 DVGVVGLGVMGANLALNIA-EKGFKVAVFNRTYSKS-EEFMKANAS--A---PFAGNLKAFETMEAFAASLKKPRKALIL   75 (478)
T ss_dssp             SEEEECCSHHHHHHHHHHH-HTTCCEEEECSSHHHH-HHHHHHTTT--S---TTGGGEEECSCHHHHHHHBCSSCEEEEC
T ss_pred             EEEEEChHHHHHHHHHHHH-HCCCEEEEEeCCHHHH-HHHHHhcCC--C---CCCCCeEEECCHHHHHhcccCCCEEEEe
Confidence            6999999999999999984 6789999999987542 222211110  0   001112345688888875   9999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~  299 (342)
                      +|....++.++ ++....+++|.++|+++.|...+.+.+.+.+.+..+.....-|.
T Consensus        76 Vp~~~~v~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~  130 (478)
T 1pgj_A           76 VQAGAATDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGIS  130 (478)
T ss_dssp             CCCSHHHHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEE
T ss_pred             cCChHHHHHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeecc
Confidence            99766777777 45567789999999999998778888989888755544333443

>3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I*

Probab=98.74  E-value=9e-09  Score=101.31  Aligned_cols=102  Identities=20%  Similarity=0.189  Sum_probs=70.9

Q ss_pred             cccCC-CeEEEEecCHHHHHHHHHHHhcC------CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH
Q 019387          161 NLLKG-QTVGVIGAGRIGSAYARMMVEGF------KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (342)
Q Consensus       161 ~~L~g-ktvgIvG~G~IG~~vA~~l~~af------g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  233 (342)
                      ..|.| |+|||||+|+||+++|+.| +..      |++|++.++......+...        ..+.... .....+++++
T Consensus        49 ~~L~GiKkIgIIGlGsMG~AmA~nL-r~s~~~~g~G~~ViVg~r~~sks~e~A~--------e~G~~v~-d~ta~s~aEA  118 (525)
T 3fr7_A           49 EAFKGIKQIGVIGWGSQGPAQAQNL-RDSLAEAKSDIVVKIGLRKGSKSFDEAR--------AAGFTEE-SGTLGDIWET  118 (525)
T ss_dssp             HHTTTCSEEEEECCTTHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHHHHH--------HTTCCTT-TTCEEEHHHH
T ss_pred             HHhcCCCEEEEEeEhHHHHHHHHHH-HhcccccCCCCEEEEEeCCchhhHHHHH--------HCCCEEe-cCCCCCHHHH
Confidence            57899 9999999999999999997 455      9998865554322111110        1111100 0012578999


Q ss_pred             hhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       234 l~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      +++||+|++++|..... .++. +.+..||+|++ |-++-|-
T Consensus       119 a~~ADVVILaVP~~~~~-eVl~-eI~p~LK~GaI-Ls~AaGf  157 (525)
T 3fr7_A          119 VSGSDLVLLLISDAAQA-DNYE-KIFSHMKPNSI-LGLSHGF  157 (525)
T ss_dssp             HHHCSEEEECSCHHHHH-HHHH-HHHHHSCTTCE-EEESSSH
T ss_pred             HhcCCEEEECCChHHHH-HHHH-HHHHhcCCCCe-EEEeCCC
Confidence            99999999999975553 4665 68899999998 5677773

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=98.70  E-value=6.9e-08  Score=95.26  Aligned_cols=167  Identities=16%  Similarity=0.125  Sum_probs=102.4

Q ss_pred             CCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCC------CCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcC
Q 019387          115 TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG------WLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (342)
Q Consensus       115 ~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~------w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~af  188 (342)
                      ..|.|--.|.|.+.+++|...|..         ++|.-      |...    ..-.=++|||||.|.||..+|..|+ ..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~~---------~~w~~p~~~~~~~~~----~~~~i~kVaVIGaG~MG~~IA~~la-~a   76 (460)
T 3k6j_A           11 STGENLYFQGSEVRSYLMEAHSLA---------GQWSLPNDRGDHTNS----EAYDVNSVAIIGGGTMGKAMAICFG-LA   76 (460)
T ss_dssp             TTSGGGGGCBCHHHHHHHHTTCCT---------TSCBCSTTSCBTTSC----CCCCCCEEEEECCSHHHHHHHHHHH-HT
T ss_pred             ccccchhhhhHHHHHHHHhHHHhh---------ccccCCCCccccccC----CcccCCEEEEECCCHHHHHHHHHHH-HC
Confidence            344555666777777777744332         33421      2111    1112268999999999999999985 56


Q ss_pred             CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--------ccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387          189 KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--------VTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       189 g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~  260 (342)
                      |.+|++||++++.........+.... ..+...        .......+++ .+++||+|+.++|.+.+.+.-+-++...
T Consensus        77 G~~V~l~D~~~e~a~~~i~~~l~~~~-~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~  154 (460)
T 3k6j_A           77 GIETFLVVRNEQRCKQELEVMYAREK-SFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLEN  154 (460)
T ss_dssp             TCEEEEECSCHHHHHHHHHHHHHHHH-HTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECcHHHHHHHHHHHHHHHH-HcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHh
Confidence            99999999998632111111111111 111110        0112345675 6899999999999777666555566777


Q ss_pred             cCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 019387          261 TMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (342)
Q Consensus       261 ~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~  300 (342)
                      .++++++|++.+.+  +....+.+++.. .-..+++..|.
T Consensus       155 ~~~~~aIlasnTSs--l~i~~ia~~~~~-p~r~iG~Hffn  191 (460)
T 3k6j_A          155 ICKSTCIFGTNTSS--LDLNEISSVLRD-PSNLVGIHFFN  191 (460)
T ss_dssp             TSCTTCEEEECCSS--SCHHHHHTTSSS-GGGEEEEECCS
T ss_pred             hCCCCCEEEecCCC--hhHHHHHHhccC-CcceEEEEecc
Confidence            89999999644333  455667666543 45678888777

>1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6

Probab=98.70  E-value=2.7e-08  Score=90.64  Aligned_cols=102  Identities=13%  Similarity=0.082  Sum_probs=74.4

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch-hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|||||+|+||+.+|+.|+ ..|.+|++||+... ...+...+        .+     ..  .++++++.+||+|++|+|
T Consensus         2 ~I~iIG~G~mG~~la~~l~-~~g~~V~~~~~~~~~~~~~~~~~--------~g-----~~--~~~~~~~~~aDvvi~~v~   65 (264)
T 1i36_A            2 RVGFIGFGEVAQTLASRLR-SRGVEVVTSLEGRSPSTIERART--------VG-----VT--ETSEEDVYSCPVVISAVT   65 (264)
T ss_dssp             EEEEESCSHHHHHHHHHHH-HTTCEEEECCTTCCHHHHHHHHH--------HT-----CE--ECCHHHHHTSSEEEECSC
T ss_pred             eEEEEechHHHHHHHHHHH-HCCCeEEEeCCccCHHHHHHHHH--------CC-----Cc--CCHHHHHhcCCEEEEECC
Confidence            7999999999999999984 67899999988311 12222111        11     11  467888899999999999


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      .......+  .+.+..+++  ++||++.+...+.+.|.+.+.+
T Consensus        66 ~~~~~~~~--~~~~~~~~~--~vi~~s~~~~~~~~~l~~~~~~  104 (264)
T 1i36_A           66 PGVALGAA--RRAGRHVRG--IYVDINNISPETVRMASSLIEK  104 (264)
T ss_dssp             GGGHHHHH--HHHHTTCCS--EEEECSCCCHHHHHHHHHHCSS
T ss_pred             CHHHHHHH--HHHHHhcCc--EEEEccCCCHHHHHHHHHHHhh
Confidence            75555544  455667776  9999998877777788888765

>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}

Probab=98.69  E-value=8.8e-07  Score=81.68  Aligned_cols=171  Identities=18%  Similarity=0.188  Sum_probs=108.2

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC----C-CceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG----D-KCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~----~-~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+.    + +.++++++.+  ..++++ +++...-         .--+|.+--
T Consensus        58 k~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p---------~KDVDG~~~  127 (286)
T 4a5o_A           58 KDCEEVGFLSQAYDLPA-ETSQDDLLALIDRLNDDPAIDGILVQLPLPAHLDASLLLERIHP---------DKDVDGFHP  127 (286)
T ss_dssp             HHHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHTSCG---------GGCTTCCSH
T ss_pred             HHHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEEcCCCCCCcCHHHHHhhCCc---------ccccccCCh
Confidence            44566787776655443 357888877652    1 5789998864  344443 3333211         112333321


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      -   ..|-...+.++ ....++.-++-    ++++                     .+.++.||++.|||.|. +|+.+|
T Consensus       128 ~---N~g~l~~g~~~-~~PcTp~gv~~----lL~~---------------------~~i~l~Gk~vvVvGrs~iVG~plA  178 (286)
T 4a5o_A          128 Y---NIGRLAQRMPL-LRPCTPKGIMT----LLAS---------------------TGADLYGMDAVVVGASNIVGRPMA  178 (286)
T ss_dssp             H---HHHHHHTTCCS-SCCHHHHHHHH----HHHH---------------------TTCCCTTCEEEEECTTSTTHHHHH
T ss_pred             h---hhHHHhcCCCC-CCCCCHHHHHH----HHHH---------------------hCCCCCCCEEEEECCCchhHHHHH
Confidence            0   01111112232 34455555432    2221                     13578999999999988 799999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      ..| ...|++|+...++.                            .++++.+++||+|+.+++.    .++|..+.   
T Consensus       179 ~lL-~~~gAtVtv~hs~T----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  222 (286)
T 4a5o_A          179 LEL-LLGGCTVTVTHRFT----------------------------RDLADHVSRADLVVVAAGK----PGLVKGEW---  222 (286)
T ss_dssp             HHH-HHTTCEEEEECTTC----------------------------SCHHHHHHTCSEEEECCCC----TTCBCGGG---
T ss_pred             HHH-HHCCCeEEEEeCCC----------------------------cCHHHHhccCCEEEECCCC----CCCCCHHH---
Confidence            997 68899999876431                            4788999999999999974    45787755   


Q ss_pred             CCCCcEEEEcCCCcc
Q 019387          262 MKKEAILVNCSRGPV  276 (342)
Q Consensus       262 mk~ga~lINvaRG~~  276 (342)
                      +|+|+++||++.-.+
T Consensus       223 vk~GavVIDvgi~~~  237 (286)
T 4a5o_A          223 IKEGAIVIDVGINRQ  237 (286)
T ss_dssp             SCTTCEEEECCSCSS
T ss_pred             cCCCeEEEEeccccc
Confidence            599999999986543

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=98.69  E-value=9.2e-09  Score=97.95  Aligned_cols=93  Identities=15%  Similarity=0.260  Sum_probs=68.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc----CCEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----ADVI  240 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~----aDiV  240 (342)
                      -++|||||+|.||.++|+.| +..|.+|++||++++..... .        ..+     .....++++++++    ||+|
T Consensus         8 ~~kIgIIG~G~mG~slA~~L-~~~G~~V~~~dr~~~~~~~a-~--------~~G-----~~~~~~~~e~~~~a~~~aDlV   72 (341)
T 3ktd_A            8 SRPVCILGLGLIGGSLLRDL-HAANHSVFGYNRSRSGAKSA-V--------DEG-----FDVSADLEATLQRAAAEDALI   72 (341)
T ss_dssp             SSCEEEECCSHHHHHHHHHH-HHTTCCEEEECSCHHHHHHH-H--------HTT-----CCEESCHHHHHHHHHHTTCEE
T ss_pred             CCEEEEEeecHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH-H--------HcC-----CeeeCCHHHHHHhcccCCCEE
Confidence            35799999999999999998 67899999999987543211 1        112     1224678887765    7999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      ++|+|. ..+..++.  .+..+++|++++|++.-.
T Consensus        73 ilavP~-~~~~~vl~--~l~~~~~~~iv~Dv~Svk  104 (341)
T 3ktd_A           73 VLAVPM-TAIDSLLD--AVHTHAPNNGFTDVVSVK  104 (341)
T ss_dssp             EECSCH-HHHHHHHH--HHHHHCTTCCEEECCSCS
T ss_pred             EEeCCH-HHHHHHHH--HHHccCCCCEEEEcCCCC
Confidence            999994 45666663  344458999999997654

>1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus}

Probab=98.68  E-value=2.6e-08  Score=92.90  Aligned_cols=133  Identities=19%  Similarity=0.186  Sum_probs=86.5

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      -+.|+|||||+|.||..+|+.| . .|.+|++||++++.. +...+.+    ..  ....+....+++++ +++||+|+.
T Consensus        10 ~~~~~V~vIG~G~MG~~iA~~l-a-aG~~V~v~d~~~~~~-~~~~~~l----~~--~~~~~i~~~~~~~~-~~~aDlVie   79 (293)
T 1zej_A           10 HHHMKVFVIGAGLMGRGIAIAI-A-SKHEVVLQDVSEKAL-EAAREQI----PE--ELLSKIEFTTTLEK-VKDCDIVME   79 (293)
T ss_dssp             --CCEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHHH-HHHHHHS----CG--GGGGGEEEESSCTT-GGGCSEEEE
T ss_pred             cCCCeEEEEeeCHHHHHHHHHH-H-cCCEEEEEECCHHHH-HHHHHHH----HH--HHhCCeEEeCCHHH-HcCCCEEEE
Confidence            4578999999999999999998 5 799999999987643 2221110    00  00001223456766 799999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEE-EcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILV-NCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lI-NvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      |+|.+.+.+..+-.+ +..+ +|++++ |+|.   +....+.+++. ...+..++-.|.+.+  +-+.+.|+
T Consensus        80 avpe~~~vk~~l~~~-l~~~-~~~IlasntSt---i~~~~~a~~~~-~~~r~~G~Hf~~Pv~~~~lveiv~g  145 (293)
T 1zej_A           80 AVFEDLNTKVEVLRE-VERL-TNAPLCSNTSV---ISVDDIAERLD-SPSRFLGVHWMNPPHVMPLVEIVIS  145 (293)
T ss_dssp             CCCSCHHHHHHHHHH-HHTT-CCSCEEECCSS---SCHHHHHTTSS-CGGGEEEEEECSSTTTCCEEEEEEC
T ss_pred             cCcCCHHHHHHHHHH-HhcC-CCCEEEEECCC---cCHHHHHHHhh-cccceEeEEecCccccCCEEEEECC
Confidence            999888766555443 6667 899885 7876   44455655553 344567777776332  44445554

>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A

Probab=98.67  E-value=3.2e-08  Score=91.49  Aligned_cols=109  Identities=19%  Similarity=0.194  Sum_probs=77.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      ++|||||+|.||+.+|+.|++ ++|.+|++||++++.. +...        ..+...   ....++++++.+||+|++|+
T Consensus         7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~-~~~~--------~~g~~~---~~~~~~~~~~~~aDvVilav   74 (290)
T 3b1f_A            7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSR-DIAL--------ERGIVD---EATADFKVFAALADVIILAV   74 (290)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHH-HHHH--------HTTSCS---EEESCTTTTGGGCSEEEECS
T ss_pred             ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHH-HHHH--------HcCCcc---cccCCHHHhhcCCCEEEEcC
Confidence            589999999999999998753 2478999999987542 2111        111110   12356777889999999999


Q ss_pred             CCCcccccccCHHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          245 VLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~-mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      |.. ....++. +.... ++++.++++++.......+.+.+.+.+
T Consensus        75 p~~-~~~~v~~-~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~  117 (290)
T 3b1f_A           75 PIK-KTIDFIK-ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKD  117 (290)
T ss_dssp             CHH-HHHHHHH-HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTT
T ss_pred             CHH-HHHHHHH-HHHhcCCCCCCEEEECCCCchHHHHHHHHhccc
Confidence            953 3344543 34566 899999999998776666778887765

>3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis}

Probab=98.63  E-value=3.3e-08  Score=90.24  Aligned_cols=102  Identities=13%  Similarity=0.188  Sum_probs=73.3

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .++.+.+|||||+|.||+.+|+.|+ ..|.+ |.+||++++.. +...+.+       +     .....+++++++++|+
T Consensus         6 ~~~~~m~i~iiG~G~mG~~~a~~l~-~~g~~~v~~~~~~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~~Dv   71 (266)
T 3d1l_A            6 RSIEDTPIVLIGAGNLATNLAKALY-RKGFRIVQVYSRTEESA-RELAQKV-------E-----AEYTTDLAEVNPYAKL   71 (266)
T ss_dssp             -CGGGCCEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSHHHH-HHHHHHT-------T-----CEEESCGGGSCSCCSE
T ss_pred             cCCCCCeEEEEcCCHHHHHHHHHHH-HCCCeEEEEEeCCHHHH-HHHHHHc-------C-----CceeCCHHHHhcCCCE
Confidence            4556779999999999999999984 56888 88999987542 2221111       1     1224578888899999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd  278 (342)
                      |++|+|.. ....++ ++....+++|+++|+++.|-..+
T Consensus        72 vi~av~~~-~~~~v~-~~l~~~~~~~~ivv~~s~~~~~~  108 (266)
T 3d1l_A           72 YIVSLKDS-AFAELL-QGIVEGKREEALMVHTAGSIPMN  108 (266)
T ss_dssp             EEECCCHH-HHHHHH-HHHHTTCCTTCEEEECCTTSCGG
T ss_pred             EEEecCHH-HHHHHH-HHHHhhcCCCcEEEECCCCCchH
Confidence            99999954 334444 34456788999999999987654

>2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens}

Probab=98.63  E-value=1.3e-07  Score=88.77  Aligned_cols=116  Identities=18%  Similarity=0.174  Sum_probs=79.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .+++|||||+|.||+.+++.|++.+|. +|.+||++++. .+.+.+.+       +.   ......+++++++++|+|++
T Consensus       134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~-~~~l~~~~-------~~---~~~~~~~~~e~v~~aDiVi~  202 (312)
T 2i99_A          134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKEN-AEKFADTV-------QG---EVRVCSSVQEAVAGADVIIT  202 (312)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHH-HHHHHHHS-------SS---CCEECSSHHHHHTTCSEEEE
T ss_pred             CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHH-HHHHHHHh-------hC---CeEEeCCHHHHHhcCCEEEE
Confidence            467999999999999999987655687 89999998754 23322211       10   12234689999999999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~  299 (342)
                      |+|.   +..++..   ..+++|.++++++....-. ..|.+.+.+..  ...+|-.
T Consensus       203 atp~---~~~v~~~---~~l~~g~~vi~~g~~~p~~-~el~~~~~~~g--~~~vD~~  250 (312)
T 2i99_A          203 VTLA---TEPILFG---EWVKPGAHINAVGASRPDW-RELDDELMKEA--VLYVDSQ  250 (312)
T ss_dssp             CCCC---SSCCBCG---GGSCTTCEEEECCCCSTTC-CSBCHHHHHHS--EEEESCH
T ss_pred             EeCC---CCcccCH---HHcCCCcEEEeCCCCCCCc-eeccHHHHhcC--EEEECCH
Confidence            9984   4566655   5789999999997665422 33443333222  2556743

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=98.60  E-value=1.5e-07  Score=93.15  Aligned_cols=122  Identities=14%  Similarity=0.220  Sum_probs=82.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhc-CCcEEEEEcCCchhHHHHHHhhh--------hhhhhccCCCCccccccCCHHHHhhc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~a-fg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~ll~~  236 (342)
                      ++|+|||+|.||..+|..|++. .|.+|++||++++.. +......        ..+....  ...+.....++++.+++
T Consensus         6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~-~~l~~g~~~i~e~~l~~~~~~~--~~~~~~~t~~~~e~~~~   82 (467)
T 2q3e_A            6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRI-NAWNSPTLPIYEPGLKEVVESC--RGKNLFFSTNIDDAIKE   82 (467)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHH-HHHTSSSCSSCCTTHHHHHHHH--BTTTEEEESCHHHHHHH
T ss_pred             cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHH-HHHhCCCCCcCCCCHHHHHHHh--hcCCEEEECCHHHHHhc
Confidence            4899999999999999998643 289999999987542 2211000        0000000  00112234678888999


Q ss_pred             CCEEEEcCCCCccccccc-------------CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          237 ADVISLHPVLDKTTYHLI-------------NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li-------------~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      ||+|++|+|...+..+.+             -+.....+++|+++||.+...+-..+.+.+.|++..
T Consensus        83 aDvViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~  149 (467)
T 2q3e_A           83 ADLVFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANT  149 (467)
T ss_dssp             CSEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTC
T ss_pred             CCEEEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhC
Confidence            999999999655444322             123556789999999999988877888888887753

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=98.60  E-value=7.7e-08  Score=85.43  Aligned_cols=95  Identities=16%  Similarity=0.213  Sum_probs=68.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+++|+|||.|.||+.+|+.| ...|.+|.++|++++.. +.+        ...+     ... .+++++++++|+|++|
T Consensus        27 ~~~~I~iiG~G~~G~~la~~l-~~~g~~V~~~~r~~~~~-~~~--------~~~g-----~~~-~~~~~~~~~~DvVi~a   90 (215)
T 2vns_A           27 EAPKVGILGSGDFARSLATRL-VGSGFKVVVGSRNPKRT-ARL--------FPSA-----AQV-TFQEEAVSSPEVIFVA   90 (215)
T ss_dssp             --CCEEEECCSHHHHHHHHHH-HHTTCCEEEEESSHHHH-HHH--------SBTT-----SEE-EEHHHHTTSCSEEEEC
T ss_pred             CCCEEEEEccCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH--------HHcC-----Cce-ecHHHHHhCCCEEEEC
Confidence            357899999999999999998 56789999999986532 211        1111     111 2788889999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd  278 (342)
                      +|. .....++.   +..+.+|+++|+++.|-..+
T Consensus        91 v~~-~~~~~v~~---l~~~~~~~~vv~~s~g~~~~  121 (215)
T 2vns_A           91 VFR-EHYSSLCS---LSDQLAGKILVDVSNPTEQE  121 (215)
T ss_dssp             SCG-GGSGGGGG---GHHHHTTCEEEECCCCCHHH
T ss_pred             CCh-HHHHHHHH---HHHhcCCCEEEEeCCCcccc
Confidence            994 45555653   33333799999999987543

>2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A

Probab=98.57  E-value=5.2e-07  Score=81.87  Aligned_cols=102  Identities=16%  Similarity=0.222  Sum_probs=73.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      .+|||||+|.||+.+++.| ...|.+|.+||++++.. +.+.+.+       +     .....+++++++++|+|++|+|
T Consensus         4 m~i~iiG~G~mG~~~a~~l-~~~g~~v~~~~~~~~~~-~~~~~~~-------g-----~~~~~~~~~~~~~~D~Vi~~v~   69 (259)
T 2ahr_A            4 MKIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERS-KEIAEQL-------A-----LPYAMSHQDLIDQVDLVILGIK   69 (259)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHH-HHHHHHH-------T-----CCBCSSHHHHHHTCSEEEECSC
T ss_pred             cEEEEECCCHHHHHHHHHH-HhCCCeEEEECCCHHHH-HHHHHHc-------C-----CEeeCCHHHHHhcCCEEEEEeC
Confidence            4899999999999999997 57788999999987542 2222111       1     1234688899999999999999


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                       +...     .+.+..+++|.++|+...|--  .+.+.+.+..+
T Consensus        70 -~~~~-----~~v~~~l~~~~~vv~~~~~~~--~~~l~~~~~~~  105 (259)
T 2ahr_A           70 -PQLF-----ETVLKPLHFKQPIISMAAGIS--LQRLATFVGQD  105 (259)
T ss_dssp             -GGGH-----HHHHTTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred             -cHhH-----HHHHHHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence             3333     345556778999999976643  45576766543

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=98.57  E-value=5.8e-08  Score=85.89  Aligned_cols=80  Identities=15%  Similarity=0.227  Sum_probs=60.7

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .++.+++|+|||.|+||..+|+.| ...|.+|.+||++++                                .+++||+|
T Consensus        15 ~~~~~~~I~iiG~G~mG~~la~~l-~~~g~~V~~~~~~~~--------------------------------~~~~aD~v   61 (209)
T 2raf_A           15 LYFQGMEITIFGKGNMGQAIGHNF-EIAGHEVTYYGSKDQ--------------------------------ATTLGEIV   61 (209)
T ss_dssp             -----CEEEEECCSHHHHHHHHHH-HHTTCEEEEECTTCC--------------------------------CSSCCSEE
T ss_pred             cccCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEcCCHH--------------------------------HhccCCEE
Confidence            467889999999999999999998 477999999987531                                35789999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      ++|+| ++.++.++.+ ....++ ++++|++++|--
T Consensus        62 i~av~-~~~~~~v~~~-l~~~~~-~~~vi~~~~g~~   94 (209)
T 2raf_A           62 IMAVP-YPALAALAKQ-YATQLK-GKIVVDITNPLN   94 (209)
T ss_dssp             EECSC-HHHHHHHHHH-THHHHT-TSEEEECCCCBC
T ss_pred             EEcCC-cHHHHHHHHH-HHHhcC-CCEEEEECCCCC
Confidence            99999 5666666543 334567 999999999765

>3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A*

Probab=98.56  E-value=2.8e-07  Score=90.21  Aligned_cols=124  Identities=15%  Similarity=0.259  Sum_probs=82.7

Q ss_pred             cccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh--------hhhhhccCCCCccccccCCH
Q 019387          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       159 ~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .+++..-.+|+|||+|.||..+|..|+ . |.+|++||+.++. .+......        ..++.. .  ........++
T Consensus        30 ~~r~~~~mkIaVIGlG~mG~~lA~~La-~-G~~V~~~D~~~~~-v~~l~~g~~~i~e~~l~~ll~~-~--~~~l~~ttd~  103 (432)
T 3pid_A           30 MGRGSEFMKITISGTGYVGLSNGVLIA-Q-NHEVVALDIVQAK-VDMLNQKISPIVDKEIQEYLAE-K--PLNFRATTDK  103 (432)
T ss_dssp             -----CCCEEEEECCSHHHHHHHHHHH-T-TSEEEEECSCHHH-HHHHHTTCCSSCCHHHHHHHHH-S--CCCEEEESCH
T ss_pred             cccccCCCEEEEECcCHHHHHHHHHHH-c-CCeEEEEecCHHH-hhHHhccCCccccccHHHHHhh-c--cCCeEEEcCH
Confidence            456666779999999999999999985 4 9999999998754 22221110        000000 0  0123344688


Q ss_pred             HHHhhcCCEEEEcCCCCccc-------ccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          231 DEVLREADVISLHPVLDKTT-------YHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       231 ~~ll~~aDiV~l~~pl~~~t-------~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      ++.+++||+|++|+|...+.       ..+..  +.... +++|+++|+.+.-.+-..+.+.+.+.+.
T Consensus       104 ~ea~~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~  170 (432)
T 3pid_A          104 HDAYRNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGID  170 (432)
T ss_dssp             HHHHTTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCC
T ss_pred             HHHHhCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhc
Confidence            89999999999999965321       11221  34455 9999999999988887888888888764

>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6

Probab=98.55  E-value=1e-07  Score=87.41  Aligned_cols=104  Identities=18%  Similarity=0.187  Sum_probs=73.0

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|+|||+|+||+.+|+.| ...|.+|++||++++.. +... .       .+...   ....+++++ .++|+|++|+|.
T Consensus         2 ~i~iiG~G~~G~~~a~~l-~~~g~~V~~~~~~~~~~-~~~~-~-------~g~~~---~~~~~~~~~-~~~D~vi~av~~   67 (279)
T 2f1k_A            2 KIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTC-EKAV-E-------RQLVD---EAGQDLSLL-QTAKIIFLCTPI   67 (279)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHH-H-------TTSCS---EEESCGGGG-TTCSEEEECSCH
T ss_pred             EEEEEcCcHHHHHHHHHH-HHCCCEEEEEECCHHHH-HHHH-h-------CCCCc---cccCCHHHh-CCCCEEEEECCH
Confidence            799999999999999997 56789999999987543 2211 1       11111   123567788 899999999994


Q ss_pred             CcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       247 ~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL  286 (342)
                       ..+..++. +....+++++++||++.......+.+.+.+
T Consensus        68 -~~~~~~~~-~l~~~~~~~~~vv~~~~~~~~~~~~~~~~~  105 (279)
T 2f1k_A           68 -QLILPTLE-KLIPHLSPTAIVTDVASVKTAIAEPASQLW  105 (279)
T ss_dssp             -HHHHHHHH-HHGGGSCTTCEEEECCSCCHHHHHHHHHHS
T ss_pred             -HHHHHHHH-HHHhhCCCCCEEEECCCCcHHHHHHHHHHh
Confidence             34455553 445678999999999776655555555543

>3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579}

Probab=98.54  E-value=1.9e-07  Score=84.50  Aligned_cols=105  Identities=23%  Similarity=0.315  Sum_probs=73.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCc----EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKM----NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      ++|||||+|+||+.+|+.| ...|.    +|.+||++++.. +.+.+.+            +.....+.++++++||+|+
T Consensus         3 ~~i~iIG~G~mG~~~a~~l-~~~g~~~~~~V~~~~r~~~~~-~~~~~~~------------g~~~~~~~~e~~~~aDvVi   68 (247)
T 3gt0_A            3 KQIGFIGCGNMGMAMIGGM-INKNIVSSNQIICSDLNTANL-KNASEKY------------GLTTTTDNNEVAKNADILI   68 (247)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTSSCGGGEEEECSCHHHH-HHHHHHH------------CCEECSCHHHHHHHCSEEE
T ss_pred             CeEEEECccHHHHHHHHHH-HhCCCCCCCeEEEEeCCHHHH-HHHHHHh------------CCEEeCChHHHHHhCCEEE
Confidence            5899999999999999998 46687    999999987542 2222111            1223468899999999999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      +|+|. .....++ ++....+++|.++|.+.-|  +..+.|.+.+..
T Consensus        69 lav~~-~~~~~v~-~~l~~~l~~~~~vvs~~~g--i~~~~l~~~~~~  111 (247)
T 3gt0_A           69 LSIKP-DLYASII-NEIKEIIKNDAIIVTIAAG--KSIESTENAFNK  111 (247)
T ss_dssp             ECSCT-TTHHHHC----CCSSCTTCEEEECSCC--SCHHHHHHHHCS
T ss_pred             EEeCH-HHHHHHH-HHHHhhcCCCCEEEEecCC--CCHHHHHHHhCC
Confidence            99973 3444444 3445567899999977655  345667666643

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=98.50  E-value=1.4e-07  Score=87.16  Aligned_cols=92  Identities=18%  Similarity=0.294  Sum_probs=68.0

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      ++|||||+ |+||+.+|+.| ...|.+|++||++++.. +...+        .+.     . ..+..+++++||+|++|+
T Consensus        12 m~I~iIG~tG~mG~~la~~l-~~~g~~V~~~~r~~~~~-~~~~~--------~g~-----~-~~~~~~~~~~aDvVi~av   75 (286)
T 3c24_A           12 KTVAILGAGGKMGARITRKI-HDSAHHLAAIEIAPEGR-DRLQG--------MGI-----P-LTDGDGWIDEADVVVLAL   75 (286)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHSSSEEEEECCSHHHH-HHHHH--------TTC-----C-CCCSSGGGGTCSEEEECS
T ss_pred             CEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHh--------cCC-----C-cCCHHHHhcCCCEEEEcC
Confidence            58999999 99999999998 57789999999986542 22111        111     1 135667889999999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      |.. .+..++ ++....+++|+++|+++.|.
T Consensus        76 ~~~-~~~~v~-~~l~~~l~~~~ivv~~s~~~  104 (286)
T 3c24_A           76 PDN-IIEKVA-EDIVPRVRPGTIVLILDAAA  104 (286)
T ss_dssp             CHH-HHHHHH-HHHGGGSCTTCEEEESCSHH
T ss_pred             Cch-HHHHHH-HHHHHhCCCCCEEEECCCCc
Confidence            953 345555 34556688999999998876

>2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A*

Probab=98.46  E-value=7.5e-07  Score=83.82  Aligned_cols=107  Identities=20%  Similarity=0.283  Sum_probs=74.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCch-hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg----~~V~~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      ...+|||||+|+||..+|+.|+ .-|    .+|.+||++++ .+.+... .+       +     .....+..+++.+||
T Consensus        21 ~~mkI~iIG~G~mG~ala~~L~-~~G~~~~~~V~v~~r~~~~~~~~~l~-~~-------G-----~~~~~~~~e~~~~aD   86 (322)
T 2izz_A           21 QSMSVGFIGAGQLAFALAKGFT-AAGVLAAHKIMASSPDMDLATVSALR-KM-------G-----VKLTPHNKETVQHSD   86 (322)
T ss_dssp             -CCCEEEESCSHHHHHHHHHHH-HTTSSCGGGEEEECSCTTSHHHHHHH-HH-------T-----CEEESCHHHHHHHCS
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-HCCCCCcceEEEECCCccHHHHHHHH-Hc-------C-----CEEeCChHHHhccCC
Confidence            3458999999999999999984 557    78999999874 2222221 11       1     222357888999999


Q ss_pred             EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      +|++|+| ......++. +....++++.++|+++-|-  ..+.|.+.+.+
T Consensus        87 vVilav~-~~~~~~vl~-~l~~~l~~~~ivvs~s~gi--~~~~l~~~l~~  132 (322)
T 2izz_A           87 VLFLAVK-PHIIPFILD-EIGADIEDRHIVVSCAAGV--TISSIEKKLSA  132 (322)
T ss_dssp             EEEECSC-GGGHHHHHH-HHGGGCCTTCEEEECCTTC--CHHHHHHHHHT
T ss_pred             EEEEEeC-HHHHHHHHH-HHHhhcCCCCEEEEeCCCC--CHHHHHHHHhh
Confidence            9999999 455555553 3445678899999987664  34566666654

>3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii}

Probab=98.43  E-value=1.1e-06  Score=81.29  Aligned_cols=106  Identities=10%  Similarity=0.087  Sum_probs=74.4

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc---EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .++|||||+|+||..+|+.|+ .-|.   +|.+||++++.. +...+.+            +.....+..+++++||+|+
T Consensus         3 ~~~I~iIG~G~mG~aia~~l~-~~g~~~~~V~v~dr~~~~~-~~l~~~~------------gi~~~~~~~~~~~~aDvVi   68 (280)
T 3tri_A            3 TSNITFIGGGNMARNIVVGLI-ANGYDPNRICVTNRSLDKL-DFFKEKC------------GVHTTQDNRQGALNADVVV   68 (280)
T ss_dssp             CSCEEEESCSHHHHHHHHHHH-HTTCCGGGEEEECSSSHHH-HHHHHTT------------CCEEESCHHHHHSSCSEEE
T ss_pred             CCEEEEEcccHHHHHHHHHHH-HCCCCCCeEEEEeCCHHHH-HHHHHHc------------CCEEeCChHHHHhcCCeEE
Confidence            468999999999999999974 5566   899999987643 2222111            1223468889999999999


Q ss_pred             EcCCCCcccccccCHHHHhc-CCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          242 LHPVLDKTTYHLINKERLAT-MKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~-mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      +|+|. .....++. +.-.. ++++.++|+++-|-  ..+.|.+.+..
T Consensus        69 lav~p-~~~~~vl~-~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~  112 (280)
T 3tri_A           69 LAVKP-HQIKMVCE-ELKDILSETKILVISLAVGV--TTPLIEKWLGK  112 (280)
T ss_dssp             ECSCG-GGHHHHHH-HHHHHHHTTTCEEEECCTTC--CHHHHHHHHTC
T ss_pred             EEeCH-HHHHHHHH-HHHhhccCCCeEEEEecCCC--CHHHHHHHcCC
Confidence            99973 33344443 23334 67888999887654  45678787764

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=98.41  E-value=1.1e-06  Score=81.78  Aligned_cols=130  Identities=13%  Similarity=0.151  Sum_probs=80.0

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH--Hh-hhhhhhhccCCCC-------------ccccccCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--VT-AYGQFLKANGEQP-------------VTWKRASS  229 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~--~~-~~~~~~~~~~~~~-------------~~~~~~~~  229 (342)
                      ++|+|||.|.||..+|..|+ ..|.+|++||++++......  .. .+... ...+...             .......+
T Consensus        16 ~~I~VIG~G~mG~~iA~~la-~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~-~~~g~~~~~~~~~~~~~~~~~~i~~~~~   93 (302)
T 1f0y_A           16 KHVTVIGGGLMGAGIAQVAA-ATGHTVVLVDQTEDILAKSKKGIEESLRKV-AKKKFAENPKAGDEFVEKTLSTIATSTD   93 (302)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHHHHH-HHTTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHHHH-HHcCCCCccccchhhHHHHHhceEEecC
Confidence            68999999999999999985 56999999999875432110  00 00000 0111100             01223467


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 019387          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (342)
Q Consensus       230 l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~  300 (342)
                      +++.+++||+|++++|.+.+.+.-+-++....++++++++..+-|  +....+.+.+.. .-..++...+.
T Consensus        94 ~~~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~--i~~~~l~~~~~~-~~~~~g~h~~~  161 (302)
T 1f0y_A           94 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTR-QDRFAGLHFFN  161 (302)
T ss_dssp             HHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEEECS
T ss_pred             HHHhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCC--CCHHHHHHhcCC-cccEEEEecCC
Confidence            888899999999999966544433334445567889999855444  344556655532 12345666554

>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2

Probab=98.39  E-value=9.3e-07  Score=81.61  Aligned_cols=169  Identities=15%  Similarity=0.146  Sum_probs=107.1

Q ss_pred             HHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHHHH-HHhhccCCceEEEccccCCccChhH
Q 019387           33 LIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDVNA  104 (342)
Q Consensus        33 l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e~l-~~l~~l~~k~i~~~~~G~d~id~~~  104 (342)
                      .++.|.+.+....++ ..+++|+.+.+.     .+.++|+++.+  ..++++.+ +...         +.--+|.+--..
T Consensus        58 ~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~id~~~i~~~I~---------p~KDVDG~~p~n  127 (288)
T 1b0a_A           58 CEEVGFVSRSYDLPE-TTSEAELLELIDTLNADNTIDGILVQLPLPAGIDNVKVLERIH---------PDKDVDGFHPYN  127 (288)
T ss_dssp             HHHHTCEECCEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHTTSC---------TTTCTTCCSHHH
T ss_pred             HHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCHHHHHhccC---------CccCcccCCccc
Confidence            445666665443333 357888877662     25799999863  34444432 2211         111234332111


Q ss_pred             HHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHHHH
Q 019387          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYARM  183 (342)
Q Consensus       105 ~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA~~  183 (342)
                         .|-.+.+.++ ....+++-++.+    +++                     .+.+++|+++.|||.|+ +|+.+|+.
T Consensus       128 ---~g~l~~g~~~-~~PcTp~gi~~l----l~~---------------------~~i~l~gk~vvVIG~s~iVG~p~A~l  178 (288)
T 1b0a_A          128 ---VGRLCQRAPR-LRPCTPRGIVTL----LER---------------------YNIDTFGLNAVVIGASNIVGRPMSME  178 (288)
T ss_dssp             ---HHHHHTTCCS-SCCHHHHHHHHH----HHH---------------------TTCCCTTCEEEEECCCTTTHHHHHHH
T ss_pred             ---hhHHhCCCCC-CCCCcHHHHHHH----HHH---------------------cCCCCCCCEEEEECCChHHHHHHHHH
Confidence               1111222233 455666663322    221                     13578999999999997 59999999


Q ss_pred             HHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCC
Q 019387          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (342)
Q Consensus       184 l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk  263 (342)
                      | ...|++|+..+++.                            .++.+.+++||+|+.+++.    .++|..+.   +|
T Consensus       179 L-~~~gAtVtv~hs~t----------------------------~~L~~~~~~ADIVI~Avg~----p~lI~~~~---vk  222 (288)
T 1b0a_A          179 L-LLAGCTTTVTHRFT----------------------------KNLRHHVENADLLIVAVGK----PGFIPGDW---IK  222 (288)
T ss_dssp             H-HTTTCEEEEECSSC----------------------------SCHHHHHHHCSEEEECSCC----TTCBCTTT---SC
T ss_pred             H-HHCCCeEEEEeCCc----------------------------hhHHHHhccCCEEEECCCC----cCcCCHHH---cC
Confidence            7 68999999886432                            4789999999999999983    34787765   48


Q ss_pred             CCcEEEEcCCCcc
Q 019387          264 KEAILVNCSRGPV  276 (342)
Q Consensus       264 ~ga~lINvaRG~~  276 (342)
                      +|+++||+|.-.+
T Consensus       223 ~GavVIDVgi~r~  235 (288)
T 1b0a_A          223 EGAIVIDVGINRL  235 (288)
T ss_dssp             TTCEEEECCCEEC
T ss_pred             CCcEEEEccCCcc
Confidence            9999999997653

>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}

Probab=98.36  E-value=1.2e-06  Score=80.78  Aligned_cols=172  Identities=15%  Similarity=0.192  Sum_probs=109.0

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+.     .+.++++++.+  ..++++ +++...-.         --+|.+--
T Consensus        56 k~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~---------KDVDg~~~  125 (285)
T 3p2o_A           56 KACEECGIKSLVYHLNE-NITQNELLALINTLNHDDSVHGILVQLPLPDHICKDLILESIISS---------KDVDGFHP  125 (285)
T ss_dssp             HHHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG---------GCTTCCSH
T ss_pred             HHHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCCEEEecCCCCCCcCHHHHHhhCCcc---------cccccCCH
Confidence            34455677776554433 357888877662     25789999864  345544 33333211         12333321


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA  181 (342)
                      -   ..|-...+.++.....++.-++-    ++++                     .+.+++||++.|||.|. +|+.+|
T Consensus       126 ~---N~g~l~~g~~~g~~PcTp~gv~~----lL~~---------------------~~i~l~Gk~vvVvGrs~iVG~p~A  177 (285)
T 3p2o_A          126 I---NVGYLNLGLESGFLPCTPLGVMK----LLKA---------------------YEIDLEGKDAVIIGASNIVGRPMA  177 (285)
T ss_dssp             H---HHHHHHTTCCSSCCCHHHHHHHH----HHHH---------------------TTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             h---hhhhhhcCCCCCCCCCCHHHHHH----HHHH---------------------hCCCCCCCEEEEECCCchHHHHHH
Confidence            0   01111112232134455555542    2221                     13578999999999998 699999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      ..| ...|++|+..+++.                            .++++.+++||+|+.+++.    .++|..+.   
T Consensus       178 ~lL-~~~gAtVtv~h~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---  221 (285)
T 3p2o_A          178 TML-LNAGATVSVCHIKT----------------------------KDLSLYTRQADLIIVAAGC----VNLLRSDM---  221 (285)
T ss_dssp             HHH-HHTTCEEEEECTTC----------------------------SCHHHHHTTCSEEEECSSC----TTCBCGGG---
T ss_pred             HHH-HHCCCeEEEEeCCc----------------------------hhHHHHhhcCCEEEECCCC----CCcCCHHH---
Confidence            997 68899999886531                            4788999999999999983    45787754   


Q ss_pred             CCCCcEEEEcCCCcc
Q 019387          262 MKKEAILVNCSRGPV  276 (342)
Q Consensus       262 mk~ga~lINvaRG~~  276 (342)
                      +|+|+++||++.-.+
T Consensus       222 vk~GavVIDVgi~~~  236 (285)
T 3p2o_A          222 VKEGVIVVDVGINRL  236 (285)
T ss_dssp             SCTTEEEEECCCEEC
T ss_pred             cCCCeEEEEeccCcc
Confidence            599999999986553

>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A

Probab=98.36  E-value=1.2e-06  Score=80.36  Aligned_cols=166  Identities=10%  Similarity=0.118  Sum_probs=105.3

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHHHH-HHhhccCCceEEEccccCCccChh
Q 019387           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETLF-AALSRAGGKAFSNMAVGYNNVDVN  103 (342)
Q Consensus        32 ~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e~l-~~l~~l~~k~i~~~~~G~d~id~~  103 (342)
                      ..++.|. .+....++ ..+++|+.+.+.     .+.++|+++.+  ..++++.+ +...         +.--+|.+---
T Consensus        51 ~~~~~Gi-~~~~~lp~-~~s~~ell~~I~~lN~D~~v~GIlvqlPLP~~id~~~v~~~I~---------p~KDVDG~~p~  119 (276)
T 3ngx_A           51 RGKKIGI-AVDLEKYD-DISMKDLLKRIDDLAKDPQINGIMIENPLPKGFDYYEIVRNIP---------YYKDVDALSPY  119 (276)
T ss_dssp             HHHHHTC-EEEEEEES-SCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTCCHHHHHTTSC---------GGGBTTCCSHH
T ss_pred             HHHHCCe-EEEEECCC-CCCHHHHHHHHHHHcCCCCCcEEEEeCCCCCCCCHHHHHhhCC---------CCCcccCCCcc
Confidence            3445666 55444333 357888877762     25799999864  34555433 2211         11223333211


Q ss_pred             HHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHHHH
Q 019387          104 AANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAYAR  182 (342)
Q Consensus       104 ~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~vA~  182 (342)
                         ..|-.+.+.++ ....++.-++-+    +++                     .+  ++||++.|||.|. +|+.+|+
T Consensus       120 ---n~G~l~~g~~~-~~PcTp~gv~~l----L~~---------------------~~--l~Gk~vvVvG~s~iVG~plA~  168 (276)
T 3ngx_A          120 ---NQGLIALNREF-LVPATPRAVIDI----MDY---------------------YG--YHENTVTIVNRSPVVGRPLSM  168 (276)
T ss_dssp             ---HHHHHHTTCCS-SCCHHHHHHHHH----HHH---------------------HT--CCSCEEEEECCCTTTHHHHHH
T ss_pred             ---chhhhhcCCCC-CCCCcHHHHHHH----HHH---------------------hC--cCCCEEEEEcCChHHHHHHHH
Confidence               11111222333 344555555422    211                     12  7899999999997 7999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcC
Q 019387          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATM  262 (342)
Q Consensus       183 ~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~m  262 (342)
                      .| .+.|++|++++++.                            .++++.+++||+|+.+++.    .++|..+.   +
T Consensus       169 lL-~~~gAtVtv~~~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~---v  212 (276)
T 3ngx_A          169 ML-LNRNYTVSVCHSKT----------------------------KDIGSMTRSSKIVVVAVGR----PGFLNREM---V  212 (276)
T ss_dssp             HH-HHTTCEEEEECTTC----------------------------SCHHHHHHHSSEEEECSSC----TTCBCGGG---C
T ss_pred             HH-HHCCCeEEEEeCCc----------------------------ccHHHhhccCCEEEECCCC----CccccHhh---c
Confidence            97 68899999886531                            4789999999999999984    34787765   5


Q ss_pred             CCCcEEEEcCCCc
Q 019387          263 KKEAILVNCSRGP  275 (342)
Q Consensus       263 k~ga~lINvaRG~  275 (342)
                      |+|+++||++.-.
T Consensus       213 k~GavVIDvgi~~  225 (276)
T 3ngx_A          213 TPGSVVIDVGINY  225 (276)
T ss_dssp             CTTCEEEECCCEE
T ss_pred             cCCcEEEEeccCc
Confidence            9999999998654

>2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A*

Probab=98.35  E-value=1.7e-05  Score=76.31  Aligned_cols=83  Identities=29%  Similarity=0.467  Sum_probs=69.0

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCc---EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      ..-+|.|+|. |..|+..++.+ +++|+   .|.++|.++..+               +         ..+++ +.++|+
T Consensus       213 ~~~kV~ViG~~G~vG~~A~~~a-~~lGa~~~~V~v~D~~~~~~---------------g---------~~~~~-i~~aDi  266 (394)
T 2qrj_A          213 RKPTVLIIGALGRCGSGAIDLL-HKVGIPDANILKWDIKETSR---------------G---------GPFDE-IPQADI  266 (394)
T ss_dssp             CCCCEEEETTTSHHHHHHHHHH-HHTTCCGGGEEEECHHHHTT---------------C---------SCCTH-HHHSSE
T ss_pred             CCCeEEEEcCCCHHHHHHHHHH-HhCCCCcCceEEeecccccc---------------C---------Cchhh-HhhCCE
Confidence            3568999999 99999999995 89998   899999765221               1         11233 568999


Q ss_pred             EEEcCCCCcccccccCHHHHhcC-CCCcEEEEcC
Q 019387          240 ISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~m-k~ga~lINva  272 (342)
                      |+.|+........+|+++.++.| |+|+++||++
T Consensus       267 vIn~vlig~~aP~Lvt~e~v~~m~k~gsVIVDVA  300 (394)
T 2qrj_A          267 FINCIYLSKPIAPFTNMEKLNNPNRRLRTVVDVS  300 (394)
T ss_dssp             EEECCCCCSSCCCSCCHHHHCCTTCCCCEEEETT
T ss_pred             EEECcCcCCCCCcccCHHHHhcCcCCCeEEEEEe
Confidence            99999987778899999999999 9999999996

>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}

Probab=98.35  E-value=1.4e-06  Score=80.40  Aligned_cols=170  Identities=13%  Similarity=0.194  Sum_probs=107.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+.     .+.++++++.+  ..++++ +++...-.  |       -+|.+--
T Consensus        57 k~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlvqlPlp~~id~~~v~~~I~p~--K-------DVDG~~~  126 (285)
T 3l07_A           57 KACAQVGIDSQVITLPE-HTTESELLELIDQLNNDSSVHAILVQLPLPAHINKNNVIYSIKPE--K-------DVDGFHP  126 (285)
T ss_dssp             HHHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCGG--G-------BTTCCSH
T ss_pred             HHHHHcCCeEEEEECCC-CCCHHHHHHHHHHHhCCCCCcEEEEcCCCCCCcCHHHHHhhCCcc--c-------ccccCCh
Confidence            34456677776554433 357888877662     25789999864  345544 33333211  1       2333321


Q ss_pred             hHHHhCCeeEecC-CCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHHH
Q 019387          103 NAANKYGIAVGNT-PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSAY  180 (342)
Q Consensus       103 ~~~~~~gI~V~n~-~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~v  180 (342)
                      -   ..|-...+. ++ ....++.-++-    ++++                     .+.+++||++.|||.|. +|+.+
T Consensus       127 ~---N~G~l~~g~~~~-~~PcTp~gv~~----lL~~---------------------~~i~l~Gk~vvVIG~s~iVG~p~  177 (285)
T 3l07_A          127 T---NVGRLQLRDKKC-LESCTPKGIMT----MLRE---------------------YGIKTEGAYAVVVGASNVVGKPV  177 (285)
T ss_dssp             H---HHHHHHHTCTTC-CCCHHHHHHHH----HHHH---------------------TTCCCTTCEEEEECCCTTTHHHH
T ss_pred             h---heeehhcCCCCC-CCCCCHHHHHH----HHHH---------------------hCCCCCCCEEEEECCCchhHHHH
Confidence            0   011111112 32 34455655552    2221                     13579999999999998 69999


Q ss_pred             HHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387          181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       181 A~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~  260 (342)
                      |..| ...|++|+..+++                            ..++++.+++||+|+.+++.    .++|..+.  
T Consensus       178 A~lL-~~~gAtVtv~hs~----------------------------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~--  222 (285)
T 3l07_A          178 SQLL-LNAKATVTTCHRF----------------------------TTDLKSHTTKADILIVAVGK----PNFITADM--  222 (285)
T ss_dssp             HHHH-HHTTCEEEEECTT----------------------------CSSHHHHHTTCSEEEECCCC----TTCBCGGG--
T ss_pred             HHHH-HHCCCeEEEEeCC----------------------------chhHHHhcccCCEEEECCCC----CCCCCHHH--
Confidence            9997 6889999987643                            14788999999999999983    45687754  


Q ss_pred             cCCCCcEEEEcCCCc
Q 019387          261 TMKKEAILVNCSRGP  275 (342)
Q Consensus       261 ~mk~ga~lINvaRG~  275 (342)
                       +|+|+++||++.-.
T Consensus       223 -vk~GavVIDvgi~~  236 (285)
T 3l07_A          223 -VKEGAVVIDVGINH  236 (285)
T ss_dssp             -SCTTCEEEECCCEE
T ss_pred             -cCCCcEEEEecccC
Confidence             59999999998654

>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A

Probab=98.35  E-value=1.5e-06  Score=79.85  Aligned_cols=172  Identities=18%  Similarity=0.190  Sum_probs=110.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+.     .+.++|+++.+  ..++++ +++...-.  |       -+|.+--
T Consensus        55 k~~~~~Gi~~~~~~lp~-~~s~~ell~~i~~lN~D~~v~GIlvqlPlP~~id~~~i~~~I~p~--K-------DVDG~~p  124 (281)
T 2c2x_A           55 ADCAKVGITSIRRDLPA-DISTATLNETIDELNANPDCTGYIVQLPLPKHLDENAALERVDPA--K-------DADGLHP  124 (281)
T ss_dssp             HHHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSCCCTTSCHHHHHHHSCGG--G-------BTTSCCH
T ss_pred             HHHHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCCHHHHHhhcCcc--C-------CccCCCh
Confidence            33455677776655443 357888877662     25799999864  344444 33332111  1       3444321


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHH-HHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~I-G~~vA  181 (342)
                      ..   .|-.+.+.++ +...+++.++-++    ++                     .+.++.||++.|||.|.| |+.+|
T Consensus       125 ~n---~g~l~~g~~~-~~PcTp~gi~~ll----~~---------------------~~i~l~gk~vvVvG~s~iVG~p~A  175 (281)
T 2c2x_A          125 TN---LGRLVLGTPA-PLPCTPRGIVHLL----RR---------------------YDISIAGAHVVVIGRGVTVGRPLG  175 (281)
T ss_dssp             HH---HHHHHHTCCC-CCCHHHHHHHHHH----HH---------------------TTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             hh---HHHHhCCCCC-CCCChHHHHHHHH----HH---------------------cCCCCCCCEEEEECCCcHHHHHHH
Confidence            11   1111222233 4556666544322    21                     135789999999999986 99999


Q ss_pred             HHHHhcC--CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHH
Q 019387          182 RMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERL  259 (342)
Q Consensus       182 ~~l~~af--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l  259 (342)
                      +.| ...  |++|+..+++.                            .++.+.+++||+|+.+++.    .++|..+. 
T Consensus       176 ~lL-~~~g~~atVtv~h~~t----------------------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~-  221 (281)
T 2c2x_A          176 LLL-TRRSENATVTLCHTGT----------------------------RDLPALTRQADIVVAAVGV----AHLLTADM-  221 (281)
T ss_dssp             HHH-TSTTTCCEEEEECTTC----------------------------SCHHHHHTTCSEEEECSCC----TTCBCGGG-
T ss_pred             HHH-hcCCCCCEEEEEECch----------------------------hHHHHHHhhCCEEEECCCC----CcccCHHH-
Confidence            997 677  89999886432                            4789999999999999983    34688776 


Q ss_pred             hcCCCCcEEEEcCCCccc
Q 019387          260 ATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       260 ~~mk~ga~lINvaRG~~v  277 (342)
                        +|+|+++||+|.-.+-
T Consensus       222 --vk~GavVIDVgi~r~~  237 (281)
T 2c2x_A          222 --VRPGAAVIDVGVSRTD  237 (281)
T ss_dssp             --SCTTCEEEECCEEEET
T ss_pred             --cCCCcEEEEccCCCCC
Confidence              4899999999976543

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=98.35  E-value=2.1e-06  Score=84.58  Aligned_cols=119  Identities=15%  Similarity=0.186  Sum_probs=77.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCC--------CccccccCCHHHHhhcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~ll~~a  237 (342)
                      .+|+|||+|.||..+|..|+ ..|.+|++||++++. .+.......... ..+..        ........++++++++|
T Consensus         3 mkI~VIG~G~vG~~lA~~La-~~G~~V~~~D~~~~~-v~~l~~g~~~i~-e~gl~~~l~~~~~~~~l~~t~d~~ea~~~a   79 (450)
T 3gg2_A            3 LDIAVVGIGYVGLVSATCFA-ELGANVRCIDTDRNK-IEQLNSGTIPIY-EPGLEKMIARNVKAGRLRFGTEIEQAVPEA   79 (450)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHH-HHHHHHTCSCCC-STTHHHHHHHHHHTTSEEEESCHHHHGGGC
T ss_pred             CEEEEECcCHHHHHHHHHHH-hcCCEEEEEECCHHH-HHHHHcCCCccc-CCCHHHHHHhhcccCcEEEECCHHHHHhcC
Confidence            48999999999999999985 569999999998753 222221100000 00000        01122346889999999


Q ss_pred             CEEEEcCCCCcc---------cccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          238 DVISLHPVLDKT---------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       238 DiV~l~~pl~~~---------t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      |+|++|+|...+         .+..+ +.....+++|.++|+.+.-..=..+.+.+.+++
T Consensus        80 DvViiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~  138 (450)
T 3gg2_A           80 DIIFIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE  138 (450)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence            999999996532         22222 345667899999999986544445566666654

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=98.34  E-value=1.4e-06  Score=85.46  Aligned_cols=119  Identities=10%  Similarity=0.099  Sum_probs=77.4

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCC--------CccccccCCHHHHhhcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLREAD  238 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~ll~~aD  238 (342)
                      +|+|||+|.||..+|..|+ ..|.+|++||++++.. +........ +...+..        .-......++++.+++||
T Consensus         2 kI~VIG~G~vG~~~A~~la-~~G~~V~~~d~~~~~~-~~l~~~~~~-i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aD   78 (436)
T 1mv8_A            2 RISIFGLGYVGAVCAGCLS-ARGHEVIGVDVSSTKI-DLINQGKSP-IVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSD   78 (436)
T ss_dssp             EEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHTTCCS-SCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCS
T ss_pred             EEEEECCCHHHHHHHHHHH-HCCCEEEEEECCHHHH-HHHhCCCCC-cCCCCHHHHHHhhcccCceEEeCCHHHHhccCC
Confidence            7999999999999999985 6799999999987542 222110000 0000000        001223467888899999


Q ss_pred             EEEEcCCCCcccccccC--------HHHHhcCCC---CcEEEEcCCCcccC-HHHHHHHHHc
Q 019387          239 VISLHPVLDKTTYHLIN--------KERLATMKK---EAILVNCSRGPVID-EVALVEHLKQ  288 (342)
Q Consensus       239 iV~l~~pl~~~t~~li~--------~~~l~~mk~---ga~lINvaRG~~vd-~~aL~~aL~~  288 (342)
                      +|++|+|...+..+..|        +.....+++   |.++|+.+...+-. .+.+.+.+++
T Consensus        79 vviiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~  140 (436)
T 1mv8_A           79 VSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED  140 (436)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred             EEEEEcCCCcccCCCcchHHHHHHHHHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence            99999996554333322        334456788   99999998666544 5667777765

>1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A*

Probab=98.34  E-value=5.4e-07  Score=81.78  Aligned_cols=101  Identities=18%  Similarity=0.213  Sum_probs=68.3

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|||||+|+||+.+|+.|+ ..| .+|.+||++++.. +...+.+       +     .....++++++ ++|+|++|+|
T Consensus         2 ~i~iiG~G~mG~~~a~~l~-~~g~~~v~~~~r~~~~~-~~~~~~~-------g-----~~~~~~~~~~~-~~D~vi~~v~   66 (263)
T 1yqg_A            2 NVYFLGGGNMAAAVAGGLV-KQGGYRIYIANRGAEKR-ERLEKEL-------G-----VETSATLPELH-SDDVLILAVK   66 (263)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HHCSCEEEEECSSHHHH-HHHHHHT-------C-----CEEESSCCCCC-TTSEEEECSC
T ss_pred             EEEEECchHHHHHHHHHHH-HCCCCeEEEECCCHHHH-HHHHHhc-------C-----CEEeCCHHHHh-cCCEEEEEeC
Confidence            7999999999999999984 568 8999999987542 2221111       1     11234566777 8999999999


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                       ......++..  +.. + +.++|+++-|--  .+.|.+.+..+
T Consensus        67 -~~~~~~v~~~--l~~-~-~~ivv~~~~g~~--~~~l~~~~~~~  103 (263)
T 1yqg_A           67 -PQDMEAACKN--IRT-N-GALVLSVAAGLS--VGTLSRYLGGT  103 (263)
T ss_dssp             -HHHHHHHHTT--CCC-T-TCEEEECCTTCC--HHHHHHHTTSC
T ss_pred             -chhHHHHHHH--hcc-C-CCEEEEecCCCC--HHHHHHHcCCC
Confidence             4554444431  222 4 899999865543  36677777653

>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*

Probab=98.33  E-value=1.9e-06  Score=80.02  Aligned_cols=171  Identities=13%  Similarity=0.192  Sum_probs=108.4

Q ss_pred             HHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCCC--C--ccHHHH-HHhhccCCceEEEccccCCccC
Q 019387           32 LLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLTE--D--WGETLF-AALSRAGGKAFSNMAVGYNNVD  101 (342)
Q Consensus        32 ~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~~--~--~~~e~l-~~l~~l~~k~i~~~~~G~d~id  101 (342)
                      ..++.|.+.+....++ ..+++|+.+.+.     .+.++|+++.+-  .  ++++.+ +...-         .--+|.+-
T Consensus        59 ~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~D~~V~GIlvqlPLP~~~~id~~~i~~~I~p---------~KDVDG~h  128 (301)
T 1a4i_A           59 AAEEIGIKATHIKLPR-TTTESEVMKYITSLNEDSTVHGFLVQLPLDSENSINTEEVINAIAP---------EKDVDGLT  128 (301)
T ss_dssp             HHHHHTCEEEEEEECT-TCCHHHHHHHHHHHHHCTTCCEEEECSSCCCSSCCCHHHHHHTSCG---------GGBTTCCS
T ss_pred             HHHHcCCEEEEEECCC-CCCHHHHHHHHHHhcCCCCCcEEEEeccCCCCCccCHHHHHhccCC---------CCCccCCC
Confidence            3455677776655443 357888877663     257999998642  3  555433 32211         11334432


Q ss_pred             hhHHHhCCeeEecC--CCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHH
Q 019387          102 VNAANKYGIAVGNT--PGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGS  178 (342)
Q Consensus       102 ~~~~~~~gI~V~n~--~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~  178 (342)
                      -...   |-.+.+.  + .....+++-++    .++++                     .+.++.|+++.|||.|+ +|+
T Consensus       129 p~N~---G~l~~g~~~~-~~~PcTp~gi~----~ll~~---------------------~~i~l~gk~vvVIG~s~iVG~  179 (301)
T 1a4i_A          129 SINA---GRLARGDLND-CFIPCTPKGCL----ELIKE---------------------TGVPIAGRHAVVVGRSKIVGA  179 (301)
T ss_dssp             HHHH---HHHHTTCCSS-CCCCHHHHHHH----HHHHT---------------------TTCCCTTCEEEEECCCTTTHH
T ss_pred             hhhH---HHHhcCCCCC-CccCchHHHHH----HHHHH---------------------cCCCCCCCEEEEECCCchHHH
Confidence            1111   1111111  2 24445565533    22222                     13579999999999997 699


Q ss_pred             HHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHH
Q 019387          179 AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (342)
Q Consensus       179 ~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~  258 (342)
                      .+|+.| ...|++|+..+++                            ..++.+.+++||+|+.+++.    .++|..+.
T Consensus       180 p~A~lL-~~~gAtVtv~hs~----------------------------t~~L~~~~~~ADIVI~Avg~----p~~I~~~~  226 (301)
T 1a4i_A          180 PMHDLL-LWNNATVTTCHSK----------------------------TAHLDEEVNKGDILVVATGQ----PEMVKGEW  226 (301)
T ss_dssp             HHHHHH-HHTTCEEEEECTT----------------------------CSSHHHHHTTCSEEEECCCC----TTCBCGGG
T ss_pred             HHHHHH-HhCCCeEEEEECC----------------------------cccHHHHhccCCEEEECCCC----cccCCHHH
Confidence            999997 6899999988643                            24789999999999999985    34788776


Q ss_pred             HhcCCCCcEEEEcCCCccc
Q 019387          259 LATMKKEAILVNCSRGPVI  277 (342)
Q Consensus       259 l~~mk~ga~lINvaRG~~v  277 (342)
                         +|+|+++||+|.-.+-
T Consensus       227 ---vk~GavVIDVgi~~~~  242 (301)
T 1a4i_A          227 ---IKPGAIVIDCGINYVP  242 (301)
T ss_dssp             ---SCTTCEEEECCCBC--
T ss_pred             ---cCCCcEEEEccCCCcc
Confidence               5799999999986543

>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}

Probab=98.32  E-value=1.5e-06  Score=80.75  Aligned_cols=171  Identities=20%  Similarity=0.211  Sum_probs=108.6

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHH-HHHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGET-LFAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e-~l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +..++.|.+.+....++ ..+++|+.+.+.     .+.++++++.+  ..++++ +++...-         .--+|.+--
T Consensus        60 k~~~~~Gi~~~~~~lp~-~~s~~ell~~I~~lN~d~~v~GIlVqlPLP~~id~~~v~~~I~p---------~KDVDG~~~  129 (300)
T 4a26_A           60 KAAAEVGMASFNVELPE-DISQEVLEVNVEKLNNDPNCHGIIVQLPLPKHLNENRAIEKIHP---------HKDADALLP  129 (300)
T ss_dssp             HHHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSCCCTTSCHHHHHHTSCG---------GGCTTCCSH
T ss_pred             HHHHHcCCeEEEEECCC-CCCHHHHHHHHHHhcCCCCCCEEEEcCCCCCCCCHHHHHhhCCc---------ccccccCCc
Confidence            44556787776655443 357888877662     25789999864  345544 3333221         112333321


Q ss_pred             hHHHhCCeeEec--CCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH-HHHH
Q 019387          103 NAANKYGIAVGN--TPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR-IGSA  179 (342)
Q Consensus       103 ~~~~~~gI~V~n--~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~-IG~~  179 (342)
                      -   ..|-...+  .++ ....+++-++-+    ++++                     +.+++||++.|||.|. +|+.
T Consensus       130 ~---N~G~l~~g~~~~~-~~PcTp~gv~~l----L~~~---------------------~i~l~Gk~vvVIG~s~iVG~p  180 (300)
T 4a26_A          130 V---NVGLLHYKGREPP-FTPCTAKGVIVL----LKRC---------------------GIEMAGKRAVVLGRSNIVGAP  180 (300)
T ss_dssp             H---HHHHHHCTTCCCS-CCCHHHHHHHHH----HHHH---------------------TCCCTTCEEEEECCCTTTHHH
T ss_pred             c---eEEEeecCCCcCC-CCCCCHHHHHHH----HHHc---------------------CCCCCCCEEEEECCCchHHHH
Confidence            0   11111111  122 345566655432    2211                     3578999999999998 6999


Q ss_pred             HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHH--HHhhcCCEEEEcCCCCcccccccCHH
Q 019387          180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD--EVLREADVISLHPVLDKTTYHLINKE  257 (342)
Q Consensus       180 vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~ll~~aDiV~l~~pl~~~t~~li~~~  257 (342)
                      +|..| ...|++|++++++.                            .+++  +.+++||+|+.++|.    .++|..+
T Consensus       181 ~A~lL-~~~gAtVtv~~~~T----------------------------~~l~l~~~~~~ADIVI~Avg~----p~~I~~~  227 (300)
T 4a26_A          181 VAALL-MKENATVTIVHSGT----------------------------STEDMIDYLRTADIVIAAMGQ----PGYVKGE  227 (300)
T ss_dssp             HHHHH-HHTTCEEEEECTTS----------------------------CHHHHHHHHHTCSEEEECSCC----TTCBCGG
T ss_pred             HHHHH-HHCCCeEEEEeCCC----------------------------CCchhhhhhccCCEEEECCCC----CCCCcHH
Confidence            99997 68899999987632                            2455  889999999999984    3578775


Q ss_pred             HHhcCCCCcEEEEcCCCcc
Q 019387          258 RLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       258 ~l~~mk~ga~lINvaRG~~  276 (342)
                      .   +|+|+++||++.-.+
T Consensus       228 ~---vk~GavVIDvgi~~~  243 (300)
T 4a26_A          228 W---IKEGAAVVDVGTTPV  243 (300)
T ss_dssp             G---SCTTCEEEECCCEEE
T ss_pred             h---cCCCcEEEEEeccCC
Confidence            5   599999999986544

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=98.31  E-value=3.1e-06  Score=83.30  Aligned_cols=119  Identities=14%  Similarity=0.192  Sum_probs=78.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCC--------CCccccccCCHHHHhhcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE--------QPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~l~~ll~~a  237 (342)
                      -+++|||+|.+|..+|..|+ ..|.+|++||+.++. .+........ +...+.        .+-.....+++++.+++|
T Consensus         9 ~~~~vIGlG~vG~~~A~~La-~~G~~V~~~D~~~~k-v~~l~~g~~~-~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~a   85 (446)
T 4a7p_A            9 VRIAMIGTGYVGLVSGACFS-DFGHEVVCVDKDARK-IELLHQNVMP-IYEPGLDALVASNVKAGRLSFTTDLAEGVKDA   85 (446)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCSTT-HHHHTTTCCS-SCCTTHHHHHHHHHHTTCEEEESCHHHHHTTC
T ss_pred             eEEEEEcCCHHHHHHHHHHH-HCCCEEEEEeCCHHH-HHHHhcCCCC-ccCCCHHHHHHhhcccCCEEEECCHHHHHhcC
Confidence            47999999999999999985 569999999998764 2222111000 000000        001123346888999999


Q ss_pred             CEEEEcCCCCcc----------cccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          238 DVISLHPVLDKT----------TYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       238 DiV~l~~pl~~~----------t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      |+|++|+|...+          .+..+ +.....+++|.++|+.+.-..=..+.+.+.+.+
T Consensus        86 Dvvii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e  145 (446)
T 4a7p_A           86 DAVFIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE  145 (446)
T ss_dssp             SEEEECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence            999999985432          12222 456678999999999986555556667776655

>3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli}

Probab=98.31  E-value=1.6e-06  Score=86.29  Aligned_cols=131  Identities=20%  Similarity=0.277  Sum_probs=84.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhh---hccCCCCc--------cccccCCHHHHh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFL---KANGEQPV--------TWKRASSMDEVL  234 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~---~~~~~~~~--------~~~~~~~l~~ll  234 (342)
                      ++|||||.|.||..+|..|+ ..|.+|++||++++.... ........+   ...+....        ......+++ .+
T Consensus         6 ~kVgVIGaG~MG~~IA~~la-~aG~~V~l~D~~~e~l~~-~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~   82 (483)
T 3mog_A            6 QTVAVIGSGTMGAGIAEVAA-SHGHQVLLYDISAEALTR-AIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-AL   82 (483)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHHH-HHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GG
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCeEEEEECCHHHHHH-HHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hh
Confidence            58999999999999999985 569999999998764322 111100000   01111100        112235665 57


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEE-EEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAIL-VNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~l-INvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      ++||+|+.++|.+.+.+.-+-++....++++++| .|+|.   +....|.+.+.. .-..+++..|.+-|
T Consensus        83 ~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSt---i~i~~ia~~~~~-p~~~ig~hf~~Pa~  148 (483)
T 3mog_A           83 AAADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSS---ISITAIAAEIKN-PERVAGLHFFNPAP  148 (483)
T ss_dssp             GGCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSS---SCHHHHTTTSSS-GGGEEEEEECSSTT
T ss_pred             cCCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCC---CCHHHHHHHccC-ccceEEeeecChhh
Confidence            8999999999977666544445566778999999 46664   444566666542 44567888777555

>1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A*

Probab=98.28  E-value=2.3e-06  Score=75.01  Aligned_cols=122  Identities=11%  Similarity=0.145  Sum_probs=80.3

Q ss_pred             eEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|+|+| .|.||+.+++.| ...|.+|.++|++++.. +...+.++....     ..... ..+++++++++|+|++|+|
T Consensus         2 ~i~iiGa~G~~G~~ia~~l-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~-----~~~~~-~~~~~~~~~~~D~Vi~~~~   73 (212)
T 1jay_A            2 RVALLGGTGNLGKGLALRL-ATLGHEIVVGSRREEKA-EAKAAEYRRIAG-----DASIT-GMKNEDAAEACDIAVLTIP   73 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HTTTCEEEEEESSHHHH-HHHHHHHHHHHS-----SCCEE-EEEHHHHHHHCSEEEECSC
T ss_pred             eEEEEcCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHhccccc-----cCCCC-hhhHHHHHhcCCEEEEeCC
Confidence            799999 999999999998 46789999999986532 222211111110     00111 2578888999999999998


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccC------------HHHHHHHHHcCCceEEEEecCCCCC
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVID------------EVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd------------~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      . ..++.++. +....++ +.++|+++.|--.+            .+.+.+.+..    ...++++.++|
T Consensus        74 ~-~~~~~~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~----~~~v~~~~~~~  136 (212)
T 1jay_A           74 W-EHAIDTAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLES----EKVVSALHTIP  136 (212)
T ss_dssp             H-HHHHHHHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTC----SCEEECCTTCC
T ss_pred             h-hhHHHHHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCC----CeEEEEccchH
Confidence            3 34444443 2223444 89999999876533            4667776653    24568887777

>3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii}

Probab=98.28  E-value=3.8e-06  Score=80.33  Aligned_cols=111  Identities=13%  Similarity=0.115  Sum_probs=72.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-hhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      ..+|+|||.|.||..+|..|+ .-|.+|.+|++.++.. +...+. ...........+.......++++.+++||+|+++
T Consensus        29 ~mkI~VIGaG~mG~alA~~La-~~G~~V~l~~r~~~~~-~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVila  106 (356)
T 3k96_A           29 KHPIAILGAGSWGTALALVLA-RKGQKVRLWSYESDHV-DEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIV  106 (356)
T ss_dssp             CSCEEEECCSHHHHHHHHHHH-TTTCCEEEECSCHHHH-HHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEEC
T ss_pred             CCeEEEECccHHHHHHHHHHH-HCCCeEEEEeCCHHHH-HHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEEC
Confidence            468999999999999999984 6789999999986532 221110 0000000000011223346888999999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCH
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      +|. ...+.++ ++....+++++++|+++-|-..++
T Consensus       107 Vp~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~~t  140 (356)
T 3k96_A          107 VPS-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAKGS  140 (356)
T ss_dssp             CCH-HHHHHHH-HHHGGGCCTTCEEEECCCSCBTTT
T ss_pred             CCH-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCcCc
Confidence            994 3444444 344566889999999988765553

>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6

Probab=98.27  E-value=2.6e-06  Score=80.60  Aligned_cols=118  Identities=14%  Similarity=0.155  Sum_probs=74.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCC-Cccc-cccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PVTW-KRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~l~~ll~~aDiV~l~  243 (342)
                      ++|+|||.|.||..+|..| ...|.+|.+||++++.. +...+..+..+...+.. .... ....+++++++.+|+|++|
T Consensus         5 mki~iiG~G~~G~~~a~~L-~~~g~~V~~~~r~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~   82 (359)
T 1bg6_A            5 KTYAVLGLGNGGHAFAAYL-ALKGQSVLAWDIDAQRI-KEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIV   82 (359)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEEC
T ss_pred             CeEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCHHHH-HHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEe
Confidence            5899999999999999998 46789999999986532 22211110000000000 0001 1246788888999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      +|... +..++ +.....+++|+++|+. -|.......+.+.+.+
T Consensus        83 v~~~~-~~~~~-~~l~~~l~~~~~vv~~-~~~~~~~~~~~~~l~~  124 (359)
T 1bg6_A           83 VPAIH-HASIA-ANIASYISEGQLIILN-PGATGGALEFRKILRE  124 (359)
T ss_dssp             SCGGG-HHHHH-HHHGGGCCTTCEEEES-SCCSSHHHHHHHHHHH
T ss_pred             CCchH-HHHHH-HHHHHhCCCCCEEEEc-CCCchHHHHHHHHHHh
Confidence            99643 34444 4455678999999998 4422344445565654

>1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A*

Probab=98.26  E-value=1.8e-06  Score=81.17  Aligned_cols=97  Identities=16%  Similarity=0.196  Sum_probs=69.8

Q ss_pred             ccccCCCeEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc------c--CCH
Q 019387          160 GNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR------A--SSM  230 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~I-G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--~~l  230 (342)
                      +.++.|+++.|||.|.| |+.+|+.| .+.|++|+++|++.....+.          ...... ..+.      .  .++
T Consensus       172 g~~l~gk~vvVIG~G~iVG~~~A~~L-~~~gAtVtv~nR~~~~l~~r----------a~~la~-~~~~~t~~~~t~~~~L  239 (320)
T 1edz_A          172 GNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTR----------GESLKL-NKHHVEDLGEYSEDLL  239 (320)
T ss_dssp             TCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEES----------CCCSSC-CCCEEEEEEECCHHHH
T ss_pred             CCCCCCCEEEEECCCcchHHHHHHHH-HHCCCEEEEEeCchHHHHhH----------HHHHhh-hcccccccccccHhHH
Confidence            56799999999999986 99999997 68899999998874321000          000000 0011      1  478


Q ss_pred             HHHhhcCCEEEEcCCCCcccccc-cCHHHHhcCCCCcEEEEcCCCc
Q 019387          231 DEVLREADVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       231 ~~ll~~aDiV~l~~pl~~~t~~l-i~~~~l~~mk~ga~lINvaRG~  275 (342)
                      ++.+++||+|+.+++.    .++ |..+.   +|+|+++||+|--.
T Consensus       240 ~e~l~~ADIVIsAtg~----p~~vI~~e~---vk~GavVIDVgi~r  278 (320)
T 1edz_A          240 KKCSLDSDVVITGVPS----ENYKFPTEY---IKEGAVCINFACTK  278 (320)
T ss_dssp             HHHHHHCSEEEECCCC----TTCCBCTTT---SCTTEEEEECSSSC
T ss_pred             HHHhccCCEEEECCCC----CcceeCHHH---cCCCeEEEEcCCCc
Confidence            9999999999999874    234 77765   58999999998654

>3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima}

Probab=98.25  E-value=6e-06  Score=75.23  Aligned_cols=105  Identities=16%  Similarity=0.165  Sum_probs=74.8

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +.| +++|+|.|.+|++++..| ...|+ +|.+++|++++. +...+            ........++++.++++|+|+
T Consensus       107 ~~~-~vliiGaGg~a~ai~~~L-~~~G~~~I~v~nR~~~ka-~~la~------------~~~~~~~~~~~~~~~~aDiVI  171 (253)
T 3u62_A          107 VKE-PVVVVGAGGAARAVIYAL-LQMGVKDIWVVNRTIERA-KALDF------------PVKIFSLDQLDEVVKKAKSLF  171 (253)
T ss_dssp             CCS-SEEEECCSHHHHHHHHHH-HHTTCCCEEEEESCHHHH-HTCCS------------SCEEEEGGGHHHHHHTCSEEE
T ss_pred             CCC-eEEEECcHHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHH------------HcccCCHHHHHhhhcCCCEEE
Confidence            578 999999999999999997 57898 899999987532 21110            011112357888899999999


Q ss_pred             EcCCCC--cccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          242 LHPVLD--KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       242 l~~pl~--~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      .++|..  ++ ...++.+.   ++++.+++++.-+   .+.-|.+|.+.|
T Consensus       172 natp~gm~p~-~~~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G  214 (253)
T 3u62_A          172 NTTSVGMKGE-ELPVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG  214 (253)
T ss_dssp             ECSSTTTTSC-CCSCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred             ECCCCCCCCC-CCCCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence            999864  22 23455444   5689999999988   555566666665

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=98.23  E-value=5.1e-06  Score=82.56  Aligned_cols=121  Identities=17%  Similarity=0.175  Sum_probs=76.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhc-CCcEEEEEcCCchhHHHHHHhhhhhhhhccCC-------CCccccccCCHHHHhhcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-------QPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~a-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~l~~ll~~a  237 (342)
                      .+|+|||+|.||..+|..|++. .|.+|++||++++.. +........ +...+.       .........++.+.+++|
T Consensus        10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v-~~l~~g~~~-i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~a   87 (481)
T 2o3j_A           10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKI-AEWNSDKLP-IYEPGLDEIVFAARGRNLFFSSDIPKAIAEA   87 (481)
T ss_dssp             CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHH-HHHTSSSCS-SCCTTHHHHHHHHBTTTEEEESCHHHHHHHC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHH-HHHHCCCCC-cCCCCHHHHHHHhhcCCEEEECCHHHHhhcC
Confidence            4899999999999999998654 378999999987532 222110000 000000       000122345777888999


Q ss_pred             CEEEEcCCCCcccc-----------ccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          238 DVISLHPVLDKTTY-----------HLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       238 DiV~l~~pl~~~t~-----------~li--~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      |+|++|+|......           .+.  -+.....+++|.++|+.+.-..=..+.+.+.+++
T Consensus        88 Dvvii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~  151 (481)
T 2o3j_A           88 DLIFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE  151 (481)
T ss_dssp             SEEEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred             CEEEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence            99999998643211           111  1345567899999999876555455667777776

>3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A*

Probab=98.23  E-value=3.4e-06  Score=77.87  Aligned_cols=108  Identities=14%  Similarity=0.127  Sum_probs=72.5

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|+++.|+|.|.+|++++..| ...|+ +|.+++|+.+.. +.       +.     .........++++.+.++|+|
T Consensus       114 ~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~a-~~-------la-----~~~~~~~~~~~~~~~~~aDiV  179 (277)
T 3don_A          114 GIEDAYILILGAGGASKGIANEL-YKIVRPTLTVANRTMSRF-NN-------WS-----LNINKINLSHAESHLDEFDII  179 (277)
T ss_dssp             TGGGCCEEEECCSHHHHHHHHHH-HTTCCSCCEEECSCGGGG-TT-------CC-----SCCEEECHHHHHHTGGGCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHHH-HH-------HH-----HhcccccHhhHHHHhcCCCEE
Confidence            57899999999999999999998 58898 899999987542 11       00     011111234567778899999


Q ss_pred             EEcCCCC--cccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          241 SLHPVLD--KTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       241 ~l~~pl~--~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      +.++|..  ++....++   .+.++++.+++++.-.+.. +. |.++.++
T Consensus       180 InaTp~Gm~~~~~~~l~---~~~l~~~~~V~D~vY~P~~-T~-ll~~A~~  224 (277)
T 3don_A          180 INTTPAGMNGNTDSVIS---LNRLASHTLVSDIVYNPYK-TP-ILIEAEQ  224 (277)
T ss_dssp             EECCC-------CCSSC---CTTCCSSCEEEESCCSSSS-CH-HHHHHHH
T ss_pred             EECccCCCCCCCcCCCC---HHHcCCCCEEEEecCCCCC-CH-HHHHHHH
Confidence            9999964  23222233   4668899999999877544 33 5544444

>2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum}

Probab=98.21  E-value=2.8e-06  Score=76.95  Aligned_cols=99  Identities=23%  Similarity=0.335  Sum_probs=67.0

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCC----cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFK----MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..+|||||+|+||+.+|+.|+ ..|    .+|.+||++++.                    .+.....+.++++++||+|
T Consensus         4 ~m~i~iiG~G~mG~~~a~~l~-~~g~~~~~~v~~~~~~~~~--------------------~g~~~~~~~~~~~~~~D~v   62 (262)
T 2rcy_A            4 NIKLGFMGLGQMGSALAHGIA-NANIIKKENLFYYGPSKKN--------------------TTLNYMSSNEELARHCDII   62 (262)
T ss_dssp             SSCEEEECCSHHHHHHHHHHH-HHTSSCGGGEEEECSSCCS--------------------SSSEECSCHHHHHHHCSEE
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCCCCCeEEEEeCCccc--------------------CceEEeCCHHHHHhcCCEE
Confidence            358999999999999999984 456    689999987642                    0122345788899999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      ++|+| ......++. +....++ +..+|...-|  ++.+.+.+.+..+
T Consensus        63 i~~v~-~~~~~~v~~-~l~~~l~-~~~vv~~~~g--i~~~~l~~~~~~~  106 (262)
T 2rcy_A           63 VCAVK-PDIAGSVLN-NIKPYLS-SKLLISICGG--LNIGKLEEMVGSE  106 (262)
T ss_dssp             EECSC-TTTHHHHHH-HSGGGCT-TCEEEECCSS--CCHHHHHHHHCTT
T ss_pred             EEEeC-HHHHHHHHH-HHHHhcC-CCEEEEECCC--CCHHHHHHHhCCC
Confidence            99999 345544443 2334454 4555555443  3445666666543

>1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A*

Probab=98.20  E-value=5.7e-06  Score=80.32  Aligned_cols=115  Identities=17%  Similarity=0.258  Sum_probs=74.8

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhh--------hhhhccCCCCccccccCCHHHHhhcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      +|+|||+|.||..+|..|+ . |.+|++||++++.. +.......        .+... .  ........++++.+++||
T Consensus         2 kI~VIG~G~vG~~~A~~La-~-G~~V~~~d~~~~~~-~~l~~~~~~i~e~~l~~~~~~-~--~~~l~~t~~~~~~~~~aD   75 (402)
T 1dlj_A            2 KIAVAGSGYVGLSLGVLLS-L-QNEVTIVDILPSKV-DKINNGLSPIQDEYIEYYLKS-K--QLSIKATLDSKAAYKEAE   75 (402)
T ss_dssp             EEEEECCSHHHHHHHHHHT-T-TSEEEEECSCHHHH-HHHHTTCCSSCCHHHHHHHHH-S--CCCEEEESCHHHHHHHCS
T ss_pred             EEEEECCCHHHHHHHHHHh-C-CCEEEEEECCHHHH-HHHHcCCCCcCCCCHHHHHHh-c--cCcEEEeCCHHHHhcCCC
Confidence            7999999999999999985 5 89999999986532 22211100        00000 0  001123356778889999


Q ss_pred             EEEEcCCCCc----------ccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          239 VISLHPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       239 iV~l~~pl~~----------~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      +|++|+|...          .....+ +.... +++|.++|+.+.-.+-..+.+.+.+.+.
T Consensus        76 vviiavpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~  134 (402)
T 1dlj_A           76 LVIIATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTD  134 (402)
T ss_dssp             EEEECCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS
T ss_pred             EEEEecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC
Confidence            9999999753          122222 23445 8899999997766665667777766543

>1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A*

Probab=98.20  E-value=3.6e-06  Score=79.73  Aligned_cols=107  Identities=17%  Similarity=0.192  Sum_probs=68.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCC-------cEEEEEcCCchh----HHHHHHhhhhhhhh-ccCC-CCccccccCCHHH
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQAT----RLEKFVTAYGQFLK-ANGE-QPVTWKRASSMDE  232 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg-------~~V~~~d~~~~~----~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~l~~  232 (342)
                      ++|+|||.|+||..+|..|+ ..|       .+|.+||++++.    ..+..... ..... ..+. .+.......++++
T Consensus         9 mkI~iIG~G~mG~~~a~~l~-~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~   86 (354)
T 1x0v_A            9 KKVCIVGSGNWGSAIAKIVG-GNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQ-HENVKYLPGHKLPPNVVAVPDVVQ   86 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHH-SCCTTTSTTCCCCTTEEEESSHHH
T ss_pred             CeEEEECCCHHHHHHHHHHH-hcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhc-CcccccCCcccCccCeEEEcCHHH
Confidence            58999999999999999985 446       899999988651    12221110 00000 0000 0112223467888


Q ss_pred             HhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       233 ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      ++++||+|++|+|. .....++ ++....+++++++|+++.|-.
T Consensus        87 ~~~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~  128 (354)
T 1x0v_A           87 AAEDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD  128 (354)
T ss_dssp             HHTTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred             HHcCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence            89999999999994 3444444 234456788999999988754

>2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus}

Probab=98.18  E-value=1.8e-05  Score=73.61  Aligned_cols=116  Identities=15%  Similarity=0.137  Sum_probs=76.4

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|++++|+|.|.+|+.++..| ...|+ +|.+++|++++ .+.+.+.++.    ..  . ......++.+.+.++|+|
T Consensus       138 ~l~~~~vlVlGaGg~g~aia~~L-~~~G~~~V~v~nR~~~k-a~~la~~~~~----~~--~-~~~~~~~~~~~~~~aDiv  208 (297)
T 2egg_A          138 TLDGKRILVIGAGGGARGIYFSL-LSTAAERIDMANRTVEK-AERLVREGDE----RR--S-AYFSLAEAETRLAEYDII  208 (297)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HTTTCSEEEEECSSHHH-HHHHHHHSCS----SS--C-CEECHHHHHHTGGGCSEE
T ss_pred             CCCCCEEEEECcHHHHHHHHHHH-HHCCCCEEEEEeCCHHH-HHHHHHHhhh----cc--C-ceeeHHHHHhhhccCCEE
Confidence            46799999999999999999998 57898 99999998753 2222221110    00  0 011113566778899999


Q ss_pred             EEcCCCCcccc--c-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 019387          241 SLHPVLDKTTY--H-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       241 ~l~~pl~~~t~--~-li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i  291 (342)
                      +.|+|......  . .++   .+.+++|.+++|++-.+... . |.++.++..+
T Consensus       209 In~t~~~~~~~~~~~~i~---~~~l~~~~~v~D~~y~P~~T-~-ll~~A~~~G~  257 (297)
T 2egg_A          209 INTTSVGMHPRVEVQPLS---LERLRPGVIVSDIIYNPLET-K-WLKEAKARGA  257 (297)
T ss_dssp             EECSCTTCSSCCSCCSSC---CTTCCTTCEEEECCCSSSSC-H-HHHHHHHTTC
T ss_pred             EECCCCCCCCCCCCCCCC---HHHcCCCCEEEEcCCCCCCC-H-HHHHHHHCcC
Confidence            99999754311  1 233   34578999999998854333 3 6655555433

>1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus}

Probab=98.18  E-value=6.2e-06  Score=81.53  Aligned_cols=141  Identities=14%  Similarity=0.147  Sum_probs=82.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh----hhhh-----hhccCCCCccccccCCHHHHhh
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA----YGQF-----LKANGEQPVTWKRASSMDEVLR  235 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~----~~~~-----~~~~~~~~~~~~~~~~l~~ll~  235 (342)
                      -++|||||.|.||..+|..|+ ..|.+|++||++++.. +.....    +...     +..............++ +.++
T Consensus        37 ~~kV~VIGaG~MG~~iA~~la-~~G~~V~l~D~~~~~~-~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~  113 (463)
T 1zcj_A           37 VSSVGVLGLGTMGRGIAISFA-RVGISVVAVESDPKQL-DAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELS  113 (463)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSHHHH-HHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGT
T ss_pred             CCEEEEECcCHHHHHHHHHHH-hCCCeEEEEECCHHHH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHC
Confidence            368999999999999999985 6799999999987532 211110    0000     00000000001113456 4678


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      +||+|+.++|.+.+.+.-+-++....+++++++++.+- . +....|.+++.. .-..+++..|.+.+  +.+.+.++
T Consensus       114 ~aDlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs-~-~~~~~la~~~~~-~~~~ig~hf~~P~~~~~lvevv~g  188 (463)
T 1zcj_A          114 TVDLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTS-A-LNVDDIASSTDR-PQLVIGTHFFSPAHVMRLLEVIPS  188 (463)
T ss_dssp             TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCS-S-SCHHHHHTTSSC-GGGEEEEEECSSTTTCCEEEEEEC
T ss_pred             CCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCC-C-cCHHHHHHHhcC-CcceEEeecCCCcccceeEEEeCC
Confidence            99999999996544333333455567899999997433 3 334466666542 23446777774332  33444444

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=98.17  E-value=6.8e-06  Score=80.45  Aligned_cols=110  Identities=19%  Similarity=0.265  Sum_probs=74.1

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH---------
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV---------  233 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l---------  233 (342)
                      -+|+++.|||+|.+|..+|..|+ ..|.+|++||+.++. .+.+..         +..+.   ....++++         
T Consensus         9 ~~~~~~~ViGlGyvGlp~A~~La-~~G~~V~~~D~~~~k-v~~L~~---------g~~pi---~epgl~~ll~~~~~~g~   74 (431)
T 3ojo_A            9 HHGSKLTVVGLGYIGLPTSIMFA-KHGVDVLGVDINQQT-IDKLQN---------GQISI---EEPGLQEVYEEVLSSGK   74 (431)
T ss_dssp             ---CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHH-HHHHHT---------TCCSS---CCTTHHHHHHHHHHTTC
T ss_pred             ccCCccEEEeeCHHHHHHHHHHH-HCCCEEEEEECCHHH-HHHHHC---------CCCCc---CCCCHHHHHHhhcccCc
Confidence            47899999999999999999986 569999999998754 333221         11111   11122222         


Q ss_pred             ------hhcCCEEEEcCCCCcccc--------cccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387          234 ------LREADVISLHPVLDKTTY--------HLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       234 ------l~~aDiV~l~~pl~~~t~--------~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL  286 (342)
                            +++||+|++|+|......        .+..  +...+.+++|.++|+.|.-.+=..+.+.+.+
T Consensus        75 l~~ttd~~~aDvvii~VpTp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i  143 (431)
T 3ojo_A           75 LKVSTTPEASDVFIIAVPTPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPV  143 (431)
T ss_dssp             EEEESSCCCCSEEEECCCCCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHH
T ss_pred             eEEeCchhhCCEEEEEeCCCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHH
Confidence                  357999999999654322        1222  4566779999999999977776677777654

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=98.17  E-value=5.2e-06  Score=82.30  Aligned_cols=116  Identities=13%  Similarity=0.143  Sum_probs=74.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcC-Cc-EEEEEcCCchh---HHHHHHhhhh----------hhhhccCCCCccccccCCH
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGF-KM-NLIYYDLYQAT---RLEKFVTAYG----------QFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~af-g~-~V~~~d~~~~~---~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~l  230 (342)
                      ++|+|||+|.||..+|..|+ .. |. +|++||+.+++   +.+.......          .+... ....-.....++ 
T Consensus        19 mkIaVIGlG~mG~~lA~~la-~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~-~~~~g~l~~ttd-   95 (478)
T 3g79_A           19 KKIGVLGMGYVGIPAAVLFA-DAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGK-VVKAGKFECTPD-   95 (478)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHH-HHHTTCEEEESC-
T ss_pred             CEEEEECcCHHHHHHHHHHH-HhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHh-hcccCCeEEeCc-
Confidence            58999999999999999986 56 88 99999998761   2222211100          00000 000001112234 


Q ss_pred             HHHhhcCCEEEEcCCCCccc--------cccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 019387          231 DEVLREADVISLHPVLDKTT--------YHLI--NKERLATMKKEAILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       231 ~~ll~~aDiV~l~~pl~~~t--------~~li--~~~~l~~mk~ga~lINvaRG~~vd~~aL~~  284 (342)
                      .+.+++||+|++|+|.....        ..+.  .+.....+++|.++|+.+.-.+=..+.+.+
T Consensus        96 ~ea~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~  159 (478)
T 3g79_A           96 FSRISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAK  159 (478)
T ss_dssp             GGGGGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHH
T ss_pred             HHHHhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHH
Confidence            56789999999999965322        2222  245667899999999998777666666665

>1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A*

Probab=98.16  E-value=1.6e-06  Score=82.79  Aligned_cols=108  Identities=15%  Similarity=0.188  Sum_probs=69.1

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccC-CCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|+|||.|+||..+|..| ...|.+|.+||++++.. +...+.........+ ..+.......++++++..+|+|++|+|
T Consensus        17 kI~iIG~G~mG~~la~~L-~~~G~~V~~~~r~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~   94 (366)
T 1evy_A           17 KAVVFGSGAFGTALAMVL-SKKCREVCVWHMNEEEV-RLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP   94 (366)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTTEEEEEEECSCHHHH-HHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCC
T ss_pred             eEEEECCCHHHHHHHHHH-HhCCCEEEEEECCHHHH-HHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCC
Confidence            899999999999999998 46688999999986432 222111000000000 001112234678888999999999999


Q ss_pred             CCcccccccCHH---HHhcCCC-CcEEEEcCCCccc
Q 019387          246 LDKTTYHLINKE---RLATMKK-EAILVNCSRGPVI  277 (342)
Q Consensus       246 l~~~t~~li~~~---~l~~mk~-ga~lINvaRG~~v  277 (342)
                      . .....++...   ....+++ |+++|+++.|-..
T Consensus        95 ~-~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi~~  129 (366)
T 1evy_A           95 T-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGIER  129 (366)
T ss_dssp             H-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSCCT
T ss_pred             h-HHHHHHHHHhHHHHHHhcCccCCEEEEECCcCCC
Confidence            4 4445554331   3345677 8999999877443

>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8

Probab=98.14  E-value=2.2e-06  Score=70.91  Aligned_cols=104  Identities=11%  Similarity=0.087  Sum_probs=74.3

Q ss_pred             ccCCCeEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387          162 LLKGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~L~gktvgIvG~----G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                      ...-++|+|||.    |++|+.+++.| ...|.+|+.+|+..+..                   .+...+.+++++....
T Consensus        11 l~~p~~IavIGaS~~~g~~G~~~~~~L-~~~G~~V~~vnp~~~~i-------------------~G~~~~~s~~el~~~v   70 (138)
T 1y81_A           11 SKEFRKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDV   70 (138)
T ss_dssp             ---CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGSCTTC
T ss_pred             ccCCCeEEEEeecCCCCCHHHHHHHHH-HHCCCEEEEeCCCCCeE-------------------CCeeecCCHHHhCCCC
Confidence            355678999999    99999999998 67789988888764221                   1233457889998899


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      |++++++| .+....++.+ ..+ ...++++++.+.   . .+++.++.++..+.
T Consensus        71 Dlvii~vp-~~~v~~v~~~-~~~-~g~~~i~~~~~~---~-~~~l~~~a~~~Gi~  118 (138)
T 1y81_A           71 DVIVFVVP-PKVGLQVAKE-AVE-AGFKKLWFQPGA---E-SEEIRRFLEKAGVE  118 (138)
T ss_dssp             CEEEECSC-HHHHHHHHHH-HHH-TTCCEEEECTTS---C-CHHHHHHHHHHTCE
T ss_pred             CEEEEEeC-HHHHHHHHHH-HHH-cCCCEEEEcCcc---H-HHHHHHHHHHCCCE
Confidence            99999999 4666666643 333 666777777743   2 46677777765555

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=98.12  E-value=1.2e-05  Score=79.90  Aligned_cols=118  Identities=13%  Similarity=0.143  Sum_probs=73.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCC--------CccccccCCHHHHhhcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--------PVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~ll~~a  237 (342)
                      .+|+|||+|.||..+|..|+ ..|.+|++||+.++. .+.....-.. +...+..        .......+++++.++.|
T Consensus         9 ~~I~VIG~G~vG~~lA~~la-~~G~~V~~~d~~~~~-v~~l~~~~~~-i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~a   85 (478)
T 2y0c_A            9 MNLTIIGSGSVGLVTGACLA-DIGHDVFCLDVDQAK-IDILNNGGVP-IHEPGLKEVIARNRSAGRLRFSTDIEAAVAHG   85 (478)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHH-HHHHHTTCCS-SCCTTHHHHHHHHHHTTCEEEECCHHHHHHHC
T ss_pred             ceEEEECcCHHHHHHHHHHH-hCCCEEEEEECCHHH-HHHHHCCCCC-cCCCCHHHHHHHhcccCCEEEECCHHHHhhcC
Confidence            58999999999999999985 678999999998653 3322211000 0000000        00122346788889999


Q ss_pred             CEEEEcCCCCc---------ccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHH
Q 019387          238 DVISLHPVLDK---------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       238 DiV~l~~pl~~---------~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                      |+|++|+|...         ..+..+ +.....+++|+++|+.+.-.+=..+.+.+.+.
T Consensus        86 DvviiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l~  143 (478)
T 2y0c_A           86 DVQFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAVA  143 (478)
T ss_dssp             SEEEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHH
T ss_pred             CEEEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHHH
Confidence            99999998632         222222 33456789999999998433333344545444

>1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A*

Probab=98.11  E-value=1.7e-05  Score=75.60  Aligned_cols=99  Identities=17%  Similarity=0.224  Sum_probs=69.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .++++||||.|.+|+.+++.|+...+ -+|.+||++++. .+++.+.+.    ..  .........++++++++||+|++
T Consensus       128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~-a~~la~~~~----~~--~g~~~~~~~~~~eav~~aDiVi~  200 (350)
T 1x7d_A          128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLA-TAKLIANLK----EY--SGLTIRRASSVAEAVKGVDIITT  200 (350)
T ss_dssp             TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHH-HHHHHHHHT----TC--TTCEEEECSSHHHHHTTCSEEEE
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHH-HHHHHHHHH----hc--cCceEEEeCCHHHHHhcCCEEEE
Confidence            36799999999999999987644444 489999998754 333333221    00  01112345789999999999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+|.. ....++..   +.+++|..+++++.
T Consensus       201 aTps~-~~~pvl~~---~~l~~G~~V~~vgs  227 (350)
T 1x7d_A          201 VTADK-AYATIITP---DMLEPGMHLNAVGG  227 (350)
T ss_dssp             CCCCS-SEEEEECG---GGCCTTCEEEECSC
T ss_pred             eccCC-CCCceecH---HHcCCCCEEEECCC
Confidence            99975 23455554   46889999999985

>1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6

Probab=98.10  E-value=7.8e-06  Score=76.55  Aligned_cols=115  Identities=17%  Similarity=0.163  Sum_probs=71.0

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcC--CchhHHHHHHhhhhhhhhccCCCCccccccC--CHHHHhhcCCEEEE
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL--YQATRLEKFVTAYGQFLKANGEQPVTWKRAS--SMDEVLREADVISL  242 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~ll~~aDiV~l  242 (342)
                      +|+|||.|.||..+|..|+ ..|.+|.+||+  +++. .+...... .... .+..........  ++++.++++|+|++
T Consensus         2 ~I~iiG~G~mG~~~a~~L~-~~g~~V~~~~r~~~~~~-~~~~~~~~-~~~~-~g~~~~~~~~~~~~~~~~~~~~~D~vi~   77 (335)
T 1txg_A            2 IVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEI-LKSISAGR-EHPR-LGVKLNGVEIFWPEQLEKCLENAEVVLL   77 (335)
T ss_dssp             EEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHH-HHHHHTTC-CBTT-TTBCCCSEEEECGGGHHHHHTTCSEEEE
T ss_pred             EEEEECcCHHHHHHHHHHH-hCCCeEEEEEccCCHHH-HHHHHHhC-cCcc-cCccccceEEecHHhHHHHHhcCCEEEE
Confidence            7999999999999999985 55889999998  6543 22211100 0000 000000011223  67788899999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCc---cc-CHHHHHHHHHc
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP---VI-DEVALVEHLKQ  288 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~---~v-d~~aL~~aL~~  288 (342)
                      |+|.. .+..++. .... ++++.++|+++.|-   -. ..+.+.+.+.+
T Consensus        78 ~v~~~-~~~~v~~-~i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~  124 (335)
T 1txg_A           78 GVSTD-GVLPVMS-RILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRL  124 (335)
T ss_dssp             CSCGG-GHHHHHH-HHTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTT
T ss_pred             cCChH-HHHHHHH-HHhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHH
Confidence            99953 4444442 3345 78899999998774   11 22345566654

>3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis}

Probab=98.09  E-value=2.2e-05  Score=73.65  Aligned_cols=94  Identities=19%  Similarity=0.312  Sum_probs=65.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .++++|||.|.+|+..++.|++.++ -+|.+||++ +.  +++.+.+..   ..+   ..+... ++++++++||+|++|
T Consensus       121 ~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~-~a--~~la~~l~~---~~g---~~~~~~-~~~eav~~aDIVi~a  190 (313)
T 3hdj_A          121 SSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPY-AS--PEILERIGR---RCG---VPARMA-APADIAAQADIVVTA  190 (313)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTT-CC--HHHHHHHHH---HHT---SCEEEC-CHHHHHHHCSEEEEC
T ss_pred             CcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCc-HH--HHHHHHHHH---hcC---CeEEEe-CHHHHHhhCCEEEEc
Confidence            6799999999999999998754454 489999998 22  222221110   001   112234 899999999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      +|..   ..++..   ..+++|++++++|--
T Consensus       191 T~s~---~pvl~~---~~l~~G~~V~~vGs~  215 (313)
T 3hdj_A          191 TRST---TPLFAG---QALRAGAFVGAIGSS  215 (313)
T ss_dssp             CCCS---SCSSCG---GGCCTTCEEEECCCS
T ss_pred             cCCC---CcccCH---HHcCCCcEEEECCCC
Confidence            9863   456654   468999999999754

>1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum}

Probab=98.08  E-value=4.8e-06  Score=79.79  Aligned_cols=107  Identities=10%  Similarity=0.102  Sum_probs=67.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCC-------cEEEEEcCCchh----HHHHHHhhh-hhhhhccCCCCccccccCCHHHH
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFK-------MNLIYYDLYQAT----RLEKFVTAY-GQFLKANGEQPVTWKRASSMDEV  233 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg-------~~V~~~d~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l  233 (342)
                      ++|+|||.|+||..+|..|++ -|       .+|.+||+.++.    ..+.....- ..........+.......+++++
T Consensus        22 ~kI~iIGaG~mG~alA~~L~~-~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea  100 (375)
T 1yj8_A           22 LKISILGSGNWASAISKVVGT-NAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASV  100 (375)
T ss_dssp             BCEEEECCSHHHHHHHHHHHH-HHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHH-cCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHH
Confidence            479999999999999999854 35       789999987651    122111100 00000000001122334678888


Q ss_pred             hhcCCEEEEcCCCCcccccccCHHHHh----cCCCCcEEEEcCCCc
Q 019387          234 LREADVISLHPVLDKTTYHLINKERLA----TMKKEAILVNCSRGP  275 (342)
Q Consensus       234 l~~aDiV~l~~pl~~~t~~li~~~~l~----~mk~ga~lINvaRG~  275 (342)
                      +++||+|++++|. ...+.++. +...    .+++++++|+++-|-
T Consensus       101 ~~~aDvVilav~~-~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~Gi  144 (375)
T 1yj8_A          101 INDADLLIFIVPC-QYLESVLA-SIKESESIKIASHAKAISLTKGF  144 (375)
T ss_dssp             HTTCSEEEECCCH-HHHHHHHH-HHTC---CCCCTTCEEEECCCSC
T ss_pred             HcCCCEEEEcCCH-HHHHHHHH-HHhhhhhccCCCCCEEEEeCCcc
Confidence            8999999999994 44444443 2334    678899999998773

>4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti}

Probab=98.07  E-value=9e-06  Score=72.13  Aligned_cols=93  Identities=22%  Similarity=0.233  Sum_probs=60.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      -++|||||.|+||..+|+.|+ ..|.+|.+ +|++++.. +.....+       +.     ....+..+.++++|+|+++
T Consensus        23 mmkI~IIG~G~mG~~la~~l~-~~g~~V~~v~~r~~~~~-~~l~~~~-------g~-----~~~~~~~~~~~~aDvVila   88 (220)
T 4huj_A           23 MTTYAIIGAGAIGSALAERFT-AAQIPAIIANSRGPASL-SSVTDRF-------GA-----SVKAVELKDALQADVVILA   88 (220)
T ss_dssp             SCCEEEEECHHHHHHHHHHHH-HTTCCEEEECTTCGGGG-HHHHHHH-------TT-----TEEECCHHHHTTSSEEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCEEEEEECCCHHHH-HHHHHHh-------CC-----CcccChHHHHhcCCEEEEe
Confidence            368999999999999999984 66899998 99987542 2221111       11     1112445567899999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      +|. .....++.+  +.. .++.++|+++-|-
T Consensus        89 vp~-~~~~~v~~~--l~~-~~~~ivi~~~~g~  116 (220)
T 4huj_A           89 VPY-DSIADIVTQ--VSD-WGGQIVVDASNAI  116 (220)
T ss_dssp             SCG-GGHHHHHTT--CSC-CTTCEEEECCCCB
T ss_pred             CCh-HHHHHHHHH--hhc-cCCCEEEEcCCCC
Confidence            983 222333221  122 3588999998553

>1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A*

Probab=98.06  E-value=3.1e-05  Score=74.23  Aligned_cols=137  Identities=15%  Similarity=0.194  Sum_probs=93.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC----chhH---HHHHHhhhhhhhhccCCCCccccccCCHHH
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY----QATR---LEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  232 (342)
                      ..+.+.+|.|+|.|..|..+|+.| .+.|. +|+.+|++    ....   +..+...|..   ...  .  .....+|++
T Consensus       188 ~~l~~~kVVv~GAGaAG~~iAkll-~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~---~~~--~--~~~~~~L~e  259 (388)
T 1vl6_A          188 KKIEEVKVVVNGIGAAGYNIVKFL-LDLGVKNVVAVDRKGILNENDPETCLNEYHLEIAR---ITN--P--ERLSGDLET  259 (388)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHH-HHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHH---TSC--T--TCCCSCHHH
T ss_pred             CCCCCcEEEEECCCHHHHHHHHHH-HhCCCCeEEEEECCCcccCCCcccccCHHHHHHHH---hhh--c--cCchhhHHH
Confidence            468899999999999999999997 68899 89999998    3221   2222222221   111  1  113468999


Q ss_pred             HhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCC-ceEEEEecCCCCCCCccccc
Q 019387          233 VLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNP-MFRVGLDVFEVTELGFSSFK  310 (342)
Q Consensus       233 ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~aL~~g~-i~~aaLDV~~~EP~~~~~tP  310 (342)
                      .++++|+++-+..     .++|+++.++.|+++++++.+++... +..++.+++   |+ |.+-+---+.++-.|++..|
T Consensus       260 av~~ADVlIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNPt~E~~p~~a~~~---g~~i~atGr~~~p~Q~NN~~~FP  331 (388)
T 1vl6_A          260 ALEGADFFIGVSR-----GNILKPEWIKKMSRKPVIFALANPVPEIDPELAREA---GAFIVATGRSDHPNQVNNLLAFP  331 (388)
T ss_dssp             HHTTCSEEEECSC-----SSCSCHHHHTTSCSSCEEEECCSSSCSSCHHHHHHT---TCSEEEESCTTSSSBCCGGGTHH
T ss_pred             HHccCCEEEEeCC-----CCccCHHHHHhcCCCCEEEEcCCCCCCCCHHHHHHh---cCeEEEeCCCCCCCcCCceeEcc
Confidence            9999999987731     39999999999999999999997543 333334443   54 44343222222237888888


Q ss_pred             ccc
Q 019387          311 HIS  313 (342)
Q Consensus       311 hia  313 (342)
                      -+.
T Consensus       332 gi~  334 (388)
T 1vl6_A          332 GIM  334 (388)
T ss_dssp             HHH
T ss_pred             hHh
Confidence            763

>1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A*

Probab=98.05  E-value=8e-06  Score=84.94  Aligned_cols=130  Identities=18%  Similarity=0.186  Sum_probs=81.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH--H-hhhhhhhhccCCCC--------ccccccCCHHHHh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF--V-TAYGQFLKANGEQP--------VTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~--~-~~~~~~~~~~~~~~--------~~~~~~~~l~~ll  234 (342)
                      ++|||||.|.||..+|..++ ..|.+|++||++++......  . ..+... ...+...        .......++ +.+
T Consensus       315 ~kV~VIGaG~MG~~iA~~la-~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~-~~~G~~~~~~~~~~~~~i~~~~d~-~~~  391 (715)
T 1wdk_A          315 KQAAVLGAGIMGGGIAYQSA-SKGTPILMKDINEHGIEQGLAEAAKLLVGR-VDKGRMTPAKMAEVLNGIRPTLSY-GDF  391 (715)
T ss_dssp             SSEEEECCHHHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHHHH-HTTTSSCHHHHHHHHHHEEEESSS-TTG
T ss_pred             CEEEEECCChhhHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHHHHhcCeEEECCH-HHH
Confidence            57999999999999999985 56999999999876432110  0 000000 1111110        011223455 568


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV  301 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~  301 (342)
                      ++||+|+.++|.+.+.+.-+-++....++++++++..+.+  +....+.+.+. ..-..+++..|.+
T Consensus       392 ~~aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~-~~~~~ig~hf~~P  455 (715)
T 1wdk_A          392 GNVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTST--ISISLLAKALK-RPENFVGMHFFNP  455 (715)
T ss_dssp             GGCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSS--SCHHHHGGGCS-CGGGEEEEECCSS
T ss_pred             CCCCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCC--CCHHHHHHHhc-CccceEEEEccCC
Confidence            9999999999977665554445566788999999854333  44455666553 2234577777763

>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}

Probab=98.02  E-value=2.4e-06  Score=71.18  Aligned_cols=105  Identities=10%  Similarity=0.161  Sum_probs=74.0

Q ss_pred             CCeEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvgIvG~----G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      -++|+|||.    |++|..+++.| ...|.+|+.+|+.....                 .-.+...+.+++++....|++
T Consensus        13 p~~IavIGas~~~g~~G~~~~~~L-~~~G~~v~~vnp~~~g~-----------------~i~G~~~~~sl~el~~~~Dlv   74 (145)
T 2duw_A           13 TRTIALVGASDKPDRPSYRVMKYL-LDQGYHVIPVSPKVAGK-----------------TLLGQQGYATLADVPEKVDMV   74 (145)
T ss_dssp             CCCEEEESCCSCTTSHHHHHHHHH-HHHTCCEEEECSSSTTS-----------------EETTEECCSSTTTCSSCCSEE
T ss_pred             CCEEEEECcCCCCCChHHHHHHHH-HHCCCEEEEeCCccccc-----------------ccCCeeccCCHHHcCCCCCEE
Confidence            568999999    89999999997 56788888888765100                 001233456788888899999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~a  294 (342)
                      ++++| .+....++.+ ..+ ...++++++.+  . + ++++.+++++..+.-.
T Consensus        75 ii~vp-~~~v~~v~~~-~~~-~g~~~i~i~~~--~-~-~~~l~~~a~~~Gi~~i  121 (145)
T 2duw_A           75 DVFRN-SEAAWGVAQE-AIA-IGAKTLWLQLG--V-I-NEQAAVLAREAGLSVV  121 (145)
T ss_dssp             ECCSC-STHHHHHHHH-HHH-HTCCEEECCTT--C-C-CHHHHHHHHTTTCEEE
T ss_pred             EEEeC-HHHHHHHHHH-HHH-cCCCEEEEcCC--h-H-HHHHHHHHHHcCCEEE
Confidence            99999 4666666643 333 55677777753  2 2 6778888887666533

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=98.01  E-value=8.8e-06  Score=74.42  Aligned_cols=96  Identities=10%  Similarity=0.091  Sum_probs=63.8

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc--ccc-ccCCHHHHhhcCCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWK-RASSMDEVLREADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~l~~ll~~aDiV~l~  243 (342)
                      +|+|||.|+||..+|..|+ ..|.+|.+||++++.. +.        +...+....  ... ...+ .+.++.+|+|++|
T Consensus         2 ~i~iiG~G~~G~~~a~~l~-~~g~~V~~~~r~~~~~-~~--------l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~   70 (291)
T 1ks9_A            2 KITVLGCGALGQLWLTALC-KQGHEVQGWLRVPQPY-CS--------VNLVETDGSIFNESLTAND-PDFLATSDLLLVT   70 (291)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCEEEEECSSCCSE-EE--------EEEECTTSCEEEEEEEESC-HHHHHTCSEEEEC
T ss_pred             eEEEECcCHHHHHHHHHHH-hCCCCEEEEEcCccce-ee--------EEEEcCCCceeeeeeeecC-ccccCCCCEEEEE
Confidence            7999999999999999984 6689999999876431 11        111111000  000 1223 4677899999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      +|.. .+..++ +.....+++++++|++.-|-
T Consensus        71 v~~~-~~~~v~-~~l~~~l~~~~~vv~~~~g~  100 (291)
T 1ks9_A           71 LKAW-QVSDAV-KSLASTLPVTTPILLIHNGM  100 (291)
T ss_dssp             SCGG-GHHHHH-HHHHTTSCTTSCEEEECSSS
T ss_pred             ecHH-hHHHHH-HHHHhhCCCCCEEEEecCCC
Confidence            9954 444444 34456678899999986653

>1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima}

Probab=97.99  E-value=7.5e-06  Score=77.21  Aligned_cols=100  Identities=15%  Similarity=0.258  Sum_probs=64.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      -.+|+|||.|+||..+|..|+ .-|.+|.+|+++++.. +...+.- .-....+.. .......+.++ +..+|+|++++
T Consensus        14 ~~kI~iIG~G~mG~ala~~L~-~~G~~V~~~~r~~~~~-~~l~~~g-~~~~~~~~~-~~~~~~~~~~~-~~~aDvVil~v   88 (335)
T 1z82_A           14 EMRFFVLGAGSWGTVFAQMLH-ENGEEVILWARRKEIV-DLINVSH-TSPYVEESK-ITVRATNDLEE-IKKEDILVIAI   88 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSHHHH-HHHHHHS-CBTTBTTCC-CCSEEESCGGG-CCTTEEEEECS
T ss_pred             CCcEEEECcCHHHHHHHHHHH-hCCCeEEEEeCCHHHH-HHHHHhC-CcccCCCCe-eeEEEeCCHHH-hcCCCEEEEEC
Confidence            358999999999999999985 5689999999986432 2221110 000000000 01223456777 88999999999


Q ss_pred             CCCcccccccCHHHHhcCC-CCcEEEEcCCCc
Q 019387          245 VLDKTTYHLINKERLATMK-KEAILVNCSRGP  275 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk-~ga~lINvaRG~  275 (342)
                      |. ..++.++.     .++ +|.++|+++-|-
T Consensus        89 k~-~~~~~v~~-----~l~~~~~~vv~~~nGi  114 (335)
T 1z82_A           89 PV-QYIREHLL-----RLPVKPSMVLNLSKGI  114 (335)
T ss_dssp             CG-GGHHHHHT-----TCSSCCSEEEECCCCC
T ss_pred             CH-HHHHHHHH-----HhCcCCCEEEEEeCCC
Confidence            94 55544443     333 789999998763

>2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana}

Probab=97.99  E-value=1.4e-05  Score=83.28  Aligned_cols=130  Identities=18%  Similarity=0.167  Sum_probs=79.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHH---hhhhhhhhccCCC--------CccccccCCHHHHh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFV---TAYGQFLKANGEQ--------PVTWKRASSMDEVL  234 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~---~~~~~~~~~~~~~--------~~~~~~~~~l~~ll  234 (342)
                      ++|||||.|.||..+|..++ ..|.+|++||++++.......   ..+.... ..+..        ........++ +.+
T Consensus       313 ~kV~VIGaG~MG~~iA~~la-~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~-~~G~~~~~~~~~~~~~i~~~~d~-~~~  389 (725)
T 2wtb_A          313 KKVAIIGGGLMGSGIATALI-LSNYPVILKEVNEKFLEAGIGRVKANLQSRV-RKGSMSQEKFEKTMSLLKGSLDY-ESF  389 (725)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-TTTCCEEEECSSHHHHHHHHHHHHHHHHHTT-C----CTTHHHHTTTSEEEESSS-GGG
T ss_pred             cEEEEEcCCHhhHHHHHHHH-hCCCEEEEEECCHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHHHhcceEEeCCH-HHH
Confidence            57999999999999999985 569999999998764221100   0000000 11110        0011223456 468


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV  301 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~  301 (342)
                      ++||+|+.++|.+.+.+.-+-++....++++++++..+.+  +....+.+.+.. .-..+++..|.+
T Consensus       390 ~~aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntSt--l~i~~la~~~~~-p~~~iG~hf~~P  453 (725)
T 2wtb_A          390 RDVDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTST--IDLNKIGERTKS-QDRIVGAHFFSP  453 (725)
T ss_dssp             TTCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHTTTCSC-TTTEEEEEECSS
T ss_pred             CCCCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCC--CCHHHHHHHhcC-CCCEEEecCCCC
Confidence            8999999999976655544445566778999999654332  344556555532 224567776763

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.98  E-value=3.5e-06  Score=72.27  Aligned_cols=101  Identities=10%  Similarity=0.117  Sum_probs=64.1

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc--ccCCHHHH--hh
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEV--LR  235 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~l--l~  235 (342)
                      .++.+++|+|+|+|.+|+.+|+.| +.. |.+|+++|++++.. +...        ..+.......  ....+.++  +.
T Consensus        35 ~~~~~~~v~IiG~G~~G~~~a~~L-~~~~g~~V~vid~~~~~~-~~~~--------~~g~~~~~gd~~~~~~l~~~~~~~  104 (183)
T 3c85_A           35 INPGHAQVLILGMGRIGTGAYDEL-RARYGKISLGIEIREEAA-QQHR--------SEGRNVISGDATDPDFWERILDTG  104 (183)
T ss_dssp             BCCTTCSEEEECCSHHHHHHHHHH-HHHHCSCEEEEESCHHHH-HHHH--------HTTCCEEECCTTCHHHHHTBCSCC
T ss_pred             cCCCCCcEEEECCCHHHHHHHHHH-HhccCCeEEEEECCHHHH-HHHH--------HCCCCEEEcCCCCHHHHHhccCCC
Confidence            457788999999999999999997 677 99999999987542 2211        1121111000  01123444  67


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ++|+|++++|..+.+..++  ..++.+.++..+|..+.
T Consensus       105 ~ad~vi~~~~~~~~~~~~~--~~~~~~~~~~~ii~~~~  140 (183)
T 3c85_A          105 HVKLVLLAMPHHQGNQTAL--EQLQRRNYKGQIAAIAE  140 (183)
T ss_dssp             CCCEEEECCSSHHHHHHHH--HHHHHTTCCSEEEEEES
T ss_pred             CCCEEEEeCCChHHHHHHH--HHHHHHCCCCEEEEEEC
Confidence            8999999998644444333  34566666666665433

>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus}

Probab=97.98  E-value=1.4e-05  Score=71.63  Aligned_cols=97  Identities=24%  Similarity=0.263  Sum_probs=70.9

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEE-EEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCEEEEcC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV~l~~  244 (342)
                      +|||||+|.||+.+++.|. .-|+++ .+||+....  +               .     .+.++++++ .++|+|++|+
T Consensus         2 ~vgiIG~G~mG~~~~~~l~-~~g~~lv~v~d~~~~~--~---------------~-----~~~~~~~l~~~~~DvVv~~~   58 (236)
T 2dc1_A            2 LVGLIGYGAIGKFLAEWLE-RNGFEIAAILDVRGEH--E---------------K-----MVRGIDEFLQREMDVAVEAA   58 (236)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSCCC--T---------------T-----EESSHHHHTTSCCSEEEECS
T ss_pred             EEEEECCCHHHHHHHHHHh-cCCCEEEEEEecCcch--h---------------h-----hcCCHHHHhcCCCCEEEECC
Confidence            7999999999999999874 678887 588876421  0               0     246889998 6999999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNPM  291 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~---~aL~~aL~~g~i  291 (342)
                      |....     -+.....++.|..+|..+-+..-+.   +.|.++.++...
T Consensus        59 ~~~~~-----~~~~~~~l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~~g~  103 (236)
T 2dc1_A           59 SQQAV-----KDYAEKILKAGIDLIVLSTGAFADRDFLSRVREVCRKTGR  103 (236)
T ss_dssp             CHHHH-----HHHHHHHHHTTCEEEESCGGGGGSHHHHHHHHHHHHHHCC
T ss_pred             CHHHH-----HHHHHHHHHCCCcEEEECcccCChHHHHHHHHHHHHhcCC
Confidence            84221     1223456778999999988877666   567777765333

>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis}

Probab=97.93  E-value=1e-05  Score=74.84  Aligned_cols=120  Identities=18%  Similarity=0.189  Sum_probs=71.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCC-CCccccccCCHHHHh---hcCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVL---READVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ll---~~aDiV~  241 (342)
                      .+|+|||.|.||..+|..|+ .-|.+|.+||++++.. +...+. +......+. ...... ..+.+++.   +++|+|+
T Consensus         4 m~i~iiG~G~~G~~~a~~l~-~~g~~V~~~~r~~~~~-~~~~~~-g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~vi   79 (316)
T 2ew2_A            4 MKIAIAGAGAMGSRLGIMLH-QGGNDVTLIDQWPAHI-EAIRKN-GLIADFNGEEVVANLP-IFSPEEIDHQNEQVDLII   79 (316)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHHH-CEEEEETTEEEEECCC-EECGGGCCTTSCCCSEEE
T ss_pred             CeEEEECcCHHHHHHHHHHH-hCCCcEEEEECCHHHH-HHHHhC-CEEEEeCCCeeEecce-eecchhhcccCCCCCEEE
Confidence            48999999999999999984 5689999999986532 222111 000000000 000000 01223333   3899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +|+|. ..+..++ +.....++++.++|+++-|- -..+.+.+.+.+.++.
T Consensus        80 ~~v~~-~~~~~v~-~~l~~~l~~~~~iv~~~~g~-~~~~~l~~~~~~~~vi  127 (316)
T 2ew2_A           80 ALTKA-QQLDAMF-KAIQPMITEKTYVLCLLNGL-GHEDVLEKYVPKENIL  127 (316)
T ss_dssp             ECSCH-HHHHHHH-HHHGGGCCTTCEEEECCSSS-CTHHHHTTTSCGGGEE
T ss_pred             EEecc-ccHHHHH-HHHHHhcCCCCEEEEecCCC-CcHHHHHHHcCCccEE
Confidence            99994 3444444 33445678899999997653 2345566666544333

>1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A

Probab=97.92  E-value=5.3e-05  Score=71.27  Aligned_cols=93  Identities=15%  Similarity=0.222  Sum_probs=66.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ..++++|||.|.+|+.+++.|++..+ -+|.+||++++. .+++.+.+..    .+   .... ..++++++ ++|+|++
T Consensus       124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~-a~~la~~~~~----~~---~~~~-~~~~~e~v-~aDvVi~  193 (322)
T 1omo_A          124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKA-AKKFVSYCED----RG---ISAS-VQPAEEAS-RCDVLVT  193 (322)
T ss_dssp             TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHH-HHHHHHHHHH----TT---CCEE-ECCHHHHT-SSSEEEE
T ss_pred             CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHH-HHHHHHHHHh----cC---ceEE-ECCHHHHh-CCCEEEE
Confidence            36799999999999999998754344 579999998754 3333332211    11   1123 46899999 9999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      |+|..   ..++..   +.+++|..+++++
T Consensus       194 aTp~~---~pv~~~---~~l~~G~~V~~ig  217 (322)
T 1omo_A          194 TTPSR---KPVVKA---EWVEEGTHINAIG  217 (322)
T ss_dssp             CCCCS---SCCBCG---GGCCTTCEEEECS
T ss_pred             eeCCC---CceecH---HHcCCCeEEEECC
Confidence            99953   355553   4688999999995

>3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A*

Probab=97.90  E-value=4.4e-05  Score=70.08  Aligned_cols=106  Identities=16%  Similarity=0.041  Sum_probs=72.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      |+++.|+|.|.+|++++..| ...|.+|.+++|.+++. +... .+       +..   .   .+++++ .++|+|+.++
T Consensus       118 ~k~vlvlGaGGaaraia~~L-~~~G~~v~V~nRt~~ka-~~la-~~-------~~~---~---~~~~~l-~~~DiVInaT  180 (269)
T 3phh_A          118 YQNALILGAGGSAKALACEL-KKQGLQVSVLNRSSRGL-DFFQ-RL-------GCD---C---FMEPPK-SAFDLIINAT  180 (269)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCTTH-HHHH-HH-------TCE---E---ESSCCS-SCCSEEEECC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHH-HC-------CCe---E---ecHHHh-ccCCEEEEcc
Confidence            88999999999999999998 57889999999987643 2211 11       100   1   122222 2899999999


Q ss_pred             CCCcccccccCHHHHh-cCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          245 VLDKTTYHLINKERLA-TMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       245 pl~~~t~~li~~~~l~-~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      |..-.....++.+.+. .++++.+++|+...+  .+.-|.+|-+.|
T Consensus       181 p~Gm~~~~~l~~~~l~~~l~~~~~v~D~vY~P--~T~ll~~A~~~G  224 (269)
T 3phh_A          181 SASLHNELPLNKEVLKGYFKEGKLAYDLAYGF--LTPFLSLAKELK  224 (269)
T ss_dssp             TTCCCCSCSSCHHHHHHHHHHCSEEEESCCSS--CCHHHHHHHHTT
T ss_pred             cCCCCCCCCCChHHHHhhCCCCCEEEEeCCCC--chHHHHHHHHCc
Confidence            9764433356666333 677899999999887  455344454444

>2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6

Probab=97.90  E-value=5.6e-06  Score=75.99  Aligned_cols=87  Identities=14%  Similarity=0.208  Sum_probs=54.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEE-EEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .+|||||+|+||+.+|+.|+ .. .+| .+||++++.. +...+.+       +.      ...+++++++++|+|++|+
T Consensus         3 m~I~iIG~G~mG~~la~~l~-~~-~~v~~v~~~~~~~~-~~~~~~~-------g~------~~~~~~~~~~~~DvVilav   66 (276)
T 2i76_A            3 LVLNFVGTGTLTRFFLECLK-DR-YEIGYILSRSIDRA-RNLAEVY-------GG------KAATLEKHPELNGVVFVIV   66 (276)
T ss_dssp             -CCEEESCCHHHHHHHHTTC------CCCEECSSHHHH-HHHHHHT-------CC------CCCSSCCCCC---CEEECS
T ss_pred             ceEEEEeCCHHHHHHHHHHH-Hc-CcEEEEEeCCHHHH-HHHHHHc-------CC------ccCCHHHHHhcCCEEEEeC
Confidence            37999999999999999874 44 788 4899886542 2221111       11      2346677788899999999


Q ss_pred             CCCcccccccCHHHHhcC-CCCcEEEEcCCC
Q 019387          245 VLDKTTYHLINKERLATM-KKEAILVNCSRG  274 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~m-k~ga~lINvaRG  274 (342)
                      |... .     .+.+..+ ++|.++||++-+
T Consensus        67 ~~~~-~-----~~v~~~l~~~~~ivi~~s~~   91 (276)
T 2i76_A           67 PDRY-I-----KTVANHLNLGDAVLVHCSGF   91 (276)
T ss_dssp             CTTT-H-----HHHHTTTCCSSCCEEECCSS
T ss_pred             ChHH-H-----HHHHHHhccCCCEEEECCCC
Confidence            9542 2     3344444 688999999854

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=97.80  E-value=0.00013  Score=60.73  Aligned_cols=104  Identities=17%  Similarity=0.207  Sum_probs=61.5

Q ss_pred             cccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhh-ccCCCCccccccCC---HHHH-
Q 019387          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLK-ANGEQPVTWKRASS---MDEV-  233 (342)
Q Consensus       159 ~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---l~~l-  233 (342)
                      +.....+++|.|+|+|.+|+.+|+.| +..|.+|+++|++++.. +.        +. ..+...... ...+   +.+. 
T Consensus        13 ~~~~~~~~~v~IiG~G~iG~~la~~L-~~~g~~V~vid~~~~~~-~~--------~~~~~g~~~~~~-d~~~~~~l~~~~   81 (155)
T 2g1u_A           13 MSKKQKSKYIVIFGCGRLGSLIANLA-SSSGHSVVVVDKNEYAF-HR--------LNSEFSGFTVVG-DAAEFETLKECG   81 (155)
T ss_dssp             ----CCCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGG-GG--------SCTTCCSEEEES-CTTSHHHHHTTT
T ss_pred             hhcccCCCcEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HH--------HHhcCCCcEEEe-cCCCHHHHHHcC
Confidence            34566789999999999999999997 67899999999887532 11        11 111110000 1112   3333 


Q ss_pred             hhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       234 l~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      +.++|+|++++|....+.  .-......+.+...+|-..++.
T Consensus        82 ~~~ad~Vi~~~~~~~~~~--~~~~~~~~~~~~~~iv~~~~~~  121 (155)
T 2g1u_A           82 MEKADMVFAFTNDDSTNF--FISMNARYMFNVENVIARVYDP  121 (155)
T ss_dssp             GGGCSEEEECSSCHHHHH--HHHHHHHHTSCCSEEEEECSSG
T ss_pred             cccCCEEEEEeCCcHHHH--HHHHHHHHHCCCCeEEEEECCH
Confidence            678999999998533222  2223344445555666665555

>3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}

Probab=97.79  E-value=1.5e-05  Score=71.59  Aligned_cols=70  Identities=10%  Similarity=0.142  Sum_probs=54.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      ..+|||||+|.||.++|+.| +..|.+|.+|++.                                ++ +.+||  ++|+
T Consensus         6 ~mkI~IIG~G~~G~sLA~~L-~~~G~~V~~~~~~--------------------------------~~-~~~aD--ilav   49 (232)
T 3dfu_A            6 RLRVGIFDDGSSTVNMAEKL-DSVGHYVTVLHAP--------------------------------ED-IRDFE--LVVI   49 (232)
T ss_dssp             CCEEEEECCSCCCSCHHHHH-HHTTCEEEECSSG--------------------------------GG-GGGCS--EEEE
T ss_pred             CcEEEEEeeCHHHHHHHHHH-HHCCCEEEEecCH--------------------------------HH-hccCC--EEEE
Confidence            35899999999999999998 5679999998862                                11 46799  8888


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      |.. ....++ .+....+++|+++++++
T Consensus        50 P~~-ai~~vl-~~l~~~l~~g~ivvd~s   75 (232)
T 3dfu_A           50 DAH-GVEGYV-EKLSAFARRGQMFLHTS   75 (232)
T ss_dssp             CSS-CHHHHH-HHHHTTCCTTCEEEECC
T ss_pred             cHH-HHHHHH-HHHHHhcCCCCEEEEEC
Confidence            864 555555 44556789999999975

>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis}

Probab=97.79  E-value=2.8e-05  Score=72.09  Aligned_cols=116  Identities=14%  Similarity=0.111  Sum_probs=67.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcC----C-cEEEEEcCCchhHHHHHHhhhhhhhhc-cCC-CCccccccCCHHHHhhcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGF----K-MNLIYYDLYQATRLEKFVTAYGQFLKA-NGE-QPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~af----g-~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~l~~ll~~aD  238 (342)
                      .+|+|||.|+||..+|..|+++.    | .+|.+|++ + .+.+.+.+..+..... .+. ........++. +.+..+|
T Consensus         9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r-~-~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~D   85 (317)
T 2qyt_A            9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR-G-AHLEAIRAAGGLRVVTPSRDFLARPTCVTDNP-AEVGTVD   85 (317)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECC-H-HHHHHHHHHTSEEEECSSCEEEECCSEEESCH-HHHCCEE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEc-H-HHHHHHHhcCCeEEEeCCCCeEEecceEecCc-cccCCCC
Confidence            47999999999999999985431    7 89999998 4 3333322201100000 000 00001111233 4568899


Q ss_pred             EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCH-HHHHHHHHc
Q 019387          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE-VALVEHLKQ  288 (342)
Q Consensus       239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~-~aL~~aL~~  288 (342)
                      +|++|+|.. .+...+ +.....++++.++|++.-|  ++. +.|.+.+.+
T Consensus        86 ~vil~vk~~-~~~~v~-~~i~~~l~~~~~iv~~~nG--~~~~~~l~~~l~~  132 (317)
T 2qyt_A           86 YILFCTKDY-DMERGV-AEIRPMIGQNTKILPLLNG--ADIAERMRTYLPD  132 (317)
T ss_dssp             EEEECCSSS-CHHHHH-HHHGGGEEEEEEEEECSCS--SSHHHHHTTTSCT
T ss_pred             EEEEecCcc-cHHHHH-HHHHhhcCCCCEEEEccCC--CCcHHHHHHHCCC
Confidence            999999964 334433 2333456778999998766  343 455555543

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=97.76  E-value=9.3e-05  Score=69.53  Aligned_cols=143  Identities=10%  Similarity=0.062  Sum_probs=94.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCC---C-----ccccccCCHHHH
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQ---P-----VTWKRASSMDEV  233 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~---~-----~~~~~~~~l~~l  233 (342)
                      -++|+|||.|.||..+|..++ ..|.+|+.||+.++......   ...+..+.......   .     .......++++.
T Consensus         6 ~~~VaViGaG~MG~giA~~~a-~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a   84 (319)
T 3ado_A            6 AGDVLIVGSGLVGRSWAMLFA-SGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEA   84 (319)
T ss_dssp             -CEEEEECCSHHHHHHHHHHH-HTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHH
T ss_pred             CCeEEEECCcHHHHHHHHHHH-hCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhH
Confidence            468999999999999999985 67999999999876422111   11111111111111   0     012245789999


Q ss_pred             hhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          234 LREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       234 l~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      +++||+|+=++|-+-+.+.-+-++.=+.++++++|-..+.+  +....|.+++.. .=+..++=.|.+-|  |-+-+.|+
T Consensus        85 ~~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSs--l~is~ia~~~~~-p~r~ig~HffNP~~~m~LVEiv~g  161 (319)
T 3ado_A           85 VEGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSC--LLPSKLFTGLAH-VKQCIVAHPVNPPYYIPLVELVPH  161 (319)
T ss_dssp             TTTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSS--CCHHHHHTTCTT-GGGEEEEEECSSTTTCCEEEEEEC
T ss_pred             hccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhh--ccchhhhhhccC-CCcEEEecCCCCccccchHHhcCC
Confidence            99999999999988787776767766778999988766554  555777777643 44556665555544  44444444

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=97.74  E-value=2.9e-05  Score=63.73  Aligned_cols=94  Identities=14%  Similarity=0.162  Sum_probs=59.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC---HHHH-hhcCCEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADVI  240 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~l-l~~aDiV  240 (342)
                      ..++.|+|+|.+|+.+|+.| +..|.+|+++|+.++.. +...        ..+...... ...+   ++++ +.++|+|
T Consensus         7 ~~~viIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~-~~~~--------~~g~~~i~g-d~~~~~~l~~a~i~~ad~v   75 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKL-LASDIPLVVIETSRTRV-DELR--------ERGVRAVLG-NAANEEIMQLAHLECAKWL   75 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHH-HHHH--------HTTCEEEES-CTTSHHHHHHTTGGGCSEE
T ss_pred             CCCEEEECcCHHHHHHHHHH-HHCCCCEEEEECCHHHH-HHHH--------HcCCCEEEC-CCCCHHHHHhcCcccCCEE
Confidence            45799999999999999998 68899999999987542 2211        111111100 1112   2222 4689999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINv  271 (342)
                      ++++|....+..++  ..++.+.++..+|-.
T Consensus        76 i~~~~~~~~n~~~~--~~a~~~~~~~~iiar  104 (140)
T 3fwz_A           76 ILTIPNGYEAGEIV--ASARAKNPDIEIIAR  104 (140)
T ss_dssp             EECCSCHHHHHHHH--HHHHHHCSSSEEEEE
T ss_pred             EEECCChHHHHHHH--HHHHHHCCCCeEEEE
Confidence            99999655554332  345556566666543

>3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A*

Probab=97.73  E-value=9e-05  Score=71.95  Aligned_cols=100  Identities=19%  Similarity=0.266  Sum_probs=69.7

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh--HHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      .-|.||+|+|||||+=|++-|..| +.-|.+|.+--+....  ....+..     ...+     ++ ...+.+|+.++||
T Consensus        33 ~~lkgK~IaVIGyGsQG~AqAlNL-RDSGv~V~Vglr~~s~~e~~~S~~~-----A~~~-----Gf-~v~~~~eA~~~AD  100 (491)
T 3ulk_A           33 SYLQGKKVVIVGCGAQGLNQGLNM-RDSGLDISYALRKEAIAEKRASWRK-----ATEN-----GF-KVGTYEELIPQAD  100 (491)
T ss_dssp             GGGTTSEEEEESCSHHHHHHHHHH-HHTTCEEEEEECHHHHHTTCHHHHH-----HHHT-----TC-EEEEHHHHGGGCS
T ss_pred             HHHcCCEEEEeCCChHhHHHHhHH-HhcCCcEEEEeCCCCcccccchHHH-----HHHC-----CC-EecCHHHHHHhCC
Confidence            458999999999999999999998 7889999875442210  0000100     0111     12 2358999999999


Q ss_pred             EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      +|.+.+|...+ ..+. ++....||+|+.|. .+.|=
T Consensus       101 vV~~L~PD~~q-~~vy-~~I~p~lk~G~~L~-faHGF  134 (491)
T 3ulk_A          101 LVINLTPDKQH-SDVV-RTVQPLMKDGAALG-YSHGF  134 (491)
T ss_dssp             EEEECSCGGGH-HHHH-HHHGGGSCTTCEEE-ESSCH
T ss_pred             EEEEeCChhhH-HHHH-HHHHhhCCCCCEEE-ecCcc
Confidence            99999996433 3344 46889999999887 56664

>2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes}

Probab=97.71  E-value=0.0001  Score=70.76  Aligned_cols=165  Identities=14%  Similarity=0.153  Sum_probs=106.4

Q ss_pred             CeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcC
Q 019387          109 GIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF  188 (342)
Q Consensus       109 gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~af  188 (342)
                      .|++.|+ +  -..+|=-+++-++..+|                     ..|..+...+|.|+|-|..|..+|+.+ .++
T Consensus       156 ~ipvf~D-D--iqGTa~V~lAall~al~---------------------l~g~~l~d~kVVi~GAGaAG~~iA~ll-~~~  210 (398)
T 2a9f_A          156 HIPVFHD-D--QHGTAIVVLAAIFNSLK---------------------LLKKSLDEVSIVVNGGGSAGLSITRKL-LAA  210 (398)
T ss_dssp             SSCEEEH-H--HHHHHHHHHHHHHHHHH---------------------TTTCCTTSCEEEEECCSHHHHHHHHHH-HHH
T ss_pred             Ccceecc-h--hhhHHHHHHHHHHHHHH---------------------HhCCCCCccEEEEECCCHHHHHHHHHH-HHc
Confidence            5888883 2  23344455555565554                     124578899999999999999999997 688


Q ss_pred             Cc-EEEEEcCCch------hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          189 KM-NLIYYDLYQA------TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       189 g~-~V~~~d~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      |. +|+.+|++.-      ..+..+...|...   ..  .  .....+|+|+++++|+++=+-     +.++++++.++.
T Consensus       211 Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~---~~--~--~~~~~~L~eav~~ADV~IG~S-----apgl~T~EmVk~  278 (398)
T 2a9f_A          211 GATKVTVVDKFGIINEQEAAQLAPHHLDIAKV---TN--R--EFKSGTLEDALEGADIFIGVS-----APGVLKAEWISK  278 (398)
T ss_dssp             TCCEEEEEETTEECCTTCCCSCCC---CHHHH---HS--C--TTCCCSCSHHHHTTCSEEECC-----STTCCCHHHHHT
T ss_pred             CCCeEEEEECCCcccCCccccchHHHHHHhhc---cC--c--ccchhhHHHHhccCCEEEecC-----CCCCCCHHHHHh
Confidence            99 9999998741      1112222222110   00  0  112357999999999987662     369999999999


Q ss_pred             CCCCcEEEEcCCCcc-cCHHHHHHHHHcCC-ceEEEEecCCCCCCCcccccccc
Q 019387          262 MKKEAILVNCSRGPV-IDEVALVEHLKQNP-MFRVGLDVFEVTELGFSSFKHIS  313 (342)
Q Consensus       262 mk~ga~lINvaRG~~-vd~~aL~~aL~~g~-i~~aaLDV~~~EP~~~~~tPhia  313 (342)
                      |+++++++.+|.... +..++.++   .|+ |.+-+---+.++-.|+++.|-+.
T Consensus       279 Ma~~pIIfalsNPt~E~~pe~a~~---~g~~i~atGrs~~p~Q~NN~~~FPgi~  329 (398)
T 2a9f_A          279 MAARPVIFAMANPIPEIYPDEALE---AGAYIVGTGRSDFPNQINNVLAFPGIF  329 (398)
T ss_dssp             SCSSCEEEECCSSSCSSCHHHHHT---TTCSEEEESCTTSSSBCCGGGTHHHHH
T ss_pred             hCCCCEEEECCCCCccCCHHHHHH---hCCeEEEeCCCCCCCcCCceeEcchHH
Confidence            999999999998653 23333333   355 44444222333337888877663

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=97.70  E-value=0.00015  Score=58.43  Aligned_cols=95  Identities=12%  Similarity=0.197  Sum_probs=57.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCH---HHH-hhcCCEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEV-LREADVI  240 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~l-l~~aDiV  240 (342)
                      +++|+|+|+|.+|+.+|+.| ...|.+|.++|++++.. +.....+       +.... .....+.   .+. +.++|+|
T Consensus         4 ~m~i~IiG~G~iG~~~a~~L-~~~g~~v~~~d~~~~~~-~~~~~~~-------~~~~~-~~d~~~~~~l~~~~~~~~d~v   73 (140)
T 1lss_A            4 GMYIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDIC-KKASAEI-------DALVI-NGDCTKIKTLEDAGIEDADMY   73 (140)
T ss_dssp             -CEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHC-------SSEEE-ESCTTSHHHHHHTTTTTCSEE
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHhc-------CcEEE-EcCCCCHHHHHHcCcccCCEE
Confidence            46899999999999999998 56799999999876532 2221111       11000 0011122   222 5789999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINv  271 (342)
                      ++++|....+  ..-....+.++++.+++-+
T Consensus        74 i~~~~~~~~~--~~~~~~~~~~~~~~ii~~~  102 (140)
T 1lss_A           74 IAVTGKEEVN--LMSSLLAKSYGINKTIARI  102 (140)
T ss_dssp             EECCSCHHHH--HHHHHHHHHTTCCCEEEEC
T ss_pred             EEeeCCchHH--HHHHHHHHHcCCCEEEEEe
Confidence            9999854322  2223345567777666544

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=97.66  E-value=4.7e-05  Score=71.79  Aligned_cols=103  Identities=14%  Similarity=0.120  Sum_probs=64.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc-cCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      ..+|+|||.|.||..+|..|+ .-|.+|.+|++.  ...+...+ .+..... .+..........++++ +..+|+|++|
T Consensus         3 ~mkI~IiGaG~~G~~~a~~L~-~~g~~V~~~~r~--~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vila   77 (335)
T 3ghy_A            3 LTRICIVGAGAVGGYLGARLA-LAGEAINVLARG--ATLQALQT-AGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVA   77 (335)
T ss_dssp             CCCEEEESCCHHHHHHHHHHH-HTTCCEEEECCH--HHHHHHHH-TCEEEEETTEEEEECCEEESCHHH-HCCCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHH-HCCCEEEEEECh--HHHHHHHH-CCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEe
Confidence            358999999999999999985 568899999984  22222211 0000000 0000111112346666 5889999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      +|. .++...+. ..-..+++++++|.+.-|
T Consensus        78 vk~-~~~~~~~~-~l~~~l~~~~~iv~~~nG  106 (335)
T 3ghy_A           78 VKA-PALESVAA-GIAPLIGPGTCVVVAMNG  106 (335)
T ss_dssp             CCH-HHHHHHHG-GGSSSCCTTCEEEECCSS
T ss_pred             CCc-hhHHHHHH-HHHhhCCCCCEEEEECCC
Confidence            995 44444442 233456789999999888

>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*

Probab=97.65  E-value=0.00013  Score=67.40  Aligned_cols=114  Identities=18%  Similarity=0.144  Sum_probs=73.1

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .++.|+++.|+|.|.+|+.++..| ...|+ +|.+++|.++. .+...+.+..    .+  ..   ...+++++..++|+
T Consensus       122 ~~l~~k~vlvlGaGg~g~aia~~L-~~~G~~~v~v~~R~~~~-a~~la~~~~~----~~--~~---~~~~~~~l~~~aDi  190 (281)
T 3o8q_A          122 VLLKGATILLIGAGGAARGVLKPL-LDQQPASITVTNRTFAK-AEQLAELVAA----YG--EV---KAQAFEQLKQSYDV  190 (281)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HTTCCSEEEEEESSHHH-HHHHHHHHGG----GS--CE---EEEEGGGCCSCEEE
T ss_pred             CCccCCEEEEECchHHHHHHHHHH-HhcCCCeEEEEECCHHH-HHHHHHHhhc----cC--Ce---eEeeHHHhcCCCCE
Confidence            357899999999999999999998 57896 99999998754 2222222211    00  01   11244455578999


Q ss_pred             EEEcCCCCcccc-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          240 ISLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       240 V~l~~pl~~~t~-~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      |+.++|..-... -.++.   +.++++.+++++.-.+ ..+.-|.+|-+.|
T Consensus       191 IInaTp~gm~~~~~~l~~---~~l~~~~~V~DlvY~P-~~T~ll~~A~~~G  237 (281)
T 3o8q_A          191 IINSTSASLDGELPAIDP---VIFSSRSVCYDMMYGK-GYTVFNQWARQHG  237 (281)
T ss_dssp             EEECSCCCC----CSCCG---GGEEEEEEEEESCCCS-SCCHHHHHHHHTT
T ss_pred             EEEcCcCCCCCCCCCCCH---HHhCcCCEEEEecCCC-ccCHHHHHHHHCC
Confidence            999999754321 13443   4567899999998765 3344343444444

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=97.64  E-value=5.4e-05  Score=59.16  Aligned_cols=93  Identities=16%  Similarity=0.104  Sum_probs=58.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc--cccccCCHHHHhhcCCEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~aDiV  240 (342)
                      .+++|+|+|.|.||+.+++.| ...| .+|.+++++++.. +...        ..+....  ......++++++.++|+|
T Consensus         4 ~~~~v~I~G~G~iG~~~~~~l-~~~g~~~v~~~~r~~~~~-~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~d~v   73 (118)
T 3ic5_A            4 MRWNICVVGAGKIGQMIAALL-KTSSNYSVTVADHDLAAL-AVLN--------RMGVATKQVDAKDEAGLAKALGGFDAV   73 (118)
T ss_dssp             TCEEEEEECCSHHHHHHHHHH-HHCSSEEEEEEESCHHHH-HHHH--------TTTCEEEECCTTCHHHHHHHTTTCSEE
T ss_pred             CcCeEEEECCCHHHHHHHHHH-HhCCCceEEEEeCCHHHH-HHHH--------hCCCcEEEecCCCHHHHHHHHcCCCEE
Confidence            367999999999999999997 5778 8999999987542 2111        0011100  111224567788899999


Q ss_pred             EEcCCCCcccccccCHHHHhc-CCCCcEEEEcC
Q 019387          241 SLHPVLDKTTYHLINKERLAT-MKKEAILVNCS  272 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~-mk~ga~lINva  272 (342)
                      +.+.|... +     ...... .+.|...++.+
T Consensus        74 i~~~~~~~-~-----~~~~~~~~~~g~~~~~~~  100 (118)
T 3ic5_A           74 ISAAPFFL-T-----PIIAKAAKAAGAHYFDLT  100 (118)
T ss_dssp             EECSCGGG-H-----HHHHHHHHHTTCEEECCC
T ss_pred             EECCCchh-h-----HHHHHHHHHhCCCEEEec
Confidence            99997421 1     222222 24567777764

>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha}

Probab=97.62  E-value=0.0001  Score=68.97  Aligned_cols=116  Identities=18%  Similarity=0.253  Sum_probs=68.0

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc-cCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      ...++|+|||.|.||..+|..|+ .-|.+|.+| ++++. .+...+. +..... ....+.......++++ +..+|+|+
T Consensus        17 ~~~~kI~IiGaGa~G~~~a~~L~-~~G~~V~l~-~~~~~-~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vi   91 (318)
T 3hwr_A           17 FQGMKVAIMGAGAVGCYYGGMLA-RAGHEVILI-ARPQH-VQAIEAT-GLRLETQSFDEQVKVSASSDPSA-VQGADLVL   91 (318)
T ss_dssp             ---CEEEEESCSHHHHHHHHHHH-HTTCEEEEE-CCHHH-HHHHHHH-CEEEECSSCEEEECCEEESCGGG-GTTCSEEE
T ss_pred             ccCCcEEEECcCHHHHHHHHHHH-HCCCeEEEE-EcHhH-HHHHHhC-CeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEE
Confidence            34679999999999999999985 568999999 66532 2222111 000000 0000111112245554 58899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL  286 (342)
                      +++|.. +++..+ +..-..+++++++|.+.-|= -.++.+.+.+
T Consensus        92 lavk~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~  133 (318)
T 3hwr_A           92 FCVKST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLL  133 (318)
T ss_dssp             ECCCGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHC
T ss_pred             EEcccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHc
Confidence            999953 444444 23334678899999987763 2224455555

>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A

Probab=97.62  E-value=0.00076  Score=62.23  Aligned_cols=120  Identities=17%  Similarity=0.183  Sum_probs=77.3

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|+++.|+|.|.+|+.++..| ...|+ +|.+++|..++. +...+.+....   ...........++++.+.++|+|
T Consensus       124 ~l~~k~vlVlGaGG~g~aia~~L-~~~G~~~v~i~~R~~~~a-~~la~~~~~~~---~~~~i~~~~~~~l~~~l~~~DiV  198 (283)
T 3jyo_A          124 NAKLDSVVQVGAGGVGNAVAYAL-VTHGVQKLQVADLDTSRA-QALADVINNAV---GREAVVGVDARGIEDVIAAADGV  198 (283)
T ss_dssp             TCCCSEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSSHHHH-HHHHHHHHHHH---TSCCEEEECSTTHHHHHHHSSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEECCHHHH-HHHHHHHHhhc---CCceEEEcCHHHHHHHHhcCCEE
Confidence            57899999999999999999998 57898 799999987542 22222211100   00011111234788899999999


Q ss_pred             EEcCCCCccc--ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          241 SLHPVLDKTT--YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       241 ~l~~pl~~~t--~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      +.++|..-..  .-.++   .+.++++.+++++.-.+. .+.=|.+|-+.|.
T Consensus       199 InaTp~Gm~~~~~~pi~---~~~l~~~~~v~DlvY~P~-~T~ll~~A~~~G~  246 (283)
T 3jyo_A          199 VNATPMGMPAHPGTAFD---VSCLTKDHWVGDVVYMPI-ETELLKAARALGC  246 (283)
T ss_dssp             EECSSTTSTTSCSCSSC---GGGCCTTCEEEECCCSSS-SCHHHHHHHHHTC
T ss_pred             EECCCCCCCCCCCCCCC---HHHhCCCCEEEEecCCCC-CCHHHHHHHHCcC
Confidence            9999964221  11233   345778999999877653 3444555555553

>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*

Probab=97.61  E-value=0.0003  Score=65.99  Aligned_cols=121  Identities=12%  Similarity=0.104  Sum_probs=74.9

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch--hHHHHHHhhhhhhhhccCCCCcccccc---CCHHHHh
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRA---SSMDEVL  234 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~ll  234 (342)
                      ..+.||++.|+|.|.+|++++..| ...|+ +|.+++|..+  .+.++..+.+..   ..+ ........   .++.+.+
T Consensus       150 ~~l~gk~~lVlGaGG~g~aia~~L-~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~---~~~-~~~~~~~~~~~~~l~~~l  224 (315)
T 3tnl_A          150 HDIIGKKMTICGAGGAATAICIQA-ALDGVKEISIFNRKDDFYANAEKTVEKINS---KTD-CKAQLFDIEDHEQLRKEI  224 (315)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTTHHHHHHHHHHHHH---HSS-CEEEEEETTCHHHHHHHH
T ss_pred             CCccCCEEEEECCChHHHHHHHHH-HHCCCCEEEEEECCCchHHHHHHHHHHhhh---hcC-CceEEeccchHHHHHhhh
Confidence            458899999999999999999998 57899 8999999831  222222222111   001 00111112   2356778


Q ss_pred             hcCCEEEEcCCCCc--cc-ccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          235 READVISLHPVLDK--TT-YHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       235 ~~aDiV~l~~pl~~--~t-~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      .++|+|+.+.|..=  .. ...+.  ....++++.+++++.-.+. .+.=|.+|-+.|
T Consensus       225 ~~aDiIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~P~-~T~ll~~A~~~G  279 (315)
T 3tnl_A          225 AESVIFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYKPT-KTRLLEIAEEQG  279 (315)
T ss_dssp             HTCSEEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCSSS-SCHHHHHHHHTT
T ss_pred             cCCCEEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccCCC-CCHHHHHHHHCC
Confidence            89999999999642  11 11231  2345688999999987664 344344554544

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=97.60  E-value=0.00014  Score=68.00  Aligned_cols=120  Identities=16%  Similarity=0.114  Sum_probs=74.0

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc--cCCCCc-cccccCCHHHHhhcCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA--NGEQPV-TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .+|+|||.|.||..+|..|+ .-|.+|.++++.......+    .+.....  .+.... ......+.+++...+|+|++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~-~~g~~V~~~~r~~~~~i~~----~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVil   77 (320)
T 3i83_A            3 LNILVIGTGAIGSFYGALLA-KTGHCVSVVSRSDYETVKA----KGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLL   77 (320)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HTTCEEEEECSTTHHHHHH----HCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEE
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEeCChHHHHHh----CCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEE
Confidence            58999999999999999985 5689999999875321111    0000000  011000 11123566776668999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~  293 (342)
                      ++|.. ++...+ +..-..++++..+|.+.-|= -.++.|.+.+...++.+
T Consensus        78 avK~~-~~~~~l-~~l~~~l~~~t~Iv~~~nGi-~~~~~l~~~~~~~~vl~  125 (320)
T 3i83_A           78 CIKVV-EGADRV-GLLRDAVAPDTGIVLISNGI-DIEPEVAAAFPDNEVIS  125 (320)
T ss_dssp             CCCCC-TTCCHH-HHHTTSCCTTCEEEEECSSS-SCSHHHHHHSTTSCEEE
T ss_pred             ecCCC-ChHHHH-HHHHhhcCCCCEEEEeCCCC-ChHHHHHHHCCCCcEEE
Confidence            99954 344433 33345677889999987663 23466777775545443

>1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A*

Probab=97.59  E-value=0.00014  Score=66.63  Aligned_cols=114  Identities=14%  Similarity=0.117  Sum_probs=70.2

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV  240 (342)
                      .+.|++++|+|.|.+|+++|..| ...|.+|.+++|+.++ .+...+.+..    .+  ...   ..+++++. .++|+|
T Consensus       116 ~~~~~~vlvlGaGg~g~a~a~~L-~~~G~~v~v~~R~~~~-a~~l~~~~~~----~~--~~~---~~~~~~~~~~~~Div  184 (272)
T 1p77_A          116 LRPNQHVLILGAGGATKGVLLPL-LQAQQNIVLANRTFSK-TKELAERFQP----YG--NIQ---AVSMDSIPLQTYDLV  184 (272)
T ss_dssp             CCTTCEEEEECCSHHHHTTHHHH-HHTTCEEEEEESSHHH-HHHHHHHHGG----GS--CEE---EEEGGGCCCSCCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEECCHHH-HHHHHHHccc----cC--CeE---EeeHHHhccCCCCEE
Confidence            46799999999999999999998 4778999999998753 2222222211    00  000   12233332 389999


Q ss_pred             EEcCCCCccccc-ccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          241 SLHPVLDKTTYH-LINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~~pl~~~t~~-li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      +.++|......- -++.+.   ++++.+++|+.-.+..+..-+.++-+.|
T Consensus       185 In~t~~~~~~~~~~i~~~~---l~~~~~v~D~~y~p~~~t~ll~~a~~~G  231 (272)
T 1p77_A          185 INATSAGLSGGTASVDAEI---LKLGSAFYDMQYAKGTDTPFIALCKSLG  231 (272)
T ss_dssp             EECCCC-------CCCHHH---HHHCSCEEESCCCTTSCCHHHHHHHHTT
T ss_pred             EECCCCCCCCCCCCCCHHH---cCCCCEEEEeeCCCCcCCHHHHHHHHcC
Confidence            999997543110 134333   3578899999887655355444444444

>1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5

Probab=97.59  E-value=0.00041  Score=63.37  Aligned_cols=113  Identities=15%  Similarity=0.100  Sum_probs=70.4

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV  240 (342)
                      .+.|+++.|+|.|.+|+.+|+.| ...|.+|++++++.+. .+...+.+..    .+  ...   ..+++++. .++|+|
T Consensus       116 ~l~~k~vlViGaGg~g~a~a~~L-~~~G~~V~v~~R~~~~-~~~la~~~~~----~~--~~~---~~~~~~~~~~~~Div  184 (271)
T 1nyt_A          116 IRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSR-AEELAKLFAH----TG--SIQ---ALSMDELEGHEFDLI  184 (271)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHH-HHHHHHHTGG----GS--SEE---ECCSGGGTTCCCSEE
T ss_pred             CcCCCEEEEECCcHHHHHHHHHH-HHcCCEEEEEECCHHH-HHHHHHHhhc----cC--Cee---EecHHHhccCCCCEE
Confidence            46799999999999999999998 5788999999998653 2222222211    00  010   11223333 589999


Q ss_pred             EEcCCCCcccc-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          241 SLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~~pl~~~t~-~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      +.++|...... .-+..   ..+++|.+++|+.-.+... .-+.++-+.|
T Consensus       185 Vn~t~~~~~~~~~~i~~---~~l~~~~~v~D~~y~p~~t-~~~~~a~~~G  230 (271)
T 1nyt_A          185 INATSSGISGDIPAIPS---SLIHPGIYCYDMFYQKGKT-PFLAWCEQRG  230 (271)
T ss_dssp             EECCSCGGGTCCCCCCG---GGCCTTCEEEESCCCSSCC-HHHHHHHHTT
T ss_pred             EECCCCCCCCCCCCCCH---HHcCCCCEEEEeccCCcCC-HHHHHHHHcC
Confidence            99998654311 01333   2357899999998865333 3333444444

>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*

Probab=97.57  E-value=0.00032  Score=64.97  Aligned_cols=168  Identities=18%  Similarity=0.173  Sum_probs=104.8

Q ss_pred             HHHHhCCCeEEEecCCCCCCCHHHHHHHhC-----CCceEEEecCC--CCccHHH-HHHhhccCCceEEEccccCCccCh
Q 019387           31 NLLIEQDCRVEICTQKKTILSVEDIIALIG-----DKCDGVIGQLT--EDWGETL-FAALSRAGGKAFSNMAVGYNNVDV  102 (342)
Q Consensus        31 ~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-----~~~d~vi~~~~--~~~~~e~-l~~l~~l~~k~i~~~~~G~d~id~  102 (342)
                      +.-++.|.+.+....++ ..+++|+.+.+.     .+.++|+++.+  ..++++. ++...-         .--+|.+--
T Consensus        76 k~c~~vGi~s~~~~lp~-~~se~ell~~I~~LN~D~~V~GIlVQlPLP~hid~~~i~~~I~p---------~KDVDG~hp  145 (303)
T 4b4u_A           76 NACRRVGMDSLKIELPQ-ETTTEQLLAEIEKLNANPDVHGILLQHPVPAQIDERACFDAISL---------AKDVDGVTC  145 (303)
T ss_dssp             HHHHHTTCEEEEEEECT-TCCHHHHHHHHHHHHTCTTCCEEEECSSCCTTSCHHHHHHHSCG---------GGCTTCCCH
T ss_pred             HHHHHcCCeEEEEecCc-cCCHHHHHHHHHHhcCCCCccEEEEeCCCccccChHHHHhccCc---------ccccCccCc
Confidence            34456777776655443 357888877653     25789999854  3455443 333221         113343321


Q ss_pred             hHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHH-HHHHH
Q 019387          103 NAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRI-GSAYA  181 (342)
Q Consensus       103 ~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~I-G~~vA  181 (342)
                      ...   |-...+.++ ....++.-++    .++++                     .+.++.||++.|||-++| |+++|
T Consensus       146 ~N~---G~L~~g~~~-~~PcTp~gv~----~lL~~---------------------~~i~l~Gk~vvViGRS~iVGkPla  196 (303)
T 4b4u_A          146 LGF---GRMAMGEAA-YGSATPAGIM----TILKE---------------------NNIEIAGKHAVVVGRSAILGKPMA  196 (303)
T ss_dssp             HHH---HHHHTTCCC-CCCHHHHHHH----HHHHH---------------------TTCCCTTCEEEEECCCTTTHHHHH
T ss_pred             chH---HHhcCCCCc-ccCccHHHHH----HHHHH---------------------HCCCCCCCEEEEEeccccccchHH
Confidence            111   111222333 2333443222    22221                     135799999999998875 99999


Q ss_pred             HHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       182 ~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      .+| ..-++.|+....+                            ..+|.+..++||+|+.++..    .++|..+   +
T Consensus       197 ~LL-~~~~ATVTi~Hs~----------------------------T~dl~~~~~~ADIvV~A~G~----p~~i~~d---~  240 (303)
T 4b4u_A          197 MML-LQANATVTICHSR----------------------------TQNLPELVKQADIIVGAVGK----AELIQKD---W  240 (303)
T ss_dssp             HHH-HHTTCEEEEECTT----------------------------CSSHHHHHHTCSEEEECSCS----TTCBCGG---G
T ss_pred             HHH-HhcCCEEEEecCC----------------------------CCCHHHHhhcCCeEEeccCC----CCccccc---c
Confidence            987 5779999877432                            24789999999999999863    4688876   4


Q ss_pred             CCCCcEEEEcCC
Q 019387          262 MKKEAILVNCSR  273 (342)
Q Consensus       262 mk~ga~lINvaR  273 (342)
                      .|+|+++||+|-
T Consensus       241 vk~GavVIDVGi  252 (303)
T 4b4u_A          241 IKQGAVVVDAGF  252 (303)
T ss_dssp             SCTTCEEEECCC
T ss_pred             ccCCCEEEEece
Confidence            689999999984

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=97.53  E-value=9.9e-05  Score=59.67  Aligned_cols=100  Identities=12%  Similarity=0.207  Sum_probs=58.5

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC---HHHH-hhcCC
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREAD  238 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~l-l~~aD  238 (342)
                      +.+++|+|+|.|.+|+.+++.| ...|.+|+++|+.++.. +..        ...+.... .....+   ++++ +.++|
T Consensus         4 ~~~~~v~I~G~G~iG~~~a~~l-~~~g~~v~~~d~~~~~~-~~~--------~~~~~~~~-~~d~~~~~~l~~~~~~~~d   72 (144)
T 2hmt_A            4 IKNKQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKV-NAY--------ASYATHAV-IANATEENELLSLGIRNFE   72 (144)
T ss_dssp             --CCSEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHH-HTT--------TTTCSEEE-ECCTTCHHHHHTTTGGGCS
T ss_pred             CcCCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH--------HHhCCEEE-EeCCCCHHHHHhcCCCCCC
Confidence            4578899999999999999997 57899999999876432 111        11111100 001122   3333 57899


Q ss_pred             EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      +|+.++|...++ .+.-....+.+.+. .+|-...+.
T Consensus        73 ~vi~~~~~~~~~-~~~~~~~~~~~~~~-~ii~~~~~~  107 (144)
T 2hmt_A           73 YVIVAIGANIQA-STLTTLLLKELDIP-NIWVKAQNY  107 (144)
T ss_dssp             EEEECCCSCHHH-HHHHHHHHHHTTCS-EEEEECCSH
T ss_pred             EEEECCCCchHH-HHHHHHHHHHcCCC-eEEEEeCCH
Confidence            999999864221 22223344556666 555544443

>2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A*

Probab=97.51  E-value=0.00021  Score=69.88  Aligned_cols=139  Identities=18%  Similarity=0.155  Sum_probs=90.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc---EEEEEc----CC----chhH---HHHHHhhhhhhhhccCCCCccccc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYD----LY----QATR---LEKFVTAYGQFLKANGEQPVTWKR  226 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~---~V~~~d----~~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~  226 (342)
                      ..+.++++.|+|.|..|+.+++.| ...|+   +|+++|    +.    ....   ...+...+.   .. .  .. ...
T Consensus       182 ~~l~~~rvlvlGAGgAg~aia~~L-~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a---~~-~--~~-~~~  253 (439)
T 2dvm_A          182 KKISEITLALFGAGAAGFATLRIL-TEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLL---KK-T--NG-ENI  253 (439)
T ss_dssp             CCTTTCCEEEECCSHHHHHHHHHH-HHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHH---TT-S--CT-TCC
T ss_pred             CCccCCEEEEECccHHHHHHHHHH-HHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHh---hc-c--cc-ccc
Confidence            467899999999999999999997 57898   799999    66    2111   111101110   00 0  00 001


Q ss_pred             cCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE-EEEecCCCCCCC
Q 019387          227 ASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR-VGLDVFEVTELG  305 (342)
Q Consensus       227 ~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~-aaLDV~~~EP~~  305 (342)
                      ..++.+.+.++|+|+.+.|..   .+++.++.++.|+++.++++++..  ..|.-+.+|.+.|.-.- -|+..+...-.|
T Consensus       254 ~~~L~e~l~~aDVlInaT~~~---~G~~~~e~v~~m~~~~iVfDLynP--~~t~~~~~A~~~G~~ivatG~~ml~~Q~nn  328 (439)
T 2dvm_A          254 EGGPQEALKDADVLISFTRPG---PGVIKPQWIEKMNEDAIVFPLANP--VPEILPEEAKKAGARIVATGRSDYPNQINN  328 (439)
T ss_dssp             CSSHHHHHTTCSEEEECSCCC---SSSSCHHHHTTSCTTCEEEECCSS--SCSSCHHHHHHHTCSEECBSCSSSSSBCCG
T ss_pred             cccHHHHhccCCEEEEcCCCc---cCCCChHHHHhcCCCCEEEECCCC--CCcchHHHHHHcCCeEEcCCCchhHHHHHH
Confidence            357899999999999998852   266777788999999999999543  34555555555554222 244444443367


Q ss_pred             ccccccc
Q 019387          306 FSSFKHI  312 (342)
Q Consensus       306 ~~~tPhi  312 (342)
                      .+..|-+
T Consensus       329 ~~~FPGi  335 (439)
T 2dvm_A          329 LLGFPGI  335 (439)
T ss_dssp             GGTHHHH
T ss_pred             HhcccCc
Confidence            7777765

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=97.50  E-value=0.00038  Score=64.77  Aligned_cols=120  Identities=13%  Similarity=0.147  Sum_probs=72.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc-cCCCCc-cccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA-NGEQPV-TWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      ++|+|||.|+||..+|..|+ .-|.+|.+|++...   +... ..+..... .+.... ......+.++ +..+|+|+++
T Consensus         3 mkI~IiGaGaiG~~~a~~L~-~~g~~V~~~~r~~~---~~i~-~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vila   76 (312)
T 3hn2_A            3 LRIAIVGAGALGLYYGALLQ-RSGEDVHFLLRRDY---EAIA-GNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVG   76 (312)
T ss_dssp             -CEEEECCSTTHHHHHHHHH-HTSCCEEEECSTTH---HHHH-HTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEEC
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCeEEEEEcCcH---HHHH-hCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEe
Confidence            57999999999999999985 56889999998752   2211 11100000 010000 1112245555 5789999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~a  294 (342)
                      +|.. ++...+ +..-..++++..+|.+.-|= -.++.|.+.+...++.++
T Consensus        77 vk~~-~~~~~l-~~l~~~l~~~~~iv~l~nGi-~~~~~l~~~~~~~~v~~~  124 (312)
T 3hn2_A           77 LKTF-ANSRYE-ELIRPLVEEGTQILTLQNGL-GNEEALATLFGAERIIGG  124 (312)
T ss_dssp             CCGG-GGGGHH-HHHGGGCCTTCEEEECCSSS-SHHHHHHHHTCGGGEEEE
T ss_pred             cCCC-CcHHHH-HHHHhhcCCCCEEEEecCCC-CcHHHHHHHCCCCcEEEE
Confidence            9853 334333 23334577899999987762 225667777755555443

>3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida}

Probab=97.48  E-value=0.00081  Score=61.68  Aligned_cols=113  Identities=12%  Similarity=0.028  Sum_probs=72.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READ  238 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aD  238 (342)
                      ..+.||++.|+|.|.+|++++..| ...|+ +|.+++|+.++ .+...+.+..       .....   .+++++- .++|
T Consensus       116 ~~l~~k~~lvlGaGg~~~aia~~L-~~~G~~~v~i~~R~~~~-a~~la~~~~~-------~~~~~---~~~~~l~~~~~D  183 (272)
T 3pwz_A          116 EPLRNRRVLLLGAGGAVRGALLPF-LQAGPSELVIANRDMAK-ALALRNELDH-------SRLRI---SRYEALEGQSFD  183 (272)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTCCSEEEEECSCHHH-HHHHHHHHCC-------TTEEE---ECSGGGTTCCCS
T ss_pred             CCccCCEEEEECccHHHHHHHHHH-HHcCCCEEEEEeCCHHH-HHHHHHHhcc-------CCeeE---eeHHHhcccCCC
Confidence            457899999999999999999998 57896 99999998754 2222222210       01111   1223332 7899


Q ss_pred             EEEEcCCCCcccc-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          239 VISLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       239 iV~l~~pl~~~t~-~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      +|+.++|..-... -.+..   +.++++.+++++.-.+. .+.-|.+|-+.|
T Consensus       184 ivInaTp~gm~~~~~~i~~---~~l~~~~~V~DlvY~P~-~T~ll~~A~~~G  231 (272)
T 3pwz_A          184 IVVNATSASLTADLPPLPA---DVLGEAALAYELAYGKG-LTPFLRLAREQG  231 (272)
T ss_dssp             EEEECSSGGGGTCCCCCCG---GGGTTCSEEEESSCSCC-SCHHHHHHHHHS
T ss_pred             EEEECCCCCCCCCCCCCCH---HHhCcCCEEEEeecCCC-CCHHHHHHHHCC
Confidence            9999998643211 13443   35678999999977654 344344454444

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=97.48  E-value=9.3e-05  Score=60.33  Aligned_cols=95  Identities=15%  Similarity=0.143  Sum_probs=56.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC---HHHH-hhcCCE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEV-LREADV  239 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~l-l~~aDi  239 (342)
                      .++++.|+|+|.+|+.+|+.| ...|.+|+++|+.++.. +....        .+...... ...+   ++++ +.++|+
T Consensus         5 ~~~~v~I~G~G~iG~~la~~L-~~~g~~V~~id~~~~~~-~~~~~--------~~~~~~~g-d~~~~~~l~~~~~~~~d~   73 (141)
T 3llv_A            5 GRYEYIVIGSEAAGVGLVREL-TAAGKKVLAVDKSKEKI-ELLED--------EGFDAVIA-DPTDESFYRSLDLEGVSA   73 (141)
T ss_dssp             -CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEESCHHHH-HHHHH--------TTCEEEEC-CTTCHHHHHHSCCTTCSE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEECCHHHH-HHHHH--------CCCcEEEC-CCCCHHHHHhCCcccCCE
Confidence            357899999999999999998 57899999999987542 22111        11110000 1112   2222 467999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINv  271 (342)
                      |++++|..  ..++.-....+.+....+++-+
T Consensus        74 vi~~~~~~--~~n~~~~~~a~~~~~~~iia~~  103 (141)
T 3llv_A           74 VLITGSDD--EFNLKILKALRSVSDVYAIVRV  103 (141)
T ss_dssp             EEECCSCH--HHHHHHHHHHHHHCCCCEEEEE
T ss_pred             EEEecCCH--HHHHHHHHHHHHhCCceEEEEE
Confidence            99999832  2333334444445534444433

>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*

Probab=97.45  E-value=0.00031  Score=67.73  Aligned_cols=103  Identities=14%  Similarity=0.054  Sum_probs=61.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEc---CCchhHHHHHHhhhhhhhh--cc-C--CC-Ccccc-ccCCHHHHhh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD---LYQATRLEKFVTAYGQFLK--AN-G--EQ-PVTWK-RASSMDEVLR  235 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d---~~~~~~~~~~~~~~~~~~~--~~-~--~~-~~~~~-~~~~l~~ll~  235 (342)
                      .+|+|||.|.||..+|..|++.-|.+|.+|+   ++++. .+......+..+.  .. +  .. ..... ...++++++.
T Consensus         3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   81 (404)
T 3c7a_A            3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAER-WTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAIS   81 (404)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHH-HHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHT
T ss_pred             ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHH-HHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhC
Confidence            3799999999999999998432489999999   44322 2221110000000  00 0  00 00111 2357888899


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINv  271 (342)
                      .+|+|++++|.. ..+.++ ++....+++++++|+.
T Consensus        82 ~aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~  115 (404)
T 3c7a_A           82 GADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL  115 (404)
T ss_dssp             TCSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred             CCCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence            999999999953 333333 2333456788999984

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=97.45  E-value=0.0002  Score=59.28  Aligned_cols=102  Identities=8%  Similarity=0.012  Sum_probs=60.2

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcc--ccccCCHHHH-hhcCCEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEV-LREADVIS  241 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l-l~~aDiV~  241 (342)
                      ++++.|+|+|.+|+.+++.| ...|.+|.++|+.+..+.+.....+     ..+.....  ......++++ +.++|.|+
T Consensus         3 ~~~vlI~G~G~vG~~la~~L-~~~g~~V~vid~~~~~~~~~~~~~~-----~~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (153)
T 1id1_A            3 KDHFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRCRAIL   76 (153)
T ss_dssp             CSCEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTCSEEE
T ss_pred             CCcEEEECCCHHHHHHHHHH-HHCCCCEEEEECCChHHHHHHHHhh-----cCCCeEEEcCCCCHHHHHHcChhhCCEEE
Confidence            46799999999999999998 6789999999987533222211111     00111000  0011235554 78999999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      ++++..+  .++.-....+.+.+...+|...++
T Consensus        77 ~~~~~d~--~n~~~~~~a~~~~~~~~ii~~~~~  107 (153)
T 1id1_A           77 ALSDNDA--DNAFVVLSAKDMSSDVKTVLAVSD  107 (153)
T ss_dssp             ECSSCHH--HHHHHHHHHHHHTSSSCEEEECSS
T ss_pred             EecCChH--HHHHHHHHHHHHCCCCEEEEEECC
Confidence            9998543  334434455566444445544333

>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A

Probab=97.40  E-value=0.00027  Score=58.33  Aligned_cols=105  Identities=11%  Similarity=0.138  Sum_probs=70.4

Q ss_pred             CCCeEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       164 ~gktvgIvG~----G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .-++|+|||.    |++|..+++.| +..|.+|+..++.....                 .-.+...+.+++++-...|+
T Consensus        12 ~p~~vaVvGas~~~g~~G~~~~~~l-~~~G~~v~~vnp~~~~~-----------------~i~G~~~~~sl~el~~~vDl   73 (140)
T 1iuk_A           12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE-----------------ELFGEEAVASLLDLKEPVDI   73 (140)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS-----------------EETTEECBSSGGGCCSCCSE
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHH-HHCCCEEEEeCCCcccC-----------------cCCCEEecCCHHHCCCCCCE
Confidence            3568999999    89999999997 67888876666542010                 00123345688888888999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~  293 (342)
                      +++++|. +....++.+ ..+ ...++++++.+-.    ++++.+..++..+.-
T Consensus        74 avi~vp~-~~~~~v~~~-~~~-~gi~~i~~~~g~~----~~~~~~~a~~~Gir~  120 (140)
T 1iuk_A           74 LDVFRPP-SALMDHLPE-VLA-LRPGLVWLQSGIR----HPEFEKALKEAGIPV  120 (140)
T ss_dssp             EEECSCH-HHHTTTHHH-HHH-HCCSCEEECTTCC----CHHHHHHHHHTTCCE
T ss_pred             EEEEeCH-HHHHHHHHH-HHH-cCCCEEEEcCCcC----HHHHHHHHHHcCCEE
Confidence            9999996 566666643 333 3334666654332    467777777766653

>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*

Probab=97.37  E-value=0.00046  Score=64.39  Aligned_cols=103  Identities=17%  Similarity=0.216  Sum_probs=60.9

Q ss_pred             eEEEEecCHHHHHHHHHHHhc-CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~a-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|+|+|.|.+|..+|..|++. +|.+|..+|+.++.. +.............. .........++++ +++||+|++++|
T Consensus         2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~-~~~~~~l~~~~~~~~-~~~~i~~t~d~~~-l~~aDvViiav~   78 (310)
T 1guz_A            2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIP-QGKALDMYESGPVGL-FDTKVTGSNDYAD-TANSDIVIITAG   78 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHH-HHHHHHHHTTHHHHT-CCCEEEEESCGGG-GTTCSEEEECCS
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHH-HHHHHhHHhhhhccc-CCcEEEECCCHHH-HCCCCEEEEeCC
Confidence            799999999999999988653 688999999986432 221110000000000 1111222356666 899999999998


Q ss_pred             CCcccccc-------cC----HH---HHhcCCCCcEEEEcCC
Q 019387          246 LDKTTYHL-------IN----KE---RLATMKKEAILVNCSR  273 (342)
Q Consensus       246 l~~~t~~l-------i~----~~---~l~~mk~ga~lINvaR  273 (342)
                      . +...+.       .|    ++   .+....+++.+++++-
T Consensus        79 ~-p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tN  119 (310)
T 1guz_A           79 L-PRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (310)
T ss_dssp             C-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             C-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcC
Confidence            4 333332       11    11   2222357888888843

>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}

Probab=97.36  E-value=0.00082  Score=62.19  Aligned_cols=107  Identities=18%  Similarity=0.280  Sum_probs=65.5

Q ss_pred             CeEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~-vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|||||+|.||+. .++.|.+.-++++. ++|+.++. .+.+.+.+       +     ...+.++++++.+.|+|++|
T Consensus         7 ~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~a~~~-------~-----~~~~~~~~~ll~~~D~V~i~   73 (308)
T 3uuw_A            7 IKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVK-REKICSDY-------R-----IMPFDSIESLAKKCDCIFLH   73 (308)
T ss_dssp             CEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHH-HHHHHHHH-------T-----CCBCSCHHHHHTTCSEEEEC
T ss_pred             CcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHH-HHHHHHHc-------C-----CCCcCCHHHHHhcCCEEEEe
Confidence            58999999999997 88876433578887 68988753 23222222       1     11257999999999999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCc-EEEE-cCCCcccCHHHHHHHHHcCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEA-ILVN-CSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga-~lIN-vaRG~~vd~~aL~~aL~~g~  290 (342)
                      +|...+  .-+   ....++.|. +|+. -.--.+-+.+.|.++.++..
T Consensus        74 tp~~~h--~~~---~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~g  117 (308)
T 3uuw_A           74 SSTETH--YEI---IKILLNLGVHVYVDKPLASTVSQGEELIELSTKKN  117 (308)
T ss_dssp             CCGGGH--HHH---HHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHHHT
T ss_pred             CCcHhH--HHH---HHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHHcC
Confidence            994322  212   222334443 4443 22223344555666665533

>1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1

Probab=97.36  E-value=0.042  Score=51.47  Aligned_cols=115  Identities=18%  Similarity=0.237  Sum_probs=75.7

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .+.|.+|+++|=|  ++.++.+..+ ..||++|.+..|..-...+...+.........|   ..+....+++++++++|+
T Consensus       164 ~l~gl~va~vGD~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  239 (325)
T 1vlv_A          164 RLKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEIVKETD---GSVSFTSNLEEALAGADV  239 (325)
T ss_dssp             CSTTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC---CEEEEESCHHHHHTTCSE
T ss_pred             CcCCcEEEEECCCCcCcHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHHccCCE
Confidence            3789999999986  9999999987 579999999887542211111110000011111   123345789999999999


Q ss_pred             EEEcCCC----C---cc-----cccccCHHHHhcC-CCCcEEEEcC---CCcccCHH
Q 019387          240 ISLHPVL----D---KT-----TYHLINKERLATM-KKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       240 V~l~~pl----~---~~-----t~~li~~~~l~~m-k~ga~lINva---RG~~vd~~  280 (342)
                      |..-.-.    .   ++     ...-++.+.++.+ |++++|.-+.   ||.=|+.+
T Consensus       240 vyt~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~k~dai~mH~LP~~Rg~EI~~e  296 (325)
T 1vlv_A          240 VYTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYE  296 (325)
T ss_dssp             EEECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHH
T ss_pred             EEeccccccccccchHhHHHHHhhcCCCHHHHHhccCCCeEEECCCCCCCCcccCHH
Confidence            9774331    0   11     2356789999999 9999998875   56666654

>1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A

Probab=97.36  E-value=0.04  Score=51.41  Aligned_cols=115  Identities=16%  Similarity=0.191  Sum_probs=75.9

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|.+|++||= +++.++.+..+ ..||++|.+..|..-...+...+.........|   ..+....++++.++++|+|
T Consensus       152 ~l~gl~va~vGD~~rva~Sl~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~~~~~~d~~eav~~aDvv  227 (315)
T 1pvv_A          152 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQNAAESG---GSFELLHDPVKAVKDADVI  227 (315)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSEE
T ss_pred             CcCCcEEEEECCCcchHHHHHHHH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhCCCCEE
Confidence            378999999997 89999999986 579999999887542111111110000001111   1233457899999999999


Q ss_pred             EEcCCC----C---cc-----cccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          241 SLHPVL----D---KT-----TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       241 ~l~~pl----~---~~-----t~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      ..-.-.    .   ++     ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       228 y~~~w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~lP~~Rg~EI~~e  282 (315)
T 1pvv_A          228 YTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDD  282 (315)
T ss_dssp             EECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             EEcceeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCCCCCCCCccCHH
Confidence            774331    0   11     13567899999999999999875   67666654

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=97.35  E-value=0.00077  Score=66.00  Aligned_cols=122  Identities=15%  Similarity=0.110  Sum_probs=72.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh--------hhhhhccCCCCccccccCCHHHHhh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLR  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~ll~  235 (342)
                      +-.+|+|||+|-+|-.+|..|+ ..|.+|++||..++. .+.....-        .+++.+. ...-.....++.++.++
T Consensus        20 ~m~~IaViGlGYVGLp~A~~~A-~~G~~V~g~Did~~k-V~~ln~G~~pi~Epgl~ell~~~-~~~g~l~~tt~~~~ai~   96 (444)
T 3vtf_A           20 HMASLSVLGLGYVGVVHAVGFA-LLGHRVVGYDVNPSI-VERLRAGRPHIYEPGLEEALGRA-LSSGRLSFAESAEEAVA   96 (444)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCEEEEECSCHHH-HHHHHTTCCSSCCTTHHHHHHHH-HHTTCEEECSSHHHHHH
T ss_pred             CCCEEEEEccCHHHHHHHHHHH-hCCCcEEEEECCHHH-HHHHHCCCCCCCCCCHHHHHHHH-HHcCCeeEEcCHHHHHh
Confidence            4568999999999999999985 568999999998753 33322110        0000000 00001123467888899


Q ss_pred             cCCEEEEcCCCCcccccccC--------HHHHhcC---CCCcEEEEcCCCcccCHHHHH-HHHHc
Q 019387          236 EADVISLHPVLDKTTYHLIN--------KERLATM---KKEAILVNCSRGPVIDEVALV-EHLKQ  288 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~--------~~~l~~m---k~ga~lINvaRG~~vd~~aL~-~aL~~  288 (342)
                      .||++++|+|......+-.|        +..-..|   .+|.++|.-|.-.+=..+.+. ..|++
T Consensus        97 ~ad~~~I~VpTP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~  161 (444)
T 3vtf_A           97 ATDATFIAVGTPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAE  161 (444)
T ss_dssp             TSSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHT
T ss_pred             cCCceEEEecCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHH
Confidence            99999999984322222222        1222234   368899997776654444443 34443

>3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A

Probab=97.34  E-value=0.016  Score=53.83  Aligned_cols=99  Identities=25%  Similarity=0.353  Sum_probs=69.3

Q ss_pred             ccCCCeEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~L~gktvgIvG~G---~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      .+.|.+|++||=|   ++.++.+..+ ..||++|.+..|..-.. +             . ...+  ...+++++++++|
T Consensus       144 ~l~glkva~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~-~-------------~-~~~g--~~~d~~eav~~aD  205 (304)
T 3r7f_A          144 TFKGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQD-E-------------E-NTFG--TYVSMDEAVESSD  205 (304)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGSC-T-------------T-CSSC--EECCHHHHHHHCS
T ss_pred             CCCCCEEEEEcCCCCcchHHHHHHHH-HHcCCEEEEECCCccCc-c-------------h-hhcC--ccCCHHHHhCCCC
Confidence            3789999999975   7999999986 57999999987743111 0             0 0011  2358999999999


Q ss_pred             EEEEcCCCCcc-----------cccccCHHHHhcCCCCcEEEEcC---CCcccC
Q 019387          239 VISLHPVLDKT-----------TYHLINKERLATMKKEAILVNCS---RGPVID  278 (342)
Q Consensus       239 iV~l~~pl~~~-----------t~~li~~~~l~~mk~ga~lINva---RG~~vd  278 (342)
                      +|..-.-..+.           ...-++.+.++.+|++++|.-+.   ||.=|+
T Consensus       206 vvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mHclP~~Rg~EI~  259 (304)
T 3r7f_A          206 VVMLLRIQNERHQSAVSQEGYLNKYGLTVERAERMKRHAIIMHPAPVNRGVEID  259 (304)
T ss_dssp             EEEECCCCTTTCCSSCCSTTHHHHHSBCHHHHTTSCTTCEEECCSCCCBTTTBC
T ss_pred             EEEeccchhhccccchhHHHHhCCCccCHHHHhhcCCCCEEECCCCCCCCceeC
Confidence            99874322111           12447889999999999998875   554333

>1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A*

Probab=97.32  E-value=0.018  Score=54.18  Aligned_cols=193  Identities=15%  Similarity=0.144  Sum_probs=110.7

Q ss_pred             HHHHHHhCCCeEEEecCCCCCC----CHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhH
Q 019387           29 WINLLIEQDCRVEICTQKKTIL----SVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (342)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~~~~~----~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~  104 (342)
                      |-.+..+.|.++......+...    +-+|....+..=+|+|+.+..   ..+.+..                      .
T Consensus        62 FE~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvLs~~~D~IviR~~---~~~~~~~----------------------l  116 (333)
T 1duv_G           62 FEVAAYDQGARVTYLGPSGSQIGHKESIKDTARVLGRMYDGIQYRGY---GQEIVET----------------------L  116 (333)
T ss_dssp             HHHHHHHTTCEEEEECSSSSCBTTTBCHHHHHHHHTTTCSEEEEECS---CHHHHHH----------------------H
T ss_pred             HHHHHHHcCCeEEEECCccccCcCCCcHHHHHHHHHHhCCEEEEEcC---CchHHHH----------------------H
Confidence            4445566777777665443222    334444444433566666532   2222222                      2


Q ss_pred             HHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC--HHHHHHHH
Q 019387          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYAR  182 (342)
Q Consensus       105 ~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G--~IG~~vA~  182 (342)
                      ++-.+|+|.|.-+....++-  +++=++.+.+++                    .|..+.|.+|++||=|  +++++.+.
T Consensus       117 A~~~~vPVINa~~~~~HPtQ--~LaDl~Ti~e~~--------------------~g~~l~gl~ia~vGD~~~~va~Sl~~  174 (333)
T 1duv_G          117 AEYASVPVWNGLTNEFHPTQ--LLADLLTMQEHL--------------------PGKAFNEMTLVYAGDARNNMGNSMLE  174 (333)
T ss_dssp             HHHHSSCEEESCCSSCCHHH--HHHHHHHHHHHS--------------------TTCCGGGCEEEEESCTTSHHHHHHHH
T ss_pred             HHhCCCCeEcCCCCCCCchH--HHHHHHHHHHHh--------------------cCCCCCCcEEEEECCCccchHHHHHH
Confidence            33346999997765444432  222233332210                    1224789999999986  99999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC--Ccc-----------
Q 019387          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL--DKT-----------  249 (342)
Q Consensus       183 ~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl--~~~-----------  249 (342)
                      .+ ..||++|.+..|..-...+...+.........|   ..+....++++.++++|+|..-.-.  ..+           
T Consensus       175 ~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~~  250 (333)
T 1duv_G          175 AA-ALTGLDLRLVAPQACWPEAALVTECRALAQQNG---GNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALL  250 (333)
T ss_dssp             HH-HHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTT---CEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHH
T ss_pred             HH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHHh
Confidence            86 578999999887542211111110000111112   1233457899999999999774331  110           


Q ss_pred             cccccCHHHHhcC-CCCcEEEEcC
Q 019387          250 TYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       250 t~~li~~~~l~~m-k~ga~lINva  272 (342)
                      ...-++.+.++.+ |++++|.-+.
T Consensus       251 ~~y~v~~~ll~~a~~~~ai~mHcL  274 (333)
T 1duv_G          251 REYQVNSKMMQLTGNPEVKFLHCL  274 (333)
T ss_dssp             GGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             hccccCHHHHHhccCCCcEEECCC
Confidence            2356789999999 9999998874

>1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5

Probab=97.32  E-value=0.00061  Score=62.72  Aligned_cols=117  Identities=17%  Similarity=0.193  Sum_probs=71.0

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .+.|+++.|+|.|.||+++|+.| ...| +|++++++.+. .+...+.+.....  ....... ...++.+.+.++|+|+
T Consensus       125 ~l~~k~vlV~GaGgiG~aia~~L-~~~G-~V~v~~r~~~~-~~~l~~~~~~~~~--~~~~~~~-d~~~~~~~~~~~DilV  198 (287)
T 1nvt_A          125 RVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEK-AEALAKEIAEKLN--KKFGEEV-KFSGLDVDLDGVDIII  198 (287)
T ss_dssp             CCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHH-HHHHHHHHHHHHT--CCHHHHE-EEECTTCCCTTCCEEE
T ss_pred             CcCCCEEEEECchHHHHHHHHHH-HHCC-CEEEEECCHHH-HHHHHHHHhhhcc--cccceeE-EEeeHHHhhCCCCEEE
Confidence            47799999999999999999998 5789 99999998643 2222222111000  0000000 0112345567899999


Q ss_pred             EcCCCCcccc---cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          242 LHPVLDKTTY---HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       242 l~~pl~~~t~---~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      .+.|......   ..+.  ..+.++++++++|+.-.+.. .. |.+..++
T Consensus       199 n~ag~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~p~~-t~-ll~~a~~  244 (287)
T 1nvt_A          199 NATPIGMYPNIDVEPIV--KAEKLREDMVVMDLIYNPLE-TV-LLKEAKK  244 (287)
T ss_dssp             ECSCTTCTTCCSSCCSS--CSTTCCSSSEEEECCCSSSS-CH-HHHHHHT
T ss_pred             ECCCCCCCCCCCCCCCC--CHHHcCCCCEEEEeeeCCcc-CH-HHHHHHH
Confidence            9998653211   1120  13568899999999875433 33 5554444

>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*

Probab=97.30  E-value=0.0016  Score=60.87  Aligned_cols=120  Identities=14%  Similarity=0.192  Sum_probs=74.2

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh--HHHHHHhhhhhhhhccCCCCccccccCCH---HHHh
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSM---DEVL  234 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~ll  234 (342)
                      ..+.||++.|+|.|.+|++++..| ...|+ +|.+++|..+.  +.+...+.+..   ..+. ........++   .+.+
T Consensus       144 ~~l~gk~~lVlGAGGaaraia~~L-~~~G~~~v~v~nRt~~~~~~a~~la~~~~~---~~~~-~v~~~~~~~l~~~~~~l  218 (312)
T 3t4e_A          144 FDMRGKTMVLLGAGGAATAIGAQA-AIEGIKEIKLFNRKDDFFEKAVAFAKRVNE---NTDC-VVTVTDLADQHAFTEAL  218 (312)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEECSSTHHHHHHHHHHHHHH---HSSC-EEEEEETTCHHHHHHHH
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHH-HHcCCCEEEEEECCCchHHHHHHHHHHhhh---ccCc-ceEEechHhhhhhHhhc
Confidence            357899999999999999999998 57898 89999998321  22222221111   0010 0111122344   5678


Q ss_pred             hcCCEEEEcCCCCc--cccccc--CHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          235 READVISLHPVLDK--TTYHLI--NKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       235 ~~aDiV~l~~pl~~--~t~~li--~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      .++|+|+.+.|..-  .....+  +.   +.++++.+++++.-.+. .+.=|.+|-+.|
T Consensus       219 ~~~DiIINaTp~Gm~~~~~~~~~~~~---~~l~~~~~v~D~vY~P~-~T~ll~~A~~~G  273 (312)
T 3t4e_A          219 ASADILTNGTKVGMKPLENESLIGDV---SLLRPELLVTECVYNPH-MTKLLQQAQQAG  273 (312)
T ss_dssp             HHCSEEEECSSTTSTTSTTCCSCCCG---GGSCTTCEEEECCCSSS-SCHHHHHHHHTT
T ss_pred             cCceEEEECCcCCCCCCCCCcccCCH---HHcCCCCEEEEeccCCC-CCHHHHHHHHCC
Confidence            89999999999742  111111  32   45678999999877664 344444554544

>2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A

Probab=97.29  E-value=0.0092  Score=55.53  Aligned_cols=148  Identities=16%  Similarity=0.109  Sum_probs=91.4

Q ss_pred             HHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC--HHHHHHHH
Q 019387          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG--RIGSAYAR  182 (342)
Q Consensus       105 ~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G--~IG~~vA~  182 (342)
                      ++-.+|+|.|..+.+..++-  +++=++.+.++.                     | .+.|.+|++||=|  ++.++.+.
T Consensus       112 A~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~---------------------g-~l~gl~va~vGD~~~rva~Sl~~  167 (307)
T 2i6u_A          112 ASVATVPVINALSDEFHPCQ--VLADLQTIAERK---------------------G-ALRGLRLSYFGDGANNMAHSLLL  167 (307)
T ss_dssp             HHHCSSCEEESCCSSCCHHH--HHHHHHHHHHHH---------------------S-CCTTCEEEEESCTTSHHHHHHHH
T ss_pred             HhhCCCCEEcCCCCCcCccH--HHHHHHHHHHHh---------------------C-CcCCeEEEEECCCCcCcHHHHHH
Confidence            34456999998775544432  222233333211                     1 3789999999986  99999999


Q ss_pred             HHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC-------Ccc-----c
Q 019387          183 MMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL-------DKT-----T  250 (342)
Q Consensus       183 ~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl-------~~~-----t  250 (342)
                      .+ ..||++|.+..|..-...+...+.........|   ..+....++++.++++|+|..-.-.       .++     .
T Consensus       168 ~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~  243 (307)
T 2i6u_A          168 GG-VTAGIHVTVAAPEGFLPDPSVRAAAERRAQDTG---ASVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDRVKPFR  243 (307)
T ss_dssp             HH-HHTTCEEEEECCTTSCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEEEECCSSCTTCTTSCCCSSGGGG
T ss_pred             HH-HHCCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhcCCCEEEecceecCCcccchHHHHHHHh
Confidence            87 579999999887542211111110000011112   1133457899999999999774320       011     1


Q ss_pred             ccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          251 YHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       251 ~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      ..-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       244 ~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~e  276 (307)
T 2i6u_A          244 PFQLNSRLLALADSDAIVLHCLPAHRGDEITDA  276 (307)
T ss_dssp             GGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             hcCCCHHHHhhcCCCcEEECCCCCCCCcccCHh
Confidence            3556889999999999998875   56656554

>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5

Probab=97.29  E-value=0.0012  Score=61.34  Aligned_cols=109  Identities=15%  Similarity=0.190  Sum_probs=66.4

Q ss_pred             CeEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~-vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|||||+|.||+. +++.+.+.-++++. ++|+.++.. +.+.+.+       +.     ...++++++..+.|+|++|
T Consensus         6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~-~~~~~~~-------g~-----~~~~~~~~l~~~~D~V~i~   72 (319)
T 1tlt_A            6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESW-------RI-----PYADSLSSLAASCDAVFVH   72 (319)
T ss_dssp             EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHH-------TC-----CBCSSHHHHHTTCSEEEEC
T ss_pred             ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHH-HHHHHHc-------CC-----CccCcHHHhhcCCCEEEEe
Confidence            48999999999997 88876433478876 789887542 2222221       11     1346777776789999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCce
Q 019387          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga-~lINv-aRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +|....  .   +-....++.|. +++.- .--.+-+.+.|.++.++..+.
T Consensus        73 tp~~~h--~---~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~  118 (319)
T 1tlt_A           73 SSTASH--F---DVVSTLLNAGVHVCVDKPLAENLRDAERLVELAARKKLT  118 (319)
T ss_dssp             SCTTHH--H---HHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCchhH--H---HHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHcCCe
Confidence            995322  1   22223455565 55542 222334456677777665443

>3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum}

Probab=97.27  E-value=0.0013  Score=60.66  Aligned_cols=109  Identities=15%  Similarity=0.121  Sum_probs=70.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      ..+.|+++.|+|.|.+|++++..| ...|+ +|.+++|..++. ++..+.+            ......++++ + ++|+
T Consensus       118 ~~~~~k~vlvlGaGGaaraia~~L-~~~G~~~v~v~nRt~~ka-~~La~~~------------~~~~~~~l~~-l-~~Di  181 (282)
T 3fbt_A          118 VEIKNNICVVLGSGGAARAVLQYL-KDNFAKDIYVVTRNPEKT-SEIYGEF------------KVISYDELSN-L-KGDV  181 (282)
T ss_dssp             CCCTTSEEEEECSSTTHHHHHHHH-HHTTCSEEEEEESCHHHH-HHHCTTS------------EEEEHHHHTT-C-CCSE
T ss_pred             CCccCCEEEEECCcHHHHHHHHHH-HHcCCCEEEEEeCCHHHH-HHHHHhc------------CcccHHHHHh-c-cCCE
Confidence            357899999999999999999997 57898 999999987542 2211110            0111123444 4 8999


Q ss_pred             EEEcCCCC--cccc-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          240 ISLHPVLD--KTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       240 V~l~~pl~--~~t~-~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      |+.++|..  ++.. -.++.+.   ++++.+++++.-.+. .+.=|.+|-+.|
T Consensus       182 vInaTp~Gm~~~~~~~pi~~~~---l~~~~~v~DlvY~P~-~T~ll~~A~~~G  230 (282)
T 3fbt_A          182 IINCTPKGMYPKEGESPVDKEV---VAKFSSAVDLIYNPV-ETLFLKYARESG  230 (282)
T ss_dssp             EEECSSTTSTTSTTCCSSCHHH---HTTCSEEEESCCSSS-SCHHHHHHHHTT
T ss_pred             EEECCccCccCCCccCCCCHHH---cCCCCEEEEEeeCCC-CCHHHHHHHHCc
Confidence            99999973  2211 2355554   468899999876553 334344454444

>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*

Probab=97.27  E-value=0.00042  Score=57.36  Aligned_cols=103  Identities=10%  Similarity=0.102  Sum_probs=69.7

Q ss_pred             CCeEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          165 GQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvgIvG~----G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      -++|+|||.    |++|..+++.| +..|.+|+..++....                   -.+...+.+++++....|++
T Consensus        22 p~~iaVVGas~~~g~~G~~~~~~l-~~~G~~v~~Vnp~~~~-------------------i~G~~~y~sl~~l~~~vDlv   81 (144)
T 2d59_A           22 YKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEE-------------------VLGRKCYPSVLDIPDKIEVV   81 (144)
T ss_dssp             CCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSE-------------------ETTEECBSSGGGCSSCCSEE
T ss_pred             CCEEEEEccCCCCCchHHHHHHHH-HHCCCEEEEECCCCCe-------------------ECCeeccCCHHHcCCCCCEE
Confidence            579999999    79999999997 6788887766664311                   01233456888888889999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~a  294 (342)
                      ++++|. +....++. +..+ ...++++++.+  .  .++.+.+..++..+.-.
T Consensus        82 vi~vp~-~~~~~vv~-~~~~-~gi~~i~~~~g--~--~~~~l~~~a~~~Gi~vv  128 (144)
T 2d59_A           82 DLFVKP-KLTMEYVE-QAIK-KGAKVVWFQYN--T--YNREASKKADEAGLIIV  128 (144)
T ss_dssp             EECSCH-HHHHHHHH-HHHH-HTCSEEEECTT--C--CCHHHHHHHHHTTCEEE
T ss_pred             EEEeCH-HHHHHHHH-HHHH-cCCCEEEECCC--c--hHHHHHHHHHHcCCEEE
Confidence            999995 45555553 3333 33345665533  2  26778888877666533

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=97.26  E-value=0.0014  Score=61.21  Aligned_cols=69  Identities=25%  Similarity=0.425  Sum_probs=50.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l  242 (342)
                      .+|||||+|.||+..++.+.+.-++++. ++|+.++. .+.+.+.+            +.. +.++++++.  +.|+|++
T Consensus         4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~------------~~~-~~~~~~~l~~~~~D~V~i   69 (331)
T 4hkt_A            4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAA-AEAIAGAY------------GCE-VRTIDAIEAAADIDAVVI   69 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHH-HHHHHHHT------------TCE-ECCHHHHHHCTTCCEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHH-HHHHHHHh------------CCC-cCCHHHHhcCCCCCEEEE
Confidence            4899999999999999987433488887 58988754 22222221            122 578999998  8999999


Q ss_pred             cCCCCc
Q 019387          243 HPVLDK  248 (342)
Q Consensus       243 ~~pl~~  248 (342)
                      |+|...
T Consensus        70 ~tp~~~   75 (331)
T 4hkt_A           70 CTPTDT   75 (331)
T ss_dssp             CSCGGG
T ss_pred             eCCchh
Confidence            999543

>2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus}

Probab=97.26  E-value=0.035  Score=51.43  Aligned_cols=190  Identities=13%  Similarity=0.065  Sum_probs=114.0

Q ss_pred             HHHHHHhCCCeEEEecCCCCC----CCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccccCCccChhH
Q 019387           29 WINLLIEQDCRVEICTQKKTI----LSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNA  104 (342)
Q Consensus        29 ~~~~l~~~~~~v~~~~~~~~~----~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~  104 (342)
                      |-.+..+.|.++......+..    -+-+|..+-+..=+|+|+.+..   ....+..                      .
T Consensus        63 Fe~A~~~LGg~~i~l~~~~ss~~kgEsl~DTarvls~~~D~iviR~~---~~~~~~~----------------------l  117 (301)
T 2ef0_A           63 LEVAMVHLGGHAVYLDQKQVGIGEREPVRDVAKNLERFVEGIAARVF---RHETVEA----------------------L  117 (301)
T ss_dssp             HHHHHHHTTCEEEEEEGGGSCTTTCCCHHHHHHHHTTTCSEEEEECS---SHHHHHH----------------------H
T ss_pred             HHHHHHHcCCeEEEECCcccccCCCCchHHHHHHHHHhCCEEEEecC---ChHHHHH----------------------H
Confidence            444556677777666543322    2344444444433577666632   1222221                      2


Q ss_pred             HHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEec-CHHHHHHHHH
Q 019387          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGA-GRIGSAYARM  183 (342)
Q Consensus       105 ~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~-G~IG~~vA~~  183 (342)
                      ++..+|+|.|..+.+..++-  +++=++.+.++.                     | .+.|.+|+++|= +++.++.+..
T Consensus       118 a~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~---------------------g-~l~gl~ia~vGD~~rva~Sl~~~  173 (301)
T 2ef0_A          118 ARHAKVPVVNALSDRAHPLQ--ALADLLTLKEVF---------------------G-GLAGLEVAWVGDGNNVLNSLLEV  173 (301)
T ss_dssp             HHHCSSCEEEEECSSCCHHH--HHHHHHHHHHHH---------------------S-CCTTCEEEEESCCCHHHHHHHHH
T ss_pred             HHHCCCCEEeCCCCccCchH--HHHHHHHHHHHh---------------------C-CcCCcEEEEECCCchhHHHHHHH
Confidence            33346899997665444332  222233333211                     1 378999999997 8999999998


Q ss_pred             HHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCC------cc------cc
Q 019387          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLD------KT------TY  251 (342)
Q Consensus       184 l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~------~~------t~  251 (342)
                      + ..||++|.+..|..-...+...+.    .        .+....++++.++++|+|..-.-..      +.      ..
T Consensus       174 ~-~~~g~~v~~~~P~~~~~~~~~~~~----~--------~~~~~~d~~eav~~aDvvy~~~~~smg~~~~~~~~~~~~~~  240 (301)
T 2ef0_A          174 A-PLAGLKVRVATPKGYEPDPGLLKR----A--------NAFFTHDPKEAALGAHALYTDVWTSMGQEAEREKRLRDFQG  240 (301)
T ss_dssp             H-HHHTCEEEEECCTTCCCCHHHHHH----H--------TCEEESCHHHHHTTCSEEEECCCC--------CHHHHHTTT
T ss_pred             H-HHcCCEEEEECCchhcCCHHHHhh----c--------eeEEECCHHHHhcCCCEEEecCcccCCcccchhHHHHHhhc
Confidence            6 578999999887542211111110    0        0223578999999999997743210      11      23


Q ss_pred             cccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          252 HLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       252 ~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      .-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       241 y~v~~e~l~~a~~~ai~mHplP~~Rg~EI~~e  272 (301)
T 2ef0_A          241 FQVNGELLKLLRPEGVFLHCLPAHYGEETTEE  272 (301)
T ss_dssp             CCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             cccCHHHHHhcCCCcEEECCCCCCCCCccCHH
Confidence            567899999999999999987   77767665

>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A

Probab=97.22  E-value=0.00041  Score=64.88  Aligned_cols=117  Identities=10%  Similarity=0.130  Sum_probs=67.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .++|+|||.|.||..+|..|+ .-|. +|..||+.++.. +............. ..........++ +.+++||+|+++
T Consensus         4 ~~kI~VIGaG~~G~~ia~~la-~~g~~~V~l~D~~~~~~-~~~~~~l~~~~~~~-~~~~~i~~t~d~-~a~~~aDiVi~a   79 (317)
T 2ewd_A            4 RRKIAVIGSGQIGGNIAYIVG-KDNLADVVLFDIAEGIP-QGKALDITHSMVMF-GSTSKVIGTDDY-ADISGSDVVIIT   79 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHH-HHHHHHHHHHHHHH-TCCCCEEEESCG-GGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCCchHH-HHHHHHHHhhhhhc-CCCcEEEECCCH-HHhCCCCEEEEe
Confidence            468999999999999999885 4466 899999986432 22100000000000 011112222456 678999999999


Q ss_pred             CCCCcccccc------------cC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387          244 PVLDKTTYHL------------IN--KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       244 ~pl~~~t~~l------------i~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL  286 (342)
                      ++. +...++            +.  .+.+....+++++|+++-..-+....+.++.
T Consensus        80 vg~-p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~~~  135 (317)
T 2ewd_A           80 ASI-PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQKVS  135 (317)
T ss_dssp             CCC-SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHH
T ss_pred             CCC-CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHhh
Confidence            843 221111            10  0122233468999999876555555566654

>1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A

Probab=97.22  E-value=0.0044  Score=58.33  Aligned_cols=107  Identities=13%  Similarity=0.195  Sum_probs=71.3

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .+.|.+|++||=|  +++++.+..+ ..||++|.+..|..-...+...+.........|   ..+....++++.++++|+
T Consensus       152 ~l~gl~va~vGD~~~~va~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  227 (335)
T 1dxh_A          152 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG---AKLTLTEDPKEAVKGVDF  227 (335)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSE
T ss_pred             CcCCeEEEEecCCccchHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhCCCCE
Confidence            4789999999996  9999999986 579999999887543211111110000011111   123345789999999999


Q ss_pred             EEEcCCC--Cc--c---------cccccCHHHHhcC-CCCcEEEEcC
Q 019387          240 ISLHPVL--DK--T---------TYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       240 V~l~~pl--~~--~---------t~~li~~~~l~~m-k~ga~lINva  272 (342)
                      |..-.-.  ..  +         ...-++.+.++.+ |++++|.-+.
T Consensus       228 vytd~w~smg~~~e~~~er~~~~~~y~v~~~ll~~a~~~~ai~mHcL  274 (335)
T 1dxh_A          228 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  274 (335)
T ss_dssp             EEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             EEeCCccccCccchhhHHHHHHhhcceeCHHHHHhccCCCeEEECCC
Confidence            9774331  11  0         2356789999999 9999998874

>4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae}

Probab=97.20  E-value=0.00076  Score=65.00  Aligned_cols=107  Identities=15%  Similarity=0.219  Sum_probs=66.4

Q ss_pred             eEEEEecCHHHHHHHHHHHhc-------CCcEEEEEcCCchhHHHHHHhhhhhh-----hhccCCCCccccccCCHHHHh
Q 019387          167 TVGVIGAGRIGSAYARMMVEG-------FKMNLIYYDLYQATRLEKFVTAYGQF-----LKANGEQPVTWKRASSMDEVL  234 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~a-------fg~~V~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~ll  234 (342)
                      +|+|||-|.-|.++|..|++.       |+.+|..|.+.++...+...+.....     +...-.-+.......++++.+
T Consensus        36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al  115 (391)
T 4fgw_A           36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV  115 (391)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred             eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence            899999999999999988642       33568888766532111111100000     000011122334457899999


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      ++||+|++++|. ...+.++ ++.-..++++..+|+++-|=
T Consensus       116 ~~ad~ii~avPs-~~~r~~l-~~l~~~~~~~~~iv~~~KGi  154 (391)
T 4fgw_A          116 KDVDIIVFNIPH-QFLPRIC-SQLKGHVDSHVRAISCLKGF  154 (391)
T ss_dssp             TTCSEEEECSCG-GGHHHHH-HHHTTTSCTTCEEEECCCSC
T ss_pred             hcCCEEEEECCh-hhhHHHH-HHhccccCCCceeEEecccc
Confidence            999999999994 3333333 23345678899999999883

>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}

Probab=97.15  E-value=0.0009  Score=59.57  Aligned_cols=97  Identities=21%  Similarity=0.179  Sum_probs=61.9

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      -..+.|++|.|||.|.+|...++.| ...|++|+++++........+.+.        +.  ..+....--++.+.++|+
T Consensus        26 fl~L~gk~VLVVGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~l~~~--------~~--i~~i~~~~~~~dL~~adL   94 (223)
T 3dfz_A           26 MLDLKGRSVLVVGGGTIATRRIKGF-LQEGAAITVVAPTVSAEINEWEAK--------GQ--LRVKRKKVGEEDLLNVFF   94 (223)
T ss_dssp             EECCTTCCEEEECCSHHHHHHHHHH-GGGCCCEEEECSSCCHHHHHHHHT--------TS--CEEECSCCCGGGSSSCSE
T ss_pred             EEEcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCCHHHHHHHHc--------CC--cEEEECCCCHhHhCCCCE
Confidence            3579999999999999999999998 578999999998876544433221        11  111110111334678999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+.+... ++    +|.......+ -.++||++.
T Consensus        95 VIaAT~d-~~----~N~~I~~~ak-~gi~VNvvD  122 (223)
T 3dfz_A           95 IVVATND-QA----VNKFVKQHIK-NDQLVNMAS  122 (223)
T ss_dssp             EEECCCC-TH----HHHHHHHHSC-TTCEEEC--
T ss_pred             EEECCCC-HH----HHHHHHHHHh-CCCEEEEeC
Confidence            9988653 33    2344444445 457788743

>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*

Probab=97.14  E-value=0.0019  Score=60.88  Aligned_cols=76  Identities=18%  Similarity=0.304  Sum_probs=49.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .+|+|||.|.+|..+|..|+ .-|. +|..||+.++. .+............ ...+.......++++.+++||+|+++.
T Consensus        10 ~kI~VIGaG~vG~~lA~~la-~~g~~~V~L~D~~~~~-~~~~~~~l~~~~~~-~~~~~~i~~t~d~~ea~~~aDiVi~a~   86 (331)
T 1pzg_A           10 KKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGM-PEGKALDLSHVTSV-VDTNVSVRAEYSYEAALTGADCVIVTA   86 (331)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSH-HHHHHHHHHHHHHH-TTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECChhH-HHHHHHHHHhhhhc-cCCCCEEEEeCCHHHHhCCCCEEEEcc
Confidence            58999999999999999985 3455 89999998643 22211100000000 011222333468888899999999998

>4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis}

Probab=97.13  E-value=0.01  Score=55.90  Aligned_cols=114  Identities=17%  Similarity=0.147  Sum_probs=73.6

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +.|++|++||= +++.++.+..+ ..||++|.+..|..-...+...+.........+   ..+....+++++++++|+|.
T Consensus       177 l~glkva~vGD~~nva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDVvy  252 (340)
T 4ep1_A          177 FKGIKLAYVGDGNNVCHSLLLAS-AKVGMHMTVATPVGYRPNEEIVKKALAIAKETG---AEIEILHNPELAVNEADFIY  252 (340)
T ss_dssp             CTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHC---CCEEEESCHHHHHTTCSEEE
T ss_pred             CCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CeEEEECCHHHHhCCCCEEE
Confidence            78999999996 57788888876 578999999877532211111111000011111   12234578999999999997


Q ss_pred             EcCCCCc----c-------cccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          242 LHPVLDK----T-------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       242 l~~pl~~----~-------t~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      .-.-...    +       ...-++.+.++.+|++++|.=+.   ||.=|+.+
T Consensus       253 t~~w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~e  305 (340)
T 4ep1_A          253 TDVWMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCLPAHREEEVTGE  305 (340)
T ss_dssp             ECCC------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             ecCccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            6543221    0       12457999999999999999886   78666654

>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}

Probab=97.12  E-value=0.00084  Score=62.38  Aligned_cols=104  Identities=18%  Similarity=0.169  Sum_probs=62.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l  242 (342)
                      .+|||||+|.||+..++.|.+.-+.++. ++|+.++.. +.    +    ...      ...+.+++++++  ++|+|++
T Consensus        11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~-~~----~----~~~------~~~~~~~~~~l~~~~~D~V~i   75 (315)
T 3c1a_A           11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNL-AL----V----PPG------CVIESDWRSVVSAPEVEAVII   75 (315)
T ss_dssp             EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHH-TT----C----CTT------CEEESSTHHHHTCTTCCEEEE
T ss_pred             ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HH----H----Hhh------CcccCCHHHHhhCCCCCEEEE
Confidence            4799999999999999987433367755 789876532 11    0    000      223568899985  7999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga-~lINv-aRG~~vd~~aL~~aL~~g  289 (342)
                      |+|..  .+.   +-....++.|. +++.- .--.+-+.+.|.++.++.
T Consensus        76 ~tp~~--~h~---~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~~  119 (315)
T 3c1a_A           76 ATPPA--THA---EITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKAT  119 (315)
T ss_dssp             ESCGG--GHH---HHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHHH
T ss_pred             eCChH--HHH---HHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHHc
Confidence            99842  221   22223355564 55542 111223345566666543

>1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1

Probab=97.12  E-value=0.021  Score=53.15  Aligned_cols=106  Identities=17%  Similarity=0.258  Sum_probs=70.9

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      .+.|.+|++||=   |++.++.+..+ ..||++|.+..|..-...+...+    .....+   ..+....+++++++++|
T Consensus       152 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~eav~~aD  223 (308)
T 1ml4_A          152 RIDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVE----ELREKG---MKVVETTTLEDVIGKLD  223 (308)
T ss_dssp             CSSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHH----HHHHTT---CCEEEESCTHHHHTTCS
T ss_pred             CCCCeEEEEeCCCCcCchHHHHHHHH-HHCCCEEEEECCccccCCHHHHH----HHHHcC---CeEEEEcCHHHHhcCCC
Confidence            378999999998   48999999986 68999999988754321111111    011112   12333478999999999


Q ss_pred             EEEEcCCCCcc------c-----ccccCHHHHhcCCCCcEEEEcC-CCc
Q 019387          239 VISLHPVLDKT------T-----YHLINKERLATMKKEAILVNCS-RGP  275 (342)
Q Consensus       239 iV~l~~pl~~~------t-----~~li~~~~l~~mk~ga~lINva-RG~  275 (342)
                      +|..-.-..+.      -     ..-++.+.++.+|++++|.-+. ||.
T Consensus       224 vvyt~~~q~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~  272 (308)
T 1ml4_A          224 VLYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPLPRVD  272 (308)
T ss_dssp             EEEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCSCCSS
T ss_pred             EEEECCccccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCCCCCC
Confidence            99775432211      0     2456888888889998888765 443

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=97.10  E-value=0.0016  Score=61.55  Aligned_cols=70  Identities=26%  Similarity=0.396  Sum_probs=50.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh--hcCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--READVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~af-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll--~~aDiV~  241 (342)
                      .+|||||+|.||+..++.+ +.. ++++. ++|++++.. +.+.+.+       +     ...+.++++++  .+.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~lvav~d~~~~~~-~~~~~~~-------g-----~~~~~~~~~~l~~~~~D~V~   71 (354)
T 3db2_A            6 VGVAAIGLGRWAYVMADAY-TKSEKLKLVTCYSRTEDKR-EKFGKRY-------N-----CAGDATMEALLAREDVEMVI   71 (354)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTCSSEEEEEEECSSHHHH-HHHHHHH-------T-----CCCCSSHHHHHHCSSCCEEE
T ss_pred             ceEEEEccCHHHHHHHHHH-HhCCCcEEEEEECCCHHHH-HHHHHHc-------C-----CCCcCCHHHHhcCCCCCEEE
Confidence            4899999999999999987 555 88866 679887532 2222222       1     22357999999  5699999


Q ss_pred             EcCCCCcc
Q 019387          242 LHPVLDKT  249 (342)
Q Consensus       242 l~~pl~~~  249 (342)
                      +|+|...+
T Consensus        72 i~tp~~~h   79 (354)
T 3db2_A           72 ITVPNDKH   79 (354)
T ss_dssp             ECSCTTSH
T ss_pred             EeCChHHH
Confidence            99996443

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=97.10  E-value=0.002  Score=60.40  Aligned_cols=69  Identities=20%  Similarity=0.263  Sum_probs=48.1

Q ss_pred             CeEEEEecCHHHHHHHHHHH-hcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~-~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~  241 (342)
                      .+|||||+|.||+..++.++ +.-+++++ ++|++++.. +.+.+.+       +..    ..+.++++++.  +.|+|+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~-~~~a~~~-------g~~----~~~~~~~~~l~~~~~D~V~   76 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQL-EWAKNEL-------GVE----TTYTNYKDMIDTENIDAIF   76 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHH-HHHHHTT-------CCS----EEESCHHHHHTTSCCSEEE
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHH-HHHHHHh-------CCC----cccCCHHHHhcCCCCCEEE
Confidence            48999999999999999874 33478865 689876532 2221111       110    23468999986  699999


Q ss_pred             EcCCC
Q 019387          242 LHPVL  246 (342)
Q Consensus       242 l~~pl  246 (342)
                      +|+|.
T Consensus        77 i~tp~   81 (346)
T 3cea_A           77 IVAPT   81 (346)
T ss_dssp             ECSCG
T ss_pred             EeCCh
Confidence            99984

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=97.09  E-value=0.0014  Score=61.54  Aligned_cols=70  Identities=24%  Similarity=0.358  Sum_probs=50.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l  242 (342)
                      .+|||||+|.||+..++.|.+.-+++++ ++|+.++.. +.+.+.+       +     ...+.++++++.  +.|+|++
T Consensus         5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------g-----~~~~~~~~~~l~~~~~D~V~i   71 (344)
T 3euw_A            5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGA-QRLAEAN-------G-----AEAVASPDEVFARDDIDGIVI   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHH-HHHHHTT-------T-----CEEESSHHHHTTCSCCCEEEE
T ss_pred             eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHH-HHHHHHc-------C-----CceeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999987433478877 688876542 2222211       1     234579999998  8999999


Q ss_pred             cCCCCc
Q 019387          243 HPVLDK  248 (342)
Q Consensus       243 ~~pl~~  248 (342)
                      |+|...
T Consensus        72 ~tp~~~   77 (344)
T 3euw_A           72 GSPTST   77 (344)
T ss_dssp             CSCGGG
T ss_pred             eCCchh
Confidence            999543

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=97.08  E-value=0.0022  Score=60.04  Aligned_cols=71  Identities=11%  Similarity=0.127  Sum_probs=50.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l  242 (342)
                      .+|||||+|.||+..++.|.+.-++++. ++|++++. .+.+.+.+       +..    ..+.++++++.  +.|+|++
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~-------~~~----~~~~~~~~ll~~~~~D~V~i   73 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLEN-AQKMAKEL-------AIP----VAYGSYEELCKDETIDIIYI   73 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHH-HHHHHHHT-------TCC----CCBSSHHHHHHCTTCSEEEE
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHH-HHHHHHHc-------CCC----ceeCCHHHHhcCCCCCEEEE
Confidence            4899999999999999987433478877 57887653 23322222       111    23579999998  7999999


Q ss_pred             cCCCCc
Q 019387          243 HPVLDK  248 (342)
Q Consensus       243 ~~pl~~  248 (342)
                      |+|...
T Consensus        74 ~tp~~~   79 (330)
T 3e9m_A           74 PTYNQG   79 (330)
T ss_dssp             CCCGGG
T ss_pred             cCCCHH
Confidence            999543

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=97.06  E-value=0.0023  Score=59.63  Aligned_cols=67  Identities=16%  Similarity=0.267  Sum_probs=47.4

Q ss_pred             eEEEEecCHHHHHH-HHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEE
Q 019387          167 TVGVIGAGRIGSAY-ARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       167 tvgIvG~G~IG~~v-A~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l  242 (342)
                      +|||||+|.||+.. ++.+.+ -+++++ ++|++++.. +.+.+.+       +..    ..+.++++++.  +.|+|++
T Consensus         2 ~vgiiG~G~~g~~~~~~~l~~-~~~~~vav~d~~~~~~-~~~~~~~-------g~~----~~~~~~~~~l~~~~~D~V~i   68 (332)
T 2glx_A            2 RWGLIGASTIAREWVIGAIRA-TGGEVVSMMSTSAERG-AAYATEN-------GIG----KSVTSVEELVGDPDVDAVYV   68 (332)
T ss_dssp             EEEEESCCHHHHHTHHHHHHH-TTCEEEEEECSCHHHH-HHHHHHT-------TCS----CCBSCHHHHHTCTTCCEEEE
T ss_pred             eEEEEcccHHHHHhhhHHhhc-CCCeEEEEECCCHHHH-HHHHHHc-------CCC----cccCCHHHHhcCCCCCEEEE
Confidence            79999999999998 777655 788876 689886542 2222221       111    13468999987  4999999


Q ss_pred             cCCC
Q 019387          243 HPVL  246 (342)
Q Consensus       243 ~~pl  246 (342)
                      ++|.
T Consensus        69 ~tp~   72 (332)
T 2glx_A           69 STTN   72 (332)
T ss_dssp             CSCG
T ss_pred             eCCh
Confidence            9994

>3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp}

Probab=97.06  E-value=0.048  Score=50.64  Aligned_cols=115  Identities=15%  Similarity=0.159  Sum_probs=74.0

Q ss_pred             ccC-CCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          162 LLK-GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~L~-gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .+. |++|++||= +++.++.+..+ ..||++|.+..|..-...+...+.........+   ..+....++++.++++|+
T Consensus       142 ~l~~gl~va~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~~~~~~d~~eav~~aDv  217 (307)
T 3tpf_A          142 MQNGIAKVAFIGDSNNMCNSWLITA-AILGFEISIAMPKNYKISPEIWEFAMKQALISG---AKISLGYDKFEALKDKDV  217 (307)
T ss_dssp             CGGGCCEEEEESCSSHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEESCHHHHHTTCSE
T ss_pred             CCCCCCEEEEEcCCCccHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEEcCHHHHhcCCCE
Confidence            367 999999995 57888888876 578999999887532111111110000000111   123345799999999999


Q ss_pred             EEEcCC--CCcc----------cccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          240 ISLHPV--LDKT----------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       240 V~l~~p--l~~~----------t~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      |..-.-  ...+          ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       218 vyt~~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~lPa~Rg~EI~~e  273 (307)
T 3tpf_A          218 VITDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEE  273 (307)
T ss_dssp             EEECCSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECSCCCBTTTBCHH
T ss_pred             EEecCcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCCCCCCCceeCHH
Confidence            976541  1111          13557899999999999998875   77767655

>3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus}

Probab=97.04  E-value=0.068  Score=49.96  Aligned_cols=115  Identities=17%  Similarity=0.125  Sum_probs=73.3

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|++|++||= +++.++.+..+ ..+|++|.+..|..-...+...+.........+   ..+....++++.++++|+|
T Consensus       154 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~v~~~~d~~eav~~aDvv  229 (323)
T 3gd5_A          154 RLAGLKLAYVGDGNNVAHSLLLGC-AKVGMSIAVATPEGFTPDPAVSARASEIAGRTG---AEVQILRDPFEAARGAHIL  229 (323)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEECCCCcHHHHHHHHH-HHcCCEEEEECCCcccCCHHHHHHHHHHHHHcC---CeEEEECCHHHHhcCCCEE
Confidence            378999999996 67888888876 578999999877532111111110000001111   1233457899999999999


Q ss_pred             EEcCCCCc--c----------cccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          241 SLHPVLDK--T----------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       241 ~l~~pl~~--~----------t~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      ..-.-...  +          ...-++.+.++.+|++++|.=+.   ||.=|+.+
T Consensus       230 yt~~wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHclPa~Rg~EI~~e  284 (323)
T 3gd5_A          230 YTDVWTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCLPAHRGEEITDE  284 (323)
T ss_dssp             EECCCC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             EEeceecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCCCCCCCceeCHH
Confidence            76543211  0          12457999999999999998874   77666654

>4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A

Probab=97.04  E-value=0.078  Score=50.17  Aligned_cols=114  Identities=12%  Similarity=0.163  Sum_probs=72.0

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|.+|++||= +++.++.+..+ ..||++|.+..|..-...+...+.........+   ..+....+++ .++++|+|
T Consensus       150 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G---~~v~~~~d~~-av~~aDVV  224 (355)
T 4a8p_A          150 KLEDCKVVFVGDATQVCFSLGLIT-TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSG---GSFLVTDDAS-SVEGADFL  224 (355)
T ss_dssp             CGGGCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHS---CEEEEECCGG-GGTTCSEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCCccCCCHHHHHHHHHHHHHcC---CeEEEECCHH-HHcCCCEE
Confidence            478999999996 67888888886 579999999887532211111110000001111   1223356888 99999999


Q ss_pred             EEcC----CCCccc----------ccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          241 SLHP----VLDKTT----------YHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       241 ~l~~----pl~~~t----------~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      ..-+    ...++.          ..-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       225 ytd~w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcLPa~Rg~EIt~e  281 (355)
T 4a8p_A          225 YTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDE  281 (355)
T ss_dssp             EECCSSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHH
T ss_pred             EecccccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHH
Confidence            8633    111110          2457889999999999998875   67666654

>1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A*

Probab=97.04  E-value=0.03  Score=51.89  Aligned_cols=103  Identities=17%  Similarity=0.218  Sum_probs=71.2

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~L~gktvgIvG~---G~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                      .+.|.+|++||=   |++.++.+..+ ..| |++|.+..|..-...+..       ....+   ..+....+++++++++
T Consensus       146 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~-------~~~~g---~~~~~~~d~~eav~~a  214 (299)
T 1pg5_A          146 TIDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKEI-------LDELN---YPVKEVENPFEVINEV  214 (299)
T ss_dssp             CSTTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHHH-------HTTCC---SCEEEESCGGGTGGGC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCchhcCCHHH-------HHHcC---CeEEEeCCHHHHhcCC
Confidence            378999999998   59999999986 678 999999887542211111       11111   1233447899999999


Q ss_pred             CEEEEcCCCCcc-----------cccccCHHHHhcCCCCcEEEEcC-CCc
Q 019387          238 DVISLHPVLDKT-----------TYHLINKERLATMKKEAILVNCS-RGP  275 (342)
Q Consensus       238 DiV~l~~pl~~~-----------t~~li~~~~l~~mk~ga~lINva-RG~  275 (342)
                      |+|..-.-..+.           ...-++.+.++.+|++++|.-+. ||.
T Consensus       215 Dvvyt~~~q~er~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~lPrg~  264 (299)
T 1pg5_A          215 DVLYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLPRVN  264 (299)
T ss_dssp             SEEEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSCCSS
T ss_pred             CEEEeCCcccccccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCCCCCC
Confidence            999665543321           13567889999999999888775 443

>1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A

Probab=97.03  E-value=0.012  Score=55.13  Aligned_cols=140  Identities=16%  Similarity=0.113  Sum_probs=84.5

Q ss_pred             HHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecC-HHHHHHHHH
Q 019387          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAG-RIGSAYARM  183 (342)
Q Consensus       105 ~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G-~IG~~vA~~  183 (342)
                      ++..+|+|.|..+.+..++-  +++=++.+.++.                     | .+.|.+|++||=| ++.++.+..
T Consensus       119 A~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~---------------------g-~l~gl~va~vGD~~~va~Sl~~~  174 (321)
T 1oth_A          119 AKEASIPIINGLSDLYHPIQ--ILADYLTLQEHY---------------------S-SLKGLTLSWIGDGNNILHSIMMS  174 (321)
T ss_dssp             HHHCSSCEEESCCSSCCHHH--HHHHHHHHHHHH---------------------S-CCTTCEEEEESCSSHHHHHHHTT
T ss_pred             HHhCCCCEEcCCCCCCCcHH--HHHHHHHHHHHh---------------------C-CcCCcEEEEECCchhhHHHHHHH
Confidence            34456999998775544432  222233333211                     1 3789999999985 477777776


Q ss_pred             HHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC--CCc--c--------cc
Q 019387          184 MVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV--LDK--T--------TY  251 (342)
Q Consensus       184 l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p--l~~--~--------t~  251 (342)
                      + ..||++|.+..|..-...+...+.........|   ..+....++++.++++|+|..-+-  ...  +        ..
T Consensus       175 ~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G---~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~  250 (321)
T 1oth_A          175 A-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENG---TKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQG  250 (321)
T ss_dssp             T-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTT
T ss_pred             H-HHcCCeEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccC
Confidence            5 578999999887542211111110000011111   123345789999999999988331  111  1        11


Q ss_pred             cccCHHHHhcCCCCcEEEEcC
Q 019387          252 HLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       252 ~li~~~~l~~mk~ga~lINva  272 (342)
                      .-++.+.++.+|++++|.-+.
T Consensus       251 y~v~~~~l~~a~~dai~mH~l  271 (321)
T 1oth_A          251 YQVTMKTAKVAASDWTFLHCL  271 (321)
T ss_dssp             CCBCHHHHHTSCTTCEEEECS
T ss_pred             ceECHHHHhhcCCCCEEECCC
Confidence            457899999999999999885

>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5

Probab=97.01  E-value=0.0028  Score=59.00  Aligned_cols=110  Identities=15%  Similarity=0.170  Sum_probs=60.6

Q ss_pred             CeEEEEecCHHHHH-HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~-vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV~l~  243 (342)
                      .+|||||+|+||+. .++.|.+.-++++.++|++++.. +.+.+.+       +...    ...+..+++ .+.|+|++|
T Consensus         3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~-~~~a~~~-------g~~~----~~~~~~~~l~~~~D~V~i~   70 (323)
T 1xea_A            3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRY-------RVSA----TCTDYRDVLQYGVDAVMIH   70 (323)
T ss_dssp             EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHT-------TCCC----CCSSTTGGGGGCCSEEEEC
T ss_pred             cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHH-HHHHHHc-------CCCc----cccCHHHHhhcCCCEEEEE
Confidence            37999999999994 88887332378888999887542 2222222       1110    012333444 689999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCce
Q 019387          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga-~lINv-aRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +|..  .+.-   -....++.|. +++.- .--.+-+-+.|.++.++..+.
T Consensus        71 tp~~--~h~~---~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~  116 (323)
T 1xea_A           71 AATD--VHST---LAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQP  116 (323)
T ss_dssp             SCGG--GHHH---HHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTCC
T ss_pred             CCch--hHHH---HHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhcCCe
Confidence            9942  2211   1223344453 55542 111222344566666554443

>4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A

Probab=97.01  E-value=0.015  Score=55.20  Aligned_cols=106  Identities=16%  Similarity=0.195  Sum_probs=70.2

Q ss_pred             cCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhH--HHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          163 LKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATR--LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       163 L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      +.|++|++||=|  +++++.+..+ ..||++|.+..|..-..  .+.+.+.........+   ..+....+++++++++|
T Consensus       178 l~glkva~vGD~~nnva~Sl~~~~-~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g---~~i~~~~d~~eav~~aD  253 (365)
T 4amu_A          178 LKNKKIVFIGDYKNNVGVSTMIGA-AFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNG---GSLRFSTDKILAAQDAD  253 (365)
T ss_dssp             CTTCEEEEESSTTSHHHHHHHHHH-HHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHS---CEEEEESCHHHHTTTCS
T ss_pred             CCCCEEEEECCCCcchHHHHHHHH-HHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcC---CEEEEECCHHHHhcCCC
Confidence            789999999988  7889998886 57999999988754222  1222111111111111   12334579999999999


Q ss_pred             EEEEcC--CCCcc-----------cccccCHHHHhcCCCCcEEEEcC
Q 019387          239 VISLHP--VLDKT-----------TYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       239 iV~l~~--pl~~~-----------t~~li~~~~l~~mk~ga~lINva  272 (342)
                      +|..-+  ..+++           ...-++.+.++.+|++++|.=+.
T Consensus       254 VVytd~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL  300 (365)
T 4amu_A          254 VIYTDVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL  300 (365)
T ss_dssp             EEEECCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred             EEEecccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence            998742  22221           12457899999999999988875

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=96.99  E-value=0.0016  Score=61.51  Aligned_cols=69  Identities=22%  Similarity=0.304  Sum_probs=50.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhc-CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~a-fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~  241 (342)
                      .+|||||+|.||+..++.+.+. -+++++ ++|++++.. +.+.+.+       +     ...+.++++++.  +.|+|+
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~~~~~-------~-----~~~~~~~~~ll~~~~~D~V~   80 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAAL-KAAVERT-------G-----ARGHASLTDMLAQTDADIVI   80 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHH-HHHHHHH-------C-----CEEESCHHHHHHHCCCSEEE
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHH-HHHHHHc-------C-----CceeCCHHHHhcCCCCCEEE
Confidence            4899999999999999987433 378866 789887542 2222222       1     234579999997  799999


Q ss_pred             EcCCCC
Q 019387          242 LHPVLD  247 (342)
Q Consensus       242 l~~pl~  247 (342)
                      +|+|..
T Consensus        81 i~tp~~   86 (354)
T 3q2i_A           81 LTTPSG   86 (354)
T ss_dssp             ECSCGG
T ss_pred             ECCCcH
Confidence            999953

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=96.99  E-value=0.0017  Score=61.53  Aligned_cols=67  Identities=19%  Similarity=0.299  Sum_probs=49.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~af-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~  241 (342)
                      .+|||||+|.||+..++.+ +.. ++++. ++|+.++.. +. ...+            +...+.++++++.  +.|+|+
T Consensus         6 ~~vgiiG~G~~g~~~~~~l-~~~~~~~l~av~d~~~~~~-~~-a~~~------------g~~~~~~~~~ll~~~~~D~V~   70 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLA-SAADNLEVHGVFDILAEKR-EA-AAQK------------GLKIYESYEAVLADEKVDAVL   70 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHH-HTSTTEEEEEEECSSHHHH-HH-HHTT------------TCCBCSCHHHHHHCTTCCEEE
T ss_pred             CcEEEECcCHHHHHHHHHH-HhCCCcEEEEEEcCCHHHH-HH-HHhc------------CCceeCCHHHHhcCCCCCEEE
Confidence            4799999999999999987 455 78887 578876542 11 1111            1234579999998  789999


Q ss_pred             EcCCCC
Q 019387          242 LHPVLD  247 (342)
Q Consensus       242 l~~pl~  247 (342)
                      +|+|..
T Consensus        71 i~tp~~   76 (359)
T 3e18_A           71 IATPND   76 (359)
T ss_dssp             ECSCGG
T ss_pred             EcCCcH
Confidence            999953

>1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1

Probab=96.99  E-value=0.0034  Score=58.28  Aligned_cols=76  Identities=17%  Similarity=0.235  Sum_probs=47.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      ++|+|||.|.||..+|..|++ -|  .+|..||+.++. .+.....+........ ...... ..++ +.+++||+|+++
T Consensus         2 ~kI~VIGaG~~G~~la~~L~~-~g~~~~V~l~d~~~~~-~~~~~~~l~~~~~~~~-~~~~~~-~~d~-~~~~~aDvViia   76 (309)
T 1hyh_A            2 RKIGIIGLGNVGAAVAHGLIA-QGVADDYVFIDANEAK-VKADQIDFQDAMANLE-AHGNIV-INDW-AALADADVVIST   76 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-HTCCSEEEEECSSHHH-HHHHHHHHHHHGGGSS-SCCEEE-ESCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCCCEEEEEcCCHHH-HHHHHHHHHhhhhhcC-CCeEEE-eCCH-HHhCCCCEEEEe
Confidence            479999999999999998753 35  699999998643 2222111110000000 011111 2456 677899999999


Q ss_pred             CCC
Q 019387          244 PVL  246 (342)
Q Consensus       244 ~pl  246 (342)
                      +|.
T Consensus        77 v~~   79 (309)
T 1hyh_A           77 LGN   79 (309)
T ss_dssp             CSC
T ss_pred             cCC
Confidence            985

>4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis}

Probab=96.97  E-value=0.073  Score=50.07  Aligned_cols=114  Identities=13%  Similarity=0.169  Sum_probs=71.9

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|++|++||= +++.++.+..+ ..||++|.+..|..-...+...+.........+   ..+....+++ .++++|+|
T Consensus       172 ~l~glkva~vGD~~rva~Sl~~~~-~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g---~~v~~~~d~~-av~~aDvv  246 (339)
T 4a8t_A          172 KLEDCKVVFVGDATQVCFSLGLIT-TKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSG---GSFLVTDDAS-SVEGADFL  246 (339)
T ss_dssp             CGGGCEEEEESSCCHHHHHHHHHH-HHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHC---CEEEEECCGG-GGTTCSEE
T ss_pred             CCCCCEEEEECCCchhHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CEEEEECChh-HHcCCCEE
Confidence            478999999996 67888888886 579999999887532211111110000001111   1223356888 99999999


Q ss_pred             EEcC--CCC--ccc----------ccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          241 SLHP--VLD--KTT----------YHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       241 ~l~~--pl~--~~t----------~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      ..-+  ...  ++.          ..-++.+.++.+|++++|.=+.   ||.=|+.+
T Consensus       247 ytd~w~smg~~~~~~~er~~~~~~~y~vt~ell~~ak~dai~mHcLPa~Rg~EIt~e  303 (339)
T 4a8t_A          247 YTDVWYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCLPATRGEEVTDE  303 (339)
T ss_dssp             EECCSSCCTTSCCCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECSCCCBTTTBCHH
T ss_pred             EecCcccCCchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCCCCCCCCeeCHH
Confidence            8633  111  111          2557888999999999988875   67666654

>2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii}

Probab=96.96  E-value=0.042  Score=52.04  Aligned_cols=107  Identities=17%  Similarity=0.213  Sum_probs=70.8

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .+.|.+|++||=|  +++++.+..+ ..||++|.+..|..-...+...+.........+   ..+....++++.++++|+
T Consensus       173 ~l~gl~va~vGD~~~rva~Sl~~~~-~~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G---~~v~~~~d~~eav~~aDv  248 (359)
T 2w37_A          173 KLQGLTLTFMGDGRNNVANSLLVTG-AILGVNIHIVAPKALFPTEETQNIAKGFAEKSG---AKLVITDDLDEGLKGSNV  248 (359)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH-HHHTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSE
T ss_pred             CcCCeEEEEECCCccchHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CeEEEEeCHHHHhcCCCE
Confidence            4789999999986  9999999987 578999999887542211111110000011111   123345789999999999


Q ss_pred             EEEcCC--CCc---c------cccccCHHHHhcCC---CCcEEEEcC
Q 019387          240 ISLHPV--LDK---T------TYHLINKERLATMK---KEAILVNCS  272 (342)
Q Consensus       240 V~l~~p--l~~---~------t~~li~~~~l~~mk---~ga~lINva  272 (342)
                      |..-.-  ...   +      ...-++.+.++.+|   ++++|.-+.
T Consensus       249 vytd~w~smg~ee~~er~~~~~~y~v~~ell~~ak~~~~dai~MHcL  295 (359)
T 2w37_A          249 VYTDVWVSMGESNWEERVKELTPYQVNMEAMKKTGTPDDQLIFMHCL  295 (359)
T ss_dssp             EEECCSCCTTCTTHHHHHHHHGGGCBCHHHHHTTCCCGGGCEEEECS
T ss_pred             EEEcccccccccchHHHHHHhhccccCHHHHHhhCCCCCCEEEECCC
Confidence            977433  111   0      23567899999999   899998875

>4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.95  E-value=0.041  Score=51.16  Aligned_cols=109  Identities=15%  Similarity=0.236  Sum_probs=72.1

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.|++|++||= +++.++.+..+ ..||++|.+..|..-...+.       +...  .....+....++++.++++|+|
T Consensus       151 ~l~glkva~vGD~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~~~-------~~~~--~~g~~v~~~~d~~eav~~aDvv  220 (309)
T 4f2g_A          151 PIRGKTVAWVGDANNMLYTWIQAA-RILDFKLQLSTPPGYALDAK-------LVDA--ESAPFYQVFDDPNEACKGADLV  220 (309)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHHTCEEEEECCGGGCCCGG-------GSCG--GGGGGEEECSSHHHHTTTCSEE
T ss_pred             CCCCCEEEEECCCcchHHHHHHHH-HHcCCEEEEECCcccCCCHH-------HHHH--HcCCeEEEEcCHHHHhcCCCEE
Confidence            378999999995 57888888876 57899999988743211111       0000  0112233457999999999999


Q ss_pred             EEcC----CCCc--------ccccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          241 SLHP----VLDK--------TTYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       241 ~l~~----pl~~--------~t~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      ..-.    ....        -...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       221 yt~~w~smg~e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~lP~~Rg~EI~~e  275 (309)
T 4f2g_A          221 TTDVWTSMGFEAENEARKRAFADWCVDEEMMSHANSDALFMHCLPAHRGEEVTAG  275 (309)
T ss_dssp             EECCC------------CCSGGGGCBCHHHHTTSCTTCEEEECSSCCBTTTBCHH
T ss_pred             EecccccCcchhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCCCCCCCceecHH
Confidence            7643    1100        023557899999999999998875   67666554

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=96.94  E-value=0.0022  Score=60.28  Aligned_cols=70  Identities=23%  Similarity=0.268  Sum_probs=49.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l  242 (342)
                      .+|||||+|.||+..++.|.+.-++++. ++|+.++. .+.+.+.+       +.    ...+.++++++.  +.|+|++
T Consensus         3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~-------~~----~~~~~~~~~ll~~~~~D~V~i   70 (344)
T 3ezy_A            3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDR-LREMKEKL-------GV----EKAYKDPHELIEDPNVDAVLV   70 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHH-HHHHHHHH-------TC----SEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHH-HHHHHHHh-------CC----CceeCCHHHHhcCCCCCEEEE
Confidence            3799999999999999987433478877 58987653 23222222       11    013579999998  7999999


Q ss_pred             cCCCC
Q 019387          243 HPVLD  247 (342)
Q Consensus       243 ~~pl~  247 (342)
                      |+|..
T Consensus        71 ~tp~~   75 (344)
T 3ezy_A           71 CSSTN   75 (344)
T ss_dssp             CSCGG
T ss_pred             cCCCc
Confidence            99953

>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*

Probab=96.93  E-value=0.0026  Score=59.83  Aligned_cols=72  Identities=21%  Similarity=0.262  Sum_probs=50.4

Q ss_pred             CeEEEEecCHHHHHHHHHHH-hcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~-~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV~  241 (342)
                      .+|||||+|.||+..++.+. +.-++++. ++|+.++. .+.+.+.+       +.   ....+.++++++.+  .|+|+
T Consensus         3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~-~~~~~~~~-------g~---~~~~~~~~~~ll~~~~~D~V~   71 (344)
T 3mz0_A            3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEA-AQKVVEQY-------QL---NATVYPNDDSLLADENVDAVL   71 (344)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHH-HHHHHHHT-------TC---CCEEESSHHHHHHCTTCCEEE
T ss_pred             EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHH-HHHHHHHh-------CC---CCeeeCCHHHHhcCCCCCEEE
Confidence            37999999999999999874 23478877 67887653 23222222       11   12245799999986  89999


Q ss_pred             EcCCCCc
Q 019387          242 LHPVLDK  248 (342)
Q Consensus       242 l~~pl~~  248 (342)
                      +|+|...
T Consensus        72 i~tp~~~   78 (344)
T 3mz0_A           72 VTSWGPA   78 (344)
T ss_dssp             ECSCGGG
T ss_pred             ECCCchh
Confidence            9998543

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=96.92  E-value=0.00092  Score=63.99  Aligned_cols=39  Identities=26%  Similarity=0.490  Sum_probs=35.1

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      ..+.||+|+|+|.|.+|+.+++.+ +.+|++|+++|+++.
T Consensus        10 ~~~~~k~IlIlG~G~~g~~la~aa-~~~G~~vi~~d~~~~   48 (389)
T 3q2o_A           10 IILPGKTIGIIGGGQLGRMMALAA-KEMGYKIAVLDPTKN   48 (389)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSTT
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCCC
Confidence            457899999999999999999996 899999999998764

>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1

Probab=96.91  E-value=0.0037  Score=58.38  Aligned_cols=122  Identities=13%  Similarity=0.151  Sum_probs=66.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|+|||.|.||..+|..|+ .-|.  +|..+|+.++.. +.....+..... .. ....... .+. +.+++||+|+++
T Consensus         1 mkI~VIGaG~~G~~la~~l~-~~g~~~~V~l~D~~~~~~-~~~~~~l~~~~~-~~-~~~~i~~-~d~-~~~~~aDvViia   74 (319)
T 1a5z_A            1 MKIGIVGLGRVGSSTAFALL-MKGFAREMVLIDVDKKRA-EGDALDLIHGTP-FT-RRANIYA-GDY-ADLKGSDVVIVA   74 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSSHHHH-HHHHHHHHHHGG-GS-CCCEEEE-CCG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEeCChHHH-HHHHHHHHhhhh-hc-CCcEEEe-CCH-HHhCCCCEEEEc
Confidence            37999999999999999875 4466  999999986432 221111100000 00 0111111 243 457899999999


Q ss_pred             CCCCcccccc-----------cCHHH---HhcCCCCcEEEEcCCCcccCHHHHHHHH--HcCCceEE
Q 019387          244 PVLDKTTYHL-----------INKER---LATMKKEAILVNCSRGPVIDEVALVEHL--KQNPMFRV  294 (342)
Q Consensus       244 ~pl~~~t~~l-----------i~~~~---l~~mk~ga~lINvaRG~~vd~~aL~~aL--~~g~i~~a  294 (342)
                      +|... ..+.           +-.+.   +....+++.+|+++-+--+....+.+..  ...++.|.
T Consensus        75 v~~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~~~~~~~~~~~~~~~~rviG~  140 (319)
T 1a5z_A           75 AGVPQ-KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVDVLTYFFLKESGMDPRKVFGS  140 (319)
T ss_dssp             CCCCC-CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred             cCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHHHHHHHHHHHhCCChhhEEee
Confidence            98643 2111           00222   2222478899888654433223232322  23456554

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=96.91  E-value=0.0033  Score=59.41  Aligned_cols=70  Identities=14%  Similarity=0.131  Sum_probs=48.9

Q ss_pred             CCeEEEEecCHHHH-HHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEE
Q 019387          165 GQTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       165 gktvgIvG~G~IG~-~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV  240 (342)
                      -.+|||||+|.||+ ..++.|.+.-++++. ++|+.++. .+.+.+.+       +     ...+.++++++.  +.|+|
T Consensus        27 ~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~a~~~-------g-----~~~~~~~~~ll~~~~~D~V   93 (350)
T 3rc1_A           27 PIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDR-AKRFTERF-------G-----GEPVEGYPALLERDDVDAV   93 (350)
T ss_dssp             CEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHH-HHHHHHHH-------C-----SEEEESHHHHHTCTTCSEE
T ss_pred             ceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHH-HHHHHHHc-------C-----CCCcCCHHHHhcCCCCCEE
Confidence            35899999999999 788887433378876 67887643 23322222       1     223479999997  58999


Q ss_pred             EEcCCCC
Q 019387          241 SLHPVLD  247 (342)
Q Consensus       241 ~l~~pl~  247 (342)
                      ++|+|..
T Consensus        94 ~i~tp~~  100 (350)
T 3rc1_A           94 YVPLPAV  100 (350)
T ss_dssp             EECCCGG
T ss_pred             EECCCcH
Confidence            9999953

>4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A*

Probab=96.90  E-value=0.11  Score=49.37  Aligned_cols=108  Identities=13%  Similarity=0.133  Sum_probs=67.6

Q ss_pred             cccCCCeEEEEec--CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          161 NLLKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       161 ~~L~gktvgIvG~--G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      ..+.|.+|++||=  +++.++.+..+ ..||++|.+..|..-...+...+....+....+   ..+....++++.++++|
T Consensus       177 ~~l~gl~ia~vGD~~~~va~S~~~~~-~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g---~~v~~~~d~~eav~~aD  252 (358)
T 4h31_A          177 KALADIQFAYLGDARNNVGNSLMVGA-AKMGMDIRLVGPQAYWPDEELVAACQAIAKQTG---GKITLTENVAEGVQGCD  252 (358)
T ss_dssp             CCGGGCEEEEESCTTSHHHHHHHHHH-HHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHHTTCS
T ss_pred             CCcCceEEEecCCCCcccchHHHHHH-HhcCceEEEeCCcccCCCHHHHHHHHHHHHHcC---CcceeccCHHHHhccCc
Confidence            4688999999995  48999999886 689999999887532111111111101111111   12334578999999999


Q ss_pred             EEEEcCCCC----cc---------cccccCHHHHhcC-CCCcEEEEcC
Q 019387          239 VISLHPVLD----KT---------TYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       239 iV~l~~pl~----~~---------t~~li~~~~l~~m-k~ga~lINva  272 (342)
                      +|..-.-..    ++         ...-++.+.++.+ |++++|.-+.
T Consensus       253 vvyt~~w~s~~~~~~~~~~~~~~~~~y~v~~~~l~~~ak~~~i~mH~L  300 (358)
T 4h31_A          253 FLYTDVWVSMGESPEAWDERVALMKPYQVNMNVLKQTGNPNVKFMHCL  300 (358)
T ss_dssp             EEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHHTTCTTCEEEECS
T ss_pred             EEEEEEEEEcccCchhHHHHHHHHhCcccCHHHHHhcCCCCcEEECCC
Confidence            997543221    11         1234688888764 7788887654

>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=96.86  E-value=0.00024  Score=65.65  Aligned_cols=99  Identities=13%  Similarity=0.070  Sum_probs=61.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV~l~~  244 (342)
                      .+|+|||.|+||..+|..|+ .-|.+|.+++++.+.. +        .....+..+...  ..+..+.+ ..+|+|++++
T Consensus         3 mkI~iiGaGa~G~~~a~~L~-~~g~~V~~~~r~~~~~-~--------~~~~~g~~~~~~--~~~~~~~~~~~~D~vilav   70 (294)
T 3g17_A            3 LSVAIIGPGAVGTTIAYELQ-QSLPHTTLIGRHAKTI-T--------YYTVPHAPAQDI--VVKGYEDVTNTFDVIIIAV   70 (294)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HHCTTCEEEESSCEEE-E--------EESSTTSCCEEE--EEEEGGGCCSCEEEEEECS
T ss_pred             cEEEEECCCHHHHHHHHHHH-HCCCeEEEEEeccCcE-E--------EEecCCeeccce--ecCchHhcCCCCCEEEEeC
Confidence            57999999999999999985 4578999999875321 0        011112111111  11233333 7899999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd  278 (342)
                      |.. ++...+.. .-..++++..+|.+.-|=-..
T Consensus        71 k~~-~~~~~l~~-l~~~l~~~~~iv~~~nGi~~~  102 (294)
T 3g17_A           71 KTH-QLDAVIPH-LTYLAHEDTLIILAQNGYGQL  102 (294)
T ss_dssp             CGG-GHHHHGGG-HHHHEEEEEEEEECCSSCCCG
T ss_pred             Ccc-CHHHHHHH-HHHhhCCCCEEEEeccCcccH
Confidence            853 44444432 233456788999988775443

>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}

Probab=96.86  E-value=0.0019  Score=61.34  Aligned_cols=72  Identities=22%  Similarity=0.238  Sum_probs=48.0

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .++|+|+|.|.+|+.+|+.|++  ..+|.+.|+..+.. ++..+    ....   .........++.++++++|+|+.|+
T Consensus        16 ~mkilvlGaG~vG~~~~~~L~~--~~~v~~~~~~~~~~-~~~~~----~~~~---~~~d~~d~~~l~~~~~~~DvVi~~~   85 (365)
T 3abi_A           16 HMKVLILGAGNIGRAIAWDLKD--EFDVYIGDVNNENL-EKVKE----FATP---LKVDASNFDKLVEVMKEFELVIGAL   85 (365)
T ss_dssp             CCEEEEECCSHHHHHHHHHHTT--TSEEEEEESCHHHH-HHHTT----TSEE---EECCTTCHHHHHHHHTTCSEEEECC
T ss_pred             ccEEEEECCCHHHHHHHHHHhc--CCCeEEEEcCHHHH-HHHhc----cCCc---EEEecCCHHHHHHHHhCCCEEEEec
Confidence            3479999999999999999843  46888888876432 22111    0000   0111223356788999999999999


Q ss_pred             CC
Q 019387          245 VL  246 (342)
Q Consensus       245 pl  246 (342)
                      |.
T Consensus        86 p~   87 (365)
T 3abi_A           86 PG   87 (365)
T ss_dssp             CG
T ss_pred             CC
Confidence            84

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=96.86  E-value=0.0017  Score=56.95  Aligned_cols=96  Identities=15%  Similarity=0.128  Sum_probs=56.5

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcc--ccccCCHHHH-hhcCCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEV-LREADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l-l~~aDiV~l~  243 (342)
                      +|.|+|+|.+|+.+|+.| ...|.+|+++|++++.. +.....+       +.....  ......++++ +.++|+|+++
T Consensus         2 ~iiIiG~G~~G~~la~~L-~~~g~~v~vid~~~~~~-~~l~~~~-------~~~~i~gd~~~~~~l~~a~i~~ad~vi~~   72 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSM-LSRKYGVVIINKDRELC-EEFAKKL-------KATIIHGDGSHKEILRDAEVSKNDVVVIL   72 (218)
T ss_dssp             CEEEECCHHHHHHHHHHH-HHTTCCEEEEESCHHHH-HHHHHHS-------SSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred             EEEEECCCHHHHHHHHHH-HhCCCeEEEEECCHHHH-HHHHHHc-------CCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence            689999999999999998 57899999999887542 2211110       110000  0011234444 6789999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      +|....  +++-....+.+.+...+|-..+
T Consensus        73 ~~~d~~--n~~~~~~a~~~~~~~~iia~~~  100 (218)
T 3l4b_C           73 TPRDEV--NLFIAQLVMKDFGVKRVVSLVN  100 (218)
T ss_dssp             CSCHHH--HHHHHHHHHHTSCCCEEEECCC
T ss_pred             cCCcHH--HHHHHHHHHHHcCCCeEEEEEe
Confidence            985433  3333334444333444444333

>3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis}

Probab=96.85  E-value=0.0033  Score=61.68  Aligned_cols=115  Identities=13%  Similarity=0.159  Sum_probs=73.8

Q ss_pred             CCeEEEEecCHH--HHHHHHHHHh--c-CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          165 GQTVGVIGAGRI--GSAYARMMVE--G-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       165 gktvgIvG~G~I--G~~vA~~l~~--a-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      +.+|+|||-|.+  |..++..|++  . .| +|..||..++. ++.... ....+..   .+..+....++++.+++||+
T Consensus         5 ~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~-le~~~~-~~~~l~~---~~~~I~~TtD~~eAl~dADf   78 (450)
T 3fef_A            5 QIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEA-AQKNEV-IGNHSGN---GRWRYEAVSTLKKALSAADI   78 (450)
T ss_dssp             CEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHH-HHHHHH-HHTTSTT---SCEEEEEESSHHHHHTTCSE
T ss_pred             CCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHH-HHHHHH-HHHHHhc---cCCeEEEECCHHHHhcCCCE
Confidence            468999999998  5788877653  2 35 99999998743 222111 1111111   33445556799999999999


Q ss_pred             EEEcCCCC-----------cccccccCH------------------------HHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 019387          240 ISLHPVLD-----------KTTYHLINK------------------------ERLATMKKEAILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       240 V~l~~pl~-----------~~t~~li~~------------------------~~l~~mk~ga~lINvaRG~~vd~~aL~~  284 (342)
                      |+++++..           |.-.|+...                        +.+....|++.+||++-.--+-..++.+
T Consensus        79 VI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k  158 (450)
T 3fef_A           79 VIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYK  158 (450)
T ss_dssp             EEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHH
T ss_pred             EEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHH
Confidence            99999743           444555322                        2344456899999998765444444444


Q ss_pred             H
Q 019387          285 H  285 (342)
Q Consensus       285 a  285 (342)
                      .
T Consensus       159 ~  159 (450)
T 3fef_A          159 V  159 (450)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A*

Probab=96.83  E-value=0.0073  Score=62.84  Aligned_cols=141  Identities=16%  Similarity=0.173  Sum_probs=91.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHh---hhhh---hhhccCC--CCccccccCCHHHHhhcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVT---AYGQ---FLKANGE--QPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~---~~~~---~~~~~~~--~~~~~~~~~~l~~ll~~a  237 (342)
                      ++|||||.|.||..+|..++ ..|.+|+.+|..++........   .+..   .......  .........++++ +++|
T Consensus       317 ~~v~ViGaG~MG~gIA~~~a-~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~a  394 (742)
T 3zwc_A          317 SSVGVLGLGTMGRGIAISFA-RVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-LSTV  394 (742)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-GGSC
T ss_pred             cEEEEEcccHHHHHHHHHHH-hCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-HhhC
Confidence            68999999999999999975 6799999999987642211100   0000   0000111  1111222344444 6899


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      |+|+=++|-+-+.+.-+-++.=+.++++++|-..+.+  +.-..|.++++ ..-+.+++=-|.+-|  |-+-+.||
T Consensus       395 DlVIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSs--l~i~~ia~~~~-~p~r~ig~HFfnP~~~m~LVEvi~g  467 (742)
T 3zwc_A          395 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSA--LNVDDIASSTD-RPQLVIGTHFFSPAHVMRLLEVIPS  467 (742)
T ss_dssp             SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSS--SCHHHHHTTSS-CGGGEEEEECCSSTTTCCEEEEEEC
T ss_pred             CEEEEeccccHHHHHHHHHHHhhcCCCCceEEecCCc--CChHHHHhhcC-CccccccccccCCCCCCceEEEecC
Confidence            9999999988887777767777788999988876544  56667777764 455677887776544  43444444

>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum}

Probab=96.82  E-value=0.0032  Score=59.21  Aligned_cols=76  Identities=20%  Similarity=0.369  Sum_probs=47.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      ++|+|||.|.+|..+|..|+ .-|. +|..||+..+.. +.............. .+.......++ +.+++||+|+++.
T Consensus        15 ~kI~ViGaG~vG~~iA~~la-~~g~~~V~L~Di~~~~l-~~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~VI~av   90 (328)
T 2hjr_A           15 KKISIIGAGQIGSTIALLLG-QKDLGDVYMFDIIEGVP-QGKALDLNHCMALIG-SPAKIFGENNY-EYLQNSDVVIITA   90 (328)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSTTHH-HHHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEECCHHHH-HHHHHHHHhHhhccC-CCCEEEECCCH-HHHCCCCEEEEcC
Confidence            68999999999999999875 4466 899999986432 221100000000000 11122233566 6789999999998


Q ss_pred             C
Q 019387          245 V  245 (342)
Q Consensus       245 p  245 (342)
                      +
T Consensus        91 g   91 (328)
T 2hjr_A           91 G   91 (328)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans}

Probab=96.82  E-value=0.0024  Score=59.34  Aligned_cols=123  Identities=15%  Similarity=0.146  Sum_probs=66.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|+|+|.|.+|..+|..|+ ..|.  +|..+|+..+. .+........-. .. ........ .+. +.+++||+|+++
T Consensus         1 mkI~VIGaG~vG~~la~~la-~~g~~~eV~L~D~~~~~-~~~~~~~l~~~~-~~-~~~~~i~~-~~~-~a~~~aDvVIi~   74 (304)
T 2v6b_A            1 MKVGVVGTGFVGSTAAFALV-LRGSCSELVLVDRDEDR-AQAEAEDIAHAA-PV-SHGTRVWH-GGH-SELADAQVVILT   74 (304)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSSHHH-HHHHHHHHTTSC-CT-TSCCEEEE-ECG-GGGTTCSEEEEC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCCHHH-HHHHHHhhhhhh-hh-cCCeEEEE-CCH-HHhCCCCEEEEc
Confidence            37999999999999999874 5577  99999998642 222111110000 00 01111211 343 468899999999


Q ss_pred             CCCCcc-----------cccccCH--HHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 019387          244 PVLDKT-----------TYHLINK--ERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       244 ~pl~~~-----------t~~li~~--~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~a  294 (342)
                      .+....           +..++..  ..+....+++++|+++-+.-+....+.+.....++.|.
T Consensus        75 ~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~~~~~~~~~~~~~~rviG~  138 (304)
T 2v6b_A           75 AGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGS  138 (304)
T ss_dssp             C------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHHHHHHHHHHHSCSSCEEEC
T ss_pred             CCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchHHHHHHHHHhCChhcEEeC
Confidence            954221           1111110  23333458899999765543334444444444455444

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=96.81  E-value=0.0022  Score=59.96  Aligned_cols=70  Identities=11%  Similarity=0.173  Sum_probs=47.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l  242 (342)
                      .+|||||+|.||+..++.+.+.-++++. ++|++++.. +.+.       ...+..    ..+.++++++.  +.|+|++
T Consensus         6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~-~~~a-------~~~~~~----~~~~~~~~ll~~~~~D~V~i   73 (329)
T 3evn_A            6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESA-QAFA-------NKYHLP----KAYDKLEDMLADESIDVIYV   73 (329)
T ss_dssp             EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTT-CC----------CCCCS----CEESCHHHHHTCTTCCEEEE
T ss_pred             eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHH-HHHH-------HHcCCC----cccCCHHHHhcCCCCCEEEE
Confidence            4899999999999999887443467766 578876532 1111       111110    13579999998  7999999


Q ss_pred             cCCCC
Q 019387          243 HPVLD  247 (342)
Q Consensus       243 ~~pl~  247 (342)
                      |+|..
T Consensus        74 ~tp~~   78 (329)
T 3evn_A           74 ATINQ   78 (329)
T ss_dssp             CSCGG
T ss_pred             CCCcH
Confidence            99953

>1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B*

Probab=96.80  E-value=0.00091  Score=60.41  Aligned_cols=96  Identities=18%  Similarity=0.237  Sum_probs=61.6

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhccCCCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|+..-                  .+.+...+......   ....
T Consensus        27 ~~l~~~~VlVvG~Gg~G~~va~~La-~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~~~~~l~~~n---p~~~  102 (249)
T 1jw9_B           27 EALKDSRVLIVGLGGLGCAASQYLA-SAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRIN---PHIA  102 (249)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHC---TTSE
T ss_pred             HHHhCCeEEEEeeCHHHHHHHHHHH-HcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHHHHHHHHHHC---CCcE
Confidence            4688999999999999999999985 6787 8889998751                  11111111111100   0000


Q ss_pred             ccc-c---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          222 VTW-K---RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       222 ~~~-~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      ... .   ...++++++.++|+|+.+.+ +.+++.++++...+.
T Consensus       103 v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~  145 (249)
T 1jw9_B          103 ITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA  145 (249)
T ss_dssp             EEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH
T ss_pred             EEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc
Confidence            000 0   01245678899999999986 577888888765553

>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A

Probab=96.80  E-value=0.0089  Score=56.48  Aligned_cols=113  Identities=17%  Similarity=0.124  Sum_probs=66.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l  242 (342)
                      .+|||||+|.||+..++.+.+.-++++. ++|++++. .+.+.+.+       +.. .....+.++++++.  +.|+|++
T Consensus         7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~-~~~~a~~~-------~~~-~~~~~~~~~~~ll~~~~~D~V~i   77 (362)
T 1ydw_A            7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEK-AKAFATAN-------NYP-ESTKIHGSYESLLEDPEIDALYV   77 (362)
T ss_dssp             EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHH-HHHHHHHT-------TCC-TTCEEESSHHHHHHCTTCCEEEE
T ss_pred             eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHH-HHHHHHHh-------CCC-CCCeeeCCHHHHhcCCCCCEEEE
Confidence            4799999999999999887433367765 68887653 22222222       110 01123578999997  5999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCce
Q 019387          243 HPVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga-~lINv-aRG~~vd~~aL~~aL~~g~i~  292 (342)
                      |+|..  .+.   +-....++.|. +++.- ---.+-+-+.|.++.++..+.
T Consensus        78 ~tp~~--~h~---~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~  124 (362)
T 1ydw_A           78 PLPTS--LHV---EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQ  124 (362)
T ss_dssp             CCCGG--GHH---HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCC
T ss_pred             cCChH--HHH---HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCE
Confidence            99842  222   22334455665 44432 111223346677777665443

>3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ...

Probab=96.80  E-value=0.03  Score=52.09  Aligned_cols=111  Identities=18%  Similarity=0.304  Sum_probs=73.2

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~L~gktvgIvG~---G~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                      .+.|++|+++|=   |++.++.+..+ ..| |++|.+..|..-...+...+    .....+   ..+....+++++++++
T Consensus       151 ~l~gl~va~vGD~~~~rva~Sl~~~~-~~~~g~~v~~~~P~~~~~~~~~~~----~~~~~g---~~~~~~~d~~eav~~a  222 (310)
T 3csu_A          151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEKG---IAWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHH----HHHHTT---CCEEECSCGGGTTTTC
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HhCCCCEEEEECCcccccCHHHHH----HHHHcC---CeEEEEcCHHHHhcCC
Confidence            378999999998   59999999987 578 99999988754321111111    011112   1233457899999999


Q ss_pred             CEEEEcCCCCc----cc------ccccCHHHHhcCCCCcEEEEcC-CCcccCHH
Q 019387          238 DVISLHPVLDK----TT------YHLINKERLATMKKEAILVNCS-RGPVIDEV  280 (342)
Q Consensus       238 DiV~l~~pl~~----~t------~~li~~~~l~~mk~ga~lINva-RG~~vd~~  280 (342)
                      |+|..-.-..+    +.      ..-++.+.++.+|++++|.-+. ||.=|+.+
T Consensus       223 Dvvyt~~~q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~lPrg~EI~~e  276 (310)
T 3csu_A          223 DILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEIATD  276 (310)
T ss_dssp             SEEEECC-----------------CCBCGGGGTTCCTTCEEECCSCCSSSBCHH
T ss_pred             CEEEECCccccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCCCCCCeecHH
Confidence            99976644322    11      3556889999999999888875 65555544

>3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A*

Probab=96.78  E-value=0.0029  Score=59.72  Aligned_cols=104  Identities=16%  Similarity=0.264  Sum_probs=65.1

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc------------------hhHHHHHHhhhhhhhhccCCCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ------------------ATRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|...                  ..+.+...+......   ....
T Consensus        30 ~kL~~~~VlIvGaGGlGs~va~~La-~aGVg~ItlvD~D~Ve~SNL~RQ~l~~~~diG~~Ka~aaa~~L~~in---P~v~  105 (340)
T 3rui_A           30 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF---PLMD  105 (340)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCCBCCTTSTTTSTTCCGGGTTSBHHHHHHHHHHHHC---TTCE
T ss_pred             HHHhCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEecCCEeccccccccccCChhhcChHHHHHHHHHHHHhC---CCCE
Confidence            4689999999999999999999985 6677 677887643                  011111111111110   0000


Q ss_pred             cc-cc------------------ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          222 VT-WK------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       222 ~~-~~------------------~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .. +.                  ....++++++++|+|+.|+. +.+++.+++......   |.-+|+.+
T Consensus       106 v~~~~~~i~~~g~~~~~~~~~~~~~~~l~~~l~~~DlVvd~tD-n~~tR~lin~~c~~~---~~plI~aa  171 (340)
T 3rui_A          106 ATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  171 (340)
T ss_dssp             EEEECCCCCCTTSCCSCHHHHHHHHHHHHHHHHHCSEEEECCS-STGGGHHHHHHHHHT---TCEEEEEE
T ss_pred             EEEEeccccccCcccchhhhhcCCHHHHHhhhccCCEEEecCC-CHHHHHHHHHHHHHc---CCcEEEee
Confidence            00 00                  01235688999999999985 678999888876553   44566653

>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}

Probab=96.77  E-value=0.0072  Score=57.34  Aligned_cols=66  Identities=14%  Similarity=0.200  Sum_probs=47.2

Q ss_pred             CeEEEEecCHHHHH-HHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEE
Q 019387          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       166 ktvgIvG~G~IG~~-vA~~l~~af-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV  240 (342)
                      .+|||||+|.||+. .++.+ +.. +++|. ++|+.++...+    .+       .    ....+.++++++.  +.|+|
T Consensus         8 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~~~----~~-------~----~~~~~~~~~~ll~~~~~D~V   71 (364)
T 3e82_A            8 INIALIGYGFVGKTFHAPLI-RSVPGLNLAFVASRDEEKVKR----DL-------P----DVTVIASPEAAVQHPDVDLV   71 (364)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTSTTEEEEEEECSCHHHHHH----HC-------T----TSEEESCHHHHHTCTTCSEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-hhCCCeEEEEEEcCCHHHHHh----hC-------C----CCcEECCHHHHhcCCCCCEE
Confidence            47999999999997 67766 444 78886 67887743211    11       0    1224579999998  78999


Q ss_pred             EEcCCCC
Q 019387          241 SLHPVLD  247 (342)
Q Consensus       241 ~l~~pl~  247 (342)
                      ++|+|..
T Consensus        72 ~i~tp~~   78 (364)
T 3e82_A           72 VIASPNA   78 (364)
T ss_dssp             EECSCGG
T ss_pred             EEeCChH
Confidence            9999853

>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*

Probab=96.74  E-value=0.0046  Score=57.97  Aligned_cols=76  Identities=14%  Similarity=0.218  Sum_probs=47.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      ++|+|||.|.+|..+|..|+ .-|. +|..+|...+. .+.............. .........++ +.+++||+|+++.
T Consensus         5 ~kI~VIGaG~vG~~ia~~la-~~g~~~v~L~Di~~~~-l~~~~~~l~~~~~~~~-~~~~i~~t~d~-~al~~aD~Vi~a~   80 (322)
T 1t2d_A            5 AKIVLVGSGMIGGVMATLIV-QKNLGDVVLFDIVKNM-PHGKALDTSHTNVMAY-SNCKVSGSNTY-DDLAGADVVIVTA   80 (322)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSH-HHHHHHHHHTHHHHHT-CCCCEEEECCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCHHH-HHHHHHHHHhhhhhcC-CCcEEEECCCH-HHhCCCCEEEEeC
Confidence            58999999999999999875 4465 89999987643 2221111101000001 11122233566 6789999999998


Q ss_pred             C
Q 019387          245 V  245 (342)
Q Consensus       245 p  245 (342)
                      +
T Consensus        81 g   81 (322)
T 1t2d_A           81 G   81 (322)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A*

Probab=96.74  E-value=0.0039  Score=58.31  Aligned_cols=103  Identities=15%  Similarity=0.170  Sum_probs=63.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .+|||+|+|+||+.+++.+.+.-++++. ++|+++....              .   .+.....++++++.++|+|++|+
T Consensus         4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~--------------~---~gv~~~~d~~~ll~~~DvViiat   66 (320)
T 1f06_A            4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDT--------------K---TPVFDVADVDKHADDVDVLFLCM   66 (320)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSS--------------S---SCEEEGGGGGGTTTTCSEEEECS
T ss_pred             CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhh--------------c---CCCceeCCHHHHhcCCCEEEEcC
Confidence            3799999999999999987433367765 6787753210              0   11223457777778899999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cC-H-HHHHHHHHcCC
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV-ID-E-VALVEHLKQNP  290 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd-~-~aL~~aL~~g~  290 (342)
                      |....     -+.....++.|.-+|.-.-..+ +. . +.|.++.+++.
T Consensus        67 p~~~h-----~~~~~~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~~~  110 (320)
T 1f06_A           67 GSATD-----IPEQAPKFAQFACTVDTYDNHRDIPRHRQVMNEAATAAG  110 (320)
T ss_dssp             CTTTH-----HHHHHHHHTTTSEEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             CcHHH-----HHHHHHHHHCCCEEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence            85322     1233455666776665443332 22 2 45566665544

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=96.73  E-value=0.0044  Score=58.63  Aligned_cols=72  Identities=15%  Similarity=0.302  Sum_probs=50.6

Q ss_pred             CeEEEEecCHHHHHHHHHHH-hcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~-~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~  241 (342)
                      .+|||||+|.||+..++.+. +.-++++. ++|+.++.. +.+.+.+       +.   ....+.++++++.  +.|+|+
T Consensus        24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~-~~~a~~~-------g~---~~~~~~~~~~ll~~~~~D~V~   92 (357)
T 3ec7_A           24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRA-QAALDKY-------AI---EAKDYNDYHDLINDKDVEVVI   92 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHH-HHHHHHH-------TC---CCEEESSHHHHHHCTTCCEEE
T ss_pred             eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHH-HHHHHHh-------CC---CCeeeCCHHHHhcCCCCCEEE
Confidence            48999999999999999874 23478877 689887542 3322222       10   1224579999997  489999


Q ss_pred             EcCCCCc
Q 019387          242 LHPVLDK  248 (342)
Q Consensus       242 l~~pl~~  248 (342)
                      +|+|...
T Consensus        93 i~tp~~~   99 (357)
T 3ec7_A           93 ITASNEA   99 (357)
T ss_dssp             ECSCGGG
T ss_pred             EcCCcHH
Confidence            9999543

>2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae}

Probab=96.72  E-value=0.0026  Score=62.77  Aligned_cols=101  Identities=16%  Similarity=0.207  Sum_probs=59.3

Q ss_pred             cccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhc
Q 019387          159 VGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLRE  236 (342)
Q Consensus       159 ~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~  236 (342)
                      .+..+.+++|+|+|.|.+|+.+++.|++.-|.+|.+++++.+.. +.....       .+...  .......++.+++.+
T Consensus        17 ~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka-~~la~~-------~~~~~~~~D~~d~~~l~~~l~~   88 (467)
T 2axq_A           17 IEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANA-QALAKP-------SGSKAISLDVTDDSALDKVLAD   88 (467)
T ss_dssp             ------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHH-HHHHGG-------GTCEEEECCTTCHHHHHHHHHT
T ss_pred             cccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHH-HHHHHh-------cCCcEEEEecCCHHHHHHHHcC
Confidence            44678899999999999999999998543478999999986532 221110       01100  011112356778899


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      +|+|+.|+|....  .-+..   ..++.|..+++++
T Consensus        89 ~DvVIn~tp~~~~--~~v~~---a~l~~g~~vvd~~  119 (467)
T 2axq_A           89 NDVVISLIPYTFH--PNVVK---SAIRTKTDVVTSS  119 (467)
T ss_dssp             SSEEEECSCGGGH--HHHHH---HHHHHTCEEEECS
T ss_pred             CCEEEECCchhhh--HHHHH---HHHhcCCEEEEee
Confidence            9999999985321  11111   2234566777764

>3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis}

Probab=96.72  E-value=0.0022  Score=59.54  Aligned_cols=104  Identities=13%  Similarity=0.127  Sum_probs=60.0

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .+|||||+|+||+.+++.+.+.-++++. ++|+.++.. +.           .+..   +....++.+. .++|+|++|+
T Consensus        10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~~-~~-----------~g~~---~~~~~~l~~~-~~~DvViiat   73 (304)
T 3bio_A           10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAEV-PF-----------ELQP---FRVVSDIEQL-ESVDVALVCS   73 (304)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC-------------------CCTT---SCEESSGGGS-SSCCEEEECS
T ss_pred             CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHHH-HH-----------cCCC---cCCHHHHHhC-CCCCEEEECC
Confidence            4899999999999999987443578887 588876532 10           1111   1223455555 7899999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCC--C-cccCHHHHHHHHHcCC
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSR--G-PVIDEVALVEHLKQNP  290 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaR--G-~~vd~~aL~~aL~~g~  290 (342)
                      |..  ++.   +.....++.|.-++...-  + ...+.+.|.++.++..
T Consensus        74 p~~--~h~---~~~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~~g  117 (304)
T 3bio_A           74 PSR--EVE---RTALEILKKGICTADSFDIHDGILALRRSLGDAAGKSG  117 (304)
T ss_dssp             CHH--HHH---HHHHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHHHT
T ss_pred             Cch--hhH---HHHHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHhCC
Confidence            842  221   223344556766665421  2 2223355666665543

>1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5

Probab=96.72  E-value=0.0088  Score=54.65  Aligned_cols=104  Identities=16%  Similarity=0.207  Sum_probs=66.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .++++.|+|.|.+|+.++..| ...|+ +|.+++|..++ .+.+.+.++       .   .+  ..++.  +.++|+|+.
T Consensus       118 ~~~~vlvlGaGgaarav~~~L-~~~G~~~i~v~nRt~~k-a~~la~~~~-------~---~~--~~~~~--~~~~DivIn  181 (271)
T 1npy_A          118 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKT-GQYLAALYG-------Y---AY--INSLE--NQQADILVN  181 (271)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHH-HHHHHHHHT-------C---EE--ESCCT--TCCCSEEEE
T ss_pred             CCCEEEEECCcHHHHHHHHHH-HHCCCCEEEEEeCCHHH-HHHHHHHcC-------C---cc--chhhh--cccCCEEEE
Confidence            478999999999999999997 57897 79999998653 222222211       0   11  11222  468999999


Q ss_pred             cCCCCcccc-----cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          243 HPVLDKTTY-----HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       243 ~~pl~~~t~-----~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      ++|..-...     -.+..+.   ++++.+++|+.-.+.. + .|.+.-++
T Consensus       182 aTp~gm~~~~~~~~~~~~~~~---l~~~~~v~DlvY~P~~-T-~ll~~A~~  227 (271)
T 1npy_A          182 VTSIGMKGGKEEMDLAFPKAF---IDNASVAFDVVAMPVE-T-PFIRYAQA  227 (271)
T ss_dssp             CSSTTCTTSTTTTSCSSCHHH---HHHCSEEEECCCSSSS-C-HHHHHHHH
T ss_pred             CCCCCccCccccCCCCCCHHH---cCCCCEEEEeecCCCC-C-HHHHHHHH
Confidence            999754211     1244343   4568899999876543 3 45444444

>3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis}

Probab=96.71  E-value=0.18  Score=47.22  Aligned_cols=118  Identities=15%  Similarity=0.150  Sum_probs=74.4

Q ss_pred             cccCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchh--HHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc
Q 019387          161 NLLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       161 ~~L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~  236 (342)
                      ..+.|.+|++||=|  ++.++.+..+ ..||++|.+..|..-.  ..+...+.........+ ....+....++++.+++
T Consensus       157 ~~l~gl~va~vGD~~~~va~Sl~~~~-~~~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~-~g~~v~~~~d~~eav~~  234 (328)
T 3grf_A          157 NGFKGIKFAYCGDSMNNVTYDLMRGC-ALLGMECHVCCPDHKDFKPIKEVIDECEEIIAKHG-TGGSIKIFHDCKKGCEG  234 (328)
T ss_dssp             TTGGGCCEEEESCCSSHHHHHHHHHH-HHHTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHT-CCCEEEEESSHHHHHTT
T ss_pred             cccCCcEEEEeCCCCcchHHHHHHHH-HHcCCEEEEECChHhhhCCCHHHHHHHHHHHhhcc-CCCeEEEEcCHHHHhcC
Confidence            35889999999986  8888988886 5789999998875422  11111111000011100 01123345799999999


Q ss_pred             CCEEEEc----CC-CCcc--------cccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          237 ADVISLH----PV-LDKT--------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       237 aDiV~l~----~p-l~~~--------t~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      +|+|..-    +. ..++        ...-++.+.++.+|++++|.-+.   ||.=|+.+
T Consensus       235 aDvvytd~W~sm~iq~er~~~~~~~~~~y~vt~~~l~~a~~~ai~mH~lPa~Rg~EI~~e  294 (328)
T 3grf_A          235 VDVVYTDSWMSYHITKEQKEARLKVLTPFQVDDAVMAVTSKRSIFMNCLPATRGEEQTAS  294 (328)
T ss_dssp             CSEEEECCCC--------CCTHHHHHGGGCBCHHHHTTSCTTCEEEECSCCCTTTTBCHH
T ss_pred             CCEEEecCccccCCcHHHHHHHHHHhcCCCCCHHHHHhcCCCCEEECCCCCCCCCccCHH
Confidence            9999863    22 1111        12457899999999999998875   77666554

>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}

Probab=96.70  E-value=0.0036  Score=59.35  Aligned_cols=68  Identities=10%  Similarity=0.133  Sum_probs=47.7

Q ss_pred             CeEEEEecCHHHHH-HHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC--CEE
Q 019387          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA--DVI  240 (342)
Q Consensus       166 ktvgIvG~G~IG~~-vA~~l~~af-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a--DiV  240 (342)
                      .+|||||+|.||+. .++.| +.. ++++. ++|+.++.. +.+.+.+       +    ....+.++++++.+.  |+|
T Consensus         6 ~rigiIG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~-~~~a~~~-------~----~~~~~~~~~~ll~~~~vD~V   72 (359)
T 3m2t_A            6 IKVGLVGIGAQMQENLLPSL-LQMQDIRIVAACDSDLERA-RRVHRFI-------S----DIPVLDNVPAMLNQVPLDAV   72 (359)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTCTTEEEEEEECSSHHHH-GGGGGTS-------C----SCCEESSHHHHHHHSCCSEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-HhCCCcEEEEEEcCCHHHH-HHHHHhc-------C----CCcccCCHHHHhcCCCCCEE
Confidence            48999999999996 78887 454 78877 689877542 2211111       1    122457999999865  999


Q ss_pred             EEcCCC
Q 019387          241 SLHPVL  246 (342)
Q Consensus       241 ~l~~pl  246 (342)
                      ++|+|.
T Consensus        73 ~i~tp~   78 (359)
T 3m2t_A           73 VMAGPP   78 (359)
T ss_dssp             EECSCH
T ss_pred             EEcCCc
Confidence            999994

>1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2

Probab=96.67  E-value=0.0038  Score=61.72  Aligned_cols=128  Identities=12%  Similarity=0.244  Sum_probs=76.6

Q ss_pred             CCeEEEEecCHH--HHHHHHHHHh--cC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          165 GQTVGVIGAGRI--GSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       165 gktvgIvG~G~I--G~~vA~~l~~--af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      ..+|+|||.|.+  |.++|..|++  ++ |.+|..||+..+. .+............ ...+..+....++++.+++||+
T Consensus         3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~-l~~~~~~~~~~l~~-~~~~~~I~~ttD~~eal~dAD~   80 (480)
T 1obb_A            3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEER-LDAILTIAKKYVEE-VGADLKFEKTMNLDDVIIDADF   80 (480)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHH-HHHHHHHHHHHHHH-TTCCCEEEEESCHHHHHTTCSE
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHH-HHHHHHHHHHHhcc-CCCCcEEEEECCHHHHhCCCCE
Confidence            358999999997  5666766642  44 7899999998753 22211111111111 1123344445688888999999


Q ss_pred             EEEcCCCC-----------cccccccC----------------------------HHHHhcCCCCcEEEEcCCCcccCHH
Q 019387          240 ISLHPVLD-----------KTTYHLIN----------------------------KERLATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       240 V~l~~pl~-----------~~t~~li~----------------------------~~~l~~mk~ga~lINvaRG~~vd~~  280 (342)
                      |++++|..           +.-.+++.                            .+.+....|+|++||++----+-..
T Consensus        81 VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~  160 (480)
T 1obb_A           81 VINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTT  160 (480)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHH
T ss_pred             EEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHH
Confidence            99999741           01111111                            1344555689999999876655555


Q ss_pred             HHHHHHHcCCceEEE
Q 019387          281 ALVEHLKQNPMFRVG  295 (342)
Q Consensus       281 aL~~aL~~g~i~~aa  295 (342)
                      ++.+ +...++.|.+
T Consensus       161 ~~~k-~p~~rviG~c  174 (480)
T 1obb_A          161 LVTR-TVPIKAVGFC  174 (480)
T ss_dssp             HHHH-HSCSEEEEEC
T ss_pred             HHHH-CCCCcEEecC
Confidence            5555 4455666654

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=96.67  E-value=0.0032  Score=60.53  Aligned_cols=93  Identities=16%  Similarity=0.131  Sum_probs=67.4

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      --++-|+|.|.+|+++|+.+ +.+|++|+++|++++..                          + .+-+..+|-++...
T Consensus       204 ~~rL~IfGAGhva~ala~~a-~~lg~~V~v~D~R~~~~--------------------------~-~~~fp~a~~~~~~~  255 (386)
T 2we8_A          204 RPRMLVFGAIDFAAAVAQQG-AFLGYRVTVCDARPVFA--------------------------T-TARFPTADEVVVDW  255 (386)
T ss_dssp             CCEEEEECCSTHHHHHHHHH-HHTTCEEEEEESCTTTS--------------------------C-TTTCSSSSEEEESC
T ss_pred             CCEEEEECCCHHHHHHHHHH-HhCCCEEEEECCchhhc--------------------------c-cccCCCceEEEeCC
Confidence            34899999999999999985 79999999999876421                          1 11234566555444


Q ss_pred             CCCcccccccCHHHHhc------CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEE
Q 019387          245 VLDKTTYHLINKERLAT------MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVG  295 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~------mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aa  295 (342)
                      |          .+.+..      +.+++++|=..++.-.|...|.++|+++.....+
T Consensus       256 p----------~~~~~~~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG  302 (386)
T 2we8_A          256 P----------HRYLAAQAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIG  302 (386)
T ss_dssp             H----------HHHHHHHHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEE
T ss_pred             h----------HHHHHhhccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEE
Confidence            4          233333      6778888888899999999999999876344444

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=96.67  E-value=0.0017  Score=63.11  Aligned_cols=97  Identities=18%  Similarity=0.163  Sum_probs=60.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc--ccCCHHHH-hhcCCEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEV-LREADVIS  241 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~l-l~~aDiV~  241 (342)
                      +.+|.|+|+|++|+.+|+.| +..|.+|+++|..++.. +...        ..+.......  ....|+++ +.++|+|+
T Consensus         4 ~~~viIiG~Gr~G~~va~~L-~~~g~~vvvId~d~~~v-~~~~--------~~g~~vi~GDat~~~~L~~agi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGFGRFGQITGRLL-LSSGVKMVVLDHDPDHI-ETLR--------KFGMKVFYGDATRMDLLESAGAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECCSHHHHHHHHHH-HHTTCCEEEEECCHHHH-HHHH--------HTTCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred             CCeEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHHH-HHHH--------hCCCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence            45799999999999999998 68899999999987642 2211        1122111111  11223444 67899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ++++..+.  .+.-....+.+.+...+|--++
T Consensus        74 v~~~~~~~--n~~i~~~ar~~~p~~~Iiara~  103 (413)
T 3l9w_A           74 NAIDDPQT--NLQLTEMVKEHFPHLQIIARAR  103 (413)
T ss_dssp             ECCSSHHH--HHHHHHHHHHHCTTCEEEEEES
T ss_pred             ECCCChHH--HHHHHHHHHHhCCCCeEEEEEC
Confidence            99985333  3333445556666655544333

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=96.63  E-value=0.003  Score=59.98  Aligned_cols=97  Identities=13%  Similarity=0.200  Sum_probs=64.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .|++|.|+|.|.||..+++.+ +.+|++|++.+++++.... ....+       +.... .......+.++....|+|+.
T Consensus       187 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~~-~~~~l-------Ga~~v~~~~~~~~~~~~~~~~D~vid  257 (366)
T 1yqd_A          187 PGKHIGIVGLGGLGHVAVKFA-KAFGSKVTVISTSPSKKEE-ALKNF-------GADSFLVSRDQEQMQAAAGTLDGIID  257 (366)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCGGGHHH-HHHTS-------CCSEEEETTCHHHHHHTTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCHHHHHH-HHHhc-------CCceEEeccCHHHHHHhhCCCCEEEE
Confidence            588999999999999999984 8999999999987654311 11111       11110 00011123444456899999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      ++....     .-...++.|+++..+|+++..
T Consensus       258 ~~g~~~-----~~~~~~~~l~~~G~iv~~g~~  284 (366)
T 1yqd_A          258 TVSAVH-----PLLPLFGLLKSHGKLILVGAP  284 (366)
T ss_dssp             CCSSCC-----CSHHHHHHEEEEEEEEECCCC
T ss_pred             CCCcHH-----HHHHHHHHHhcCCEEEEEccC
Confidence            987432     125677889999999998743

>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*

Probab=96.62  E-value=0.0045  Score=57.79  Aligned_cols=108  Identities=17%  Similarity=0.258  Sum_probs=60.7

Q ss_pred             CCeEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .++|+|||.|.||.++|..|+. ++.-+|..+|...+ +.+.......... .....+....  .+..+.+++||+|+++
T Consensus         6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~-~~~~~~~dl~~~~-~~~~~~~~i~--~~~~~al~~aDvViia   81 (316)
T 1ldn_A            6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANES-KAIGDAMDFNHGK-VFAPKPVDIW--HGDYDDCRDADLVVIC   81 (316)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHH-HHHHHHHHHHHHT-TSSSSCCEEE--ECCGGGTTTCSEEEEC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcc-hHHHHHhhHHHHh-hhcCCCeEEE--cCcHHHhCCCCEEEEc
Confidence            3589999999999999988743 23348999999865 3332111110000 0000011111  1234568999999999


Q ss_pred             CCCCcccccc-----cC------H---HHHhcCCCCcEEEEcCCCcccCH
Q 019387          244 PVLDKTTYHL-----IN------K---ERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       244 ~pl~~~t~~l-----i~------~---~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      .|... ..+.     +.      .   +.+....|++.+++++-  .+|.
T Consensus        82 ~~~~~-~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tN--Pv~~  128 (316)
T 1ldn_A           82 AGANQ-KPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN--PVDI  128 (316)
T ss_dssp             CSCCC-CTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS--SHHH
T ss_pred             CCCCC-CCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCC--chHH
Confidence            87532 2221     10      1   22233357888999854  4444

>3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus}

Probab=96.62  E-value=0.0043  Score=55.85  Aligned_cols=82  Identities=16%  Similarity=0.146  Sum_probs=53.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .+|+|+|+|+||+.+++.+. ..+-++.+ +|+....                   ..++....++++++ ++|+++-+.
T Consensus         4 mkI~ViGaGrMG~~i~~~l~-~~~~eLva~~d~~~~~-------------------~~gv~v~~dl~~l~-~~DVvIDft   62 (243)
T 3qy9_A            4 MKILLIGYGAMNQRVARLAE-EKGHEIVGVIENTPKA-------------------TTPYQQYQHIADVK-GADVAIDFS   62 (243)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEEECSSCC---------------------CCSCBCSCTTTCT-TCSEEEECS
T ss_pred             eEEEEECcCHHHHHHHHHHH-hCCCEEEEEEecCccc-------------------cCCCceeCCHHHHh-CCCEEEEeC
Confidence            48999999999999999874 44337664 7876542                   01223356788888 899988544


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      +- +.+.     +.+. ++.|.-+|....|-
T Consensus        63 ~p-~a~~-----~~~~-l~~g~~vVigTTG~   86 (243)
T 3qy9_A           63 NP-NLLF-----PLLD-EDFHLPLVVATTGE   86 (243)
T ss_dssp             CH-HHHH-----HHHT-SCCCCCEEECCCSS
T ss_pred             Ch-HHHH-----HHHH-HhcCCceEeCCCCC
Confidence            31 1222     2334 77787777666663

>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis}

Probab=96.60  E-value=0.0029  Score=58.68  Aligned_cols=118  Identities=14%  Similarity=0.163  Sum_probs=64.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      .+|+|||.|+||..+|..| . -|.+|.++++.... .+...+ .+......+...  ......-++....+|+|+++++
T Consensus         3 mkI~IiGaGa~G~~~a~~L-~-~g~~V~~~~r~~~~-~~~l~~-~G~~~~~~~~~~--~~~~~~~~~~~~~~D~vilavK   76 (307)
T 3ego_A            3 LKIGIIGGGSVGLLCAYYL-S-LYHDVTVVTRRQEQ-AAAIQS-EGIRLYKGGEEF--RADCSADTSINSDFDLLVVTVK   76 (307)
T ss_dssp             CEEEEECCSHHHHHHHHHH-H-TTSEEEEECSCHHH-HHHHHH-HCEEEEETTEEE--EECCEEESSCCSCCSEEEECCC
T ss_pred             CEEEEECCCHHHHHHHHHH-h-cCCceEEEECCHHH-HHHHHh-CCceEecCCCee--cccccccccccCCCCEEEEEeC
Confidence            5899999999999999998 4 68999999987642 222111 110011011000  0000000234578999999998


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~a  294 (342)
                      . .++...+  +.++.++++. +|.+.-|=- .++.|.+.+-..++.++
T Consensus        77 ~-~~~~~~l--~~l~~~~~~~-ivs~~nGi~-~~e~l~~~~~~~~vl~g  120 (307)
T 3ego_A           77 Q-HQLQSVF--SSLERIGKTN-ILFLQNGMG-HIHDLKDWHVGHSIYVG  120 (307)
T ss_dssp             G-GGHHHHH--HHTTSSCCCE-EEECCSSSH-HHHHHHTCCCSCEEEEE
T ss_pred             H-HHHHHHH--HHhhcCCCCe-EEEecCCcc-HHHHHHHhCCCCcEEEE
Confidence            4 2334333  2334445666 888766632 22334443334444433

>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*

Probab=96.59  E-value=0.0038  Score=56.47  Aligned_cols=99  Identities=20%  Similarity=0.239  Sum_probs=69.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +..+|+++|+|+||+.+++.   . ++++. +|+ ...                 ++.  +.....++++++.++|+|+=
T Consensus        11 ~~~rV~i~G~GaIG~~v~~~---~-~leLv~v~~-~k~-----------------gel--gv~a~~d~d~lla~pD~VVe   66 (253)
T 1j5p_A           11 HHMTVLIIGMGNIGKKLVEL---G-NFEKIYAYD-RIS-----------------KDI--PGVVRLDEFQVPSDVSTVVE   66 (253)
T ss_dssp             CCCEEEEECCSHHHHHHHHH---S-CCSEEEEEC-SSC-----------------CCC--SSSEECSSCCCCTTCCEEEE
T ss_pred             ccceEEEECcCHHHHHHHhc---C-CcEEEEEEe-ccc-----------------ccc--CceeeCCHHHHhhCCCEEEE
Confidence            46799999999999999986   3 67654 566 111                 111  22234678888889999998


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCH---HHHHHHHHcCCc
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE---VALVEHLKQNPM  291 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~---~aL~~aL~~g~i  291 (342)
                      |.+.     .-+.+.....++.|.-+|-++-|.+.|.   +.|.++-++|.-
T Consensus        67 ~A~~-----~av~e~~~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~gg~  113 (253)
T 1j5p_A           67 CASP-----EAVKEYSLQILKNPVNYIIISTSAFADEVFRERFFSELKNSPA  113 (253)
T ss_dssp             CSCH-----HHHHHHHHHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTCSC
T ss_pred             CCCH-----HHHHHHHHHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHCCC
Confidence            8752     2334446677889999999999988887   445555555543

>2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A*

Probab=96.57  E-value=0.0042  Score=57.34  Aligned_cols=106  Identities=9%  Similarity=0.056  Sum_probs=64.9

Q ss_pred             CCeEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEE
Q 019387          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       165 gktvgIvG~-G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV  240 (342)
                      ..+|+|+|+ |++|+..++.+ +..|.+++ .+||.....                 ...+...+.+++++..  ..|++
T Consensus         7 ~~rVaViG~sG~~G~~~~~~l-~~~g~~~V~~V~p~~~g~-----------------~~~G~~vy~sl~el~~~~~~D~v   68 (288)
T 2nu8_A            7 NTKVICQGFTGSQGTFHSEQA-IAYGTKMVGGVTPGKGGT-----------------THLGLPVFNTVREAVAATGATAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHHCCCEE
T ss_pred             CCEEEEECCCChHHHHHHHHH-HHCCCeEEEEeCCCcccc-----------------eeCCeeccCCHHHHhhcCCCCEE
Confidence            458999999 99999999987 55688854 566642100                 0112334678999988  89999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCce
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMF  292 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~aL~~g~i~  292 (342)
                      ++++|.  +...-+-.+.++. ... .+|..+-|-- -+.+.|.++.++..+.
T Consensus        69 iI~tP~--~~~~~~~~ea~~~-Gi~-~iVi~t~G~~~~~~~~l~~~A~~~gv~  117 (288)
T 2nu8_A           69 VIYVPA--PFCKDSILEAIDA-GIK-LIITITEGIPTLDMLTVKVKLDEAGVR  117 (288)
T ss_dssp             EECCCG--GGHHHHHHHHHHT-TCS-EEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             EEecCH--HHHHHHHHHHHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            999994  3222222222332 222 3344554432 2344788888765554

>3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A

Probab=96.57  E-value=0.056  Score=52.63  Aligned_cols=117  Identities=16%  Similarity=0.255  Sum_probs=71.6

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCC---------chhHHHHHHhhhhhhhhccCCCCccccccCCH
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .++.|++|.|.|+|++|+.+|+.| ...|++|+ +.|.+         ....+....+..+.+   .+...  . ...+.
T Consensus       231 ~~l~g~~vaVqGfGnVG~~~a~~L-~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i---~~y~~--a-~~i~~  303 (440)
T 3aog_A          231 LQVEGARVAIQGFGNVGNAAARAF-HDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGV---RGYPK--A-EPLPA  303 (440)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSS---TTCTT--S-EECCH
T ss_pred             CCccCCEEEEeccCHHHHHHHHHH-HHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCc---ccCCC--c-eEcCc
Confidence            468899999999999999999997 67899998 44542         111222222211100   00000  1 11244


Q ss_pred             HHHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          231 DEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       231 ~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ++++ ..||+++-|..     .+.|+.+....++ -.+++-.+-+++- .++ .+.|.+..+.
T Consensus       304 ~ei~~~~~DIlvPcA~-----~n~i~~~na~~l~-ak~VvEgAN~p~t-~eA-~~iL~~~GI~  358 (440)
T 3aog_A          304 ADFWGLPVEFLVPAAL-----EKQITEQNAWRIR-ARIVAEGANGPTT-PAA-DDILLEKGVL  358 (440)
T ss_dssp             HHHTTCCCSEEEECSS-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HHH-HHHHHHHTCE
T ss_pred             hhhhcCCCcEEEecCC-----cCccchhhHHHcC-CcEEEecCccccC-HHH-HHHHHHCCCE
Confidence            5655 36999998865     3566666666664 5688888888864 443 3555554443

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=96.57  E-value=0.0018  Score=57.41  Aligned_cols=92  Identities=12%  Similarity=0.163  Sum_probs=56.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc--ccCCHHHH-hhcCCEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEV-LREADVIS  241 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~l-l~~aDiV~  241 (342)
                      .+++.|+|+|.+|+.+|+.| ...|. |+++|+.++.. +...         .+.......  ....|+++ +.++|.|+
T Consensus         9 ~~~viI~G~G~~G~~la~~L-~~~g~-v~vid~~~~~~-~~~~---------~~~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (234)
T 2aef_A            9 SRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRK-KVLR---------SGANFVHGDPTRVSDLEKANVRGARAVI   76 (234)
T ss_dssp             -CEEEEESCCHHHHHHHHHS-TTSEE-EEEESCGGGHH-HHHH---------TTCEEEESCTTCHHHHHHTTCTTCSEEE
T ss_pred             CCEEEEECCChHHHHHHHHH-HhCCe-EEEEECCHHHH-HHHh---------cCCeEEEcCCCCHHHHHhcCcchhcEEE
Confidence            56899999999999999997 67888 99999887532 2111         111100000  11234444 67899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEE
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVN  270 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lIN  270 (342)
                      +++|..  ..++.-....+.+.++..+|-
T Consensus        77 ~~~~~d--~~n~~~~~~a~~~~~~~~iia  103 (234)
T 2aef_A           77 VDLESD--SETIHCILGIRKIDESVRIIA  103 (234)
T ss_dssp             ECCSCH--HHHHHHHHHHHHHCSSSEEEE
T ss_pred             EcCCCc--HHHHHHHHHHHHHCCCCeEEE
Confidence            998853  334444455566677644443

>3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X

Probab=96.54  E-value=0.0073  Score=56.41  Aligned_cols=69  Identities=13%  Similarity=0.214  Sum_probs=48.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcC---CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGF---KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~af---g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDi  239 (342)
                      .++||||+|.||+..++.+ +..   ++++. ++|++++. .+.+.+.+       +..    ..+.++++++.  +.|+
T Consensus         3 ~rigiiG~G~ig~~~~~~l-~~~~~~~~~l~av~d~~~~~-a~~~a~~~-------~~~----~~~~~~~~ll~~~~vD~   69 (334)
T 3ohs_X            3 LRWGIVSVGLISSDFTAVL-QTLPRSEHQVVAVAARDLSR-AKEFAQKH-------DIP----KAYGSYEELAKDPNVEV   69 (334)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTSCTTTEEEEEEECSSHHH-HHHHHHHH-------TCS----CEESSHHHHHHCTTCCE
T ss_pred             cEEEEECchHHHHHHHHHH-HhCCCCCeEEEEEEcCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCCCCCE
Confidence            3799999999999999987 444   35655 57887643 23332222       111    13579999997  6999


Q ss_pred             EEEcCCCC
Q 019387          240 ISLHPVLD  247 (342)
Q Consensus       240 V~l~~pl~  247 (342)
                      |++|+|..
T Consensus        70 V~i~tp~~   77 (334)
T 3ohs_X           70 AYVGTQHP   77 (334)
T ss_dssp             EEECCCGG
T ss_pred             EEECCCcH
Confidence            99999853

>2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A*

Probab=96.53  E-value=0.0022  Score=56.74  Aligned_cols=68  Identities=15%  Similarity=0.243  Sum_probs=43.5

Q ss_pred             CeEEEEecCHHHHHHHHH-HHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARM-MVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~-l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+++|+|.|++|+.+++. .....|+++. ++|..+.....             ......+...+++++++++.|+++++
T Consensus        86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~-------------~i~gv~V~~~~dl~eli~~~D~ViIA  152 (215)
T 2vt3_A           86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGT-------------EVGGVPVYNLDDLEQHVKDESVAILT  152 (215)
T ss_dssp             -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTC-------------EETTEEEEEGGGHHHHCSSCCEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHh-------------HhcCCeeechhhHHHHHHhCCEEEEe
Confidence            479999999999999993 1235578776 57877653210             00112222356899999777999999


Q ss_pred             CCC
Q 019387          244 PVL  246 (342)
Q Consensus       244 ~pl  246 (342)
                      +|.
T Consensus       153 vPs  155 (215)
T 2vt3_A          153 VPA  155 (215)
T ss_dssp             SCH
T ss_pred             cCc
Confidence            994

>1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=96.49  E-value=0.0054  Score=57.80  Aligned_cols=32  Identities=25%  Similarity=0.385  Sum_probs=25.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHhc--CCcEEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~a--fg~~V~~~d~  197 (342)
                      .+|||+|+|.||+.+.|.|...  =+++|.+.+.
T Consensus         1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~   34 (332)
T 1hdg_O            1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAIND   34 (332)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEEC
T ss_pred             CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEc
Confidence            3799999999999999987543  3588886544

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=96.42  E-value=0.0075  Score=56.87  Aligned_cols=31  Identities=32%  Similarity=0.487  Sum_probs=25.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d  196 (342)
                      .+|||+|+|+||+.++|.|...-+++|.+..
T Consensus         4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~   34 (335)
T 1u8f_O            4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAIN   34 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSEEEEEE
T ss_pred             eEEEEEccCHHHHHHHHHHHcCCCcEEEEec
Confidence            3899999999999999987544578887654

>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T*

Probab=96.40  E-value=0.018  Score=53.25  Aligned_cols=105  Identities=16%  Similarity=0.172  Sum_probs=59.4

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ..+|+|||.|.||..+|..|+ .-|.  +|..+|+..+.......+..... .-.+  +.......+. +.+..||+|++
T Consensus         7 ~mkI~IiGaG~vG~~~a~~l~-~~g~~~~V~l~d~~~~~~~~~~~~~~~~~-~~~~--~~~v~~~~~~-~~~~~aD~Vii   81 (319)
T 1lld_A            7 PTKLAVIGAGAVGSTLAFAAA-QRGIAREIVLEDIAKERVEAEVLDMQHGS-SFYP--TVSIDGSDDP-EICRDADMVVI   81 (319)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSSHHHHHHHHHHHHHTG-GGST--TCEEEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCChhHHHHHHHHHHhhh-hhcC--CeEEEeCCCH-HHhCCCCEEEE
Confidence            468999999999999999875 5577  99999998643210001000000 0000  1111111233 45789999999


Q ss_pred             cCCCCcccccc------------cC--HHHHhcCCCCcEEEEcCCCc
Q 019387          243 HPVLDKTTYHL------------IN--KERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       243 ~~pl~~~t~~l------------i~--~~~l~~mk~ga~lINvaRG~  275 (342)
                      +++.. ...+.            +.  ...+....+++++|+++-|-
T Consensus        82 ~v~~~-~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~  127 (319)
T 1lld_A           82 TAGPR-QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV  127 (319)
T ss_dssp             CCCCC-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred             CCCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCch
Confidence            99632 22210            00  11222236788999987654

>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A*

Probab=96.39  E-value=0.018  Score=53.26  Aligned_cols=124  Identities=16%  Similarity=0.238  Sum_probs=71.7

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      +|+|+|.|.+|.++|..|+ .-|.  +|..||+.++.......+. ........ .+.......+ .+.+++||+|+++.
T Consensus         2 kI~ViGaG~vG~~la~~l~-~~~~~~~v~L~D~~~~~~~g~~~dl-~~~~~~~~-~~~~i~~t~d-~~a~~~aDiVViaa   77 (294)
T 1oju_A            2 KLGFVGAGRVGSTSAFTCL-LNLDVDEIALVDIAEDLAVGEAMDL-AHAAAGID-KYPKIVGGAD-YSLLKGSEIIVVTA   77 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HHSCCSEEEEECSSHHHHHHHHHHH-HHHHHTTT-CCCEEEEESC-GGGGTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECChHHHHHHHHHH-HhhhhhcC-CCCEEEEeCC-HHHhCCCCEEEECC
Confidence            7999999999999999875 3355  9999999875421111110 00000000 1222222335 77889999999997


Q ss_pred             CCCcccccc-----c--CH-------HHHhcCCCCcEEEEcCCCcccCHHHHHHHHH----cCCceEEE--Ee
Q 019387          245 VLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSRGPVIDEVALVEHLK----QNPMFRVG--LD  297 (342)
Q Consensus       245 pl~~~t~~l-----i--~~-------~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~----~g~i~~aa--LD  297 (342)
                      +.. ...++     +  |.       +.+....|++++++++  +.+|.-..+-.-.    ..++.|.+  ||
T Consensus        78 g~~-~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~~t~~~~k~~g~p~~rviG~gt~LD  147 (294)
T 1oju_A           78 GLA-RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVMTYIMWKESGKPRNEVFGMGNQLD  147 (294)
T ss_dssp             CCC-CCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHHHHHHHHHSCCCTTSEEECSHHHH
T ss_pred             CCC-CCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchHHHHHHHHhcCCCHHHEeecccccH
Confidence            643 22222     1  11       2455567899999998  5566543322111    24566664  56

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=96.35  E-value=0.0081  Score=56.56  Aligned_cols=68  Identities=16%  Similarity=0.197  Sum_probs=48.2

Q ss_pred             CeEEEEecCHHHHH-HHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEE
Q 019387          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (342)
Q Consensus       166 ktvgIvG~G~IG~~-vA~~l~~af-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV  240 (342)
                      .+|||||+|.||+. .++.+ +.. ++++. ++|+.++...    +.+           .....+.++++++..  .|+|
T Consensus         8 ~rvgiiG~G~~g~~~~~~~~-~~~~~~~l~av~d~~~~~~~----~~~-----------~~~~~~~~~~~ll~~~~vD~V   71 (352)
T 3kux_A            8 IKVGLLGYGYASKTFHAPLI-MGTPGLELAGVSSSDASKVH----ADW-----------PAIPVVSDPQMLFNDPSIDLI   71 (352)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTSTTEEEEEEECSCHHHHH----TTC-----------SSCCEESCHHHHHHCSSCCEE
T ss_pred             ceEEEECCCHHHHHHHHHHH-hhCCCcEEEEEECCCHHHHH----hhC-----------CCCceECCHHHHhcCCCCCEE
Confidence            48999999999997 77776 444 78876 6788765321    000           122345799999976  8999


Q ss_pred             EEcCCCCcc
Q 019387          241 SLHPVLDKT  249 (342)
Q Consensus       241 ~l~~pl~~~  249 (342)
                      ++|+|...+
T Consensus        72 ~i~tp~~~H   80 (352)
T 3kux_A           72 VIPTPNDTH   80 (352)
T ss_dssp             EECSCTTTH
T ss_pred             EEeCChHHH
Confidence            999996443

>3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A*

Probab=96.34  E-value=0.0098  Score=55.85  Aligned_cols=108  Identities=19%  Similarity=0.239  Sum_probs=60.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .+++|+|+|.|.||+.+|..|+ ..|.  ++..+|...... +.......... ... .+...  ..+..+.+++||+|+
T Consensus         8 ~~~kV~ViGaG~vG~~~a~~l~-~~~~~~el~l~D~~~~k~-~g~a~DL~~~~-~~~-~~~~i--~~~~~~a~~~aDiVv   81 (326)
T 3vku_A            8 DHQKVILVGDGAVGSSYAYAMV-LQGIAQEIGIVDIFKDKT-KGDAIDLEDAL-PFT-SPKKI--YSAEYSDAKDADLVV   81 (326)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSCHHHH-HHHHHHHHTTG-GGS-CCCEE--EECCGGGGTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEeCChHHH-HHHHhhHhhhh-hhc-CCcEE--EECcHHHhcCCCEEE
Confidence            4679999999999999998874 3344  899999976432 21111000000 000 01111  123346689999999


Q ss_pred             EcCCCCc---ccc-cccC---------HHHHhcCCCCcEEEEcCCCcccCH
Q 019387          242 LHPVLDK---TTY-HLIN---------KERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       242 l~~pl~~---~t~-~li~---------~~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      ++.....   +|+ .++.         .+.+....|++++++++  +.+|.
T Consensus        82 i~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvdi  130 (326)
T 3vku_A           82 ITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVDI  130 (326)
T ss_dssp             ECCCCC----------------CHHHHHHHHHTTTCCSEEEECS--SSHHH
T ss_pred             ECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchHH
Confidence            9865321   122 2221         13445556789999996  45543

>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1

Probab=96.34  E-value=0.007  Score=56.93  Aligned_cols=109  Identities=6%  Similarity=0.067  Sum_probs=63.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      ..++|+|+|.|.||..+|..++ ..|.  +|..+|...+.......+-...  .... .........+.++ +++||+|+
T Consensus        20 ~~~kV~ViGaG~vG~~~a~~la-~~g~~~ev~L~Di~~~~~~g~a~DL~~~--~~~~-~~~~i~~t~d~~~-~~daDiVI   94 (330)
T 3ldh_A           20 SYNKITVVGCDAVGMADAISVL-MKDLADEVALVDVMEDKLKGEMMDLEHG--SLFL-HTAKIVSGKDYSV-SAGSKLVV   94 (330)
T ss_dssp             CCCEEEEESTTHHHHHHHHHHH-HHCCCSEEEEECSCHHHHHHHHHHHHHH--GGGS-CCSEEEEESSSCS-CSSCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCCeEEEEECCHHHHHHHHHHhhhh--hhcc-cCCeEEEcCCHHH-hCCCCEEE
Confidence            5689999999999999998874 4455  8999999764321111110000  0000 0111222345665 89999999


Q ss_pred             EcCCCCc---ccc-cccCH---------HHHhcCCCCcEEEEcCCCcccCH
Q 019387          242 LHPVLDK---TTY-HLINK---------ERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       242 l~~pl~~---~t~-~li~~---------~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      ++.....   +|| .++..         +.+....|++++++++-  .+|.
T Consensus        95 itaG~p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvtN--Pvdi  143 (330)
T 3ldh_A           95 ITAGARQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHPE--LGTD  143 (330)
T ss_dssp             ECCSCCCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECSS--SHHH
T ss_pred             EeCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCCC--ccHH
Confidence            9865321   122 12211         23445578999999984  4443

>3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A

Probab=96.32  E-value=0.0081  Score=56.81  Aligned_cols=67  Identities=10%  Similarity=0.211  Sum_probs=47.5

Q ss_pred             CeEEEEecCHHHHH-HHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEE
Q 019387          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       166 ktvgIvG~G~IG~~-vA~~l~~af-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV  240 (342)
                      .+|||||+|.||+. .++.+ +.. ++++. ++|+.++.. .   +.+       +    ....+.++++++.  +.|+|
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~~-~---~~~-------~----~~~~~~~~~~ll~~~~vD~V   69 (358)
T 3gdo_A            6 IKVGILGYGLSGSVFHGPLL-DVLDEYQISKIMTSRTEEV-K---RDF-------P----DAEVVHELEEITNDPAIELV   69 (358)
T ss_dssp             EEEEEECCSHHHHHTTHHHH-TTCTTEEEEEEECSCHHHH-H---HHC-------T----TSEEESSTHHHHTCTTCCEE
T ss_pred             ceEEEEccCHHHHHHHHHHH-hhCCCeEEEEEEcCCHHHH-H---hhC-------C----CCceECCHHHHhcCCCCCEE
Confidence            48999999999997 67776 454 78876 578876431 1   111       0    1224579999998  78999


Q ss_pred             EEcCCCCc
Q 019387          241 SLHPVLDK  248 (342)
Q Consensus       241 ~l~~pl~~  248 (342)
                      ++|+|...
T Consensus        70 ~i~tp~~~   77 (358)
T 3gdo_A           70 IVTTPSGL   77 (358)
T ss_dssp             EECSCTTT
T ss_pred             EEcCCcHH
Confidence            99999643

>3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans}

Probab=96.31  E-value=0.0051  Score=58.53  Aligned_cols=92  Identities=13%  Similarity=0.144  Sum_probs=65.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      -++-|+|-|.+|+++|+.+ +.+|++|+++|++++..                          + .+-++.+|-++...|
T Consensus       200 ~~L~I~GaGhva~aLa~la-~~lgf~V~v~D~R~~~~--------------------------~-~~~fp~a~~v~~~~p  251 (362)
T 3on5_A          200 ERLIIFGAGPDVPPLVTFA-SNVGFYTVVTDWRPNQC--------------------------E-KHFFPDADEIIVDFP  251 (362)
T ss_dssp             EEEEEECCSTTHHHHHHHH-HHHTEEEEEEESCGGGG--------------------------C-GGGCTTCSEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCeEEEECCCcccc--------------------------c-cccCCCceEEecCCH
Confidence            4799999999999999985 79999999999987531                          0 111345665554444


Q ss_pred             CCcccccccCHHHHhc--CCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 019387          246 LDKTTYHLINKERLAT--MKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       246 l~~~t~~li~~~~l~~--mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaL  296 (342)
                                .+.+..  +.+++++|=..++.-.|...|.++|+. .....++
T Consensus       252 ----------~~~~~~~~~~~~t~vvv~TH~h~~D~~~L~~aL~~-~~~YiG~  293 (362)
T 3on5_A          252 ----------ADFLRKFLIRPDDFVLIMTHHFQKDQEILHFLLEK-ELRYIGI  293 (362)
T ss_dssp             ----------HHHHHHSCCCTTCEEEECCSCHHHHHHHHHHHSSS-CCSEEEE
T ss_pred             ----------HHHHhhcCCCCCeEEEEEeCCchhhHHHHHHHhcC-CCCEEEE
Confidence                      334444  567788888888888888888888876 3444443

>4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A

Probab=96.30  E-value=0.075  Score=49.33  Aligned_cols=104  Identities=16%  Similarity=0.286  Sum_probs=64.9

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~L~gktvgIvG~---G~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                      .+.|.+|++||=   |++.++.+..+ ..| |++|.+..|..-...+...+.    ....+   ..+....++++.++++
T Consensus       148 ~l~glkva~vGD~~~~rva~Sl~~~~-~~~~G~~v~~~~P~~~~~~~~~~~~----~~~~g---~~~~~~~d~~eav~~a  219 (306)
T 4ekn_B          148 RIDGIKIAFVGDLKYGRTVHSLVYAL-SLFENVEMYFVSPKELRLPKDIIED----LKAKN---IKFYEKESLDDLDDDI  219 (306)
T ss_dssp             CSTTCEEEEESCTTTCHHHHHHHHHH-HTSSSCEEEEECCGGGCCCHHHHHH----HHHTT---CCEEEESCGGGCCTTC
T ss_pred             CcCCCEEEEEcCCCCCcHHHHHHHHH-HhcCCCEEEEECCcccccCHHHHHH----HHHcC---CEEEEEcCHHHHhcCC
Confidence            378999999997   58999999986 689 999999887532111111111    11111   1223357899999999


Q ss_pred             CEEEEcCCCCc-----cc------ccccCHHHHhcCCCCcEEEEcC-CCc
Q 019387          238 DVISLHPVLDK-----TT------YHLINKERLATMKKEAILVNCS-RGP  275 (342)
Q Consensus       238 DiV~l~~pl~~-----~t------~~li~~~~l~~mk~ga~lINva-RG~  275 (342)
                      |+|....-..+     +.      ..-++.+.++.  ++++|.-+. ||.
T Consensus       220 Dvvy~~~~q~er~~~~~e~~~~~~~y~v~~~~l~~--~~ai~mH~lPRg~  267 (306)
T 4ekn_B          220 DVLYVTRIQKERFPDPNEYEKVKGSYKIKREYVEG--KKFIIMHPLPRVD  267 (306)
T ss_dssp             SEEEECCCCGGGCCSHHHHHHHHHHHCBCHHHHTT--CCCEEECCSCCSS
T ss_pred             CEEEeCCcccccCCCHHHHHHhccCcEECHHHHcC--CCCEEECCCCCCC
Confidence            99986532111     11      13457777766  666666554 553

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=96.30  E-value=0.012  Score=55.14  Aligned_cols=69  Identities=12%  Similarity=0.168  Sum_probs=47.1

Q ss_pred             eEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEEEE
Q 019387          167 TVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  242 (342)
Q Consensus       167 tvgIvG~G~IG~~-vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV~l  242 (342)
                      ++||||+|.||+. .+..+.+.=+++|. ++|++++. .+++-+.|       +..    ..+.+++++++.  -|+|++
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~-a~~~a~~~-------g~~----~~y~d~~ell~~~~iDaV~I   92 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTR-AREMADRF-------SVP----HAFGSYEEMLASDVIDAVYI   92 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHH-HHHHHHHH-------TCS----EEESSHHHHHHCSSCSEEEE
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHH-HHHHHHHc-------CCC----eeeCCHHHHhcCCCCCEEEE
Confidence            7999999999986 46665333478887 57887653 33333333       111    135799999964  799999


Q ss_pred             cCCCC
Q 019387          243 HPVLD  247 (342)
Q Consensus       243 ~~pl~  247 (342)
                      |+|..
T Consensus        93 ~tP~~   97 (350)
T 4had_A           93 PLPTS   97 (350)
T ss_dssp             CSCGG
T ss_pred             eCCCc
Confidence            99953

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=96.30  E-value=0.004  Score=59.44  Aligned_cols=71  Identities=18%  Similarity=0.333  Sum_probs=47.6

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .+.|++|||+|.|.+|+.+++.+ +.+|++|+++|+++.......       . . ......+.....+.++++++|+|+
T Consensus         9 ~~~~~~IlIlG~G~lg~~la~aa-~~lG~~viv~d~~~~~p~~~~-------a-d-~~~~~~~~d~~~l~~~~~~~dvi~   78 (377)
T 3orq_A            9 LKFGATIGIIGGGQLGKMMAQSA-QKMGYKVVVLDPSEDCPCRYV-------A-H-EFIQAKYDDEKALNQLGQKCDVIT   78 (377)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCTTCTTGGG-------S-S-EEEECCTTCHHHHHHHHHHCSEEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCChhhhh-------C-C-EEEECCCCCHHHHHHHHHhCCcce
Confidence            46799999999999999999995 899999999998764321110       0 0 000001111234667788899886


Q ss_pred             E
Q 019387          242 L  242 (342)
Q Consensus       242 l  242 (342)
                      .
T Consensus        79 ~   79 (377)
T 3orq_A           79 Y   79 (377)
T ss_dssp             E
T ss_pred             e
Confidence            5

>3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis}

Probab=96.28  E-value=0.43  Score=45.08  Aligned_cols=110  Identities=13%  Similarity=0.117  Sum_probs=67.5

Q ss_pred             cccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      ..|.|++|++||=+ ++.++.+..+ ..||++|.+..|..-...+...+....... .......+....+++++++++|+
T Consensus       184 ~~l~glkva~vGD~~nva~Sl~~~l-~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~-~~~~g~~~~~~~d~~eav~~aDV  261 (353)
T 3sds_A          184 LGLEGLKIAWVGDANNVLFDLAIAA-TKMGVNVAVATPRGYEIPSHIVELIQKARE-GVQSPGNLTQTTVPEVAVKDADV  261 (353)
T ss_dssp             CSCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHHHT-TCSSCCCEEEESCHHHHTTTCSE
T ss_pred             cccCCCEEEEECCCchHHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHhhh-hccCCCeEEEECCHHHHhcCCCE
Confidence            45899999999975 5777777775 579999999887532111111110000000 00111233345799999999999


Q ss_pred             EEEcC--CCCcc----------cccccCHHHHhc--CCCCcEEEEcC
Q 019387          240 ISLHP--VLDKT----------TYHLINKERLAT--MKKEAILVNCS  272 (342)
Q Consensus       240 V~l~~--pl~~~----------t~~li~~~~l~~--mk~ga~lINva  272 (342)
                      |..-.  +...+          ...-++.+.++.  +|++++|.-+.
T Consensus       262 vytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL  308 (353)
T 3sds_A          262 IVTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL  308 (353)
T ss_dssp             EEECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred             EEeCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence            97643  22221          124578899988  89999988775

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=96.27  E-value=0.0066  Score=57.35  Aligned_cols=97  Identities=18%  Similarity=0.131  Sum_probs=60.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHH-HhhcCCEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDE-VLREADVIS  241 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~-ll~~aDiV~  241 (342)
                      .|++|.|+|.|.||..+++. ++.+|++|++.+++++.....  ..+       +.... ......++.+ +....|+|+
T Consensus       179 ~g~~VlV~GaG~vG~~~~ql-ak~~Ga~Vi~~~~~~~~~~~~--~~l-------Ga~~v~~~~~~~~~~~~~~~~~D~vi  248 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLI-SKAMGAETYVISRSSRKREDA--MKM-------GADHYIATLEEGDWGEKYFDTFDLIV  248 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHHTCEEEEEESSSTTHHHH--HHH-------TCSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEcCCHHHHHHH--HHc-------CCCEEEcCcCchHHHHHhhcCCCEEE
Confidence            48899999999999999998 489999999999876543111  111       11111 0111103322 224689999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .+.+.++  ... -...++.+++|..++.++.
T Consensus       249 d~~g~~~--~~~-~~~~~~~l~~~G~iv~~g~  277 (360)
T 1piw_A          249 VCASSLT--DID-FNIMPKAMKVGGRIVSISI  277 (360)
T ss_dssp             ECCSCST--TCC-TTTGGGGEEEEEEEEECCC
T ss_pred             ECCCCCc--HHH-HHHHHHHhcCCCEEEEecC
Confidence            9987421  011 2345677888888888764

>1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A

Probab=96.26  E-value=0.0043  Score=56.00  Aligned_cols=96  Identities=21%  Similarity=0.226  Sum_probs=60.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhccCCCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|+|.|.+|..+|+.|+ ..|. ++..+|...-                  .+.+...+.....   .....
T Consensus        24 ~~l~~~~VlvvG~GglG~~va~~La-~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~---np~~~   99 (251)
T 1zud_1           24 QKLLDSQVLIIGLGGLGTPAALYLA-GAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQL---NPDIQ   99 (251)
T ss_dssp             HHHHTCEEEEECCSTTHHHHHHHHH-HTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHH---CTTSE
T ss_pred             HHHhcCcEEEEccCHHHHHHHHHHH-HcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHHHHHHHHHH---CCCCE
Confidence            4688999999999999999999985 6777 7778876431                  1111111111000   00000


Q ss_pred             ccc-c---ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          222 VTW-K---RASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       222 ~~~-~---~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      ... .   ...+++++++++|+|+.|.+ +.+++.++++...+.
T Consensus       100 v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~~  142 (251)
T 1zud_1          100 LTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVAL  142 (251)
T ss_dssp             EEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHHT
T ss_pred             EEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHHh
Confidence            000 0   11246778899999999987 678888888876653

>2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A

Probab=96.25  E-value=0.16  Score=49.01  Aligned_cols=118  Identities=19%  Similarity=0.231  Sum_probs=72.9

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhc-CCcEEE-EEcCC---------chhHHHHHHhhhhhhhhccCCCCccccccC
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEG-FKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRAS  228 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~a-fg~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  228 (342)
                      |.++.|++|.|.|+|++|+.+|+.| .. .|++|+ +.|.+         ....+..+.+..+.+   .+...  . ...
T Consensus       204 g~~l~g~~vaVqG~GnVG~~~a~~L-~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l---~~y~~--a-~~~  276 (415)
T 2tmg_A          204 GIDPKKATVAVQGFGNVGQFAALLI-SQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTV---VTYPK--G-ERI  276 (415)
T ss_dssp             TCCTTTCEEEEECCSHHHHHHHHHH-HHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCS---TTCSS--S-EEE
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHH-HHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCc---ccCCC--c-eEc
Confidence            3478999999999999999999987 56 899998 34542         111222222111100   00000  0 112


Q ss_pred             CHHHHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          229 SMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       229 ~l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +.++++ ..||+++-|..     .+.|+.+....++ ..+++--+-+++- .++ .+.|.+..+.
T Consensus       277 ~~~eil~~~~DIliP~A~-----~n~i~~~~a~~l~-ak~V~EgAN~p~t-~~a-~~~l~~~Gi~  333 (415)
T 2tmg_A          277 TNEELLELDVDILVPAAL-----EGAIHAGNAERIK-AKAVVEGANGPTT-PEA-DEILSRRGIL  333 (415)
T ss_dssp             CHHHHTTCSCSEEEECSS-----TTSBCHHHHTTCC-CSEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             CchhhhcCCCcEEEecCC-----cCccCcccHHHcC-CeEEEeCCCcccC-HHH-HHHHHHCCCE
Confidence            345555 47999998875     3567888888885 5588888888864 443 3456555543

>3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis}

Probab=96.25  E-value=0.018  Score=53.80  Aligned_cols=112  Identities=20%  Similarity=0.230  Sum_probs=63.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc-hhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ-ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      ..++|+|+|.|.||..+|..++ ..|. +|..+|+.+ +...+........-..... .........+ .+.+++||+|+
T Consensus         7 ~~~kv~ViGaG~vG~~ia~~l~-~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~-~~~~i~~t~d-~~a~~~aDvVI   83 (315)
T 3tl2_A            7 KRKKVSVIGAGFTGATTAFLLA-QKELADVVLVDIPQLENPTKGKALDMLEASPVQG-FDANIIGTSD-YADTADSDVVV   83 (315)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHT-CCCCEEEESC-GGGGTTCSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeccchHHHHHHhhhhHHHhhhhcc-CCCEEEEcCC-HHHhCCCCEEE
Confidence            4579999999999999999874 5677 999999984 3222221111000000000 0111111223 35679999999


Q ss_pred             EcCCCCccccc-----ccC------H---HHHhcCCCCcEEEEcCCCcccCHHH
Q 019387          242 LHPVLDKTTYH-----LIN------K---ERLATMKKEAILVNCSRGPVIDEVA  281 (342)
Q Consensus       242 l~~pl~~~t~~-----li~------~---~~l~~mk~ga~lINvaRG~~vd~~a  281 (342)
                      ++... +...+     ++.      +   +.+....|++++++++-  .+|.-.
T Consensus        84 iaag~-p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsN--Pvd~~t  134 (315)
T 3tl2_A           84 ITAGI-ARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTN--PVDAMT  134 (315)
T ss_dssp             ECCSC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHHHH
T ss_pred             EeCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCC--hHHHHH
Confidence            99743 22222     221      1   23334467899999983  444433

>2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1

Probab=96.23  E-value=0.01  Score=55.75  Aligned_cols=78  Identities=21%  Similarity=0.204  Sum_probs=46.3

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCc--------cccccCCHHHHhhcC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPV--------TWKRASSMDEVLREA  237 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~~ll~~a  237 (342)
                      +|||+|+|.||+.+++.|...-++++.+ .|+.++. ...+...++ + ...+..+.        ......+.++++.+.
T Consensus         4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~-~~~~~~~~g-~-~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~v   80 (334)
T 2czc_A            4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDF-EAYRAKELG-I-PVYAASEEFIPRFEKEGFEVAGTLNDLLEKV   80 (334)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSH-HHHHHHHTT-C-CEEESSGGGHHHHHHHTCCCSCBHHHHHTTC
T ss_pred             EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHH-HHHHHHhcC-c-cccccccccceeccCCceEEcCcHHHhccCC
Confidence            7999999999999999874323678765 5665332 222111110 0 00000000        011235788998899


Q ss_pred             CEEEEcCCCC
Q 019387          238 DVISLHPVLD  247 (342)
Q Consensus       238 DiV~l~~pl~  247 (342)
                      |+|+.|+|..
T Consensus        81 DvV~~aTp~~   90 (334)
T 2czc_A           81 DIIVDATPGG   90 (334)
T ss_dssp             SEEEECCSTT
T ss_pred             CEEEECCCcc
Confidence            9999999854

>4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea}

Probab=96.23  E-value=0.018  Score=56.40  Aligned_cols=104  Identities=15%  Similarity=0.217  Sum_probs=70.8

Q ss_pred             ccccCCCeEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC
Q 019387          160 GNLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       160 ~~~L~gktvgIvG~G----------~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      +..+.|++|+|+|+.          .-...+++.| ...|++|.+|||.......   ..|         .  ......+
T Consensus       317 ~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L-~~~g~~v~~~DP~~~~~~~---~~~---------~--~~~~~~~  381 (446)
T 4a7p_A          317 GGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAAL-QDAGATVKAYDPEGVEQAS---KML---------T--DVEFVEN  381 (446)
T ss_dssp             TSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHH-HHTSCEEEEECSSCHHHHG---GGC---------S--SCCBCSC
T ss_pred             cccCCCCEEEEEEEEeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCCHhHH---Hhc---------C--CceEecC
Confidence            346899999999997          6678999997 6899999999998743211   111         0  1223468


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccccCHHHH-hcCCCCcEEEEcCCCcccCHHHHH
Q 019387          230 MDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVALV  283 (342)
Q Consensus       230 l~~ll~~aDiV~l~~pl~~~t~~li~~~~l-~~mk~ga~lINvaRG~~vd~~aL~  283 (342)
                      +++.++++|.|+++++= ++-+. ++-+.+ +.|+ +.+++|+ |+ +.|.+.+.
T Consensus       382 ~~~~~~~ad~vvi~t~~-~~f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~~  431 (446)
T 4a7p_A          382 PYAAADGADALVIVTEW-DAFRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAELE  431 (446)
T ss_dssp             HHHHHTTBSEEEECSCC-TTTTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHHH
T ss_pred             hhHHhcCCCEEEEeeCC-HHhhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHHH
Confidence            89999999999999863 22222 454444 4566 4678885 64 46666543

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=96.22  E-value=0.0069  Score=56.88  Aligned_cols=93  Identities=18%  Similarity=0.215  Sum_probs=61.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .|++|.|+|.|.||...++. ++.+|++|++.++++++....  ..+       +.... +   .+.+++.+..|+|+-+
T Consensus       176 ~g~~VlV~GaG~vG~~a~ql-a~~~Ga~Vi~~~~~~~~~~~~--~~l-------Ga~~v-~---~~~~~~~~~~D~vid~  241 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKY-AVAMGAEVSVFARNEHKKQDA--LSM-------GVKHF-Y---TDPKQCKEELDFIIST  241 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHH-HHHTTCEEEEECSSSTTHHHH--HHT-------TCSEE-E---SSGGGCCSCEEEEEEC
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHCCCeEEEEeCCHHHHHHH--Hhc-------CCCee-c---CCHHHHhcCCCEEEEC
Confidence            48899999999999999998 589999999999877543211  111       11111 1   1222222378999988


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      .....     .-...++.++++..++.++-..
T Consensus       242 ~g~~~-----~~~~~~~~l~~~G~iv~~G~~~  268 (348)
T 3two_A          242 IPTHY-----DLKDYLKLLTYNGDLALVGLPP  268 (348)
T ss_dssp             CCSCC-----CHHHHHTTEEEEEEEEECCCCC
T ss_pred             CCcHH-----HHHHHHHHHhcCCEEEEECCCC
Confidence            76431     2345677888888888886433

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=96.21  E-value=0.004  Score=58.99  Aligned_cols=99  Identities=12%  Similarity=0.169  Sum_probs=62.7

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc---hhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ---ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      .+.|++|.|+|.|.||..+++.+ +.+|++|++.+++.   +.. + +...++..... .. .    ....+.+.-...|
T Consensus       178 ~~~g~~VlV~GaG~vG~~~~q~a-~~~Ga~Vi~~~~~~~~~~~~-~-~~~~~ga~~v~-~~-~----~~~~~~~~~~~~d  248 (366)
T 2cdc_A          178 TLNCRKVLVVGTGPIGVLFTLLF-RTYGLEVWMANRREPTEVEQ-T-VIEETKTNYYN-SS-N----GYDKLKDSVGKFD  248 (366)
T ss_dssp             SSTTCEEEEESCHHHHHHHHHHH-HHHTCEEEEEESSCCCHHHH-H-HHHHHTCEEEE-CT-T----CSHHHHHHHCCEE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeCCccchHHH-H-HHHHhCCceec-hH-H----HHHHHHHhCCCCC
Confidence            46799999999999999999985 88999999999876   432 1 11112110000 00 0    0011111113589


Q ss_pred             EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      +|+.+....+..   + ...+..|+++..+|+++-
T Consensus       249 ~vid~~g~~~~~---~-~~~~~~l~~~G~iv~~g~  279 (366)
T 2cdc_A          249 VIIDATGADVNI---L-GNVIPLLGRNGVLGLFGF  279 (366)
T ss_dssp             EEEECCCCCTHH---H-HHHGGGEEEEEEEEECSC
T ss_pred             EEEECCCChHHH---H-HHHHHHHhcCCEEEEEec
Confidence            999998742211   1 556788899999999874

>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber}

Probab=96.20  E-value=0.018  Score=53.83  Aligned_cols=108  Identities=15%  Similarity=0.210  Sum_probs=60.2

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      +|+|+|.|.||+.+|..|+ ..|.  +|..+|..+... +.............. ....... .+..+.+++||+|+++.
T Consensus         2 kv~ViGaG~vG~~~a~~l~-~~~~~~el~l~D~~~~k~-~g~a~DL~~~~~~~~-~~~~v~~-~~~~~a~~~aDvVii~a   77 (314)
T 3nep_X            2 KVTVIGAGNVGATVAECVA-RQDVAKEVVMVDIKDGMP-QGKALDMRESSPIHG-FDTRVTG-TNDYGPTEDSDVCIITA   77 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HHTCSSEEEEECSSTTHH-HHHHHHHHHHHHHHT-CCCEEEE-ESSSGGGTTCSEEEECC
T ss_pred             EEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCchHHH-HHHHHHHhccccccC-CCcEEEE-CCCHHHhCCCCEEEECC
Confidence            7999999999999998874 3344  999999987532 211000000000000 0011111 13456789999999997


Q ss_pred             CCCcccccc-----c--C-------HHHHhcCCCCcEEEEcCCCcccCHHH
Q 019387          245 VLDKTTYHL-----I--N-------KERLATMKKEAILVNCSRGPVIDEVA  281 (342)
Q Consensus       245 pl~~~t~~l-----i--~-------~~~l~~mk~ga~lINvaRG~~vd~~a  281 (342)
                      +.. ...++     +  |       .+.+....|++++++++-  .+|.-.
T Consensus        78 g~~-~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtN--Pvd~~t  125 (314)
T 3nep_X           78 GLP-RSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVAN--PLDVMT  125 (314)
T ss_dssp             CC--------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS--SHHHHH
T ss_pred             CCC-CCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCC--chhHHH
Confidence            643 22221     1  1       124455568899999984  444433

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=96.19  E-value=0.013  Score=56.16  Aligned_cols=96  Identities=16%  Similarity=0.195  Sum_probs=60.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh----h--c
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----R--E  236 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll----~--~  236 (342)
                      .|++|.|+|.|.+|...++. ++.+|+ +|++.+.+++...  +...+       +....-.....++.+.+    .  .
T Consensus       213 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~~--~~~~l-------Ga~~vi~~~~~~~~~~i~~~t~g~g  282 (404)
T 3ip1_A          213 PGDNVVILGGGPIGLAAVAI-LKHAGASKVILSEPSEVRRN--LAKEL-------GADHVIDPTKENFVEAVLDYTNGLG  282 (404)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEECSCHHHHH--HHHHH-------TCSEEECTTTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHHH--HHHHc-------CCCEEEcCCCCCHHHHHHHHhCCCC
Confidence            58899999999999999998 589999 9999998765431  11112       11111000112333322    1  4


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcC----CCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATM----KKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~m----k~ga~lINvaR  273 (342)
                      .|+|+-|+.....+.    ...++.+    ++|..++.++-
T Consensus       283 ~D~vid~~g~~~~~~----~~~~~~l~~~~~~~G~iv~~G~  319 (404)
T 3ip1_A          283 AKLFLEATGVPQLVW----PQIEEVIWRARGINATVAIVAR  319 (404)
T ss_dssp             CSEEEECSSCHHHHH----HHHHHHHHHCSCCCCEEEECSC
T ss_pred             CCEEEECCCCcHHHH----HHHHHHHHhccCCCcEEEEeCC
Confidence            999999987421121    2233444    99999999874

>4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E

Probab=96.18  E-value=0.031  Score=54.50  Aligned_cols=119  Identities=14%  Similarity=0.143  Sum_probs=70.7

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEc--------CCch--hHHHHHHhhh-------hhhhhccCCCCcc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD--------LYQA--TRLEKFVTAY-------GQFLKANGEQPVT  223 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d--------~~~~--~~~~~~~~~~-------~~~~~~~~~~~~~  223 (342)
                      .++.|+||.|=|+|++|+.+|+.| ...|++|++.+        +..-  ..+....+.-       ..+....+..   
T Consensus       231 ~~l~Gk~vaVQG~GnVG~~aa~~L-~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~---  306 (450)
T 4fcc_A          231 MGFEGMRVSVSGSGNVAQYAIEKA-MEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLV---  306 (450)
T ss_dssp             CCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCE---
T ss_pred             CCcCCCEEEEeCCChHHHHHHHHH-HhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcE---
Confidence            468999999999999999999997 68999998654        2211  0111111000       0000000000   


Q ss_pred             ccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCC--cEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKE--AILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       224 ~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~g--a~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +....++  +-..||+++=|.     +.+.|+.+....++.+  .++++-+-+.+-.+ + .+.|.+..|.
T Consensus       307 ~~~~~~i--~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t~e-A-~~iL~~rGIl  368 (450)
T 4fcc_A          307 YLEGQQP--WSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTTIE-A-TELFQQAGVL  368 (450)
T ss_dssp             EEETCCG--GGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-H-HHHHHHTTCE
T ss_pred             EecCccc--ccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCCHH-H-HHHHHHCCCE
Confidence            0001111  123699998775     4578999888888754  58888888886443 3 3566665554

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=96.17  E-value=0.0057  Score=57.44  Aligned_cols=95  Identities=15%  Similarity=0.084  Sum_probs=61.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh------c
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR------E  236 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~------~  236 (342)
                      .|++|.|+|.|.||+.+++.+ +.+|+ +|++.+++++.. +. ...+       +....-.....++.+.+.      .
T Consensus       167 ~g~~VlV~GaG~vG~~~~q~a-~~~Ga~~Vi~~~~~~~~~-~~-~~~~-------Ga~~~~~~~~~~~~~~v~~~~~g~g  236 (348)
T 2d8a_A          167 SGKSVLITGAGPLGLLGIAVA-KASGAYPVIVSEPSDFRR-EL-AKKV-------GADYVINPFEEDVVKEVMDITDGNG  236 (348)
T ss_dssp             TTCCEEEECCSHHHHHHHHHH-HHTTCCSEEEECSCHHHH-HH-HHHH-------TCSEEECTTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCCEEEEECCCHHHH-HH-HHHh-------CCCEEECCCCcCHHHHHHHHcCCCC
Confidence            689999999999999999984 89999 999999876542 11 1111       111000001123333322      5


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+|+.+.... ++    -...++.++++..+|.++-
T Consensus       237 ~D~vid~~g~~-~~----~~~~~~~l~~~G~iv~~g~  268 (348)
T 2d8a_A          237 VDVFLEFSGAP-KA----LEQGLQAVTPAGRVSLLGL  268 (348)
T ss_dssp             EEEEEECSCCH-HH----HHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCCH-HH----HHHHHHHHhcCCEEEEEcc
Confidence            89999988631 11    2456778888889998874

>4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A

Probab=96.17  E-value=0.01  Score=60.08  Aligned_cols=139  Identities=15%  Similarity=0.206  Sum_probs=81.4

Q ss_pred             eEecCCCC-CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCC
Q 019387          111 AVGNTPGV-LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFK  189 (342)
Q Consensus       111 ~V~n~~~~-~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg  189 (342)
                      +.++-... .....||.+.-+-|.+.|-          ..|..+     ....|.+++|.|||.|.+|..+|+.|+ ..|
T Consensus       286 ~~~~l~~~~dp~~la~~~~~Lnlklm~w----------Rllp~~-----g~ekL~~arVLIVGaGGLGs~vA~~La-~aG  349 (615)
T 4gsl_A          286 RVVDLSSLLDPLKIADQSVDLNLKLMKW----------RILPDL-----NLDIIKNTKVLLLGAGTLGCYVSRALI-AWG  349 (615)
T ss_dssp             EEEECHHHHCHHHHHHHHHHHHHHHHHH----------HTCTTC-----CHHHHHTCEEEEECCSHHHHHHHHHHH-HTT
T ss_pred             eEEeccccCCHHHHHhhhhhhhhHHHHH----------hhcchh-----hHHHHhCCeEEEECCCHHHHHHHHHHH-HcC
Confidence            44444333 4556777777666655531          122211     113689999999999999999999985 667


Q ss_pred             c-EEEEEcCCch------------------hHHHHHHhhhhhhhhccCCCCcc-cc------------------ccCCHH
Q 019387          190 M-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQPVT-WK------------------RASSMD  231 (342)
Q Consensus       190 ~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~-~~------------------~~~~l~  231 (342)
                      + ++..+|...-                  .+.+...+......   ...... +.                  ....++
T Consensus       350 VG~ItLvD~D~Ve~SNL~RQ~L~~~~dIG~~KAeaaa~~L~~iN---P~V~v~~~~~~Ipm~gh~v~~e~~~~l~~~~l~  426 (615)
T 4gsl_A          350 VRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIF---PLMDATGVKLSIPMIGHKLVNEEAQHKDFDRLR  426 (615)
T ss_dssp             CCEEEEECCCBCCTTGGGTSTTCCGGGTTSBHHHHHHHHHHHHC---TTCEEEEECCCCCCTTCCCSCHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCcccCcccccCCChhhcChHHHHHHHHHHHhhC---CCcEEEEeeccccccCccccchhhhcCCHHHHH
Confidence            7 7888887431                  11111111111100   000000 00                  012456


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       232 ~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      ++++++|+|+.|+. +.+++.+++......   |.-+|+.+
T Consensus       427 ~ll~~~DlVvd~tD-n~~tR~~ln~~c~~~---~~PlI~aa  463 (615)
T 4gsl_A          427 ALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  463 (615)
T ss_dssp             HHHHHCSEEEECCS-SGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred             HHhhcCCEEEecCC-CHHHHHHHHHHHHHc---CCeEEEEE
Confidence            78999999999985 678899988866553   44566654

>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A*

Probab=96.17  E-value=0.014  Score=54.15  Aligned_cols=107  Identities=16%  Similarity=0.262  Sum_probs=59.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      ++|+|+|.|.+|..+|..|+ ..|. +|..+|...+. .+.............. .........+. +.+++||+|+++.
T Consensus         3 ~kI~VIGaG~vG~~~a~~la-~~g~~~v~L~Di~~~~-~~g~~~dl~~~~~~~~-~~~~i~~t~d~-~a~~~aD~Vi~a~   78 (309)
T 1ur5_A            3 KKISIIGAGFVGSTTAHWLA-AKELGDIVLLDIVEGV-PQGKALDLYEASPIEG-FDVRVTGTNNY-ADTANSDVIVVTS   78 (309)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCSEEEEECSSSSH-HHHHHHHHHTTHHHHT-CCCCEEEESCG-GGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCCeEEEEeCCccH-HHHHHHhHHHhHhhcC-CCeEEEECCCH-HHHCCCCEEEEcC
Confidence            58999999999999999874 5564 89999987643 2221111110000000 11112222456 5689999999998


Q ss_pred             CCCcccccc-------cC----H---HHHhcCCCCcEEEEcCCCcccCH
Q 019387          245 VLDKTTYHL-------IN----K---ERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       245 pl~~~t~~l-------i~----~---~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      +. +...+.       .|    +   +.+....|++++++++  ..+|.
T Consensus        79 g~-p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~t--NPv~~  124 (309)
T 1ur5_A           79 GA-PRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN--NPLDA  124 (309)
T ss_dssp             CC---------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECC--SSHHH
T ss_pred             CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcC--CchHH
Confidence            54 332221       01    1   2233335788999974  34444

>3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O*

Probab=96.15  E-value=0.0082  Score=56.56  Aligned_cols=31  Identities=26%  Similarity=0.424  Sum_probs=24.8

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~  197 (342)
                      +|||+|+|.||+.+.|.|...-.++|.+.+.
T Consensus         3 kVgI~G~G~iGr~l~R~l~~~~~veivain~   33 (334)
T 3cmc_O            3 KVGINGFGRIGRNVFRAALKNPDIEVVAVND   33 (334)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred             EEEEECCCHHHHHHHHHHhCCCCeEEEEEeC
Confidence            7999999999999999874333678876544

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=96.15  E-value=0.024  Score=53.70  Aligned_cols=95  Identities=18%  Similarity=0.147  Sum_probs=62.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccc-cCCHHHHhh-----
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~~ll~-----  235 (342)
                      .|++|.|+|.|.||...++. ++.+|+ +|++.+++++.....  ..+       +.... .... ..++.+.+.     
T Consensus       192 ~g~~VlV~GaG~vG~~a~ql-a~~~Ga~~Vi~~~~~~~~~~~~--~~l-------Ga~~vi~~~~~~~~~~~~~~~~~~~  261 (374)
T 1cdo_A          192 PGSTCAVFGLGAVGLAAVMG-CHSAGAKRIIAVDLNPDKFEKA--KVF-------GATDFVNPNDHSEPISQVLSKMTNG  261 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEECSCGGGHHHH--HHT-------TCCEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEEcCCHHHHHHH--HHh-------CCceEEeccccchhHHHHHHHHhCC
Confidence            48899999999999999998 589999 899999876543111  111       11111 1111 123444433     


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCC-cEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~g-a~lINvaR  273 (342)
                      ..|+|+.++... ++    -...++.++++ ..+|.++-
T Consensus       262 g~D~vid~~g~~-~~----~~~~~~~l~~~~G~iv~~G~  295 (374)
T 1cdo_A          262 GVDFSLECVGNV-GV----MRNALESCLKGWGVSVLVGW  295 (374)
T ss_dssp             CBSEEEECSCCH-HH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCCH-HH----HHHHHHHhhcCCcEEEEEcC
Confidence            489999988631 21    24668889999 89998874

>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*

Probab=96.15  E-value=0.0095  Score=57.98  Aligned_cols=72  Identities=13%  Similarity=0.163  Sum_probs=47.9

Q ss_pred             CeEEEEecCHHHH-HHHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEE
Q 019387          166 QTVGVIGAGRIGS-AYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       166 ktvgIvG~G~IG~-~vA~~l~~af-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV  240 (342)
                      .+|||||+|.||+ ..++.+ ... ++++. ++|+.++. .+.+.+.+       +........+.++++++.  +.|+|
T Consensus        84 irigiIG~G~~g~~~~~~~l-~~~~~~~lvav~d~~~~~-~~~~a~~~-------g~~~~~~~~~~~~~~ll~~~~vD~V  154 (433)
T 1h6d_A           84 FGYAIVGLGKYALNQILPGF-AGCQHSRIEALVSGNAEK-AKIVAAEY-------GVDPRKIYDYSNFDKIAKDPKIDAV  154 (433)
T ss_dssp             EEEEEECCSHHHHHTHHHHT-TTCSSEEEEEEECSCHHH-HHHHHHHT-------TCCGGGEECSSSGGGGGGCTTCCEE
T ss_pred             eEEEEECCcHHHHHHHHHHH-hhCCCcEEEEEEcCCHHH-HHHHHHHh-------CCCcccccccCCHHHHhcCCCCCEE
Confidence            4799999999997 888886 444 67765 68887653 22222222       111101123568899987  79999


Q ss_pred             EEcCCC
Q 019387          241 SLHPVL  246 (342)
Q Consensus       241 ~l~~pl  246 (342)
                      ++|+|.
T Consensus       155 ~iatp~  160 (433)
T 1h6d_A          155 YIILPN  160 (433)
T ss_dssp             EECSCG
T ss_pred             EEcCCc
Confidence            999984

>3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12}

Probab=96.15  E-value=0.0048  Score=57.99  Aligned_cols=70  Identities=16%  Similarity=0.223  Sum_probs=46.8

Q ss_pred             CeEEEEecCHHHHH-HHH-HHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEE
Q 019387          166 QTVGVIGAGRIGSA-YAR-MMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (342)
Q Consensus       166 ktvgIvG~G~IG~~-vA~-~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV  240 (342)
                      .+|||||+|.||+. .++ .+.+.-++++. ++|+.++.. +. ...+           .+...+.++++++..  .|+|
T Consensus         3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~-~~-~~~~-----------~~~~~~~~~~~ll~~~~~D~V   69 (345)
T 3f4l_A            3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPE-EQ-APIY-----------SHIHFTSDLDEVLNDPDVKLV   69 (345)
T ss_dssp             EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGG-GG-SGGG-----------TTCEEESCTHHHHTCTTEEEE
T ss_pred             eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHH-HH-HHhc-----------CCCceECCHHHHhcCCCCCEE
Confidence            37999999999996 455 43233478887 688876532 11 1110           122345799999986  8999


Q ss_pred             EEcCCCCc
Q 019387          241 SLHPVLDK  248 (342)
Q Consensus       241 ~l~~pl~~  248 (342)
                      ++|+|...
T Consensus        70 ~i~tp~~~   77 (345)
T 3f4l_A           70 VVCTHADS   77 (345)
T ss_dssp             EECSCGGG
T ss_pred             EEcCChHH
Confidence            99998543

>3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A

Probab=96.14  E-value=0.0092  Score=60.28  Aligned_cols=104  Identities=16%  Similarity=0.243  Sum_probs=64.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc------------------hhHHHHHHhhhhhhhhccCCCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ------------------ATRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~------------------~~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|...                  ..+.+...+.....   .....
T Consensus       323 ~kL~~~kVLIVGaGGLGs~va~~La-~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~i---NP~v~  398 (598)
T 3vh1_A          323 DIIKNTKVLLLGAGTLGCYVSRALI-AWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRI---FPLMD  398 (598)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-TTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHH---CTTCE
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhH---CCCcE
Confidence            5688999999999999999999985 6787 788887541                  01111111111110   00000


Q ss_pred             ccc-c------------------ccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          222 VTW-K------------------RASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       222 ~~~-~------------------~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      ... .                  ....++++++++|+|+.|+. +.+++.+++......   +..+|+.+
T Consensus       399 v~~~~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD-n~~tR~lin~~c~~~---~~plI~aa  464 (598)
T 3vh1_A          399 ATGVKLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA  464 (598)
T ss_dssp             EEEECCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS-BGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred             EEEEeccccccCcccccccccccCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHhc---CCCEEEEE
Confidence            000 0                  11245678999999999986 678888888766553   34566643

>1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A*

Probab=96.11  E-value=0.034  Score=50.79  Aligned_cols=80  Identities=13%  Similarity=0.139  Sum_probs=50.3

Q ss_pred             ccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc--cccccCCHHHHhhcCC
Q 019387          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~aD  238 (342)
                      .+.||++.|+| .|.||+.+++.| ...|++|++++++.+. .+...+.+..   ..+....  .+....+++++++++|
T Consensus       116 ~l~gk~vlVtGaaGGiG~aia~~L-~~~G~~V~i~~R~~~~-~~~l~~~~~~---~~~~~~~~~D~~~~~~~~~~~~~~D  190 (287)
T 1lu9_A          116 SVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDK-AQAAADSVNK---RFKVNVTAAETADDASRAEAVKGAH  190 (287)
T ss_dssp             CCTTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHH-HHHHHHHHHH---HHTCCCEEEECCSHHHHHHHTTTCS
T ss_pred             CCCCCEEEEECCCcHHHHHHHHHH-HHCcCEEEEEECCHHH-HHHHHHHHHh---cCCcEEEEecCCCHHHHHHHHHhCC
Confidence            46789999999 999999999998 4779999999987643 2222111110   0010000  1111124566777788


Q ss_pred             EEEEcCCC
Q 019387          239 VISLHPVL  246 (342)
Q Consensus       239 iV~l~~pl  246 (342)
                      +|+.+.+.
T Consensus       191 vlVn~ag~  198 (287)
T 1lu9_A          191 FVFTAGAI  198 (287)
T ss_dssp             EEEECCCT
T ss_pred             EEEECCCc
Confidence            88888764

>4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis}

Probab=96.08  E-value=0.0096  Score=54.47  Aligned_cols=97  Identities=21%  Similarity=0.293  Sum_probs=57.8

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|+|+| +|+||+.+++.+.+.=++++.+ +|+..+.....   ..+.+.   +... ++....++++++.++|+|+.+
T Consensus         8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~---d~gel~---g~~~-gv~v~~dl~~ll~~~DVVIDf   80 (272)
T 4f3y_A            8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQ---DAGAFL---GKQT-GVALTDDIERVCAEADYLIDF   80 (272)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTS---BTTTTT---TCCC-SCBCBCCHHHHHHHCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccc---cHHHHh---CCCC-CceecCCHHHHhcCCCEEEEc
Confidence            4899999 9999999999875556888876 68764321000   000000   1111 334457999999999999988


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      .+  |+...   +-.-..++.|.-+|-...|
T Consensus        81 T~--p~a~~---~~~~~al~~G~~vVigTTG  106 (272)
T 4f3y_A           81 TL--PEGTL---VHLDAALRHDVKLVIGTTG  106 (272)
T ss_dssp             SC--HHHHH---HHHHHHHHHTCEEEECCCC
T ss_pred             CC--HHHHH---HHHHHHHHcCCCEEEECCC
Confidence            75  33211   1111223455556655555

>1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A

Probab=96.06  E-value=0.022  Score=54.20  Aligned_cols=97  Identities=11%  Similarity=0.209  Sum_probs=54.7

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      ..+|||+| +|.||+.+++.|.+.=.+++.+.....+.. .++...++.+ ...-.....+   .+ ++.+.++|+|+.|
T Consensus        16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g-~~~~~~~~~~-~~~v~~dl~~---~~-~~~~~~vDvVf~a   89 (359)
T 1xyg_A           16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAG-QSMESVFPHL-RAQKLPTLVS---VK-DADFSTVDAVFCC   89 (359)
T ss_dssp             CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTT-SCHHHHCGGG-TTSCCCCCBC---GG-GCCGGGCSEEEEC
T ss_pred             CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcC-CCHHHhCchh-cCccccccee---cc-hhHhcCCCEEEEc
Confidence            35899999 999999999997433346877765432211 1111111111 0000001111   12 4456789999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      +|...      ..+.....+.|+.+|+.+-
T Consensus        90 tp~~~------s~~~a~~~~aG~~VId~sa  113 (359)
T 1xyg_A           90 LPHGT------TQEIIKELPTALKIVDLSA  113 (359)
T ss_dssp             CCTTT------HHHHHHTSCTTCEEEECSS
T ss_pred             CCchh------HHHHHHHHhCCCEEEECCc
Confidence            98432      2333333377999999874

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=96.05  E-value=0.026  Score=53.47  Aligned_cols=95  Identities=17%  Similarity=0.132  Sum_probs=62.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccc-cCCHHHHhh-----
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~~ll~-----  235 (342)
                      .|++|.|+|.|.||..+++. ++.+|+ +|++.+++++.....  ..+       +.... .... ..++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~a~ql-a~~~Ga~~Vi~~~~~~~~~~~~--~~l-------Ga~~vi~~~~~~~~~~~~~~~~~~~  260 (374)
T 2jhf_A          191 QGSTCAVFGLGGVGLSVIMG-CKAAGAARIIGVDINKDKFAKA--KEV-------GATECVNPQDYKKPIQEVLTEMSNG  260 (374)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEECSCGGGHHHH--HHT-------TCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHHHHH--HHh-------CCceEecccccchhHHHHHHHHhCC
Confidence            48899999999999999998 589999 899999876543111  111       11110 1111 123444333     


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCC-cEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~g-a~lINvaR  273 (342)
                      ..|+|+.++.. +++    -...++.++++ ..+|.++-
T Consensus       261 g~D~vid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  294 (374)
T 2jhf_A          261 GVDFSFEVIGR-LDT----MVTALSCCQEAYGVSVIVGV  294 (374)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHHBCTTTCEEEECSC
T ss_pred             CCcEEEECCCC-HHH----HHHHHHHhhcCCcEEEEecc
Confidence            47999998863 221    24567889998 89998873

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=96.04  E-value=0.0084  Score=51.31  Aligned_cols=95  Identities=16%  Similarity=0.184  Sum_probs=59.8

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCH-HHHh-----h
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSM-DEVL-----R  235 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~ll-----~  235 (342)
                      .|++|.|.| .|.||+.+++.+ +..|++|++.+++++.. +.. ...       +.... .... .+. +++.     .
T Consensus        38 ~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~-~~~-~~~-------g~~~~~d~~~-~~~~~~~~~~~~~~  106 (198)
T 1pqw_A           38 PGERVLIHSATGGVGMAAVSIA-KMIGARIYTTAGSDAKR-EML-SRL-------GVEYVGDSRS-VDFADEILELTDGY  106 (198)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHHTCEEEEEESSHHHH-HHH-HTT-------CCSEEEETTC-STHHHHHHHHTTTC
T ss_pred             CCCEEEEeeCCChHHHHHHHHH-HHcCCEEEEEeCCHHHH-HHH-HHc-------CCCEEeeCCc-HHHHHHHHHHhCCC
Confidence            488999999 699999999986 78899999999876432 111 111       11100 1111 122 2222     1


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      ..|+++.+..  .+    .-...+..|++|..+|+++...
T Consensus       107 ~~D~vi~~~g--~~----~~~~~~~~l~~~G~~v~~g~~~  140 (198)
T 1pqw_A          107 GVDVVLNSLA--GE----AIQRGVQILAPGGRFIELGKKD  140 (198)
T ss_dssp             CEEEEEECCC--TH----HHHHHHHTEEEEEEEEECSCGG
T ss_pred             CCeEEEECCc--hH----HHHHHHHHhccCCEEEEEcCCC
Confidence            3788887764  12    2356778889999999987543

>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}

Probab=96.03  E-value=0.011  Score=55.46  Aligned_cols=61  Identities=13%  Similarity=0.184  Sum_probs=45.2

Q ss_pred             CeEEEEecCHHHH-HHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc---CCEE
Q 019387          166 QTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE---ADVI  240 (342)
Q Consensus       166 ktvgIvG~G~IG~-~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~---aDiV  240 (342)
                      .+|||||+|.||+ ..++.+.+.-+++|. ++|+..+.                    .+...+.++++++..   .|+|
T Consensus        26 ~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~~--------------------~g~~~~~~~~~ll~~~~~vD~V   85 (330)
T 4ew6_A           26 INLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGTV--------------------EGVNSYTTIEAMLDAEPSIDAV   85 (330)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCCC--------------------TTSEEESSHHHHHHHCTTCCEE
T ss_pred             ceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChhh--------------------cCCCccCCHHHHHhCCCCCCEE
Confidence            5899999999998 688876433378876 47776432                    112245799999976   8999


Q ss_pred             EEcCCC
Q 019387          241 SLHPVL  246 (342)
Q Consensus       241 ~l~~pl  246 (342)
                      ++|+|.
T Consensus        86 ~i~tp~   91 (330)
T 4ew6_A           86 SLCMPP   91 (330)
T ss_dssp             EECSCH
T ss_pred             EEeCCc
Confidence            999994

>2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A*

Probab=96.03  E-value=0.0054  Score=54.02  Aligned_cols=67  Identities=15%  Similarity=0.191  Sum_probs=45.6

Q ss_pred             CeEEEEecCHHHHHHHHHH-HhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-cCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMM-VEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l-~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~aDiV~l  242 (342)
                      ++++|+|.|++|+.+++.+ ... |+++. ++|..+.....             ......+...++++++++ +.|+|++
T Consensus        81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~-------------~i~gv~V~~~~dl~ell~~~ID~ViI  146 (211)
T 2dt5_A           81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGR-------------PVRGGVIEHVDLLPQRVPGRIEIALL  146 (211)
T ss_dssp             EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTC-------------EETTEEEEEGGGHHHHSTTTCCEEEE
T ss_pred             CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhh-------------hhcCCeeecHHhHHHHHHcCCCEEEE
Confidence            5799999999999999852 134 88877 47876643200             001112223568899886 5899999


Q ss_pred             cCCC
Q 019387          243 HPVL  246 (342)
Q Consensus       243 ~~pl  246 (342)
                      |+|.
T Consensus       147 A~Ps  150 (211)
T 2dt5_A          147 TVPR  150 (211)
T ss_dssp             CSCH
T ss_pred             eCCc
Confidence            9994

>3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A*

Probab=96.03  E-value=0.023  Score=53.93  Aligned_cols=31  Identities=29%  Similarity=0.480  Sum_probs=24.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d  196 (342)
                      .+|||+|+|.||+.+.|.|...=+++|.+.+
T Consensus        18 ikVgI~G~G~iGr~llR~l~~~p~veivain   48 (354)
T 3cps_A           18 GTLGINGFGRIGRLVLRACMERNDITVVAIN   48 (354)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTCSSCEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHcCCCeEEEEec
Confidence            3899999999999999987432368887654

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=96.02  E-value=0.011  Score=55.26  Aligned_cols=95  Identities=12%  Similarity=0.154  Sum_probs=61.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHh----hcCC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVL----READ  238 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll----~~aD  238 (342)
                      .|++|.|+|.|.||..+++.+ +.+|++|++.+++++.....  ..+       +.... ... ..++.+.+    ...|
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~--~~l-------Ga~~~~d~~-~~~~~~~~~~~~~~~d  232 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYA-KAMGLNVVAVDIGDEKLELA--KEL-------GADLVVNPL-KEDAAKFMKEKVGGVH  232 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHH-HHTTCEEEEECSCHHHHHHH--HHT-------TCSEEECTT-TSCHHHHHHHHHSSEE
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHH--HHC-------CCCEEecCC-CccHHHHHHHHhCCCC
Confidence            478999999999999999985 89999999999876543111  111       11100 011 12333222    4689


Q ss_pred             EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      +|+.+.... +    .-...++.++++..+|.++..
T Consensus       233 ~vid~~g~~-~----~~~~~~~~l~~~G~~v~~g~~  263 (339)
T 1rjw_A          233 AAVVTAVSK-P----AFQSAYNSIRRGGACVLVGLP  263 (339)
T ss_dssp             EEEESSCCH-H----HHHHHHHHEEEEEEEEECCCC
T ss_pred             EEEECCCCH-H----HHHHHHHHhhcCCEEEEeccc
Confidence            999887631 1    124567888899999988753

>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*

Probab=96.01  E-value=0.009  Score=58.66  Aligned_cols=43  Identities=16%  Similarity=0.229  Sum_probs=37.1

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHH
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~  204 (342)
                      ..+.|++|.|||.|.+|.+.++.| ...|++|.++|+.......
T Consensus         8 ~~l~~~~vlVvGgG~va~~k~~~L-~~~ga~V~vi~~~~~~~~~   50 (457)
T 1pjq_A            8 CQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQFT   50 (457)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHHH
T ss_pred             EECCCCEEEEECCCHHHHHHHHHH-HhCcCEEEEEcCCCCHHHH
Confidence            568899999999999999999998 5789999999987655433

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=96.01  E-value=0.015  Score=55.55  Aligned_cols=69  Identities=19%  Similarity=0.283  Sum_probs=48.9

Q ss_pred             CeEEEEecC-HHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEEE
Q 019387          166 QTVGVIGAG-RIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (342)
Q Consensus       166 ktvgIvG~G-~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV~  241 (342)
                      .+|||||+| .+|+..++.+.+.-++++. ++|+.++.. +.+.+.+       +     +..+.++++++.+  .|+|+
T Consensus         3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~-~~~a~~~-------g-----~~~~~~~~ell~~~~vD~V~   69 (387)
T 3moi_A            3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVR-ERFGKEY-------G-----IPVFATLAEMMQHVQMDAVY   69 (387)
T ss_dssp             EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHH-HHHHHHH-------T-----CCEESSHHHHHHHSCCSEEE
T ss_pred             eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHH-HHHHHHc-------C-----CCeECCHHHHHcCCCCCEEE
Confidence            479999999 9999999887433477877 578876532 2222222       1     2245799999985  89999


Q ss_pred             EcCCCC
Q 019387          242 LHPVLD  247 (342)
Q Consensus       242 l~~pl~  247 (342)
                      +++|..
T Consensus        70 i~tp~~   75 (387)
T 3moi_A           70 IASPHQ   75 (387)
T ss_dssp             ECSCGG
T ss_pred             EcCCcH
Confidence            999953

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=96.00  E-value=0.025  Score=53.52  Aligned_cols=95  Identities=16%  Similarity=0.060  Sum_probs=62.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccc-cCCHHHHhh-----
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~~ll~-----  235 (342)
                      .|++|.|+|.|.||...++. ++.+|+ +|++.++++++....  ..+       +.... .... ..++.+.+.     
T Consensus       191 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~~~a--~~l-------Ga~~vi~~~~~~~~~~~~i~~~t~g  260 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVG-CKAAGASRIIGVGTHKDKFPKA--IEL-------GATECLNPKDYDKPIYEVICEKTNG  260 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHHTCSEEEEECSCGGGHHHH--HHT-------TCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEECCCHHHHHHH--HHc-------CCcEEEecccccchHHHHHHHHhCC
Confidence            48899999999999999998 589999 899998876543111  111       21111 1111 023444332     


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCC-cEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~g-a~lINvaR  273 (342)
                      ..|+|+-+... +++    -...++.++++ ..+|.++-
T Consensus       261 g~Dvvid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  294 (373)
T 1p0f_A          261 GVDYAVECAGR-IET----MMNALQSTYCGSGVTVVLGL  294 (373)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CCCEEEECCCC-HHH----HHHHHHHHhcCCCEEEEEcc
Confidence            58999998863 221    24668889998 89998874

>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}

Probab=96.00  E-value=0.015  Score=54.95  Aligned_cols=70  Identities=19%  Similarity=0.298  Sum_probs=45.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcC--------CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGF--------KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~af--------g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~  236 (342)
                      -+|||||+|.||+.-++.+ +.+        +++|. ++|++++. .+++.+.|       +..    ..+.++++++++
T Consensus        26 irvgiIG~G~ig~~H~~a~-~~~~~~~~~~~~~~lvav~d~~~~~-a~~~a~~~-------g~~----~~y~d~~ell~~   92 (393)
T 4fb5_A           26 LGIGLIGTGYMGKCHALAW-NAVKTVFGDVERPRLVHLAEANAGL-AEARAGEF-------GFE----KATADWRALIAD   92 (393)
T ss_dssp             CEEEEECCSHHHHHHHHHH-TTHHHHHCSSCCCEEEEEECC--TT-HHHHHHHH-------TCS----EEESCHHHHHHC
T ss_pred             ccEEEEcCCHHHHHHHHHH-HhhhhhhccCCCcEEEEEECCCHHH-HHHHHHHh-------CCC----eecCCHHHHhcC
Confidence            4899999999999776654 332        56766 57887653 33333333       111    235799999964


Q ss_pred             --CCEEEEcCCCCc
Q 019387          237 --ADVISLHPVLDK  248 (342)
Q Consensus       237 --aDiV~l~~pl~~  248 (342)
                        -|+|++|+|..-
T Consensus        93 ~~iDaV~IatP~~~  106 (393)
T 4fb5_A           93 PEVDVVSVTTPNQF  106 (393)
T ss_dssp             TTCCEEEECSCGGG
T ss_pred             CCCcEEEECCChHH
Confidence              689999999533

>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis}

Probab=96.00  E-value=0.029  Score=52.46  Aligned_cols=109  Identities=16%  Similarity=0.236  Sum_probs=61.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .++|+|+|.|.||..+|..|+ .-|. +|..+|..++.. +.............+ .+.......+ .+.+++||+|+++
T Consensus         5 ~~kI~iiGaG~vG~~~a~~l~-~~~~~~v~l~Di~~~~~-~g~a~dL~~~~~~~~-~~~~v~~t~d-~~a~~~aDvVIi~   80 (321)
T 3p7m_A            5 RKKITLVGAGNIGGTLAHLAL-IKQLGDVVLFDIAQGMP-NGKALDLLQTCPIEG-VDFKVRGTND-YKDLENSDVVIVT   80 (321)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHH-HHHHHHHHTTHHHHT-CCCCEEEESC-GGGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCceEEEEeCChHHH-HHHHHHHHhhhhhcC-CCcEEEEcCC-HHHHCCCCEEEEc
Confidence            468999999999999998874 3344 999999987532 111110000000000 0111211233 3678999999999


Q ss_pred             CCCCcccccc-----c--CH-------HHHhcCCCCcEEEEcCCCcccCHH
Q 019387          244 PVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       244 ~pl~~~t~~l-----i--~~-------~~l~~mk~ga~lINvaRG~~vd~~  280 (342)
                      .+. +...++     +  |.       +.+....|++++++++  ..+|.-
T Consensus        81 ag~-p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd~~  128 (321)
T 3p7m_A           81 AGV-PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLDIM  128 (321)
T ss_dssp             CSC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHHHH
T ss_pred             CCc-CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchHHH
Confidence            753 322222     1  11       2233345789999995  455443

>3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A

Probab=96.00  E-value=0.065  Score=51.92  Aligned_cols=114  Identities=18%  Similarity=0.234  Sum_probs=71.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCc---------hhHHHHHHhhhhhhhhccCCCCccc-cccCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQ---------ATRLEKFVTAYGQFLKANGEQPVTW-KRASS  229 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  229 (342)
                      .++.|+||.|-|+|++|+.+|+.| ...|++|+ +.|.+.         ...+..+.+       ..+.. ..+ ....+
T Consensus       217 ~~l~g~~vaVqG~GnVG~~aa~~l-~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~-------~~g~i-~~~~a~~~~  287 (424)
T 3k92_A          217 IKLQNARIIIQGFGNAGSFLAKFM-HDAGAKVIGISDANGGLYNPDGLDIPYLLDKRD-------SFGMV-TNLFTDVIT  287 (424)
T ss_dssp             CCGGGCEEEEECCSHHHHHHHHHH-HHHTCEEEEEECSSCEEECTTCCCHHHHHHHCC-------SSSCC-GGGCSCCBC
T ss_pred             CCcccCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCcEECCCCCCHHHHHHHHH-------HhCCC-CCCCcEEec
Confidence            468999999999999999999997 57899986 455541         111111111       11100 000 11123


Q ss_pred             HHHHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 019387          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       230 l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i  291 (342)
                      -++++ ..||+++-|..     .+.|+.+....++ -.+++-.+-+++ ..+ -.+.|++..|
T Consensus       288 ~~~i~~~~~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~-t~e-A~~iL~~rGI  342 (424)
T 3k92_A          288 NEELLEKDCDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPT-TID-ATKILNERGV  342 (424)
T ss_dssp             HHHHHHSCCSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCB-CHH-HHHHHHHTTC
T ss_pred             CccceeccccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCC-CHH-HHHHHHHCCC
Confidence            35544 56999998764     4677777777774 568888889986 443 3566766555

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=96.00  E-value=0.015  Score=54.69  Aligned_cols=32  Identities=25%  Similarity=0.381  Sum_probs=25.8

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~  198 (342)
                      +|||+|+|.||+.+.|.|...-.++|.+.+-.
T Consensus         3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~~   34 (330)
T 1gad_O            3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDL   34 (330)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECS
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCeEEEEEcCC
Confidence            79999999999999998754456888876543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=95.99  E-value=0.0085  Score=56.92  Aligned_cols=96  Identities=19%  Similarity=0.285  Sum_probs=62.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .|.+|.|+|.|.||...++. ++.+|++|++.+++++.....  ..+       +.... .....+.++++....|+|+.
T Consensus       194 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~Vi~~~~~~~~~~~a--~~l-------Ga~~vi~~~~~~~~~~~~~g~Dvvid  263 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKL-AHAMGAHVVAFTTSEAKREAA--KAL-------GADEVVNSRNADEMAAHLKSFDFILN  263 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCEEEEEESSGGGHHHH--HHH-------TCSEEEETTCHHHHHTTTTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCEEEEEeCCHHHHHHH--HHc-------CCcEEeccccHHHHHHhhcCCCEEEE
Confidence            48899999999999999998 589999999999876543111  111       11110 00000012233356899998


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      ++....     .-...++.++++..+|.++-.
T Consensus       264 ~~g~~~-----~~~~~~~~l~~~G~iv~~G~~  290 (369)
T 1uuf_A          264 TVAAPH-----NLDDFTTLLKRDGTMTLVGAP  290 (369)
T ss_dssp             CCSSCC-----CHHHHHTTEEEEEEEEECCCC
T ss_pred             CCCCHH-----HHHHHHHHhccCCEEEEeccC
Confidence            886421     124567888999999988743

>1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2

Probab=95.97  E-value=0.0092  Score=58.89  Aligned_cols=129  Identities=14%  Similarity=0.248  Sum_probs=73.3

Q ss_pred             CCeEEEEecCHH-HHHHHHHHHh---cC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          165 GQTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       165 gktvgIvG~G~I-G~~vA~~l~~---af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      ..+|+|||.|.. |.++|..|++   ++ +-+|..||+.++. .+...+.-.......+ .+..+....++++.+++||+
T Consensus        28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~-~~~~~~~~~~~l~~~~-~~~~I~~t~D~~eal~~AD~  105 (472)
T 1u8x_X           28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKER-QDRIAGACDVFIREKA-PDIEFAATTDPEEAFTDVDF  105 (472)
T ss_dssp             CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHH-HHHHHHHHHHHHHHHC-TTSEEEEESCHHHHHSSCSE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHH-HHHHHHHHHHHhccCC-CCCEEEEECCHHHHHcCCCE
Confidence            358999999998 6667655543   45 6689999998753 2221111001111111 12333344688889999999


Q ss_pred             EEEcCCCCcc---cc--------ccc--------------------C--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHH
Q 019387          240 ISLHPVLDKT---TY--------HLI--------------------N--KERLATMKKEAILVNCSRGPVIDEVALVEHL  286 (342)
Q Consensus       240 V~l~~pl~~~---t~--------~li--------------------~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL  286 (342)
                      |++++|....   ++        +++                    -  .+.+....|+|++||++-.--+-..++.+..
T Consensus       106 VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~T~~~~k~~  185 (472)
T 1u8x_X          106 VMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPAAIVAEATRRLR  185 (472)
T ss_dssp             EEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCHHHHHHHHHHHS
T ss_pred             EEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHhC
Confidence            9999986321   11        111                    0  1234445689999999865534344444433


Q ss_pred             HcCCceEEE
Q 019387          287 KQNPMFRVG  295 (342)
Q Consensus       287 ~~g~i~~aa  295 (342)
                      -..++.|.+
T Consensus       186 p~~rViG~c  194 (472)
T 1u8x_X          186 PNSKILNIC  194 (472)
T ss_dssp             TTCCEEECC
T ss_pred             CCCCEEEeC
Confidence            233555543

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.97  E-value=0.033  Score=52.21  Aligned_cols=96  Identities=17%  Similarity=0.099  Sum_probs=62.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccc-cC---CHHHHh----
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-AS---SMDEVL----  234 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~---~l~~ll----  234 (342)
                      .|++|.|+|.|.+|..+++. ++.+|++|++.+++++... . ...+       +.... .... .+   .+.+..    
T Consensus       168 ~g~~VlV~GaG~vG~~a~ql-a~~~Ga~Vi~~~~~~~~~~-~-~~~l-------Ga~~~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          168 LGTTVLVIGAGPIGLVSVLA-AKAYGAFVVCTARSPRRLE-V-AKNC-------GADVTLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCEEEEEESCHHHHH-H-HHHT-------TCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCEEEEEcCCHHHHH-H-HHHh-------CCCEEEcCcccccHHHHHHHHhcccc
Confidence            47899999999999999998 5899999999988765421 1 1111       11100 0010 11   122333    


Q ss_pred             -hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       235 -~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                       ...|+|+.+.... .+    -...++.++++..+|.++-+
T Consensus       238 g~g~D~vid~~g~~-~~----~~~~~~~l~~~G~iv~~G~~  273 (352)
T 1e3j_A          238 GDLPNVTIDCSGNE-KC----ITIGINITRTGGTLMLVGMG  273 (352)
T ss_dssp             SSCCSEEEECSCCH-HH----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCCCEEEECCCCH-HH----HHHHHHHHhcCCEEEEEecC
Confidence             2589999988632 11    24567889999999998753

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=95.97  E-value=0.012  Score=55.55  Aligned_cols=94  Identities=14%  Similarity=0.011  Sum_probs=61.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH----Hhh--cC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLR--EA  237 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----ll~--~a  237 (342)
                      .|++|.|+|.|.||...++. ++.+|++|++.+++++....  ...+       +....-.....++.+    +..  ..
T Consensus       189 ~g~~VlV~G~G~vG~~a~ql-a~~~Ga~Vi~~~~~~~~~~~--~~~l-------Ga~~vi~~~~~~~~~~v~~~~~g~g~  258 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQI-AKATGAEVIVTSSSREKLDR--AFAL-------GADHGINRLEEDWVERVYALTGDRGA  258 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHH-HHHTTCEEEEEESCHHHHHH--HHHH-------TCSEEEETTTSCHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCEEEEEecCchhHHH--HHHc-------CCCEEEcCCcccHHHHHHHHhCCCCc
Confidence            58899999999999999998 48999999999987654311  1111       111110011123332    222  58


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+|+-|...  +    .-...++.+++|..++.++-
T Consensus       259 D~vid~~g~--~----~~~~~~~~l~~~G~iv~~G~  288 (363)
T 3uog_A          259 DHILEIAGG--A----GLGQSLKAVAPDGRISVIGV  288 (363)
T ss_dssp             EEEEEETTS--S----CHHHHHHHEEEEEEEEEECC
T ss_pred             eEEEECCCh--H----HHHHHHHHhhcCCEEEEEec
Confidence            999988762  1    23557788899999988863

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=95.96  E-value=0.017  Score=54.29  Aligned_cols=95  Identities=18%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccccc----CCH-HHHh---
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA----SSM-DEVL---  234 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l-~~ll---  234 (342)
                      .|++|.|+|.|.+|...++. ++.+|+ +|++.+++++.. +. ...+       +... .+...    .++ +++.   
T Consensus       171 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~-~~-a~~l-------Ga~~-vi~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          171 LGHKVLVCGAGPIGMVTLLV-AKAMGAAQVVVTDLSATRL-SK-AKEI-------GADL-VLQISKESPQEIARKVEGQL  239 (356)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEEESCHHHH-HH-HHHT-------TCSE-EEECSSCCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHH-HH-HHHh-------CCCE-EEcCcccccchHHHHHHHHh
Confidence            47899999999999999998 589999 999999876542 11 1111       1111 11110    111 1222   


Q ss_pred             -hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       235 -~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                       ...|+|+.+.... .+    -...++.+++|..++.++-+
T Consensus       240 ~~g~D~vid~~g~~-~~----~~~~~~~l~~~G~iv~~G~~  275 (356)
T 1pl8_A          240 GCKPEVTIECTGAE-AS----IQAGIYATRSGGTLVLVGLG  275 (356)
T ss_dssp             TSCCSEEEECSCCH-HH----HHHHHHHSCTTCEEEECSCC
T ss_pred             CCCCCEEEECCCCh-HH----HHHHHHHhcCCCEEEEEecC
Confidence             2589999988632 11    24567889999999998743

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.95  E-value=0.01  Score=55.48  Aligned_cols=94  Identities=14%  Similarity=0.176  Sum_probs=60.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh----cCCE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR----EADV  239 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~----~aDi  239 (342)
                      .|++|.|.|.|.||...++. ++.+|++|++.++++++..  +...+       +....-.....++.+.+.    ..|+
T Consensus       166 ~g~~VlV~GaG~vG~~a~ql-a~~~Ga~Vi~~~~~~~~~~--~~~~l-------Ga~~~i~~~~~~~~~~~~~~~g~~d~  235 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQY-ARAMGLRVAAVDIDDAKLN--LARRL-------GAEVAVNARDTDPAAWLQKEIGGAHG  235 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHH-HHHTTCEEEEEESCHHHHH--HHHHT-------TCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCeEEEEeCCHHHHH--HHHHc-------CCCEEEeCCCcCHHHHHHHhCCCCCE
Confidence            48899999999999999998 5899999999998765431  11111       211110001123333332    5799


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      |+.+.... +    .-...++.++++..++.++
T Consensus       236 vid~~g~~-~----~~~~~~~~l~~~G~iv~~G  263 (340)
T 3s2e_A          236 VLVTAVSP-K----AFSQAIGMVRRGGTIALNG  263 (340)
T ss_dssp             EEESSCCH-H----HHHHHHHHEEEEEEEEECS
T ss_pred             EEEeCCCH-H----HHHHHHHHhccCCEEEEeC
Confidence            98887532 1    1245667788888888876

>1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1

Probab=95.94  E-value=0.012  Score=54.18  Aligned_cols=105  Identities=16%  Similarity=0.104  Sum_probs=65.8

Q ss_pred             CCeEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEE
Q 019387          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       165 gktvgIvG~-G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV  240 (342)
                      .++|.|+|. |++|+.+++.+ +..|++++ .++|....                 ....+...+.+++++..  ..|++
T Consensus         7 ~~~VaVvGasG~~G~~~~~~l-~~~g~~~v~~VnP~~~g-----------------~~i~G~~vy~sl~el~~~~~~Dv~   68 (288)
T 1oi7_A            7 ETRVLVQGITGREGQFHTKQM-LTYGTKIVAGVTPGKGG-----------------MEVLGVPVYDTVKEAVAHHEVDAS   68 (288)
T ss_dssp             TCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTT-----------------CEETTEEEESSHHHHHHHSCCSEE
T ss_pred             CCEEEEECCCCCHHHHHHHHH-HHcCCeEEEEECCCCCC-----------------ceECCEEeeCCHHHHhhcCCCCEE
Confidence            468999999 99999999987 56788854 56664310                 00123345678999988  89999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCc-EEEEcCCCcc-cCHHHHHHHHHcCCce
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEA-ILVNCSRGPV-IDEVALVEHLKQNPMF  292 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga-~lINvaRG~~-vd~~aL~~aL~~g~i~  292 (342)
                      ++++|- +.+...+.+ ..+   .|. .+|..+-|=. -+++.|.++.++..+.
T Consensus        69 Ii~vp~-~~~~~~~~e-a~~---~Gi~~vVi~t~G~~~~~~~~l~~~a~~~gi~  117 (288)
T 1oi7_A           69 IIFVPA-PAAADAALE-AAH---AGIPLIVLITEGIPTLDMVRAVEEIKALGSR  117 (288)
T ss_dssp             EECCCH-HHHHHHHHH-HHH---TTCSEEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             EEecCH-HHHHHHHHH-HHH---CCCCEEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            999983 233333332 222   232 2455554422 2345788888765554

>1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1

Probab=95.94  E-value=0.028  Score=53.05  Aligned_cols=80  Identities=14%  Similarity=0.112  Sum_probs=44.6

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHh-hhhhhhhc-cC---CCCccccccCCHHHHhhcCCEE
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVT-AYGQFLKA-NG---EQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~-~~~~~~~~-~~---~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      +|||+|+|.||+.+++.|.+.=++++.+ .|+.+......... .+.. ... ..   -...++....++++++.++|+|
T Consensus         3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~-~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV   81 (340)
T 1b7g_O            3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRI-YVPQQSIKKFEESGIPVAGTVEDLIKTSDIV   81 (340)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCE-ECCGGGHHHHHTTTCCCCCCHHHHHHHCSEE
T ss_pred             EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcce-ecCcCHHHHhcccccccccCHhHhhcCCCEE
Confidence            7999999999999999874334678775 56553321111100 0000 000 00   0000011123566777889999


Q ss_pred             EEcCCCC
Q 019387          241 SLHPVLD  247 (342)
Q Consensus       241 ~l~~pl~  247 (342)
                      +.|+|..
T Consensus        82 ~~aTp~~   88 (340)
T 1b7g_O           82 VDTTPNG   88 (340)
T ss_dssp             EECCSTT
T ss_pred             EECCCCc
Confidence            9999853

>3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A*

Probab=95.94  E-value=0.034  Score=50.81  Aligned_cols=109  Identities=15%  Similarity=0.201  Sum_probs=64.8

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc----cccccCCHHHHhh
Q 019387          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV----TWKRASSMDEVLR  235 (342)
Q Consensus       161 ~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~ll~  235 (342)
                      ..+.||++.|.|- |.||+++|+.|+ .-|++|++.+++.....+...+.    ....+....    ......++++++.
T Consensus        43 ~~l~gk~vlVTGas~GIG~aia~~la-~~G~~V~~~~r~~~~~~~~~~~~----~~~~~~~~~~~~~Dv~d~~~v~~~~~  117 (291)
T 3ijr_A           43 EKLKGKNVLITGGDSGIGRAVSIAFA-KEGANIAIAYLDEEGDANETKQY----VEKEGVKCVLLPGDLSDEQHCKDIVQ  117 (291)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHH----HHTTTCCEEEEESCTTSHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchHHHHHHHHH----HHhcCCcEEEEECCCCCHHHHHHHHH
Confidence            4689999999996 789999999985 67999999988765432222111    111111100    1111123344443


Q ss_pred             -------cCCEEEEcCCCCcccc----------------c-----ccCHHHHhcCCCCcEEEEcCCC
Q 019387          236 -------EADVISLHPVLDKTTY----------------H-----LINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       236 -------~aDiV~l~~pl~~~t~----------------~-----li~~~~l~~mk~ga~lINvaRG  274 (342)
                             .-|+++.+.-......                +     .+.+..+..|+++..+||++..
T Consensus       118 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~isS~  184 (291)
T 3ijr_A          118 ETVRQLGSLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTASI  184 (291)
T ss_dssp             HHHHHHSSCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEECCT
T ss_pred             HHHHHcCCCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEech
Confidence                   5799988754321100                0     1224566788888899998754

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=95.94  E-value=0.011  Score=55.34  Aligned_cols=93  Identities=16%  Similarity=0.090  Sum_probs=61.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCCHHHHhh-----c
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLR-----E  236 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~-----~  236 (342)
                      .|++|.|+|.|.+|..+++. ++.+|+ +|++.+++++.. +.        ....  ....+. ...++.+.+.     .
T Consensus       164 ~g~~VlV~GaG~vG~~~~q~-a~~~Ga~~Vi~~~~~~~~~-~~--------~~~l--a~~v~~~~~~~~~~~~~~~~~~g  231 (343)
T 2dq4_A          164 SGKSVLITGAGPIGLMAAMV-VRASGAGPILVSDPNPYRL-AF--------ARPY--ADRLVNPLEEDLLEVVRRVTGSG  231 (343)
T ss_dssp             TTSCEEEECCSHHHHHHHHH-HHHTTCCSEEEECSCHHHH-GG--------GTTT--CSEEECTTTSCHHHHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHH-HH--------HHHh--HHhccCcCccCHHHHHHHhcCCC
Confidence            68999999999999999998 589999 999999876532 11        1110  011111 1124444333     5


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+|+.+.... ++    -...++.++++..+|.++-
T Consensus       232 ~D~vid~~g~~-~~----~~~~~~~l~~~G~iv~~g~  263 (343)
T 2dq4_A          232 VEVLLEFSGNE-AA----IHQGLMALIPGGEARILGI  263 (343)
T ss_dssp             EEEEEECSCCH-HH----HHHHHHHEEEEEEEEECCC
T ss_pred             CCEEEECCCCH-HH----HHHHHHHHhcCCEEEEEec
Confidence            79999888631 11    2456788899999998864

>3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus}

Probab=95.93  E-value=0.21  Score=45.94  Aligned_cols=69  Identities=16%  Similarity=0.089  Sum_probs=50.7

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       162 ~L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      .+.|.+|+++|=   +++.++.+..+ ..||++|.+..|..-.. +.        ..     ..++....++++.++++|
T Consensus       143 ~l~gl~va~vGDl~~~rva~Sl~~~~-~~~g~~v~~~~P~~~~p-~~--------~~-----~~g~~~~~d~~eav~~aD  207 (291)
T 3d6n_B          143 EVKDLRVLYVGDIKHSRVFRSGAPLL-NMFGAKIGVCGPKTLIP-RD--------VE-----VFKVDVFDDVDKGIDWAD  207 (291)
T ss_dssp             CCTTCEEEEESCCTTCHHHHHHHHHH-HHTTCEEEEESCGGGSC-TT--------GG-----GGCEEEESSHHHHHHHCS
T ss_pred             CcCCcEEEEECCCCCCchHHHHHHHH-HHCCCEEEEECCchhCC-ch--------HH-----HCCCEEEcCHHHHhCCCC
Confidence            378999999996   89999999987 57999999988743211 00        00     012334579999999999


Q ss_pred             EEEEcCCC
Q 019387          239 VISLHPVL  246 (342)
Q Consensus       239 iV~l~~pl  246 (342)
                      +|.. +..
T Consensus       208 vvy~-~~~  214 (291)
T 3d6n_B          208 VVIW-LRL  214 (291)
T ss_dssp             EEEE-CCC
T ss_pred             EEEE-eCc
Confidence            9988 554

>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A*

Probab=95.93  E-value=0.036  Score=51.60  Aligned_cols=108  Identities=19%  Similarity=0.204  Sum_probs=61.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhc-CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~a-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      ..+|+|+|.|.+|.++|..|+.. +.-+|..||..++. .+........-. .....+..+..  +..+.+++||+|+++
T Consensus         6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~-~~g~~~dl~~~~-~~~~~~~~v~~--~~~~a~~~aDvVvi~   81 (317)
T 3d0o_A            6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEK-VRGDVMDLKHAT-PYSPTTVRVKA--GEYSDCHDADLVVIC   81 (317)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHH-HHHHHHHHHHHG-GGSSSCCEEEE--CCGGGGTTCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhH-hhhhhhhHHhhh-hhcCCCeEEEe--CCHHHhCCCCEEEEC
Confidence            35899999999999999887532 33489999987532 222111110000 00001111211  335668999999999


Q ss_pred             CCCCcccccc------------cC--HHHHhcCCCCcEEEEcCCCcccCH
Q 019387          244 PVLDKTTYHL------------IN--KERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       244 ~pl~~~t~~l------------i~--~~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      .+.. ...+.            +-  .+.+....|++.+++++  ..+|.
T Consensus        82 ag~~-~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~  128 (317)
T 3d0o_A           82 AGAA-QKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDI  128 (317)
T ss_dssp             CCCC-CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHH
T ss_pred             CCCC-CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHH
Confidence            8653 22221            11  12333447899999986  44443

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=95.93  E-value=0.0097  Score=56.28  Aligned_cols=67  Identities=15%  Similarity=0.184  Sum_probs=46.9

Q ss_pred             CeEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEEE
Q 019387          166 QTVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~-vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV~  241 (342)
                      .+|||||+|.||+. .++.+.+.-++++. ++|+.++.. .   +.+       +    ....+.++++++..  .|+|+
T Consensus         6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~-~---~~~-------~----~~~~~~~~~~ll~~~~vD~V~   70 (362)
T 3fhl_A            6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKELS-K---ERY-------P----QASIVRSFKELTEDPEIDLIV   70 (362)
T ss_dssp             EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCGG-G---TTC-------T----TSEEESCSHHHHTCTTCCEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHH-H---HhC-------C----CCceECCHHHHhcCCCCCEEE
Confidence            48999999999997 67766333378876 578876431 1   001       0    22345799999987  89999


Q ss_pred             EcCCCC
Q 019387          242 LHPVLD  247 (342)
Q Consensus       242 l~~pl~  247 (342)
                      +|+|..
T Consensus        71 i~tp~~   76 (362)
T 3fhl_A           71 VNTPDN   76 (362)
T ss_dssp             ECSCGG
T ss_pred             EeCChH
Confidence            999953

>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*

Probab=95.92  E-value=0.024  Score=53.12  Aligned_cols=99  Identities=20%  Similarity=0.285  Sum_probs=59.4

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHH----HHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEK----FVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      .++|+|+|.|.||..+|..|+ ..|.  +|..+|...+. .+.    ....+. +.    ......  ..+..+.+++||
T Consensus         5 ~~kI~ViGaG~vG~~~a~~l~-~~~~~~~l~l~D~~~~k-~~g~a~DL~~~~~-~~----~~~v~i--~~~~~~a~~~aD   75 (326)
T 3pqe_A            5 VNKVALIGAGFVGSSYAFALI-NQGITDELVVIDVNKEK-AMGDVMDLNHGKA-FA----PQPVKT--SYGTYEDCKDAD   75 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECSCHHH-HHHHHHHHHHTGG-GS----SSCCEE--EEECGGGGTTCS
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEecchHH-HHHHHHHHHhccc-cc----cCCeEE--EeCcHHHhCCCC
Confidence            568999999999999999874 4454  99999997643 222    111110 00    001111  122235789999


Q ss_pred             EEEEcCCCCcccccc-----c--CH-------HHHhcCCCCcEEEEcCC
Q 019387          239 VISLHPVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       239 iV~l~~pl~~~t~~l-----i--~~-------~~l~~mk~ga~lINvaR  273 (342)
                      +|+++.+. +...+.     +  |.       +.+....|++++++++-
T Consensus        76 vVvi~ag~-p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtN  123 (326)
T 3pqe_A           76 IVCICAGA-NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATN  123 (326)
T ss_dssp             EEEECCSC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             EEEEeccc-CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCC
Confidence            99999763 332222     1  11       23444567899999984

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=95.92  E-value=0.025  Score=53.50  Aligned_cols=95  Identities=17%  Similarity=0.131  Sum_probs=62.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccc-cCCHHHHhh-----
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~~ll~-----  235 (342)
                      .|++|.|+|.|.||...++. ++.+|+ +|++.+++++.....  ..+       +.... .... ..++.+.+.     
T Consensus       190 ~g~~VlV~GaG~vG~~avql-a~~~Ga~~Vi~~~~~~~~~~~~--~~l-------Ga~~vi~~~~~~~~~~~~v~~~~~~  259 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMG-CKVAGASRIIGVDINKDKFARA--KEF-------GATECINPQDFSKPIQEVLIEMTDG  259 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHHTCSEEEEECSCGGGHHHH--HHH-------TCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHHHHH--HHc-------CCceEeccccccccHHHHHHHHhCC
Confidence            48899999999999999998 589999 899998876543111  111       11110 0111 123444333     


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCC-cEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~g-a~lINvaR  273 (342)
                      ..|+|+.+... +++    -...++.++++ ..+|.++-
T Consensus       260 g~D~vid~~g~-~~~----~~~~~~~l~~~~G~iv~~G~  293 (373)
T 2fzw_A          260 GVDYSFECIGN-VKV----MRAALEACHKGWGVSVVVGV  293 (373)
T ss_dssp             CBSEEEECSCC-HHH----HHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCc-HHH----HHHHHHhhccCCcEEEEEec
Confidence            48999998863 121    25668889999 89998874

>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A

Probab=95.92  E-value=0.0079  Score=58.97  Aligned_cols=76  Identities=9%  Similarity=0.128  Sum_probs=49.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc--cccccCCHHHHhhcCCEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~aDiV~  241 (342)
                      .+++|+|+|.|.||+.+++.|+ ..|.+|.++|++.+.. +.....+.      .....  ......++++++.++|+|+
T Consensus         2 ~~k~VlViGaG~iG~~ia~~L~-~~G~~V~v~~R~~~~a-~~la~~~~------~~~~~~~Dv~d~~~l~~~l~~~DvVI   73 (450)
T 1ff9_A            2 ATKSVLMLGSGFVTRPTLDVLT-DSGIKVTVACRTLESA-KKLSAGVQ------HSTPISLDVNDDAALDAEVAKHDLVI   73 (450)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHH-TTTCEEEEEESSHHHH-HHTTTTCT------TEEEEECCTTCHHHHHHHHTTSSEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCcCEEEEEECCHHHH-HHHHHhcC------CceEEEeecCCHHHHHHHHcCCcEEE
Confidence            3689999999999999999984 6789999999876432 21111000      00000  1111235668888999999


Q ss_pred             EcCCCC
Q 019387          242 LHPVLD  247 (342)
Q Consensus       242 l~~pl~  247 (342)
                      .|.|..
T Consensus        74 n~a~~~   79 (450)
T 1ff9_A           74 SLIPYT   79 (450)
T ss_dssp             ECCC--
T ss_pred             ECCccc
Confidence            999864

>3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica}

Probab=95.90  E-value=0.12  Score=50.51  Aligned_cols=170  Identities=16%  Similarity=0.163  Sum_probs=108.5

Q ss_pred             CCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhc
Q 019387          108 YGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEG  187 (342)
Q Consensus       108 ~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~a  187 (342)
                      ..|+|.|+--   ..+|=.+++-+++.+|-.                     |..|...+|.|.|.|.-|-.+|+.| ..
T Consensus       186 ~~ipvFnDD~---qGTA~V~lAgllnAlki~---------------------gk~l~d~riV~~GAGaAGigia~ll-~~  240 (487)
T 3nv9_A          186 CDIPVWHDDQ---QGTASVTLAGLLNALKLV---------------------KKDIHECRMVFIGAGSSNTTCLRLI-VT  240 (487)
T ss_dssp             CSSCEEETTT---HHHHHHHHHHHHHHHHHH---------------------TCCGGGCCEEEECCSHHHHHHHHHH-HH
T ss_pred             ccCCcccccc---chHHHHHHHHHHHHHHHh---------------------CCChhhcEEEEECCCHHHHHHHHHH-HH
Confidence            3799999874   456667788888887632                     4578899999999999999999997 57


Q ss_pred             CCc---EEEEEcCCc---hhH--HHHHH-hhhh-hhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHH
Q 019387          188 FKM---NLIYYDLYQ---ATR--LEKFV-TAYG-QFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKE  257 (342)
Q Consensus       188 fg~---~V~~~d~~~---~~~--~~~~~-~~~~-~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~  257 (342)
                      .|.   +++.+|+..   ..+  ...+. ..+. .+..... .    ....+|.|+++.+|+++=+--  . ..+.|+++
T Consensus       241 ~G~~~~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n-~----~~~~~L~eav~~adVlIG~S~--~-~pg~ft~e  312 (487)
T 3nv9_A          241 AGADPKKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTN-P----SKFGSIAEACVGADVLISLST--P-GPGVVKAE  312 (487)
T ss_dssp             TTCCGGGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSC-T----TCCCSHHHHHTTCSEEEECCC--S-SCCCCCHH
T ss_pred             cCCCcccEEEEeccccccCCcchhhhhcccHHHHHHHHhcc-c----ccCCCHHHHHhcCCEEEEecc--c-CCCCCCHH
Confidence            898   799999863   122  11100 0000 0111111 0    024689999999998765431  1 15899999


Q ss_pred             HHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCC-ceEEEEecCCCCCCCcccccccc
Q 019387          258 RLATMKKEAILVNCSRGPV-IDEVALVEHLKQNP-MFRVGLDVFEVTELGFSSFKHIS  313 (342)
Q Consensus       258 ~l~~mk~ga~lINvaRG~~-vd~~aL~~aL~~g~-i~~aaLDV~~~EP~~~~~tPhia  313 (342)
                      .++.|.+..++.=.|.-.. +..++.+   +.|+ |.+-+---|.++=.|+++.|-|.
T Consensus       313 ~V~~Ma~~PIIFaLSNPtpEi~pe~A~---~~G~aIvATGrsd~PnQ~NN~liFPGI~  367 (487)
T 3nv9_A          313 WIKSMGEKPIVFCCANPVPEIYPYEAK---EAGAYIVATGRGDFPNQVNNSVGFPGIL  367 (487)
T ss_dssp             HHHTSCSSCEEEECCSSSCSSCHHHHH---HTTCSEEEESCTTSSSBCCGGGTHHHHH
T ss_pred             HHHhhcCCCEEEECCCCCccCCHHHHH---HhCCEEEEECCCCCcccCcceeEcchhh
Confidence            9999999999988876543 2223333   3455 33333211222227888887763

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=95.89  E-value=0.034  Score=52.66  Aligned_cols=95  Identities=15%  Similarity=0.075  Sum_probs=62.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccc-cCCHHHHhh-----
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~~ll~-----  235 (342)
                      .|++|.|+|.|.||...++. ++.+|+ +|++.++++++....  ..+       +.... .... ..++.+.+.     
T Consensus       195 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~~~a--~~l-------Ga~~vi~~~~~~~~~~~~v~~~~~~  264 (376)
T 1e3i_A          195 PGSTCAVFGLGCVGLSAIIG-CKIAGASRIIAIDINGEKFPKA--KAL-------GATDCLNPRELDKPVQDVITELTAG  264 (376)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEECSCGGGHHHH--HHT-------TCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHHHHH--HHh-------CCcEEEccccccchHHHHHHHHhCC
Confidence            48899999999999999998 589999 899999876543111  111       11110 1111 123444332     


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCC-cEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~g-a~lINvaR  273 (342)
                      ..|+|+-+... +++    -...++.+++| ..+|.++-
T Consensus       265 g~Dvvid~~G~-~~~----~~~~~~~l~~~~G~iv~~G~  298 (376)
T 1e3i_A          265 GVDYSLDCAGT-AQT----LKAAVDCTVLGWGSCTVVGA  298 (376)
T ss_dssp             CBSEEEESSCC-HHH----HHHHHHTBCTTTCEEEECCC
T ss_pred             CccEEEECCCC-HHH----HHHHHHHhhcCCCEEEEECC
Confidence            48999998863 121    24568889998 88888864

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=95.87  E-value=0.012  Score=55.75  Aligned_cols=95  Identities=18%  Similarity=0.169  Sum_probs=61.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-------
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-------  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-------  235 (342)
                      .|++|.|+|.|.+|...++. ++.+|+ +|++.+++++...  +...+       +....-.....++.+.+.       
T Consensus       182 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~~--~a~~l-------Ga~~vi~~~~~~~~~~i~~~~~~~~  251 (370)
T 4ej6_A          182 AGSTVAILGGGVIGLLTVQL-ARLAGATTVILSTRQATKRR--LAEEV-------GATATVDPSAGDVVEAIAGPVGLVP  251 (370)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEECSCHHHHH--HHHHH-------TCSEEECTTSSCHHHHHHSTTSSST
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHHH--HHHHc-------CCCEEECCCCcCHHHHHHhhhhccC
Confidence            48899999999999999998 589999 8999988765431  11111       111110011234444443       


Q ss_pred             -cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          236 -EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 -~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                       ..|+|+-+... ++    .-...++.+++|..++.++-
T Consensus       252 gg~Dvvid~~G~-~~----~~~~~~~~l~~~G~vv~~G~  285 (370)
T 4ej6_A          252 GGVDVVIECAGV-AE----TVKQSTRLAKAGGTVVILGV  285 (370)
T ss_dssp             TCEEEEEECSCC-HH----HHHHHHHHEEEEEEEEECSC
T ss_pred             CCCCEEEECCCC-HH----HHHHHHHHhccCCEEEEEec
Confidence             37999988753 21    12456778888988888864

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=95.86  E-value=0.0099  Score=54.56  Aligned_cols=92  Identities=16%  Similarity=0.115  Sum_probs=60.4

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccccc--CCHHHHhhcCCEE
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLREADVI  240 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~ll~~aDiV  240 (342)
                      .|++|.|+|. |.||+.+++.+ +.+|++|++.+++++.....  ..+       +.... +...  .++.+.+...|+|
T Consensus       125 ~g~~vlV~Ga~G~vG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~--~~~-------ga~~~-~~~~~~~~~~~~~~~~d~v  193 (302)
T 1iz0_A          125 PGEKVLVQAAAGALGTAAVQVA-RAMGLRVLAAASRPEKLALP--LAL-------GAEEA-ATYAEVPERAKAWGGLDLV  193 (302)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSGGGSHHH--HHT-------TCSEE-EEGGGHHHHHHHTTSEEEE
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH--Hhc-------CCCEE-EECCcchhHHHHhcCceEE
Confidence            4789999998 99999999985 89999999999876543111  111       11111 1111  1233334678999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      +. ...  +    .-...++.|+++..++.++-
T Consensus       194 id-~g~--~----~~~~~~~~l~~~G~~v~~g~  219 (302)
T 1iz0_A          194 LE-VRG--K----EVEESLGLLAHGGRLVYIGA  219 (302)
T ss_dssp             EE-CSC--T----THHHHHTTEEEEEEEEEC--
T ss_pred             EE-CCH--H----HHHHHHHhhccCCEEEEEeC
Confidence            98 653  1    23567888999999998874

>3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus}

Probab=95.85  E-value=0.018  Score=54.03  Aligned_cols=116  Identities=16%  Similarity=0.225  Sum_probs=69.5

Q ss_pred             eEEEEecCHHHHHHHHHHHhc--------CCcEEEE-EcCCchhH----HHHHHhhhhhhhhccCCCCccccccCCHHHH
Q 019387          167 TVGVIGAGRIGSAYARMMVEG--------FKMNLIY-YDLYQATR----LEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~a--------fg~~V~~-~d~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  233 (342)
                      +|||+|+|.||+.+++.+.+.        .+.+|.+ +|+++...    ...+....   . ...  .  +....+++++
T Consensus         4 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~---~-~~~--~--~~~~~d~~~l   75 (327)
T 3do5_A            4 KIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMK---R-ETG--M--LRDDAKAIEV   75 (327)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHH---H-HHS--S--CSBCCCHHHH
T ss_pred             EEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhh---c-cCc--c--ccCCCCHHHH
Confidence            799999999999999987443        6788775 56654321    11111100   0 000  0  0002388999


Q ss_pred             hhc--CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCCc
Q 019387          234 LRE--ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNPM  291 (342)
Q Consensus       234 l~~--aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v-d~~aL~~aL~~g~i  291 (342)
                      +.+  .|+|+.|+|...++.. .-.-....++.|.-+|-..-+.+. .-+.|.++.++.+.
T Consensus        76 l~~~~iDvVv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g~  135 (327)
T 3do5_A           76 VRSADYDVLIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNGV  135 (327)
T ss_dssp             HHHSCCSEEEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTTC
T ss_pred             hcCCCCCEEEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhCC
Confidence            864  8999999995433222 223456778888888877655553 45667776665544

>3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O

Probab=95.85  E-value=0.017  Score=54.45  Aligned_cols=30  Identities=30%  Similarity=0.565  Sum_probs=24.3

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d  196 (342)
                      +|||+|+|+||+.++|.|...=+++|.+..
T Consensus         5 kVgI~G~GrIGr~l~R~l~~~p~vevvaI~   34 (337)
T 3e5r_O            5 KIGINGFGRIGRLVARVALQSEDVELVAVN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEE
T ss_pred             EEEEECcCHHHHHHHHHHhCCCCeEEEEEE
Confidence            799999999999999987432378877654

>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}

Probab=95.83  E-value=0.017  Score=55.53  Aligned_cols=70  Identities=24%  Similarity=0.346  Sum_probs=47.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhc--------CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-
Q 019387          166 QTVGVIGAGRIGSAYARMMVEG--------FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-  235 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~a--------fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-  235 (342)
                      -+|||||+|.||+.-++.+.+.        -+++|. ++|++++. .+++.+.|       +..    ..+.+++++++ 
T Consensus        27 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~-a~~~a~~~-------~~~----~~y~d~~~ll~~   94 (412)
T 4gqa_A           27 LNIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAM-AERHAAKL-------GAE----KAYGDWRELVND   94 (412)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHH-HHHHHHHH-------TCS----EEESSHHHHHHC
T ss_pred             ceEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHH-HHHHHHHc-------CCC----eEECCHHHHhcC
Confidence            3899999999999888766321        146766 57887653 33333333       111    23579999996 


Q ss_pred             -cCCEEEEcCCCC
Q 019387          236 -EADVISLHPVLD  247 (342)
Q Consensus       236 -~aDiV~l~~pl~  247 (342)
                       +-|+|++|+|..
T Consensus        95 ~~vD~V~I~tp~~  107 (412)
T 4gqa_A           95 PQVDVVDITSPNH  107 (412)
T ss_dssp             TTCCEEEECSCGG
T ss_pred             CCCCEEEECCCcH
Confidence             578999999953

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=95.82  E-value=0.013  Score=55.36  Aligned_cols=96  Identities=15%  Similarity=0.191  Sum_probs=62.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .|++|.|+|.|.||...++. ++.+|++|++.+++++..... ...+       +.... .....+.+.++....|+|+-
T Consensus       180 ~g~~VlV~GaG~vG~~a~ql-ak~~Ga~Vi~~~~~~~~~~~~-~~~l-------Ga~~vi~~~~~~~~~~~~~g~D~vid  250 (357)
T 2cf5_A          180 PGLRGGILGLGGVGHMGVKI-AKAMGHHVTVISSSNKKREEA-LQDL-------GADDYVIGSDQAKMSELADSLDYVID  250 (357)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHHTCEEEEEESSTTHHHHH-HTTS-------CCSCEEETTCHHHHHHSTTTEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHCCCeEEEEeCChHHHHHH-HHHc-------CCceeeccccHHHHHHhcCCCCEEEE
Confidence            58899999999999999998 588999999999876543111 1011       11111 00000122333346899998


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ++....     .-...++.++++..++.++-
T Consensus       251 ~~g~~~-----~~~~~~~~l~~~G~iv~~G~  276 (357)
T 2cf5_A          251 TVPVHH-----ALEPYLSLLKLDGKLILMGV  276 (357)
T ss_dssp             CCCSCC-----CSHHHHTTEEEEEEEEECSC
T ss_pred             CCCChH-----HHHHHHHHhccCCEEEEeCC
Confidence            886321     12456788899999998874

>3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis}

Probab=95.78  E-value=0.053  Score=53.07  Aligned_cols=97  Identities=13%  Similarity=0.141  Sum_probs=65.7

Q ss_pred             cccCCCeEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCH
Q 019387          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~L~gktvgIvG~G----------~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      ..+.|++|+|+|+-          .=...+++.| ...|++|.+|||........   .|+          .......++
T Consensus       314 ~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~~----------~~~~~~~~~  379 (450)
T 3gg2_A          314 GNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKL-LEVGCRVRVYDPVAMKEAQK---RLG----------DKVEYTTDM  379 (450)
T ss_dssp             TCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSCHHHHHH---HHG----------GGSEECSSH
T ss_pred             ccCCCCEEEEEeeeeCCCCcccccChHHHHHHHH-HHCCCEEEEECCCCcHHHHH---hcC----------ccceecCCH
Confidence            45799999999984          3467889987 68999999999987532111   111          012234688


Q ss_pred             HHHhhcCCEEEEcCCCCcccccccCHHH-HhcCCCCcEEEEcCCCc
Q 019387          231 DEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCSRGP  275 (342)
Q Consensus       231 ~~ll~~aDiV~l~~pl~~~t~~li~~~~-l~~mk~ga~lINvaRG~  275 (342)
                      ++.++++|.|+++++= ++-+. ++-+. .+.|+ +.+++|+ |+-
T Consensus       380 ~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~-~~~i~D~-r~~  421 (450)
T 3gg2_A          380 YDAVRGAEALFHVTEW-KEFRM-PDWSALSQAMA-ASLVIDG-RNV  421 (450)
T ss_dssp             HHHTTTCSCEEECSCC-GGGSS-CCHHHHHHHSS-SCEEEES-SCC
T ss_pred             HHHhcCCCEEEEccCC-HHHhh-cCHHHHHHhcC-CCEEEEC-CCC
Confidence            9999999999999863 33333 34443 44566 5688885 653

>3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A*

Probab=95.77  E-value=0.0088  Score=52.70  Aligned_cols=70  Identities=20%  Similarity=0.232  Sum_probs=46.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHH-hcCCcEEE-EEcCCch-hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCE
Q 019387          165 GQTVGVIGAGRIGSAYARMMV-EGFKMNLI-YYDLYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADV  239 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~-~afg~~V~-~~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDi  239 (342)
                      .++++|+|.|++|+.+++.+. +..|+++. ++|..+. ....            +......+...+++++++++  .|.
T Consensus        84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~------------~~i~GvpV~~~~dL~~~v~~~~Id~  151 (212)
T 3keo_A           84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGK------------TTEDGIPVYGISTINDHLIDSDIET  151 (212)
T ss_dssp             CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTC------------BCTTCCBEEEGGGHHHHC-CCSCCE
T ss_pred             CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCc------------eeECCeEEeCHHHHHHHHHHcCCCE
Confidence            358999999999999998621 34688877 4787765 3200            00112223345788888874  899


Q ss_pred             EEEcCCC
Q 019387          240 ISLHPVL  246 (342)
Q Consensus       240 V~l~~pl  246 (342)
                      +++|+|.
T Consensus       152 vIIAvPs  158 (212)
T 3keo_A          152 AILTVPS  158 (212)
T ss_dssp             EEECSCG
T ss_pred             EEEecCc
Confidence            9999995

>2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii}

Probab=95.77  E-value=0.017  Score=54.67  Aligned_cols=30  Identities=27%  Similarity=0.223  Sum_probs=23.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY  195 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~  195 (342)
                      .+|||+|+|+||+.+++.|...=++++.+.
T Consensus         3 ikVgI~G~G~IGr~v~r~l~~~~~~evvaV   32 (343)
T 2yyy_A            3 AKVLINGYGSIGKRVADAVSMQDDMEVIGV   32 (343)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHSSSEEEEEE
T ss_pred             eEEEEECCCHHHHHHHHHHHhCCCceEEEE
Confidence            379999999999999998743236887754

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=95.75  E-value=0.02  Score=50.17  Aligned_cols=77  Identities=12%  Similarity=0.116  Sum_probs=50.8

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCC-CCccccccCCHHHHhhcCC
Q 019387          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       161 ~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ll~~aD  238 (342)
                      ..+.|++|.|.|- |.||+.+++.|+ .-|.+|++.+++++... ....        .+. .....+...++.+.+.++|
T Consensus        17 ~~l~~~~ilVtGatG~iG~~l~~~L~-~~G~~V~~~~R~~~~~~-~~~~--------~~~~~~~~~Dl~~~~~~~~~~~D   86 (236)
T 3e8x_A           17 LYFQGMRVLVVGANGKVARYLLSELK-NKGHEPVAMVRNEEQGP-ELRE--------RGASDIVVANLEEDFSHAFASID   86 (236)
T ss_dssp             ----CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSGGGHH-HHHH--------TTCSEEEECCTTSCCGGGGTTCS
T ss_pred             cCcCCCeEEEECCCChHHHHHHHHHH-hCCCeEEEEECChHHHH-HHHh--------CCCceEEEcccHHHHHHHHcCCC
Confidence            5689999999998 999999999984 67999999999875422 1110        011 1010011156778889999


Q ss_pred             EEEEcCCCC
Q 019387          239 VISLHPVLD  247 (342)
Q Consensus       239 iV~l~~pl~  247 (342)
                      +|+.+....
T Consensus        87 ~vi~~ag~~   95 (236)
T 3e8x_A           87 AVVFAAGSG   95 (236)
T ss_dssp             EEEECCCCC
T ss_pred             EEEECCCCC
Confidence            999887654

>3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A*

Probab=95.73  E-value=0.04  Score=53.66  Aligned_cols=88  Identities=14%  Similarity=0.212  Sum_probs=63.8

Q ss_pred             ccCCCeEEEEecC----------HHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCH
Q 019387          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       162 ~L~gktvgIvG~G----------~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .+.|++|+|+|+-          .-...+++.| ... |++|.+|||.....                      ....++
T Consensus       312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L-~~~~g~~V~~~DP~~~~~----------------------~~~~~~  368 (431)
T 3ojo_A          312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELL-NQEPDIEVCAYDPHVELD----------------------FVEHDM  368 (431)
T ss_dssp             HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHH-HHSTTCEEEEECSSCCCT----------------------TBCSTT
T ss_pred             hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHH-HhhcCCEEEEECCCcccc----------------------cccCCH
Confidence            4789999999974          3467889987 677 99999999986431                      123678


Q ss_pred             HHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       231 ~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      ++.++++|.|+++.+= ++-+. ++.+.++.|+ +.+++|+ |+-+
T Consensus       369 ~~~~~~ad~vvi~t~~-~~f~~-~d~~~~~~~~-~~~i~D~-r~~~  410 (431)
T 3ojo_A          369 SHAVKDASLVLILSDH-SEFKN-LSDSHFDKMK-HKVIFDT-KNVV  410 (431)
T ss_dssp             HHHHTTCSEEEECSCC-GGGTS-CCGGGGTTCS-SCEEEES-SCCC
T ss_pred             HHHHhCCCEEEEecCC-HHHhc-cCHHHHHhCC-CCEEEEC-CCCC
Confidence            8999999999999863 33332 3444557777 6788886 5543

>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A

Probab=95.73  E-value=0.0087  Score=55.59  Aligned_cols=99  Identities=12%  Similarity=0.174  Sum_probs=55.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .++|+|||.|.||..+|..++ .-|.  +|..+|...+ ......+.. . .   ...  ......++ +.+++||+|++
T Consensus        14 ~~kV~ViGaG~vG~~~a~~l~-~~g~~~ev~L~Di~~~-~~g~a~dl~-~-~---~~~--~i~~t~d~-~~l~~aD~Vi~   83 (303)
T 2i6t_A           14 VNKITVVGGGELGIACTLAIS-AKGIADRLVLLDLSEG-TKGATMDLE-I-F---NLP--NVEISKDL-SASAHSKVVIF   83 (303)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCSEEEEECCC------CHHHHH-H-H---TCT--TEEEESCG-GGGTTCSEEEE
T ss_pred             CCEEEEECCCHHHHHHHHHHH-hcCCCCEEEEEcCCcc-hHHHHHHHh-h-h---cCC--CeEEeCCH-HHHCCCCEEEE
Confidence            378999999999999998765 3345  9999999864 211111110 0 0   111  12223466 56899999999


Q ss_pred             cCCCCc----------ccccccCH--HHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDK----------TTYHLINK--ERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~----------~t~~li~~--~~l~~mk~ga~lINvaR  273 (342)
                      +.....          +|..++-+  ..+....|.+++++++-
T Consensus        84 aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sN  126 (303)
T 2i6t_A           84 TVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQ  126 (303)
T ss_dssp             CCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCC
Confidence            973311          11111111  12233347899999876

>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}

Probab=95.73  E-value=0.019  Score=52.87  Aligned_cols=98  Identities=12%  Similarity=0.093  Sum_probs=58.5

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|+|+| +|+||+.+++.+.+.=++++.+ +|+..+.....   ..+.+   .+..+.++....++++++.++|+|+-.
T Consensus        22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~---d~gel---~G~~~~gv~v~~dl~~ll~~aDVvIDF   95 (288)
T 3ijp_A           22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDK---DASIL---IGSDFLGVRITDDPESAFSNTEGILDF   95 (288)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTS---BGGGG---TTCSCCSCBCBSCHHHHTTSCSEEEEC
T ss_pred             eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCcccccc---chHHh---hccCcCCceeeCCHHHHhcCCCEEEEc
Confidence            4899999 9999999999875456888764 68764321000   00000   111223444567999999999999877


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      .+  |+..   .+..-..++.|.-+|-...|
T Consensus        96 T~--p~a~---~~~~~~~l~~Gv~vViGTTG  121 (288)
T 3ijp_A           96 SQ--PQAS---VLYANYAAQKSLIHIIGTTG  121 (288)
T ss_dssp             SC--HHHH---HHHHHHHHHHTCEEEECCCC
T ss_pred             CC--HHHH---HHHHHHHHHcCCCEEEECCC
Confidence            64  3211   11122234456666665566

>3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A*

Probab=95.70  E-value=0.015  Score=53.68  Aligned_cols=38  Identities=24%  Similarity=0.521  Sum_probs=32.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQ  199 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~  199 (342)
                      ..|.+++|.|||.|.+|..+|+.|+ ..|. ++..+|...
T Consensus        32 ~kL~~~~VlVvGaGGlGs~va~~La-~aGVG~i~lvD~D~   70 (292)
T 3h8v_A           32 EKIRTFAVAIVGVGGVGSVTAEMLT-RCGIGKLLLFDYDK   70 (292)
T ss_dssp             CGGGGCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCB
T ss_pred             HHHhCCeEEEECcCHHHHHHHHHHH-HcCCCEEEEECCCc
Confidence            4689999999999999999999986 5565 788888654

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=95.69  E-value=0.017  Score=54.12  Aligned_cols=93  Identities=22%  Similarity=0.192  Sum_probs=60.5

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh----h--c
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----R--E  236 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll----~--~  236 (342)
                      .|++|.|.|. |.||..+++.+ +.+|++|++.+++.+....  ...+       +.... +....++.+.+    .  .
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~--~~~~-------ga~~v-~~~~~~~~~~v~~~~~~~g  227 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIA-KGMGAKVIAVVNRTAATEF--VKSV-------GADIV-LPLEEGWAKAVREATGGAG  227 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSGGGHHH--HHHH-------TCSEE-EESSTTHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHH--HHhc-------CCcEE-ecCchhHHHHHHHHhCCCC
Confidence            5889999998 99999999985 8999999999987654311  1111       11111 11112333322    2  4


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+|+.|....      .-...+..+++|..++.++.
T Consensus       228 ~Dvvid~~g~~------~~~~~~~~l~~~G~iv~~G~  258 (342)
T 4eye_A          228 VDMVVDPIGGP------AFDDAVRTLASEGRLLVVGF  258 (342)
T ss_dssp             EEEEEESCC--------CHHHHHHTEEEEEEEEEC--
T ss_pred             ceEEEECCchh------HHHHHHHhhcCCCEEEEEEc
Confidence            89999888642      23567888999999999873

>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1

Probab=95.68  E-value=0.028  Score=52.43  Aligned_cols=121  Identities=15%  Similarity=0.188  Sum_probs=64.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccC--CCCccccccCCHHHHhhcCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANG--EQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .+|+|+|.|.+|.++|..|+ ..|.  +|..+|...+. .+.....    +....  ..+..+.. .+ .+.+++||+|+
T Consensus         8 ~KI~IiGaG~vG~~~a~~l~-~~~~~~ev~L~Di~~~~-~~g~~~d----l~~~~~~~~~~~i~~-~~-~~a~~~aDvVi   79 (318)
T 1y6j_A            8 SKVAIIGAGFVGASAAFTMA-LRQTANELVLIDVFKEK-AIGEAMD----INHGLPFMGQMSLYA-GD-YSDVKDCDVIV   79 (318)
T ss_dssp             CCEEEECCSHHHHHHHHHHH-HTTCSSEEEEECCC----CCHHHHH----HTTSCCCTTCEEEC---C-GGGGTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCCEEEEEeCChHH-HHHHHHH----HHHhHHhcCCeEEEE-CC-HHHhCCCCEEE
Confidence            58999999999999998875 4455  99999987532 1111111    11100  01111211 23 45689999999


Q ss_pred             EcCCCCcccccc------------cC--HHHHhcCCCCcEEEEcCCCcccCHHH--HHHH--HHcCCceEE--EEe
Q 019387          242 LHPVLDKTTYHL------------IN--KERLATMKKEAILVNCSRGPVIDEVA--LVEH--LKQNPMFRV--GLD  297 (342)
Q Consensus       242 l~~pl~~~t~~l------------i~--~~~l~~mk~ga~lINvaRG~~vd~~a--L~~a--L~~g~i~~a--aLD  297 (342)
                      ++.+. +...+.            +-  .+.+....|++.+++++  ..+|.-.  +.+.  +...++.|.  .||
T Consensus        80 i~~g~-p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~~~~~~k~s~~p~~rviG~gt~Ld  152 (318)
T 1y6j_A           80 VTAGA-NRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS--NPVDIITYMIQKWSGLPVGKVIGSGTVLD  152 (318)
T ss_dssp             ECCCC-------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS--SSHHHHHHHHHHHHTCCTTTEEECTTHHH
T ss_pred             EcCCC-CCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHcCCCHHHEeccCCchH
Confidence            99875 332222            10  12233336899999974  4444433  3332  223366665  356

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=95.65  E-value=0.019  Score=53.95  Aligned_cols=69  Identities=16%  Similarity=0.247  Sum_probs=45.9

Q ss_pred             CeEEEEecCHHHH-HHHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEE
Q 019387          166 QTVGVIGAGRIGS-AYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (342)
Q Consensus       166 ktvgIvG~G~IG~-~vA~~l~~af-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV  240 (342)
                      .+|||||+|.||+ ..++.+ +.. +++|. ++|+....   .+.+.++       .  .+...+.++++++..  .|+|
T Consensus         3 ~rvgiiG~G~~g~~~~~~~l-~~~~~~~l~av~d~~~~~---~~a~~~~-------~--~~~~~~~~~~~ll~~~~~D~V   69 (349)
T 3i23_A            3 VKMGFIGFGKSANRYHLPYV-MIRETLEVKTIFDLHVNE---KAAAPFK-------E--KGVNFTADLNELLTDPEIELI   69 (349)
T ss_dssp             EEEEEECCSHHHHHTTHHHH-TTCTTEEEEEEECTTCCH---HHHHHHH-------T--TTCEEESCTHHHHSCTTCCEE
T ss_pred             eEEEEEccCHHHHHHHHHHH-hhCCCeEEEEEECCCHHH---HHHHhhC-------C--CCCeEECCHHHHhcCCCCCEE
Confidence            3799999999999 567766 444 78876 67876222   2111110       0  012345799999986  8999


Q ss_pred             EEcCCCC
Q 019387          241 SLHPVLD  247 (342)
Q Consensus       241 ~l~~pl~  247 (342)
                      ++|+|..
T Consensus        70 ~i~tp~~   76 (349)
T 3i23_A           70 TICTPAH   76 (349)
T ss_dssp             EECSCGG
T ss_pred             EEeCCcH
Confidence            9999953

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.64  E-value=0.015  Score=55.05  Aligned_cols=95  Identities=9%  Similarity=0.031  Sum_probs=61.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-----cC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-----~a  237 (342)
                      .|++|.|+|.|.||...++. ++.+|+ +|++.+++++....  ...+       +....-.....++.+.+.     ..
T Consensus       190 ~g~~VlV~GaG~vG~~a~ql-ak~~Ga~~Vi~~~~~~~~~~~--a~~l-------Ga~~vi~~~~~~~~~~~~~~~~gg~  259 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLA-AKVCGASIIIAVDIVESRLEL--AKQL-------GATHVINSKTQDPVAAIKEITDGGV  259 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHH-HHHHTCSEEEEEESCHHHHHH--HHHH-------TCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEECCCHHHHHH--HHHc-------CCCEEecCCccCHHHHHHHhcCCCC
Confidence            48899999999999999998 588999 79999887654211  1111       111110001123333222     47


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+|+.+... +++    -...++.+++|..++.++-
T Consensus       260 D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~G~  290 (371)
T 1f8f_A          260 NFALESTGS-PEI----LKQGVDALGILGKIAVVGA  290 (371)
T ss_dssp             EEEEECSCC-HHH----HHHHHHTEEEEEEEEECCC
T ss_pred             cEEEECCCC-HHH----HHHHHHHHhcCCEEEEeCC
Confidence            999988863 111    2456888999999999874

>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2

Probab=95.64  E-value=0.022  Score=55.82  Aligned_cols=127  Identities=15%  Similarity=0.184  Sum_probs=73.9

Q ss_pred             CeEEEEecCHH-HHHHHHHHHh---cC-CcEEEEEcCCc--hhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          166 QTVGVIGAGRI-GSAYARMMVE---GF-KMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       166 ktvgIvG~G~I-G~~vA~~l~~---af-g~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      .+|+|||.|.. |..++..|++   .+ +-+|..||+.+  +. .+...+ ....+......+..+....++.+.+++||
T Consensus         8 ~KIaVIGaGsv~~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~-~~~~~~-~~~~~~~~~~~~~~i~~t~D~~eal~gAD   85 (450)
T 1s6y_A            8 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEK-LEIVGA-LAKRMVEKAGVPIEIHLTLDRRRALDGAD   85 (450)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHH-HHHHHH-HHHHHHHHTTCCCEEEEESCHHHHHTTCS
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCCCCCCEEEEEEcCCChHH-HHHHHH-HHHHHHhhcCCCcEEEEeCCHHHHhCCCC
Confidence            48999999999 8887665543   45 56899999977  43 222111 11111111112333444468888999999


Q ss_pred             EEEEcCCCCcc-----------ccccc--------------------C--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 019387          239 VISLHPVLDKT-----------TYHLI--------------------N--KERLATMKKEAILVNCSRGPVIDEVALVEH  285 (342)
Q Consensus       239 iV~l~~pl~~~-----------t~~li--------------------~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~a  285 (342)
                      +|+++.|....           ..+++                    -  .+.+....|++++||++-.--+-..++.+.
T Consensus        86 ~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvdivT~a~~k~  165 (450)
T 1s6y_A           86 FVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAGMVTEAVLRY  165 (450)
T ss_dssp             EEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHh
Confidence            99999985321           11111                    0  133444568999999987654444555444


Q ss_pred             HHcCCceEE
Q 019387          286 LKQNPMFRV  294 (342)
Q Consensus       286 L~~g~i~~a  294 (342)
                      ....++.|.
T Consensus       166 ~p~~rViG~  174 (450)
T 1s6y_A          166 TKQEKVVGL  174 (450)
T ss_dssp             CCCCCEEEC
T ss_pred             CCCCCEEEe
Confidence            322245544

>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}

Probab=95.62  E-value=0.027  Score=54.00  Aligned_cols=72  Identities=13%  Similarity=0.169  Sum_probs=48.8

Q ss_pred             CeEEEEecCH---HHHHHHHHHHhcCCcEEE--EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc----
Q 019387          166 QTVGVIGAGR---IGSAYARMMVEGFKMNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----  236 (342)
Q Consensus       166 ktvgIvG~G~---IG~~vA~~l~~afg~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~----  236 (342)
                      .+|||||+|.   ||+.-+..+...-++++.  ++|+.++.. +.+.+.+       +...  ...+.++++++..    
T Consensus        13 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a-~~~a~~~-------g~~~--~~~~~~~~~ll~~~~~~   82 (398)
T 3dty_A           13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRG-SAFGEQL-------GVDS--ERCYADYLSMFEQEARR   82 (398)
T ss_dssp             EEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHH-HHHHHHT-------TCCG--GGBCSSHHHHHHHHTTC
T ss_pred             ceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHH-HHHHHHh-------CCCc--ceeeCCHHHHHhccccc
Confidence            5899999999   999988876333347876  468877532 2222222       2110  1245799999976    


Q ss_pred             ---CCEEEEcCCCC
Q 019387          237 ---ADVISLHPVLD  247 (342)
Q Consensus       237 ---aDiV~l~~pl~  247 (342)
                         .|+|++|+|..
T Consensus        83 ~~~vD~V~i~tp~~   96 (398)
T 3dty_A           83 ADGIQAVSIATPNG   96 (398)
T ss_dssp             TTCCSEEEEESCGG
T ss_pred             CCCCCEEEECCCcH
Confidence               89999999954

>1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X*

Probab=95.62  E-value=1  Score=41.96  Aligned_cols=137  Identities=11%  Similarity=0.047  Sum_probs=87.3

Q ss_pred             HHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEE-----EecCHHHHH
Q 019387          105 ANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGV-----IGAGRIGSA  179 (342)
Q Consensus       105 ~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgI-----vG~G~IG~~  179 (342)
                      ++-.+|+|.|..+....++-  +++=++.+.++.         |    +       ..+. .+|++     +|=+++.++
T Consensus       131 A~~~~vPVINa~~~~~HPtQ--aLaDl~Ti~e~~---------g----~-------~~l~-l~ia~a~~~~vGD~rva~S  187 (324)
T 1js1_X          131 IQHSGRPVFSMEAATRHPLQ--SFADLITIEEYK---------K----T-------ARPK-VVMTWAPHPRPLPQAVPNS  187 (324)
T ss_dssp             HHHSSSCEEESSCSSCCHHH--HHHHHHHHHHHC---------S----S-------SSCE-EEEECCCCSSCCCSHHHHH
T ss_pred             HhhCCCCEEECCCCCCCcHH--HHHHHHHHHHHc---------C----C-------CCee-EEEEEEcccccCCcchHHH
Confidence            44557999997775444432  222223332210         1    0       1356 89999     999999999


Q ss_pred             HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC--Cc---------
Q 019387          180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL--DK---------  248 (342)
Q Consensus       180 vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl--~~---------  248 (342)
                      .+..+ ..||++|.+..|..-...+...              ..+....+++++++++|+|..-.-.  ..         
T Consensus       188 l~~~~-~~~G~~v~~~~P~~~~~~~~~~--------------~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r  252 (324)
T 1js1_X          188 FAEWM-NATDYEFVITHPEGYELDPKFV--------------GNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILST  252 (324)
T ss_dssp             HHHHH-HTSSSEEEEECCTTCCCCHHHH--------------TTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCC
T ss_pred             HHHHH-HHCCCEEEEeCCcccCCChhhc--------------cceEEECCHHHHhCCCCEEEecCcccCCCccccchHHH
Confidence            99997 6899999998875421111100              0223457899999999999773321  11         


Q ss_pred             ccccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          249 TTYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       249 ~t~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      ....-++.+.++.+| +++|.-+.   ||.=|+.+
T Consensus       253 ~~~y~vt~e~l~~a~-~ai~MHcLP~~Rg~EI~~e  286 (324)
T 1js1_X          253 DRNWTVGDRQMAVTN-NAYFMHCLPVRRNMIVTDD  286 (324)
T ss_dssp             CTTSSBCHHHHTTSS-SCEEECCSCCCBTTTBCHH
T ss_pred             hcCcccCHHHHHhcC-CcEEECCCCCCCCcccCHH
Confidence            123567889999998 88888875   67666655

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=95.62  E-value=0.023  Score=53.54  Aligned_cols=30  Identities=23%  Similarity=0.443  Sum_probs=23.4

Q ss_pred             eEEEEecCHHHHHHHHHHHhc--CCcEEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYD  196 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~a--fg~~V~~~d  196 (342)
                      +|||+|+|.||+.+.|.|...  =.++|.+.+
T Consensus         3 kVgInG~G~IGr~llR~l~~~~~p~~eivaIn   34 (337)
T 1rm4_O            3 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVIN   34 (337)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence            799999999999999987432  256776544

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=95.60  E-value=0.034  Score=52.09  Aligned_cols=68  Identities=16%  Similarity=0.254  Sum_probs=48.3

Q ss_pred             CeEEEEecC-HHHHHHHHHHHhcC--CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCE
Q 019387          166 QTVGVIGAG-RIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (342)
Q Consensus       166 ktvgIvG~G-~IG~~vA~~l~~af--g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDi  239 (342)
                      .+|||||+| .+|+..++.+ +..  ++++. ++|++++. .+.+.+.|       +.    ...+.++++++.  +.|+
T Consensus        19 irvgiIG~G~~~g~~~~~~l-~~~~~~~~lvav~d~~~~~-~~~~a~~~-------~~----~~~~~~~~~ll~~~~vD~   85 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSH-AEEFAKMV-------GN----PAVFDSYEELLESGLVDA   85 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHH-HHHHHHHH-------SS----CEEESCHHHHHHSSCCSE
T ss_pred             eeEEEEecCHHHHHHHHHHH-HhCCCceEEEEEEcCCHHH-HHHHHHHh-------CC----CcccCCHHHHhcCCCCCE
Confidence            489999999 8999999887 454  67775 68887653 33332222       11    123578999996  5899


Q ss_pred             EEEcCCC
Q 019387          240 ISLHPVL  246 (342)
Q Consensus       240 V~l~~pl  246 (342)
                      |++|+|.
T Consensus        86 V~i~tp~   92 (340)
T 1zh8_A           86 VDLTLPV   92 (340)
T ss_dssp             EEECCCG
T ss_pred             EEEeCCc
Confidence            9999984

>2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A*

Probab=95.60  E-value=0.021  Score=53.01  Aligned_cols=109  Identities=15%  Similarity=0.097  Sum_probs=69.8

Q ss_pred             cccCCCeEEEE-ec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--
Q 019387          161 NLLKGQTVGVI-GA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--  235 (342)
Q Consensus       161 ~~L~gktvgIv-G~-G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--  235 (342)
                      ..+..+++.|| |+ |+.|+.+++.| +..|.+++ ..+|....                 ..-.+...+.+++++..  
T Consensus         9 ~l~~~~siaVV~Gasg~~G~~~~~~l-~~~G~~~v~~VnP~~~g-----------------~~i~G~~vy~sl~el~~~~   70 (305)
T 2fp4_A            9 LYVDKNTKVICQGFTGKQGTFHSQQA-LEYGTNLVGGTTPGKGG-----------------KTHLGLPVFNTVKEAKEQT   70 (305)
T ss_dssp             GCCCTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTT-----------------CEETTEEEESSHHHHHHHH
T ss_pred             HHhCCCcEEEEECCCCCHHHHHHHHH-HHCCCcEEEEeCCCcCc-----------------ceECCeeeechHHHhhhcC
Confidence            45667889999 99 99999999997 67888844 45654311                 00123344578999988  


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCC-cEEEEcCCCccc-CHHHHHHHHHcC-Cce
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSRGPVI-DEVALVEHLKQN-PMF  292 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~g-a~lINvaRG~~v-d~~aL~~aL~~g-~i~  292 (342)
                      ..|++++++|. +.....+.+ .++   .| ..+|+.+-|-.. ++..+.+..++. .+.
T Consensus        71 ~vD~avI~vP~-~~~~~~~~e-~i~---~Gi~~iv~~t~G~~~~~~~~l~~~a~~~~gi~  125 (305)
T 2fp4_A           71 GATASVIYVPP-PFAAAAINE-AID---AEVPLVVCITEGIPQQDMVRVKHRLLRQGKTR  125 (305)
T ss_dssp             CCCEEEECCCH-HHHHHHHHH-HHH---TTCSEEEECCCCCCHHHHHHHHHHHTTCSSCE
T ss_pred             CCCEEEEecCH-HHHHHHHHH-HHH---CCCCEEEEECCCCChHHHHHHHHHHHhcCCcE
Confidence            89999999993 222333332 222   23 244667666432 334788888776 554

>3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A*

Probab=95.59  E-value=0.015  Score=50.35  Aligned_cols=101  Identities=11%  Similarity=0.214  Sum_probs=61.5

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhcCCEEE
Q 019387          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .|+|.|.| -|.||+.+++.|++.-|.+|.+.+++++...+....      ...+...  .......+++++++++|+|+
T Consensus         5 mk~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~------~~~~~~~~~~D~~d~~~~~~~~~~~d~vv   78 (221)
T 3r6d_A            5 YXYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEII------DHERVTVIEGSFQNPGXLEQAVTNAEVVF   78 (221)
T ss_dssp             CSEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHH------TSTTEEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred             EEEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhcc------CCCceEEEECCCCCHHHHHHHHcCCCEEE
Confidence            36799999 699999999998536799999999886512111100      0000000  01112346678889999999


Q ss_pred             EcCCCCcccccccCHHHHhcCCC-C-cEEEEcCCCc
Q 019387          242 LHPVLDKTTYHLINKERLATMKK-E-AILVNCSRGP  275 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~-g-a~lINvaRG~  275 (342)
                      .+.....-  .  ....+..|++ | ..||+++-..
T Consensus        79 ~~ag~~n~--~--~~~~~~~~~~~~~~~iv~iSs~~  110 (221)
T 3r6d_A           79 VGAMESGS--D--MASIVKALSRXNIRRVIGVSMAG  110 (221)
T ss_dssp             ESCCCCHH--H--HHHHHHHHHHTTCCEEEEEEETT
T ss_pred             EcCCCCCh--h--HHHHHHHHHhcCCCeEEEEeece
Confidence            98864311  1  4555555642 2 3688876443

>2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043}

Probab=95.58  E-value=0.024  Score=52.84  Aligned_cols=69  Identities=14%  Similarity=0.186  Sum_probs=47.5

Q ss_pred             CeEEEEecCHHHH-HHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEE
Q 019387          166 QTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~-~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~  241 (342)
                      .+|||||+|.+|. .+++.+ +.-++++. ++|++++.. +.+.+.|       +    ....+.++++++.  +.|+|+
T Consensus         5 ~rvgiiG~G~~~~~~~~~~l-~~~~~~lvav~d~~~~~~-~~~a~~~-------~----~~~~~~~~~~ll~~~~~D~V~   71 (336)
T 2p2s_A            5 IRFAAIGLAHNHIYDMCQQL-IDAGAELAGVFESDSDNR-AKFTSLF-------P----SVPFAASAEQLITDASIDLIA   71 (336)
T ss_dssp             CEEEEECCSSTHHHHHHHHH-HHTTCEEEEEECSCTTSC-HHHHHHS-------T----TCCBCSCHHHHHTCTTCCEEE
T ss_pred             cEEEEECCChHHHHHhhhhh-cCCCcEEEEEeCCCHHHH-HHHHHhc-------C----CCcccCCHHHHhhCCCCCEEE
Confidence            4899999999996 677766 44588865 788876532 2222221       1    1123578999997  689999


Q ss_pred             EcCCCC
Q 019387          242 LHPVLD  247 (342)
Q Consensus       242 l~~pl~  247 (342)
                      +|+|..
T Consensus        72 i~tp~~   77 (336)
T 2p2s_A           72 CAVIPC   77 (336)
T ss_dssp             ECSCGG
T ss_pred             EeCChh
Confidence            999953

>3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1}

Probab=95.56  E-value=0.024  Score=55.99  Aligned_cols=98  Identities=15%  Similarity=0.248  Sum_probs=68.0

Q ss_pred             cccCCCeEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCH
Q 019387          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~L~gktvgIvG~G----------~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      ..+.|++|+|+|+-          .=...+++.| ...|++|.+|||.....                 ..  .....++
T Consensus       349 ~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L-~~~g~~V~~~DP~~~~~-----------------~~--~~~~~~~  408 (478)
T 3g79_A          349 KKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLC-LKAGASVMVHDPYVVNY-----------------PG--VEISDNL  408 (478)
T ss_dssp             CCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHH-HHHTCEEEEECSSCCCB-----------------TT--BCEESCH
T ss_pred             cCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHH-HHCCCEEEEECCCcccc-----------------cC--cceecCH
Confidence            36899999999974          2357888887 68899999999986410                 00  1124688


Q ss_pred             HHHhhcCCEEEEcCCCCcccccccCHH-HHhcCC-CCcEEEEcCCCcccCHHHH
Q 019387          231 DEVLREADVISLHPVLDKTTYHLINKE-RLATMK-KEAILVNCSRGPVIDEVAL  282 (342)
Q Consensus       231 ~~ll~~aDiV~l~~pl~~~t~~li~~~-~l~~mk-~ga~lINvaRG~~vd~~aL  282 (342)
                      ++.++++|.|+++++= ++-+. ++.+ ..+.|+ ++.+++|+ |+ ++|.+.+
T Consensus       409 ~~~~~~ad~vvi~t~~-~~f~~-~d~~~~~~~~~~~~~~i~D~-rn-~~~~~~~  458 (478)
T 3g79_A          409 EEVVRNADAIVVLAGH-SAYSS-LKADWAKKVSAKANPVIIDG-RN-VIEPDEF  458 (478)
T ss_dssp             HHHHTTCSEEEECSCC-HHHHS-CCHHHHHHHHCCSSCEEEES-SS-CSCHHHH
T ss_pred             HHHHhcCCEEEEecCC-HHHHh-hhHHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence            9999999999999862 33332 3433 445677 47899995 65 4565554

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.54  E-value=0.021  Score=53.54  Aligned_cols=94  Identities=15%  Similarity=0.156  Sum_probs=58.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh----h--c
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL----R--E  236 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll----~--~  236 (342)
                      .|++|.|+|.|.||...++. ++..|+ +|++.+++++.. + +...+       +....-.....++.+.+    .  .
T Consensus       166 ~g~~VlV~GaG~vG~~a~ql-a~~~Ga~~Vi~~~~~~~~~-~-~~~~l-------Ga~~vi~~~~~~~~~~v~~~t~g~g  235 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAG-ANHLGAGRIFAVGSRKHCC-D-IALEY-------GATDIINYKNGDIVEQILKATDGKG  235 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHH-HHTTTCSSEEEECCCHHHH-H-HHHHH-------TCCEEECGGGSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCcEEEEECCCHHHH-H-HHHHh-------CCceEEcCCCcCHHHHHHHHcCCCC
Confidence            48899999999999999998 589999 899999876532 1 11111       11111000112333222    1  4


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .|+|+.+....+     .-...++.+++|..++.++
T Consensus       236 ~D~v~d~~g~~~-----~~~~~~~~l~~~G~~v~~G  266 (352)
T 3fpc_A          236 VDKVVIAGGDVH-----TFAQAVKMIKPGSDIGNVN  266 (352)
T ss_dssp             EEEEEECSSCTT-----HHHHHHHHEEEEEEEEECC
T ss_pred             CCEEEECCCChH-----HHHHHHHHHhcCCEEEEec
Confidence            789988876421     1245567777777777765

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=95.50  E-value=0.025  Score=52.98  Aligned_cols=95  Identities=14%  Similarity=0.160  Sum_probs=62.3

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC-ccccccCCHHHHhh-----c
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLR-----E  236 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ll~-----~  236 (342)
                      .|++|.|+|. |.||+.+++.+ +..|++|++.+++++.. +. ...+       +... .......++.+.+.     .
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~V~~~~~~~~~~-~~-~~~~-------g~~~~~d~~~~~~~~~~~~~~~~~~  238 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYA-KAMGYRVLGIDGGEGKE-EL-FRSI-------GGEVFIDFTKEKDIVGAVLKATDGG  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEECSTTHH-HH-HHHT-------TCCEEEETTTCSCHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCcEEEEcCCHHHH-HH-HHHc-------CCceEEecCccHhHHHHHHHHhCCC
Confidence            4789999999 89999999985 78999999999876543 11 1111       1110 01111234544443     4


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+|+.+....+     .-...+..|+++..+|+++.
T Consensus       239 ~D~vi~~~g~~~-----~~~~~~~~l~~~G~iv~~g~  270 (347)
T 2hcy_A          239 AHGVINVSVSEA-----AIEASTRYVRANGTTVLVGM  270 (347)
T ss_dssp             EEEEEECSSCHH-----HHHHHTTSEEEEEEEEECCC
T ss_pred             CCEEEECCCcHH-----HHHHHHHHHhcCCEEEEEeC
Confidence            799998876311     12456788899999999874

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=95.50  E-value=0.035  Score=52.66  Aligned_cols=95  Identities=18%  Similarity=0.147  Sum_probs=61.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccc-cCCHHHHhh-----
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~~ll~-----  235 (342)
                      .|++|.|+|.|.||...++. ++.+|+ +|++.++++++..  +...+       +.... .... ..++.+.+.     
T Consensus       193 ~g~~VlV~GaG~vG~~a~q~-a~~~Ga~~Vi~~~~~~~~~~--~a~~l-------Ga~~vi~~~~~~~~~~~~i~~~~~g  262 (378)
T 3uko_A          193 PGSNVAIFGLGTVGLAVAEG-AKTAGASRIIGIDIDSKKYE--TAKKF-------GVNEFVNPKDHDKPIQEVIVDLTDG  262 (378)
T ss_dssp             TTCCEEEECCSHHHHHHHHH-HHHHTCSCEEEECSCTTHHH--HHHTT-------TCCEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEcCCHHHHH--HHHHc-------CCcEEEccccCchhHHHHHHHhcCC
Confidence            58899999999999999998 589999 8999998775431  11111       21111 1110 134444333     


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCC-cEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~g-a~lINvaR  273 (342)
                      ..|+|+-|... ++    .-...++.+++| ..++.++-
T Consensus       263 g~D~vid~~g~-~~----~~~~~~~~l~~g~G~iv~~G~  296 (378)
T 3uko_A          263 GVDYSFECIGN-VS----VMRAALECCHKGWGTSVIVGV  296 (378)
T ss_dssp             CBSEEEECSCC-HH----HHHHHHHTBCTTTCEEEECSC
T ss_pred             CCCEEEECCCC-HH----HHHHHHHHhhccCCEEEEEcc
Confidence            48999998863 11    124567889986 88888874

>2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus}

Probab=95.46  E-value=0.12  Score=50.19  Aligned_cols=117  Identities=17%  Similarity=0.201  Sum_probs=66.6

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCc--------------hhHHHHHHhhhhhhhhccCCCCcccc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ--------------ATRLEKFVTAYGQFLKANGEQPVTWK  225 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~  225 (342)
                      .++.|++|.|.|+|++|+.+|+.| ...|++|++ .|.++              ...+....+..+.+   .+...  ..
T Consensus       208 ~~l~g~~vaVqG~GnVG~~~a~~L-~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i---~~~~~--a~  281 (421)
T 2yfq_A          208 IKMEDAKIAVQGFGNVGTFTVKNI-ERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTL---IGFPG--AE  281 (421)
T ss_dssp             CCGGGSCEEEECCSHHHHHHHHHH-HHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred             CCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCc---ccCCC--ce
Confidence            468899999999999999999997 689999994 55551              01122221111100   00000  00


Q ss_pred             ccCCHHHHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          226 RASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       226 ~~~~l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      . .+-++++ ..||+++-|.+     .+.|+.+....++ ..+++-.+-+++- .+ -.+.|++..+.
T Consensus       282 ~-i~~~~~~~~~~DIliP~A~-----~n~i~~~~A~~l~-ak~VvEgAN~P~t-~e-a~~il~~~GI~  340 (421)
T 2yfq_A          282 R-ITDEEFWTKEYDIIVPAAL-----ENVITGERAKTIN-AKLVCEAANGPTT-PE-GDKVLTERGIN  340 (421)
T ss_dssp             --------------CEEECSC-----SSCSCHHHHTTCC-CSEEECCSSSCSC-HH-HHHHHHHHTCE
T ss_pred             E-eCccchhcCCccEEEEcCC-----cCcCCcccHHHcC-CeEEEeCCccccC-HH-HHHHHHHCCCE
Confidence            1 1122332 36999998864     4678888888884 6788888999864 33 33555554444

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=95.43  E-value=0.019  Score=54.09  Aligned_cols=94  Identities=15%  Similarity=0.145  Sum_probs=62.2

Q ss_pred             CCCeEEEE-ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-----cC
Q 019387          164 KGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvgIv-G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-----~a  237 (342)
                      .|++|.|. |.|.||..+++.+ +..|++|++.+++++.....  ..+       +....-.....++.+.+.     ..
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~--~~l-------Ga~~~~~~~~~~~~~~~~~~~~~g~  236 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLA-RAFGAEVYATAGSTGKCEAC--ERL-------GAKRGINYRSEDFAAVIKAETGQGV  236 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHHHHH--HHH-------TCSEEEETTTSCHHHHHHHHHSSCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHH--Hhc-------CCCEEEeCCchHHHHHHHHHhCCCc
Confidence            58899999 6899999999985 89999999999877543211  111       111110001123333332     48


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+++.|....      .-...+..++++..++.++-
T Consensus       237 Dvvid~~g~~------~~~~~~~~l~~~G~iv~~g~  266 (353)
T 4dup_A          237 DIILDMIGAA------YFERNIASLAKDGCLSIIAF  266 (353)
T ss_dssp             EEEEESCCGG------GHHHHHHTEEEEEEEEECCC
T ss_pred             eEEEECCCHH------HHHHHHHHhccCCEEEEEEe
Confidence            9999888631      23567888999999999873

>1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1

Probab=95.43  E-value=0.026  Score=53.11  Aligned_cols=81  Identities=17%  Similarity=0.147  Sum_probs=44.5

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHh----hhhhhhhcc-CCCCccccccCCHHHHhhcCCEE
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVT----AYGQFLKAN-GEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      +|||+|+|.||+.+++.|.+.-++++.+ .|+.+.........    .|+.+.... ...........+.++++.++|+|
T Consensus         3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV   82 (337)
T 1cf2_P            3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV   82 (337)
T ss_dssp             EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE
T ss_pred             EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEE
Confidence            7999999999999999875435788865 45543221111000    000000000 00000000112567788899999


Q ss_pred             EEcCCCC
Q 019387          241 SLHPVLD  247 (342)
Q Consensus       241 ~l~~pl~  247 (342)
                      +.|+|..
T Consensus        83 ~~atp~~   89 (337)
T 1cf2_P           83 IDCTPEG   89 (337)
T ss_dssp             EECCSTT
T ss_pred             EECCCch
Confidence            9999853

>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}

Probab=95.43  E-value=0.024  Score=55.37  Aligned_cols=118  Identities=18%  Similarity=0.132  Sum_probs=71.5

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh--HHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc-CC
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT--RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-AD  238 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-aD  238 (342)
                      ++.||+|.|||+|..|.++|+.| ...|.+|.++|.....  .....       +...+..   +..-...++++.+ +|
T Consensus         6 ~~~~k~v~viG~G~sG~s~A~~l-~~~G~~V~~~D~~~~~~~~~~~~-------L~~~gi~---~~~g~~~~~~~~~~~d   74 (451)
T 3lk7_A            6 TFENKKVLVLGLARSGEAAARLL-AKLGAIVTVNDGKPFDENPTAQS-------LLEEGIK---VVCGSHPLELLDEDFC   74 (451)
T ss_dssp             TTTTCEEEEECCTTTHHHHHHHH-HHTTCEEEEEESSCGGGCHHHHH-------HHHTTCE---EEESCCCGGGGGSCEE
T ss_pred             hcCCCEEEEEeeCHHHHHHHHHH-HhCCCEEEEEeCCcccCChHHHH-------HHhCCCE---EEECCChHHhhcCCCC
Confidence            46799999999999999999997 6899999999986531  11111       1111211   1111122345566 89


Q ss_pred             EEEEcCCCCccc----------ccccCHH-HHhc-CCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          239 VISLHPVLDKTT----------YHLINKE-RLAT-MKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       239 iV~l~~pl~~~t----------~~li~~~-~l~~-mk~ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      +|+...-..+++          ..++++. .+.. ++...+-|-=+.|..-...-+...|+...
T Consensus        75 ~vv~spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g  138 (451)
T 3lk7_A           75 YMIKNPGIPYNNPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGG  138 (451)
T ss_dssp             EEEECTTSCTTSHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTT
T ss_pred             EEEECCcCCCCChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcC
Confidence            998864332221          1244443 3333 34344555557888887777777776543

>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*

Probab=95.42  E-value=0.024  Score=52.54  Aligned_cols=67  Identities=10%  Similarity=0.051  Sum_probs=47.1

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh---------
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll---------  234 (342)
                      .++||||+ |.||+..++.+ +..+.++. ++|++++..  ...+.+           .....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~~~~~-----------~~~~~~~~~~~ll~~~~~l~~~   69 (312)
T 3o9z_A            4 TRFALTGLAGYIAPRHLKAI-KEVGGVLVASLDPATNVG--LVDSFF-----------PEAEFFTEPEAFEAYLEDLRDR   69 (312)
T ss_dssp             CEEEEECTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GGGGTC-----------TTCEEESCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCChHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HHHhhC-----------CCCceeCCHHHHHHHhhhhccc
Confidence            58999999 68999999987 56688866 578876531  100000           1123457888887         


Q ss_pred             -hcCCEEEEcCCC
Q 019387          235 -READVISLHPVL  246 (342)
Q Consensus       235 -~~aDiV~l~~pl  246 (342)
                       .+.|+|++|+|.
T Consensus        70 ~~~vD~V~I~tP~   82 (312)
T 3o9z_A           70 GEGVDYLSIASPN   82 (312)
T ss_dssp             TCCCSEEEECSCG
T ss_pred             CCCCcEEEECCCc
Confidence             578999999994

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=95.41  E-value=0.022  Score=52.99  Aligned_cols=97  Identities=19%  Similarity=0.119  Sum_probs=62.6

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-----cC
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-----~a  237 (342)
                      .|++|.|.|. |.||+.+++.+ +..|++|++.+++++.. +.....+       +....-.....++.+.+.     ..
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~~~~~~~-------g~~~~~~~~~~~~~~~~~~~~~~~~  219 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAGGAEKC-RFLVEEL-------GFDGAIDYKNEDLAAGLKRECPKGI  219 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHHTT-------CCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHc-------CCCEEEECCCHHHHHHHHHhcCCCc
Confidence            4889999999 99999999985 79999999999876542 2110111       111100001123333332     47


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      |+|+.|...  +    .-...+..++++..+|.++-..
T Consensus       220 d~vi~~~g~--~----~~~~~~~~l~~~G~iv~~G~~~  251 (336)
T 4b7c_A          220 DVFFDNVGG--E----ILDTVLTRIAFKARIVLCGAIS  251 (336)
T ss_dssp             EEEEESSCH--H----HHHHHHTTEEEEEEEEECCCGG
T ss_pred             eEEEECCCc--c----hHHHHHHHHhhCCEEEEEeecc
Confidence            999888752  1    2356778899999999987543

>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*

Probab=95.40  E-value=0.037  Score=51.80  Aligned_cols=107  Identities=19%  Similarity=0.206  Sum_probs=59.7

Q ss_pred             CCeEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      ..+|+|+|.|.+|.+++..|+. .+.-++..+|...+. .+.......... ... .+..+.  .+..+.+++||+|+++
T Consensus         9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~-~~g~~~dl~~~~-~~~-~~~~i~--~~~~~a~~~aDvVii~   83 (326)
T 2zqz_A            9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDK-TKGDAIDLSNAL-PFT-SPKKIY--SAEYSDAKDADLVVIT   83 (326)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHH-HHHHHHHHHTTG-GGS-CCCEEE--ECCGGGGGGCSEEEEC
T ss_pred             CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchH-hHHHHHHHHHHH-Hhc-CCeEEE--ECCHHHhCCCCEEEEc
Confidence            3689999999999999987642 333489999997543 222111110000 000 111121  1335668999999999


Q ss_pred             CCCCcccccc-------cCH-------HHHhcCCCCcEEEEcCCCcccCH
Q 019387          244 PVLDKTTYHL-------INK-------ERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       244 ~pl~~~t~~l-------i~~-------~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      .+.. ...+.       .|.       +.+....|++.++++  ...+|.
T Consensus        84 ag~~-~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~  130 (326)
T 2zqz_A           84 AGAP-QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA--ANPVDI  130 (326)
T ss_dssp             CCCC------CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHHH
T ss_pred             CCCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--CCcHHH
Confidence            8653 32222       111       222333688999998  445544

>1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1

Probab=95.39  E-value=0.01  Score=54.40  Aligned_cols=40  Identities=18%  Similarity=0.172  Sum_probs=35.8

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      ...+.|++|.|||.|.+|...++.| ...|++|+++++...
T Consensus         8 ~~~l~~k~VLVVGgG~va~rka~~L-l~~Ga~VtViap~~~   47 (274)
T 1kyq_A            8 AHQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLH   47 (274)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEEC
T ss_pred             EEEcCCCEEEEECCcHHHHHHHHHH-HhCCCEEEEEcCCCC
Confidence            3568999999999999999999998 689999999998764

>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis}

Probab=95.39  E-value=0.033  Score=52.61  Aligned_cols=113  Identities=21%  Similarity=0.281  Sum_probs=63.4

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      +.+++|+|+|. |.+|+.+|..++ .+|  -+|..+|..... .+.....    +..............+..+.+++||+
T Consensus         6 ~~~~KV~ViGaaG~VG~~~a~~l~-~~g~~~evvLiDi~~~k-~~g~a~D----L~~~~~~~~~i~~t~d~~~al~dADv   79 (343)
T 3fi9_A            6 LTEEKLTIVGAAGMIGSNMAQTAA-MMRLTPNLCLYDPFAVG-LEGVAEE----IRHCGFEGLNLTFTSDIKEALTDAKY   79 (343)
T ss_dssp             SCSSEEEEETTTSHHHHHHHHHHH-HTTCCSCEEEECSCHHH-HHHHHHH----HHHHCCTTCCCEEESCHHHHHTTEEE
T ss_pred             cCCCEEEEECCCChHHHHHHHHHH-hcCCCCEEEEEeCCchh-HHHHHHh----hhhCcCCCCceEEcCCHHHHhCCCCE
Confidence            34679999998 999999997763 455  489999987542 1211000    11000011122233578888999999


Q ss_pred             EEEcCCCCcccccc-----c--CH-------HHHhcCCCCc-EEEEcCCCcccCHHHHHH
Q 019387          240 ISLHPVLDKTTYHL-----I--NK-------ERLATMKKEA-ILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       240 V~l~~pl~~~t~~l-----i--~~-------~~l~~mk~ga-~lINvaRG~~vd~~aL~~  284 (342)
                      |+++... ++..+.     +  |.       +.+..-.|++ ++++++  ..+|.-..+-
T Consensus        80 VvitaG~-p~kpG~~R~dLl~~N~~I~~~i~~~i~~~~p~a~~vlvvs--NPvd~~t~i~  136 (343)
T 3fi9_A           80 IVSSGGA-PRKEGMTREDLLKGNAEIAAQLGKDIKSYCPDCKHVIIIF--NPADITGLVT  136 (343)
T ss_dssp             EEECCC--------CHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEECS--SSHHHHHHHH
T ss_pred             EEEccCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEec--CchHHHHHHH
Confidence            9998642 332222     1  11       1233334677 488886  5566554443

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.38  E-value=0.031  Score=53.33  Aligned_cols=100  Identities=20%  Similarity=0.125  Sum_probs=61.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH----Hhh--c
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE----VLR--E  236 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----ll~--~  236 (342)
                      .|++|.|+|.|.||...++. ++.+|+ +|++.++++++. +. ...+       +.........+++.+    +..  .
T Consensus       185 ~g~~VlV~GaG~vG~~aiql-Ak~~Ga~~Vi~~~~~~~~~-~~-a~~l-------Ga~~i~~~~~~~~~~~v~~~t~g~g  254 (398)
T 1kol_A          185 PGSTVYVAGAGPVGLAAAAS-ARLLGAAVVIVGDLNPARL-AH-AKAQ-------GFEIADLSLDTPLHEQIAALLGEPE  254 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEEESCHHHH-HH-HHHT-------TCEEEETTSSSCHHHHHHHHHSSSC
T ss_pred             CCCEEEEECCcHHHHHHHHH-HHHCCCCeEEEEcCCHHHH-HH-HHHc-------CCcEEccCCcchHHHHHHHHhCCCC
Confidence            48899999999999999998 589999 799998876542 11 1111       211111111122332    222  4


Q ss_pred             CCEEEEcCCCCcccc----------cccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTY----------HLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~----------~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+|+-++.......          .-.-...++.+++|..++.++-
T Consensus       255 ~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~  301 (398)
T 1kol_A          255 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL  301 (398)
T ss_dssp             EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred             CCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEecc
Confidence            799999886431000          0012456788899988888763

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=95.38  E-value=0.021  Score=53.13  Aligned_cols=94  Identities=15%  Similarity=0.159  Sum_probs=60.5

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh------hc
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll------~~  236 (342)
                      .|++|.|+| .|.||..+++.+ +..|++|++.++++++. + +...+       +....-.....++.+.+      ..
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~-~~~~~-------ga~~~~~~~~~~~~~~~~~~~~~~g  217 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVASTDEKL-K-IAKEY-------GAEYLINASKEDILRQVLKFTNGKG  217 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEESSHHHH-H-HHHHT-------TCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeCCHHHH-H-HHHHc-------CCcEEEeCCCchHHHHHHHHhCCCC
Confidence            588999999 899999999985 89999999999876543 2 11111       11111000112333222      24


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+|+.|...  +    .-...++.+++|..+|.++.
T Consensus       218 ~D~vid~~g~--~----~~~~~~~~l~~~G~iv~~G~  248 (334)
T 3qwb_A          218 VDASFDSVGK--D----TFEISLAALKRKGVFVSFGN  248 (334)
T ss_dssp             EEEEEECCGG--G----GHHHHHHHEEEEEEEEECCC
T ss_pred             ceEEEECCCh--H----HHHHHHHHhccCCEEEEEcC
Confidence            7899888763  1    23456788888888888864

>3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus}

Probab=95.36  E-value=0.33  Score=46.91  Aligned_cols=114  Identities=18%  Similarity=0.161  Sum_probs=70.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCC---------chhHHHHHHhhhhhhhhccCCCCccccccCCH
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY---------QATRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .++.|++|.|.|+|++|+.+|+.| ...|++|+ +.|.+         ....+....+..+.      ...... ...++
T Consensus       214 ~~l~gk~vaVqG~GnVG~~~a~~L-~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~------v~~~~~-~~~e~  285 (419)
T 3aoe_E          214 LDLRGARVVVQGLGQVGAAVALHA-ERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGS------LPRLDL-APEEV  285 (419)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSS------CSCCCB-CTTTG
T ss_pred             CCccCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCC------cceeec-cchhh
Confidence            468999999999999999999997 57899999 45552         11122222111110      000000 01122


Q ss_pred             HHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       231 ~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                        +-..||+++-|..     .+.|+.+.-..++- .+++.-+-+++- .+| .+.|.+..|.
T Consensus       286 --~~~~~DVliP~A~-----~n~i~~~~A~~l~a-k~V~EgAN~p~t-~~A-~~~L~~~Gi~  337 (419)
T 3aoe_E          286 --FGLEAEVLVLAAR-----EGALDGDRARQVQA-QAVVEVANFGLN-PEA-EAYLLGKGAL  337 (419)
T ss_dssp             --GGSSCSEEEECSC-----TTCBCHHHHTTCCC-SEEEECSTTCBC-HHH-HHHHHHHTCE
T ss_pred             --hccCceEEEeccc-----ccccccchHhhCCc-eEEEECCCCcCC-HHH-HHHHHHCCCE
Confidence              2247999998854     46777887777754 488999988864 444 3556555554

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=95.32  E-value=0.021  Score=53.75  Aligned_cols=45  Identities=24%  Similarity=0.352  Sum_probs=33.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYG  211 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~  211 (342)
                      -+|||.|||+||+.++|.+ ..+|++|++ +|+......-.+.-.|+
T Consensus         8 ~kvgInGFGRIGrlv~R~~-~~~~veivainDp~~d~~~~a~l~~yD   53 (346)
T 3h9e_O            8 LTVGINGFGRIGRLVLRAC-MEKGVKVVAVNDPFIDPEYMVYMFKYD   53 (346)
T ss_dssp             CEEEEECCSHHHHHHHHHH-HHTTCEEEEEECTTCCHHHHHHHHHCC
T ss_pred             eEEEEECCChHHHHHHHHH-HhCCCEEEEEeCCCCChhHhccccccc
Confidence            4899999999999999985 688999887 67765443334444444

>3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum}

Probab=95.31  E-value=0.091  Score=51.30  Aligned_cols=89  Identities=17%  Similarity=0.222  Sum_probs=60.5

Q ss_pred             ccCCCeEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHH
Q 019387          162 LLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (342)
Q Consensus       162 ~L~gktvgIvG~G----------~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (342)
                      .+.|++|+|+|+.          .=...+++.| +..|++|.+|||.........   ++          .......+++
T Consensus       330 ~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L-~~~Ga~V~~~DP~~~~~~~~~---~~----------~~~~~~~~~~  395 (444)
T 3vtf_A          330 GLRGRHVGVLGLAFKPNTDDVRESRGVEVARLL-LERGARVYVHDPMAMEKARAV---LG----------DSVTYVEDPQ  395 (444)
T ss_dssp             CCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECSSTHHHHHHH---HG----------GGSEECSCHH
T ss_pred             ccCCCEEEEEeeecCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChHHHHh---cC----------CCceecCCHH
Confidence            5889999999985          2267888987 689999999999864322111   10          1123456899


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       232 ~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      ++++++|.|+++.+= ++-+.+ +      + ++.+++++ |+
T Consensus       396 ~a~~~aDavvi~t~h-~ef~~l-d------~-~~~vv~D~-Rn  428 (444)
T 3vtf_A          396 ALLDQVEGVIIATAW-PQYEGL-D------Y-RGKVVVDG-RY  428 (444)
T ss_dssp             HHHHHCSEEEECSCC-GGGGGS-C------C-TTCEEEES-SC
T ss_pred             HHHhCCCEEEEccCC-HHHhCC-C------c-CCCEEEEC-CC
Confidence            999999999999763 222211 1      2 36788885 54

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=95.30  E-value=0.021  Score=52.95  Aligned_cols=94  Identities=13%  Similarity=0.083  Sum_probs=61.4

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh------hc
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll------~~  236 (342)
                      .|++|.|.| .|.||..+++.+ +..|++|++.++++++.. . ...+       +....-.....++.+.+      ..
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~-~-~~~~-------Ga~~~~~~~~~~~~~~~~~~~~~~g  209 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWA-KALGAKLIGTVSSPEKAA-H-AKAL-------GAWETIDYSHEDVAKRVLELTDGKK  209 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSHHHHH-H-HHHH-------TCSEEEETTTSCHHHHHHHHTTTCC
T ss_pred             CCCEEEEEcCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHH-H-HHHc-------CCCEEEeCCCccHHHHHHHHhCCCC
Confidence            488999999 899999999985 889999999998765431 1 1111       11110000112333222      25


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+|+.|...  +    .-...++.+++|..+|.++.
T Consensus       210 ~Dvvid~~g~--~----~~~~~~~~l~~~G~iv~~g~  240 (325)
T 3jyn_A          210 CPVVYDGVGQ--D----TWLTSLDSVAPRGLVVSFGN  240 (325)
T ss_dssp             EEEEEESSCG--G----GHHHHHTTEEEEEEEEECCC
T ss_pred             ceEEEECCCh--H----HHHHHHHHhcCCCEEEEEec
Confidence            8999988763  1    23467888999999999874

>4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A

Probab=95.29  E-value=0.018  Score=55.70  Aligned_cols=39  Identities=21%  Similarity=0.452  Sum_probs=34.7

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      -+.|++|+|+|-|.+|+.+++.+ +.+|.+|+++|+++..
T Consensus        32 ~~~~~~IlIlG~G~lg~~~~~aa-~~lG~~v~v~d~~~~~   70 (419)
T 4e4t_A           32 ILPGAWLGMVGGGQLGRMFCFAA-QSMGYRVAVLDPDPAS   70 (419)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCTTC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEECCCCcC
Confidence            46799999999999999999995 8999999999987653

>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix}

Probab=95.29  E-value=0.068  Score=49.59  Aligned_cols=106  Identities=18%  Similarity=0.282  Sum_probs=59.4

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|+|+|.|.||..+|..++. -|. +|..+|...+.. +.............. ....+....+. +.+++||+|+++.+
T Consensus         1 KI~IiGaG~vG~~~a~~l~~-~~l~el~L~Di~~~~~-~g~~~dl~~~~~~~~-~~~~i~~t~d~-~a~~~aD~Vi~~ag   76 (308)
T 2d4a_B            1 MITILGAGKVGMATAVMLMM-RGYDDLLLIARTPGKP-QGEALDLAHAAAELG-VDIRISGSNSY-EDMRGSDIVLVTAG   76 (308)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-HTCSCEEEECSSTTHH-HHHHHHHHHHHHHHT-CCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred             CEEEECcCHHHHHHHHHHHh-CCCCEEEEEcCChhhH-HHHHHHHHHhhhhcC-CCeEEEECCCH-HHhCCCCEEEEeCC
Confidence            58999999999999987653 244 799999876432 221111100000000 11112222455 56899999999976


Q ss_pred             CCcccccc------------cCH--HHHhcCCCCcEEEEcCCCcccCH
Q 019387          246 LDKTTYHL------------INK--ERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       246 l~~~t~~l------------i~~--~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      .. ...++            +-+  +.+....|++.+|+++-  .+|.
T Consensus        77 ~~-~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tN--Pv~~  121 (308)
T 2d4a_B           77 IG-RKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTN--PVDA  121 (308)
T ss_dssp             CC-CCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS--SHHH
T ss_pred             CC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCC--chHH
Confidence            53 32332            110  12333358899999844  4443

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=95.28  E-value=0.027  Score=52.32  Aligned_cols=94  Identities=19%  Similarity=0.162  Sum_probs=62.0

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC-ccccccCCHHHHhh-----c
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSMDEVLR-----E  236 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~ll~-----~  236 (342)
                      .|++|.|.|. |.||+.+++.+ +..|++|++.+++.+.. +.. ..+       +... .......++.+.+.     .
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~-~~~G~~V~~~~~~~~~~-~~~-~~~-------g~~~~~d~~~~~~~~~~~~~~~~~~  214 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIA-KLKGCKVVGAAGSDEKI-AYL-KQI-------GFDAAFNYKTVNSLEEALKKASPDG  214 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHH-HHT-------TCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEecCCCcHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH-Hhc-------CCcEEEecCCHHHHHHHHHHHhCCC
Confidence            5889999998 99999999985 78999999999876432 211 111       1110 01111134444433     4


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+++.+...  .+    -...++.+++|..++.++-
T Consensus       215 ~d~vi~~~g~--~~----~~~~~~~l~~~G~~v~~g~  245 (333)
T 1v3u_A          215 YDCYFDNVGG--EF----LNTVLSQMKDFGKIAICGA  245 (333)
T ss_dssp             EEEEEESSCH--HH----HHHHHTTEEEEEEEEECCC
T ss_pred             CeEEEECCCh--HH----HHHHHHHHhcCCEEEEEec
Confidence            7999888752  11    3567788999999999874

>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1

Probab=95.28  E-value=0.049  Score=50.80  Aligned_cols=106  Identities=18%  Similarity=0.189  Sum_probs=59.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .+|+|+|.|.+|.+++..|+. ...-++..+|...+. .+.......... ... .+..+.  .+..+.+++||+|+++.
T Consensus         6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~-~~g~~~dl~~~~-~~~-~~~~v~--~~~~~a~~~aDvVii~a   80 (318)
T 1ez4_A            6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDR-TKGDALDLEDAQ-AFT-APKKIY--SGEYSDCKDADLVVITA   80 (318)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHH-HHHHHHHHHGGG-GGS-CCCEEE--ECCGGGGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchH-HHHHHHHHHHHH-Hhc-CCeEEE--ECCHHHhCCCCEEEECC
Confidence            589999999999999988743 233489999997542 222111110000 000 111121  13356689999999998


Q ss_pred             CCCcccccc-------cCH-------HHHhcCCCCcEEEEcCCCcccCH
Q 019387          245 VLDKTTYHL-------INK-------ERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       245 pl~~~t~~l-------i~~-------~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      +.. ...+.       .|.       +.+....|++.+++++  ..+|.
T Consensus        81 g~~-~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~  126 (318)
T 1ez4_A           81 GAP-QKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA--NPVDI  126 (318)
T ss_dssp             CC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHH
T ss_pred             CCC-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeC--CcHHH
Confidence            653 22221       111       2333446899999984  44444

>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A*

Probab=95.27  E-value=0.063  Score=50.22  Aligned_cols=105  Identities=16%  Similarity=0.274  Sum_probs=60.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ..++|+|+|.|.+|..+|..|+ .-|. +|..+|..++.......+ ......-.+ .+.......+. +.+++||+|++
T Consensus         6 ~~~kI~viGaG~vG~~~a~~l~-~~~~~~v~L~Di~~~~~~g~~~d-l~~~~~~~~-~~~~v~~t~d~-~a~~~aDiVIi   81 (324)
T 3gvi_A            6 ARNKIALIGSGMIGGTLAHLAG-LKELGDVVLFDIAEGTPQGKGLD-IAESSPVDG-FDAKFTGANDY-AAIEGADVVIV   81 (324)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHH-HTTCCEEEEECSSSSHHHHHHHH-HHHHHHHHT-CCCCEEEESSG-GGGTTCSEEEE
T ss_pred             cCCEEEEECCCHHHHHHHHHHH-hCCCCeEEEEeCCchhHHHHHHH-HhchhhhcC-CCCEEEEeCCH-HHHCCCCEEEE
Confidence            4679999999999999999874 4455 999999987532111111 000000000 11112222344 67899999999


Q ss_pred             cCCCCcccccc-----c--CH-------HHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDKTTYHL-----I--NK-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~~t~~l-----i--~~-------~~l~~mk~ga~lINvaR  273 (342)
                      +.+. +...++     +  |.       ..+....|++++++++-
T Consensus        82 aag~-p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtN  125 (324)
T 3gvi_A           82 TAGV-PRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITN  125 (324)
T ss_dssp             CCSC-CCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred             ccCc-CCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCC
Confidence            9753 322222     2  11       22333458899999984

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=95.26  E-value=0.026  Score=53.25  Aligned_cols=30  Identities=23%  Similarity=0.455  Sum_probs=24.1

Q ss_pred             eEEEEecCHHHHHHHHHHHhc--CCcEEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYD  196 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~a--fg~~V~~~d  196 (342)
                      +|||+|+|+||+.+.+.|...  -+++|.+.+
T Consensus         4 kVgI~G~G~IGr~v~r~l~~~~~~~~evvaIn   35 (339)
T 3b1j_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAIN   35 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSCCSEEEEEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence            799999999999999987433  358887654

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=95.24  E-value=0.016  Score=54.14  Aligned_cols=94  Identities=15%  Similarity=0.099  Sum_probs=60.3

Q ss_pred             CCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh------hc
Q 019387          164 KGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (342)
Q Consensus       164 ~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll------~~  236 (342)
                      .|++|.|+|.| .||..+++.+ +.+|++|++.+++.+.....  ..+       +....-.....++.+.+      ..
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~~~~~~~~~--~~l-------ga~~~~~~~~~~~~~~~~~~~~~~g  213 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLS-QILNFRLIAVTRNNKHTEEL--LRL-------GAAYVIDTSTAPLYETVMELTNGIG  213 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESSSTTHHHH--HHH-------TCSEEEETTTSCHHHHHHHHTTTSC
T ss_pred             CCCEEEEeCCccHHHHHHHHHH-HHcCCEEEEEeCCHHHHHHH--HhC-------CCcEEEeCCcccHHHHHHHHhCCCC
Confidence            58899999998 9999999985 88999999999876543111  111       11110000112333322      25


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+|+.|... +.+     ...+..+++|..++.++-
T Consensus       214 ~Dvvid~~g~-~~~-----~~~~~~l~~~G~iv~~G~  244 (340)
T 3gms_A          214 ADAAIDSIGG-PDG-----NELAFSLRPNGHFLTIGL  244 (340)
T ss_dssp             EEEEEESSCH-HHH-----HHHHHTEEEEEEEEECCC
T ss_pred             CcEEEECCCC-hhH-----HHHHHHhcCCCEEEEEee
Confidence            7999988763 221     345578899999999873

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=95.24  E-value=0.026  Score=54.05  Aligned_cols=31  Identities=23%  Similarity=0.409  Sum_probs=24.5

Q ss_pred             eEEEEecCHHHHHHHHHHHhc--CCcEEEEEcC
Q 019387          167 TVGVIGAGRIGSAYARMMVEG--FKMNLIYYDL  197 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~a--fg~~V~~~d~  197 (342)
                      +|||+|+|+||+.++|.|...  -+++|.+.+.
T Consensus         4 kVgInGfGrIGr~vlR~l~~~~~~~veIVaInd   36 (380)
T 2d2i_A            4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAINN   36 (380)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHhcCCCCCEEEEEEec
Confidence            799999999999999987432  3588876543

>2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A

Probab=95.24  E-value=0.092  Score=49.70  Aligned_cols=102  Identities=16%  Similarity=0.220  Sum_probs=58.0

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcCC------cEEEEEc-CCch-hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGFK------MNLIYYD-LYQA-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~afg------~~V~~~d-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~  236 (342)
                      .+|+|+| .|.+|+.+.++|. ..+      .++..+. ++.. +....   .+..+.   +.....+.. .+. +.+.+
T Consensus        10 ~kVaIvGATG~vG~~llr~L~-~~~~~~~~~~ei~~l~s~~~agk~~~~---~~~~l~---~~~~~~~~~-~~~-~~~~~   80 (352)
T 2nqt_A           10 TKVAVAGASGYAGGEILRLLL-GHPAYADGRLRIGALTAATSAGSTLGE---HHPHLT---PLAHRVVEP-TEA-AVLGG   80 (352)
T ss_dssp             EEEEEETTTSHHHHHHHHHHH-TCHHHHTTSEEEEEEEESSCTTSBGGG---TCTTCG---GGTTCBCEE-CCH-HHHTT
T ss_pred             CEEEEECCCCHHHHHHHHHHH-cCCCCCCccEEEEEEECCCcCCCchhh---hccccc---ccceeeecc-CCH-HHhcC
Confidence            5899999 9999999999974 544      5777653 2221 11110   000000   000111111 132 34568


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHH
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVAL  282 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL  282 (342)
                      +|+|++|+|..      ...+....++.|+.+|+.+-.--.+..+.
T Consensus        81 ~DvVf~alg~~------~s~~~~~~~~~G~~vIDlSa~~R~~~~~~  120 (352)
T 2nqt_A           81 HDAVFLALPHG------HSAVLAQQLSPETLIIDCGADFRLTDAAV  120 (352)
T ss_dssp             CSEEEECCTTS------CCHHHHHHSCTTSEEEECSSTTTCSCHHH
T ss_pred             CCEEEECCCCc------chHHHHHHHhCCCEEEEECCCccCCcchh
Confidence            99999999854      24555555567899999875444444343

>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}

Probab=95.24  E-value=0.029  Score=52.12  Aligned_cols=67  Identities=18%  Similarity=0.193  Sum_probs=46.9

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh---------
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---------  234 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll---------  234 (342)
                      .++||||+ |.||+..++.+ +..+.++. ++|+.++..  .+..         ..  .....+.++++++         
T Consensus         4 irvgiIG~gG~i~~~h~~~l-~~~~~~lvav~d~~~~~~--~~~~---------~~--~~~~~~~~~~~ll~~~~~l~~~   69 (318)
T 3oa2_A            4 KNFALIGAAGYIAPRHMRAI-KDTGNCLVSAYDINDSVG--IIDS---------IS--PQSEFFTEFEFFLDHASNLKRD   69 (318)
T ss_dssp             CEEEEETTTSSSHHHHHHHH-HHTTCEEEEEECSSCCCG--GGGG---------TC--TTCEEESSHHHHHHHHHHHTTS
T ss_pred             eEEEEECCCcHHHHHHHHHH-HhCCCEEEEEEcCCHHHH--HHHh---------hC--CCCcEECCHHHHHHhhhhhhhc
Confidence            58999999 78999999987 56688766 578876531  1100         00  1123457888887         


Q ss_pred             --hcCCEEEEcCCC
Q 019387          235 --READVISLHPVL  246 (342)
Q Consensus       235 --~~aDiV~l~~pl  246 (342)
                        .+.|+|++|.|.
T Consensus        70 ~~~~vD~V~I~tP~   83 (318)
T 3oa2_A           70 SATALDYVSICSPN   83 (318)
T ss_dssp             TTTSCCEEEECSCG
T ss_pred             cCCCCcEEEECCCc
Confidence              568999999994

>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}

Probab=95.23  E-value=0.026  Score=53.20  Aligned_cols=71  Identities=13%  Similarity=0.166  Sum_probs=46.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHh--c-----CCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc-
Q 019387          166 QTVGVIGAGRIGSAYARMMVE--G-----FKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-  236 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~--a-----fg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-  236 (342)
                      -+|||||+|.||+.-++.+.+  .     .+++|. ++|++++. .+.+.+.|       +..    ..+.++++++.. 
T Consensus         7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~-a~~~a~~~-------g~~----~~~~d~~~ll~~~   74 (390)
T 4h3v_A            7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEA-VRAAAGKL-------GWS----TTETDWRTLLERD   74 (390)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHH-HHHHHHHH-------TCS----EEESCHHHHTTCT
T ss_pred             CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHH-HHHHHHHc-------CCC----cccCCHHHHhcCC
Confidence            389999999999987765421  1     134665 57887653 33333322       111    235789999964 


Q ss_pred             -CCEEEEcCCCCc
Q 019387          237 -ADVISLHPVLDK  248 (342)
Q Consensus       237 -aDiV~l~~pl~~  248 (342)
                       -|+|++|+|..-
T Consensus        75 ~iDaV~I~tP~~~   87 (390)
T 4h3v_A           75 DVQLVDVCTPGDS   87 (390)
T ss_dssp             TCSEEEECSCGGG
T ss_pred             CCCEEEEeCChHH
Confidence             789999999543

>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}

Probab=95.21  E-value=0.047  Score=50.93  Aligned_cols=115  Identities=15%  Similarity=0.081  Sum_probs=69.0

Q ss_pred             CCeEEEEecCHHHHH-HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCEEEE
Q 019387          165 GQTVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISL  242 (342)
Q Consensus       165 gktvgIvG~G~IG~~-vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV~l  242 (342)
                      .++|.|||.|.+|.+ +|+.| +..|.+|.++|...........+       ..+..   +..-.+.+++. .++|+|+.
T Consensus         4 ~~~i~~iGiGg~Gms~~A~~L-~~~G~~V~~~D~~~~~~~~~~L~-------~~gi~---v~~g~~~~~l~~~~~d~vV~   72 (326)
T 3eag_A            4 MKHIHIIGIGGTFMGGLAAIA-KEAGFEVSGCDAKMYPPMSTQLE-------ALGID---VYEGFDAAQLDEFKADVYVI   72 (326)
T ss_dssp             CCEEEEESCCSHHHHHHHHHH-HHTTCEEEEEESSCCTTHHHHHH-------HTTCE---EEESCCGGGGGSCCCSEEEE
T ss_pred             CcEEEEEEECHHHHHHHHHHH-HhCCCEEEEEcCCCCcHHHHHHH-------hCCCE---EECCCCHHHcCCCCCCEEEE
Confidence            578999999999996 88887 68999999999875422111111       11211   11112234444 47999988


Q ss_pred             cCCCCccc----------ccccCHH-HHhc--CCC-CcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          243 HPVLDKTT----------YHLINKE-RLAT--MKK-EAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       243 ~~pl~~~t----------~~li~~~-~l~~--mk~-ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      ..-..+++          ..++++. .|..  +++ ..+-|-=+.|..-...-+.+.|+...
T Consensus        73 Spgi~~~~p~~~~a~~~gi~v~~~~e~~~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~~g  134 (326)
T 3eag_A           73 GNVAKRGMDVVEAILNLGLPYISGPQWLSENVLHHHWVLGVAGTHGKTTTASMLAWVLEYAG  134 (326)
T ss_dssp             CTTCCTTCHHHHHHHHTTCCEEEHHHHHHHHTGGGSEEEEEESSSCHHHHHHHHHHHHHHTT
T ss_pred             CCCcCCCCHHHHHHHHcCCcEEeHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHHcC
Confidence            64332222          1244443 3332  332 34566667899888887778887643

>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ...

Probab=95.20  E-value=0.067  Score=50.23  Aligned_cols=107  Identities=12%  Similarity=0.152  Sum_probs=61.3

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      ....++|+|+|.|.||..+|..|+ ..|.  ++..+|..... .+........-. .... ........+.+ .+++||+
T Consensus        16 ~~~~~kV~ViGaG~vG~~~a~~l~-~~~~~~el~L~Di~~~~-~~g~a~DL~~~~-~~~~-~~~i~~~~d~~-~~~~aDi   90 (331)
T 4aj2_A           16 QVPQNKITVVGVGAVGMACAISIL-MKDLADELALVDVIEDK-LKGEMMDLQHGS-LFLK-TPKIVSSKDYS-VTANSKL   90 (331)
T ss_dssp             -CCSSEEEEECCSHHHHHHHHHHH-HTTCCSEEEEECSCHHH-HHHHHHHHHHTG-GGCS-CCEEEECSSGG-GGTTEEE
T ss_pred             cCCCCEEEEECCCHHHHHHHHHHH-hCCCCceEEEEeCChHH-HHHHHHhhhhhh-hccC-CCeEEEcCCHH-HhCCCCE
Confidence            346789999999999999998765 3354  89999987542 222111110000 0000 11111224555 4899999


Q ss_pred             EEEcCCCCc---ccc-cccCH---------HHHhcCCCCcEEEEcCC
Q 019387          240 ISLHPVLDK---TTY-HLINK---------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       240 V~l~~pl~~---~t~-~li~~---------~~l~~mk~ga~lINvaR  273 (342)
                      |+++.....   +|| .++..         +.+....|++++++++-
T Consensus        91 Vvi~aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvtN  137 (331)
T 4aj2_A           91 VIITAGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVSN  137 (331)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             EEEccCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC
Confidence            999864321   222 22221         23444578999999984

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=95.16  E-value=0.091  Score=49.34  Aligned_cols=97  Identities=13%  Similarity=0.014  Sum_probs=60.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc--ccCCHHHHh------
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEVL------  234 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~ll------  234 (342)
                      .|++|.|+|.|.+|...++. ++.+|++ |++.+.++++....  ..+.     .........  ...++.+.+      
T Consensus       179 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~~~a--~~l~-----~~~~~~~~~~~~~~~~~~~v~~~t~g  250 (363)
T 3m6i_A          179 LGDPVLICGAGPIGLITMLC-AKAAGACPLVITDIDEGRLKFA--KEIC-----PEVVTHKVERLSAEESAKKIVESFGG  250 (363)
T ss_dssp             TTCCEEEECCSHHHHHHHHH-HHHTTCCSEEEEESCHHHHHHH--HHHC-----TTCEEEECCSCCHHHHHHHHHHHTSS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEECCCHHHHHHH--HHhc-----hhcccccccccchHHHHHHHHHHhCC
Confidence            48899999999999999998 5899998 88888876543111  1110     000000000  001222222      


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ...|+|+-+... +.    .-...++.+++|..++.++-
T Consensus       251 ~g~Dvvid~~g~-~~----~~~~~~~~l~~~G~iv~~G~  284 (363)
T 3m6i_A          251 IEPAVALECTGV-ES----SIAAAIWAVKFGGKVFVIGV  284 (363)
T ss_dssp             CCCSEEEECSCC-HH----HHHHHHHHSCTTCEEEECCC
T ss_pred             CCCCEEEECCCC-hH----HHHHHHHHhcCCCEEEEEcc
Confidence            258999998863 21    12456788999999999874

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=95.15  E-value=0.015  Score=54.36  Aligned_cols=95  Identities=13%  Similarity=0.085  Sum_probs=60.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcC--CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccc-cCCHHHHhh--cC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR-ASSMDEVLR--EA  237 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~af--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~l~~ll~--~a  237 (342)
                      .|++|.|+|.|.||...++. ++.+  |++|++.++++++...  ...+       +.... .... .+..+++-.  ..
T Consensus       170 ~g~~VlV~GaG~vG~~aiql-ak~~~~Ga~Vi~~~~~~~~~~~--~~~l-------Ga~~vi~~~~~~~~~~~~~~g~g~  239 (344)
T 2h6e_A          170 AEPVVIVNGIGGLAVYTIQI-LKALMKNITIVGISRSKKHRDF--ALEL-------GADYVSEMKDAESLINKLTDGLGA  239 (344)
T ss_dssp             SSCEEEEECCSHHHHHHHHH-HHHHCTTCEEEEECSCHHHHHH--HHHH-------TCSEEECHHHHHHHHHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHhcCCCEEEEEeCCHHHHHH--HHHh-------CCCEEeccccchHHHHHhhcCCCc
Confidence            68999999999999999998 5888  9999999987654311  1111       11110 0000 001222221  57


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+|+.++.. +++    -...++.++++..++.++-
T Consensus       240 D~vid~~g~-~~~----~~~~~~~l~~~G~iv~~g~  270 (344)
T 2h6e_A          240 SIAIDLVGT-EET----TYNLGKLLAQEGAIILVGM  270 (344)
T ss_dssp             EEEEESSCC-HHH----HHHHHHHEEEEEEEEECCC
T ss_pred             cEEEECCCC-hHH----HHHHHHHhhcCCEEEEeCC
Confidence            999998863 211    2456788888888888763

>3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti}

Probab=95.14  E-value=0.06  Score=48.59  Aligned_cols=108  Identities=16%  Similarity=0.185  Sum_probs=63.6

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC----ccccccCCHHHHhh
Q 019387          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP----VTWKRASSMDEVLR  235 (342)
Q Consensus       161 ~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~ll~  235 (342)
                      ..+.||++.|.|- |.||+++|+.|+ .-|++|++.+++.....+......    ...+...    .......++++++.
T Consensus        27 ~~l~gk~~lVTGas~GIG~aia~~la-~~G~~V~~~~~~~~~~~~~~~~~l----~~~~~~~~~~~~Dv~d~~~v~~~~~  101 (271)
T 3v2g_A           27 ISLAGKTAFVTGGSRGIGAAIAKRLA-LEGAAVALTYVNAAERAQAVVSEI----EQAGGRAVAIRADNRDAEAIEQAIR  101 (271)
T ss_dssp             TCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHH----HHTTCCEEEEECCTTCHHHHHHHHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCCHHHHHHHHHHH----HhcCCcEEEEECCCCCHHHHHHHHH
Confidence            4689999999996 689999999985 679999988666544333322211    1111110    01111223444444


Q ss_pred             -------cCCEEEEcCCCCcc------c----c-----c-----ccCHHHHhcCCCCcEEEEcCC
Q 019387          236 -------EADVISLHPVLDKT------T----Y-----H-----LINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 -------~aDiV~l~~pl~~~------t----~-----~-----li~~~~l~~mk~ga~lINvaR  273 (342)
                             .-|+++.+.-....      +    .     +     .+.+..+..|+++..+||++.
T Consensus       102 ~~~~~~g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~isS  166 (271)
T 3v2g_A          102 ETVEALGGLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIGS  166 (271)
T ss_dssp             HHHHHHSCCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred             HHHHHcCCCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence                   67999887643211      0    0     1     112345677888888999864

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=95.14  E-value=0.042  Score=51.83  Aligned_cols=31  Identities=26%  Similarity=0.434  Sum_probs=24.7

Q ss_pred             eEEEEecCHHHHHHHHHHHh---cCCcEEEEEcC
Q 019387          167 TVGVIGAGRIGSAYARMMVE---GFKMNLIYYDL  197 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~---afg~~V~~~d~  197 (342)
                      +|||+|+|.||+.+.|.|..   .=+++|.+.+.
T Consensus         4 kVgI~G~G~iGr~l~r~l~~~~~~~~~eivai~~   37 (339)
T 2x5j_O            4 RVAINGFGRIGRNVVRALYESGRRAEITVVAINE   37 (339)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTSGGGTEEEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHcCCCCCCEEEEEEeC
Confidence            79999999999999998743   22688876544

>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}

Probab=95.14  E-value=0.042  Score=51.94  Aligned_cols=69  Identities=14%  Similarity=0.215  Sum_probs=47.5

Q ss_pred             CeEEEEecCHHHH-HHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEEE
Q 019387          166 QTVGVIGAGRIGS-AYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~-~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV~  241 (342)
                      .+|||||+|.+|. ..+..+ +.-++++. ++|+.++. .+.+.+.|       +.    ...+.++++++..  .|+|+
T Consensus        27 irvgiiG~G~~~~~~~~~~~-~~~~~~lvav~d~~~~~-a~~~a~~~-------~~----~~~~~~~~~ll~~~~vD~V~   93 (361)
T 3u3x_A           27 LRFAAVGLNHNHIYGQVNCL-LRAGARLAGFHEKDDAL-AAEFSAVY-------AD----ARRIATAEEILEDENIGLIV   93 (361)
T ss_dssp             CEEEEECCCSTTHHHHHHHH-HHTTCEEEEEECSCHHH-HHHHHHHS-------SS----CCEESCHHHHHTCTTCCEEE
T ss_pred             cEEEEECcCHHHHHHHHHHh-hcCCcEEEEEEcCCHHH-HHHHHHHc-------CC----CcccCCHHHHhcCCCCCEEE
Confidence            5899999999995 466665 45688866 57887653 23322222       11    1235799999975  89999


Q ss_pred             EcCCCC
Q 019387          242 LHPVLD  247 (342)
Q Consensus       242 l~~pl~  247 (342)
                      +|.|..
T Consensus        94 I~tp~~   99 (361)
T 3u3x_A           94 SAAVSS   99 (361)
T ss_dssp             ECCCHH
T ss_pred             EeCChH
Confidence            999843

>1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii}

Probab=95.12  E-value=0.015  Score=55.11  Aligned_cols=102  Identities=13%  Similarity=0.159  Sum_probs=51.1

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhc---cCCCCccccccCCHHHHhh-cCCEE
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKA---NGEQPVTWKRASSMDEVLR-EADVI  240 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~ll~-~aDiV  240 (342)
                      .+|||+| .|.||+.+++.|.+.=+++|.++.++.......+...+..+...   .+.....+.. .+.++++. ++|+|
T Consensus         9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~DvV   87 (354)
T 1ys4_A            9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIP-TDPKHEEFEDVDIV   87 (354)
T ss_dssp             EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEE-SCTTSGGGTTCCEE
T ss_pred             ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEe-CCHHHHhcCCCCEE
Confidence            4899999 99999999999743224688766321111101111111100000   0000011111 13455556 89999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ++|+|... ++.+. .   ...+.|+.+|+.+-
T Consensus        88 ~~atp~~~-~~~~a-~---~~~~aG~~VId~s~  115 (354)
T 1ys4_A           88 FSALPSDL-AKKFE-P---EFAKEGKLIFSNAS  115 (354)
T ss_dssp             EECCCHHH-HHHHH-H---HHHHTTCEEEECCS
T ss_pred             EECCCchH-HHHHH-H---HHHHCCCEEEECCc
Confidence            99998421 11111 1   12346788888763

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=95.11  E-value=0.086  Score=47.16  Aligned_cols=39  Identities=15%  Similarity=0.236  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~G---~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++.|-|-+   .||+++|+.|+ ..|++|++.+++.+.
T Consensus         3 ~l~gK~alVTGaa~~~GIG~aiA~~la-~~Ga~Vvi~~r~~~~   44 (256)
T 4fs3_A            3 NLENKTYVIMGIANKRSIAFGVAKVLD-QLGAKLVFTYRKERS   44 (256)
T ss_dssp             CCTTCEEEEECCCSTTCHHHHHHHHHH-HTTCEEEEEESSGGG
T ss_pred             CCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            5899999999974   69999999985 789999999987643

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.06  E-value=0.035  Score=53.05  Aligned_cols=100  Identities=14%  Similarity=0.070  Sum_probs=61.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCH-HH----Hhh--
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DE----VLR--  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~----ll~--  235 (342)
                      .|++|.|+|.|.||...++. ++.+|+ +|++.+++++.. +. ...+       +........ .++ .+    +..  
T Consensus       185 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~-~~-a~~l-------Ga~~i~~~~-~~~~~~~~~~~~~g~  253 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAG-ARLLGAACVIVGDQNPERL-KL-LSDA-------GFETIDLRN-SAPLRDQIDQILGKP  253 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHHTCSEEEEEESCHHHH-HH-HHTT-------TCEEEETTS-SSCHHHHHHHHHSSS
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEEcCCHHHH-HH-HHHc-------CCcEEcCCC-cchHHHHHHHHhCCC
Confidence            48899999999999999998 588999 999999876543 11 1111       211111111 121 22    222  


Q ss_pred             cCCEEEEcCCCCccc-----c----cccCHHHHhcCCCCcEEEEcCCC
Q 019387          236 EADVISLHPVLDKTT-----Y----HLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t-----~----~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      ..|+|+-++......     .    .-.-...++.+++|..++.++-.
T Consensus       254 g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~  301 (398)
T 2dph_A          254 EVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIY  301 (398)
T ss_dssp             CEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCC
T ss_pred             CCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccc
Confidence            489999998643100     0    00124567888889888887643

>4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes}

Probab=95.05  E-value=0.036  Score=53.37  Aligned_cols=78  Identities=13%  Similarity=0.090  Sum_probs=49.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCC---cEEEEEcCCchhHHHHHHhhhhhhhhccCCC--CccccccCCHHHHhhc--CC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFK---MNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLRE--AD  238 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg---~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ll~~--aD  238 (342)
                      ++|+|+|.|.||+.+++.|+ ..|   .+|.+++++.+. .+...+.+.... .....  ........++++++++  +|
T Consensus         2 ~kVlIiGaGgiG~~ia~~L~-~~g~~~~~V~v~~r~~~~-~~~la~~l~~~~-~~~~~~~~~D~~d~~~l~~~l~~~~~D   78 (405)
T 4ina_A            2 AKVLQIGAGGVGGVVAHKMA-MNREVFSHITLASRTLSK-CQEIAQSIKAKG-YGEIDITTVDADSIEELVALINEVKPQ   78 (405)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-TCTTTCCEEEEEESCHHH-HHHHHHHHHHTT-CCCCEEEECCTTCHHHHHHHHHHHCCS
T ss_pred             CEEEEECCCHHHHHHHHHHH-hCCCCceEEEEEECCHHH-HHHHHHHhhhhc-CCceEEEEecCCCHHHHHHHHHhhCCC
Confidence            58999999999999999985 555   499999998754 222222221100 00000  0111123467888888  89


Q ss_pred             EEEEcCCC
Q 019387          239 VISLHPVL  246 (342)
Q Consensus       239 iV~l~~pl  246 (342)
                      +|+.+.|.
T Consensus        79 vVin~ag~   86 (405)
T 4ina_A           79 IVLNIALP   86 (405)
T ss_dssp             EEEECSCG
T ss_pred             EEEECCCc
Confidence            99999873

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=95.04  E-value=0.022  Score=53.78  Aligned_cols=94  Identities=15%  Similarity=0.099  Sum_probs=61.8

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-----cC
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-----~a  237 (342)
                      .|++|.|+| .|.||..+++.+ +.+|++|++.+++++.. +. ...+       +....-.....++.+.+.     ..
T Consensus       163 ~g~~VlV~Ga~G~iG~~~~q~a-~~~Ga~Vi~~~~~~~~~-~~-~~~~-------Ga~~~~~~~~~~~~~~~~~~~~~g~  232 (362)
T 2c0c_A          163 EGKKVLVTAAAGGTGQFAMQLS-KKAKCHVIGTCSSDEKS-AF-LKSL-------GCDRPINYKTEPVGTVLKQEYPEGV  232 (362)
T ss_dssp             TTCEEEETTTTBTTHHHHHHHH-HHTTCEEEEEESSHHHH-HH-HHHT-------TCSEEEETTTSCHHHHHHHHCTTCE
T ss_pred             CCCEEEEeCCCcHHHHHHHHHH-HhCCCEEEEEECCHHHH-HH-HHHc-------CCcEEEecCChhHHHHHHHhcCCCC
Confidence            488999999 799999999985 89999999999876432 11 1111       111100001123444332     47


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+|+.|...  .    .-...++.++++..+|.++-
T Consensus       233 D~vid~~g~--~----~~~~~~~~l~~~G~iv~~g~  262 (362)
T 2c0c_A          233 DVVYESVGG--A----MFDLAVDALATKGRLIVIGF  262 (362)
T ss_dssp             EEEEECSCT--H----HHHHHHHHEEEEEEEEECCC
T ss_pred             CEEEECCCH--H----HHHHHHHHHhcCCEEEEEeC
Confidence            999988763  1    23467788999999999875

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=95.03  E-value=0.052  Score=52.77  Aligned_cols=75  Identities=15%  Similarity=0.212  Sum_probs=48.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccC----CHHHHhh--cCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRAS----SMDEVLR--EAD  238 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~ll~--~aD  238 (342)
                      .+|||||+|.||+..++.+.+.-++++. ++|+.++.. +.+.+.+.    ..+...  ...+.    +++++++  +.|
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~-~~~a~~~~----~~g~~~--~~~~~~~~~~~~~ll~~~~vD   93 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMV-GRAQEILK----KNGKKP--AKVFGNGNDDYKNMLKDKNID   93 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHH-HHHHHHHH----HTTCCC--CEEECSSTTTHHHHTTCTTCC
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHH-HHHHHHHH----hcCCCC--CceeccCCCCHHHHhcCCCCC
Confidence            4899999999999999887432378875 678876532 22211110    011110  11234    8999997  589


Q ss_pred             EEEEcCCCC
Q 019387          239 VISLHPVLD  247 (342)
Q Consensus       239 iV~l~~pl~  247 (342)
                      +|++|+|..
T Consensus        94 ~V~i~tp~~  102 (444)
T 2ixa_A           94 AVFVSSPWE  102 (444)
T ss_dssp             EEEECCCGG
T ss_pred             EEEEcCCcH
Confidence            999999943

>1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1

Probab=95.02  E-value=0.1  Score=49.34  Aligned_cols=101  Identities=14%  Similarity=0.179  Sum_probs=60.2

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +-.+||||| .|.+|+++.++|..-=..++......... -....+.+..+.     ....+.. .+.++++.++|++++
T Consensus        12 ~~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~a-G~~~~~~~p~~~-----~~l~~~~-~~~~~~~~~~Dvvf~   84 (351)
T 1vkn_A           12 HMIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYA-GKKLEEIFPSTL-----ENSILSE-FDPEKVSKNCDVLFT   84 (351)
T ss_dssp             CCEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTT-TSBHHHHCGGGC-----CCCBCBC-CCHHHHHHHCSEEEE
T ss_pred             ceeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccc-cCChHHhChhhc-----cCceEEe-CCHHHhhcCCCEEEE
Confidence            456899997 79999999999853324576665432211 111111111111     1122222 245666688999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd  278 (342)
                      |+|..      ...+....+ .|+.+|+.+-.-=.+
T Consensus        85 alp~~------~s~~~~~~~-~g~~VIDlSsdfRl~  113 (351)
T 1vkn_A           85 ALPAG------ASYDLVREL-KGVKIIDLGADFRFD  113 (351)
T ss_dssp             CCSTT------HHHHHHTTC-CSCEEEESSSTTTCS
T ss_pred             CCCcH------HHHHHHHHh-CCCEEEECChhhhCC
Confidence            99943      335566666 799999998543344

>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}

Probab=95.01  E-value=0.088  Score=50.75  Aligned_cols=73  Identities=15%  Similarity=0.158  Sum_probs=48.0

Q ss_pred             CeEEEEecCH---HHHHHHHHHHhcCCcEEE--EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc----
Q 019387          166 QTVGVIGAGR---IGSAYARMMVEGFKMNLI--YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE----  236 (342)
Q Consensus       166 ktvgIvG~G~---IG~~vA~~l~~afg~~V~--~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~----  236 (342)
                      .+|||||+|.   ||+..+..+...-++++.  ++|+.++. .+.+.+.+       +...  ...+.++++++..    
T Consensus        38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~-a~~~a~~~-------g~~~--~~~~~~~~~ll~~~~~~  107 (417)
T 3v5n_A           38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEK-AEASGREL-------GLDP--SRVYSDFKEMAIREAKL  107 (417)
T ss_dssp             EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHH-HHHHHHHH-------TCCG--GGBCSCHHHHHHHHHHC
T ss_pred             ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHH-HHHHHHHc-------CCCc--ccccCCHHHHHhccccc
Confidence            4899999999   999988775323347776  46887653 23322222       1110  1245799999986    


Q ss_pred             ---CCEEEEcCCCCc
Q 019387          237 ---ADVISLHPVLDK  248 (342)
Q Consensus       237 ---aDiV~l~~pl~~  248 (342)
                         .|+|++|.|...
T Consensus       108 ~~~vD~V~I~tp~~~  122 (417)
T 3v5n_A          108 KNGIEAVAIVTPNHV  122 (417)
T ss_dssp             TTCCSEEEECSCTTS
T ss_pred             CCCCcEEEECCCcHH
Confidence               899999999643

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=95.01  E-value=0.051  Score=50.54  Aligned_cols=69  Identities=13%  Similarity=0.190  Sum_probs=44.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHh-cCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-----cCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EAD  238 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~-afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-----~aD  238 (342)
                      .+|||||+|.||+.+++.+.+ .-++++. ++|+.++.....+.+.+       +..    ....+.++++.     +.|
T Consensus         5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~-------g~~----~~~~~~e~ll~~~~~~~iD   73 (312)
T 1nvm_B            5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRM-------GVT----TTYAGVEGLIKLPEFADID   73 (312)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHT-------TCC----EESSHHHHHHHSGGGGGEE
T ss_pred             CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHc-------CCC----cccCCHHHHHhccCCCCCc
Confidence            489999999999999998744 3467765 57877554112211111       110    01246677764     479


Q ss_pred             EEEEcCC
Q 019387          239 VISLHPV  245 (342)
Q Consensus       239 iV~l~~p  245 (342)
                      +|+.|+|
T Consensus        74 vV~~atp   80 (312)
T 1nvm_B           74 FVFDATS   80 (312)
T ss_dssp             EEEECSC
T ss_pred             EEEECCC
Confidence            9999998

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=95.01  E-value=0.033  Score=52.91  Aligned_cols=94  Identities=16%  Similarity=0.117  Sum_probs=60.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc----cCCHH----HHh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR----ASSMD----EVL  234 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~l~----~ll  234 (342)
                      .|++|.|+|.|.+|...++. ++.+| .+|++.+++++....  ...+       +.... +..    ..++.    ++.
T Consensus       195 ~g~~VlV~GaG~vG~~aiql-ak~~Ga~~Vi~~~~~~~~~~~--~~~l-------Ga~~v-i~~~~~~~~~~~~~v~~~~  263 (380)
T 1vj0_A          195 AGKTVVIQGAGPLGLFGVVI-ARSLGAENVIVIAGSPNRLKL--AEEI-------GADLT-LNRRETSVEERRKAIMDIT  263 (380)
T ss_dssp             BTCEEEEECCSHHHHHHHHH-HHHTTBSEEEEEESCHHHHHH--HHHT-------TCSEE-EETTTSCHHHHHHHHHHHT
T ss_pred             CCCEEEEECcCHHHHHHHHH-HHHcCCceEEEEcCCHHHHHH--HHHc-------CCcEE-EeccccCcchHHHHHHHHh
Confidence            48899999999999999998 58999 599999987654311  1111       11110 110    01222    222


Q ss_pred             h--cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          235 R--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       235 ~--~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .  ..|+|+.++...+     .-...++.++++..+|.++-
T Consensus       264 ~g~g~Dvvid~~g~~~-----~~~~~~~~l~~~G~iv~~G~  299 (380)
T 1vj0_A          264 HGRGADFILEATGDSR-----ALLEGSELLRRGGFYSVAGV  299 (380)
T ss_dssp             TTSCEEEEEECSSCTT-----HHHHHHHHEEEEEEEEECCC
T ss_pred             CCCCCcEEEECCCCHH-----HHHHHHHHHhcCCEEEEEec
Confidence            2  4799998886321     12456788889989998874

>2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus}

Probab=94.98  E-value=0.05  Score=51.37  Aligned_cols=95  Identities=15%  Similarity=0.161  Sum_probs=52.2

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .+|||+| .|.||+.+.+.|...=.+++.+.....+.. .++...+..+   .+.....   ..++++ +.++|+|+.|+
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g-~~~~~~~~~~---~g~~~~~---~~~~~~-~~~vDvV~~a~   76 (345)
T 2ozp_A            5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAG-EPVHFVHPNL---RGRTNLK---FVPPEK-LEPADILVLAL   76 (345)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTT-SBGGGTCGGG---TTTCCCB---CBCGGG-CCCCSEEEECC
T ss_pred             CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhC-chhHHhCchh---cCccccc---ccchhH-hcCCCEEEEcC
Confidence            4899999 899999999997433346877654432211 1111111100   0101111   123333 47899999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |.... +.+.    -..++.|+.+|+.+-
T Consensus        77 g~~~s-~~~a----~~~~~aG~~VId~Sa  100 (345)
T 2ozp_A           77 PHGVF-AREF----DRYSALAPVLVDLSA  100 (345)
T ss_dssp             CTTHH-HHTH----HHHHTTCSEEEECSS
T ss_pred             CcHHH-HHHH----HHHHHCCCEEEEcCc
Confidence            85422 1111    122467888999864

>3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp}

Probab=94.98  E-value=0.1  Score=47.56  Aligned_cols=38  Identities=24%  Similarity=0.127  Sum_probs=32.8

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       161 ~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      ..+.||++.|.|- |.||+.+|+.|+ .-|++|++.++..
T Consensus        45 ~~l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~~~~   83 (294)
T 3r3s_A           45 GRLKDRKALVTGGDSGIGRAAAIAYA-REGADVAINYLPA   83 (294)
T ss_dssp             STTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEECCGG
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCc
Confidence            4688999999996 689999999985 6799999988864

>1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A*

Probab=94.95  E-value=0.035  Score=52.42  Aligned_cols=95  Identities=15%  Similarity=0.154  Sum_probs=57.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhccCCCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQP  221 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~  221 (342)
                      ..|.+++|.|+|+|.+|.++|+.|+ ..|. ++..+|...-                  .+.+...+.....   .....
T Consensus        32 ~~L~~~~VlivG~GGlG~~ia~~La-~~Gvg~itlvD~d~V~~sNL~rq~~~~~~diG~~Ka~~~~~~l~~l---np~v~  107 (346)
T 1y8q_A           32 KRLRASRVLLVGLKGLGAEIAKNLI-LAGVKGLTMLDHEQVTPEDPGAQFLIRTGSVGRNRAEASLERAQNL---NPMVD  107 (346)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCCBCCSSCGGGCTTSCSSCTTSBHHHHHHHHHHHT---CTTSE
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-HcCCCEEEEEECCCcchhhCCCCCccccccCcCCHHHHHHHHHHhH---CCCeE
Confidence            4688999999999999999999985 5577 7888875421                  1111111111000   00000


Q ss_pred             ccccc---cCCHHHHhhcCCEEEEcCCCCcccccccCHHHHh
Q 019387          222 VTWKR---ASSMDEVLREADVISLHPVLDKTTYHLINKERLA  260 (342)
Q Consensus       222 ~~~~~---~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~  260 (342)
                      .....   ....++++.++|+|+.|. .+.+++..+++...+
T Consensus       108 v~~~~~~~~~~~~~~~~~~dvVv~~~-d~~~~r~~ln~~~~~  148 (346)
T 1y8q_A          108 VKVDTEDIEKKPESFFTQFDAVCLTC-CSRDVIVKVDQICHK  148 (346)
T ss_dssp             EEEECSCGGGCCHHHHTTCSEEEEES-CCHHHHHHHHHHHHH
T ss_pred             EEEEecccCcchHHHhcCCCEEEEcC-CCHHHHHHHHHHHHH
Confidence            10100   012467889999999886 467777777775444

>2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A*

Probab=94.95  E-value=0.16  Score=49.96  Aligned_cols=110  Identities=12%  Similarity=0.071  Sum_probs=68.8

Q ss_pred             cccCCCeEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh---hhccCCCCcccccc
Q 019387          161 NLLKGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF---LKANGEQPVTWKRA  227 (342)
Q Consensus       161 ~~L~gktvgIvG~G----------~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~  227 (342)
                      ..+.|++|+|+|+-          .=...+++.| ...|++|.+|||........   .|+..   +....   ......
T Consensus       324 ~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L-~~~g~~v~~~DP~~~~~~~~---~~~~~~~~~~~~~---~~~~~~  396 (478)
T 2y0c_A          324 EDLTGRTFAIWGLAFKPNTDDMREAPSRELIAEL-LSRGARIAAYDPVAQEEARR---VIALDLADHPSWL---ERLSFV  396 (478)
T ss_dssp             SCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHH-HHTTCEEEEECTTTHHHHHH---HHHHHTTTCHHHH---TTEEEC
T ss_pred             ccCCCCEEEEEecccCCCCCccccChHHHHHHHH-HHCCCEEEEECCCccHHHHH---hhccccccccccc---cceeec
Confidence            36889999999983          3567888887 68999999999986432111   11100   00000   012234


Q ss_pred             CCHHHHhhcCCEEEEcCCCCcccccccCHHHH-hcCCCCcEEEEcCCCcccCHHHH
Q 019387          228 SSMDEVLREADVISLHPVLDKTTYHLINKERL-ATMKKEAILVNCSRGPVIDEVAL  282 (342)
Q Consensus       228 ~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l-~~mk~ga~lINvaRG~~vd~~aL  282 (342)
                      .++++.++++|+|+++..- ++-+ -++.+.+ +.|+ +.+++|+ |+ ++|.+.+
T Consensus       397 ~~~~~~~~~ad~~vi~t~~-~~f~-~~~~~~~~~~~~-~~~i~D~-r~-~~~~~~~  447 (478)
T 2y0c_A          397 DDEAQAARDADALVIVTEW-KIFK-SPDFVALGRLWK-TPVIFDG-RN-LYEPETM  447 (478)
T ss_dssp             SSHHHHTTTCSEEEECSCC-GGGG-SCCHHHHHTTCS-SCEEEES-SC-CSCHHHH
T ss_pred             CCHHHHHhCCCEEEEecCC-hHhh-ccCHHHHHhhcC-CCEEEEC-CC-CCCHHHH
Confidence            6788999999999999864 3333 2344444 4566 4788887 54 4565543

>3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli}

Probab=94.92  E-value=1.2  Score=42.74  Aligned_cols=106  Identities=20%  Similarity=0.308  Sum_probs=65.3

Q ss_pred             ccCCCeEEEEec-----C---HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH
Q 019387          162 LLKGQTVGVIGA-----G---RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV  233 (342)
Q Consensus       162 ~L~gktvgIvG~-----G---~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  233 (342)
                      .|.|++|+|+|-     |   ++.++.+..+ ..||++|.+..|..-...+...+.........+   ..+....++++.
T Consensus       188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~-~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G---~~i~~~~d~~ea  263 (399)
T 3q98_A          188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLM-TRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASG---GSFRQVTSMEEA  263 (399)
T ss_dssp             GGTTCEEEEECCCCSSCCCCTHHHHHHHHHH-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CEEEEESCHHHH
T ss_pred             ccCCCEEEEEEecccccCcchHHHHHHHHHH-HHcCCEEEEECCcccCCCHHHHHHHHHHHHHcC---CEEEEEcCHHHH
Confidence            478999999973     5   7889999886 579999999887531111111110000011111   123345789999


Q ss_pred             hhcCCEEEEcCCCC--c-------------------c----------cccccCHHHHhcCCC-CcEEEEc
Q 019387          234 LREADVISLHPVLD--K-------------------T----------TYHLINKERLATMKK-EAILVNC  271 (342)
Q Consensus       234 l~~aDiV~l~~pl~--~-------------------~----------t~~li~~~~l~~mk~-ga~lINv  271 (342)
                      ++++|+|..-+-.+  .                   +          ...-+|.+.++..++ +++|.=+
T Consensus       264 v~~aDvVytd~W~Smg~~~er~~~~~~~~~~~~~~~e~~~~~r~~~~~~yqVn~elm~~a~~~daifMHc  333 (399)
T 3q98_A          264 FKDADIVYPKSWAPYKVMEERTELLRANDHEGLKALEKQCLAQNAQHKDWHCTEEMMELTRDGEALYMHC  333 (399)
T ss_dssp             HTTCSEEEECCCCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTTTCCBCHHHHHTSGGGCCEECCC
T ss_pred             hCCCCEEEecCccccchhhhhhhhccccchhhhhhhhhhhhHHHHHccCcEECHHHHhhcCCCCcEEECC
Confidence            99999998754211  0                   0          124478888888874 7777655

>3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A*

Probab=94.82  E-value=0.082  Score=51.62  Aligned_cols=122  Identities=16%  Similarity=0.127  Sum_probs=65.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhh-hhh-h-hhcc-CC-------CCccccccCCHHHH
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTA-YGQ-F-LKAN-GE-------QPVTWKRASSMDEV  233 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~-~~~-~-~~~~-~~-------~~~~~~~~~~l~~l  233 (342)
                      -+|||||+|.||+..++.+.+.-++++. ++|++++.. +.+... |+. + +... ..       .......+++++++
T Consensus        24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era-~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeL  102 (446)
T 3upl_A           24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNT-FKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLI  102 (446)
T ss_dssp             EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHH-HHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHH
T ss_pred             eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHH-HHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHH
Confidence            4899999999999999887434478876 578876543 222111 110 0 0000 00       00012245789999


Q ss_pred             hh--cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcCCce
Q 019387          234 LR--EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQNPMF  292 (342)
Q Consensus       234 l~--~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~aL~~g~i~  292 (342)
                      +.  +.|+|++++|.. +.+.   +-.+..++.|.-++...-+-. .+-+.|.++-++..+.
T Consensus       103 L~d~dIDaVviaTp~p-~~H~---e~a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvv  160 (446)
T 3upl_A          103 LSNPLIDVIIDATGIP-EVGA---ETGIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVI  160 (446)
T ss_dssp             HTCTTCCEEEECSCCH-HHHH---HHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hcCCCCCEEEEcCCCh-HHHH---HHHHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCe
Confidence            97  489999999842 2211   223445556655553221111 1234566655544333

>3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A*

Probab=94.80  E-value=0.14  Score=47.51  Aligned_cols=108  Identities=21%  Similarity=0.257  Sum_probs=64.5

Q ss_pred             eEEEEe-cCHHHHHHHHHHHh--cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccccc--CCHHHHhhcCCEEE
Q 019387          167 TVGVIG-AGRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA--SSMDEVLREADVIS  241 (342)
Q Consensus       167 tvgIvG-~G~IG~~vA~~l~~--afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~ll~~aDiV~  241 (342)
                      +|+|+| .|.+|+.+|..|+.  .+.-++..+|..+.  .+.....    +... ..+......  ++..+.+++||+|+
T Consensus         2 KV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~--~~G~a~D----l~~~-~~~~~v~~~~~~~~~~~~~~aDivi   74 (312)
T 3hhp_A            2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPV--TPGVAVD----LSHI-PTAVKIKGFSGEDATPALEGADVVL   74 (312)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTT--HHHHHHH----HHTS-CSSEEEEEECSSCCHHHHTTCSEEE
T ss_pred             EEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCC--chhHHHH----hhCC-CCCceEEEecCCCcHHHhCCCCEEE
Confidence            799999 99999999998754  36678999998762  1111111    1111 111112111  24567889999999


Q ss_pred             EcCCCCc---ccc-ccc--CH-------HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 019387          242 LHPVLDK---TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVALV  283 (342)
Q Consensus       242 l~~pl~~---~t~-~li--~~-------~~l~~mk~ga~lINvaRG~~vd~~aL~  283 (342)
                      ++.+...   .|| .++  |.       +.+....|++++++++  +.+|.-..+
T Consensus        75 i~ag~~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t~~  127 (312)
T 3hhp_A           75 ISAGVARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTVAI  127 (312)
T ss_dssp             ECCSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHHHH
T ss_pred             EeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHHHH
Confidence            9875421   121 122  11       2233445788999995  567666555

>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp}

Probab=94.79  E-value=0.019  Score=56.51  Aligned_cols=94  Identities=15%  Similarity=0.189  Sum_probs=53.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc---EEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCC----HHHHhhc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM---NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASS----MDEVLRE  236 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~---~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----l~~ll~~  236 (342)
                      .++|.|||+|.||+.+|+.|++..++   +|+..|+....+.  ..+..       +....... ..++    ++.++++
T Consensus        13 ~~rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~~~~~--~~~~~-------g~~~~~~~Vdadnv~~~l~aLl~~   83 (480)
T 2ph5_A           13 KNRFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVD--VAQQY-------GVSFKLQQITPQNYLEVIGSTLEE   83 (480)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSCCSCC--HHHHH-------TCEEEECCCCTTTHHHHTGGGCCT
T ss_pred             CCCEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccchhhhh--HHhhc-------CCceeEEeccchhHHHHHHHHhcC
Confidence            34699999999999999998766665   6888887654321  00100       10000000 0122    3445666


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcC-CCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~m-k~ga~lINvaR  273 (342)
                      .|+|+.+.+..      .+-..++.+ +.|+-.+|++=
T Consensus        84 ~DvVIN~s~~~------~~l~Im~acleaGv~YlDTa~  115 (480)
T 2ph5_A           84 NDFLIDVSIGI------SSLALIILCNQKGALYINAAT  115 (480)
T ss_dssp             TCEEEECCSSS------CHHHHHHHHHHHTCEEEESSC
T ss_pred             CCEEEECCccc------cCHHHHHHHHHcCCCEEECCC
Confidence            68888766532      223333333 46888888874

>3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A

Probab=94.79  E-value=0.04  Score=53.61  Aligned_cols=70  Identities=11%  Similarity=0.107  Sum_probs=48.9

Q ss_pred             CeEEEEec----CHHHHHHHHHHHhcC--CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--c
Q 019387          166 QTVGVIGA----GRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E  236 (342)
Q Consensus       166 ktvgIvG~----G~IG~~vA~~l~~af--g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~  236 (342)
                      .+|||||+    |.||+..++.| +..  ++++. ++|+.++. .+.+.+.+       +..  ....+.++++++.  +
T Consensus        21 irvgiIG~g~~gG~~g~~~~~~l-~~~~~~~~lvav~d~~~~~-~~~~a~~~-------g~~--~~~~~~~~~~ll~~~~   89 (438)
T 3btv_A           21 IRVGFVGLNAAKGWAIKTHYPAI-LQLSSQFQITALYSPKIET-SIATIQRL-------KLS--NATAFPTLESFASSST   89 (438)
T ss_dssp             EEEEEESCCTTSSSTTTTHHHHH-HHTTTTEEEEEEECSSHHH-HHHHHHHT-------TCT--TCEEESSHHHHHHCSS
T ss_pred             CEEEEEcccCCCChHHHHHHHHH-HhcCCCeEEEEEEeCCHHH-HHHHHHHc-------CCC--cceeeCCHHHHhcCCC
Confidence            48999999    99999999987 455  78875 68887653 22222222       111  1123578999997  5


Q ss_pred             CCEEEEcCCC
Q 019387          237 ADVISLHPVL  246 (342)
Q Consensus       237 aDiV~l~~pl  246 (342)
                      .|+|++|+|.
T Consensus        90 vD~V~i~tp~   99 (438)
T 3btv_A           90 IDMIVIAIQV   99 (438)
T ss_dssp             CSEEEECSCH
T ss_pred             CCEEEEeCCc
Confidence            8999999984

>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}

Probab=94.72  E-value=0.028  Score=45.00  Aligned_cols=100  Identities=14%  Similarity=0.098  Sum_probs=67.3

Q ss_pred             CeEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          166 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvgIvG~----G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      ++|.|||.    |+.|..+.+.| +..|.+|+-.+|.....                   .+...+.++.++-. -|+++
T Consensus         5 ~siAVVGaS~~~~~~g~~v~~~L-~~~g~~V~pVnP~~~~i-------------------~G~~~y~sl~dlp~-vDlav   63 (122)
T 3ff4_A            5 KKTLILGATPETNRYAYLAAERL-KSHGHEFIPVGRKKGEV-------------------LGKTIINERPVIEG-VDTVT   63 (122)
T ss_dssp             CCEEEETCCSCTTSHHHHHHHHH-HHHTCCEEEESSSCSEE-------------------TTEECBCSCCCCTT-CCEEE
T ss_pred             CEEEEEccCCCCCCHHHHHHHHH-HHCCCeEEEECCCCCcC-------------------CCeeccCChHHCCC-CCEEE
Confidence            68999998    56899999997 67788999998864321                   12234567777767 99999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~  293 (342)
                      +++|. +.+..++.+-  ..+...+++++-+-    .++++.+..++..+.-
T Consensus        64 i~~p~-~~v~~~v~e~--~~~g~k~v~~~~G~----~~~e~~~~a~~~Girv  108 (122)
T 3ff4_A           64 LYINP-QNQLSEYNYI--LSLKPKRVIFNPGT----ENEELEEILSENGIEP  108 (122)
T ss_dssp             ECSCH-HHHGGGHHHH--HHHCCSEEEECTTC----CCHHHHHHHHHTTCEE
T ss_pred             EEeCH-HHHHHHHHHH--HhcCCCEEEECCCC----ChHHHHHHHHHcCCeE
Confidence            99984 4455555443  22344467765542    3456777777766653

>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A

Probab=94.70  E-value=0.083  Score=52.03  Aligned_cols=70  Identities=10%  Similarity=0.174  Sum_probs=48.8

Q ss_pred             CeEEEEec----CHHHHHHHHHHHhcC--CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--c
Q 019387          166 QTVGVIGA----GRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E  236 (342)
Q Consensus       166 ktvgIvG~----G~IG~~vA~~l~~af--g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~  236 (342)
                      .+|||||+    |.||+..++.|. ..  ++++. ++|+.++. .+.+.+.+       +...  ...+.+++++++  +
T Consensus        40 irvgiIG~g~~GG~~g~~h~~~l~-~~~~~~~lvav~d~~~~~-a~~~a~~~-------g~~~--~~~~~d~~ell~~~~  108 (479)
T 2nvw_A           40 IRVGFVGLTSGKSWVAKTHFLAIQ-QLSSQFQIVALYNPTLKS-SLQTIEQL-------QLKH--ATGFDSLESFAQYKD  108 (479)
T ss_dssp             EEEEEECCCSTTSHHHHTHHHHHH-HTTTTEEEEEEECSCHHH-HHHHHHHT-------TCTT--CEEESCHHHHHHCTT
T ss_pred             CEEEEEcccCCCCHHHHHHHHHHH-hcCCCeEEEEEEeCCHHH-HHHHHHHc-------CCCc--ceeeCCHHHHhcCCC
Confidence            47999999    999999999874 54  78876 68887643 23322222       1110  123578999996  6


Q ss_pred             CCEEEEcCCC
Q 019387          237 ADVISLHPVL  246 (342)
Q Consensus       237 aDiV~l~~pl  246 (342)
                      .|+|++|+|.
T Consensus       109 vD~V~I~tp~  118 (479)
T 2nvw_A          109 IDMIVVSVKV  118 (479)
T ss_dssp             CSEEEECSCH
T ss_pred             CCEEEEcCCc
Confidence            8999999994

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=94.67  E-value=0.025  Score=52.36  Aligned_cols=93  Identities=13%  Similarity=0.144  Sum_probs=62.5

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC-HHHHhhcCCEEE
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS-MDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ll~~aDiV~  241 (342)
                      .|++|.|+| .|.+|...++. ++.+|++|++.+... +  .++...+       +....-.....+ +.+.+...|+|+
T Consensus       152 ~g~~vlV~Ga~G~vG~~a~q~-a~~~Ga~vi~~~~~~-~--~~~~~~l-------Ga~~~i~~~~~~~~~~~~~g~D~v~  220 (321)
T 3tqh_A          152 QGDVVLIHAGAGGVGHLAIQL-AKQKGTTVITTASKR-N--HAFLKAL-------GAEQCINYHEEDFLLAISTPVDAVI  220 (321)
T ss_dssp             TTCEEEESSTTSHHHHHHHHH-HHHTTCEEEEEECHH-H--HHHHHHH-------TCSEEEETTTSCHHHHCCSCEEEEE
T ss_pred             CCCEEEEEcCCcHHHHHHHHH-HHHcCCEEEEEeccc-h--HHHHHHc-------CCCEEEeCCCcchhhhhccCCCEEE
Confidence            488999997 99999999998 489999999886432 2  1222222       211110011123 666667899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      -|+.. +    .+ ...++.++++..++.++.
T Consensus       221 d~~g~-~----~~-~~~~~~l~~~G~iv~~g~  246 (321)
T 3tqh_A          221 DLVGG-D----VG-IQSIDCLKETGCIVSVPT  246 (321)
T ss_dssp             ESSCH-H----HH-HHHGGGEEEEEEEEECCS
T ss_pred             ECCCc-H----HH-HHHHHhccCCCEEEEeCC
Confidence            98863 1    12 667889999999999864

>1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A*

Probab=94.66  E-value=0.12  Score=48.06  Aligned_cols=104  Identities=21%  Similarity=0.298  Sum_probs=61.9

Q ss_pred             eEEEEec-CHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc---cCCHHHHhhcCCEE
Q 019387          167 TVGVIGA-GRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREADVI  240 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~ll~~aDiV  240 (342)
                      +|+|+|. |.+|+.++..|+ .-|  -+|..+|..+... ..  ..    +.. ...+.....   ..++++.+++||+|
T Consensus         2 KI~IiGa~G~VG~~la~~L~-~~~~~~ev~L~Di~~~~~-~a--~d----L~~-~~~~~~l~~~~~t~d~~~a~~~aDvV   72 (314)
T 1mld_A            2 KVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTPG-VA--AD----LSH-IETRATVKGYLGPEQLPDCLKGCDVV   72 (314)
T ss_dssp             EEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHHH-HH--HH----HTT-SSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred             EEEEECCCChHHHHHHHHHH-hCCCCcEEEEEeCCccHH-HH--HH----Hhc-cCcCceEEEecCCCCHHHHhCCCCEE
Confidence            7999998 999999999875 445  5899999876211 11  11    111 111111222   14688889999999


Q ss_pred             EEcCCCCcc---cc-ccc--C----H---HHHhcCCCCcEEEEcCCCcccCHHH
Q 019387          241 SLHPVLDKT---TY-HLI--N----K---ERLATMKKEAILVNCSRGPVIDEVA  281 (342)
Q Consensus       241 ~l~~pl~~~---t~-~li--~----~---~~l~~mk~ga~lINvaRG~~vd~~a  281 (342)
                      +++......   ++ .++  |    .   +.+....|++.+|++  ...+|.-.
T Consensus        73 vi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~--sNPv~~~~  124 (314)
T 1mld_A           73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICII--SNPVNSTI  124 (314)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEEC--SSCHHHHH
T ss_pred             EECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE--CCCcchhH
Confidence            999754321   11 110  1    1   122333578899997  45666654

>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}

Probab=94.65  E-value=0.03  Score=52.30  Aligned_cols=72  Identities=15%  Similarity=0.111  Sum_probs=45.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV~l  242 (342)
                      .+|||||+|.+|+..++.+  .-++++. ++|+.+..+.+++.+.    ....+.   ....+.++++++.+  .|+|++
T Consensus         3 ~rvgiiG~G~~~~~~~~~l--~~~~~lvav~d~~~~~~~~~~~~~----~~~~~~---~~~~~~~~~~ll~~~~vD~V~I   73 (337)
T 3ip3_A            3 LKICVIGSSGHFRYALEGL--DEECSITGIAPGVPEEDLSKLEKA----ISEMNI---KPKKYNNWWEMLEKEKPDILVI   73 (337)
T ss_dssp             EEEEEECSSSCHHHHHTTC--CTTEEEEEEECSSTTCCCHHHHHH----HHTTTC---CCEECSSHHHHHHHHCCSEEEE
T ss_pred             eEEEEEccchhHHHHHHhc--CCCcEEEEEecCCchhhHHHHHHH----HHHcCC---CCcccCCHHHHhcCCCCCEEEE
Confidence            4899999999999666653  4477877 4787763222221111    111111   11245799999975  899999


Q ss_pred             cCCC
Q 019387          243 HPVL  246 (342)
Q Consensus       243 ~~pl  246 (342)
                      |.|.
T Consensus        74 ~tp~   77 (337)
T 3ip3_A           74 NTVF   77 (337)
T ss_dssp             CSSH
T ss_pred             eCCc
Confidence            9984

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=94.60  E-value=0.2  Score=44.54  Aligned_cols=38  Identities=24%  Similarity=0.303  Sum_probs=32.2

Q ss_pred             ccCCCeEEEEec-CH--HHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG~-G~--IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .+.||++.|.|- |.  ||+++|+.|+ ..|++|+..++...
T Consensus         4 ~l~~k~vlVTGasg~~GIG~~ia~~l~-~~G~~V~~~~r~~~   44 (266)
T 3oig_A            4 SLEGRNIVVMGVANKRSIAWGIARSLH-EAGARLIFTYAGER   44 (266)
T ss_dssp             CCTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             ccCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEecCchH
Confidence            578999999997 45  9999999985 67999999887753

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=94.59  E-value=0.17  Score=46.38  Aligned_cols=109  Identities=14%  Similarity=0.121  Sum_probs=72.0

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +.|++|.|+|-+......++.| ...|.+|..+......                 ....+.....++.+.++++|+|+.
T Consensus         5 ~~~mki~v~~~~~~~~~~~~~L-~~~g~~v~~~~~~~~~-----------------~~~~g~~~~~~~~~~~~~~d~ii~   66 (300)
T 2rir_A            5 LTGLKIAVIGGDARQLEIIRKL-TEQQADIYLVGFDQLD-----------------HGFTGAVKCNIDEIPFQQIDSIIL   66 (300)
T ss_dssp             CCSCEEEEESBCHHHHHHHHHH-HHTTCEEEEESCTTSS-----------------CCCTTEEECCGGGSCGGGCSEEEC
T ss_pred             ccCCEEEEECCCHHHHHHHHHH-HhCCCEEEEEeccccc-----------------cccccceeccchHHHHhcCCEEEe
Confidence            5678999999999999999987 6789998876321110                 000111123456777889999987


Q ss_pred             cCCCCc----------ccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 019387          243 HPVLDK----------TTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       243 ~~pl~~----------~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~a  294 (342)
                      ..|...          .+...++++.++.++++.+++ ++    +|..++.+++.+..+.-.
T Consensus        67 ~~~~~~~~~~i~s~~a~~~~~~~~~~l~~~~~l~~i~-~g----~~~~d~~~~~~~~gi~v~  123 (300)
T 2rir_A           67 PVSATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIF-SG----ISNAYLENIAAQAKRKLV  123 (300)
T ss_dssp             CSSCEETTTEECBSSCSSCEECCHHHHHTSCTTCEEE-ES----SCCHHHHHHHHHTTCCEE
T ss_pred             ccccccCCcccccccccCCccchHHHHhhcCCCCEEE-Ee----cCCHHHHHHHHHCCCEEE
Confidence            544321          233448899999999998877 33    266776666666666543

>2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A

Probab=94.58  E-value=0.14  Score=50.08  Aligned_cols=110  Identities=14%  Similarity=0.128  Sum_probs=67.2

Q ss_pred             ccCCCeEEEEecCH----------HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcc-CCC-CccccccCC
Q 019387          162 LLKGQTVGVIGAGR----------IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN-GEQ-PVTWKRASS  229 (342)
Q Consensus       162 ~L~gktvgIvG~G~----------IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~  229 (342)
                      .+.|++|+|+|+.-          -...+++.| ...|++|.+|||......  ....+.. .... +.. ...+....+
T Consensus       326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L-~~~g~~v~~~DP~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~  401 (467)
T 2q3e_A          326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYL-MDEGAHLHIYDPKVPREQ--IVVDLSH-PGVSEDDQVSRLVTISKD  401 (467)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHH--HHHHHCC-------CHHHHHEEECSS
T ss_pred             ccCCCEEEEEeeccCCCCcchhhChHHHHHHHH-HHCCCEEEEEcCccCHHH--Hhhhhcc-ccccccccccCceeecCC
Confidence            47899999999863          678889997 689999999999854321  0011100 0000 000 001223357


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccccCHHH-HhcCCCCcEEEEcCCCcccCH
Q 019387          230 MDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       230 l~~ll~~aDiV~l~~pl~~~t~~li~~~~-l~~mk~ga~lINvaRG~~vd~  279 (342)
                      ..+.++++|.|++++.- ++-+. ++.+. ...|+...+++|. |+- +|.
T Consensus       402 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~~-~~~  448 (467)
T 2q3e_A          402 PYEACDGAHAVVICTEW-DMFKE-LDYERIHKKMLKPAFIFDG-RRV-LDG  448 (467)
T ss_dssp             HHHHHTTCSEEEECSCC-GGGGG-SCHHHHHHHSCSSCEEEES-SCT-TTT
T ss_pred             HHHHHhCCcEEEEecCC-hhhhc-CCHHHHHHhcCCCCEEEeC-CCc-CCc
Confidence            88889999999999863 34333 35444 4567776668876 554 443

>3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A

Probab=94.52  E-value=0.085  Score=47.38  Aligned_cols=109  Identities=17%  Similarity=0.208  Sum_probs=63.9

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC----ccccccCCHHHHhh
Q 019387          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP----VTWKRASSMDEVLR  235 (342)
Q Consensus       161 ~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~ll~  235 (342)
                      ..+.||++.|.|- |.||+++|+.|+ ..|++|++.+++.....+...+..    ...+...    .......++++++.
T Consensus        14 ~~l~~k~~lVTGas~gIG~aia~~l~-~~G~~V~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Dv~~~~~v~~~~~   88 (270)
T 3is3_A           14 GRLDGKVALVTGSGRGIGAAVAVHLG-RLGAKVVVNYANSTKDAEKVVSEI----KALGSDAIAIKADIRQVPEIVKLFD   88 (270)
T ss_dssp             TCCTTCEEEESCTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHHHHHHH----HHTTCCEEEEECCTTSHHHHHHHHH
T ss_pred             CCcCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCCHHHHHHHHHHH----HhcCCcEEEEEcCCCCHHHHHHHHH
Confidence            4689999999986 589999999985 779999987665544333322211    1111110    01111223444443


Q ss_pred             -------cCCEEEEcCCCCcc------c----c-----c-----ccCHHHHhcCCCCcEEEEcCCC
Q 019387          236 -------EADVISLHPVLDKT------T----Y-----H-----LINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       236 -------~aDiV~l~~pl~~~------t----~-----~-----li~~~~l~~mk~ga~lINvaRG  274 (342)
                             .-|+++.+.-....      +    .     +     .+.+..+..|+++..+||++..
T Consensus        89 ~~~~~~g~id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~isS~  154 (270)
T 3is3_A           89 QAVAHFGHLDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTSSN  154 (270)
T ss_dssp             HHHHHHSCCCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEECCT
T ss_pred             HHHHHcCCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEeCc
Confidence                   56999877543211      0    0     0     1124567788888889998753

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=94.52  E-value=0.14  Score=48.27  Aligned_cols=96  Identities=20%  Similarity=0.182  Sum_probs=60.2

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh---hcCCE
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL---READV  239 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll---~~aDi  239 (342)
                      .|++|.|.| .|.||+.+++.+ +.+|++|++.+. .+. .+. ...+       +....-.....++.+.+   ...|+
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla-~~~Ga~Vi~~~~-~~~-~~~-~~~l-------Ga~~v~~~~~~~~~~~~~~~~g~D~  251 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVM-KAWDAHVTAVCS-QDA-SEL-VRKL-------GADDVIDYKSGSVEEQLKSLKPFDF  251 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEEC-GGG-HHH-HHHT-------TCSEEEETTSSCHHHHHHTSCCBSE
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEeC-hHH-HHH-HHHc-------CCCEEEECCchHHHHHHhhcCCCCE
Confidence            589999999 799999999984 899999998873 322 221 1121       11110000112333333   35899


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      |+.|......+    -...+..+++|..+|.++-.
T Consensus       252 vid~~g~~~~~----~~~~~~~l~~~G~iv~~g~~  282 (375)
T 2vn8_A          252 ILDNVGGSTET----WAPDFLKKWSGATYVTLVTP  282 (375)
T ss_dssp             EEESSCTTHHH----HGGGGBCSSSCCEEEESCCS
T ss_pred             EEECCCChhhh----hHHHHHhhcCCcEEEEeCCC
Confidence            99988642111    13456788999999999854

>2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii}

Probab=94.52  E-value=0.04  Score=50.86  Aligned_cols=104  Identities=14%  Similarity=0.069  Sum_probs=62.2

Q ss_pred             eEEEEec-CHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEE
Q 019387          167 TVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISL  242 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l  242 (342)
                      ++.|+|. |++|+.+++.+ ...|++ |..++|.....                 ...+...+.+++++..  ..|++++
T Consensus        15 ~v~V~Gasg~~G~~~~~~l-~~~g~~~V~~VnP~~~g~-----------------~i~G~~vy~sl~el~~~~~~Dv~ii   76 (294)
T 2yv1_A           15 KAIVQGITGRQGSFHTKKM-LECGTKIVGGVTPGKGGQ-----------------NVHGVPVFDTVKEAVKETDANASVI   76 (294)
T ss_dssp             CEEEETTTSHHHHHHHHHH-HHTTCCEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHHCCCEEEE
T ss_pred             EEEEECCCCCHHHHHHHHH-HhCCCeEEEEeCCCCCCc-----------------eECCEeeeCCHHHHhhcCCCCEEEE
Confidence            5788899 99999999987 566776 33555542100                 0113344679999988  8999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCce
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPMF  292 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~-~vd~~aL~~aL~~g~i~  292 (342)
                      ++|- +.+...+. +.+++ +.. .+|..+-|= .-+++.|.++.++..+.
T Consensus        77 ~vp~-~~~~~~v~-ea~~~-Gi~-~vVi~t~G~~~~~~~~l~~~A~~~gi~  123 (294)
T 2yv1_A           77 FVPA-PFAKDAVF-EAIDA-GIE-LIVVITEHIPVHDTMEFVNYAEDVGVK  123 (294)
T ss_dssp             CCCH-HHHHHHHH-HHHHT-TCS-EEEECCSCCCHHHHHHHHHHHHHHTCE
T ss_pred             ccCH-HHHHHHHH-HHHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            9983 22222222 22222 222 244444442 23456788888765553

>2g82_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; G3PDH, glycolysis, oxidoreductase, NAD, rossmann fold; HET: NAD PGE; 1.65A {Thermus aquaticus} SCOP: c.2.1.3 d.81.1.1 PDB: 1cer_O* 1vc2_A*

Probab=94.51  E-value=0.04  Score=51.73  Aligned_cols=30  Identities=27%  Similarity=0.444  Sum_probs=24.7

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDL  197 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~  197 (342)
                      +|||+|+|+||+.+.|.|... +++|.+.+.
T Consensus         2 kVgInG~G~IGr~vlr~l~~~-~~evvaind   31 (331)
T 2g82_O            2 KVGINGFGRIGRQVFRILHSR-GVEVALIND   31 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCCEEEEEC
T ss_pred             EEEEECcCHHHHHHHHHHHhC-CCEEEEEec
Confidence            799999999999999987544 888886543

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=94.50  E-value=0.052  Score=50.66  Aligned_cols=93  Identities=13%  Similarity=0.117  Sum_probs=60.6

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHH----HHh--h
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMD----EVL--R  235 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~----~ll--~  235 (342)
                      .|++|.|+|. |.||+.+++.+ +.+|++|++.+++++.. +.. ..+       +.... ... ..++.    ++.  .
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a-~~~G~~Vi~~~~~~~~~-~~~-~~~-------ga~~~~d~~-~~~~~~~~~~~~~~~  234 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIA-KLFGARVIATAGSEDKL-RRA-KAL-------GADETVNYT-HPDWPKEVRRLTGGK  234 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHH-HHTTCEEEEEESSHHHH-HHH-HHH-------TCSEEEETT-STTHHHHHHHHTTTT
T ss_pred             CCCEEEEECCCchHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH-Hhc-------CCCEEEcCC-cccHHHHHHHHhCCC
Confidence            4889999999 99999999985 78999999999876543 111 111       11100 010 11222    222  2


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ..|+|+.+.. . +    .-...++.++++..+|.++.
T Consensus       235 ~~d~vi~~~g-~-~----~~~~~~~~l~~~G~~v~~g~  266 (343)
T 2eih_A          235 GADKVVDHTG-A-L----YFEGVIKATANGGRIAIAGA  266 (343)
T ss_dssp             CEEEEEESSC-S-S----SHHHHHHHEEEEEEEEESSC
T ss_pred             CceEEEECCC-H-H----HHHHHHHhhccCCEEEEEec
Confidence            5799998876 2 2    23566788888989998874

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.49  E-value=0.046  Score=50.60  Aligned_cols=93  Identities=11%  Similarity=0.142  Sum_probs=60.1

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCH-HHHh-----h
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSM-DEVL-----R  235 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l-~~ll-----~  235 (342)
                      .|++|.|.| .|.||+.+++.+ +..|++|++.+++++.. +.. ..+       +.... ... ..++ +++.     .
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~V~~~~~~~~~~-~~~-~~~-------g~~~~~~~~-~~~~~~~~~~~~~~~  208 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWA-KALGAKLIGTVGTAQKA-QSA-LKA-------GAWQVINYR-EEDLVERLKEITGGK  208 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHH-HHHTCEEEEEESSHHHH-HHH-HHH-------TCSEEEETT-TSCHHHHHHHHTTTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-HHH-HHc-------CCCEEEECC-CccHHHHHHHHhCCC
Confidence            488999999 799999999985 78899999999876432 111 111       11100 010 1122 2222     1


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ..|+++.+..  .+    .-...++.++++..+|.++-
T Consensus       209 ~~D~vi~~~g--~~----~~~~~~~~l~~~G~iv~~g~  240 (327)
T 1qor_A          209 KVRVVYDSVG--RD----TWERSLDCLQRRGLMVSFGN  240 (327)
T ss_dssp             CEEEEEECSC--GG----GHHHHHHTEEEEEEEEECCC
T ss_pred             CceEEEECCc--hH----HHHHHHHHhcCCCEEEEEec
Confidence            4799998875  22    23567888999999999874

>3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A

Probab=94.48  E-value=0.04  Score=52.19  Aligned_cols=37  Identities=24%  Similarity=0.396  Sum_probs=31.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~  198 (342)
                      ..|.+++|.|||.|.+|.++|+.|+ ..|. ++..+|..
T Consensus       114 ~~L~~~~VlvvG~GglGs~va~~La-~aGvg~i~lvD~D  151 (353)
T 3h5n_A          114 DKLKNAKVVILGCGGIGNHVSVILA-TSGIGEIILIDND  151 (353)
T ss_dssp             HHHHTCEEEEECCSHHHHHHHHHHH-HHTCSEEEEEECC
T ss_pred             HHHhCCeEEEECCCHHHHHHHHHHH-hCCCCeEEEECCC
Confidence            4688999999999999999999985 5566 78888864

>1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A*

Probab=94.47  E-value=0.046  Score=50.15  Aligned_cols=62  Identities=27%  Similarity=0.352  Sum_probs=42.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHh---cCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCE
Q 019387          166 QTVGVIGAGRIGSAYARMMVE---GFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADV  239 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~---afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDi  239 (342)
                      .+|||||+|.||+..++.+.+   .-++++. ++|+....             ...     +.. ..++++++.  +.|+
T Consensus         8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~~a-------------~~~-----g~~-~~~~~ell~~~~vD~   68 (294)
T 1lc0_A            8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRELG-------------SLD-----EVR-QISLEDALRSQEIDV   68 (294)
T ss_dssp             EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSCCC-------------EET-----TEE-BCCHHHHHHCSSEEE
T ss_pred             ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchHHH-------------HHc-----CCC-CCCHHHHhcCCCCCE
Confidence            389999999999999888632   2367766 46654211             000     111 368999997  6799


Q ss_pred             EEEcCCC
Q 019387          240 ISLHPVL  246 (342)
Q Consensus       240 V~l~~pl  246 (342)
                      |++|+|.
T Consensus        69 V~i~tp~   75 (294)
T 1lc0_A           69 AYICSES   75 (294)
T ss_dssp             EEECSCG
T ss_pred             EEEeCCc
Confidence            9999984

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=94.41  E-value=0.056  Score=50.77  Aligned_cols=93  Identities=10%  Similarity=0.008  Sum_probs=60.4

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC-ccccccCCH-HHH---h--h
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP-VTWKRASSM-DEV---L--R  235 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l-~~l---l--~  235 (342)
                      .|++|.|.| .|.||..+++.+ +..|++|++.+++++.. +.. ..+       +... .... ..++ +++   .  .
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a-~~~Ga~Vi~~~~~~~~~-~~~-~~~-------g~~~~~~~~-~~~~~~~~~~~~~~~  230 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLT-RMAGAIPLVTAGSQKKL-QMA-EKL-------GAAAGFNYK-KEDFSEATLKFTKGA  230 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHH-HHH-------TCSEEEETT-TSCHHHHHHHHTTTS
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHcCCEEEEEeCCHHHH-HHH-HHc-------CCcEEEecC-ChHHHHHHHHHhcCC
Confidence            488999999 799999999985 78999999999876532 211 111       1110 0011 1122 222   2  1


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ..|+++.|... +     .-...++.|++|..++.++-
T Consensus       231 ~~d~vi~~~G~-~-----~~~~~~~~l~~~G~iv~~G~  262 (354)
T 2j8z_A          231 GVNLILDCIGG-S-----YWEKNVNCLALDGRWVLYGL  262 (354)
T ss_dssp             CEEEEEESSCG-G-----GHHHHHHHEEEEEEEEECCC
T ss_pred             CceEEEECCCc-h-----HHHHHHHhccCCCEEEEEec
Confidence            47999988763 1     12456888999999999874

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=94.39  E-value=0.076  Score=49.65  Aligned_cols=93  Identities=12%  Similarity=0.042  Sum_probs=59.8

Q ss_pred             CCeEEEE-ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh------hcC
Q 019387          165 GQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------REA  237 (342)
Q Consensus       165 gktvgIv-G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll------~~a  237 (342)
                      +++|.|. |.|.||..+++.+ +.+|++|++.+++.++....  ..+       +....-.....++.+.+      ...
T Consensus       165 ~~~vli~gg~g~vG~~a~qla-~~~Ga~Vi~~~~~~~~~~~~--~~~-------Ga~~~~~~~~~~~~~~v~~~~~~~g~  234 (349)
T 3pi7_A          165 EKAFVMTAGASQLCKLIIGLA-KEEGFRPIVTVRRDEQIALL--KDI-------GAAHVLNEKAPDFEATLREVMKAEQP  234 (349)
T ss_dssp             CSEEEESSTTSHHHHHHHHHH-HHHTCEEEEEESCGGGHHHH--HHH-------TCSEEEETTSTTHHHHHHHHHHHHCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHHHHH--HHc-------CCCEEEECCcHHHHHHHHHHhcCCCC
Confidence            3577665 9999999999984 89999999999876543111  111       11111000112333322      269


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+|+-|... +.    + ...+..++++..+|.++.
T Consensus       235 D~vid~~g~-~~----~-~~~~~~l~~~G~iv~~G~  264 (349)
T 3pi7_A          235 RIFLDAVTG-PL----A-SAIFNAMPKRARWIIYGR  264 (349)
T ss_dssp             CEEEESSCH-HH----H-HHHHHHSCTTCEEEECCC
T ss_pred             cEEEECCCC-hh----H-HHHHhhhcCCCEEEEEec
Confidence            999998763 21    1 667899999999999973

>2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis}

Probab=94.38  E-value=0.15  Score=49.28  Aligned_cols=106  Identities=18%  Similarity=0.250  Sum_probs=67.5

Q ss_pred             cCCCeEEEEe-----cCH---HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh
Q 019387          163 LKGQTVGVIG-----AGR---IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (342)
Q Consensus       163 L~gktvgIvG-----~G~---IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll  234 (342)
                      |.|++|+|||     +|+   +.++.+..+ ..||++|.+..|..-...+...+.........|   ..+....++++++
T Consensus       186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l-~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G---~~v~~~~d~~eav  261 (418)
T 2yfk_A          186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLM-TRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFG---GNFTKTNSMAEAF  261 (418)
T ss_dssp             GTTCEEEEECCCCSSSCCCSHHHHHHHHHH-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHS---SEEEEESCHHHHH
T ss_pred             cCCCEEEEEeccccccCccchHHHHHHHHH-HHcCCEEEEECCccccCCHHHHHHHHHHHHHcC---CEEEEEcCHHHHh
Confidence            7899999998     454   999999986 579999999887632111111110000011111   1233457899999


Q ss_pred             hcCCEEEEcCCCC----------------c-------------c--cccccCHHHHhcCCC-CcEEEEcC
Q 019387          235 READVISLHPVLD----------------K-------------T--TYHLINKERLATMKK-EAILVNCS  272 (342)
Q Consensus       235 ~~aDiV~l~~pl~----------------~-------------~--t~~li~~~~l~~mk~-ga~lINva  272 (342)
                      +++|+|..-+-..                +             +  ...-++.+.++.+|+ +++|.-+.
T Consensus       262 ~~ADVVytd~W~sm~~Q~ER~~~~~~g~~~~~~~~~~~~~~~~~~~~~y~vt~elm~~ak~~dai~MHcL  331 (418)
T 2yfk_A          262 KDADVVYPKSWAPFAAMEKRTELYGNGDQAGIDQLEQELLSQNKKHKDWECTEELMKTTKDGKALYMHCL  331 (418)
T ss_dssp             TTCSEEEECCCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHGGGTTCCBCHHHHHTSGGGCCEECCCS
T ss_pred             cCCCEEEEccccchhHHHHHhhhhccccchhhhhhhhhhhhHHHHHhhcCCCHHHHHhcCCCCeEEECCC
Confidence            9999998753210                0             0  124568899999986 78887664

>3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A*

Probab=94.38  E-value=0.067  Score=49.66  Aligned_cols=78  Identities=19%  Similarity=0.158  Sum_probs=47.7

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHH--HHHhhhhhhhhccCCCCc--cccccCCHHHHhh--c
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLE--KFVTAYGQFLKANGEQPV--TWKRASSMDEVLR--E  236 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~--~  236 (342)
                      ..++|.|.|- |.||+.+++.|+ ..|.+|++.++......+  .....+    ...+....  ......++.++++  +
T Consensus         9 ~~~~IlVtGatG~iG~~l~~~L~-~~g~~V~~l~R~~~~~~~~~~~~~~l----~~~~v~~~~~Dl~d~~~l~~~~~~~~   83 (346)
T 3i6i_A            9 PKGRVLIAGATGFIGQFVATASL-DAHRPTYILARPGPRSPSKAKIFKAL----EDKGAIIVYGLINEQEAMEKILKEHE   83 (346)
T ss_dssp             --CCEEEECTTSHHHHHHHHHHH-HTTCCEEEEECSSCCCHHHHHHHHHH----HHTTCEEEECCTTCHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCcHHHHHHHHHHH-HCCCCEEEEECCCCCChhHHHHHHHH----HhCCcEEEEeecCCHHHHHHHHhhCC
Confidence            3578999998 999999999984 668999999887621111  100000    00111111  1112346778888  9


Q ss_pred             CCEEEEcCCC
Q 019387          237 ADVISLHPVL  246 (342)
Q Consensus       237 aDiV~l~~pl  246 (342)
                      +|+|+.+...
T Consensus        84 ~d~Vi~~a~~   93 (346)
T 3i6i_A           84 IDIVVSTVGG   93 (346)
T ss_dssp             CCEEEECCCG
T ss_pred             CCEEEECCch
Confidence            9999888764

>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A

Probab=94.37  E-value=0.074  Score=49.35  Aligned_cols=106  Identities=22%  Similarity=0.213  Sum_probs=60.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .+|+|+|.|.+|.+++..|+. ...-++..+|...+. .+........-. ... .+..+.. .+ .+.+++||+|+++.
T Consensus         1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k-~~g~a~dl~~~~-~~~-~~~~v~~-~~-~~a~~~aD~Vii~a   75 (310)
T 2xxj_A            1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKL-AQAHAEDILHAT-PFA-HPVWVWA-GS-YGDLEGARAVVLAA   75 (310)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHH-HHHHHHHHHTTG-GGS-CCCEEEE-CC-GGGGTTEEEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhH-HHHHHHHHHHhH-hhc-CCeEEEE-CC-HHHhCCCCEEEECC
Confidence            379999999999999988753 233589999997532 222111111000 000 1112221 33 55689999999998


Q ss_pred             CCCcccccc-------cCH-------HHHhcCCCCcEEEEcCCCcccCH
Q 019387          245 VLDKTTYHL-------INK-------ERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       245 pl~~~t~~l-------i~~-------~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      +.. ...++       .|.       +.+....|.+.++|++  ..+|.
T Consensus        76 g~~-~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~~  121 (310)
T 2xxj_A           76 GVA-QRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT--NPVDV  121 (310)
T ss_dssp             CCC-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHHH
T ss_pred             CCC-CCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec--CchHH
Confidence            653 32222       111       2223336889999984  44444

>3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A}

Probab=94.34  E-value=0.025  Score=49.66  Aligned_cols=102  Identities=11%  Similarity=0.116  Sum_probs=62.2

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhcCC
Q 019387          163 LKGQTVGVIG-AGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREAD  238 (342)
Q Consensus       163 L~gktvgIvG-~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~aD  238 (342)
                      ...++|.|.| -|.||+.+++.| ..-| .+|.++++.++...+.         ...+...  .......+++++++++|
T Consensus        21 ~~mk~vlVtGatG~iG~~l~~~L-~~~G~~~V~~~~R~~~~~~~~---------~~~~~~~~~~Dl~d~~~~~~~~~~~D   90 (236)
T 3qvo_A           21 GHMKNVLILGAGGQIARHVINQL-ADKQTIKQTLFARQPAKIHKP---------YPTNSQIIMGDVLNHAALKQAMQGQD   90 (236)
T ss_dssp             -CCEEEEEETTTSHHHHHHHHHH-TTCTTEEEEEEESSGGGSCSS---------CCTTEEEEECCTTCHHHHHHHHTTCS
T ss_pred             CcccEEEEEeCCcHHHHHHHHHH-HhCCCceEEEEEcChhhhccc---------ccCCcEEEEecCCCHHHHHHHhcCCC
Confidence            3468999999 799999999998 5778 8999999886532100         0000000  01112345778899999


Q ss_pred             EEEEcCCCCcccccccCHHHHhcCCC-C-cEEEEcCCCcc
Q 019387          239 VISLHPVLDKTTYHLINKERLATMKK-E-AILVNCSRGPV  276 (342)
Q Consensus       239 iV~l~~pl~~~t~~li~~~~l~~mk~-g-a~lINvaRG~~  276 (342)
                      +|+.+......  .......+..|++ | ..||+++-...
T Consensus        91 ~vv~~a~~~~~--~~~~~~~~~~~~~~~~~~iV~iSS~~~  128 (236)
T 3qvo_A           91 IVYANLTGEDL--DIQANSVIAAMKACDVKRLIFVLSLGI  128 (236)
T ss_dssp             EEEEECCSTTH--HHHHHHHHHHHHHTTCCEEEEECCCCC
T ss_pred             EEEEcCCCCch--hHHHHHHHHHHHHcCCCEEEEEeccee
Confidence            99988764321  1112344555532 2 47888876443

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=94.33  E-value=0.04  Score=51.77  Aligned_cols=94  Identities=13%  Similarity=0.118  Sum_probs=59.7

Q ss_pred             CCCeEEEEecCHHHHHH-HHHHH-hcCCcE-EEEEcCCch---hHHHHHHhhhhhhhhccCCCCccccccCC---HHHHh
Q 019387          164 KGQTVGVIGAGRIGSAY-ARMMV-EGFKMN-LIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASS---MDEVL  234 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~v-A~~l~-~afg~~-V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~ll  234 (342)
                      .+++|.|+|.|.||... ++. + +.+|++ |++.+++++   +. +. ...++       ...... ...+   +.++-
T Consensus       172 ~~~~VlV~GaG~vG~~a~iql-a~k~~Ga~~Vi~~~~~~~~~~~~-~~-~~~lG-------a~~v~~-~~~~~~~i~~~~  240 (357)
T 2b5w_A          172 DPSSAFVLGNGSLGLLTLAML-KVDDKGYENLYCLGRRDRPDPTI-DI-IEELD-------ATYVDS-RQTPVEDVPDVY  240 (357)
T ss_dssp             CCCEEEEECCSHHHHHHHHHH-HHCTTCCCEEEEEECCCSSCHHH-HH-HHHTT-------CEEEET-TTSCGGGHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HHHHcCCcEEEEEeCCcccHHHH-HH-HHHcC-------CcccCC-CccCHHHHHHhC
Confidence            35899999999999999 887 7 899997 999998765   32 11 11221       111100 1112   22321


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ...|+|+-+... +.+    -...++.++++..++.++-
T Consensus       241 gg~Dvvid~~g~-~~~----~~~~~~~l~~~G~iv~~g~  274 (357)
T 2b5w_A          241 EQMDFIYEATGF-PKH----AIQSVQALAPNGVGALLGV  274 (357)
T ss_dssp             CCEEEEEECSCC-HHH----HHHHHHHEEEEEEEEECCC
T ss_pred             CCCCEEEECCCC-hHH----HHHHHHHHhcCCEEEEEeC
Confidence            147999988763 211    2456788899999998874

>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*

Probab=94.32  E-value=0.039  Score=52.67  Aligned_cols=68  Identities=18%  Similarity=0.218  Sum_probs=46.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcC--CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~af--g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      -.+|||||.| +|+.-++.+ +..  ++++. ++|+..+. .+++-+.|       +     +..+.++++++.+.|+++
T Consensus         7 ~~rv~VvG~G-~g~~h~~a~-~~~~~~~elvav~~~~~~~-a~~~a~~~-------g-----v~~~~~~~~l~~~~D~v~   71 (372)
T 4gmf_A            7 KQRVLIVGAK-FGEMYLNAF-MQPPEGLELVGLLAQGSAR-SRELAHAF-------G-----IPLYTSPEQITGMPDIAC   71 (372)
T ss_dssp             CEEEEEECST-TTHHHHHTT-SSCCTTEEEEEEECCSSHH-HHHHHHHT-------T-----CCEESSGGGCCSCCSEEE
T ss_pred             CCEEEEEehH-HHHHHHHHH-HhCCCCeEEEEEECCCHHH-HHHHHHHh-------C-----CCEECCHHHHhcCCCEEE
Confidence            4589999999 798777765 344  67877 57887653 33332222       2     224578999999999999


Q ss_pred             EcCCCC
Q 019387          242 LHPVLD  247 (342)
Q Consensus       242 l~~pl~  247 (342)
                      +++|..
T Consensus        72 i~~p~~   77 (372)
T 4gmf_A           72 IVVRST   77 (372)
T ss_dssp             ECCC--
T ss_pred             EECCCc
Confidence            999853

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=94.29  E-value=0.066  Score=50.03  Aligned_cols=93  Identities=16%  Similarity=0.210  Sum_probs=58.5

Q ss_pred             CCCeEEEE-ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-----cC
Q 019387          164 KGQTVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvgIv-G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-----~a  237 (342)
                      .|++|.|+ |.|.||...++.+ +.+|++|++.++++++. +. ...+       +... .+....++.+.+.     ..
T Consensus       150 ~g~~VlV~gg~G~vG~~a~qla-~~~Ga~Vi~~~~~~~~~-~~-~~~l-------Ga~~-vi~~~~~~~~~~~~~~~~g~  218 (346)
T 3fbg_A          150 EGKTLLIINGAGGVGSIATQIA-KAYGLRVITTASRNETI-EW-TKKM-------GADI-VLNHKESLLNQFKTQGIELV  218 (346)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHH-HHTTCEEEEECCSHHHH-HH-HHHH-------TCSE-EECTTSCHHHHHHHHTCCCE
T ss_pred             CCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-HH-HHhc-------CCcE-EEECCccHHHHHHHhCCCCc
Confidence            58999999 7999999999984 89999999999876542 11 1111       1111 1111123333332     47


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      |+|+.|... +.    .-...++.++++..+|.++
T Consensus       219 Dvv~d~~g~-~~----~~~~~~~~l~~~G~iv~~~  248 (346)
T 3fbg_A          219 DYVFCTFNT-DM----YYDDMIQLVKPRGHIATIV  248 (346)
T ss_dssp             EEEEESSCH-HH----HHHHHHHHEEEEEEEEESS
T ss_pred             cEEEECCCc-hH----HHHHHHHHhccCCEEEEEC
Confidence            888887752 11    1134567788888887764

>2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A*

Probab=94.28  E-value=0.048  Score=49.11  Aligned_cols=37  Identities=22%  Similarity=0.262  Sum_probs=32.4

Q ss_pred             cCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       163 L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      +.||++.|.|-   |.||+.+|+.|+ ..|++|++.+++.+
T Consensus         4 l~~k~vlVTGas~~~gIG~~~a~~l~-~~G~~V~~~~r~~~   43 (275)
T 2pd4_A            4 LKGKKGLIVGVANNKSIAYGIAQSCF-NQGATLAFTYLNES   43 (275)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHH-TTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            67899999997   699999999985 67999999988764

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=94.28  E-value=0.057  Score=50.29  Aligned_cols=95  Identities=18%  Similarity=0.225  Sum_probs=61.1

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhh-----c
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLR-----E  236 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~-----~  236 (342)
                      .|++|.|.|. |.||+.+++.+ +..|++|++.+++.+.. +.....+       +.... ......++.+.+.     .
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a-~~~G~~V~~~~~~~~~~-~~~~~~~-------g~~~~~d~~~~~~~~~~~~~~~~~~  225 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLA-KMMGCYVVGSAGSKEKV-DLLKTKF-------GFDDAFNYKEESDLTAALKRCFPNG  225 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHHTS-------CCSEEEETTSCSCSHHHHHHHCTTC
T ss_pred             CCCEEEEECCCcHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHHHHHc-------CCceEEecCCHHHHHHHHHHHhCCC
Confidence            4889999997 99999999985 78999999999876432 1111011       11100 1111123433332     4


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+|+.+... +     .-...+..+++|..++.++-
T Consensus       226 ~d~vi~~~g~-~-----~~~~~~~~l~~~G~~v~~G~  256 (345)
T 2j3h_A          226 IDIYFENVGG-K-----MLDAVLVNMNMHGRIAVCGM  256 (345)
T ss_dssp             EEEEEESSCH-H-----HHHHHHTTEEEEEEEEECCC
T ss_pred             CcEEEECCCH-H-----HHHHHHHHHhcCCEEEEEcc
Confidence            7999988752 1     23556788899999998864

>2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus}

Probab=94.25  E-value=0.043  Score=51.60  Aligned_cols=101  Identities=13%  Similarity=0.131  Sum_probs=57.3

Q ss_pred             eEEEEecCHHHHHHHHHHHhcC---------CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGF---------KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~af---------g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~  236 (342)
                      +|||+|+|.||+.+++.+. ..         +++|. ++|++.... .             +. +. ....+++++++ +
T Consensus         5 rvgIiG~G~VG~~~~~~l~-~~~~~l~~~g~~~~lvaV~d~~~~~~-~-------------~~-~~-~~~~~d~~~ll-~   66 (332)
T 2ejw_A            5 KIALLGGGTVGSAFYNLVL-ERAEELSAFGVVPRFLGVLVRDPRKP-R-------------AI-PQ-ELLRAEPFDLL-E   66 (332)
T ss_dssp             EEEEECCSHHHHHHHHHHH-HTGGGGGGGTEEEEEEEEECSCTTSC-C-------------SS-CG-GGEESSCCCCT-T
T ss_pred             EEEEEcCCHHHHHHHHHHH-hChhhHhhcCCCEEEEEEEECCHHHh-h-------------cc-Cc-ccccCCHHHHh-C
Confidence            7999999999999998863 33         46765 467654321 0             00 00 11345777888 8


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHHHHHcC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVEHLKQN  289 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~aL~~g  289 (342)
                      .|+|+.|+|......    .-..+.++.|.-+|...-..+ -.-+.|.++.++.
T Consensus        67 iDvVve~t~~~~~a~----~~~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~  116 (332)
T 2ejw_A           67 ADLVVEAMGGVEAPL----RLVLPALEAGIPLITANKALLAEAWESLRPFAEEG  116 (332)
T ss_dssp             CSEEEECCCCSHHHH----HHHHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred             CCEEEECCCCcHHHH----HHHHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence            999999988532111    111234555555555322222 2345556555544

>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A

Probab=94.24  E-value=0.039  Score=51.39  Aligned_cols=91  Identities=12%  Similarity=0.179  Sum_probs=56.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc--ccCCHHHH-hhcCCEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDEV-LREADVIS  241 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~l-l~~aDiV~  241 (342)
                      .+++.|+|+|.+|+.+|+.| ...|. |.+.|+.++.. + ...        .+......+  ....|+++ +++||.|+
T Consensus       115 ~~~viI~G~G~~g~~l~~~L-~~~g~-v~vid~~~~~~-~-~~~--------~~~~~i~gd~~~~~~L~~a~i~~a~~vi  182 (336)
T 1lnq_A          115 SRHVVICGWSESTLECLREL-RGSEV-FVLAEDENVRK-K-VLR--------SGANFVHGDPTRVSDLEKANVRGARAVI  182 (336)
T ss_dssp             -CEEEEESCCHHHHHHHTTG-GGSCE-EEEESCGGGHH-H-HHH--------TTCEEEESCTTSHHHHHHTCSTTEEEEE
T ss_pred             cCCEEEECCcHHHHHHHHHH-HhCCc-EEEEeCChhhh-h-HHh--------CCcEEEEeCCCCHHHHHhcChhhccEEE
Confidence            56899999999999999997 67888 99999887542 2 111        111111000  11234444 67899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEE
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILV  269 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lI  269 (342)
                      ++.+.+  ..++.-....+.+.+...+|
T Consensus       183 ~~~~~d--~~n~~~~~~ar~~~~~~~ii  208 (336)
T 1lnq_A          183 VDLESD--SETIHCILGIRKIDESVRII  208 (336)
T ss_dssp             ECCSSH--HHHHHHHHHHHTTCTTSEEE
T ss_pred             EcCCcc--HHHHHHHHHHHHHCCCCeEE
Confidence            998743  34455555566666653333

>3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A*

Probab=94.24  E-value=0.076  Score=48.51  Aligned_cols=39  Identities=15%  Similarity=0.215  Sum_probs=34.1

Q ss_pred             cccCCCeEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~L~gktvgIvG~G---~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      ..+.||++.|.|-+   .||+.+|+.|+ ..|++|++.+++.+
T Consensus        26 ~~l~~k~vlVTGasg~~GIG~~ia~~la-~~G~~V~~~~r~~~   67 (296)
T 3k31_A           26 MLMEGKKGVIIGVANDKSLAWGIAKAVC-AQGAEVALTYLSET   67 (296)
T ss_dssp             CTTTTCEEEEECCCSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             hccCCCEEEEEeCCCCCCHHHHHHHHHH-HCCCEEEEEeCChH
Confidence            46899999999986   89999999985 67999999988754

>1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A*

Probab=94.22  E-value=0.14  Score=49.69  Aligned_cols=98  Identities=22%  Similarity=0.164  Sum_probs=60.0

Q ss_pred             CCCeEEEEecC----------HHHHHHHHHHHhcCCcEEEEEcCCchhHHHH--HHhhhhhhhhccCCCCccccccCCHH
Q 019387          164 KGQTVGVIGAG----------RIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQPVTWKRASSMD  231 (342)
Q Consensus       164 ~gktvgIvG~G----------~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (342)
                      .|++|+|+|+.          .-...+++.| ...|++|.+|||..+.. ..  ....|+   .. ...........++.
T Consensus       312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L-~~~g~~v~~~DP~~~~~-~~~~~~~~~~---~~-~~~~~~~~~~~~~~  385 (436)
T 1mv8_A          312 DTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYA-RVHGANKEYI---ES-KIPHVSSLLVSDLD  385 (436)
T ss_dssp             SCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHH-TTSSSCHHHH---HH-TSHHHHTTBCSCHH
T ss_pred             cCCEEEEEccccCCCCCccccCcHHHHHHHH-HHCCCEEEEECCCCChh-hccchhhhhc---cc-ccccccccccCCHH
Confidence            68999999997          5678899997 68999999999974321 10  000010   00 00000001235788


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       232 ~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      +.++++|+|+++..- ++-+.+ +   .+.|+ +.+++|+ |+
T Consensus       386 ~~~~~~d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~-r~  421 (436)
T 1mv8_A          386 EVVASSDVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL-VG  421 (436)
T ss_dssp             HHHHHCSEEEECSCC-GGGHHH-H---HSCCT-TCEEEES-SS
T ss_pred             HHHhCCcEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC-CC
Confidence            899999999999863 222211 1   34566 5788887 44

>1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A*

Probab=94.21  E-value=0.02  Score=52.29  Aligned_cols=74  Identities=20%  Similarity=0.144  Sum_probs=45.1

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|+|+|+ |.||+.+++.+...-|+++. ++|+.+......   ..   ....+....++...+++++++.++|+|+-+
T Consensus         6 mkV~V~Ga~G~mG~~~~~~~~~~~~~elva~~d~~~~~~~g~---d~---~~~~g~~~~~v~~~~dl~~~l~~~DvVIDf   79 (273)
T 1dih_A            6 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DA---GELAGAGKTGVTVQSSLDAVKDDFDVFIDF   79 (273)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CT---TCSSSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCchhhhhh---hH---HHHcCCCcCCceecCCHHHHhcCCCEEEEc
Confidence            48999999 99999999976445678877 677654321000   00   000011111222346788888899999955


Q ss_pred             CC
Q 019387          244 PV  245 (342)
Q Consensus       244 ~p  245 (342)
                      .+
T Consensus        80 t~   81 (273)
T 1dih_A           80 TR   81 (273)
T ss_dssp             SC
T ss_pred             CC
Confidence            53

>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}

Probab=94.20  E-value=0.14  Score=43.74  Aligned_cols=95  Identities=11%  Similarity=0.059  Sum_probs=57.8

Q ss_pred             eEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc--cccccCCHHHHhhcCCEEEEc
Q 019387          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       167 tvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      +|.|.| -|.||+.+++.| ..-|.+|.+.+++++...+. .         .+....  ......+  +.+.++|+|+.+
T Consensus         2 kvlVtGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~-~---------~~~~~~~~D~~d~~~--~~~~~~d~vi~~   68 (221)
T 3ew7_A            2 KIGIIGATGRAGSRILEEA-KNRGHEVTAIVRNAGKITQT-H---------KDINILQKDIFDLTL--SDLSDQNVVVDA   68 (221)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEEEESCSHHHHHH-C---------SSSEEEECCGGGCCH--HHHTTCSEEEEC
T ss_pred             eEEEEcCCchhHHHHHHHH-HhCCCEEEEEEcCchhhhhc-c---------CCCeEEeccccChhh--hhhcCCCEEEEC
Confidence            689999 599999999998 46799999999987542110 0         011111  1111112  678899999998


Q ss_pred             CCCCccccc---ccCHHHHhcCCC--CcEEEEcCCC
Q 019387          244 PVLDKTTYH---LINKERLATMKK--EAILVNCSRG  274 (342)
Q Consensus       244 ~pl~~~t~~---li~~~~l~~mk~--ga~lINvaRG  274 (342)
                      ......+..   ......+..|++  ...+|+++..
T Consensus        69 ag~~~~~~~~~~~~~~~l~~a~~~~~~~~~v~~SS~  104 (221)
T 3ew7_A           69 YGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA  104 (221)
T ss_dssp             CCSSTTTTTSHHHHHHHHHHHHCSCCSSEEEEECCC
T ss_pred             CcCCccccchHHHHHHHHHHHHHhcCCceEEEEecc
Confidence            865433211   112345555653  3577777643

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=94.16  E-value=0.057  Score=50.71  Aligned_cols=94  Identities=15%  Similarity=0.198  Sum_probs=60.4

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHH----HHhh--
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMD----EVLR--  235 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~----~ll~--  235 (342)
                      .|++|.|.|. |.||+.+++.+ +..|++|++.+++++...  ....+       +.... ... ..++.    +...  
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a-~~~Ga~Vi~~~~~~~~~~--~~~~~-------ga~~~~d~~-~~~~~~~~~~~~~~~  238 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIA-RAYGLKILGTAGTEEGQK--IVLQN-------GAHEVFNHR-EVNYIDKIKKYVGEK  238 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHH-HHTTCEEEEEESSHHHHH--HHHHT-------TCSEEEETT-STTHHHHHHHHHCTT
T ss_pred             CcCEEEEECCCChHHHHHHHHH-HHCCCEEEEEeCChhHHH--HHHHc-------CCCEEEeCC-CchHHHHHHHHcCCC
Confidence            4889999998 99999999985 789999999998765432  11111       11100 011 11222    2222  


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      ..|+|+.+...  .   .+ ...++.++++..+|.++..
T Consensus       239 ~~D~vi~~~G~--~---~~-~~~~~~l~~~G~iv~~g~~  271 (351)
T 1yb5_A          239 GIDIIIEMLAN--V---NL-SKDLSLLSHGGRVIVVGSR  271 (351)
T ss_dssp             CEEEEEESCHH--H---HH-HHHHHHEEEEEEEEECCCC
T ss_pred             CcEEEEECCCh--H---HH-HHHHHhccCCCEEEEEecC
Confidence            57999888752  1   12 4567888999999988743

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=94.16  E-value=0.22  Score=44.69  Aligned_cols=36  Identities=19%  Similarity=0.275  Sum_probs=31.8

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~  198 (342)
                      .+.||++.|.|- |.||+.+|+.|+ .-|++|++.++.
T Consensus         7 ~l~gk~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~~~   43 (287)
T 3pxx_A            7 RVQDKVVLVTGGARGQGRSHAVKLA-EEGADIILFDIC   43 (287)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECC
T ss_pred             ccCCCEEEEeCCCChHHHHHHHHHH-HCCCeEEEEccc
Confidence            588999999996 589999999985 779999999876

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=94.12  E-value=0.064  Score=50.03  Aligned_cols=93  Identities=15%  Similarity=0.140  Sum_probs=58.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHH----HHhh--c
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMD----EVLR--E  236 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~ll~--~  236 (342)
                      .|++|.|+|.|.+|...++. ++.+ |.+|++.++++++...  ...+       +.... +....++.    ++..  .
T Consensus       171 ~g~~vlv~GaG~vG~~a~ql-a~~~g~~~Vi~~~~~~~~~~~--~~~l-------Ga~~~-i~~~~~~~~~v~~~t~g~g  239 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQI-LRAVSAARVIAVDLDDDRLAL--AREV-------GADAA-VKSGAGAADAIRELTGGQG  239 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHHCCCEEEEEESCHHHHHH--HHHT-------TCSEE-EECSTTHHHHHHHHHGGGC
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCEEEEEcCCHHHHHH--HHHc-------CCCEE-EcCCCcHHHHHHHHhCCCC
Confidence            48899999999999999998 4777 7899999987754311  1111       21111 11111222    2222  5


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .|+|+-+.... .    .-...++.++++..++.++
T Consensus       240 ~d~v~d~~G~~-~----~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          240 ATAVFDFVGAQ-S----TIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             EEEEEESSCCH-H----HHHHHHHHEEEEEEEEECS
T ss_pred             CeEEEECCCCH-H----HHHHHHHHHhcCCEEEEEC
Confidence            89999888642 1    1234566777777777775

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=94.07  E-value=0.076  Score=49.25  Aligned_cols=93  Identities=13%  Similarity=0.125  Sum_probs=59.7

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCH----HHHh--h
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSM----DEVL--R  235 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l----~~ll--~  235 (342)
                      .|++|.|.|. |.||+.+++.+ +..|++|++.+++.+.. +.. ..+       +.... ... ..++    .+..  .
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~a-~~~G~~Vi~~~~~~~~~-~~~-~~~-------g~~~~~d~~-~~~~~~~i~~~~~~~  213 (333)
T 1wly_A          145 PGDYVLIHAAAGGMGHIMVPWA-RHLGATVIGTVSTEEKA-ETA-RKL-------GCHHTINYS-TQDFAEVVREITGGK  213 (333)
T ss_dssp             TTCEEEETTTTSTTHHHHHHHH-HHTTCEEEEEESSHHHH-HHH-HHH-------TCSEEEETT-TSCHHHHHHHHHTTC
T ss_pred             CCCEEEEECCccHHHHHHHHHH-HHCCCEEEEEeCCHHHH-HHH-HHc-------CCCEEEECC-CHHHHHHHHHHhCCC
Confidence            4889999995 99999999985 78999999999876432 111 111       11100 010 1122    2222  2


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ..|+++.+...      -.-...++.++++..+|.++-
T Consensus       214 ~~d~vi~~~g~------~~~~~~~~~l~~~G~iv~~g~  245 (333)
T 1wly_A          214 GVDVVYDSIGK------DTLQKSLDCLRPRGMCAAYGH  245 (333)
T ss_dssp             CEEEEEECSCT------TTHHHHHHTEEEEEEEEECCC
T ss_pred             CCeEEEECCcH------HHHHHHHHhhccCCEEEEEec
Confidence            47999988763      123567788889989998874

>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}

Probab=94.05  E-value=0.2  Score=42.97  Aligned_cols=95  Identities=12%  Similarity=0.057  Sum_probs=57.3

Q ss_pred             eEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc--cccccCCHHHHhhcCCEEEEc
Q 019387          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      +|.|.|- |.||+.+++.|+ .-|.+|++.++++....+. .        ..+....  ......+  +.+.++|+|+.+
T Consensus         2 kilVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~-~--------~~~~~~~~~D~~d~~~--~~~~~~d~vi~~   69 (224)
T 3h2s_A            2 KIAVLGATGRAGSAIVAEAR-RRGHEVLAVVRDPQKAADR-L--------GATVATLVKEPLVLTE--ADLDSVDAVVDA   69 (224)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHHHHHH-T--------CTTSEEEECCGGGCCH--HHHTTCSEEEEC
T ss_pred             EEEEEcCCCHHHHHHHHHHH-HCCCEEEEEEecccccccc-c--------CCCceEEecccccccH--hhcccCCEEEEC
Confidence            6889997 999999999984 6699999999886542111 0        0011111  1111112  678899999988


Q ss_pred             CCCC--cc---cccccCHHHHhcCC-CCcEEEEcCC
Q 019387          244 PVLD--KT---TYHLINKERLATMK-KEAILVNCSR  273 (342)
Q Consensus       244 ~pl~--~~---t~~li~~~~l~~mk-~ga~lINvaR  273 (342)
                      ....  +.   ..-......+..|+ .|..+|+++.
T Consensus        70 ag~~~~~~~~~~n~~~~~~l~~a~~~~~~~~v~~SS  105 (224)
T 3h2s_A           70 LSVPWGSGRGYLHLDFATHLVSLLRNSDTLAVFILG  105 (224)
T ss_dssp             CCCCTTSSCTHHHHHHHHHHHHTCTTCCCEEEEECC
T ss_pred             CccCCCcchhhHHHHHHHHHHHHHHHcCCcEEEEec
Confidence            7653  11   11111244566665 3567888764

>1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1

Probab=94.01  E-value=0.13  Score=49.89  Aligned_cols=119  Identities=18%  Similarity=0.279  Sum_probs=69.3

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCc---------hhHHHHHHhhhhh--h--hhccCCCCccccc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQ---------ATRLEKFVTAYGQ--F--LKANGEQPVTWKR  226 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~---------~~~~~~~~~~~~~--~--~~~~~~~~~~~~~  226 (342)
                      .++.|++|.|.|+|++|+.+|+.| ..+|++|++ .|.+.         ...+..+.+..+.  +  +...+. .   ..
T Consensus       206 ~~l~gk~vaVqG~GnVG~~aa~~L-~e~GakVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~~~v~~y~~~~~-~---~~  280 (421)
T 1v9l_A          206 GGIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDN-A---EF  280 (421)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSC-C---CC
T ss_pred             CCcCCCEEEEECcCHHHHHHHHHH-HHCCCEEEEEECCCcEEECCCCCCHHHHHHHHHhhCCccccccccccC-c---eE
Confidence            478999999999999999999997 689999984 44421         1111111111110  0  000000 0   01


Q ss_pred             cCCHHHHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       227 ~~~l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ..+-++++ ..||+++-|.-     .+.|+.+....++- .+++--+-+++ ..++ .+.|.+..+.
T Consensus       281 ~~~~~~~~~~~~Dil~P~A~-----~~~I~~~~a~~l~a-k~V~EgAN~p~-t~~a-~~~l~~~Gi~  339 (421)
T 1v9l_A          281 VKNPDAIFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  339 (421)
T ss_dssp             CSSTTGGGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             eCCchhhhcCCccEEEecCc-----CCccchhhHHHcCc-eEEEecCCCcC-CHHH-HHHHHHCCCE
Confidence            10223333 47999998863     45666666666753 47777888886 4444 3566666554

>3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp}

Probab=93.98  E-value=0.12  Score=44.54  Aligned_cols=70  Identities=14%  Similarity=0.130  Sum_probs=47.5

Q ss_pred             eEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc--cccc-cCCHHHHhhcCCEEEE
Q 019387          167 TVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKR-ASSMDEVLREADVISL  242 (342)
Q Consensus       167 tvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~l~~ll~~aDiV~l  242 (342)
                      +|.|.| -|.||+.+++.| ..-|.+|++.++++......           .+....  .... ..++.+++.+.|+|+.
T Consensus         2 ~ilItGatG~iG~~l~~~L-~~~g~~V~~~~R~~~~~~~~-----------~~~~~~~~D~~d~~~~~~~~~~~~d~vi~   69 (219)
T 3dqp_A            2 KIFIVGSTGRVGKSLLKSL-STTDYQIYAGARKVEQVPQY-----------NNVKAVHFDVDWTPEEMAKQLHGMDAIIN   69 (219)
T ss_dssp             EEEEESTTSHHHHHHHHHH-TTSSCEEEEEESSGGGSCCC-----------TTEEEEECCTTSCHHHHHTTTTTCSEEEE
T ss_pred             eEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCccchhhc-----------CCceEEEecccCCHHHHHHHHcCCCEEEE
Confidence            688999 899999999998 57799999999987532100           000000  1111 2356677889999998


Q ss_pred             cCCCCc
Q 019387          243 HPVLDK  248 (342)
Q Consensus       243 ~~pl~~  248 (342)
                      +.....
T Consensus        70 ~ag~~~   75 (219)
T 3dqp_A           70 VSGSGG   75 (219)
T ss_dssp             CCCCTT
T ss_pred             CCcCCC
Confidence            887554

>2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus}

Probab=93.92  E-value=0.13  Score=46.39  Aligned_cols=38  Identities=18%  Similarity=0.181  Sum_probs=32.9

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .+.||++.|.|-   |.||+.+|+.|+ ..|++|++.++..+
T Consensus        18 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~   58 (285)
T 2p91_A           18 LLEGKRALITGVANERSIAYGIAKSFH-REGAQLAFTYATPK   58 (285)
T ss_dssp             TTTTCEEEECCCSSTTSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             ccCCCEEEEECCCCCCcHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            378999999997   599999999985 67999999988763

>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}

Probab=93.91  E-value=0.089  Score=51.39  Aligned_cols=107  Identities=12%  Similarity=0.145  Sum_probs=62.1

Q ss_pred             CeEEEEecCHHHHHHHHHHHh---------cCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh
Q 019387          166 QTVGVIGAGRIGSAYARMMVE---------GFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~---------afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~  235 (342)
                      -+|||+|+|.||+.+++.|.+         +.+.+|.+ +|+++... ..+.          .    ....+.++++++.
T Consensus        11 irIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~-~~~~----------~----~~~~~~d~~ell~   75 (444)
T 3mtj_A           11 IHVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKA-EALA----------G----GLPLTTNPFDVVD   75 (444)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHH-HHHH----------T----TCCEESCTHHHHT
T ss_pred             ccEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHh-hhhc----------c----cCcccCCHHHHhc
Confidence            489999999999999876531         25677764 67765432 2110          0    1123468899986


Q ss_pred             --cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC-HHHHHHHHHcCCc
Q 019387          236 --EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID-EVALVEHLKQNPM  291 (342)
Q Consensus       236 --~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd-~~aL~~aL~~g~i  291 (342)
                        +.|+|+.|+|.+.....    -....++.|.-++-.--+.+.. -+.|.++.++.+.
T Consensus        76 d~diDvVve~tp~~~~h~~----~~~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv  130 (444)
T 3mtj_A           76 DPEIDIVVELIGGLEPARE----LVMQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGV  130 (444)
T ss_dssp             CTTCCEEEECCCSSTTHHH----HHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCEEEEcCCCchHHHH----HHHHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCC
Confidence              47999999985211111    1234555666666443322222 2566666655433

>3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum}

Probab=93.89  E-value=0.32  Score=47.40  Aligned_cols=122  Identities=16%  Similarity=0.102  Sum_probs=69.5

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCC-------ch--hHHHHH---Hhhhhhhhhc--cCCCCccc
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY-------QA--TRLEKF---VTAYGQFLKA--NGEQPVTW  224 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~-------~~--~~~~~~---~~~~~~~~~~--~~~~~~~~  224 (342)
                      |.++.|+||.|-|+|++|+.+|+.| ...|++|+ +.|.+       .-  ..+...   .+.....+..  ......  
T Consensus       234 g~~l~g~~VaVQG~GnVG~~aa~~L-~e~GakvVavsD~~G~iyd~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~~~a--  310 (456)
T 3r3j_A          234 NDNLENKKCLVSGSGNVAQYLVEKL-IEKGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTA--  310 (456)
T ss_dssp             TCCSTTCCEEEECCSHHHHHHHHHH-HHHTCCBCCEECSSCEEECTTCCCHHHHHHHHHHHHTSCCCGGGGGGTCSSC--
T ss_pred             CCCccCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHHHhcCcchhhhhhcCCCc--
Confidence            3568999999999999999999997 57899986 45532       10  111110   0000000000  000011  


Q ss_pred             cccCCHHHH-hhcCCEEEEcCCCCcccccccCHHHHhcCC--CCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          225 KRASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK--KEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       225 ~~~~~l~~l-l~~aDiV~l~~pl~~~t~~li~~~~l~~mk--~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ... +-+++ -..||+++-|.-     .+.|+.+....+.  +=.+++--+-+++-.+.  .+.|.+..|.
T Consensus       311 ~~v-~~~~i~~~~~DI~iPcA~-----~~~I~~~na~~l~~~~ak~V~EgAN~p~T~eA--~~iL~~rGI~  373 (456)
T 3r3j_A          311 KYF-ENQKPWNIPCDIAFPCAT-----QNEINENDADLFIQNKCKMIVEGANMPTHIKA--LHKLKQNNII  373 (456)
T ss_dssp             EEE-CSCCGGGSCCSEEEECSC-----TTCBCHHHHHHHHHHTCCEEECCSSSCBCTTH--HHHHHTTTCE
T ss_pred             eEe-CCccccccCccEEEeCCC-----ccchhhHHHHHHHhcCCeEEEecCCCCCCHHH--HHHHHHCCCE
Confidence            111 11222 246999987753     5788888777762  23477778888865443  3677665553

>2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix}

Probab=93.88  E-value=0.084  Score=48.72  Aligned_cols=108  Identities=17%  Similarity=0.113  Sum_probs=62.9

Q ss_pred             cCCC-eEEEEec-CHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--c-
Q 019387          163 LKGQ-TVGVIGA-GRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--E-  236 (342)
Q Consensus       163 L~gk-tvgIvG~-G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~-  236 (342)
                      +.-+ ++.|+|. |++|+.+++.+ ...|.+ |..++|.....                 ...+...+.+++++..  . 
T Consensus        10 ~~~~~~vvV~Gasg~~G~~~~~~l-~~~g~~~v~~VnP~~~g~-----------------~i~G~~vy~sl~el~~~~~~   71 (297)
T 2yv2_A           10 VDSETRVLVQGITGREGSFHAKAM-LEYGTKVVAGVTPGKGGS-----------------EVHGVPVYDSVKEALAEHPE   71 (297)
T ss_dssp             CSTTCEEEEETTTSHHHHHHHHHH-HHHTCEEEEEECTTCTTC-----------------EETTEEEESSHHHHHHHCTT
T ss_pred             hCCCCEEEEECCCCCHHHHHHHHH-HhCCCcEEEEeCCCCCCc-----------------eECCEeeeCCHHHHhhcCCC
Confidence            3334 4677798 99999999987 556887 33566542100                 0123345678999987  5 


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc-ccCHHHHHHHHHcCCce
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP-VIDEVALVEHLKQNPMF  292 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~-~vd~~aL~~aL~~g~i~  292 (342)
                      .|++++++|- +.+...+.+ ..++ +.. .+|..+-|= .-+++.|.++.++..+.
T Consensus        72 ~DvaIi~vp~-~~~~~~v~e-a~~~-Gi~-~vVi~t~G~~~~~~~~l~~~A~~~gi~  124 (297)
T 2yv2_A           72 INTSIVFVPA-PFAPDAVYE-AVDA-GIR-LVVVITEGIPVHDTMRFVNYARQKGAT  124 (297)
T ss_dssp             CCEEEECCCG-GGHHHHHHH-HHHT-TCS-EEEECCCCCCHHHHHHHHHHHHHHTCE
T ss_pred             CCEEEEecCH-HHHHHHHHH-HHHC-CCC-EEEEECCCCCHHHHHHHHHHHHHcCCE
Confidence            9999999983 233333322 2222 222 144444442 12456788888765553

>1tt5_B Ubiquitin-activating enzyme E1C isoform 1; cell cycle, ligase; 2.60A {Homo sapiens} SCOP: c.111.1.2 PDB: 3dbl_B 3dbr_B 3dbh_B 3gzn_B* 1yov_B 1r4m_B 1r4n_B*

Probab=93.85  E-value=0.069  Score=52.02  Aligned_cols=98  Identities=18%  Similarity=0.112  Sum_probs=57.0

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCch------------------hHHHHHHhhhhhhhhccCCCCc
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQA------------------TRLEKFVTAYGQFLKANGEQPV  222 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~------------------~~~~~~~~~~~~~~~~~~~~~~  222 (342)
                      .|.+++|.|||.|.+|.++|+.|+ ..|. ++..+|...-                  .+.+...+........-.....
T Consensus        37 ~L~~~~VlvvG~GGlGs~va~~La-~aGvg~i~ivD~D~Ve~sNL~RQ~l~~~~diG~~Ka~~a~~~l~~lnp~v~v~~~  115 (434)
T 1tt5_B           37 LLDTCKVLVIGAGGLGCELLKNLA-LSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH  115 (434)
T ss_dssp             HHHTCCEEEECSSTHHHHHHHHHH-HTTCCCEEEEECCBCCGGGTTTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred             HhcCCEEEEECcCHHHHHHHHHHH-HcCCCEEEEEcCCEechhccCCCcCCChhHcCcHHHHHHHHHHHhhCCCCEEEEE
Confidence            458999999999999999999985 5576 6777764320                  0111111111010000000000


Q ss_pred             cccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhc
Q 019387          223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLAT  261 (342)
Q Consensus       223 ~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~  261 (342)
                      ...-.....++++++|+|+.|+. +.+++..+|......
T Consensus       116 ~~~i~~~~~~~~~~~DlVi~~~D-n~~~R~~in~~c~~~  153 (434)
T 1tt5_B          116 FNKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISL  153 (434)
T ss_dssp             ESCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHT
T ss_pred             ecccchhhHHHhcCCCEEEECCC-CHHHHHHHHHHHHHh
Confidence            00000112578899999999975 678888888876553

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=93.78  E-value=0.13  Score=43.31  Aligned_cols=73  Identities=12%  Similarity=0.076  Sum_probs=48.4

Q ss_pred             CCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc--cccccCCHHHHhhcCCEEE
Q 019387          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~aDiV~  241 (342)
                      +++|.|.|- |.||+.+++.|+ .-|.+|++.++++.....         ....+....  ......++.++++++|+|+
T Consensus         3 ~~~ilVtGatG~iG~~l~~~l~-~~g~~V~~~~r~~~~~~~---------~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi   72 (206)
T 1hdo_A            3 VKKIAIFGATGQTGLTTLAQAV-QAGYEVTVLVRDSSRLPS---------EGPRPAHVVVGDVLQAADVDKTVAGQDAVI   72 (206)
T ss_dssp             CCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCGGGSCS---------SSCCCSEEEESCTTSHHHHHHHHTTCSEEE
T ss_pred             CCEEEEEcCCcHHHHHHHHHHH-HCCCeEEEEEeChhhccc---------ccCCceEEEEecCCCHHHHHHHHcCCCEEE
Confidence            478999998 999999999984 669999999987653100         000010000  1112235678889999999


Q ss_pred             EcCCCC
Q 019387          242 LHPVLD  247 (342)
Q Consensus       242 l~~pl~  247 (342)
                      .+....
T Consensus        73 ~~a~~~   78 (206)
T 1hdo_A           73 VLLGTR   78 (206)
T ss_dssp             ECCCCT
T ss_pred             ECccCC
Confidence            887643

>3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A*

Probab=93.78  E-value=0.072  Score=49.92  Aligned_cols=116  Identities=16%  Similarity=0.170  Sum_probs=63.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhc-----C--CcEEE-EEcCCchhHHH-----HHHhhhhhhhhccCCCCccccccC---C
Q 019387          166 QTVGVIGAGRIGSAYARMMVEG-----F--KMNLI-YYDLYQATRLE-----KFVTAYGQFLKANGEQPVTWKRAS---S  229 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~a-----f--g~~V~-~~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~---~  229 (342)
                      -+|||+|+|.||+.+++.+.+.     .  +++|. ++|+++....+     .+.+.+    .. +  ... ...+   +
T Consensus         7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~----~~-~--~~~-~~~~~~~d   78 (331)
T 3c8m_A            7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYK----EK-G--SLD-SLEYESIS   78 (331)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHH----HT-T--CGG-GCCSEECC
T ss_pred             EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhh----cc-C--Ccc-cccCCCCC
Confidence            3799999999999999887421     1  46765 46766532111     011100    00 0  000 0123   7


Q ss_pred             HHHHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCccc-CHHHHHHHHHcCC
Q 019387          230 MDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVI-DEVALVEHLKQNP  290 (342)
Q Consensus       230 l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~v-d~~aL~~aL~~g~  290 (342)
                      +++++ .+.|+|+.|+|.. .|-..--+-....++.|.-+|...-+.+. .-+.|.++.++..
T Consensus        79 ~~~ll~~~iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~~g  140 (331)
T 3c8m_A           79 ASEALARDFDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARSNN  140 (331)
T ss_dssp             HHHHHHSSCSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCCCCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHHcC
Confidence            88887 3589999999964 22122222345566677777765433332 2345665554443

>2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii}

Probab=93.74  E-value=0.044  Score=51.82  Aligned_cols=30  Identities=20%  Similarity=0.440  Sum_probs=23.8

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcCCcEEEEE
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYY  195 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~afg~~V~~~  195 (342)
                      .+|||+| .|.||+.+.+.|...=.+++.+.
T Consensus         5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai   35 (350)
T 2ep5_A            5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKV   35 (350)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEE
T ss_pred             cEEEEECcCCHHHHHHHHHHHhCCCcEEEEE
Confidence            4799999 99999999998743235677766

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=93.74  E-value=0.084  Score=49.48  Aligned_cols=92  Identities=17%  Similarity=0.185  Sum_probs=59.1

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc-ccCCHHHHhh-----cC
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK-RASSMDEVLR-----EA  237 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ll~-----~a  237 (342)
                      ++|.|.|. |.||+.+++.+ +..|+ +|++.+++.+.. +.....+       +... ... ...++.+.+.     ..
T Consensus       162 ~~vlI~GasggiG~~~~~~a-~~~Ga~~Vi~~~~~~~~~-~~~~~~~-------g~~~-~~d~~~~~~~~~~~~~~~~~~  231 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIG-HFLGCSRVVGICGTHEKC-ILLTSEL-------GFDA-AINYKKDNVAEQLRESCPAGV  231 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHH-HHTTCSEEEEEESCHHHH-HHHHHTS-------CCSE-EEETTTSCHHHHHHHHCTTCE
T ss_pred             cEEEEECCCcHHHHHHHHHH-HHCCCCeEEEEeCCHHHH-HHHHHHc-------CCce-EEecCchHHHHHHHHhcCCCC
Confidence            89999998 99999999985 78999 999999876432 2111111       1110 011 1123333332     47


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+++.|...  +    .-...+..+++|..+|.++-
T Consensus       232 d~vi~~~G~--~----~~~~~~~~l~~~G~iv~~G~  261 (357)
T 2zb4_A          232 DVYFDNVGG--N----ISDTVISQMNENSHIILCGQ  261 (357)
T ss_dssp             EEEEESCCH--H----HHHHHHHTEEEEEEEEECCC
T ss_pred             CEEEECCCH--H----HHHHHHHHhccCcEEEEECC
Confidence            999888752  1    23566788899989988864

>2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans}

Probab=93.73  E-value=0.59  Score=45.89  Aligned_cols=113  Identities=14%  Similarity=0.102  Sum_probs=70.0

Q ss_pred             ccCCCeEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHH--HHHHhhhhhhhhccCCCCccccccCC
Q 019387          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRL--EKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       162 ~L~gktvgIvG~----------G~IG~~vA~~l~~afg~~V~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      .+.|++|+|+|+          ..-...+++.| ...|++|.+|||......  +.....+....     ....+....+
T Consensus       332 ~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L-~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~  405 (481)
T 2o3j_A          332 TVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHL-MEEHAKLSVYDPKVQKSQMLNDLASVTSAQD-----VERLITVESD  405 (481)
T ss_dssp             CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECSSSCHHHHHHHHHHHSCHHH-----HHHHEEEESS
T ss_pred             ccCCCeEEEEeeeeCCCCCccccChHHHHHHHH-HHCCCEEEEECCCCCchhhHHHHHhhhcccc-----ccCceeecCC
Confidence            478999999997          45678889987 688999999999864311  11110000000     0000122357


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccccCHHH-HhcCCCCcEEEEcCCCcccCHHHHHH
Q 019387          230 MDEVLREADVISLHPVLDKTTYHLINKER-LATMKKEAILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       230 l~~ll~~aDiV~l~~pl~~~t~~li~~~~-l~~mk~ga~lINvaRG~~vd~~aL~~  284 (342)
                      +.+.++++|.|++++.- ++-+. ++.+. .+.|+...+++|. |+ ++|.+.+.+
T Consensus       406 ~~~~~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~~~  457 (481)
T 2o3j_A          406 PYAAARGAHAIVVLTEW-DEFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKALRE  457 (481)
T ss_dssp             HHHHHTTCSEEEECSCC-GGGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHHHH
T ss_pred             HHHHHcCCCEEEEcCCc-HHhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHHHh
Confidence            78889999999999863 33332 35444 4467776688887 55 467665443

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=93.72  E-value=0.075  Score=52.13  Aligned_cols=74  Identities=16%  Similarity=0.288  Sum_probs=47.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhh-hhccCCCCccccccCCHHHH-hhcCCEEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQF-LKANGEQPVTWKRASSMDEV-LREADVISL  242 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l-l~~aDiV~l  242 (342)
                      ..+|-|+|+|.+|+.+|+.| ..-|.+|++.|..++. .+...+.++-. +..++      .....|+++ +++||.++.
T Consensus         3 ~M~iiI~G~G~vG~~la~~L-~~~~~~v~vId~d~~~-~~~~~~~~~~~~i~Gd~------~~~~~L~~Agi~~ad~~ia   74 (461)
T 4g65_A            3 AMKIIILGAGQVGGTLAENL-VGENNDITIVDKDGDR-LRELQDKYDLRVVNGHA------SHPDVLHEAGAQDADMLVA   74 (461)
T ss_dssp             CEEEEEECCSHHHHHHHHHT-CSTTEEEEEEESCHHH-HHHHHHHSSCEEEESCT------TCHHHHHHHTTTTCSEEEE
T ss_pred             cCEEEEECCCHHHHHHHHHH-HHCCCCEEEEECCHHH-HHHHHHhcCcEEEEEcC------CCHHHHHhcCCCcCCEEEE
Confidence            35799999999999999997 6889999999998753 33322222100 00000      011234443 688999988


Q ss_pred             cCCC
Q 019387          243 HPVL  246 (342)
Q Consensus       243 ~~pl  246 (342)
                      +.+.
T Consensus        75 ~t~~   78 (461)
T 4g65_A           75 VTNT   78 (461)
T ss_dssp             CCSC
T ss_pred             EcCC
Confidence            7764

>3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum}

Probab=93.68  E-value=0.09  Score=49.81  Aligned_cols=70  Identities=13%  Similarity=0.147  Sum_probs=45.2

Q ss_pred             CeEEEEe-cCHHHHH-HH----HHHHhcCCcEE----------EEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC
Q 019387          166 QTVGVIG-AGRIGSA-YA----RMMVEGFKMNL----------IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS  229 (342)
Q Consensus       166 ktvgIvG-~G~IG~~-vA----~~l~~afg~~V----------~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (342)
                      .+||||| +|.||+. .+    +.+.+.-+..+          .++|+.++.. +.+.+.|       +..    ..+.+
T Consensus         7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a-~~~a~~~-------~~~----~~~~~   74 (383)
T 3oqb_A            7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKV-EALAKRF-------NIA----RWTTD   74 (383)
T ss_dssp             EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHH-HHHHHHT-------TCC----CEESC
T ss_pred             eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHH-HHHHHHh-------CCC----cccCC
Confidence            3799999 9999998 55    55432223332          4788887542 2222222       111    13579


Q ss_pred             HHHHhhc--CCEEEEcCCCC
Q 019387          230 MDEVLRE--ADVISLHPVLD  247 (342)
Q Consensus       230 l~~ll~~--aDiV~l~~pl~  247 (342)
                      +++++.+  .|+|++|.|..
T Consensus        75 ~~~ll~~~~iD~V~i~tp~~   94 (383)
T 3oqb_A           75 LDAALADKNDTMFFDAATTQ   94 (383)
T ss_dssp             HHHHHHCSSCCEEEECSCSS
T ss_pred             HHHHhcCCCCCEEEECCCch
Confidence            9999976  89999999853

>3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str}

Probab=93.65  E-value=0.14  Score=45.74  Aligned_cols=37  Identities=24%  Similarity=0.202  Sum_probs=30.6

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEE-cCCc
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYY-DLYQ  199 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~-d~~~  199 (342)
                      .+.||++.|.|- |.||+++|+.|+ .-|++|++. ++..
T Consensus         5 ~l~~k~vlVTGas~GIG~aia~~la-~~G~~V~~~~~~~~   43 (259)
T 3edm_A            5 RFTNRTIVVAGAGRDIGRACAIRFA-QEGANVVLTYNGAA   43 (259)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECSSC
T ss_pred             CCCCCEEEEECCCchHHHHHHHHHH-HCCCEEEEEcCCCH
Confidence            578999999986 589999999985 679999987 4443

>3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron}

Probab=93.63  E-value=0.082  Score=45.63  Aligned_cols=71  Identities=14%  Similarity=0.013  Sum_probs=47.9

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCC--CccccccCCHHHHhhcCCEEEE
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ++|.|.| -|.||+.+++.| ..-|.+|++.++.+.... ..         ..+..  ........+++++++++|+|+.
T Consensus         5 ~~ilItGatG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~-~~---------~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~   73 (227)
T 3dhn_A            5 KKIVLIGASGFVGSALLNEA-LNRGFEVTAVVRHPEKIK-IE---------NEHLKVKKADVSSLDEVCEVCKGADAVIS   73 (227)
T ss_dssp             CEEEEETCCHHHHHHHHHHH-HTTTCEEEEECSCGGGCC-CC---------CTTEEEECCCTTCHHHHHHHHTTCSEEEE
T ss_pred             CEEEEEcCCchHHHHHHHHH-HHCCCEEEEEEcCcccch-hc---------cCceEEEEecCCCHHHHHHHhcCCCEEEE
Confidence            6899999 599999999998 477999999999865321 00         00000  0111123457788999999998


Q ss_pred             cCCCC
Q 019387          243 HPVLD  247 (342)
Q Consensus       243 ~~pl~  247 (342)
                      +....
T Consensus        74 ~a~~~   78 (227)
T 3dhn_A           74 AFNPG   78 (227)
T ss_dssp             CCCC-
T ss_pred             eCcCC
Confidence            87644

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=93.59  E-value=0.28  Score=46.29  Aligned_cols=94  Identities=14%  Similarity=0.033  Sum_probs=57.1

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-----c
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  236 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-----~  236 (342)
                      -.|++|.|+|. |.+|...++. ++.+|++|++.. ++++ .+ +...+       +....-.....++.+.+.     .
T Consensus       163 ~~g~~VlV~Ga~G~vG~~a~ql-a~~~Ga~Vi~~~-~~~~-~~-~~~~l-------Ga~~vi~~~~~~~~~~v~~~t~g~  231 (371)
T 3gqv_A          163 SKPVYVLVYGGSTATATVTMQM-LRLSGYIPIATC-SPHN-FD-LAKSR-------GAEEVFDYRAPNLAQTIRTYTKNN  231 (371)
T ss_dssp             SSCCEEEEESTTSHHHHHHHHH-HHHTTCEEEEEE-CGGG-HH-HHHHT-------TCSEEEETTSTTHHHHHHHHTTTC
T ss_pred             CCCcEEEEECCCcHHHHHHHHH-HHHCCCEEEEEe-CHHH-HH-HHHHc-------CCcEEEECCCchHHHHHHHHccCC
Confidence            36899999999 8999999998 589999998875 3332 22 21222       211110001123333322     3


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcC-CCCcEEEEcC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATM-KKEAILVNCS  272 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~m-k~ga~lINva  272 (342)
                      .|+++-|+.. +.+    -...+..+ ++|..++.++
T Consensus       232 ~d~v~d~~g~-~~~----~~~~~~~l~~~~G~iv~~g  263 (371)
T 3gqv_A          232 LRYALDCITN-VES----TTFCFAAIGRAGGHYVSLN  263 (371)
T ss_dssp             CCEEEESSCS-HHH----HHHHHHHSCTTCEEEEESS
T ss_pred             ccEEEECCCc-hHH----HHHHHHHhhcCCCEEEEEe
Confidence            7999988863 111    23456677 6788888876

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=93.59  E-value=0.14  Score=46.59  Aligned_cols=38  Identities=21%  Similarity=0.204  Sum_probs=32.5

Q ss_pred             ccCCCeEEEEecC-H--HHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIGAG-R--IGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG~G-~--IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .+.||++.|.|-+ .  ||+++|+.|+ ..|++|++.++...
T Consensus        28 ~l~gk~~lVTGasg~~GIG~aia~~la-~~G~~V~~~~r~~~   68 (293)
T 3grk_A           28 LLQGKRGLILGVANNRSIAWGIAKAAR-EAGAELAFTYQGDA   68 (293)
T ss_dssp             TTTTCEEEEECCCSSSSHHHHHHHHHH-HTTCEEEEEECSHH
T ss_pred             cCCCCEEEEEcCCCCCcHHHHHHHHHH-HCCCEEEEEcCCHH
Confidence            5899999999984 4  9999999985 67999999988753

>3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A*

Probab=93.57  E-value=2.5  Score=39.85  Aligned_cols=115  Identities=11%  Similarity=0.170  Sum_probs=68.2

Q ss_pred             cccCCCeEEEEec-------CHHHHHHHHHHHhcCCcEEEEEcCCchhH-HHHHHhhhhhhhhccCCCCccccccCCHHH
Q 019387          161 NLLKGQTVGVIGA-------GRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDE  232 (342)
Q Consensus       161 ~~L~gktvgIvG~-------G~IG~~vA~~l~~afg~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  232 (342)
                      .++.|++++++|-       .++.++....+ ..||++|.+.-|.+.-. .+.+.+.....+...+   ..+....++++
T Consensus       186 ~dl~g~kv~~~~~~~gd~~~~~Va~S~~~~~-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g---~~i~~~~d~~e  261 (359)
T 3kzn_A          186 PDLRGKKYVLTWTYHPKPLNTAVANSALTIA-TRMGMDVTLLCPTPDYILDERYMDWAAQNVAESG---GSLQVSHDIDS  261 (359)
T ss_dssp             SCCTTCEEEEEECCCSSCCCSHHHHHHHHHH-HHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHS---CEEEEECCHHH
T ss_pred             ccccCCeEEEEEeecCCccccchhhhhHHHH-HhccccEEEEecccccCCCHHHHHHHHHHHHhhC---CCcccccCHHH
Confidence            3588999999976       36888888886 68999999988753211 1111110000011111   12334578999


Q ss_pred             HhhcCCEEEEcCCCCcc---------------cccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          233 VLREADVISLHPVLDKT---------------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       233 ll~~aDiV~l~~pl~~~---------------t~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      +++++|+|..-.-....               ....++++.++ ++++++|.-+.   ||.=|+.+
T Consensus       262 av~~aDvvyt~r~q~~r~~~~~~~~~~~~~~~~~y~v~~~l~~-~~~~ai~MHplP~~Rg~EI~~e  326 (359)
T 3kzn_A          262 AYAGADVVYAKSWGALPFFGNWEPEKPIRDQYQHFIVDERKMA-LTNNGVFSHCLPLRRNVKATDA  326 (359)
T ss_dssp             HHTTCSEEEEECCCCGGGTTCCTTHHHHHGGGGGGSBCHHHHH-TSSSCEEECCSCCCBTTTBCHH
T ss_pred             HhcCCeEEEEEEEEEeecccchhhhHHHHHHHhccChHHHHhc-CCCCCEEECCCCCCCCCCcCHH
Confidence            99999999765433221               01235666655 55677777655   77655544

>1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2

Probab=93.55  E-value=0.15  Score=46.13  Aligned_cols=77  Identities=19%  Similarity=0.251  Sum_probs=48.1

Q ss_pred             CCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhH----HHHHHhhhhhhhhccCCCCc--cccccCCHHHHhhcC
Q 019387          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR----LEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREA  237 (342)
Q Consensus       165 gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~a  237 (342)
                      .++|.|.|- |.||+.+++.|+ .-|.+|++.+|.....    .......+    ...+....  ......++.++++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~l~R~~~~~~~~~~~~~~~~l----~~~~v~~v~~D~~d~~~l~~~~~~~   78 (308)
T 1qyc_A            4 RSRILLIGATGYIGRHVAKASL-DLGHPTFLLVRESTASSNSEKAQLLESF----KASGANIVHGSIDDHASLVEAVKNV   78 (308)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHH-HTTCCEEEECCCCCTTTTHHHHHHHHHH----HTTTCEEECCCTTCHHHHHHHHHTC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHH-hCCCCEEEEECCcccccCHHHHHHHHHH----HhCCCEEEEeccCCHHHHHHHHcCC
Confidence            468999996 999999999984 6689999998874311    00000000    01111111  111234677889999


Q ss_pred             CEEEEcCCC
Q 019387          238 DVISLHPVL  246 (342)
Q Consensus       238 DiV~l~~pl  246 (342)
                      |+|+.+.+.
T Consensus        79 d~vi~~a~~   87 (308)
T 1qyc_A           79 DVVISTVGS   87 (308)
T ss_dssp             SEEEECCCG
T ss_pred             CEEEECCcc
Confidence            999988764

>3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A

Probab=93.55  E-value=0.08  Score=49.81  Aligned_cols=101  Identities=14%  Similarity=0.166  Sum_probs=54.6

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCc--hhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .+|+|+| .|.+|+.+.++|...=+.++..+..+.  +.......+.+..+ .  +.....+....+.++++.++|+|++
T Consensus         5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~-~--~~~~~~v~~~~~~~~~~~~~Dvvf~   81 (337)
T 3dr3_A            5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQL-K--GIVELPLQPMSDISEFSPGVDVVFL   81 (337)
T ss_dssp             EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGG-T--TTCCCBEEEESSGGGTCTTCSEEEE
T ss_pred             eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccc-c--CccceeEeccCCHHHHhcCCCEEEE
Confidence            4899999 699999999998533456777653322  01001111111111 0  1111111111034455589999999


Q ss_pred             cCCCCcccccccCHHHHh-cCCCCcEEEEcCCCc
Q 019387          243 HPVLDKTTYHLINKERLA-TMKKEAILVNCSRGP  275 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~-~mk~ga~lINvaRG~  275 (342)
                      |+|..      ...+... ..+.|+.+|+.+-.-
T Consensus        82 a~p~~------~s~~~~~~~~~~g~~vIDlSa~f  109 (337)
T 3dr3_A           82 ATAHE------VSHDLAPQFLEAGCVVFDLSGAF  109 (337)
T ss_dssp             CSCHH------HHHHHHHHHHHTTCEEEECSSTT
T ss_pred             CCChH------HHHHHHHHHHHCCCEEEEcCCcc
Confidence            99831      2222222 246799999987543

>1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A*

Probab=93.41  E-value=0.16  Score=44.17  Aligned_cols=72  Identities=18%  Similarity=0.122  Sum_probs=48.8

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcC--CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhcCC
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGF--KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREAD  238 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~af--g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~aD  238 (342)
                      .+++|.|.| -|.||+.+++.|+ .-  |.+|++.++++... +..         ......  .......++++++++.|
T Consensus         3 ~~~~ilVtGasG~iG~~l~~~l~-~~~~g~~V~~~~r~~~~~-~~~---------~~~~~~~~~D~~d~~~~~~~~~~~d   71 (253)
T 1xq6_A            3 NLPTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGK-EKI---------GGEADVFIGDITDADSINPAFQGID   71 (253)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHH-HTTTTCEEEEEESCHHHH-HHT---------TCCTTEEECCTTSHHHHHHHHTTCS
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHH-hcCCCcEEEEEEcCCCch-hhc---------CCCeeEEEecCCCHHHHHHHHcCCC
Confidence            578999999 6999999999985 55  89999999876432 110         001110  11112246778889999


Q ss_pred             EEEEcCCC
Q 019387          239 VISLHPVL  246 (342)
Q Consensus       239 iV~l~~pl  246 (342)
                      +|+.+...
T Consensus        72 ~vi~~a~~   79 (253)
T 1xq6_A           72 ALVILTSA   79 (253)
T ss_dssp             EEEECCCC
T ss_pred             EEEEeccc
Confidence            99988754

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=93.34  E-value=0.15  Score=49.35  Aligned_cols=94  Identities=20%  Similarity=0.188  Sum_probs=60.2

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccc---------------
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKR---------------  226 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------------  226 (342)
                      .|++|.|.|. |.||..+++.+ +..|++|++.+++.++. +. ...+       +.... ....               
T Consensus       220 ~g~~VlV~GasG~iG~~a~qla-~~~Ga~vi~~~~~~~~~-~~-~~~l-------Ga~~~i~~~~~~~~~~~~~~~~~~~  289 (447)
T 4a0s_A          220 QGDIVLIWGASGGLGSYAIQFV-KNGGGIPVAVVSSAQKE-AA-VRAL-------GCDLVINRAELGITDDIADDPRRVV  289 (447)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HH-HHHT-------TCCCEEEHHHHTCCTTGGGCHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHH-HHcCCEEEEEeCCHHHH-HH-HHhc-------CCCEEEecccccccccccccccccc
Confidence            5899999998 99999999984 89999999988765432 21 1111       11110 0000               


Q ss_pred             ------cCCHHHHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          227 ------ASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       227 ------~~~l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                            ...+.++. ...|+|+.+...  .    .-...+..+++|..+|+++-
T Consensus       290 ~~~~~~~~~v~~~~g~g~Dvvid~~G~--~----~~~~~~~~l~~~G~iv~~G~  337 (447)
T 4a0s_A          290 ETGRKLAKLVVEKAGREPDIVFEHTGR--V----TFGLSVIVARRGGTVVTCGS  337 (447)
T ss_dssp             HHHHHHHHHHHHHHSSCCSEEEECSCH--H----HHHHHHHHSCTTCEEEESCC
T ss_pred             hhhhHHHHHHHHHhCCCceEEEECCCc--h----HHHHHHHHHhcCCEEEEEec
Confidence                  01112222 258999988763  1    12566788999999999873

>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*

Probab=93.31  E-value=0.091  Score=50.99  Aligned_cols=115  Identities=17%  Similarity=0.126  Sum_probs=70.6

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +.||+|.|||+|..|.+.|+.| ...|.+|.++|.+.......       .+. .+..-. . .... .+.+..+|.|++
T Consensus         3 ~~~~~v~viG~G~~G~~~a~~l-~~~G~~v~~~D~~~~~~~~~-------~l~-~G~~~~-~-g~~~-~~~~~~~d~vV~   70 (439)
T 2x5o_A            3 YQGKNVVIIGLGLTGLSCVDFF-LARGVTPRVMDTRMTPPGLD-------KLP-EAVERH-T-GSLN-DEWLMAADLIVA   70 (439)
T ss_dssp             CTTCCEEEECCHHHHHHHHHHH-HTTTCCCEEEESSSSCTTGG-------GSC-TTSCEE-E-SSCC-HHHHHTCSEEEE
T ss_pred             CCCCEEEEEeecHHHHHHHHHH-HhCCCEEEEEECCCCcchhH-------Hhh-CCCEEE-E-CCCc-HHHhccCCEEEe
Confidence            5689999999999999999987 68899999999875432111       111 222111 0 1112 455668999988


Q ss_pred             cCCCC---cc-------cccccCHH--HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          243 HPVLD---KT-------TYHLINKE--RLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       243 ~~pl~---~~-------t~~li~~~--~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      .....   |.       +..++.+.  ....++...+-|-=+.|..-...-|...|++.
T Consensus        71 s~gi~~~~p~~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~~  129 (439)
T 2x5o_A           71 SPGIALAHPSLSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKAA  129 (439)
T ss_dssp             CTTSCTTCHHHHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhc
Confidence            74332   22       11234432  11234545667777788887777666777653

>1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A*

Probab=93.30  E-value=0.22  Score=44.88  Aligned_cols=40  Identities=20%  Similarity=0.136  Sum_probs=33.3

Q ss_pred             cccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ..+.||++.|.| -|.||+.+|+.|+ .-|++|++.+++...
T Consensus        25 ~~~~~k~vlVTGas~gIG~~ia~~l~-~~G~~V~~~~r~~~~   65 (283)
T 1g0o_A           25 ASLEGKVALVTGAGRGIGREMAMELG-RRGCKVIVNYANSTE   65 (283)
T ss_dssp             GCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             cCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCchH
Confidence            457899999887 5789999999985 679999998887644

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=93.27  E-value=0.42  Score=50.07  Aligned_cols=118  Identities=14%  Similarity=0.164  Sum_probs=74.9

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh------h
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------R  235 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll------~  235 (342)
                      -.|++|.|.|. |.+|+...+. ++.+|++|++.+...+..  .        .. -+....-.....++.+.+      .
T Consensus       344 ~~G~~VLI~gaaGgvG~~aiql-Ak~~Ga~V~~t~~~~k~~--~--------l~-lga~~v~~~~~~~~~~~i~~~t~g~  411 (795)
T 3slk_A          344 RPGESLLVHSAAGGVGMAAIQL-ARHLGAEVYATASEDKWQ--A--------VE-LSREHLASSRTCDFEQQFLGATGGR  411 (795)
T ss_dssp             CTTCCEEEESTTBHHHHHHHHH-HHHTTCCEEEECCGGGGG--G--------SC-SCGGGEECSSSSTHHHHHHHHSCSS
T ss_pred             CCCCEEEEecCCCHHHHHHHHH-HHHcCCEEEEEeChHHhh--h--------hh-cChhheeecCChhHHHHHHHHcCCC
Confidence            36899999996 9999999998 589999999987554211  0        00 011100001122444333      2


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~  300 (342)
                      ..|+|+.++..  +    .-...++.++++..||.++.....+...+....  ..+....+|...
T Consensus       412 GvDvVld~~gg--~----~~~~~l~~l~~~Gr~v~iG~~~~~~~~~~~~~~--~~~~~~~~~l~~  468 (795)
T 3slk_A          412 GVDVVLNSLAG--E----FADASLRMLPRGGRFLELGKTDVRDPVEVADAH--PGVSYQAFDTVE  468 (795)
T ss_dssp             CCSEEEECCCT--T----TTHHHHTSCTTCEEEEECCSTTCCCHHHHHHHS--SSEEEEECCGGG
T ss_pred             CeEEEEECCCc--H----HHHHHHHHhcCCCEEEEeccccccCcccccccC--CCCEEEEeeccc
Confidence            58999998753  2    237789999999999999977665555443322  345555666543

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=93.24  E-value=0.12  Score=48.14  Aligned_cols=102  Identities=14%  Similarity=0.090  Sum_probs=63.3

Q ss_pred             CCCeEEEEecC-HHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCC----HHHHh--
Q 019387          164 KGQTVGVIGAG-RIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASS----MDEVL--  234 (342)
Q Consensus       164 ~gktvgIvG~G-~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----l~~ll--  234 (342)
                      .|++|.|.|.| .||..+++.+ +.. |++|++.+++++.....  ..+       +.... .... .+    +.++.  
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a-~~~~Ga~Vi~~~~~~~~~~~~--~~~-------g~~~~~~~~~-~~~~~~~~~~~~~  238 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDVREEAVEAA--KRA-------GADYVINASM-QDPLAEIRRITES  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEESSHHHHHHH--HHH-------TCSEEEETTT-SCHHHHHHHHTTT
T ss_pred             CCCEEEEECCCccHHHHHHHHH-HHcCCCeEEEEcCCHHHHHHH--HHh-------CCCEEecCCC-ccHHHHHHHHhcC
Confidence            47899999999 9999999985 777 99999999876542111  111       11100 0001 12    33333  


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc---ccCHHH
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP---VIDEVA  281 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~---~vd~~a  281 (342)
                      ...|+|+.+... +.+    -...++.++++..+|.++-..   .++...
T Consensus       239 ~~~d~vi~~~g~-~~~----~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~  283 (347)
T 1jvb_A          239 KGVDAVIDLNNS-EKT----LSVYPKALAKQGKYVMVGLFGADLHYHAPL  283 (347)
T ss_dssp             SCEEEEEESCCC-HHH----HTTGGGGEEEEEEEEECCSSCCCCCCCHHH
T ss_pred             CCceEEEECCCC-HHH----HHHHHHHHhcCCEEEEECCCCCCCCCCHHH
Confidence            257999988753 211    134567788899999887433   455443

>2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum}

Probab=93.22  E-value=0.73  Score=45.09  Aligned_cols=123  Identities=12%  Similarity=0.086  Sum_probs=67.6

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEE-EEcCC-------ch--hHHHHHHhhhhh---hhhccCC-CCcccc
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLI-YYDLY-------QA--TRLEKFVTAYGQ---FLKANGE-QPVTWK  225 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~-~~d~~-------~~--~~~~~~~~~~~~---~~~~~~~-~~~~~~  225 (342)
                      |.++.|+||.|-|+|++|+.+|+.| ...|++|+ +.|.+       .-  ..++...+.-..   .+..... .+ +..
T Consensus       247 G~~l~g~~vaVqG~GnVG~~~a~~L-~~~GakvVavsD~~G~i~dp~Gid~edl~~l~~~k~~~~g~v~~~~~~~~-~a~  324 (470)
T 2bma_A          247 NIPVEKQTAVVSGSGNVALYCVQKL-LHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSS-TAK  324 (470)
T ss_dssp             TCCGGGCEEEEECSSHHHHHHHHHH-HHTTCEECEEEETTEEEECSSCCCHHHHHHHHHHHTTTTCCGGGGGGTCS-SCE
T ss_pred             cCCcCCCEEEEECCcHHHHHHHHHH-HHCCCEEEEEEeCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHHhhcC-CcE
Confidence            3568899999999999999999997 68899998 34431       11  111111110000   0000000 00 001


Q ss_pred             ccCCHHHH-hhcCCEEEEcCCCCcccccccCHHHHhcCC-CC-cEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          226 RASSMDEV-LREADVISLHPVLDKTTYHLINKERLATMK-KE-AILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       226 ~~~~l~~l-l~~aDiV~l~~pl~~~t~~li~~~~l~~mk-~g-a~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ... -+++ -..||+++-|..     .+.|+.+....+. .+ .+++--+-+++ ..+| .+.|.+..|.
T Consensus       325 ~v~-~~~~~~~~~DI~iPcA~-----~~~I~~~na~~l~~~~ak~V~EgAN~p~-T~eA-~~~L~~rGIl  386 (470)
T 2bma_A          325 YFP-NEKPWGVPCTLAFPCAT-----QNDVDLDQAKLLQKNGCILVGEGANMPS-TVDA-INLFKSNNII  386 (470)
T ss_dssp             ECS-SCCTTSSCCSEEEECSS-----TTCBCSHHHHHHHHTTCCEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             Eec-CcCeeecCccEEEeccc-----cCcCCHHHHHHHHhcCcEEEEeCCCCCC-CHHH-HHHHHHCCcE
Confidence            111 0111 237999987763     4667766666651 12 36667777775 5555 6777766654

>1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A

Probab=93.20  E-value=0.17  Score=47.12  Aligned_cols=103  Identities=23%  Similarity=0.283  Sum_probs=60.7

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccc---cCCHHHHhhcCC
Q 019387          165 GQTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKR---ASSMDEVLREAD  238 (342)
Q Consensus       165 gktvgIvG-~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~ll~~aD  238 (342)
                      ..+|+|+| .|.+|..++..|+ ..|  -+|..+|..+... ..  ..    +.... .+.....   ..++++.+++||
T Consensus         8 ~mKI~ViGAaG~VG~~la~~L~-~~g~~~ev~l~Di~~~~~-~~--~d----L~~~~-~~~~v~~~~~t~d~~~al~gaD   78 (326)
T 1smk_A            8 GFKVAILGAAGGIGQPLAMLMK-MNPLVSVLHLYDVVNAPG-VT--AD----ISHMD-TGAVVRGFLGQQQLEAALTGMD   78 (326)
T ss_dssp             CEEEEEETTTSTTHHHHHHHHH-HCTTEEEEEEEESSSHHH-HH--HH----HHTSC-SSCEEEEEESHHHHHHHHTTCS
T ss_pred             CCEEEEECCCChHHHHHHHHHH-hCCCCCEEEEEeCCCcHh-HH--HH----hhccc-ccceEEEEeCCCCHHHHcCCCC
Confidence            35899999 8999999999874 456  6899999766411 11  00    11101 1111111   236778899999


Q ss_pred             EEEEcCCCCcccccc-------cC----H---HHHhcCCCCcEEEEcCCCcccCH
Q 019387          239 VISLHPVLDKTTYHL-------IN----K---ERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       239 iV~l~~pl~~~t~~l-------i~----~---~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      +|+++.+... ..+.       .|    .   +.+....+.+++++++  ..+|.
T Consensus        79 vVi~~ag~~~-~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~S--NPv~~  130 (326)
T 1smk_A           79 LIIVPAGVPR-KPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLIS--NPVNS  130 (326)
T ss_dssp             EEEECCCCCC-CSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHHH
T ss_pred             EEEEcCCcCC-CCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CchHH
Confidence            9999986432 2221       11    1   1222234678888874  45555

>1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A*

Probab=93.17  E-value=0.097  Score=46.75  Aligned_cols=36  Identities=22%  Similarity=0.180  Sum_probs=31.7

Q ss_pred             cCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       163 L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      +.||++.|.|-   |.||+.+|+.|+ ..|++|++.+++.
T Consensus         7 l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~   45 (265)
T 1qsg_A            7 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQND   45 (265)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHH-HTTCEEEEEESST
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHH-HCCCEEEEEcCcH
Confidence            67899999997   699999999985 6799999998875

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=93.10  E-value=0.04  Score=50.75  Aligned_cols=88  Identities=10%  Similarity=0.118  Sum_probs=54.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .|++|.|+|.|.+|+..++. ++.+|++|++.+ ++++. +. ...++       .... +   .+.+++-...|+|+-|
T Consensus       142 ~g~~VlV~GaG~vG~~a~ql-ak~~Ga~Vi~~~-~~~~~-~~-~~~lG-------a~~v-~---~d~~~v~~g~Dvv~d~  206 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQM-LNNAGYVVDLVS-ASLSQ-AL-AAKRG-------VRHL-Y---REPSQVTQKYFAIFDA  206 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHH-HHHHTCEEEEEC-SSCCH-HH-HHHHT-------EEEE-E---SSGGGCCSCEEEEECC
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCEEEEEE-ChhhH-HH-HHHcC-------CCEE-E---cCHHHhCCCccEEEEC
Confidence            58899999999999999998 589999999998 55432 11 11111       1000 0   0122223568898888


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      ... +.+     ...++.++++..++.++
T Consensus       207 ~g~-~~~-----~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          207 VNS-QNA-----AALVPSLKANGHIICIQ  229 (315)
T ss_dssp             -------------TTGGGEEEEEEEEEEC
T ss_pred             CCc-hhH-----HHHHHHhcCCCEEEEEe
Confidence            763 221     34577888888888884

>3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A*

Probab=93.10  E-value=0.67  Score=45.63  Aligned_cols=116  Identities=18%  Similarity=0.192  Sum_probs=70.5

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEE--------cCCch--hHHHHHHhhhhhhhhccCCCCccccccCCHH
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYY--------DLYQA--TRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~--------d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (342)
                      +|.|+||.|-|+|++|+..|+.| ..+|++|++.        |+..-  ..+..+....+..   .+...  .....+ +
T Consensus       241 ~l~g~tVaVQG~GNVG~~aa~~L-~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i---~~~~~--a~~~~~-~  313 (501)
T 3mw9_A          241 GFGDKTFVVQGFGNVGLHSMRYL-HRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTI---LGFPK--AKIYEG-S  313 (501)
T ss_dssp             SSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSS---TTCTT--SEEECS-C
T ss_pred             CcCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCe---ecccC--ceeecc-c
Confidence            58999999999999999999997 5789999863        22211  1122221111110   01000  011111 1


Q ss_pred             HHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          232 EVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       232 ~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      -+-..||+++-|.-     .+.|+.+....++ =.+++--+-+++ +.+| .+.|.+..|.
T Consensus       314 il~~~~DIliPcA~-----~n~I~~~na~~l~-akiV~EgAN~p~-T~eA-~~iL~~rGIl  366 (501)
T 3mw9_A          314 ILEVDCDILIPAAS-----EKQLTKSNAPRVK-AKIIAEGANGPT-TPEA-DKIFLERNIM  366 (501)
T ss_dssp             GGGSCCSEEEECSS-----SCCBCTTTGGGCC-CSEEECCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             cccccceEEeeccc-----cCccCHhHHHHcC-ceEEEeCCCCcC-CHHH-HHHHHHCCCE
Confidence            12246999997753     4778887777776 358888889884 5554 4567665553

>2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A

Probab=93.09  E-value=0.068  Score=46.63  Aligned_cols=77  Identities=12%  Similarity=0.145  Sum_probs=50.1

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       163 L~gktvgIvG-~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      +.++++.|.| -|.||+.+++.|+ .-|.  +|++.++++....+......       ...........++++++.+.|+
T Consensus        16 m~~~~vlVtGasg~iG~~l~~~L~-~~G~~~~V~~~~r~~~~~~~~~~~~~-------~~~~~D~~d~~~~~~~~~~~d~   87 (242)
T 2bka_A           16 MQNKSVFILGASGETGRVLLKEIL-EQGLFSKVTLIGRRKLTFDEEAYKNV-------NQEVVDFEKLDDYASAFQGHDV   87 (242)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHH-HHTCCSEEEEEESSCCCCCSGGGGGC-------EEEECCGGGGGGGGGGGSSCSE
T ss_pred             hcCCeEEEECCCcHHHHHHHHHHH-cCCCCCEEEEEEcCCCCccccccCCc-------eEEecCcCCHHHHHHHhcCCCE
Confidence            4578999999 6999999999985 5688  99999887643110000000       0000111223467778889999


Q ss_pred             EEEcCCCC
Q 019387          240 ISLHPVLD  247 (342)
Q Consensus       240 V~l~~pl~  247 (342)
                      |+.+....
T Consensus        88 vi~~ag~~   95 (242)
T 2bka_A           88 GFCCLGTT   95 (242)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCcc
Confidence            99988654

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=93.08  E-value=0.13  Score=48.27  Aligned_cols=37  Identities=19%  Similarity=0.426  Sum_probs=32.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcC-CcEEEEEcCCchh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGF-KMNLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~af-g~~V~~~d~~~~~  201 (342)
                      .|++|.|+|.|.+|...++. ++.+ |++|++.++++++
T Consensus       186 ~g~~VlV~GaG~vG~~avql-ak~~~Ga~Vi~~~~~~~~  223 (359)
T 1h2b_A          186 PGAYVAIVGVGGLGHIAVQL-LKVMTPATVIALDVKEEK  223 (359)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHHCCCEEEEEESSHHH
T ss_pred             CCCEEEEECCCHHHHHHHHH-HHHcCCCeEEEEeCCHHH
Confidence            47899999999999999998 5888 9999999987654

>1ebf_A Homoserine dehydrogenase; dinucleotide, NAD, dimer, oxidoreductase; HET: NAD; 2.30A {Saccharomyces cerevisiae} SCOP: c.2.1.3 d.81.1.2 PDB: 1ebu_A* 1tve_A* 1q7g_A*

Probab=93.07  E-value=0.14  Score=48.55  Aligned_cols=32  Identities=34%  Similarity=0.501  Sum_probs=23.6

Q ss_pred             eEEEEecCHHHHHHHHHHHhc-C--CcEEEE-EcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEG-F--KMNLIY-YDLY  198 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~a-f--g~~V~~-~d~~  198 (342)
                      +|||+|+|.||+.+++.+.+. .  +++|.+ +|..
T Consensus         6 ~vgIiG~G~VG~~~~~~l~~~~~g~~~~vvaV~d~~   41 (358)
T 1ebf_A            6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLLAEAE   41 (358)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEEECSS
T ss_pred             EEEEEecCHHHHHHHHHHHhcCCCCCEEEEEEEECC
Confidence            799999999999999987432 2  366654 5543

>2wyu_A Enoyl-[acyl carrier protein] reductase; oxidoreductase, fatty acid biosynthesis, oxidation reduction; 1.50A {Thermus thermophilus} PDB: 1ulu_A 2wyv_A* 2wyw_A* 2yw9_A*

Probab=93.00  E-value=0.073  Score=47.50  Aligned_cols=38  Identities=18%  Similarity=0.132  Sum_probs=32.7

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .+.||++.|.|-   |.||+.+|+.|+ .-|++|++.++..+
T Consensus         5 ~l~~k~vlVTGas~~~gIG~~ia~~l~-~~G~~V~~~~r~~~   45 (261)
T 2wyu_A            5 DLSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAER   45 (261)
T ss_dssp             CCTTCEEEEESCCSSSSHHHHHHHHHH-HHTCEEEEEESCGG
T ss_pred             CCCCCEEEEECCCCCCcHHHHHHHHHH-HCCCEEEEEcCCHH
Confidence            578999999997   699999999985 56999999988763

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=93.00  E-value=0.27  Score=45.57  Aligned_cols=94  Identities=16%  Similarity=0.130  Sum_probs=57.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEE-EEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh------hc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll------~~  236 (342)
                      .|++|.|.|.|.+|...++. ++.+|+++ ++.++++++. + +...+       +....-.....+..+..      ..
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~-ak~~G~~~vi~~~~~~~k~-~-~a~~l-------Ga~~~i~~~~~~~~~~~~~~~~~~g  229 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQC-AVALGAKSVTAIDISSEKL-A-LAKSF-------GAMQTFNSSEMSAPQMQSVLRELRF  229 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHH-HHHTTCSEEEEEESCHHHH-H-HHHHT-------TCSEEEETTTSCHHHHHHHHGGGCS
T ss_pred             CCCEEEEECCCCcchHHHHH-HHHcCCcEEEEEechHHHH-H-HHHHc-------CCeEEEeCCCCCHHHHHHhhcccCC
Confidence            58899999999999999998 48999865 6778776542 1 11111       21111111112333332      23


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .|+|+-+... +++    -...++.+++|..++.++
T Consensus       230 ~d~v~d~~G~-~~~----~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          230 NQLILETAGV-PQT----VELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             SEEEEECSCS-HHH----HHHHHHHCCTTCEEEECC
T ss_pred             cccccccccc-cch----hhhhhheecCCeEEEEEe
Confidence            6888877652 221    235678899999888876

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=92.99  E-value=0.16  Score=47.45  Aligned_cols=93  Identities=17%  Similarity=0.190  Sum_probs=60.0

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh------hc
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll------~~  236 (342)
                      .|++|.|+| .|.||..+++.+ +..|++|++. .+++. .+. ...++       ...  +....++.+.+      ..
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a-~~~Ga~Vi~~-~~~~~-~~~-~~~lG-------a~~--i~~~~~~~~~~~~~~~~~g  216 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIA-LARGARVFAT-ARGSD-LEY-VRDLG-------ATP--IDASREPEDYAAEHTAGQG  216 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEE-ECHHH-HHH-HHHHT-------SEE--EETTSCHHHHHHHHHTTSC
T ss_pred             CCCEEEEecCCCHHHHHHHHHH-HHCCCEEEEE-eCHHH-HHH-HHHcC-------CCE--eccCCCHHHHHHHHhcCCC
Confidence            588999999 899999999985 8999999988 54433 221 12221       111  11122333332      25


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      .|+|+.|... +     .-...+..++++..+|.++-..
T Consensus       217 ~D~vid~~g~-~-----~~~~~~~~l~~~G~iv~~g~~~  249 (343)
T 3gaz_A          217 FDLVYDTLGG-P-----VLDASFSAVKRFGHVVSCLGWG  249 (343)
T ss_dssp             EEEEEESSCT-H-----HHHHHHHHEEEEEEEEESCCCS
T ss_pred             ceEEEECCCc-H-----HHHHHHHHHhcCCeEEEEcccC
Confidence            8999988762 1     2345677888999999886444

>3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT}

Probab=92.98  E-value=0.09  Score=47.23  Aligned_cols=67  Identities=12%  Similarity=0.165  Sum_probs=45.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhc-CCEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLRE-ADVIS  241 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~-aDiV~  241 (342)
                      +++|.|.|.|.||+.+++.| ..-|.+|++.++..+...             .+...  .......++++++.. +|+|+
T Consensus         3 ~~~ilVtGaG~iG~~l~~~L-~~~g~~V~~~~r~~~~~~-------------~~~~~~~~Dl~d~~~~~~~~~~~~d~vi   68 (286)
T 3gpi_A            3 LSKILIAGCGDLGLELARRL-TAQGHEVTGLRRSAQPMP-------------AGVQTLIADVTRPDTLASIVHLRPEILV   68 (286)
T ss_dssp             CCCEEEECCSHHHHHHHHHH-HHTTCCEEEEECTTSCCC-------------TTCCEEECCTTCGGGCTTGGGGCCSEEE
T ss_pred             CCcEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCccccc-------------cCCceEEccCCChHHHHHhhcCCCCEEE
Confidence            57899999999999999998 467999999988754310             00000  011122455667777 99998


Q ss_pred             EcCC
Q 019387          242 LHPV  245 (342)
Q Consensus       242 l~~p  245 (342)
                      .+..
T Consensus        69 h~a~   72 (286)
T 3gpi_A           69 YCVA   72 (286)
T ss_dssp             ECHH
T ss_pred             EeCC
Confidence            7764

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=92.97  E-value=0.24  Score=46.55  Aligned_cols=94  Identities=13%  Similarity=0.158  Sum_probs=60.0

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhc-CCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-----c
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEG-FKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----E  236 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~a-fg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-----~  236 (342)
                      .|++|.|+| .|.||...++. ++. .|++|++.++++++. +. ...+       +... .+....++.+.+.     .
T Consensus       171 ~g~~VlV~Ga~G~vG~~a~ql-ak~~~g~~Vi~~~~~~~~~-~~-~~~l-------Gad~-vi~~~~~~~~~v~~~~~~g  239 (363)
T 4dvj_A          171 AAPAILIVGGAGGVGSIAVQI-ARQRTDLTVIATASRPETQ-EW-VKSL-------GAHH-VIDHSKPLAAEVAALGLGA  239 (363)
T ss_dssp             SEEEEEEESTTSHHHHHHHHH-HHHHCCSEEEEECSSHHHH-HH-HHHT-------TCSE-EECTTSCHHHHHHTTCSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHH-HHHhcCCEEEEEeCCHHHH-HH-HHHc-------CCCE-EEeCCCCHHHHHHHhcCCC
Confidence            588999999 99999999998 477 599999999876542 11 1111       2111 1111223444332     5


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|+|+.|.... .    .-...++.++++..+|.++.
T Consensus       240 ~Dvvid~~g~~-~----~~~~~~~~l~~~G~iv~~g~  271 (363)
T 4dvj_A          240 PAFVFSTTHTD-K----HAAEIADLIAPQGRFCLIDD  271 (363)
T ss_dssp             EEEEEECSCHH-H----HHHHHHHHSCTTCEEEECSC
T ss_pred             ceEEEECCCch-h----hHHHHHHHhcCCCEEEEECC
Confidence            78888877521 1    12456788899988888853

>2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A*

Probab=92.94  E-value=0.39  Score=44.21  Aligned_cols=112  Identities=14%  Similarity=0.202  Sum_probs=59.9

Q ss_pred             eEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|+|||.|.||+++|-.|+ +++--++..||...........+- .+-...-... .......+. +.+++||+|+++.-
T Consensus         2 KV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL-~h~~~~~~~~-~~i~~~~d~-~~~~~aDvVvitAG   78 (294)
T 2x0j_A            2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDL-AHAAAGIDKY-PKIVGGADY-SLLKGSEIIVVTAG   78 (294)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHH-HHHHGGGTCC-CEEEEESCG-GGGTTCSEEEECCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhh-hcccccCCCC-CeEecCCCH-HHhCCCCEEEEecC
Confidence            7999999999999998753 344458999998764221111110 0000000000 011112233 45789999998863


Q ss_pred             --CCc-ccc-ccc--CH-------HHHhcCCCCcEEEEcCCCcccCHHHHH
Q 019387          246 --LDK-TTY-HLI--NK-------ERLATMKKEAILVNCSRGPVIDEVALV  283 (342)
Q Consensus       246 --l~~-~t~-~li--~~-------~~l~~mk~ga~lINvaRG~~vd~~aL~  283 (342)
                        ..| .|| .++  |.       +.+..-.|+++++.++-  .+|.-..+
T Consensus        79 ~prkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvsN--Pvd~~t~i  127 (294)
T 2x0j_A           79 LARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN--PMDVMTYI  127 (294)
T ss_dssp             CCCCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS--SHHHHHHH
T ss_pred             CCCCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEecC--cchhhHHh
Confidence              222 122 111  11       23444567888888854  45555444

>1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2

Probab=92.89  E-value=0.34  Score=43.75  Aligned_cols=77  Identities=13%  Similarity=0.191  Sum_probs=48.6

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchh----HHHHHHhhhhhhhhccCCCCc--cccccCCHHHHhhcC
Q 019387          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT----RLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREA  237 (342)
Q Consensus       165 gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~a  237 (342)
                      .++|.|.| .|.||+.+++.|+ .-|.+|.+.++....    ..+.. ..+    ...+....  ......++.++++++
T Consensus         4 ~~~ilVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~~~~~-~~~----~~~~~~~~~~D~~d~~~l~~~~~~~   77 (313)
T 1qyd_A            4 KSRVLIVGGTGYIGKRIVNASI-SLGHPTYVLFRPEVVSNIDKVQML-LYF----KQLGAKLIEASLDDHQRLVDALKQV   77 (313)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHH-HTTCCEEEECCSCCSSCHHHHHHH-HHH----HTTTCEEECCCSSCHHHHHHHHTTC
T ss_pred             CCEEEEEcCCcHHHHHHHHHHH-hCCCcEEEEECCCcccchhHHHHH-HHH----HhCCeEEEeCCCCCHHHHHHHHhCC
Confidence            46899999 5999999999984 568999999987421    11110 000    01111111  112234677889999


Q ss_pred             CEEEEcCCCC
Q 019387          238 DVISLHPVLD  247 (342)
Q Consensus       238 DiV~l~~pl~  247 (342)
                      |+|+.+.+..
T Consensus        78 d~vi~~a~~~   87 (313)
T 1qyd_A           78 DVVISALAGG   87 (313)
T ss_dssp             SEEEECCCCS
T ss_pred             CEEEECCccc
Confidence            9999887643

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=92.82  E-value=0.097  Score=46.65  Aligned_cols=40  Identities=35%  Similarity=0.383  Sum_probs=34.5

Q ss_pred             cccCCCeEEEEec-C-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          161 NLLKGQTVGVIGA-G-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~L~gktvgIvG~-G-~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ..+.||++.|.|- | .||+.+|+.|+ ..|++|++.+++.+.
T Consensus        18 ~~l~~k~vlITGasg~GIG~~~a~~l~-~~G~~V~~~~r~~~~   59 (266)
T 3o38_A           18 GLLKGKVVLVTAAAGTGIGSTTARRAL-LEGADVVISDYHERR   59 (266)
T ss_dssp             STTTTCEEEESSCSSSSHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHH-HCCCEEEEecCCHHH
Confidence            3588999999998 8 59999999985 679999999988654

>2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa}

Probab=92.75  E-value=0.26  Score=44.46  Aligned_cols=76  Identities=12%  Similarity=0.140  Sum_probs=47.8

Q ss_pred             CCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCc-h-----hHHHHHHhhhhhhhhccCCCCc--cccccCCHHHHhh
Q 019387          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ-A-----TRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLR  235 (342)
Q Consensus       165 gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~-~-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~  235 (342)
                      +++|.|.|- |.||+.+++.|+ .-|.+|.+.++.+ .     ...+.. ..+    ...+....  ......++.++++
T Consensus         2 ~~~vlVtGatG~iG~~l~~~L~-~~g~~V~~~~R~~~~~~~~~~~~~~~-~~l----~~~~v~~v~~D~~d~~~l~~~~~   75 (307)
T 2gas_A            2 ENKILILGPTGAIGRHIVWASI-KAGNPTYALVRKTITAANPETKEELI-DNY----QSLGVILLEGDINDHETLVKAIK   75 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHH-HHTCCEEEEECCSCCSSCHHHHHHHH-HHH----HHTTCEEEECCTTCHHHHHHHHT
T ss_pred             CcEEEEECCCchHHHHHHHHHH-hCCCcEEEEECCCcccCChHHHHHHH-HHH----HhCCCEEEEeCCCCHHHHHHHHh
Confidence            578999996 999999999985 5588999988875 1     111110 000    01111111  1112346778899


Q ss_pred             cCCEEEEcCCC
Q 019387          236 EADVISLHPVL  246 (342)
Q Consensus       236 ~aDiV~l~~pl  246 (342)
                      ++|+|+.+.+.
T Consensus        76 ~~d~vi~~a~~   86 (307)
T 2gas_A           76 QVDIVICAAGR   86 (307)
T ss_dssp             TCSEEEECSSS
T ss_pred             CCCEEEECCcc
Confidence            99999988764

>2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A

Probab=92.71  E-value=0.21  Score=45.13  Aligned_cols=73  Identities=18%  Similarity=0.143  Sum_probs=48.0

Q ss_pred             CCeEEEEec-CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc--cccccCCHHHHhhcCCEE
Q 019387          165 GQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvgIvG~-G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~aDiV  240 (342)
                      +++|.|.|- |.||+.+++.|+ .-| .+|.+.++++.........       ..+....  .+....+++++++++|+|
T Consensus         5 ~~~ilVtGatG~iG~~l~~~L~-~~g~~~V~~~~R~~~~~~~~~l~-------~~~~~~~~~D~~d~~~l~~~~~~~d~v   76 (299)
T 2wm3_A            5 KKLVVVFGGTGAQGGSVARTLL-EDGTFKVRVVTRNPRKKAAKELR-------LQGAEVVQGDQDDQVIMELALNGAYAT   76 (299)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HHCSSEEEEEESCTTSHHHHHHH-------HTTCEEEECCTTCHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCCchHHHHHHHHHH-hcCCceEEEEEcCCCCHHHHHHH-------HCCCEEEEecCCCHHHHHHHHhcCCEE
Confidence            578999998 999999999985 457 8999998876542111100       0111111  111234677889999999


Q ss_pred             EEcCC
Q 019387          241 SLHPV  245 (342)
Q Consensus       241 ~l~~p  245 (342)
                      +.+.+
T Consensus        77 i~~a~   81 (299)
T 2wm3_A           77 FIVTN   81 (299)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            98865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	342
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	2e-28
d1ygya1	184	c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase	8e-20
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	2e-19
d2naca1	188	c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom	3e-19
d1sc6a1	188	c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase	8e-19
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	3e-15
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	9e-15
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	1e-13
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	7e-12
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	1e-10
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	3e-10
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	8e-10
d1li4a1	163	c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas	3e-09
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	3e-08
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	9e-08
d1sc6a2	132	c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh	2e-07
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	2e-06
d1pjqa1	113	c.2.1.11 (A:1-113) Siroheme synthase CysG, domain	6e-05

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score =  107 bits (267), Expect = 2e-28
 Identities = 54/182 (29%), Positives = 89/182 (48%), Gaps = 15/182 (8%)

Query: 119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGS 178
           +T  TAE+A  L L +ARR  E ++ +R   + GW P   VG  L  +T+G+ G G IG 
Sbjct: 1   VTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQ 60

Query: 179 AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD 238
           A A+   +GF M++ Y+D ++A               ++ E         S+D +L  + 
Sbjct: 61  ALAKRA-QGFDMDIDYFDTHRA--------------SSSDEASYQATFHDSLDSLLSVSQ 105

Query: 239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV 298
             SL+      T +  NK  + ++ + AI+VN +RG ++D   +V  L+   +   G DV
Sbjct: 106 FFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDV 165

Query: 299 FE 300
           F 
Sbjct: 166 FA 167

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 83.5 bits (205), Expect = 8e-20
 Identities = 60/181 (33%), Positives = 87/181 (48%), Gaps = 20/181 (11%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
             + AE A +L LAA+R+I  AD  +R      W  + F G  + G+TVGV+G GRIG  
Sbjct: 2   IHSAAEHALALLLAASRQIPAADASLREH---TWKRSSFSGTEIFGKTVGVVGLGRIGQL 58

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
            A+ +   F   ++ YD Y +      +                     S+D++L  AD 
Sbjct: 59  VAQRIAA-FGAYVVAYDPYVSPARAAQLGIE----------------LLSLDDLLARADF 101

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           IS+H      T  LI+KE LA  K   I+VN +RG ++DE AL + +    +   GLDVF
Sbjct: 102 ISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVF 161

Query: 300 E 300
            
Sbjct: 162 A 162

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 82.8 bits (203), Expect = 2e-19
 Identities = 50/191 (26%), Positives = 80/191 (41%), Gaps = 20/191 (10%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLY----DGWLPNLFVGNLLKGQTVGVIGAGRI 176
           E TA+      L   RR     + +R G      +           ++G+T+G+IG GR+
Sbjct: 1   EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRV 60

Query: 177 GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE 236
           G A A          L Y                              +R S++ ++L  
Sbjct: 61  GQAVALRAKAFGFNVLFYDPYLSDGVERAL----------------GLQRVSTLQDLLFH 104

Query: 237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL 296
           +D ++LH  L++  +HLIN   +  M++ A LVN +RG ++DE AL + LK+  +    L
Sbjct: 105 SDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAAL 164

Query: 297 DVFEVTELGFS 307
           DV E     FS
Sbjct: 165 DVHESEPFSFS 175

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 82.4 bits (202), Expect = 3e-19
 Identities = 43/179 (24%), Positives = 79/179 (44%), Gaps = 16/179 (8%)

Query: 122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYA 181
           + AE    + L+  R  + + E+ R G ++     +     L+   VG + AGRIG A  
Sbjct: 2   SVAEHVVMMILSLVRNYLPSHEWARKGGWN-IADCVSHAYDLEAMHVGTVAAGRIGLAVL 60

Query: 182 RMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS 241
           R +   F ++L Y D ++                 + E+ +     ++ +++    DV++
Sbjct: 61  RRL-APFDVHLHYTDRHRLPE--------------SVEKELNLTWHATREDMYPVCDVVT 105

Query: 242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           L+  L   T H+IN E L   K+ A +VN +RG + D  A+   L+   +     DV+ 
Sbjct: 106 LNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWF 164

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 80.8 bits (198), Expect = 8e-19
 Identities = 34/181 (18%), Positives = 67/181 (37%), Gaps = 22/181 (12%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
           T + AEL     L   R + EA+     G+ +      F                   + 
Sbjct: 2   TRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSF------------------EAR 43

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
             ++ + G+        +   +          +     G           + ++L  +DV
Sbjct: 44  GKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLPLGNATQVQH----LSDLLNMSDV 99

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           +SLH   + +T +++  + ++ MK  ++L+N SRG V+D  AL + L    +    +DVF
Sbjct: 100 VSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVF 159

Query: 300 E 300
            
Sbjct: 160 P 160

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 69.3 bits (169), Expect = 3e-15
 Identities = 24/128 (18%), Positives = 53/128 (41%), Gaps = 5/128 (3%)

Query: 15  KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDW 74
           K +++ T P+P    +     +   V         ++++++I       D ++  L E  
Sbjct: 1   KKKILITWPLP-EAAMARA-RESYDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKC 56

Query: 75  GETLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAA 134
            + +   +     K  S  ++G++++D++A    GI VGN P   T+   ++A   +   
Sbjct: 57  RKEVIDRIPE-NIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLI 115

Query: 135 ARRIVEAD 142
                 AD
Sbjct: 116 DALFGGAD 123

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 68.2 bits (166), Expect = 9e-15
 Identities = 19/131 (14%), Positives = 40/131 (30%), Gaps = 5/131 (3%)

Query: 18  VVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGET 77
               +      +     +    +E  T+       E+ +       DG+    T  +   
Sbjct: 5   AYGARVDEIQYFKQWAKDTGNTLEYHTEFLD----ENTVEWAKG-FDGINSLQTTPYAAG 59

Query: 78  LFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR 137
           +F  +   G K  +   VG +N+D+ A  +YGI + N P         +           
Sbjct: 60  VFEKMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDF 119

Query: 138 IVEADEFMRAG 148
           + + +      
Sbjct: 120 LTKGETSTEVT 130

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 65.2 bits (158), Expect = 1e-13
 Identities = 26/120 (21%), Positives = 48/120 (40%), Gaps = 7/120 (5%)

Query: 33  LIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN 92
            +     V            + ++A + +  D ++ +        + AA  +   K  + 
Sbjct: 18  ALGDQVEVRWVDG----PDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPK--LKIVAR 70

Query: 93  MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDG 152
             VG +NVDV+AA   G+ V N P   +   A+  A   +A + R+  A EF+   +  G
Sbjct: 71  AGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVG 130

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 59.9 bits (145), Expect = 7e-12
 Identities = 23/109 (21%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 30  INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKA 89
           +    +    VE+      +L+  + +AL     DGV+     D+      AL+  G   
Sbjct: 16  LKEWEDAHKDVEV-EYTDKLLT-PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITK 72

Query: 90  FSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRI 138
            S   VG +N+D+  A + G  + N P     +    A    +  A   
Sbjct: 73  MSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDN 118

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 28/132 (21%), Positives = 48/132 (36%), Gaps = 13/132 (9%)

Query: 24  MPGTRWINLLIEQDCRVEICTQKK-------TILSVEDIIALIGDKCDGVIGQLTEDWGE 76
           MP    + LL  +DC VE+   K           S ++I   + ++  G +   T     
Sbjct: 1   MP---LVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTR 57

Query: 77  TLFAALSRAGGKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR 136
                      +    +  G++N+D+ +A   GIAV N P     +  + +  +   AAR
Sbjct: 58  EDLEKFKAL--RIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVYS-EQASIEMREEAAR 114

Query: 137 RIVEADEFMRAG 148
            I  A       
Sbjct: 115 EIRRAITGRIPD 126

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 56.7 bits (135), Expect = 3e-10
 Identities = 47/181 (25%), Positives = 76/181 (41%), Gaps = 21/181 (11%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
              AE AA  +    R+    DE +             +G  ++ Q VGV+G G IG  +
Sbjct: 2   NAIAEHAAIQAARILRQDKAMDEKVARH---DLRWAPTIGREVRDQVVGVVGTGHIGQVF 58

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
            ++M       + Y                                  S+D++ ++ADVI
Sbjct: 59  MQIMEGFGAKVITYDIFRNPE------------------LEKKGYYVDSLDDLYKQADVI 100

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
           SLH        H+IN E +A MK++ ++VN SRGP++D  A++  L    +F   +DV+E
Sbjct: 101 SLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE 160

Query: 301 V 301
            
Sbjct: 161 G 161

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 55.6 bits (132), Expect = 8e-10
 Identities = 41/182 (22%), Positives = 73/182 (40%), Gaps = 21/182 (11%)

Query: 120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSA 179
               AE A + +L   R + +    ++AG Y+     +       GQ    +        
Sbjct: 2   PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKEL---GQQTVGVMGTGHIGQ 58

Query: 180 YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV 239
            A  + +GF   +I YD Y                              S++++ +++DV
Sbjct: 59  VAIKLFKGFGAKVIAYDPYPMKGDHP------------------DFDYVSLEDLFKQSDV 100

Query: 240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF 299
           I LH    +   H+IN+     MK  AI++N +R  +ID  A++ +LK   +  VG+D +
Sbjct: 101 IDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTY 160

Query: 300 EV 301
           E 
Sbjct: 161 EY 162

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 3e-09
 Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 21/143 (14%)

Query: 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGE 219
             ++ G+   V G G +G   A+ +  GF   +I  ++     L+  +   G        
Sbjct: 19  DVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAM--EGY------- 68

Query: 220 QPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVID 278
                   ++MDE  +E ++             +I       MK +AI+ N       ID
Sbjct: 69  ------EVTTMDEACQEGNIFVTTT----GCIDIILGRHFEQMKDDAIVCNIGHFDVEID 118

Query: 279 EVALVEHLKQNPMFRVGLDVFEV 301
              L E+  +    +  +D + +
Sbjct: 119 VKWLNENAVEKVNIKPQVDRYRL 141

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 50.7 bits (121), Expect = 3e-08
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 8/71 (11%)

Query: 88  KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELA--------ASLSLAAARRIV 139
           K      +G ++VD+ +A    + V       + T    A                R I 
Sbjct: 115 KLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIR 174

Query: 140 EADEFMRAGLY 150
           +    ++ G  
Sbjct: 175 DEYLIVQGGAL 185

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 49.4 bits (116), Expect = 9e-08
 Identities = 39/183 (21%), Positives = 67/183 (36%), Gaps = 25/183 (13%)

Query: 121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAY 180
           +  AE A +L LA  +RI++  E M+ G Y   +        L       +         
Sbjct: 2   DAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-----IPLIQGEKVAVLGLGEIGTR 56

Query: 181 ARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI 240
              ++      +  +                        +   W+  +S++E LREA   
Sbjct: 57  VGKILAALGAQVRGFSRTP--------------------KEGPWRFTNSLEEALREARAA 96

Query: 241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE 300
                L+K T  L+  + LA M ++A+ VN  R  V+D   ++  LK+ P F    DV+ 
Sbjct: 97  VCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWW 156

Query: 301 VTE 303
              
Sbjct: 157 GRN 159

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

 Score = 47.4 bits (112), Expect = 2e-07
 Identities = 24/108 (22%), Positives = 34/108 (31%), Gaps = 3/108 (2%)

Query: 41  EICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAVGYNNV 100
                 K  L  E +   I D    +   L      T     +     A    A+G N V
Sbjct: 27  TNIEFHKGALDDEQLKESIRD-AHFIG--LRSRTHLTEDVINAAEKLVAIGAFAIGTNQV 83

Query: 101 DVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAG 148
           D++AA K GI V N P   T+   E           +  +    + A 
Sbjct: 84  DLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 131

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 8/96 (8%), Positives = 19/96 (19%), Gaps = 31/96 (32%)

Query: 87  GKAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMR 146
            K    +  G +++   +     + V    G        +   + + A R          
Sbjct: 51  LKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVR---------- 99

Query: 147 AGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYAR 182
                                +     G      A+
Sbjct: 100 --------------------NLITYATGGRPRNIAK 115

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

 Score = 39.7 bits (92), Expect = 6e-05
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 16/109 (14%)

Query: 163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV 222
           L+ +   ++G G +    AR+++E                    +T              
Sbjct: 10  LRDRDCLIVGGGDVAERKARLLLE----------------AGARLTVNALTFIPQFTVWA 53

Query: 223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNC 271
                + ++    E  + S    +  T    +N+      +   I  N 
Sbjct: 54  NEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNV 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	342
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	100.0
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	100.0
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	100.0
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	100.0
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	100.0
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	100.0
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	100.0
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	100.0
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.91
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.87
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.85
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.85
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.83
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.78
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.77
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.76
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	99.72
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	99.51
d1vpda2	161	Hydroxyisobutyrate dehydrogenase {Salmonella typhi	99.34
d3cuma2	162	Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru	99.24
d2pgda2	176	6-phosphogluconate dehydrogenase {Sheep (Ovis orie	99.11
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	98.96
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	98.92
d2cvza2	156	Hydroxyisobutyrate dehydrogenase {Thermus thermoph	98.84
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	98.84
d1i36a2	152	Conserved hypothetical protein MTH1747 {Archaeon M	98.84
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	98.77
d2ahra2	152	Pyrroline-5-carboxylate reductase ProC {Streptococ	98.75
d1pgja2	178	6-phosphogluconate dehydrogenase {Trypanosoma bruc	98.71
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	98.59
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	98.57
d1gpja2	159	Glutamyl tRNA-reductase middle domain {Archaeon Me	98.51
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	98.47
d2i76a2	153	Hypothetical protein TM1727 {Thermotoga maritima [	98.41
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	98.4
d1yqga2	152	Pyrroline-5-carboxylate reductase ProC {Neisseria	98.14
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	98.12
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	98.03
d1np3a2	182	Class I ketol-acid reductoisomerase (KARI) {Pseudo	98.03
d1b0aa1	166	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.99
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	97.98
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	97.97
d1a4ia1	170	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.88
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	97.86
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	97.84
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	97.82
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	97.78
d1qmga2	226	Class II ketol-acid reductoisomerase (KARI) {Spina	97.77
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	97.71
d1x7da_	340	Ornithine cyclodeaminase {Pseudomonas putida [TaxI	97.71
d1edza1	171	Methylenetetrahydrofolate dehydrogenase/cyclohydro	97.69
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	97.65
d1b26a1	234	Glutamate dehydrogenase {Thermotoga maritima [TaxI	97.55
d1dlja2	196	UDP-glucose dehydrogenase (UDPGDH) {Streptococcus	97.5
d1v9la1	242	Glutamate dehydrogenase {Pyrobaculum islandicum [T	97.5
d1nyta1	170	Shikimate 5-dehydrogenase AroE {Escherichia coli [	97.48
d1vi2a1	182	Putative shikimate dehydrogenase YdiB {Escherichia	97.46
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	97.44
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	97.36
d1omoa_	320	Archaeal alanine dehydrogenase {Archaeon Archaeogl	97.36
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	97.32
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	97.3
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	97.22
d1gtma1	239	Glutamate dehydrogenase {Archaeon Pyrococcus furio	97.18
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	97.18
d1hwxa1	293	Glutamate dehydrogenase {Cow (Bos taurus) [TaxId:	97.17
d1pzga1	154	Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5	97.17
d1f06a1	170	Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb	97.16
d1ldna1	148	Lactate dehydrogenase {Bacillus stearothermophilus	97.15
d1tlta1	164	Virulence factor MviM {Escherichia coli [TaxId: 56	97.15
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	97.14
d1nvta1	177	Shikimate 5-dehydrogenase AroE {Archaeon Methanoco	97.13
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	97.1
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	97.09
d1hyha1	146	L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La	97.08
d1guza1	142	Malate dehydrogenase {Chlorobium vibrioforme [TaxI	97.05
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	96.89
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	96.89
d1mv8a3	136	GDP-mannose 6-dehydrogenase, GDP-binding domain {P	96.88
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	96.86
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	96.82
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	96.82
d1a5za1	140	Lactate dehydrogenase {Thermotoga maritima [TaxId:	96.78
d1nvmb1	157	Acetaldehyde dehydrogenase (acylating) {Pseudomona	96.75
d1y6ja1	142	Lactate dehydrogenase {Clostridium thermocellum [T	96.75
d1ez4a1	146	Lactate dehydrogenase {Lactobacillus pentosus [Tax	96.7
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	96.68
d1bgva1	255	Glutamate dehydrogenase {Clostridium symbiosum [Ta	96.67
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	96.65
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	96.65
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.62
d2b0ja2	242	5,10-methenyltetrahydromethanopterin hydrogenase,	96.58
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	96.5
d1s6ya1	169	6-phospho-beta-glucosidase {Bacillus stearothermop	96.5
d1t2da1	150	Lactate dehydrogenase {Malaria parasite (Plasmodiu	96.46
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	96.46
d1i0za1	160	Lactate dehydrogenase {Human (Homo sapiens), heart	96.45
d1pvva2	163	Ornithine transcarbamoylase {Archaeon Pyrococcus f	96.43
d1zh8a1	181	Hypothetical protein TM0312 {Thermotoga maritima [	96.3
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.21
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	96.15
d1ojua1	142	Malate dehydrogenase {Archaeon Archaeoglobus fulgi	96.08
d1otha2	170	Ornithine transcarbamoylase {Human (Homo sapiens)	96.08
d2ldxa1	159	Lactate dehydrogenase {Mouse (Mus musculus) [TaxId	96.06
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	96.06
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	96.02
d1hdoa_	205	Biliverdin IX beta reductase {Human (Homo sapiens)	96.01
d1npya1	167	Shikimate 5-dehydrogenase-like protein HI0607 {Hae	95.98
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	95.98
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	95.98
d1llda1	143	Lactate dehydrogenase {Bifidobacterium longum, str	95.92
d1mlda1	144	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	95.88
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	95.81
d1hyea1	145	MJ0490, lactate/malate dehydrogenase {Archaeon Met	95.79
d1vlva2	161	Ornithine transcarbamoylase {Thermotoga maritima [	95.69
d1up7a1	162	6-phospho-beta-glucosidase {Thermotoga maritima [T	95.65
d1dxha2	185	Ornithine transcarbamoylase {Pseudomonas aeruginos	95.6
d1vjta1	193	Putative alpha-glucosidase TM0752 {Thermotoga mari	95.58
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.57
d1ml4a2	157	Aspartate carbamoyltransferase catalytic subunit {	95.52
d1obba1	171	Alpha-glucosidase AglA {Thermotoga maritima [TaxId	95.51
d1pg5a2	153	Aspartate carbamoyltransferase catalytic subunit {	95.48
d1y81a1	116	Hypothetical protein PF0725 {Pyrococcus furiosus [	95.47
d1iuka_	136	Hypothetical protein TT1466 {Thermus thermophilus	95.42
d1o6za1	142	Malate dehydrogenase {Archaeon Haloarcula marismor	95.41
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	95.23
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	95.21
d1dlja3	108	UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD	95.05
d2cmda1	145	Malate dehydrogenase {Escherichia coli [TaxId: 562	95.01
d1lc0a1	172	Biliverdin reductase {Rat (Rattus norvegicus) [Tax	94.89
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	94.85
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.83
d1vl6a1	222	Malate oxidoreductase (malic enzyme) {Thermotoga m	94.78
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	94.76
d1diha1	162	Dihydrodipicolinate reductase {Escherichia coli [T	94.76
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	94.62
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	94.56
d1tuga1	310	Aspartate carbamoyltransferase catalytic subunit {	94.48
d1j6ua1	89	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	94.48
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	94.44
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	94.36
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	94.25
d2d59a1	139	Hypothetical protein PH1109 {Pyrococcus horikoshii	94.15
d2csua1	129	Acetate-CoA ligase alpha chain, AcdA, N-terminal d	94.11
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	94.03
d1t4ba1	146	Aspartate beta-semialdehyde dehydrogenase {Escheri	94.03
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	94.01
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	93.89
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	93.85
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	93.84
d1ekxa2	160	Aspartate carbamoyltransferase catalytic subunit {	93.79
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	93.71
d1u8xx1	167	Maltose-6'-phosphate glucosidase GlvA {Bacillus su	93.7
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	93.7
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	93.54
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.52
d1yovb1	426	UBA3 {Human (Homo sapiens) [TaxId: 9606]}	93.5
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	93.47
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	93.45
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	93.37
d1duvg2	183	Ornithine transcarbamoylase {Escherichia coli [Tax	93.22
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	93.15
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	93.0
d1vkna1	176	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	92.99
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	92.93
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	92.77
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	92.72
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	92.64
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	92.62
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	92.56
d2nvwa1	237	Galactose/lactose metabolism regulatory protein GA	92.55
d2at2a2	151	Aspartate carbamoyltransferase catalytic subunit {	92.42
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	92.37
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	92.37
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	92.36
d2pd4a1	274	Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2	92.31
d1l7da2	194	Nicotinamide nucleotide transhydrogenase dI compon	92.26
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	92.25
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.21
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	92.16
d2cvoa1	183	Putative semialdehyde dehydrogenase {Rice (Oryza s	92.06
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	92.04
d2h7ma1	268	Enoyl-ACP reductase {Mycobacterium tuberculosis, T	91.96
d2g17a1	179	N-acetyl-gamma-glutamyl-phosphate reductase ArgC {	91.96
d2gz1a1	154	Aspartate beta-semialdehyde dehydrogenase {Strepto	91.95
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	91.94
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	91.94
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	91.93
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	91.83
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	91.4
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	91.38
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	91.37
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.3
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	91.04
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	90.97
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	90.86
d7mdha1	175	Malate dehydrogenase {Sorghum (Sorghum vulgare), c	90.72
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	90.63
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	90.46
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.33
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	90.32
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	90.1
d1jw9b_	247	Molybdenum cofactor biosynthesis protein MoeB {Esc	89.84
d5mdha1	154	Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982	89.8
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	89.78
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	89.68
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	89.67
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.47
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	89.4
d1qyda_	312	Pinoresinol-lariciresinol reductase {Giant arborvi	89.38
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	89.3
d1qsga_	258	Enoyl-ACP reductase {Escherichia coli [TaxId: 562]	89.18
d2hjsa1	144	Usg-1 protein homolog PA3116 {Pseudomonas aerugino	89.16
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	89.15
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	89.14
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	88.77
d1vm6a3	128	Dihydrodipicolinate reductase {Thermotoga maritima	88.66
d2q46a1	252	Hypothetical protein At5g02240 (T7H20_290) {Thale	88.61
d1sbya1	254	Drosophila alcohol dehydrogenase {Fly (Drosophila	88.58
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	88.48
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	88.46
d1y7ta1	154	Malate dehydrogenase {Thermus thermophilus [TaxId:	88.43
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	88.38
d1mb4a1	147	Aspartate beta-semialdehyde dehydrogenase {Vibrio	88.34
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	88.09
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.08
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	88.0
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.98
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.97
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	87.71
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	87.68
d1xgka_	350	Negative transcriptional regulator NmrA {Aspergill	87.68
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	87.43
d2a4ka1	241	beta-keto acyl carrier protein reductase {Thermus	87.3
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	87.09
d2h1qa1	251	Hypothetical protein Dhaf_3308 {Desulfitobacterium	86.94
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	86.79
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	86.37
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	86.32
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	86.23
d1d7oa_	297	Enoyl-ACP reductase {Oil seed rape (Brassica napus	86.19
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	86.14
d1db3a_	357	GDP-mannose 4,6-dehydratase {Escherichia coli [Tax	86.05
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	85.89
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	85.88
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	85.83
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	85.8
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	85.8
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	85.68
d1qyca_	307	Phenylcoumaran benzylic ether reductase {Loblolly	85.36
d1o5ia_	234	beta-keto acyl carrier protein reductase {Thermoto	84.95
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	84.89
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	84.39
d1vl0a_	281	DTDP-4-dehydrorhamnose reductase RfbD {Clostridium	84.09
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	83.9
d1pjca2	193	L-alanine dehydrogenase {Phormidium lapideum [TaxI	83.73
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	83.56
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	83.49
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	83.46
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	83.07
d2bkaa1	232	TAT-interacting protein TIP30 {Human (Homo sapiens	82.79
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	82.65
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	82.62
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	82.24
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	81.91
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	81.71
d1ebfa1	168	Homoserine dehydrogenase {Baker's yeast (Saccharom	81.34
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	81.22
d1rkxa_	356	CDP-glucose-4,6-dehydratase {Yersinia pseudotuberc	81.07
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	81.05
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	81.02
d1dhra_	236	Dihydropteridin reductase (pteridine reductase) {R	81.0
d1trba2	126	Thioredoxin reductase {Escherichia coli [TaxId: 56	80.33
d1pj3a1	294	Mitochondrial NAD(P)-dependent malic enzyme {Human	80.17
d1gz6a_	302	(3R)-hydroxyacyl-CoA dehydrogenase domain of estra	80.12

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=100.00  E-value=4e-50  Score=352.80  Aligned_cols=181  Identities=31%  Similarity=0.477  Sum_probs=164.6

Q ss_pred             chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       120 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      +.+|||++++++|++.|+++++++.+++|.|.+|.+....+.++.|+++||||+|+||+.+|+++ ++|||+|.+||++.
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   80 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRA-QGFDMDIDYFDTHR   80 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHH-Hhhccccccccccc
Confidence            46899999999999999999999999999999998877788999999999999999999999996 89999999999976


Q ss_pred             hhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCH
Q 019387          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      ........              .......+|++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++|||
T Consensus        81 ~~~~~~~~--------------~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde  146 (191)
T d1gdha1          81 ASSSDEAS--------------YQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDN  146 (191)
T ss_dssp             CCHHHHHH--------------HTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCH
T ss_pred             cccchhhc--------------ccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhh
Confidence            54322211              0112357899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCceEEEEecCCCCC---------CCcccccccccc
Q 019387          280 VALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHISTQ  315 (342)
Q Consensus       280 ~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia~~  315 (342)
                      +||++||++|+|.+|+||||++||         ||+++|||||++
T Consensus       147 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~l~~~~nvi~TPHiasa  191 (191)
T d1gdha1         147 ELVVAALEAGRLAYAGFDVFAGEPNINEGYYDLPNTFLFPHIGSA  191 (191)
T ss_dssp             HHHHHHHHHTSEEEEEESCCTTTTSCCTTGGGCTTEEECSSCTTC
T ss_pred             HHHHHHHHcCCceEEEEECCCCCCCCCchHHcCCCEEECCccccC
Confidence            999999999999999999999999         799999999874

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=2.9e-49  Score=345.64  Aligned_cols=175  Identities=34%  Similarity=0.466  Sum_probs=158.3

Q ss_pred             CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~  198 (342)
                      |+++||||+++++|++.|+++.+++.++++.|..   ....+.++.||++||+|+|+||+.+|+++ ++|||+|++||++
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~---~~~~~~~l~~k~vgiiG~G~IG~~va~~~-~~fg~~v~~~d~~   76 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKR---SSFSGTEIFGKTVGVVGLGRIGQLVAQRI-AAFGAYVVAYDPY   76 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCG---GGCCBCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEECTT
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCc---cccccccccceeeeeccccchhHHHHHHh-hhccceEEeecCC
Confidence            6789999999999999999999999999998753   33467899999999999999999999996 8999999999998


Q ss_pred             chhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd  278 (342)
                      .........                .....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||
T Consensus        77 ~~~~~~~~~----------------~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVd  140 (184)
T d1ygya1          77 VSPARAAQL----------------GIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVD  140 (184)
T ss_dssp             SCHHHHHHH----------------TCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBC
T ss_pred             CChhHHhhc----------------CceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhh
Confidence            754322210                0134699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCceEEEEecCCCCC---------CCcccccccc
Q 019387          279 EVALVEHLKQNPMFRVGLDVFEVTE---------LGFSSFKHIS  313 (342)
Q Consensus       279 ~~aL~~aL~~g~i~~aaLDV~~~EP---------~~~~~tPhia  313 (342)
                      ++||++||++|+|++|+||||++||         ||+++||||+
T Consensus       141 e~aL~~aL~~~~i~~a~lDV~~~EP~~~~~l~~~~nviiTPHIG  184 (184)
T d1ygya1         141 EAALADAITGGHVRAAGLDVFATEPCTDSPLFELAQVVVTPHLG  184 (184)
T ss_dssp             HHHHHHHHHTSSEEEEEESSCSSSSCSCCGGGGCTTEEECSSCS
T ss_pred             hHHHHHHHhcCcEeEEEEeCCCCCCCCCchHhcCCCEEECCCCC
Confidence            9999999999999999999999999         7999999985

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=100.00  E-value=8.3e-49  Score=344.78  Aligned_cols=178  Identities=30%  Similarity=0.431  Sum_probs=158.8

Q ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCC----CcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEc
Q 019387          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLP----NLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD  196 (342)
Q Consensus       121 ~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~----~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d  196 (342)
                      ++|||++++++|++.|+++.+++.+++|.|.++..    ....+.+|+||||||||+|+||+.+|+++ ++|||+|++||
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l-~~fg~~v~~~d   79 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRA-KAFGFNVLFYD   79 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEC
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeee-eccccceeecc
Confidence            58999999999999999999999999999875421    12457899999999999999999999996 89999999999


Q ss_pred             CCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          197 LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      ++........               .++....+|++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++
T Consensus        80 ~~~~~~~~~~---------------~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~i  144 (193)
T d1mx3a1          80 PYLSDGVERA---------------LGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGL  144 (193)
T ss_dssp             TTSCTTHHHH---------------HTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTS
T ss_pred             Ccccccchhh---------------hccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceE
Confidence            9875432211               1223457999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHcCCceEEEEecCCCCC-----------CCccccccccc
Q 019387          277 IDEVALVEHLKQNPMFRVGLDVFEVTE-----------LGFSSFKHIST  314 (342)
Q Consensus       277 vd~~aL~~aL~~g~i~~aaLDV~~~EP-----------~~~~~tPhia~  314 (342)
                      ||++||+++|++|++.+|+||||++||           ||+++|||+|+
T Consensus       145 vde~aL~~aL~~~~i~~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~  193 (193)
T d1mx3a1         145 VDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW  193 (193)
T ss_dssp             BCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred             EcHHHHHHHHHcCCceEEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence            999999999999999999999999999           68999999985

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=100.00  E-value=8.7e-49  Score=346.57  Aligned_cols=175  Identities=30%  Similarity=0.432  Sum_probs=158.1

Q ss_pred             chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       120 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      .++||||+++++|++.|++..+++.+++|.|..+.  .+.|++|.||||||||+|+||+.+|+++ ++|||+|++||+++
T Consensus         2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~--~~~~~~l~~ktvgIiG~G~IG~~va~~l-~~fg~~v~~~d~~~   78 (199)
T d1dxya1           2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAG--TFIGKELGQQTVGVMGTGHIGQVAIKLF-KGFGAKVIAYDPYP   78 (199)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHT--CCCCCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCccc--Ccccccccceeeeeeecccccccccccc-cccceeeeccCCcc
Confidence            47899999999999999999999999999986432  2457899999999999999999999997 89999999999986


Q ss_pred             hhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCH
Q 019387          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      ....               .   ......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||+
T Consensus        79 ~~~~---------------~---~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde  140 (199)
T d1dxya1          79 MKGD---------------H---PDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDT  140 (199)
T ss_dssp             CSSC---------------C---TTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCH
T ss_pred             chhh---------------h---cchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhh
Confidence            5310               0   011346899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCceEEEEecCCCCC-----------------------CCcccccccccc
Q 019387          280 VALVEHLKQNPMFRVGLDVFEVTE-----------------------LGFSSFKHISTQ  315 (342)
Q Consensus       280 ~aL~~aL~~g~i~~aaLDV~~~EP-----------------------~~~~~tPhia~~  315 (342)
                      +||++||++|+|.||+||||++||                       ||+++|||+|+|
T Consensus       141 ~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy  199 (199)
T d1dxya1         141 QAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY  199 (199)
T ss_dssp             HHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred             HHHHHHHhcCCcceEeccccCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence            999999999999999999999998                       689999999986

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=100.00  E-value=1.7e-47  Score=337.26  Aligned_cols=173  Identities=33%  Similarity=0.529  Sum_probs=157.0

Q ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       121 ~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      ++||||+++++|+++|+++.+++.+++|.|. |.+  ..|++|+||||||||+|+||+.+|+++ ++|||+|++||++..
T Consensus         2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~-w~~--~~g~el~gk~vgIiG~G~IG~~va~~l-~~fg~~V~~~d~~~~   77 (197)
T d1j4aa1           2 NAIAEHAAIQAARILRQDKAMDEKVARHDLR-WAP--TIGREVRDQVVGVVGTGHIGQVFMQIM-EGFGAKVITYDIFRN   77 (197)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCC-CTT--CCBCCGGGSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCC
T ss_pred             CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCC-cCC--CcCccccCCeEEEecccccchhHHHhH-hhhcccccccCcccc
Confidence            6899999999999999999999999999885 654  457899999999999999999999997 899999999999875


Q ss_pred             hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 019387          201 TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~  280 (342)
                      ...+.           .      .....++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||++
T Consensus        78 ~~~~~-----------~------~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~  140 (197)
T d1j4aa1          78 PELEK-----------K------GYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTD  140 (197)
T ss_dssp             HHHHH-----------T------TCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHH
T ss_pred             ccccc-----------c------eeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhH
Confidence            43211           0      113468999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCceEEEEecCCCCC-----------------------CCccccccccc
Q 019387          281 ALVEHLKQNPMFRVGLDVFEVTE-----------------------LGFSSFKHIST  314 (342)
Q Consensus       281 aL~~aL~~g~i~~aaLDV~~~EP-----------------------~~~~~tPhia~  314 (342)
                      ||+++|++|++.+|+||||++||                       ||+++|||+|+
T Consensus       141 aL~~aL~~~~i~~a~lDV~~~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~  197 (197)
T d1j4aa1         141 AVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF  197 (197)
T ss_dssp             HHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred             HHHHHHhcccchheeeeccccCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence            99999999999999999999995                       68999999984

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.4e-47  Score=336.04  Aligned_cols=174  Identities=25%  Similarity=0.359  Sum_probs=151.2

Q ss_pred             CchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387          119 LTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       119 ~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~  198 (342)
                      |+++||||+++++|++.|+++.+++.+++|.|.++.   ..+.+|.|++|||+|+|+||+.+|+++ ++|||+|++||++
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~---~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~   76 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLA---AGSFEARGKKLGIIGYGHIGTQLGILA-ESLGMYVYFYDIE   76 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC--------CCCSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSS
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccc---cccccccceEEEEeecccchhhhhhhc-ccccceEeecccc
Confidence            689999999999999999999999999999886543   356789999999999999999999996 8999999999987


Q ss_pred             chhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387          199 QATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd  278 (342)
                      ....                  ........++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||
T Consensus        77 ~~~~------------------~~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvd  138 (188)
T d1sc6a1          77 NKLP------------------LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVD  138 (188)
T ss_dssp             CCCC------------------CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBC
T ss_pred             ccch------------------hhhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhh
Confidence            5421                  0112244689999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCceEEEEecCCCCC--------------CCccccccccc
Q 019387          279 EVALVEHLKQNPMFRVGLDVFEVTE--------------LGFSSFKHIST  314 (342)
Q Consensus       279 ~~aL~~aL~~g~i~~aaLDV~~~EP--------------~~~~~tPhia~  314 (342)
                      ++||+++|++|++.+|+||||++||              ||+++|||+||
T Consensus       139 e~aL~~aL~~~~~~~a~lDV~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d1sc6a1         139 IPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGG  188 (188)
T ss_dssp             HHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSC
T ss_pred             hHHHHHHHHcCCceEEEEecCCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence            9999999999999999999999998              68999999986

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=100.00  E-value=1.8e-47  Score=335.37  Aligned_cols=177  Identities=25%  Similarity=0.290  Sum_probs=157.7

Q ss_pred             hHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          122 TTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       122 ~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      +||||+++++|++.|++..+++.+++|.|..+. ....+++|.|+++||+|+|+||+.+|+++ ++|||+|.+||++...
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~-~~~~~~~l~~~~vgiiG~G~IG~~va~~l-~~fg~~v~~~d~~~~~   79 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIAD-CVSHAYDLEAMHVGTVAAGRIGLAVLRRL-APFDVHLHYTDRHRLP   79 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHH-HHTTCCCCTTCEEEEECCSHHHHHHHHHH-GGGTCEEEEECSSCCC
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcc-cCCcceeccccceeeccccccchhhhhhh-hccCceEEEEeecccc
Confidence            799999999999999999999999999986432 22346789999999999999999999996 8999999999987643


Q ss_pred             HHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHH
Q 019387          202 RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVA  281 (342)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~a  281 (342)
                      ......              ..+....++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++|
T Consensus        80 ~~~~~~--------------~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~a  145 (188)
T d2naca1          80 ESVEKE--------------LNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDA  145 (188)
T ss_dssp             HHHHHH--------------HTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHH
T ss_pred             cccccc--------------ccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHH
Confidence            221111              112345799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCceEEEEecCCCCC----------CCccccccccc
Q 019387          282 LVEHLKQNPMFRVGLDVFEVTE----------LGFSSFKHIST  314 (342)
Q Consensus       282 L~~aL~~g~i~~aaLDV~~~EP----------~~~~~tPhia~  314 (342)
                      |+++|++|++.+|+||||++||          ||+++||||||
T Consensus       146 L~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nv~~TPHiaG  188 (188)
T d2naca1         146 VARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG  188 (188)
T ss_dssp             HHHHHHTTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred             HHHHHhCCCceeEEEeCCCCCCCCCCChHHcCCCeEEccccCc
Confidence            9999999999999999999999          89999999986

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=100.00  E-value=1.1e-46  Score=327.98  Aligned_cols=170  Identities=27%  Similarity=0.412  Sum_probs=154.1

Q ss_pred             chhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          120 TETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       120 ~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      +++||||+++++|++.|++..+++.+++|.|.+..    ...+|.||+|||||+|+||+.+|+++ ++|||+|++||+++
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~----~~~~l~gk~vgIiG~G~IG~~va~~l-~~~g~~v~~~d~~~   75 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDV----EIPLIQGEKVAVLGLGEIGTRVGKIL-AALGAQVRGFSRTP   75 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCS----CCCCCTTCEEEEESCSTHHHHHHHHH-HHTTCEEEEECSSC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCC----CCCcccCceEEEeccccccccceeee-eccccccccccccc
Confidence            57999999999999999999999999999886432    22469999999999999999999996 89999999999986


Q ss_pred             hhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCH
Q 019387          200 ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      ...                    ......++++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||+
T Consensus        76 ~~~--------------------~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~  135 (181)
T d1qp8a1          76 KEG--------------------PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDR  135 (181)
T ss_dssp             CCS--------------------SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCH
T ss_pred             ccc--------------------ceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccc
Confidence            421                    111346899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCceEEEEecCCCCC-----------CCccccccccc
Q 019387          280 VALVEHLKQNPMFRVGLDVFEVTE-----------LGFSSFKHIST  314 (342)
Q Consensus       280 ~aL~~aL~~g~i~~aaLDV~~~EP-----------~~~~~tPhia~  314 (342)
                      +||+++|++|++.+|++|||+.||           ||+++|||+||
T Consensus       136 ~aL~~aL~~~~i~~aalDV~~~e~p~~~~~~l~~~~nvi~TPHiaG  181 (181)
T d1qp8a1         136 DGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAG  181 (181)
T ss_dssp             HHHHHHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred             hhhhhhcccCcEEEEEEecCCCCCCCCCCChHHcCCCEEeccccCc
Confidence            999999999999999999998775           89999999986

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.91  E-value=2.6e-25  Score=182.36  Aligned_cols=129  Identities=22%  Similarity=0.273  Sum_probs=114.3

Q ss_pred             CceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEc
Q 019387           14 GKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        14 ~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~   93 (342)
                      +|+|||++.+++++. ++.|++. +++.+..    ..+++|+.+.+++ +|+++++..+++++++++++|+|  |+|++.
T Consensus         1 sMpkvli~~~~~~~~-~~~L~~~-~~v~~~~----~~~~~el~~~~~~-~d~ii~~~~~~i~~~~l~~~p~L--k~I~~~   71 (130)
T d1ygya2           1 SLPVVLIADKLAPST-VAALGDQ-VEVRWVD----GPDRDKLLAAVPE-ADALLVRSATTVDAEVLAAAPKL--KIVARA   71 (130)
T ss_dssp             CCCEEEECSSCCGGG-GTTSCSS-SEEEECC----TTSHHHHHHHGGG-CSEEEECSSSCBCHHHHHTCTTC--CEEEES
T ss_pred             CCCEEEEECCCCHHH-HHHHhCC-cEEEECC----CCCHHHHHHHcCC-CEEEEEcCcccchHHHHhhcccc--eEEeee
Confidence            588999999998854 6777665 5887643    2478999999985 99999887788999999999987  999999


Q ss_pred             cccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCC
Q 019387           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD  151 (342)
Q Consensus        94 ~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~  151 (342)
                      |+|+||||+++|+++||.|+|+|++++.+|||++++++|++.|++..+++++|+|.|.
T Consensus        72 g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~  129 (130)
T d1ygya2          72 GVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNV  129 (130)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred             cccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence            9999999999999999999999999999999999999999999999888888887653

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.87  E-value=2e-22  Score=165.24  Aligned_cols=119  Identities=21%  Similarity=0.148  Sum_probs=101.1

Q ss_pred             CCceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEE
Q 019387           13 NGKYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSN   92 (342)
Q Consensus        13 ~~~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~   92 (342)
                      +++||||+++++++. .++.|++.|+.+...  .....+++++.+.+.+ +|++++....++++++++++|+|  |+|++
T Consensus         2 k~kmKILv~d~i~~~-a~~~L~~~g~~~v~~--~~~~~~~~~l~~~~~~-~d~ii~~~~~~i~~~~i~~~p~L--k~I~~   75 (132)
T d1sc6a2           2 KDKIKFLLVEGVHQK-ALESLRAAGYTNIEF--HKGALDDEQLKESIRD-AHFIGLRSRTHLTEDVINAAEKL--VAIGA   75 (132)
T ss_dssp             CSSCCEEECSCCCHH-HHHHHHHTTCCCEEE--CSSCCCHHHHHHHTTS-CSEEEECSSCCBCHHHHHHCSSC--CEEEE
T ss_pred             CCCCEEEEECCCCHH-HHHHHHhCCCEEEEe--CCCCCCHHHHHHhhcC-CcEEEEecccccChhhhhccccc--eeEEE
Confidence            578999999999885 489999988654333  2335689999999985 99999887788999999999988  99999


Q ss_pred             ccccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhc
Q 019387           93 MAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARR  137 (342)
Q Consensus        93 ~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~  137 (342)
                      .|+|+||||+++|+++||.|+|+|++++.+|||+++.++++..|+
T Consensus        76 ~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~~~~~~  120 (132)
T d1sc6a2          76 FAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIK  120 (132)
T ss_dssp             CSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHHHHHHH
T ss_pred             ecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHHHHhhH
Confidence            999999999999999999999999999999999876655544443

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.85  E-value=6.7e-21  Score=155.52  Aligned_cols=116  Identities=20%  Similarity=0.352  Sum_probs=99.1

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhh-ccCCceEEEc
Q 019387           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALS-RAGGKAFSNM   93 (342)
Q Consensus        15 ~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~-~l~~k~i~~~   93 (342)
                      |+|||++.+++++ .++.|++. +++.. ...+...+.+|+.+.+++ +|++++....++++++++++| ++  |+|++.
T Consensus         1 K~kVlit~~~~~~-~~~~l~~~-~~v~~-~~~~~~~s~~el~~~~~~-~d~ii~~~~~~i~~~~l~~~~~~L--K~I~~~   74 (129)
T d1gdha2           1 KKKILITWPLPEA-AMARARES-YDVIA-HGDDPKITIDEMIETAKS-VDALLITLNEKCRKEVIDRIPENI--KCISTY   74 (129)
T ss_dssp             CCEEEESSCCCHH-HHHHHHTT-SEEEE-CCSTTCCCHHHHHHHHTT-CSEEEEETTSCBCHHHHHHSCTTC--CEEEEE
T ss_pred             CCEEEEeCCCCHH-HHHHHHcC-CcEEE-eCCCCCCCHHHHHHHhcC-CCEEEEcCCchhhhHHHhhhhhcc--eeeeec
Confidence            5799999999875 47888764 58764 334557899999999985 999998878899999999997 46  999999


Q ss_pred             cccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHh
Q 019387           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAAR  136 (342)
Q Consensus        94 ~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R  136 (342)
                      |+|+||||+++|+++||+|+|+||+++++|||+++++|+.+.+
T Consensus        75 gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~  117 (129)
T d1gdha2          75 SIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDA  117 (129)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999987765555554

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.85  E-value=6.8e-22  Score=161.95  Aligned_cols=121  Identities=16%  Similarity=0.243  Sum_probs=97.1

Q ss_pred             eEEEEeCCCCc-hHHHHHH-HhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEc
Q 019387           16 YRVVSTKPMPG-TRWINLL-IEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNM   93 (342)
Q Consensus        16 ~~vl~~~~~~~-~~~~~~l-~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~   93 (342)
                      |||++....+. ...++.+ ++.++++.....   . ..++..+.+. ++|+|++....++++++++++|..++|+|++.
T Consensus         1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~---~-~~~~~~~~~~-~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~   75 (131)
T d1dxya2           1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTE---F-LDENTVEWAK-GFDGINSLQTTPYAAGVFEKMHAYGIKFLTIR   75 (131)
T ss_dssp             CEEEECSCCTTTHHHHHHHHHHHCCEEEECSS---C-CCTTGGGGGT-TCSEEEECCSSCBCHHHHHHHHHTTCCEEEES
T ss_pred             CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCC---C-CCHHHHHHhc-CCCEEEEecCCCCCHHHHhhcccCCeEEEEEc
Confidence            67888643333 2334444 456777765432   1 2356666666 49999988888999999999987777999999


Q ss_pred             cccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHH
Q 019387           94 AVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEA  141 (342)
Q Consensus        94 ~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~  141 (342)
                      |+|+||||+++|+++||+|+|+|++++++|||++++++|++.|++.++
T Consensus        76 ~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~  123 (131)
T d1dxya2          76 NVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKG  123 (131)
T ss_dssp             SSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHH
Confidence            999999999999999999999999999999999999999999998754

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.83  E-value=8.3e-23  Score=165.05  Aligned_cols=121  Identities=11%  Similarity=0.104  Sum_probs=101.0

Q ss_pred             eEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 019387           16 YRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        16 ~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~   95 (342)
                      |||+++.+++++ ..+.|++. +++..  ..+           +. ++|+++++   +++++.++++|+|  |+|++.|+
T Consensus         1 Mki~v~~~lp~e-~~e~L~~~-~~v~~--~~d-----------~~-~~d~~l~~---~~~~~~l~~~~~L--k~i~~~~a   59 (121)
T d1qp8a2           1 MELYVNFELPPE-AEEELRKY-FKIVR--GGD-----------LG-NVEAALVS---RITAEELAKMPRL--KFIQVVTA   59 (121)
T ss_dssp             CEEECCSCCCHH-HHHHHHTT-CEEEC--SSC-----------CT-TBCCCCBS---CCCHHHHHHCTTC--CCEEBSSS
T ss_pred             CEEEEeCCCCHH-HHHHhhhc-ceEee--ccc-----------cc-ccceeeee---ccCHHHHhcCCCc--eEEEeccc
Confidence            789999999975 46777664 45542  111           12 47877765   6889999999998  99999999


Q ss_pred             cCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCH
Q 019387           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGR  175 (342)
Q Consensus        96 G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~  175 (342)
                      |+||+|++.++ +||.|+|++|.|+.+||||+++++|++.|+                              ++|+|+|+
T Consensus        60 G~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~------------------------------l~i~G~G~  108 (121)
T d1qp8a2          60 GLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN------------------------------LITYATGG  108 (121)
T ss_dssp             CCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH------------------------------HHHHHTTS
T ss_pred             CcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC------------------------------EEEEcCCH
Confidence            99999999885 699999999999999999999999999873                              57999999


Q ss_pred             HHHHHHHHHHhcCC
Q 019387          176 IGSAYARMMVEGFK  189 (342)
Q Consensus       176 IG~~vA~~l~~afg  189 (342)
                      ||+++|+++ ++||
T Consensus       109 iG~~iA~r~-~a~G  121 (121)
T d1qp8a2         109 RPRNIAKRE-DYIG  121 (121)
T ss_dssp             CCSCBCCGG-GTC-
T ss_pred             HHHHHHHHH-HhcC
Confidence            999999995 8997

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.78  E-value=5.5e-20  Score=156.36  Aligned_cols=116  Identities=16%  Similarity=0.087  Sum_probs=100.7

Q ss_pred             HHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecC--CCCccHHHHHHhhccCCceEEEccccCCccChhHHHh
Q 019387           30 INLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQL--TEDWGETLFAALSRAGGKAFSNMAVGYNNVDVNAANK  107 (342)
Q Consensus        30 ~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~--~~~~~~e~l~~l~~l~~k~i~~~~~G~d~id~~~~~~  107 (342)
                      -+.|++.|+++......  ..+.+++.+.+.+ +|++++++  ...+++|.++++|+|  |+|++.|+|+||||+++|++
T Consensus        60 r~~Le~~GhelV~~sd~--~~~~~el~k~l~D-ADivI~~pf~~~~lt~e~i~~ap~L--KlI~~~g~G~D~VDl~aa~e  134 (186)
T d2naca2          60 RKYLESNGHTLVVTSDK--DGPDSVFERELVD-ADVVISQPFWPAYLTPERIAKAKNL--KLALTAGIGSDHVDLQSAID  134 (186)
T ss_dssp             HHHHHHTTCEEEEESCC--SSTTSHHHHHHTT-CSEEEEBTTBCCCBCHHHHHHCTTC--CEEEESSSCCTTBCHHHHHH
T ss_pred             HHHHHHCCCEEEEecCC--CCChHHHHhhccc-CCEEEEecccccccCHHHHhcCccc--eEEEEeccCCccccHHHHHh
Confidence            46789999999876443  3466788888886 99999974  467999999999998  99999999999999999999


Q ss_pred             CCeeEecCCCCCchhHHHHH--------HHHHHHHHhchHHHHHHHHcCCC
Q 019387          108 YGIAVGNTPGVLTETTAELA--------ASLSLAAARRIVEADEFMRAGLY  150 (342)
Q Consensus       108 ~gI~V~n~~~~~~~~vAE~~--------l~~~L~~~R~~~~~~~~~~~g~w  150 (342)
                      +||.|+|+|++|+.+||||+        +.++++..|++...+..+++|+|
T Consensus       135 ~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         135 RNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             TTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             CCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            99999999999999999999        77888888988877777777765

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.77  E-value=4.8e-19  Score=145.32  Aligned_cols=125  Identities=20%  Similarity=0.214  Sum_probs=95.7

Q ss_pred             EEEEeCCCCc-hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEccc
Q 019387           17 RVVSTKPMPG-TRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMAV   95 (342)
Q Consensus        17 ~vl~~~~~~~-~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~~   95 (342)
                      ||++....+. ..+++.+.+..+++++..... ..+ +|+.+.+.+ +|+|++....+++++++++++.+++|+|++.|+
T Consensus         2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~-~~~-~e~~~~~~~-~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~v   78 (134)
T d1j4aa2           2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDK-LLT-PETVALAKG-ADGVVVYQQLDYIAETLQALADNGITKMSLRNV   78 (134)
T ss_dssp             EEEECSCCGGGHHHHHHHHHTCTTSEEEECSS-CCC-TTTGGGGTT-CSEEEECCSSCBCHHHHHHHHHTTCCEEEESSS
T ss_pred             eEEEEecccccHHHHHHHHHhCCCEEEEECCC-CCC-HHHHHHhcC-CCEEEEecCCCcCHHHHhhhcccCeeEEEEccC
Confidence            6666543333 335666666555665543332 334 566666664 999999888899999999998877899999999


Q ss_pred             cCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCC
Q 019387           96 GYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLY  150 (342)
Q Consensus        96 G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w  150 (342)
                      |+||||+++|+++||.|+|+|++   ++||+++++||++.|++.   ..+.+|.|
T Consensus        79 G~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~---~~~~~~k~  127 (134)
T d1j4aa2          79 GVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNN---LELVEGKE  127 (134)
T ss_dssp             CCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHH---HHHHTTCC
T ss_pred             CcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHh---HHHhhhhc
Confidence            99999999999999999999987   579999999999999874   34445544

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.76  E-value=4e-19  Score=145.18  Aligned_cols=125  Identities=20%  Similarity=0.236  Sum_probs=97.6

Q ss_pred             ceEEEEeCCCCchHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhCCCceEEEecCCCCccHHHHHHhhccCCceEEEcc
Q 019387           15 KYRVVSTKPMPGTRWINLLIEQDCRVEICTQKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFAALSRAGGKAFSNMA   94 (342)
Q Consensus        15 ~~~vl~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~~~~d~vi~~~~~~~~~e~l~~l~~l~~k~i~~~~   94 (342)
                      +++|++.+..+....+..|++. .++.++..    .+.+|+.+.+.+++++++++...++++++++++|+|  |+|++.|
T Consensus         1 mP~v~~ld~~d~~~e~~~L~~~-~~v~~~~~----~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~~~L--k~I~~~g   73 (133)
T d1mx3a2           1 MPLVALLDGRDCTVEMPILKDV-ATVAFCDA----QSTQEIHEKVLNEAVGALMYHTITLTREDLEKFKAL--RIIVRIG   73 (133)
T ss_dssp             CCEEEESSCSCCTTTHHHHTTT-CEEEECCC----SSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTCSSC--CEEEESS
T ss_pred             CCEEEEecCCcchhhHHHhccc-ceEEEecC----CChHHHHHHHhccCcEEEEEeCCCcCHHHHhhCCCC--eEEEEcC
Confidence            3566666655544446677664 47765432    244555444333478888887789999999999987  9999999


Q ss_pred             ccCCccChhHHHhCCeeEecCCCCCchhHHHHHHHHHHHHHhchHHHHHHHHcCCCC
Q 019387           95 VGYNNVDVNAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYD  151 (342)
Q Consensus        95 ~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~  151 (342)
                      +|+||||+++|+++||.|+|+|++++ ++|||+++++|++.|+++++.    +|.|+
T Consensus        74 ~G~d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~----~g~~~  125 (133)
T d1mx3a2          74 SGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAI----TGRIP  125 (133)
T ss_dssp             SCCTTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHH----HSCTT
T ss_pred             CCcccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHH----hcccc
Confidence            99999999999999999999999987 579999999999999998764    56664

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.2e-18  Score=140.80  Aligned_cols=121  Identities=21%  Similarity=0.345  Sum_probs=99.2

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      +..|.||+++|+|||.||+.+|+++ ++|||+|++||+.|...+++..+.|               ...++++++..+|+
T Consensus        19 ~~~l~Gk~v~V~GyG~iG~g~A~~~-rg~G~~V~v~e~dp~~al~A~~dG~---------------~v~~~~~a~~~adi   82 (163)
T d1li4a1          19 DVMIAGKVAVVAGYGDVGKGCAQAL-RGFGARVIITEIDPINALQAAMEGY---------------EVTTMDEACQEGNI   82 (163)
T ss_dssp             CCCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHHHHTTC---------------EECCHHHHTTTCSE
T ss_pred             CceecCCEEEEeccccccHHHHHHH-HhCCCeeEeeecccchhHHhhcCce---------------EeeehhhhhhhccE
Confidence            3579999999999999999999997 8999999999999977777655443               34689999999999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCCceEEEEecCC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINva-RG~~vd~~aL~~aL~~g~i~~aaLDV~~  300 (342)
                      |+++.    .++++|+.+.|++||+|+++.|++ +..-||.++|.+...+.+.....+|.|+
T Consensus        83 vvtaT----Gn~~vI~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~  140 (163)
T d1li4a1          83 FVTTT----GCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR  140 (163)
T ss_dssp             EEECS----SCSCSBCHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred             EEecC----CCccchhHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence            98875    478999999999999999999987 6777999999875444333334445433

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=99.51  E-value=4.5e-14  Score=117.50  Aligned_cols=104  Identities=20%  Similarity=0.320  Sum_probs=89.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..+.||++.|+|||.+|+.+|+++ +++|++|++++..|-..+++..+.|               ...+++++++.+|++
T Consensus        19 ~~laGk~vvV~GYG~vGrG~A~~~-rg~Ga~V~V~E~DPi~alqA~mdGf---------------~v~~~~~a~~~aDi~   82 (163)
T d1v8ba1          19 FLISGKIVVICGYGDVGKGCASSM-KGLGARVYITEIDPICAIQAVMEGF---------------NVVTLDEIVDKGDFF   82 (163)
T ss_dssp             CCCTTSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSCHHHHHHHHTTTC---------------EECCHHHHTTTCSEE
T ss_pred             ceecCCEEEEecccccchhHHHHH-HhCCCEEEEEecCchhhHHHHhcCC---------------ccCchhHccccCcEE
Confidence            468999999999999999999996 8999999999999877777655543               347999999999999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-cCHHHHHH
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-IDEVALVE  284 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-vd~~aL~~  284 (342)
                      +.+..    ++++|+.++|..||+|+++-|++..+. ||-++|.+
T Consensus        83 vTaTG----n~~vI~~~h~~~MKdgaIl~N~GHfd~EIdv~~L~~  123 (163)
T d1v8ba1          83 ITCTG----NVDVIKLEHLLKMKNNAVVGNIGHFDDEIQVNELFN  123 (163)
T ss_dssp             EECCS----SSSSBCHHHHTTCCTTCEEEECSSTTTSBCHHHHHT
T ss_pred             EEcCC----CCccccHHHHHHhhCCeEEEeccccchhhhhHHHHh
Confidence            99876    467999999999999999999998875 56666654

>d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.34  E-value=9.6e-13  Score=110.18  Aligned_cols=112  Identities=16%  Similarity=0.185  Sum_probs=91.4

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|||||+|+||+.+|++|+ .-|.+|++||++++.. +.+.+             .+.....+.++++++||+|++|+|.
T Consensus         2 kIgiIGlG~MG~~~A~~L~-~~G~~V~~~d~~~~~~-~~~~~-------------~~~~~~~~~~e~~~~~d~ii~~v~~   66 (161)
T d1vpda2           2 KVGFIGLGIMGKPMSKNLL-KAGYSLVVSDRNPEAI-ADVIA-------------AGAETASTAKAIAEQCDVIITMLPN   66 (161)
T ss_dssp             EEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHHH-HHHHH-------------TTCEECSSHHHHHHHCSEEEECCSS
T ss_pred             EEEEEehhHHHHHHHHHHH-HCCCeEEEEeCCcchh-HHHHH-------------hhhhhcccHHHHHhCCCeEEEEcCC
Confidence            6999999999999999984 6799999999987643 22221             1122457899999999999999998


Q ss_pred             CcccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceE
Q 019387          247 DKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       247 ~~~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~  293 (342)
                      .++.+.++.  ...+..+++|.++||++....-+...+.+.+++..+..
T Consensus        67 ~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~  115 (161)
T d1vpda2          67 SPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEM  115 (161)
T ss_dssp             HHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEE
T ss_pred             HHHHHHHHhCCcchhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCce
Confidence            888887763  45788999999999999999888889999998876654

>d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.24  E-value=9.1e-12  Score=104.23  Aligned_cols=112  Identities=18%  Similarity=0.228  Sum_probs=90.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      ++|||||+|.||.++|++|+ .-|.+|.+||++++.. +.+..             .+.....++.+++..+|+|++|+|
T Consensus         2 ~kIg~IGlG~MG~~iA~~L~-~~g~~v~~~d~~~~~~-~~~~~-------------~~~~~~~~~~e~~~~~diii~~v~   66 (162)
T d3cuma2           2 KQIAFIGLGHMGAPMATNLL-KAGYLLNVFDLVQSAV-DGLVA-------------AGASAARSARDAVQGADVVISMLP   66 (162)
T ss_dssp             CEEEEECCSTTHHHHHHHHH-HTTCEEEEECSSHHHH-HHHHH-------------TTCEECSSHHHHHTSCSEEEECCS
T ss_pred             CEEEEEEEHHHHHHHHHHHH-HCCCeEEEEECchhhh-hhhhh-------------hhccccchhhhhccccCeeeeccc
Confidence            58999999999999999985 5699999999987643 22211             112234688999999999999999


Q ss_pred             CCcccccccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          246 LDKTTYHLIN--KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       246 l~~~t~~li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ..+..+.++.  ...+..+++|.++||++....-+...+.+.+++..+.
T Consensus        67 ~~~~~~~v~~~~~~~~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi~  115 (162)
T d3cuma2          67 ASQHVEGLYLDDDGLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLA  115 (162)
T ss_dssp             CHHHHHHHHHSTTCHHHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred             chhhHHHHHhccccccccCCCCCEEEECCCCCHHHHHHHHHHHHHCCCc
Confidence            8877776653  4578889999999999999988889999999887664

>d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Sheep (Ovis orientalis aries) [TaxId: 9940]

Probab=99.11  E-value=1e-10  Score=99.00  Aligned_cols=122  Identities=13%  Similarity=0.182  Sum_probs=90.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .++|||||+|+||..+|++|+ .-|.+|++||++++.. +.+.+...     +.....+.....++.+.+..+|++++++
T Consensus         2 ~~nIg~IGlG~MG~~mA~~L~-~~G~~V~v~dr~~~~~-~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~ii~~~   74 (176)
T d2pgda2           2 QADIALIGLAVMGQNLILNMN-DHGFVVCAFNRTVSKV-DDFLANEA-----KGTKVLGAHSLEEMVSKLKKPRRIILLV   74 (176)
T ss_dssp             CBSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSTHHH-HHHHHTTT-----TTSSCEECSSHHHHHHHBCSSCEEEECS
T ss_pred             CCcEEEEeEhHHHHHHHHHHH-HCCCeEEEEcCCHHHH-HHHHHhcc-----ccccccchhhhhhhhhhhcccceEEEec
Confidence            368999999999999999985 5699999999988643 33222110     0111112223345667788899999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEE
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~a  294 (342)
                      |..+.....+ ...+..+++|.++||++....-+...+.+.+++..+...
T Consensus        75 ~~~~~v~~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~l  123 (176)
T d2pgda2          75 KAGQAVDNFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFV  123 (176)
T ss_dssp             CTTHHHHHHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEE
T ss_pred             CchHHHHHHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCCcee
Confidence            9887777655 467889999999999999999998999999987766533

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=98.96  E-value=4.5e-10  Score=93.55  Aligned_cols=106  Identities=19%  Similarity=0.167  Sum_probs=73.4

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|||||+|+||..+|+.| +..|.+|++||++++..... .+        .+...    ...+..+.+++||+|++++|.
T Consensus         2 kI~iIG~G~mG~~lA~~l-~~~g~~V~~~d~~~~~~~~a-~~--------~~~~~----~~~~~~~~~~~~DiIilavp~   67 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDL-RRRGHYLIGVSRQQSTCEKA-VE--------RQLVD----EAGQDLSLLQTAKIIFLCTPI   67 (165)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHHHHH-HH--------TTSCS----EEESCGGGGTTCSEEEECSCH
T ss_pred             EEEEEeecHHHHHHHHHH-HHCCCEEEEEECCchHHHHH-HH--------hhccc----eeeeecccccccccccccCcH
Confidence            799999999999999998 67899999999987543221 11        11111    112334577999999999995


Q ss_pred             CcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       247 ~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                       ..+..+++ +....+++++++++++........ ..+.+...
T Consensus        68 -~~~~~vl~-~l~~~l~~~~iv~~~~s~~~~~~~-~~~~~~~~  107 (165)
T d2f1ka2          68 -QLILPTLE-KLIPHLSPTAIVTDVASVKTAIAE-PASQLWSG  107 (165)
T ss_dssp             -HHHHHHHH-HHGGGSCTTCEEEECCSCCHHHHH-HHHHHSTT
T ss_pred             -hhhhhhhh-hhhhhcccccceeeccccchHHHH-HHHHhhcc
Confidence             46667664 567889999999999765533333 33444433

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.92  E-value=2.3e-09  Score=89.44  Aligned_cols=121  Identities=15%  Similarity=0.099  Sum_probs=82.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH-HhhcCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~aDiV~l  242 (342)
                      |+|+|||+|.||.++|+.| +..|  .+|++||++++......         ..+....   ...+.++ ....+|+|++
T Consensus         2 k~I~IIG~G~mG~sla~~L-~~~g~~~~I~~~D~~~~~~~~a~---------~~~~~~~---~~~~~~~~~~~~~dlIil   68 (171)
T d2g5ca2           2 QNVLIVGVGFMGGSFAKSL-RRSGFKGKIYGYDINPESISKAV---------DLGIIDE---GTTSIAKVEDFSPDFVML   68 (171)
T ss_dssp             CEEEEESCSHHHHHHHHHH-HHTTCCSEEEEECSCHHHHHHHH---------HTTSCSE---EESCGGGGGGTCCSEEEE
T ss_pred             CEEEEEccCHHHHHHHHHH-HhcCCCeEEEEEECChHHHHHHH---------Hhhcchh---hhhhhhhhhccccccccc
Confidence            5799999999999999998 4444  58999999876532221         1111111   1223333 3357999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEV  301 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~  301 (342)
                      |+|. ..+..++ .+....++++.++++++.....-.+++.+.+...-+.+--+...+.
T Consensus        69 a~p~-~~~~~vl-~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~  125 (171)
T d2g5ca2          69 SSPV-RTFREIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEK  125 (171)
T ss_dssp             CSCH-HHHHHHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSC
T ss_pred             cCCc-hhhhhhh-hhhhccccccccccccccccHHHHHHHHHhhccccccccccccccc
Confidence            9994 3455555 3456778999999999987666666777777766566666665543

>d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hydroxyisobutyrate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=98.84  E-value=2.9e-09  Score=87.94  Aligned_cols=115  Identities=18%  Similarity=0.205  Sum_probs=82.0

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|||||+|+||..+|++|. .-|..+ +|++..++..+ ..+..       +       ...+..+.+.++|++++++|.
T Consensus         2 kIg~IGlG~MG~~ma~~L~-~~g~~~-~~~~~~~~~~~-~~~~~-------~-------~~~~~~~~~~~~~~~i~~~~~   64 (156)
T d2cvza2           2 KVAFIGLGAMGYPMAGHLA-RRFPTL-VWNRTFEKALR-HQEEF-------G-------SEAVPLERVAEARVIFTCLPT   64 (156)
T ss_dssp             CEEEECCSTTHHHHHHHHH-TTSCEE-EECSSTHHHHH-HHHHH-------C-------CEECCGGGGGGCSEEEECCSS
T ss_pred             eEEEEeHHHHHHHHHHHHH-hCCCEE-EEeCCHHHHHH-HHHHc-------C-------CcccccccccceeEEEecccc
Confidence            6999999999999999985 446665 45555443322 11111       1       012334556789999999998


Q ss_pred             CcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecC
Q 019387          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVF  299 (342)
Q Consensus       247 ~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~  299 (342)
                      .++..... ...+..+++|.++||++....-....+.+.+++..+...---|.
T Consensus        65 ~~~v~~~~-~~l~~~~~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVs  116 (156)
T d2cvza2          65 TREVYEVA-EALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVS  116 (156)
T ss_dssp             HHHHHHHH-HHHTTTCCTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEE
T ss_pred             hhhhhhhh-ccccccccccccccccccCCHHHHHHHHHHHHHcCCeEEecccc
Confidence            76655443 56789999999999999999988899999999877654433333

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=98.84  E-value=8.8e-09  Score=85.70  Aligned_cols=103  Identities=17%  Similarity=0.342  Sum_probs=77.1

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .+...+|.|+|.|..|...++. |+++|++|.++|.+.+. .+.....+....      .........+++.+++||+|+
T Consensus        29 gv~pa~V~ViGaGvaG~~A~~~-A~~lGA~V~~~D~~~~~-l~~l~~~~~~~~------~~~~~~~~~l~~~~~~aDivI  100 (168)
T d1pjca1          29 GVKPGKVVILGGGVVGTEAAKM-AVGLGAQVQIFDINVER-LSYLETLFGSRV------ELLYSNSAEIETAVAEADLLI  100 (168)
T ss_dssp             TBCCCEEEEECCSHHHHHHHHH-HHHTTCEEEEEESCHHH-HHHHHHHHGGGS------EEEECCHHHHHHHHHTCSEEE
T ss_pred             CCCCcEEEEECCChHHHHHHHH-HhhCCCEEEEEeCcHHH-HHHHHHhhcccc------eeehhhhhhHHHhhccCcEEE
Confidence            3567799999999999999998 58999999999998754 333222222110      111122346889999999997


Q ss_pred             EcCC-CCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          242 LHPV-LDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       242 l~~p-l~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .++- -...+..+|.++.++.||||+++||++
T Consensus       101 ~aalipG~~aP~lIt~~mv~~Mk~GSVIVDva  132 (168)
T d1pjca1         101 GAVLVPGRRAPILVPASLVEQMRTGSVIVDVA  132 (168)
T ss_dssp             ECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred             EeeecCCcccCeeecHHHHhhcCCCcEEEEee
Confidence            6642 245678999999999999999999986

>d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Conserved hypothetical protein MTH1747
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.84  E-value=2.5e-09  Score=87.92  Aligned_cols=105  Identities=10%  Similarity=0.016  Sum_probs=74.0

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|||||+|+||+.+|+.|+ .-|.+|.+||+.++..........              ....+.++++.+||+|++|+|.
T Consensus         2 kIgiIG~G~mG~~ia~~l~-~~g~~v~~~~~~~~~~~~~~~~~~--------------~~~~~~~e~~~~~diIi~~v~~   66 (152)
T d1i36a2           2 RVGFIGFGEVAQTLASRLR-SRGVEVVTSLEGRSPSTIERARTV--------------GVTETSEEDVYSCPVVISAVTP   66 (152)
T ss_dssp             EEEEESCSHHHHHHHHHHH-HTTCEEEECCTTCCHHHHHHHHHH--------------TCEECCHHHHHTSSEEEECSCG
T ss_pred             EEEEEcHHHHHHHHHHHHH-HCCCeEEEEcCchhHHHHHhhhcc--------------cccccHHHHHhhcCeEEEEecC
Confidence            7999999999999999984 669999999987755433222111              1235788999999999999995


Q ss_pred             CcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       247 ~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      ... ...+ .+...  ..+..+|+++.........+.+.+++.+
T Consensus        67 ~~~-~~~~-~~~~~--~~~~~~id~st~~p~~~~~l~~~~~~~~  106 (152)
T d1i36a2          67 GVA-LGAA-RRAGR--HVRGIYVDINNISPETVRMASSLIEKGG  106 (152)
T ss_dssp             GGH-HHHH-HHHHT--TCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred             chH-HHHH-Hhhcc--cCCceeeccCcCCHHHHHHHHHHHhccC
Confidence            432 2222 11222  2367899998887777777887776543

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=98.77  E-value=8.7e-09  Score=84.41  Aligned_cols=84  Identities=13%  Similarity=0.179  Sum_probs=67.4

Q ss_pred             ccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ...-++|+||| +|.||+.+|+.| +.-|.+|.+||+....                           ..++.+..+|++
T Consensus         6 ~~~~~kI~iIGg~G~mG~~la~~L-~~~G~~V~~~d~~~~~---------------------------~~~~~~~~~~~v   57 (152)
T d2pv7a2           6 NSDIHKIVIVGGYGKLGGLFARYL-RASGYPISILDREDWA---------------------------VAESILANADVV   57 (152)
T ss_dssp             CTTCCCEEEETTTSHHHHHHHHHH-HTTTCCEEEECTTCGG---------------------------GHHHHHTTCSEE
T ss_pred             CCCCCeEEEEcCCCHHHHHHHHHH-HHcCCCcEeccccccc---------------------------ccchhhhhcccc
Confidence            34567999999 999999999998 6789999999987542                           345677899999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      ++++|.  .....+-.+.+..+++|+++++++.-.
T Consensus        58 ~~~~~~--~~~~~v~~~~~~~~~~~~iiiD~~Svk   90 (152)
T d2pv7a2          58 IVSVPI--NLTLETIERLKPYLTENMLLADLTSVK   90 (152)
T ss_dssp             EECSCG--GGHHHHHHHHGGGCCTTSEEEECCSCC
T ss_pred             ccccch--hhheeeeecccccccCCceEEEecccC
Confidence            999985  333334466788899999999998644

>d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.75  E-value=4.5e-08  Score=80.33  Aligned_cols=100  Identities=17%  Similarity=0.242  Sum_probs=75.2

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|||||+|+||+++++.| ..-|.++++|+++++.. +...+.+            +.....+.++++.+||+|++|++ 
T Consensus         2 kIg~IG~G~mG~al~~~l-~~~~~~i~v~~r~~~~~-~~l~~~~------------g~~~~~~~~~~~~~~dvIilavk-   66 (152)
T d2ahra2           2 KIGIIGVGKMASAIIKGL-KQTPHELIISGSSLERS-KEIAEQL------------ALPYAMSHQDLIDQVDLVILGIK-   66 (152)
T ss_dssp             EEEEECCSHHHHHHHHHH-TTSSCEEEEECSSHHHH-HHHHHHH------------TCCBCSSHHHHHHTCSEEEECSC-
T ss_pred             EEEEEeccHHHHHHHHHH-HhCCCeEEEEcChHHhH-Hhhcccc------------ceeeechhhhhhhccceeeeecc-
Confidence            699999999999999988 45688999999886542 2222222            12234689999999999999996 


Q ss_pred             CcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          247 DKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       247 ~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                       |+.    -.+.++.++++..+|+++-|  +..+.|.+.|..
T Consensus        67 -p~~----~~~vl~~l~~~~~iis~~ag--i~~~~l~~~l~~  101 (152)
T d2ahra2          67 -PQL----FETVLKPLHFKQPIISMAAG--ISLQRLATFVGQ  101 (152)
T ss_dssp             -GGG----HHHHHTTSCCCSCEEECCTT--CCHHHHHHHHCT
T ss_pred             -hHh----HHHHhhhcccceeEeccccc--ccHHHHHhhhcc
Confidence             331    14567889999999999876  566777777744

>d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 6-phosphogluconate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.71  E-value=9.5e-09  Score=86.40  Aligned_cols=130  Identities=18%  Similarity=0.188  Sum_probs=90.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCH---HHHhhcCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM---DEVLREADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~~ll~~aDiV~l  242 (342)
                      .+|||||+|+||..+|++|+ .-|.+|++||++++.. +.+.+......   ..  .......+.   -..+..++.+.+
T Consensus         2 MkIGvIGlG~MG~~ma~~L~-~~G~~V~~~dr~~~~~-~~l~~~~~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~   74 (178)
T d1pgja2           2 MDVGVVGLGVMGANLALNIA-EKGFKVAVFNRTYSKS-EEFMKANASAP---FA--GNLKAFETMEAFAASLKKPRKALI   74 (178)
T ss_dssp             BSEEEECCSHHHHHHHHHHH-HTTCCEEEECSSHHHH-HHHHHHTTTST---TG--GGEEECSCHHHHHHHBCSSCEEEE
T ss_pred             CEEEEEeehHHHHHHHHHHH-HCCCeEEEEECCHHHH-HHHHHcCCccc---cc--cchhhhhhhhHHHHhcccceEEEE
Confidence            36999999999999999985 6799999999987643 33322211100   00  011112233   344567899999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      +++........++ ..+..+++|.++||++....-+...+.+.|.+..+.....-|+..++
T Consensus        75 ~~~~~~~~~~~~~-~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~  134 (178)
T d1pgja2          75 LVQAGAATDSTIE-QLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEE  134 (178)
T ss_dssp             CCCCSHHHHHHHH-HHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHH
T ss_pred             eecCcchhhhhhh-hhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcc
Confidence            9886666555553 55778899999999999999999999999988777665555555443

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=98.59  E-value=1.6e-07  Score=78.24  Aligned_cols=121  Identities=14%  Similarity=0.178  Sum_probs=76.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCC--CccccccCCHHHHhhcCCEEEE
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ--PVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .||++|+|.|+||..+|..|+ ..|.+|.+||+.++. .+.....-.......+..  ........++++.+++||+|++
T Consensus         1 sk~iaIiGaG~~G~~~A~~l~-~~G~~V~~~~r~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii   78 (184)
T d1bg6a2           1 SKTYAVLGLGNGGHAFAAYLA-LKGQSVLAWDIDAQR-IKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILI   78 (184)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHH-HHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEE
T ss_pred             CCEEEEECccHHHHHHHHHHH-HCCCEEEEEECCHHH-HHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEE
Confidence            479999999999999999984 679999999998653 232221100000000000  1111223578999999999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~  290 (342)
                      ++|. ..+..++ ++.-..++++.+++- .-|....+..+.+.+....
T Consensus        79 ~v~~-~~~~~~~-~~i~~~l~~~~~iv~-~~g~~~~~~~~~~~~~~~~  123 (184)
T d1bg6a2          79 VVPA-IHHASIA-ANIASYISEGQLIIL-NPGATGGALEFRKILRENG  123 (184)
T ss_dssp             CSCG-GGHHHHH-HHHGGGCCTTCEEEE-SSCCSSHHHHHHHHHHHTT
T ss_pred             EEch-hHHHHHH-HHhhhccCCCCEEEE-eCCCCccHHHHHHHHHHhc
Confidence            9984 3344443 334567889998774 4444455555666666544

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=98.57  E-value=1.1e-07  Score=80.05  Aligned_cols=114  Identities=20%  Similarity=0.244  Sum_probs=76.9

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhcc------CCCC----------cccc
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKAN------GEQP----------VTWK  225 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~------~~~~----------~~~~  225 (342)
                      .+..-+|.|+|.|..|...++. |+++|++|.++|.++... +.....++.++...      .+..          ....
T Consensus        26 ~V~pa~VvViGaGvaG~~Aa~~-A~~lGA~V~v~D~~~~~~-~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~  103 (183)
T d1l7da1          26 TVPPARVLVFGVGVAGLQAIAT-AKRLGAVVMATDVRAATK-EQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKK  103 (183)
T ss_dssp             EECCCEEEEECCSHHHHHHHHH-HHHTTCEEEEECSCSTTH-HHHHHTTCEECCC-----------------------CC
T ss_pred             CcCCcEEEEEcCcHHHHHHHHH-HHHcCCEEEEEeccHHHH-HHHHHhhcceEEEeccccccccccccchhhcCHHHHHH
Confidence            3556799999999999999998 689999999999987542 22222221111100      0000          0000


Q ss_pred             ccCCHHHHhhcCCEEEEc--CCCCcccccccCHHHHhcCCCCcEEEEcC--CCcccC
Q 019387          226 RASSMDEVLREADVISLH--PVLDKTTYHLINKERLATMKKEAILVNCS--RGPVID  278 (342)
Q Consensus       226 ~~~~l~~ll~~aDiV~l~--~pl~~~t~~li~~~~l~~mk~ga~lINva--RG~~vd  278 (342)
                      ....+.+.+++||+|+.+  +| ...+..+|+++.++.||||+++||++  +|+.+.
T Consensus       104 ~~~~l~~~l~~aDlVI~talip-G~~aP~lit~~mv~~Mk~GSVIVDvaidqGGn~E  159 (183)
T d1l7da1         104 QAEAVLKELVKTDIAITTALIP-GKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCP  159 (183)
T ss_dssp             HHHHHHHHHTTCSEEEECCCCT-TSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSST
T ss_pred             HHHHHHHHHHhhhhheeeeecC-CcccceeehHHHHHhcCCCcEEEEEeecCCCccc
Confidence            112456678899999755  45 34577899999999999999999986  666553

>d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamyl tRNA-reductase middle domain
species: Archaeon Methanopyrus kandleri [TaxId: 2320]

Probab=98.51  E-value=1.3e-06  Score=72.09  Aligned_cols=103  Identities=16%  Similarity=0.234  Sum_probs=74.6

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+.+++|.|||.|.||+.+++.| ...|+ ++.+++|..+. .+.+...+       +   ..+....++.+.+.++|+|
T Consensus        21 ~l~~~~ilviGaG~~g~~v~~~L-~~~g~~~i~v~nRt~~k-a~~l~~~~-------~---~~~~~~~~~~~~l~~~Div   88 (159)
T d1gpja2          21 SLHDKTVLVVGAGEMGKTVAKSL-VDRGVRAVLVANRTYER-AVELARDL-------G---GEAVRFDELVDHLARSDVV   88 (159)
T ss_dssp             CCTTCEEEEESCCHHHHHHHHHH-HHHCCSEEEEECSSHHH-HHHHHHHH-------T---CEECCGGGHHHHHHTCSEE
T ss_pred             CcccCeEEEECCCHHHHHHHHHH-HhcCCcEEEEEcCcHHH-HHHHHHhh-------h---cccccchhHHHHhccCCEE
Confidence            47899999999999999999998 56788 69999998643 22222222       1   1122346888899999999


Q ss_pred             EEcCCCCcccccccCHHHHhcC------CCCcEEEEcCCCcccCH
Q 019387          241 SLHPVLDKTTYHLINKERLATM------KKEAILVNCSRGPVIDE  279 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~m------k~ga~lINvaRG~~vd~  279 (342)
                      +.|++   ....+|+++.++..      ++..+|||.+...-||.
T Consensus        89 i~ats---s~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr~vd~  130 (159)
T d1gpja2          89 VSATA---APHPVIHVDDVREALRKRDRRSPILIIDIANPRDVEE  130 (159)
T ss_dssp             EECCS---SSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSCSBCT
T ss_pred             EEecC---CCCccccHhhhHHHHHhcccCCCeEEEeecCCCCcCh
Confidence            99976   45678888877532      34569999987655553

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.47  E-value=1.1e-07  Score=74.07  Aligned_cols=96  Identities=14%  Similarity=0.143  Sum_probs=69.1

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..|+||+|.|||.|.+|.+-|+.| ..+|++|+++++........+...        +  ...+....--++.+..+++|
T Consensus         8 l~l~~k~vlVvG~G~va~~ka~~l-l~~ga~v~v~~~~~~~~~~~~~~~--------~--~i~~~~~~~~~~dl~~~~lv   76 (113)
T d1pjqa1           8 CQLRDRDCLIVGGGDVAERKARLL-LEAGARLTVNALTFIPQFTVWANE--------G--MLTLVEGPFDETLLDSCWLA   76 (113)
T ss_dssp             ECCBTCEEEEECCSHHHHHHHHHH-HHTTBEEEEEESSCCHHHHHHHTT--------T--SCEEEESSCCGGGGTTCSEE
T ss_pred             EEeCCCEEEEECCCHHHHHHHHHH-HHCCCeEEEEeccCChHHHHHHhc--------C--CceeeccCCCHHHhCCCcEE
Confidence            579999999999999999999998 689999999999887654443221        1  11111111113446789999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      +.+...     .-+|+.....+|+..++||++
T Consensus        77 ~~at~d-----~~~n~~i~~~a~~~~ilVNv~  103 (113)
T d1pjqa1          77 IAATDD-----DTVNQRVSDAAESRRIFCNVV  103 (113)
T ss_dssp             EECCSC-----HHHHHHHHHHHHHTTCEEEET
T ss_pred             eecCCC-----HHHHHHHHHHHHHcCCEEEeC
Confidence            888642     456777788888888999974

>d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM1727
species: Thermotoga maritima [TaxId: 2336]

Probab=98.41  E-value=3.6e-08  Score=80.52  Aligned_cols=87  Identities=14%  Similarity=0.235  Sum_probs=56.2

Q ss_pred             EEEEecCHHHHHHHHHHHhcCCcEE-EEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          168 VGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       168 vgIvG~G~IG~~vA~~l~~afg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      |||||+|+||+.+|+.| +. +.++ .+|+|+++.. +++.+.+       +      ....++++++++||+|++|+|.
T Consensus         2 IgfIG~G~mg~~l~~~L-~~-~~~~~~v~~R~~~~~-~~l~~~~-------~------~~~~~~~~~~~~~DiVil~v~d   65 (153)
T d2i76a2           2 LNFVGTGTLTRFFLECL-KD-RYEIGYILSRSIDRA-RNLAEVY-------G------GKAATLEKHPELNGVVFVIVPD   65 (153)
T ss_dssp             CEEESCCHHHHHHHHTT-C-----CCCEECSSHHHH-HHHHHHT-------C------CCCCSSCCCCC---CEEECSCT
T ss_pred             EEEEeCcHHHHHHHHHH-Hh-CCCEEEEEeCChhhh-cchhhcc-------c------ccccchhhhhccCcEEEEeccc
Confidence            79999999999999987 44 3444 5799887543 3332221       1      1235778889999999999995


Q ss_pred             CcccccccCHHHHhcC-CCCcEEEEcCCCcc
Q 019387          247 DKTTYHLINKERLATM-KKEAILVNCSRGPV  276 (342)
Q Consensus       247 ~~~t~~li~~~~l~~m-k~ga~lINvaRG~~  276 (342)
                      . ..     .+.+..+ ++|.++|+++-+..
T Consensus        66 ~-~i-----~~v~~~l~~~~~ivi~~s~~~~   90 (153)
T d2i76a2          66 R-YI-----KTVANHLNLGDAVLVHCSGFLS   90 (153)
T ss_dssp             T-TH-----HHHHTTTCCSSCCEEECCSSSC
T ss_pred             h-hh-----hHHHhhhcccceeeeecccchh
Confidence            3 22     3455556 47999999987654

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=98.40  E-value=9.2e-07  Score=75.77  Aligned_cols=107  Identities=23%  Similarity=0.295  Sum_probs=78.8

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-cCCEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~aDiV  240 (342)
                      +|.||||+|.|+|++|+.+|+.| ...|++|+++|..+... .... .+       +     . ...+.++++. .||++
T Consensus        24 ~L~gk~v~IqG~G~VG~~~A~~L-~~~Gakvvv~d~d~~~~-~~~~-~~-------g-----~-~~~~~~~~~~~~~DI~   87 (201)
T d1c1da1          24 SLDGLTVLVQGLGAVGGSLASLA-AEAGAQLLVADTDTERV-AHAV-AL-------G-----H-TAVALEDVLSTPCDVF   87 (201)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHHH-HHHH-HT-------T-----C-EECCGGGGGGCCCSEE
T ss_pred             CCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEecchHHHH-HHHH-hh-------c-----c-cccCccccccccceee
Confidence            59999999999999999999998 68999999999876542 1111 10       1     1 1235566665 79999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i  291 (342)
                      +-|.     +.+.|+++...+++- -+++..+-+++.+++ .-+.|++..|
T Consensus        88 iPcA-----~~~~I~~~~a~~i~a-k~i~e~AN~p~~~~~-~~~~L~~rgI  131 (201)
T d1c1da1          88 APCA-----MGGVITTEVARTLDC-SVVAGAANNVIADEA-ASDILHARGI  131 (201)
T ss_dssp             EECS-----CSCCBCHHHHHHCCC-SEECCSCTTCBCSHH-HHHHHHHTTC
T ss_pred             eccc-----ccccccHHHHhhhhh-heeeccCCCCcchhh-HHHHhcccce
Confidence            8764     358899999999984 477778888887775 4566666555

>d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Pyrroline-5-carboxylate reductase ProC
species: Neisseria meningitidis, serogroup B [TaxId: 487]

Probab=98.14  E-value=2.3e-06  Score=69.65  Aligned_cols=99  Identities=18%  Similarity=0.245  Sum_probs=65.3

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|||||+|+||+++++.|.++-+.+|.+||++++.. +.+.+.+       +     .....+.++ +.+||+|++|++ 
T Consensus         2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~-~~l~~~~-------~-----~~~~~~~~~-v~~~Div~lavk-   66 (152)
T d1yqga2           2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKR-ERLEKEL-------G-----VETSATLPE-LHSDDVLILAVK-   66 (152)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHH-HHHHHHT-------C-----CEEESSCCC-CCTTSEEEECSC-
T ss_pred             EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHH-HHhhhhc-------c-----ccccccccc-ccccceEEEecC-
Confidence            799999999999999976555347999999997543 3322221       1     122344444 577999999997 


Q ss_pred             CcccccccCHHHHhcCC-CCcEEEEcCCCcccCHHHHHHHHH
Q 019387          247 DKTTYHLINKERLATMK-KEAILVNCSRGPVIDEVALVEHLK  287 (342)
Q Consensus       247 ~~~t~~li~~~~l~~mk-~ga~lINvaRG~~vd~~aL~~aL~  287 (342)
                       |+.-    .+.++.++ .+.++|++.-|-  ..+.|.+.|.
T Consensus        67 -P~~~----~~v~~~l~~~~~~viS~~ag~--~~~~l~~~l~  101 (152)
T d1yqga2          67 -PQDM----EAACKNIRTNGALVLSVAAGL--SVGTLSRYLG  101 (152)
T ss_dssp             -HHHH----HHHHTTCCCTTCEEEECCTTC--CHHHHHHHTT
T ss_pred             -HHHH----HHhHHHHhhcccEEeecccCC--CHHHHHHHhC
Confidence             3211    22333343 478999987765  4566777663

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=6.5e-06  Score=69.71  Aligned_cols=141  Identities=13%  Similarity=0.128  Sum_probs=92.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH--HHh-hhhhhhhccCCCC-------------ccccccCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVT-AYGQFLKANGEQP-------------VTWKRASS  229 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~--~~~-~~~~~~~~~~~~~-------------~~~~~~~~  229 (342)
                      |+|+|||.|.||+.+|..++ ..|.+|+.||+.++.....  ..+ .+..... .+...             .......+
T Consensus         5 kkvaViGaG~mG~~iA~~~a-~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~-~~~~~~~~~~~~~~~~~l~~i~~~~d   82 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAA-ATGHTVVLVDQTEDILAKSKKGIEESLRKVAK-KKFAENPKAGDEFVEKTLSTIATSTD   82 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSCHHHHHHHHHHHHHHHHHHHH-TTSSSCHHHHHHHHHHHHHTEEEESC
T ss_pred             EEEEEECcCHHHHHHHHHHH-hCCCcEEEEECChHHHHHHHhhHHHHHHHHHH-hhhhccchhhHHHHHHHHhhccccch
Confidence            69999999999999999975 7899999999998642111  111 1111111 11100             11224568


Q ss_pred             HHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcc
Q 019387          230 MDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFS  307 (342)
Q Consensus       230 l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~  307 (342)
                      +.+.+++||+|+=|+|-+-+.+.-+-++.=+.++++++|...+-+  +.-..|.+.+.. .-+..++=-|.+-+  |-+-
T Consensus        83 ~~~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~--l~i~~la~~~~~-p~r~ig~HffnP~~~~~lVE  159 (192)
T d1f0ya2          83 AASVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSS--LQITSIANATTR-QDRFAGLHFFNPVPVMKLVE  159 (192)
T ss_dssp             HHHHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSS--SCHHHHHTTSSC-GGGEEEEEECSSTTTCCEEE
T ss_pred             hHhhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcc--cccchhhhhccC-HhHEEeeccccccCcccEEE
Confidence            889999999999999988787766666666778999988876554  445557776643 45556665554333  4455


Q ss_pred             cccc
Q 019387          308 SFKH  311 (342)
Q Consensus       308 ~tPh  311 (342)
                      +.||
T Consensus       160 Iv~g  163 (192)
T d1f0ya2         160 VIKT  163 (192)
T ss_dssp             EECC
T ss_pred             EcCC
Confidence            5565

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=4.4e-06  Score=62.23  Aligned_cols=73  Identities=23%  Similarity=0.187  Sum_probs=49.4

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      ++.||+|.|+|+|..|+++|+.| ...|++|.++|.+........       +.. .   ........-++.+.+.|+|+
T Consensus         2 ~~~~K~v~ViGlG~sG~s~a~~L-~~~g~~v~~~D~~~~~~~~~~-------~~~-~---~~~~~~~~~~~~~~~~d~vi   69 (93)
T d2jfga1           2 DYQGKNVVIIGLGLTGLSCVDFF-LARGVTPRVMDTRMTPPGLDK-------LPE-A---VERHTGSLNDEWLMAADLIV   69 (93)
T ss_dssp             CCTTCCEEEECCSHHHHHHHHHH-HHTTCCCEEEESSSSCTTGGG-------SCT-T---SCEEESBCCHHHHHHCSEEE
T ss_pred             CcCCCEEEEEeECHHHHHHHHHH-HHCCCEEEEeeCCcCchhHHH-------Hhh-c---cceeecccchhhhccCCEEE
Confidence            47899999999999999999997 689999999998765331110       000 1   11111111255678899999


Q ss_pred             EcCCC
Q 019387          242 LHPVL  246 (342)
Q Consensus       242 l~~pl  246 (342)
                      +..-.
T Consensus        70 ~SPGi   74 (93)
T d2jfga1          70 ASPGI   74 (93)
T ss_dssp             ECTTS
T ss_pred             ECCCC
Confidence            87543

>d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class I ketol-acid reductoisomerase (KARI)
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.03  E-value=2.6e-06  Score=70.61  Aligned_cols=92  Identities=22%  Similarity=0.263  Sum_probs=68.2

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      -|.+|+|+|||||.=|++=|..| +.-|++|.+--+......++..        .++     + ...+++|+.++||+|.
T Consensus        13 ~ik~k~IaViGYGsQG~AhAlNL-rDSG~~V~VGLr~gs~s~~~A~--------~~G-----f-~v~~~~eA~~~aDiim   77 (182)
T d1np3a2          13 IIQGKKVAIIGYGSQGHAHACNL-KDSGVDVTVGLRSGSATVAKAE--------AHG-----L-KVADVKTAVAAADVVM   77 (182)
T ss_dssp             HHHTSCEEEECCSHHHHHHHHHH-HHTTCCEEEECCTTCHHHHHHH--------HTT-----C-EEECHHHHHHTCSEEE
T ss_pred             HHCCCEEEEEeeCcHhHHHHhhh-hhcCCCEEEEcCCCCccHHHHh--------hhc-----c-ccccHHHHhhhcCeee
Confidence            57899999999999999999998 7889998865444332222111        111     2 2468999999999999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEE
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILV  269 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lI  269 (342)
                      +.+|. +.-..+..++....||+|+.+.
T Consensus        78 ~L~PD-~~q~~vy~~~I~p~lk~g~~L~  104 (182)
T d1np3a2          78 ILTPD-EFQGRLYKEEIEPNLKKGATLA  104 (182)
T ss_dssp             ECSCH-HHHHHHHHHHTGGGCCTTCEEE
T ss_pred             eecch-HHHHHHHHHhhhhhcCCCcEEE
Confidence            99993 3334566677888999998775

>d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Escherichia coli [TaxId: 562]

Probab=97.99  E-value=1.6e-05  Score=65.50  Aligned_cols=79  Identities=15%  Similarity=0.133  Sum_probs=65.3

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      +.++.||++.|||-+. +|+++|.+| ..-|++|+..+.+.                            .++.+.+++||
T Consensus        32 ~i~l~GK~v~VIGrS~~VG~Pla~lL-~~~gatVt~~h~~t----------------------------~~l~~~~~~AD   82 (166)
T d1b0aa1          32 NIDTFGLNAVVIGASNIVGRPMSMEL-LLAGCTTTVTHRFT----------------------------KNLRHHVENAD   82 (166)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HTTTCEEEEECSSC----------------------------SCHHHHHHHCS
T ss_pred             CcccccceEEEEeccccccHHHHHHH-HHhhcccccccccc----------------------------chhHHHHhhhh
Confidence            3578999999999998 899999998 57899998876432                            36788889999


Q ss_pred             EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      +|+.++..    .++|..+   ++|+|+++||++--
T Consensus        83 ivI~a~G~----p~~i~~~---~vk~g~vvIDvGi~  111 (166)
T d1b0aa1          83 LLIVAVGK----PGFIPGD---WIKEGAIVIDVGIN  111 (166)
T ss_dssp             EEEECSCC----TTCBCTT---TSCTTCEEEECCCE
T ss_pred             HhhhhccC----ccccccc---ccCCCcEEEecCce
Confidence            99999874    4778765   56899999999743

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=97.98  E-value=7.2e-06  Score=69.04  Aligned_cols=141  Identities=16%  Similarity=0.160  Sum_probs=88.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH---HhhhhhhhhccCCCCc-------cccccCCHHHHhh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF---VTAYGQFLKANGEQPV-------TWKRASSMDEVLR  235 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~---~~~~~~~~~~~~~~~~-------~~~~~~~l~~ll~  235 (342)
                      ++|+|||.|.||+.+|..++ ..|.+|..||+.++......   ...+..........+.       ......+++ .+.
T Consensus         5 ~~vaViGaG~mG~~iA~~~a-~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~   82 (186)
T d1wdka3           5 KQAAVLGAGIMGGGIAYQSA-SKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYG-DFG   82 (186)
T ss_dssp             SSEEEECCHHHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSST-TGG
T ss_pred             CEEEEECcCHHHHHHHHHHH-hCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccc-ccc
Confidence            57999999999999998875 67999999999876421111   1111111111111100       011122333 468


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC--CCcccccc
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE--LGFSSFKH  311 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP--~~~~~tPh  311 (342)
                      +||+|+-++|-+-+.+.=+-++.-+.++++++|...+-+-  .-..|.+.+.. .=+..++=.|.+-+  |-+-+.|+
T Consensus        83 ~adlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l--~i~~la~~~~~-p~r~~g~Hf~nP~~~~~lVEiv~~  157 (186)
T d1wdka3          83 NVDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALKR-PENFVGMHFFNPVHMMPLVEVIRG  157 (186)
T ss_dssp             GCSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSC-GGGEEEEECCSSTTTCCEEEEEEC
T ss_pred             ccceeeeeecchHHHHHHHHHHHHhhcCCCeeEEeccccc--cHHHHHHhccC-chheEeeccccCcccCCeEEECCC
Confidence            8999999999888888777777778899999998876654  44667776643 44455655454433  33334444

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=97.97  E-value=6.4e-06  Score=69.61  Aligned_cols=109  Identities=13%  Similarity=0.146  Sum_probs=67.9

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhh-hhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTA-YGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      ++-++|+|+|.|.+|.++|..|+ .-|-+|..|++.++.. +..... ....+...-..+.......++++++.+||+|+
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La-~~g~~V~l~~r~~~~~-~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~ii   82 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLS-KKCREVCVWHMNEEEV-RLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIIL   82 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHH-TTEEEEEEECSCHHHH-HHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEE
T ss_pred             ceeceEEEECCCHHHHHHHHHHH-HcCCeEEEEEecHHHH-HHHhhcccccccccccccccccccchhhhhccCCCCEEE
Confidence            44568999999999999999985 5578999999876432 211110 00000001111223344578999999999999


Q ss_pred             EcCCCCcccccccCHH----HHhcCCCCcEEEEcCCC
Q 019387          242 LHPVLDKTTYHLINKE----RLATMKKEAILVNCSRG  274 (342)
Q Consensus       242 l~~pl~~~t~~li~~~----~l~~mk~ga~lINvaRG  274 (342)
                      +++|. ...+.++.+-    .....+++..+|+++.|
T Consensus        83 iavPs-~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG  118 (189)
T d1n1ea2          83 FVIPT-QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG  118 (189)
T ss_dssp             ECSCH-HHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred             EcCcH-HHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence            99994 3333333221    01123567789998877

>d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.6e-05  Score=63.71  Aligned_cols=83  Identities=18%  Similarity=0.317  Sum_probs=66.3

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      +.+++||++.|||-+. +|+++|.+| ..-|++|..++.+.                            .++.+..++||
T Consensus        34 ~i~l~Gk~vvVIGrS~iVGrPLa~lL-~~~gatVt~~~~~t----------------------------~~l~~~~~~aD   84 (170)
T d1a4ia1          34 GVPIAGRHAVVVGRSKIVGAPMHDLL-LWNNATVTTCHSKT----------------------------AHLDEEVNKGD   84 (170)
T ss_dssp             TCCCTTCEEEEECCCTTTHHHHHHHH-HHTTCEEEEECTTC----------------------------SSHHHHHTTCS
T ss_pred             CcccccceEEEEecCCccchHHHHHH-HhccCceEEEeccc----------------------------ccHHHHHhhcc
Confidence            4679999999999987 899999998 57799999887542                            36778889999


Q ss_pred             EEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccC
Q 019387          239 VISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       239 iV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd  278 (342)
                      +|+.+.+.    .+++..+   +.|+|+++||++--.+.|
T Consensus        85 ivi~a~G~----~~~i~~~---~vk~g~iviDvgi~~~~~  117 (170)
T d1a4ia1          85 ILVVATGQ----PEMVKGE---WIKPGAIVIDCGINYVPD  117 (170)
T ss_dssp             EEEECCCC----TTCBCGG---GSCTTCEEEECCCBC---
T ss_pred             chhhcccc----ccccccc---cccCCCeEeccCcccccc
Confidence            99999874    4677765   578999999998554444

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=97.84  E-value=0.00011  Score=63.77  Aligned_cols=109  Identities=17%  Similarity=0.245  Sum_probs=78.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDi  239 (342)
                      .+|.|+||.|-|+|++|+.+|+.| ...|++|++.|.+... .......+       +.      ...+.++++ ..||+
T Consensus        35 ~~l~g~~v~IqG~GnVG~~~a~~L-~~~Gakvv~~d~~~~~-~~~~~~~~-------g~------~~~~~~~~~~~~cDI   99 (230)
T d1leha1          35 DSLEGLAVSVQGLGNVAKALCKKL-NTEGAKLVVTDVNKAA-VSAAVAEE-------GA------DAVAPNAIYGVTCDI   99 (230)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSCHHH-HHHHHHHH-------CC------EECCGGGTTTCCCSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEeecccHHH-HHHHHHhc-------CC------cccCCcccccccccE
Confidence            569999999999999999999998 6899999999987643 22222221       11      112333333 56999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i  291 (342)
                      ++-|.     ..+.|+++....++- .+++-.+-.++.+.++. +.|.+..|
T Consensus       100 l~PcA-----~~~~I~~~~~~~l~a-k~Ive~ANn~~t~~ea~-~~L~~rGI  144 (230)
T d1leha1         100 FAPCA-----LGAVLNDFTIPQLKA-KVIAGSADNQLKDPRHG-KYLHELGI  144 (230)
T ss_dssp             EEECS-----CSCCBSTTHHHHCCC-SEECCSCSCCBSSHHHH-HHHHHHTC
T ss_pred             ecccc-----cccccChHHhhccCc-cEEEecccCCCCCchHH-HHHHhhCc
Confidence            99885     368899988888884 47788888888887654 44555444

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.82  E-value=3.3e-05  Score=65.53  Aligned_cols=116  Identities=12%  Similarity=0.100  Sum_probs=72.5

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhh--------hhhhccCCCCccccccCCHHHHhhcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYG--------QFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      +|+|+|+|.+|..+|..|+ ..|.+|++||...+. .+.......        ..+.. ...........++++.+..||
T Consensus         2 kI~ViGlG~vGl~~a~~la-~~g~~V~g~D~n~~~-i~~ln~g~~p~~e~~~~~~l~~-~~~~~~~~~~~~~~~~i~~~d   78 (202)
T d1mv8a2           2 RISIFGLGYVGAVCAGCLS-ARGHEVIGVDVSSTK-IDLINQGKSPIVEPGLEALLQQ-GRQTGRLSGTTDFKKAVLDSD   78 (202)
T ss_dssp             EEEEECCSTTHHHHHHHHH-HTTCEEEEECSCHHH-HHHHHTTCCSSCCTTHHHHHHH-HHHTTCEEEESCHHHHHHTCS
T ss_pred             EEEEECCCHhHHHHHHHHH-hCCCcEEEEeCCHHH-HHHhcccCCcccchhhhhhhhh-hhcccccccCCCHHHHHhhCC
Confidence            6999999999999999985 679999999987642 222211000        00000 000011123467889999999


Q ss_pred             EEEEcCCCCccccc---------ccC--HHHHhcCCCCcEEEEcCCCcccCHHHHHHH
Q 019387          239 VISLHPVLDKTTYH---------LIN--KERLATMKKEAILVNCSRGPVIDEVALVEH  285 (342)
Q Consensus       239 iV~l~~pl~~~t~~---------li~--~~~l~~mk~ga~lINvaRG~~vd~~aL~~a  285 (342)
                      ++++|+|......+         .++  ...++..+++.++|.-+.-..=..+.+...
T Consensus        79 ~i~i~VpTP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~  136 (202)
T d1mv8a2          79 VSFICVGTPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIP  136 (202)
T ss_dssp             EEEECCCCCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHH
T ss_pred             EEEEecCccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhh
Confidence            99999985321111         111  134556778999999888766556555543

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.78  E-value=4.7e-05  Score=63.39  Aligned_cols=107  Identities=19%  Similarity=0.211  Sum_probs=64.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhH-HHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATR-LEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .+|+|+|.|++|.++|..|+ .-|-+|..|.+..+.. .+.....-..................+++++++.||+|++++
T Consensus         1 MkI~ViGaG~~GtalA~~la-~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~av   79 (180)
T d1txga2           1 MIVSILGAGAMGSALSVPLV-DNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGV   79 (180)
T ss_dssp             CEEEEESCCHHHHHHHHHHH-HHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECS
T ss_pred             CEEEEECCCHHHHHHHHHHH-HCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhccc
Confidence            37999999999999999986 4578999998754332 121111000000000011112233568899999999999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      |. ...+..+.+ ....+++ ..+|.++.|..
T Consensus        80 ps-~~~~~~~~~-l~~~l~~-~~ii~~tkg~~  108 (180)
T d1txga2          80 ST-DGVLPVMSR-ILPYLKD-QYIVLISKGLI  108 (180)
T ss_dssp             CG-GGHHHHHHH-HTTTCCS-CEEEECCCSEE
T ss_pred             ch-hhhHHHHHh-hcccccc-ceecccccCcc
Confidence            94 344444433 3444555 46666777754

>d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Class II ketol-acid reductoisomerase (KARI)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=97.77  E-value=2.5e-05  Score=66.67  Aligned_cols=95  Identities=21%  Similarity=0.165  Sum_probs=62.8

Q ss_pred             cCC-CeEEEEecCHHHHHHHHHHHhc------CCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh
Q 019387          163 LKG-QTVGVIGAGRIGSAYARMMVEG------FKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (342)
Q Consensus       163 L~g-ktvgIvG~G~IG~~vA~~l~~a------fg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll  234 (342)
                      +.| |+|+|||||.-|++=|..| +.      -|.+|.+ ..+.......+.         .++-..... ...+.+|+.
T Consensus        41 ~kg~KkIaViGYGsQG~AhAlNL-rDSG~~~~sgv~V~VGLr~gs~S~~kA~---------~dGf~v~~~-~v~~v~EAv  109 (226)
T d1qmga2          41 FKGIKQIGVIGWGSQAPAQAQNL-KDSLTEAKSDVVVKIGLRKGSNSFAEAR---------AAGFSEENG-TLGDMWETI  109 (226)
T ss_dssp             TTTCSEEEEECCSSHHHHHHHHH-HHHHHHTTCCCEEEEEECTTCSCHHHHH---------HTTCCGGGT-CEEEHHHHH
T ss_pred             hcCCCEEEEEEeccHHHHHHHhC-hhhcccccCCceEEEEeCCCChhHHHHH---------HcCCccCCC-cccCHHHHH
Confidence            578 8999999999999999998 65      5677764 433322221111         112111110 134788999


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEE
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVN  270 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lIN  270 (342)
                      ++||+|.+.+|...+ ..+. ++....||+|+.+.=
T Consensus       110 ~~ADiVmiLlPDe~Q-~~vy-~~I~p~Lk~G~~L~F  143 (226)
T d1qmga2         110 SGSDLVLLLISDSAQ-ADNY-EKVFSHMKPNSILGL  143 (226)
T ss_dssp             HTCSEEEECSCHHHH-HHHH-HHHHHHSCTTCEEEE
T ss_pred             hhCCEEEEecchHHH-HHHH-HHHHHhcCCCceeee
Confidence            999999999995333 3344 468889999987653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=97.71  E-value=2e-05  Score=62.05  Aligned_cols=75  Identities=12%  Similarity=0.259  Sum_probs=51.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc--cccccCCHHHH-hhcCCEEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEV-LREADVISL  242 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~l-l~~aDiV~l  242 (342)
                      |++.|+|+|.+|+.+|+.| ...|.+|+++|..++.. +..        ...+....  .......|+++ +.+||.+++
T Consensus         1 k~~iIiG~G~~G~~la~~L-~~~g~~vvvid~d~~~~-~~~--------~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           1 KQFAVIGLGRFGGSIVKEL-HRMGHEVLAVDINEEKV-NAY--------ASYATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             CCEEEECCSHHHHHHHHHH-HHTTCCCEEEESCHHHH-HHT--------TTTCSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-HHCCCeEEEecCcHHHH-HHH--------HHhCCcceeeecccchhhhccCCccccEEEE
Confidence            6789999999999999998 68899999999987542 221        11111111  01123455555 789999999


Q ss_pred             cCCCCccc
Q 019387          243 HPVLDKTT  250 (342)
Q Consensus       243 ~~pl~~~t  250 (342)
                      ++|.+.++
T Consensus        71 ~~~~~~~~   78 (134)
T d2hmva1          71 AIGANIQA   78 (134)
T ss_dssp             CCCSCHHH
T ss_pred             EcCchHHh
Confidence            99865443

>d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Ornithine cyclodeaminase
species: Pseudomonas putida [TaxId: 303]

Probab=97.71  E-value=9.4e-05  Score=67.80  Aligned_cols=98  Identities=20%  Similarity=0.299  Sum_probs=71.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      -++++|||.|..++.-++.+..-|+. +|.+|+++++.. +++.+.+    .  ...+..+....+++++++.||+|++|
T Consensus       128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~-~~~~~~l----~--~~~g~~v~~~~s~~eav~~ADIi~t~  200 (340)
T d1x7da_         128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLAT-AKLIANL----K--EYSGLTIRRASSVAEAVKGVDIITTV  200 (340)
T ss_dssp             CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHH-HHHHHHH----T--TCTTCEEEECSSHHHHHTTCSEEEEC
T ss_pred             CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHH-HHHHHhh----h--hccCCCceecCCHHHHHhcCCceeec
Confidence            36899999999999988876556776 799999987643 3333222    1  12233445678999999999999998


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ++ ++.+.-+|..+   .+|||+.+..+|-
T Consensus       201 Ta-s~s~~Pv~~~~---~l~pG~hI~aiGs  226 (340)
T d1x7da_         201 TA-DKAYATIITPD---MLEPGMHLNAVGG  226 (340)
T ss_dssp             CC-CSSEEEEECGG---GCCTTCEEEECSC
T ss_pred             cc-cCCCCcccchh---hcCCCCEEeeccc
Confidence            86 45566788764   5789999988864

>d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=1.2e-05  Score=66.74  Aligned_cols=109  Identities=16%  Similarity=0.172  Sum_probs=68.5

Q ss_pred             cccccCCCeEEEEecCHH-HHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387          159 VGNLLKGQTVGVIGAGRI-GSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       159 ~~~~L~gktvgIvG~G~I-G~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                      .|.++.||++.|||-++| |+++|.+| ..-|+.|...+.........   ..+......+.........+.+++...++
T Consensus        23 ~g~~l~GK~vvVIGrS~iVG~Pla~lL-~~~gaTVt~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~lk~~~~~a   98 (171)
T d1edza1          23 EGNRLYGKKCIVINRSEIVGRPLAALL-ANDGATVYSVDVNNIQKFTR---GESLKLNKHHVEDLGEYSEDLLKKCSLDS   98 (171)
T ss_dssp             TTCTTTTCEEEEECCCTTTHHHHHHHH-HTTSCEEEEECSSEEEEEES---CCCSSCCCCEEEEEEECCHHHHHHHHHHC
T ss_pred             ccCCCCCCEEEEECCccccHHHHHHHH-HHCCCEEEEecccccccccc---ccceeeeeeccccccccchhHHhhccccC
Confidence            467899999999999976 99999998 57899999877543210000   00000000000000000112377888899


Q ss_pred             CEEEEcCCCCcccccc-cCHHHHhcCCCCcEEEEcCCCcccC
Q 019387          238 DVISLHPVLDKTTYHL-INKERLATMKKEAILVNCSRGPVID  278 (342)
Q Consensus       238 DiV~l~~pl~~~t~~l-i~~~~l~~mk~ga~lINvaRG~~vd  278 (342)
                      |+|+.++|..    ++ +..+   +.|+|+++||+|-...++
T Consensus        99 DIvIsavG~p----~~~i~~d---~ik~GavvIDvGi~~~~~  133 (171)
T d1edza1          99 DVVITGVPSE----NYKFPTE---YIKEGAVCINFACTKNFS  133 (171)
T ss_dssp             SEEEECCCCT----TCCBCTT---TSCTTEEEEECSSSCCBC
T ss_pred             CEEEEccCCC----ccccChh---hcccCceEeecccccccc
Confidence            9999999842    33 5554   568999999999765444

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=3.2e-05  Score=62.66  Aligned_cols=99  Identities=10%  Similarity=0.090  Sum_probs=63.3

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      .+|+|+|.|.||..+|..|+ ..|.+|..+++..+.....     .  ...............+..+.+..+|+|+++++
T Consensus         1 MkI~IiGaG~iG~~~a~~L~-~~G~~V~~~~r~~~~~~~~-----~--~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vk   72 (167)
T d1ks9a2           1 MKITVLGCGALGQLWLTALC-KQGHEVQGWLRVPQPYCSV-----N--LVETDGSIFNESLTANDPDFLATSDLLLVTLK   72 (167)
T ss_dssp             CEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSCCSEEEE-----E--EECTTSCEEEEEEEESCHHHHHTCSEEEECSC
T ss_pred             CEEEEECcCHHHHHHHHHHH-HCCCceEEEEcCHHHhhhh-----c--cccCCccccccccccchhhhhcccceEEEeec
Confidence            37999999999999999985 5799999999887532100     0  00000011111122345667789999999998


Q ss_pred             CCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          246 LDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      . .++...+ +.....+++++.++.+.-|
T Consensus        73 a-~~~~~~~-~~l~~~~~~~~~Iv~~qNG   99 (167)
T d1ks9a2          73 A-WQVSDAV-KSLASTLPVTTPILLIHNG   99 (167)
T ss_dssp             G-GGHHHHH-HHHHTTSCTTSCEEEECSS
T ss_pred             c-cchHHHH-HhhccccCcccEEeeccCc
Confidence            4 4444433 2334566788888887665

>d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.55  E-value=0.00091  Score=57.84  Aligned_cols=118  Identities=18%  Similarity=0.205  Sum_probs=77.7

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc------h----hHHHHHHhhhhhhhhccCCCCccccccCCH
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ------A----TRLEKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .++.|++|.|-|+|++|+.+|+.|++.+|++|++.+.+.      .    ..+..+.+..+.      ..........+.
T Consensus        27 ~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~------~~~~~~~~~~~~  100 (234)
T d1b26a1          27 IDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGT------VVTYPKGERITN  100 (234)
T ss_dssp             CCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSC------STTCSSCEEECH
T ss_pred             CCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcc------eeccccceeecc
Confidence            568999999999999999999997556899999765321      0    111111111110      000000112355


Q ss_pred             HHHhh-cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          231 DEVLR-EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       231 ~~ll~-~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ++++. .||+++-|.     ..+.|+.+...+++-. +++-.+-+++- .++ .+.|.+..|.
T Consensus       101 ~~~~~~~~DI~~PcA-----~~~~I~~~~a~~l~~~-~I~e~AN~p~t-~~a-~~~L~~rgI~  155 (234)
T d1b26a1         101 EELLELDVDILVPAA-----LEGAIHAGNAERIKAK-AVVEGANGPTT-PEA-DEILSRRGIL  155 (234)
T ss_dssp             HHHHTSCCSEEEECS-----CTTCBCHHHHTTCCCS-EEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             ccccccccceeecch-----hcccccHHHHHHhhhc-eEeecCCCCCC-HHH-HHHHHHCCeE
Confidence            66765 899998774     3589999999999864 78888888864 444 4777776554

>d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.50  E-value=0.00038  Score=58.15  Aligned_cols=119  Identities=13%  Similarity=0.262  Sum_probs=73.9

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh--------hhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY--------GQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      +|+|||+|.+|..+|..+  +.|.+|++||..++. .+......        ..+... ..  .......+......++|
T Consensus         2 kI~ViGlG~vGl~~a~~~--a~g~~V~g~Din~~~-v~~l~~g~~p~~e~~l~~~~~~-~~--~~~~~~~~~~~~~~~~~   75 (196)
T d1dlja2           2 KIAVAGSGYVGLSLGVLL--SLQNEVTIVDILPSK-VDKINNGLSPIQDEYIEYYLKS-KQ--LSIKATLDSKAAYKEAE   75 (196)
T ss_dssp             EEEEECCSHHHHHHHHHH--TTTSEEEEECSCHHH-HHHHHTTCCSSCCHHHHHHHHH-SC--CCEEEESCHHHHHHHCS
T ss_pred             EEEEECCChhHHHHHHHH--HCCCcEEEEECCHHH-HHHHhhcccccchhhHHHHhhh-hh--hhhhccchhhhhhhccc
Confidence            799999999999999875  469999999998753 22211100        000000 00  11112245566678999


Q ss_pred             EEEEcCCCCccccc-ccC-------HHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCc
Q 019387          239 VISLHPVLDKTTYH-LIN-------KERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       239 iV~l~~pl~~~t~~-li~-------~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i  291 (342)
                      ++++|+|....... +.+       .+.+...+++.++|.-+.-.+=..+.+.+-+.+.++
T Consensus        76 ii~v~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~  136 (196)
T d1dlja2          76 LVIIATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRI  136 (196)
T ss_dssp             EEEECCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCE
T ss_pred             cccccCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhh
Confidence            99999997654332 211       123334567888888777776677777777766544

>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Pyrobaculum islandicum [TaxId: 2277]

Probab=97.50  E-value=0.0013  Score=57.05  Aligned_cols=119  Identities=17%  Similarity=0.257  Sum_probs=74.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch----------hHHHHHHhhhh----hhhhccCCCCccccc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA----------TRLEKFVTAYG----QFLKANGEQPVTWKR  226 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~----------~~~~~~~~~~~----~~~~~~~~~~~~~~~  226 (342)
                      .+|.|+||.|-|+|++|+.+|+.| ...|++|++++....          ..+.+.....+    .+.....    +...
T Consensus        27 ~~l~g~~v~IqGfGnVG~~~a~~L-~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~----~~~~  101 (242)
T d1v9la1          27 GGIEGKTVAIQGMGNVGRWTAYWL-EKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKD----NAEF  101 (242)
T ss_dssp             SCCTTCEEEEECCSHHHHHHHHHH-HTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTS----CCCC
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhcc----CceE
Confidence            368999999999999999999998 689999997664320          01111000000    0000000    0011


Q ss_pred             cCCHHHHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          227 ASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       227 ~~~l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ..+-++++ ..||+++-|..     .+.|+++...+++- .+++-.+-+++ ..++ .+.|.+..|.
T Consensus       102 ~~~~~~i~~~~~DIliPcA~-----~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a-~~~L~~rgI~  160 (242)
T d1v9la1         102 VKNPDAIFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEA-ERILYERGVV  160 (242)
T ss_dssp             CSSTTGGGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHH-HHHHHTTTCE
T ss_pred             eeCcchhccccccEEeecch-----hccccHHHHHhccc-CEEEecCCCCC-ChhH-HHHHHhCCeE
Confidence            12223444 47999998864     57888888888874 48888888886 5666 4778776664

>d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Escherichia coli [TaxId: 562]

Probab=97.48  E-value=0.00032  Score=57.53  Aligned_cols=115  Identities=15%  Similarity=0.076  Sum_probs=74.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH-HhhcCCE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE-VLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-ll~~aDi  239 (342)
                      ..+.||+|.|+|.|..+++++..| ...|++|..++|+.+.. +.....+..    ...  .  . ..++++ ...++|+
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~al-~~~g~~i~I~nRt~~ka-~~l~~~~~~----~~~--~--~-~~~~~~~~~~~~dl   82 (170)
T d1nyta1          14 FIRPGLRILLIGAGGASRGVLLPL-LSLDCAVTITNRTVSRA-EELAKLFAH----TGS--I--Q-ALSMDELEGHEFDL   82 (170)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSHHHH-HHHHHHTGG----GSS--E--E-ECCSGGGTTCCCSE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHh-cccceEEEeccchHHHH-HHHHHHHhh----ccc--c--c-ccccccccccccce
Confidence            467899999999999999999987 57899999999987542 332222211    110  0  0 112222 2367999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      |+.|.|..-...  .+...++.++++.+++++.-.+. .+.-|..|-+.|
T Consensus        83 iIN~Tp~G~~~~--~~~~~~~~~~~~~~v~D~vY~P~-~T~ll~~A~~~G  129 (170)
T d1nyta1          83 IINATSSGISGD--IPAIPSSLIHPGIYCYDMFYQKG-KTPFLAWCEQRG  129 (170)
T ss_dssp             EEECCSCGGGTC--CCCCCGGGCCTTCEEEESCCCSS-CCHHHHHHHHTT
T ss_pred             eecccccCcccC--CCCCcHHHhccCcEEEEeecCCC-CCHHHHHHHHcC
Confidence            999999754322  22233566889999999977764 334455555555

>d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Putative shikimate dehydrogenase YdiB
species: Escherichia coli [TaxId: 562]

Probab=97.46  E-value=0.00023  Score=59.05  Aligned_cols=110  Identities=16%  Similarity=0.238  Sum_probs=70.2

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH--HHHHHhhhhhhhhccCCCCc---cccccCCHHHH
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR--LEKFVTAYGQFLKANGEQPV---TWKRASSMDEV  233 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~l  233 (342)
                      +.++.||+|.|+|.|..|++++..|+ ..|+ +++.++|+++..  ...+.+.+..   . .....   .+....++.+.
T Consensus        13 ~~~l~~k~vlIlGaGGaarai~~al~-~~g~~~i~i~nR~~~~~~~~~~l~~~~~~---~-~~~~~~~~~~~~~~~~~~~   87 (182)
T d1vi2a1          13 GFDIKGKTMVLLGAGGASTAIGAQGA-IEGLKEIKLFNRRDEFFDKALAFAQRVNE---N-TDCVVTVTDLADQQAFAEA   87 (182)
T ss_dssp             TCCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEECSSTTHHHHHHHHHHHHH---H-SSCEEEEEETTCHHHHHHH
T ss_pred             CCCcCCCEEEEECCcHHHHHHHHHHh-hcCCceEeeeccchHHHHHHHHHHHHHHh---h-cCcceEeeecccccchhhh
Confidence            35789999999999999999998874 5677 788899886532  1221111110   0 00111   11122346677


Q ss_pred             hhcCCEEEEcCCCCccc---ccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          234 LREADVISLHPVLDKTT---YHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       234 l~~aDiV~l~~pl~~~t---~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      +.++|+|+.|.|.....   ..++.  .++.++++.+++++.-.+.
T Consensus        88 ~~~~diiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~Y~p~  131 (182)
T d1vi2a1          88 LASADILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECVYNPH  131 (182)
T ss_dssp             HHTCSEEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECCCSSS
T ss_pred             hcccceeccccCCccccccchhhhh--HHHhhhcchhhHHhhcCcc
Confidence            88999999999975432   12221  2466889999999976554

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.44  E-value=8.4e-05  Score=60.88  Aligned_cols=97  Identities=16%  Similarity=0.150  Sum_probs=62.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCC-HHHHhhcCCEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASS-MDEVLREADVIS  241 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-l~~ll~~aDiV~  241 (342)
                      .|++|.|+|.|.+|...++. ++.+|++|++.|+++++....  ..+       +.... ......+ .+......|+++
T Consensus        27 ~g~~vlI~GaG~vG~~a~q~-ak~~G~~vi~~~~~~~k~~~a--~~l-------Ga~~~i~~~~~~~~~~~~~~~~d~vi   96 (168)
T d1piwa2          27 PGKKVGIVGLGGIGSMGTLI-SKAMGAETYVISRSSRKREDA--MKM-------GADHYIATLEEGDWGEKYFDTFDLIV   96 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHHTCEEEEEESSSTTHHHH--HHH-------TCSEEEEGGGTSCHHHHSCSCEEEEE
T ss_pred             CCCEEEEECCCCcchhHHHH-hhhccccccccccchhHHHHh--hcc-------CCcEEeeccchHHHHHhhhcccceEE
Confidence            48899999999999999998 589999999999987643221  111       11110 0111112 334456689998


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|......   ..-...++.++++..++.++-
T Consensus        97 ~~~~~~~~---~~~~~~~~~l~~~G~iv~~G~  125 (168)
T d1piwa2          97 VCASSLTD---IDFNIMPKAMKVGGRIVSISI  125 (168)
T ss_dssp             ECCSCSTT---CCTTTGGGGEEEEEEEEECCC
T ss_pred             EEecCCcc---chHHHHHHHhhccceEEEecc
Confidence            88764221   112346778888888888864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.0004  Score=56.67  Aligned_cols=96  Identities=19%  Similarity=0.161  Sum_probs=63.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh--------
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--------  234 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll--------  234 (342)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|+++++....  ..+       +..........+..+..        
T Consensus        26 ~gd~VlI~G~G~iG~~~~~~a-~~~G~~~Vi~~d~~~~rl~~a--~~~-------Ga~~~~~~~~~~~~~~~~~~~~~~g   95 (171)
T d1pl8a2          26 LGHKVLVCGAGPIGMVTLLVA-KAMGAAQVVVTDLSATRLSKA--KEI-------GADLVLQISKESPQEIARKVEGQLG   95 (171)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEEESCHHHHHHH--HHT-------TCSEEEECSSCCHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCccHHHHHHHH-HHcCCceEEeccCCHHHHHHH--HHh-------CCcccccccccccccccccccccCC
Confidence            377999999999999999985 89999 799999987654221  111       21111111123333322        


Q ss_pred             hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          235 READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       235 ~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      ...|+++-|.+. +.    .-+..++.+++|..++.++-.
T Consensus        96 ~g~Dvvid~~G~-~~----~~~~a~~~~~~gG~iv~~G~~  130 (171)
T d1pl8a2          96 CKPEVTIECTGA-EA----SIQAGIYATRSGGTLVLVGLG  130 (171)
T ss_dssp             SCCSEEEECSCC-HH----HHHHHHHHSCTTCEEEECSCC
T ss_pred             CCceEEEeccCC-ch----hHHHHHHHhcCCCEEEEEecC
Confidence            257999999873 22    224568889999999988753

>d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Ornithine cyclodeaminase-like
domain: Archaeal alanine dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.36  E-value=0.00035  Score=63.36  Aligned_cols=93  Identities=16%  Similarity=0.232  Sum_probs=67.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      -+++||+|.|..++.-++.++..+.. +|.+|+++++. .+.+....    ...+     .....+.++.+.+||+|+.|
T Consensus       125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~-~~~~~~~~----~~~~-----~~~~~~~~~a~~~aDiV~ta  194 (320)
T d1omoa_         125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKA-AKKFVSYC----EDRG-----ISASVQPAEEASRCDVLVTT  194 (320)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHH-HHHHHHHH----HHTT-----CCEEECCHHHHTSSSEEEEC
T ss_pred             ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHH-HHHHHHHH----HhcC-----CccccchhhhhccccEEEEe
Confidence            35899999999999999987656776 79999998754 33333322    1111     11234567788999999998


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      .|   .+.-+|..+   .+|+|+.+..+|-
T Consensus       195 T~---s~~P~~~~~---~l~~G~hv~~iGs  218 (320)
T d1omoa_         195 TP---SRKPVVKAE---WVEEGTHINAIGA  218 (320)
T ss_dssp             CC---CSSCCBCGG---GCCTTCEEEECSC
T ss_pred             cc---Ccccccchh---hcCCCCeEeecCC
Confidence            76   556677764   5899999999974

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.32  E-value=0.00068  Score=56.45  Aligned_cols=83  Identities=14%  Similarity=0.188  Sum_probs=54.3

Q ss_pred             ccccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          160 GNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       160 ~~~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      +.+|.||++.|.| -|.||+.+|+.| ...|++|+..+++.+.. +...+.+..-... ...........++++++.+.|
T Consensus        18 ~~~l~gK~vlItGasgGIG~~ia~~l-a~~G~~V~~~~r~~~~~-~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~iD   94 (191)
T d1luaa1          18 GGSVKGKKAVVLAGTGPVGMRSAALL-AGEGAEVVLCGRKLDKA-QAAADSVNKRFKV-NVTAAETADDASRAEAVKGAH   94 (191)
T ss_dssp             TSCCTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSHHHH-HHHHHHHHHHHTC-CCEEEECCSHHHHHHHTTTCS
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHH-HhhccchhhcccchHHH-HHHHHHHHhccch-hhhhhhcccHHHHHHHhcCcC
Confidence            4689999999999 799999999998 47899999999987542 2221211110000 001111122346677888899


Q ss_pred             EEEEcCC
Q 019387          239 VISLHPV  245 (342)
Q Consensus       239 iV~l~~p  245 (342)
                      +|+.+.+
T Consensus        95 ilin~Ag  101 (191)
T d1luaa1          95 FVFTAGA  101 (191)
T ss_dssp             EEEECCC
T ss_pred             eeeecCc
Confidence            8887754

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=97.30  E-value=0.00028  Score=58.25  Aligned_cols=37  Identities=24%  Similarity=0.266  Sum_probs=33.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~  201 (342)
                      .|.+|.|+|.|.||...++. ++.+|+ +|++.|++++.
T Consensus        28 ~G~~VlV~GaG~iG~~~~~~-ak~~Ga~~Vi~~~~~~~~   65 (182)
T d1vj0a2          28 AGKTVVIQGAGPLGLFGVVI-ARSLGAENVIVIAGSPNR   65 (182)
T ss_dssp             BTCEEEEECCSHHHHHHHHH-HHHTTBSEEEEEESCHHH
T ss_pred             CCCEEEEECCCccchhheec-cccccccccccccccccc
Confidence            58999999999999999998 589998 89999998764

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=97.22  E-value=0.00018  Score=58.34  Aligned_cols=98  Identities=8%  Similarity=0.082  Sum_probs=60.4

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|+|.|+|.|.||+.+|+.|+ .-|.+|+++|++.+.. +.+...+.....    ..........+++.+...|+++.+
T Consensus         1 ~~K~IliiGaG~~G~~~a~~L~-~~g~~V~v~dr~~~~a-~~l~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~i~~   74 (182)
T d1e5qa1           1 ATKSVLMLGSGFVTRPTLDVLT-DSGIKVTVACRTLESA-KKLSAGVQHSTP----ISLDVNDDAALDAEVAKHDLVISL   74 (182)
T ss_dssp             CCCEEEEECCSTTHHHHHHHHH-TTTCEEEEEESCHHHH-HHHHTTCTTEEE----EECCTTCHHHHHHHHTTSSEEEEC
T ss_pred             CCCEEEEECCCHHHHHHHHHHH-hCCCEEEEEECChHHH-HHHHhccccccc----ccccccchhhhHhhhhccceeEee
Confidence            3789999999999999999985 5689999999998642 222221110000    000111223566778899999988


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .|....  ..+   .....+.+..+++.+
T Consensus        75 ~~~~~~--~~~---~~~~~~~~~~~~~~~   98 (182)
T d1e5qa1          75 IPYTFH--ATV---IKSAIRQKKHVVTTS   98 (182)
T ss_dssp             SCGGGH--HHH---HHHHHHHTCEEECSS
T ss_pred             ccchhh--hHH---HHHHHhhccceeecc
Confidence            874322  111   223334566777765

>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.18  E-value=0.0049  Score=53.21  Aligned_cols=117  Identities=25%  Similarity=0.356  Sum_probs=74.9

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEc-CCch---------hHHHHHHhhhhhhhhccCCCCccccccCCHH
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD-LYQA---------TRLEKFVTAYGQFLKANGEQPVTWKRASSMD  231 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d-~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  231 (342)
                      +|.|+||.|-|+|++|+.+|+.|++.+|++|++.. .+..         ..+.++....+.   .....  +. ...+.+
T Consensus        29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~---~~~~~--~~-~~~~~~  102 (239)
T d1gtma1          29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGS---VKDFP--GA-TNITNE  102 (239)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSS---STTCT--TS-EEECHH
T ss_pred             CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccc---cccCC--CC-eeeccc
Confidence            48999999999999999999987567899998754 3210         111111111100   00000  11 112345


Q ss_pred             HHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          232 EVL-READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       232 ~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +++ ..||+++-|.-     .+.|+.+....++- .+++-.+-+++- .++ .+.|.+..|.
T Consensus       103 ~i~~~~~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~t-~ea-~~~L~~rgI~  156 (239)
T d1gtma1         103 ELLELEVDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPVT-PEA-DEILFEKGIL  156 (239)
T ss_dssp             HHHHSCCSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCBC-HHH-HHHHHHTTCE
T ss_pred             ccccccccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCCC-HHH-HHHHHHCCCE
Confidence            544 57999998864     58888888888875 478888899974 455 4677766554

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.18  E-value=0.00033  Score=54.82  Aligned_cols=92  Identities=11%  Similarity=0.203  Sum_probs=58.4

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcc--ccccCCHHHH-hhcCCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVT--WKRASSMDEV-LREADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~l-l~~aDiV~l~  243 (342)
                      +|.|+|+|++|+.+|+.| ...|.+|++.|..++.. +...+.+       +.....  ......|+++ +.++|.++.+
T Consensus         2 ~IvI~G~G~~G~~la~~L-~~~g~~v~vid~d~~~~-~~~~~~~-------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~   72 (132)
T d1lssa_           2 YIIIAGIGRVGYTLAKSL-SEKGHDIVLIDIDKDIC-KKASAEI-------DALVINGDCTKIKTLEDAGIEDADMYIAV   72 (132)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHH-HHHHHHC-------SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHH-HHCCCCcceecCChhhh-hhhhhhh-------hhhhccCcccchhhhhhcChhhhhhhccc
Confidence            689999999999999998 68899999999987532 2221111       110000  0011233443 6789999988


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEE
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILV  269 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lI  269 (342)
                      .+..  ..+++-....+.+.+..+++
T Consensus        73 t~~d--~~N~~~~~~~k~~~~~~iI~   96 (132)
T d1lssa_          73 TGKE--EVNLMSSLLAKSYGINKTIA   96 (132)
T ss_dssp             CSCH--HHHHHHHHHHHHTTCCCEEE
T ss_pred             CCcH--HHHHHHHHHHHHcCCceEEE
Confidence            7753  33455555666677665554

>d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.17  E-value=0.0017  Score=57.68  Aligned_cols=143  Identities=15%  Similarity=0.151  Sum_probs=86.7

Q ss_pred             hhHHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc-
Q 019387          121 ETTAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ-  199 (342)
Q Consensus       121 ~~vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~-  199 (342)
                      ++++--++..+-.++++.....   +.|          ...+|.|+||.|-|+|++|+.+|+.| ...|++|++++.+. 
T Consensus         5 eATG~GV~~~~~~~l~~~~~~~---~~g----------l~~~L~gktvaIqGfGnVG~~~A~~L-~e~Gakvv~vsD~~G   70 (293)
T d1hwxa1           5 SATGRGVFHGIENFIENASYMS---ILG----------MTPGFGDKTFAVQGFGNVGLHSMRYL-HRFGAKCVAVGESDG   70 (293)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHH---HHT----------CCSSSTTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEEETTE
T ss_pred             hHhHHHHHHHHHHHHHhcccch---hcc----------CCCCCCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEEccch
Confidence            4566666666666665442111   011          23479999999999999999999998 68999998765321 


Q ss_pred             ---------hhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEE
Q 019387          200 ---------ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-READVISLHPVLDKTTYHLINKERLATMKKEAILV  269 (342)
Q Consensus       200 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lI  269 (342)
                               ...+..+....+..      ....... .+-++++ ..||+++-|.     +.+.|+.+....++-. +++
T Consensus        71 ~i~~~~Gld~~~L~~~~~~~~~~------~~~~~~~-~~~~~~~~~~~DIliPaA-----~~~~I~~~~a~~l~ak-~I~  137 (293)
T d1hwxa1          71 SIWNPDGIDPKELEDFKLQHGTI------LGFPKAK-IYEGSILEVDCDILIPAA-----SEKQLTKSNAPRVKAK-IIA  137 (293)
T ss_dssp             EECCTTCCCHHHHHHHHHTTSSS------TTCTTSC-BCCSCGGGCCCSEEEECS-----SSSCBCTTTGGGCCCS-EEE
T ss_pred             hhccccccchHHHHHHHHHcCCe------ecccccc-cCCcccccCCccEEeecc-----ccccccHHHHHHHhhC-EEe
Confidence                     11222222111110      0000000 1112333 4799999774     4588888888888754 888


Q ss_pred             EcCCCcccCHHHHHHHHHcCCce
Q 019387          270 NCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       270 NvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      --+-|++ ..+| .+.|.+..|.
T Consensus       138 EgAN~P~-t~eA-~~~L~~~gI~  158 (293)
T d1hwxa1         138 EGANGPT-TPQA-DKIFLERNIM  158 (293)
T ss_dssp             CCSSSCB-CHHH-HHHHHHTTCE
T ss_pred             ccCCCCC-Ccch-HHHHHHCCCE
Confidence            8899996 4555 4667666654

>d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Toxoplasma gondii [TaxId: 5811]

Probab=97.17  E-value=0.0018  Score=52.16  Aligned_cols=107  Identities=16%  Similarity=0.234  Sum_probs=61.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .++|+|||.|++|+.+|..|+ ..+ .+++.+|..+... +.......+...... ...........++.+++||+|+++
T Consensus         7 ~~KI~IIGaG~VG~~lA~~l~-~~~~~el~L~D~~~~~~-~g~a~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~adiVvit   83 (154)
T d1pzga1           7 RKKVAMIGSGMIGGTMGYLCA-LRELADVVLYDVVKGMP-EGKALDLSHVTSVVD-TNVSVRAEYSYEAALTGADCVIVT   83 (154)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-HHTCCEEEEECSSSSHH-HHHHHHHHHHHHHTT-CCCCEEEECSHHHHHTTCSEEEEC
T ss_pred             CCcEEEECCCHHHHHHHHHHH-hCCCceEEEEEeccccc-hhHHHHHhhhccccC-CeeEEeccCchhhhhcCCCeEEEe
Confidence            578999999999999997763 333 3899999876432 111111000000001 111122235667888999999998


Q ss_pred             CCCCc--------ccccc-c--C-------HHHHhcCCCCcEEEEcCCC
Q 019387          244 PVLDK--------TTYHL-I--N-------KERLATMKKEAILVNCSRG  274 (342)
Q Consensus       244 ~pl~~--------~t~~l-i--~-------~~~l~~mk~ga~lINvaRG  274 (342)
                      .....        .++.- +  |       .+.+....|.+++++++--
T Consensus        84 ag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNP  132 (154)
T d1pzga1          84 AGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNP  132 (154)
T ss_dssp             CSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSS
T ss_pred             cccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            74311        13211 1  1       1234555688999998653

>d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Diaminopimelic acid dehydrogenase (DAPDH)
species: Corynebacterium glutamicum [TaxId: 1718]

Probab=97.16  E-value=0.00055  Score=56.03  Aligned_cols=83  Identities=16%  Similarity=0.229  Sum_probs=54.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~af-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      -+|||+|+|+||+..++.+ +.. +++++ ++|++.+..                 .........++++++.+.|+|++|
T Consensus         4 irvgiiG~G~ig~~~~~~l-~~~~~~elvav~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~D~Vvi~   65 (170)
T d1f06a1           4 IRVAIVGYGNLGRSVEKLI-AKQPDMDLVGIFSRRATLD-----------------TKTPVFDVADVDKHADDVDVLFLC   65 (170)
T ss_dssp             EEEEEECCSHHHHHHHHHH-TTCSSEEEEEEEESSSCCS-----------------SSSCEEEGGGGGGTTTTCSEEEEC
T ss_pred             ceEEEECChHHHHHHHHHH-HhCCCcEEEEEEecccccc-----------------cccccccchhhhhhccccceEEEe
Confidence            3799999999999999997 554 78877 466654321                 111223345777788899999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEc
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNC  271 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINv  271 (342)
                      +|...+  .   +-....++.|.-+|.+
T Consensus        66 tp~~~h--~---~~a~~aL~aG~~vv~~   88 (170)
T d1f06a1          66 MGSATD--I---PEQAPKFAQFACTVDT   88 (170)
T ss_dssp             SCTTTH--H---HHHHHHHTTTSEEECC
T ss_pred             CCCccc--H---HHHHHHHHCCCcEEEe
Confidence            995432  2   2233445566655543

>d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.15  E-value=0.00081  Score=53.94  Aligned_cols=106  Identities=20%  Similarity=0.307  Sum_probs=59.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .+++|+|||.|.+|+.+|..|+. ++.-++..||..+... +.......+ ........... ...+ .+.+++||+|++
T Consensus         5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~-~g~a~Dl~~-~~~~~~~~~~~-~~~d-~~~l~daDvvvi   80 (148)
T d1ldna1           5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKA-IGDAMDFNH-GKVFAPKPVDI-WHGD-YDDCRDADLVVI   80 (148)
T ss_dssp             TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH-HHHHHHHHH-HTTSSSSCCEE-EECC-GGGTTTCSEEEE
T ss_pred             CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccc-cchhccHhh-CccccCCCeEE-EECC-HHHhccceeEEE
Confidence            47799999999999999987642 4555899999876532 111111100 00000111111 1223 356789999998


Q ss_pred             cCCCCcc---cc-ccc--C-------HHHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDKT---TY-HLI--N-------KERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~~---t~-~li--~-------~~~l~~mk~ga~lINvaR  273 (342)
                      +......   ++ .++  |       .+.+.+..|.+++|+++-
T Consensus        81 tag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtN  124 (148)
T d1ldna1          81 CAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATN  124 (148)
T ss_dssp             CCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSS
T ss_pred             ecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecC
Confidence            7543221   11 111  1       123445557889999854

>d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Virulence factor MviM
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00069  Score=54.87  Aligned_cols=106  Identities=16%  Similarity=0.211  Sum_probs=61.8

Q ss_pred             eEEEEecCHHHHH-HHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          167 TVGVIGAGRIGSA-YARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvgIvG~G~IG~~-vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      +|||||+|.+|+. .+..+.+.-++++. ++|++++.. ..+...|            +....+++++++++.|+|++|+
T Consensus         3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~-~~~~~~~------------~~~~~~~~~~l~~~~D~V~I~t   69 (164)
T d1tlta1           3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKA-LPICESW------------RIPYADSLSSLAASCDAVFVHS   69 (164)
T ss_dssp             EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTH-HHHHHHH------------TCCBCSSHHHHHTTCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhh-hhhhhcc------------cccccccchhhhhhcccccccc
Confidence            7999999999987 45665323378876 578876542 2222222            1224578999999999999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEc--CCCcccCHHHHHHHHHcCC
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNC--SRGPVIDEVALVEHLKQNP  290 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINv--aRG~~vd~~aL~~aL~~g~  290 (342)
                      |.  .++.-+-...++.=|  .+++.-  +. .+-+.+.|.++.++.+
T Consensus        70 p~--~~h~~~~~~al~~gk--~V~~EKPla~-~~~e~~~l~~~a~~~~  112 (164)
T d1tlta1          70 ST--ASHFDVVSTLLNAGV--HVCVDKPLAE-NLRDAERLVELAARKK  112 (164)
T ss_dssp             CT--THHHHHHHHHHHTTC--EEEEESSSCS-SHHHHHHHHHHHHHTT
T ss_pred             cc--hhccccccccccccc--eeeccccccC-CHHHHHHHHHHHHHcC
Confidence            84  333323233333211  355442  21 1234455556555443

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.14  E-value=0.00042  Score=57.49  Aligned_cols=80  Identities=14%  Similarity=0.106  Sum_probs=46.6

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhc-cCCC---CccccccCCHHHHhhcCCEEE
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKA-NGEQ---PVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~-d~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +|||.|||+||+.++|.+...=+++|+++ |+.+..........+...... +...   .........+.+++.++|+|+
T Consensus         3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi   82 (178)
T d1b7go1           3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV   82 (178)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence            79999999999999999754446888875 555433222211111000000 0000   001112346788888999999


Q ss_pred             EcCCC
Q 019387          242 LHPVL  246 (342)
Q Consensus       242 l~~pl  246 (342)
                      -|.|.
T Consensus        83 ecTG~   87 (178)
T d1b7go1          83 DTTPN   87 (178)
T ss_dssp             ECCST
T ss_pred             ECCCC
Confidence            99984

>d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.13  E-value=0.0003  Score=58.06  Aligned_cols=120  Identities=15%  Similarity=0.158  Sum_probs=73.0

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .++.||+|.|+|.|..+++++..| ...| +|++++|+.++. +.....+......   .........+++..+..+|++
T Consensus        14 ~~~~~k~vlIlGaGG~arai~~aL-~~~~-~i~I~nR~~~ka-~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~dli   87 (177)
T d1nvta1          14 GRVKDKNIVIYGAGGAARAVAFEL-AKDN-NIIIANRTVEKA-EALAKEIAEKLNK---KFGEEVKFSGLDVDLDGVDII   87 (177)
T ss_dssp             CCCCSCEEEEECCSHHHHHHHHHH-TSSS-EEEEECSSHHHH-HHHHHHHHHHHTC---CHHHHEEEECTTCCCTTCCEE
T ss_pred             CCcCCCEEEEECCcHHHHHHHHHH-cccc-ceeeehhhhhHH-HHHHHHHHHhhch---hhhhhhhhhhhhhccchhhhh
Confidence            468999999999999999999887 5677 999999987542 2222222110000   000011224556667889999


Q ss_pred             EEcCCCCcccc-cccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHc
Q 019387          241 SLHPVLDKTTY-HLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQ  288 (342)
Q Consensus       241 ~l~~pl~~~t~-~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~  288 (342)
                      +.|.|...... ..-....+..++++.+++++.-.+..  ..|.++.++
T Consensus        88 In~tp~g~~~~~~~~~~~~~~~~~~~~~v~D~~y~p~~--T~l~~~a~~  134 (177)
T d1nvta1          88 INATPIGMYPNIDVEPIVKAEKLREDMVVMDLIYNPLE--TVLLKEAKK  134 (177)
T ss_dssp             EECSCTTCTTCCSSCCSSCSTTCCSSSEEEECCCSSSS--CHHHHHHHT
T ss_pred             ccCCcccccccccccchhhhhccCcccceeeecCCcHh--HHHHHHHHH
Confidence            99998643211 11111224566788999998765543  334444443

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.0003  Score=53.84  Aligned_cols=39  Identities=21%  Similarity=0.326  Sum_probs=34.3

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ...+.+|||+|-|-.|+.+|.. ++.+|.+++++|+++..
T Consensus         8 ~~~~~kigIlGgGQL~rMla~a-A~~lG~~v~v~d~~~~~   46 (111)
T d1kjqa2           8 RPAATRVMLLGSGELGKEVAIE-CQRLGVEVIAVDRYADA   46 (111)
T ss_dssp             STTCCEEEEESCSHHHHHHHHH-HHTTTCEEEEEESSTTC
T ss_pred             CCCCCEEEEEeCCHHHHHHHHH-HHHCCCEEEEEcCCCCC
Confidence            3456789999999999999998 58999999999998764

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=97.09  E-value=0.00065  Score=55.13  Aligned_cols=97  Identities=14%  Similarity=0.071  Sum_probs=62.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-ccc-ccCCHHH---Hh----
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWK-RASSMDE---VL----  234 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~---ll----  234 (342)
                      .|.+|.|+|.|.||...++.+ +.+|++|+++|+++.+....  ..+       +.... ... ...+.++   .+    
T Consensus        26 ~g~~vlV~G~G~vG~~~~~~a-k~~Ga~vi~v~~~~~r~~~a--~~~-------ga~~~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          26 LGTTVLVIGAGPIGLVSVLAA-KAYGAFVVCTARSPRRLEVA--KNC-------GADVTLVVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHH--HHT-------TCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCCEEEEEcccccchhhHhhH-hhhcccccccchHHHHHHHH--HHc-------CCcEEEeccccccccchhhhhhhccc
Confidence            477999999999999999985 89999999999987653211  111       11100 000 1112222   22    


Q ss_pred             -hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          235 -READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       235 -~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                       ...|+|+-|... +.+    -...++.++++..++.++-.+
T Consensus        96 g~g~D~vid~~g~-~~~----~~~a~~~~~~~G~iv~~G~~~  132 (170)
T d1e3ja2          96 GDLPNVTIDCSGN-EKC----ITIGINITRTGGTLMLVGMGS  132 (170)
T ss_dssp             SSCCSEEEECSCC-HHH----HHHHHHHSCTTCEEEECSCCS
T ss_pred             ccCCceeeecCCC-hHH----HHHHHHHHhcCCceEEEecCC
Confidence             247999988763 221    244578889999999987543

>d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH
species: Lactobacillus confusus [TaxId: 1583]

Probab=97.08  E-value=0.0012  Score=52.83  Aligned_cols=105  Identities=18%  Similarity=0.203  Sum_probs=58.9

Q ss_pred             CeEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      |+|+|||.|.+|..+|-.|+ +++--++..||...... +.......+...... .+... ...+.+ .+++||+|+++.
T Consensus         2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~-~g~~~Dl~~a~~~~~-~~~~~-~~~d~~-~l~~adiVVita   77 (146)
T d1hyha1           2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKV-KADQIDFQDAMANLE-AHGNI-VINDWA-ALADADVVISTL   77 (146)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH-HHHHHHHHHHGGGSS-SCCEE-EESCGG-GGTTCSEEEECC
T ss_pred             CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchh-hhHHHhhhccccccC-Cccce-eccCHH-HhccccEEEEec
Confidence            78999999999999998654 24445899999876532 221111101001001 11111 123434 468999999986


Q ss_pred             CCCc-------cccc-cc--C-------HHHHhcCCCCcEEEEcCCC
Q 019387          245 VLDK-------TTYH-LI--N-------KERLATMKKEAILVNCSRG  274 (342)
Q Consensus       245 pl~~-------~t~~-li--~-------~~~l~~mk~ga~lINvaRG  274 (342)
                      ....       .++. ++  |       ...+....|++++|+++-.
T Consensus        78 G~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNP  124 (146)
T d1hyha1          78 GNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNP  124 (146)
T ss_dssp             SCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSS
T ss_pred             cccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCc
Confidence            5321       1221 11  1       1244556788999998753

>d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chlorobium vibrioforme [TaxId: 1098]

Probab=97.05  E-value=0.0014  Score=51.94  Aligned_cols=104  Identities=17%  Similarity=0.221  Sum_probs=57.3

Q ss_pred             eEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|+|||.|++|+.+|..|+. ++.-++..||..+........+.... ...... ...... .+..+.+++||+|+++.-
T Consensus         2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~-~~~~~~-~~~i~~-~~~~~~~~dadvvvitag   78 (142)
T d1guza1           2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYES-GPVGLF-DTKVTG-SNDYADTANSDIVIITAG   78 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTT-HHHHTC-CCEEEE-ESCGGGGTTCSEEEECCS
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcc-cchhcc-cceEEe-cCCHHHhcCCeEEEEEEe
Confidence            79999999999999988742 23348999998775321111111000 000011 111111 233456799999999853


Q ss_pred             --CCc-cccc--------ccC--HHHHhcCCCCcEEEEcCC
Q 019387          246 --LDK-TTYH--------LIN--KERLATMKKEAILVNCSR  273 (342)
Q Consensus       246 --l~~-~t~~--------li~--~~~l~~mk~ga~lINvaR  273 (342)
                        ..+ +++.        ++-  .+.+....|++++++++-
T Consensus        79 ~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1guza1          79 LPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN  119 (142)
T ss_dssp             CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred             cCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence              222 1211        110  123444557889999865

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.89  E-value=0.0017  Score=53.45  Aligned_cols=113  Identities=18%  Similarity=0.132  Sum_probs=64.7

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l~  243 (342)
                      ++||||+|.+|+..++.+...-+++|.+ +|+.++. .+.+...+       +. +.....+.+++++++  +.|+|+++
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~-~~~~~~~~-------~~-~~~~~~~~~~~~ll~~~~iD~v~I~   73 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEK-AKAFATAN-------NY-PESTKIHGSYESLLEDPEIDALYVP   73 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHH-HHHHHHHT-------TC-CTTCEEESSHHHHHHCTTCCEEEEC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccc-cccchhcc-------cc-ccceeecCcHHHhhhccccceeeec
Confidence            7999999999999998873333788884 6887643 22222222       11 111223578999984  47899999


Q ss_pred             CCCCcccccccCHHHHhcCCCCc-EEEEc-CCCcccCHHHHHHHHHcCCceE
Q 019387          244 PVLDKTTYHLINKERLATMKKEA-ILVNC-SRGPVIDEVALVEHLKQNPMFR  293 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga-~lINv-aRG~~vd~~aL~~aL~~g~i~~  293 (342)
                      .|..  ++.-+   ....++.|. +++-- .--.+-+-+.|.+..++.++..
T Consensus        74 tp~~--~h~~~---~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~  120 (184)
T d1ydwa1          74 LPTS--LHVEW---AIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQI  120 (184)
T ss_dssp             CCGG--GHHHH---HHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCE
T ss_pred             ccch--hhcch---hhhhhhccceeecccccccCHHHHHHHHHHHHhhCCEE
Confidence            8843  33222   333344453 33321 1112233455667776655543

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=96.89  E-value=0.00056  Score=56.20  Aligned_cols=117  Identities=11%  Similarity=0.061  Sum_probs=66.1

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..+.||+|.|+|.|..|++++..|. .-+.+|++++|+.+. .+...+.+...    ..    .......+..+.++|+|
T Consensus        14 ~~~~~k~vlIlGaGGaarai~~aL~-~~~~~i~I~nR~~~~-a~~l~~~~~~~----~~----~~~~~~~~~~~~~~dii   83 (171)
T d1p77a1          14 WLRPNQHVLILGAGGATKGVLLPLL-QAQQNIVLANRTFSK-TKELAERFQPY----GN----IQAVSMDSIPLQTYDLV   83 (171)
T ss_dssp             CCCTTCEEEEECCSHHHHTTHHHHH-HTTCEEEEEESSHHH-HHHHHHHHGGG----SC----EEEEEGGGCCCSCCSEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHc-ccCceeeeccchHHH-HHHHHHHHhhc----cc----cchhhhcccccccccee
Confidence            4678999999999999999999874 556899999998753 33333322110    10    00011112235789999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      +.|.|..-...  .....+..++++..++++.=.....+.-|..|=+.|
T Consensus        84 IN~tp~g~~~~--~~~~~~~~~~~~~~~~D~vy~~p~~T~~l~~A~~~g  130 (171)
T d1p77a1          84 INATSAGLSGG--TASVDAEILKLGSAFYDMQYAKGTDTPFIALCKSLG  130 (171)
T ss_dssp             EECCCC---------CCCHHHHHHCSCEEESCCCTTSCCHHHHHHHHTT
T ss_pred             eeccccccccc--ccchhhhhhcccceeeeeeccCcccHHHHHHHHHcC
Confidence            99999753211  111122334456666666544434444444444444

>d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: GDP-mannose 6-dehydrogenase, GDP-binding domain
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.88  E-value=0.0014  Score=51.56  Aligned_cols=101  Identities=20%  Similarity=0.161  Sum_probs=65.2

Q ss_pred             ccCCCeEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHH-HHHHhhhhhhhhccCCCCccccccCCH
Q 019387          162 LLKGQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRL-EKFVTAYGQFLKANGEQPVTWKRASSM  230 (342)
Q Consensus       162 ~L~gktvgIvG~----------G~IG~~vA~~l~~afg~~V~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l  230 (342)
                      .+.+++|||+|+          +.-...+++.| ...|++|.+|||..+... ......+   . .............++
T Consensus        10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L-~~~g~~V~~~DP~v~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~   84 (136)
T d1mv8a3          10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEML-IGKGYELRIFDRNVEYARVHGANKEY---I-ESKIPHVSSLLVSDL   84 (136)
T ss_dssp             TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHH-HHTTCEEEEECHHHHHHTTSSSCHHH---H-HHTSHHHHTTBCSCH
T ss_pred             hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHH-hhhhccccccCCCCCHHHHhhhhhhh---h-hhccccccceeehhh
Confidence            356889999998          56778899987 688999999998754210 0000000   0 000001112235799


Q ss_pred             HHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          231 DEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       231 ~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      ++++..||+|+++.+- ++-     .+....++++.+++++ ||
T Consensus        85 ~e~i~~~D~ivi~t~h-~~f-----~~l~~~~~~~~~I~D~-~~  121 (136)
T d1mv8a3          85 DEVVASSDVLVLGNGD-ELF-----VDLVNKTPSGKKLVDL-VG  121 (136)
T ss_dssp             HHHHHHCSEEEECSCC-GGG-----HHHHHSCCTTCEEEES-SS
T ss_pred             hhhhhhceEEEEEeCC-HHH-----HHHHHHhcCCCEEEEC-CC
Confidence            9999999999999873 221     2345567778899997 54

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=96.86  E-value=0.0009  Score=54.98  Aligned_cols=93  Identities=17%  Similarity=0.217  Sum_probs=56.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHH-Hhh-----
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDE-VLR-----  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~-ll~-----  235 (342)
                      .|.+|.|+|.|.||...++. ++.+|+ +|++.|+++++....  ..+       +.... ... ..++.+ +.+     
T Consensus        27 ~g~~VlI~GaG~vGl~~~q~-ak~~Ga~~Vi~~d~~~~r~~~a--~~l-------Ga~~~i~~~-~~~~~~~v~~~t~g~   95 (174)
T d1jqba2          27 MGSSVVVIGIGAVGLMGIAG-AKLRGAGRIIGVGSRPICVEAA--KFY-------GATDILNYK-NGHIEDQVMKLTNGK   95 (174)
T ss_dssp             TTCCEEEECCSHHHHHHHHH-HHTTTCSCEEEECCCHHHHHHH--HHH-------TCSEEECGG-GSCHHHHHHHHTTTS
T ss_pred             CCCEEEEEcCCcchhhhhhh-hhcccccccccccchhhhHHHH--Hhh-------Ccccccccc-chhHHHHHHHHhhcc
Confidence            48899999999999999998 489998 799999887543211  111       11110 111 122222 222     


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      ..|+|+-|++.. +   .+ ...+..++++..++-++
T Consensus        96 G~D~vid~~g~~-~---~~-~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          96 GVDRVIMAGGGS-E---TL-SQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             CEEEEEECSSCT-T---HH-HHHHHHEEEEEEEEECC
T ss_pred             CcceEEEccCCH-H---HH-HHHHHHHhcCCEEEEEe
Confidence            268888777632 1   11 34456667777777765

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=96.82  E-value=0.00069  Score=55.07  Aligned_cols=95  Identities=19%  Similarity=0.296  Sum_probs=62.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .|++|.|+|.|.||...++. ++.+|+++++.+...+++.  +...+       +.... ...............|+++.
T Consensus        30 ~G~~VlI~GaG~vG~~a~ql-ak~~Ga~~i~~~~~~~~~~--~a~~l-------Gad~~i~~~~~~~~~~~~~~~D~vid   99 (168)
T d1uufa2          30 PGKKVGVVGIGGLGHMGIKL-AHAMGAHVVAFTTSEAKRE--AAKAL-------GADEVVNSRNADEMAAHLKSFDFILN   99 (168)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCEEEEEESSGGGHH--HHHHH-------TCSEEEETTCHHHHHTTTTCEEEEEE
T ss_pred             CCCEEEEeccchHHHHHHHH-hhcccccchhhccchhHHH--HHhcc-------CCcEEEECchhhHHHHhcCCCceeee
Confidence            48899999999999999998 5899999999998776431  11111       11110 00011112223456899999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      ++... .+    -...+..++++..++.++.
T Consensus       100 ~~g~~-~~----~~~~~~~l~~~G~iv~~G~  125 (168)
T d1uufa2         100 TVAAP-HN----LDDFTTLLKRDGTMTLVGA  125 (168)
T ss_dssp             CCSSC-CC----HHHHHTTEEEEEEEEECCC
T ss_pred             eeecc-hh----HHHHHHHHhcCCEEEEecc
Confidence            88642 21    2456788899999999875

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=96.82  E-value=0.0029  Score=50.18  Aligned_cols=104  Identities=18%  Similarity=0.284  Sum_probs=56.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhh-hhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAY-GQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      ++|+|||.|++|..+|-.|+..--.++..+|..++.......+.. ...... .  ........+.++ +++||+|+++.
T Consensus         2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~-~--~~~i~~~~d~~~-~~~advvvita   77 (142)
T d1uxja1           2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEG-F--DVRVTGTNNYAD-TANSDVIVVTS   77 (142)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHT-C--CCCEEEESCGGG-GTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccC-C--CCEEEecCcHHH-hcCCCEEEEee
Confidence            589999999999999987653212489999987754222211110 000010 0  111222244554 58899999987


Q ss_pred             CC--Cc-ccc-ccc--CH-------HHHhcCCCCcEEEEcCC
Q 019387          245 VL--DK-TTY-HLI--NK-------ERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 pl--~~-~t~-~li--~~-------~~l~~mk~ga~lINvaR  273 (342)
                      ..  .+ +++ .++  |.       +.+.+-.|.+++++++-
T Consensus        78 g~~~~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtN  119 (142)
T d1uxja1          78 GAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNN  119 (142)
T ss_dssp             SCC---------CHHHHHHHHHHHHHHHGGGCTTCEEEECSS
T ss_pred             eccCCcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCC
Confidence            43  21 222 222  11       23444566888888765

>d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.78  E-value=0.0037  Score=49.38  Aligned_cols=101  Identities=15%  Similarity=0.249  Sum_probs=58.4

Q ss_pred             eEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|+|||.|++|..+|..++ +++.-++..+|..+........+.. . ..... ..... ...+ .+.+++||+|+++.-
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~-~-~~~~~-~~~~~-~~~~-~~~~~~adivvitag   76 (140)
T d1a5za1           2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLI-H-GTPFT-RRANI-YAGD-YADLKGSDVVIVAAG   76 (140)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHH-H-HGGGS-CCCEE-EECC-GGGGTTCSEEEECCC
T ss_pred             EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhcccc-c-ccccc-ccccc-cCCc-HHHhcCCCEEEEecc
Confidence            7999999999999997654 4566699999988643211111110 0 00000 01111 1223 345789999999853


Q ss_pred             CCcccccccC--------------HHHHhcCCCCcEEEEcCC
Q 019387          246 LDKTTYHLIN--------------KERLATMKKEAILVNCSR  273 (342)
Q Consensus       246 l~~~t~~li~--------------~~~l~~mk~ga~lINvaR  273 (342)
                      . +...+.-.              .+.+....|++++++++-
T Consensus        77 ~-~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtN  117 (140)
T d1a5za1          77 V-PQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTN  117 (140)
T ss_dssp             C-CCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSS
T ss_pred             c-ccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCC
Confidence            2 22222221              134555668899999874

>d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Acetaldehyde dehydrogenase (acylating)
species: Pseudomonas sp. [TaxId: 306]

Probab=96.75  E-value=0.0014  Score=52.97  Aligned_cols=93  Identities=15%  Similarity=0.215  Sum_probs=56.4

Q ss_pred             CeEEEEecCHHHHH-HHHHHHhcC-CcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-----hcC
Q 019387          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----REA  237 (342)
Q Consensus       166 ktvgIvG~G~IG~~-vA~~l~~af-g~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-----~~a  237 (342)
                      -++||||.|.||+. +.+.| +.+ ..++.+ .+++.+.....+-+.+       + .+.   ...++++++     .+.
T Consensus         5 irvaIIGaG~ig~~~~~~~l-~~~~~~el~avas~~~~~~~~~~a~~~-------~-i~~---~~~~~d~l~~~~~~~~i   72 (157)
T d1nvmb1           5 LKVAIIGSGNIGTDLMIKVL-RNAKYLEMGAMVGIDAASDGLARAQRM-------G-VTT---TYAGVEGLIKLPEFADI   72 (157)
T ss_dssp             EEEEEECCSHHHHHHHHHHH-HHCSSEEEEEEECSCTTCHHHHHHHHT-------T-CCE---ESSHHHHHHHSGGGGGE
T ss_pred             cEEEEEcCcHHHHHHHHHHH-hhCCcceEEEEEecchhccchhhhhhc-------C-Ccc---cccceeeeeeccccccc
Confidence            37999999999986 56775 555 456665 5776543322221111       1 111   123445443     468


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+|+.++|...   |.-.+..++..+.|.++|+-+-
T Consensus        73 DiVf~ATpag~---h~~~~~~~~aa~~G~~VID~s~  105 (157)
T d1nvmb1          73 DFVFDATSASA---HVQNEALLRQAKPGIRLIDLTP  105 (157)
T ss_dssp             EEEEECSCHHH---HHHHHHHHHHHCTTCEEEECST
T ss_pred             CEEEEcCCchh---HHHhHHHHHHHHcCCEEEEccc
Confidence            99999998422   2223445667899999999875

>d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Clostridium thermocellum [TaxId: 1515]

Probab=96.75  E-value=0.0018  Score=51.39  Aligned_cols=104  Identities=15%  Similarity=0.217  Sum_probs=55.0

Q ss_pred             CeEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      ++|+|||.|++|..+|-.++ +++.-++..||...+.......+     +...............-.+.+++||+|+++.
T Consensus         2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~D-----l~~~~~~~~~~~~~~~~~~~~~~adivvita   76 (142)
T d1y6ja1           2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMD-----INHGLPFMGQMSLYAGDYSDVKDCDVIVVTA   76 (142)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHH-----HTTSCCCTTCEEEC--CGGGGTTCSEEEECC
T ss_pred             CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeee-----eccCcccCCCeeEeeCcHHHhCCCceEEEec
Confidence            47999999999999997654 34445899999877532111111     1110000000111122234578999999985


Q ss_pred             CCCc---ccc-cccC---------HHHHhcCCCCcEEEEcCCC
Q 019387          245 VLDK---TTY-HLIN---------KERLATMKKEAILVNCSRG  274 (342)
Q Consensus       245 pl~~---~t~-~li~---------~~~l~~mk~ga~lINvaRG  274 (342)
                      ....   +++ .++.         .+.+....|.+++|+++-.
T Consensus        77 g~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNP  119 (142)
T d1y6ja1          77 GANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNP  119 (142)
T ss_dssp             CC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSS
T ss_pred             ccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecCh
Confidence            4222   121 1111         1234555678899998763

>d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Lactobacillus pentosus [TaxId: 1589]

Probab=96.70  E-value=0.0021  Score=51.27  Aligned_cols=104  Identities=14%  Similarity=0.234  Sum_probs=58.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      ..++|+|||.|.+|..+|..|+. ++.-++..||+..... +........-.....  +. .....+.++ +++||+|++
T Consensus         4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~-~g~a~Dl~~a~~~~~--~~-~~~~~d~~~-~~~adivvi   78 (146)
T d1ez4a1           4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRT-KGDALDLEDAQAFTA--PK-KIYSGEYSD-CKDADLVVI   78 (146)
T ss_dssp             TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHH-HHHHHHHHGGGGGSC--CC-EEEECCGGG-GTTCSEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchh-HHHHHHHhccccccC--Cc-eEeeccHHH-hccccEEEE
Confidence            35699999999999999988752 3446999999876432 111111100000011  11 112235554 589999999


Q ss_pred             cCCCCccccc------------ccC--HHHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDKTTYH------------LIN--KERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~~t~~------------li~--~~~l~~mk~ga~lINvaR  273 (342)
                      +... +...+            ++.  .+.+..-.|.+++|+++-
T Consensus        79 tag~-~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtN  122 (146)
T d1ez4a1          79 TAGA-PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAAN  122 (146)
T ss_dssp             CCCC-----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSS
T ss_pred             eccc-ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCC
Confidence            8643 22211            111  123455667888998874

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=96.68  E-value=0.0022  Score=51.84  Aligned_cols=109  Identities=15%  Similarity=0.192  Sum_probs=62.5

Q ss_pred             eEEEEecCHHHHH-HHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-cCCEEEEcC
Q 019387          167 TVGVIGAGRIGSA-YARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISLHP  244 (342)
Q Consensus       167 tvgIvG~G~IG~~-vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~aDiV~l~~  244 (342)
                      +|||||+|.+|+. ....+.+.-+.++.++|+.++.. +.+.+.+       +..    ..+.+.++++. +.|+|++|.
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~-~~~~~~~-------~~~----~~~~~~~~ll~~~iD~V~I~t   70 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVL-GTLATRY-------RVS----ATCTDYRDVLQYGVDAVMIHA   70 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHH-HHHHHHT-------TCC----CCCSSTTGGGGGCCSEEEECS
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHH-HHHHHhc-------ccc----cccccHHHhcccccceecccc
Confidence            7999999999976 56665333377888999876542 2322222       111    12356677765 569999999


Q ss_pred             CCCcccccccCHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCCc
Q 019387          245 VLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQNPM  291 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk~ga~lINva-RG~~vd~~aL~~aL~~g~i  291 (342)
                      |.  .++.-+-...++.=+  .+|+--= --.+-+.+.|.++.++.++
T Consensus        71 p~--~~H~~~~~~al~~gk--~V~~EKP~~~~~~e~~~l~~~a~~~~~  114 (167)
T d1xeaa1          71 AT--DVHSTLAAFFLHLGI--PTFVDKPLAASAQECENLYELAEKHHQ  114 (167)
T ss_dssp             CG--GGHHHHHHHHHHTTC--CEEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred             cc--ccccccccccccccc--ccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence            84  444333344444322  3555421 1122344667777655443

>d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Glutamate dehydrogenase
species: Clostridium symbiosum [TaxId: 1512]

Probab=96.67  E-value=0.0048  Score=53.77  Aligned_cols=120  Identities=15%  Similarity=0.183  Sum_probs=70.4

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEc--------CCch--hHHHHHHhhhh--------hhhhccCCCCc
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD--------LYQA--TRLEKFVTAYG--------QFLKANGEQPV  222 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d--------~~~~--~~~~~~~~~~~--------~~~~~~~~~~~  222 (342)
                      .+|.|+||.|-|+|++|+.+|+.| ...|++|++.+        +..-  ..+.++.....        .+....+.   
T Consensus        32 ~~l~g~~v~IQGfGnVG~~~a~~L-~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~---  107 (255)
T d1bgva1          32 DTLVGKTVALAGFGNVAWGAAKKL-AELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGV---  107 (255)
T ss_dssp             CCSTTCEEEECCSSHHHHHHHHHH-HHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTC---
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHH-HHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCc---
Confidence            468999999999999999999998 68899998643        2211  11111110000        00000000   


Q ss_pred             cccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCC-Cc-EEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKK-EA-ILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       223 ~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~-ga-~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      .....+++  +-..||+++-|     .+.+.|+.+....++. |+ +++--+-+++-++ +.-..|+++.|.
T Consensus       108 ~~~~~~~~--~~~~~DiliPc-----A~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e-a~~~ll~~~gI~  171 (255)
T d1bgva1         108 QFFPGEKP--WGQKVDIIMPC-----ATQNDVDLEQAKKIVANNVKYYIEVANMPTTNE-ALRFLMQQPNMV  171 (255)
T ss_dssp             EEEETCCG--GGSCCSEEECC-----SCTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH-HHHHHHHCTTCE
T ss_pred             eeechhhc--ccccccEEeec-----cccccccHHHHHhhhhcCceEEecCCCCCcchH-HHHHHHHhcCCE
Confidence            00001111  22479999866     4568889888888864 34 7777888886655 444446655554

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.65  E-value=0.00093  Score=47.62  Aligned_cols=35  Identities=20%  Similarity=0.297  Sum_probs=31.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      |||||+|-|-.|+.++.. ++.+|.+++++|+....
T Consensus         2 k~vgIlG~GQLgrMl~~A-a~~LG~~v~vldp~~~~   36 (78)
T d3etja2           2 KQVCVLGNGQLGRMLRQA-GEPLGIAVWPVGLDAEP   36 (78)
T ss_dssp             EEEEEEBCSHHHHHHHHH-HGGGTEEEEEECTTSCG
T ss_pred             CEEEEEcCCHHHHHHHHH-HHHcCCEEEEEcCCCCC
Confidence            699999999999999998 68999999999987653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.65  E-value=0.0012  Score=53.38  Aligned_cols=94  Identities=13%  Similarity=0.182  Sum_probs=58.0

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCH-HH---HhhcCCE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSM-DE---VLREADV  239 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~---ll~~aDi  239 (342)
                      .|++|.|+|.|.||...++.+ +.+|++|++.|+++++....  ..+       +....-.....+. ++   .....|.
T Consensus        27 ~g~~VlV~GaG~vG~~~~~~a-k~~G~~Vi~~~~~~~~~~~a--~~~-------Ga~~~i~~~~~~~~~~~~~~~~g~~~   96 (166)
T d1llua2          27 PGQWVAISGIGGLGHVAVQYA-RAMGLHVAAIDIDDAKLELA--RKL-------GASLTVNARQEDPVEAIQRDIGGAHG   96 (166)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESCHHHHHHH--HHT-------TCSEEEETTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEeeccccHHHHHHHH-HHcCCccceecchhhHHHhh--hcc-------CccccccccchhHHHHHHHhhcCCcc
Confidence            388999999999999999984 89999999999887543211  111       1111100011222 22   2233556


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      ++.+... +++   + ...++.+++|..++.++
T Consensus        97 ~i~~~~~-~~~---~-~~~~~~l~~~G~iv~~G  124 (166)
T d1llua2          97 VLVTAVS-NSA---F-GQAIGMARRGGTIALVG  124 (166)
T ss_dssp             EEECCSC-HHH---H-HHHHTTEEEEEEEEECC
T ss_pred             ccccccc-chH---H-HHHHHHhcCCcEEEEEE
Confidence            6666543 222   2 34678888898888876

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=96.62  E-value=0.0019  Score=53.01  Aligned_cols=80  Identities=18%  Similarity=0.204  Sum_probs=44.6

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhh--hhhhccCCC----CccccccCCHHHHhhcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYG--QFLKANGEQ----PVTWKRASSMDEVLREAD  238 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~-d~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~l~~ll~~aD  238 (342)
                      ++|||-|||+||+.+.|.+...=..+|.+. |+.+...... ...++  .........    ..+.....+..++++++|
T Consensus         2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vD   80 (171)
T d1cf2o1           2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARM-ALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEAD   80 (171)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHH-HHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCS
T ss_pred             eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHH-HHhcCCceEecccccceeecccCcccCCChhHhhcCCC
Confidence            589999999999999998744345787754 5444322111 11111  000000000    000111235677888999


Q ss_pred             EEEEcCCC
Q 019387          239 VISLHPVL  246 (342)
Q Consensus       239 iV~l~~pl  246 (342)
                      +|+-|.|.
T Consensus        81 vViEcTG~   88 (171)
T d1cf2o1          81 IVIDCTPE   88 (171)
T ss_dssp             EEEECCST
T ss_pred             EEEEccCC
Confidence            99999884

>d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD
species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]

Probab=96.58  E-value=0.0012  Score=57.20  Aligned_cols=68  Identities=16%  Similarity=0.168  Sum_probs=56.9

Q ss_pred             ccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          224 WKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       224 ~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      ....++..|++++||+|++|+|..+.+..++ ++....+++|++++|++.........+.+.|++..+.
T Consensus       129 v~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~  196 (242)
T d2b0ja2         129 LKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLN  196 (242)
T ss_dssp             CEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSE
T ss_pred             CEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCE
Confidence            3345789999999999999999776677777 6788899999999999998887778888888766555

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.50  E-value=0.0032  Score=51.64  Aligned_cols=80  Identities=20%  Similarity=0.187  Sum_probs=45.2

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhh--hhhhccCCC----CccccccCCHHHHhhcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYG--QFLKANGEQ----PVTWKRASSMDEVLREAD  238 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~~~~l~~ll~~aD  238 (342)
                      .+|||.|||+||+.++|.+...-.+++.+ .|+.+..... ....++  .........    ..+.....++.+++.++|
T Consensus         3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vD   81 (172)
T d2czca2           3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAY-RAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVD   81 (172)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHH-HHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCS
T ss_pred             EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCCChHHHH-HhhhcCceeecccccceeeecccCccccchhhhhhccCC
Confidence            48999999999999999874444678775 5555433211 111111  000000000    001112346777888899


Q ss_pred             EEEEcCCC
Q 019387          239 VISLHPVL  246 (342)
Q Consensus       239 iV~l~~pl  246 (342)
                      +|+-|.|.
T Consensus        82 vViEcTG~   89 (172)
T d2czca2          82 IIVDATPG   89 (172)
T ss_dssp             EEEECCST
T ss_pred             EEEECCCC
Confidence            99988874

>d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.50  E-value=0.0074  Score=49.08  Aligned_cols=110  Identities=15%  Similarity=0.188  Sum_probs=62.4

Q ss_pred             CeEEEEecCHHH--HHHHHHHH--hcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          166 QTVGVIGAGRIG--SAYARMMV--EGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvgIvG~G~IG--~~vA~~l~--~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+|.|||.|++|  ..++..++  +.|. .++..+|........+..+............+......++..+.+++||+|
T Consensus         2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV   81 (169)
T d1s6ya1           2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV   81 (169)
T ss_dssp             EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred             cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence            379999999776  44555442  1233 489999987653211111111000011111223333456788889999999


Q ss_pred             EEcCCCCc-----------ccccccC----------------------HHHHhcCCCCcEEEEcCCCc
Q 019387          241 SLHPVLDK-----------TTYHLIN----------------------KERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       241 ~l~~pl~~-----------~t~~li~----------------------~~~l~~mk~ga~lINvaRG~  275 (342)
                      +++.....           .+.|+..                      .+.+....|.++|+|++-.-
T Consensus        82 v~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPv  149 (169)
T d1s6ya1          82 TTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPA  149 (169)
T ss_dssp             EECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred             EEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChH
Confidence            99986432           1222221                      13455667899999997654

>d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=96.46  E-value=0.0069  Score=48.38  Aligned_cols=106  Identities=16%  Similarity=0.238  Sum_probs=57.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      ..+|+|||.|.+|+.+|..|+. .+ .++..||...........+ ..+...-... ...... .+-.+.+++||+|+++
T Consensus         3 ~~KI~IIGaG~VG~~~a~~l~~~~l-~el~L~Di~~~~~~g~a~D-l~~~~~~~~~-~~~v~~-~~~~~~~~~advvvit   78 (150)
T d1t2da1           3 KAKIVLVGSGMIGGVMATLIVQKNL-GDVVLFDIVKNMPHGKALD-TSHTNVMAYS-NCKVSG-SNTYDDLAGADVVIVT   78 (150)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTC-CEEEEECSSSSHHHHHHHH-HHTHHHHHTC-CCCEEE-ECCGGGGTTCSEEEEC
T ss_pred             CCeEEEECCCHHHHHHHHHHHhCCC-CeEEEEeccCCcceeeecc-hhhhccccCC-CcEEEe-cccccccCCCcEEEEe
Confidence            4589999999999999987643 33 3899999876432111111 0000000000 111111 2334556899999988


Q ss_pred             CCCCcc---c-----c-ccc--CH-------HHHhcCCCCcEEEEcCCC
Q 019387          244 PVLDKT---T-----Y-HLI--NK-------ERLATMKKEAILVNCSRG  274 (342)
Q Consensus       244 ~pl~~~---t-----~-~li--~~-------~~l~~mk~ga~lINvaRG  274 (342)
                      .-....   +     + .++  |.       +.+....|++++++++-.
T Consensus        79 ag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNP  127 (150)
T d1t2da1          79 AGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNP  127 (150)
T ss_dssp             CSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             cccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCc
Confidence            653221   1     1 111  11       224445588999998764

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.46  E-value=0.0014  Score=52.75  Aligned_cols=94  Identities=15%  Similarity=0.225  Sum_probs=58.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCC----HHHHhhcCCE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASS----MDEVLREADV  239 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----l~~ll~~aDi  239 (342)
                      .|++|.|.|.|.||...++. ++..|.+|++.+.++++..  +...+       +..........+    +.+...+.|.
T Consensus        27 ~g~~vlv~G~G~iG~~a~~~-a~~~g~~v~~~~~~~~r~~--~~k~~-------Ga~~~~~~~~~~~~~~~~~~~~~~~~   96 (168)
T d1rjwa2          27 PGEWVAIYGIGGLGHVAVQY-AKAMGLNVVAVDIGDEKLE--LAKEL-------GADLVVNPLKEDAAKFMKEKVGGVHA   96 (168)
T ss_dssp             TTCEEEEECCSTTHHHHHHH-HHHTTCEEEEECSCHHHHH--HHHHT-------TCSEEECTTTSCHHHHHHHHHSSEEE
T ss_pred             CCCEEEEeecccchhhhhHH-HhcCCCeEeccCCCHHHhh--hhhhc-------CcceecccccchhhhhcccccCCCce
Confidence            47899999999999999888 4899999999998775432  11111       211111111122    3333455666


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      ++.+.+. +++    -...+..++++..++.++
T Consensus        97 ~v~~~~~-~~~----~~~a~~~l~~~G~i~~~g  124 (168)
T d1rjwa2          97 AVVTAVS-KPA----FQSAYNSIRRGGACVLVG  124 (168)
T ss_dssp             EEESSCC-HHH----HHHHHHHEEEEEEEEECC
T ss_pred             EEeecCC-HHH----HHHHHHHhccCCceEecc
Confidence            6666542 332    245677788888888775

>d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]

Probab=96.45  E-value=0.0064  Score=49.17  Aligned_cols=110  Identities=12%  Similarity=0.198  Sum_probs=61.9

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      ..+...+|+|||.|++|..+|-.|+ +++--++..||..++.......+-... ..... .. ......+. +.+++||+
T Consensus        16 ~~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~-~~~~~-~~-~~~~~~d~-~~~~~adi   91 (160)
T d1i0za1          16 ATVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHG-SLFLQ-TP-KIVADKDY-SVTANSKI   91 (160)
T ss_dssp             CCCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHT-GGGCC-CS-EEEECSSG-GGGTTCSE
T ss_pred             ccCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhcc-ccccC-CC-eEEeccch-hhcccccE
Confidence            4566789999999999999998864 233348999998765432111111000 00001 11 11122344 45689999


Q ss_pred             EEEcCCCC--c-cccc-ccC---------HHHHhcCCCCcEEEEcCCC
Q 019387          240 ISLHPVLD--K-TTYH-LIN---------KERLATMKKEAILVNCSRG  274 (342)
Q Consensus       240 V~l~~pl~--~-~t~~-li~---------~~~l~~mk~ga~lINvaRG  274 (342)
                      |+++....  + +++- ++.         ...+....+++++|+++.-
T Consensus        92 VVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNP  139 (160)
T d1i0za1          92 VVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNP  139 (160)
T ss_dssp             EEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSS
T ss_pred             EEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCc
Confidence            98875432  2 2221 221         1234444678899998753

>d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.43  E-value=0.0092  Score=48.15  Aligned_cols=112  Identities=14%  Similarity=0.205  Sum_probs=72.1

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCch---hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                      +|.|++|++||=| ++.++.+..+ ..||+++....|..-   .....+.....   ..   ....+....++++.++.+
T Consensus         1 sl~gl~Ia~VGD~~nv~~Sli~~l-~~~g~~v~~~~P~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~d~~ea~~~a   73 (163)
T d1pvva2           1 TIKGVKVVYVGDGNNVAHSLMIAG-TKLGADVVVATPEGYEPDEKVIKWAEQNA---AE---SGGSFELLHDPVKAVKDA   73 (163)
T ss_dssp             CCTTCEEEEESCCCHHHHHHHHHH-HHTTCEEEEECCTTCCCCHHHHHHHHHHH---HH---HTCEEEEESCHHHHTTTC
T ss_pred             CcCCCEEEEECCCcHHHHHHHHHH-HHcCCeEEEecccccCCChHHHHHHHHhh---hc---ccceEEEecCHHHHhhhc
Confidence            4789999999965 4778888876 689999999887521   11111111100   00   011223457899999999


Q ss_pred             CEEEEcCCCCc----c--------cccccCHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          238 DVISLHPVLDK----T--------TYHLINKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       238 DiV~l~~pl~~----~--------t~~li~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      |+|..-.-...    +        ....++.+.++.+|++++|.=+.   ||.=|+.+
T Consensus        74 dviy~~~~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHplP~~Rg~EI~~~  131 (163)
T d1pvva2          74 DVIYTDVWASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCLPAHRGEEVTDD  131 (163)
T ss_dssp             SEEEECCCCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECSCCCBTTTBCHH
T ss_pred             cEEeecceeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCCccccccccchh
Confidence            99976532211    1        12466889999999999888765   66656554

>d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Hypothetical protein TM0312
species: Thermotoga maritima [TaxId: 2336]

Probab=96.30  E-value=0.0071  Score=49.45  Aligned_cols=67  Identities=16%  Similarity=0.307  Sum_probs=44.7

Q ss_pred             eEEEEecCHHHHH-HHHHHHhcCC--cEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEE
Q 019387          167 TVGVIGAGRIGSA-YARMMVEGFK--MNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       167 tvgIvG~G~IG~~-vA~~l~~afg--~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV  240 (342)
                      ++||||+|.+|+. .+..+ +.++  +++. ++|++++.. +.+...+       +..    ..+.+++++++  +.|+|
T Consensus         5 rigiIG~G~~g~~~h~~~l-~~~~~~~~i~~v~d~~~~~~-~~~~~~~-------~~~----~~~~~~~ell~~~~id~v   71 (181)
T d1zh8a1           5 RLGIVGCGIAARELHLPAL-KNLSHLFEITAVTSRTRSHA-EEFAKMV-------GNP----AVFDSYEELLESGLVDAV   71 (181)
T ss_dssp             EEEEECCSHHHHHTHHHHH-HTTTTTEEEEEEECSSHHHH-HHHHHHH-------SSC----EEESCHHHHHHSSCCSEE
T ss_pred             EEEEEcCCHHHHHHHHHHH-HhCCCCeEEEEEEeccHhhh-hhhhccc-------ccc----ceeeeeecccccccccee
Confidence            7999999999987 46766 4543  5776 578876542 3322222       111    13478999986  47889


Q ss_pred             EEcCCC
Q 019387          241 SLHPVL  246 (342)
Q Consensus       241 ~l~~pl  246 (342)
                      ++|+|.
T Consensus        72 ~I~tp~   77 (181)
T d1zh8a1          72 DLTLPV   77 (181)
T ss_dssp             EECCCG
T ss_pred             eccccc
Confidence            999984

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.21  E-value=0.0032  Score=51.31  Aligned_cols=95  Identities=11%  Similarity=0.066  Sum_probs=58.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEE-EEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-----cC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNL-IYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V-~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-----~a  237 (342)
                      .|.+|.|+|.|.||...++.+ +.+|+++ ++.|+++.+. +. ...+       +....-.....++.+.+.     ..
T Consensus        28 ~g~~VlI~G~G~iG~~~~~~a-k~~g~~~v~~~~~~~~k~-~~-a~~~-------Ga~~~i~~~~~~~~~~i~~~t~gg~   97 (174)
T d1f8fa2          28 PASSFVTWGAGAVGLSALLAA-KVCGASIIIAVDIVESRL-EL-AKQL-------GATHVINSKTQDPVAAIKEITDGGV   97 (174)
T ss_dssp             TTCEEEEESCSHHHHHHHHHH-HHHTCSEEEEEESCHHHH-HH-HHHH-------TCSEEEETTTSCHHHHHHHHTTSCE
T ss_pred             CCCEEEEeCCCHHHhhhhhcc-cccccceeeeeccHHHHH-HH-HHHc-------CCeEEEeCCCcCHHHHHHHHcCCCC
Confidence            488999999999999999985 8999865 5667766432 11 1111       111110011123333322     26


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+|+.|+.. +++    .+..++.++++..++.++-
T Consensus        98 D~vid~~G~-~~~----~~~~~~~~~~~G~i~~~G~  128 (174)
T d1f8fa2          98 NFALESTGS-PEI----LKQGVDALGILGKIAVVGA  128 (174)
T ss_dssp             EEEEECSCC-HHH----HHHHHHTEEEEEEEEECCC
T ss_pred             cEEEEcCCc-HHH----HHHHHhcccCceEEEEEee
Confidence            999988763 222    2456788899998888763

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.15  E-value=0.0035  Score=50.94  Aligned_cols=96  Identities=16%  Similarity=0.195  Sum_probs=60.7

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh------hc
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll------~~  236 (342)
                      .|++|.|.|. |.+|....+. ++.+|++|++.+.++++. +. ...+       +....-.....++.+-+      ..
T Consensus        28 ~g~~VlV~Ga~G~vG~~aiq~-a~~~G~~vi~~~~~~~~~-~~-~~~~-------Ga~~vi~~~~~~~~~~i~~~t~~~g   97 (174)
T d1yb5a2          28 AGESVLVHGASGGVGLAACQI-ARAYGLKILGTAGTEEGQ-KI-VLQN-------GAHEVFNHREVNYIDKIKKYVGEKG   97 (174)
T ss_dssp             TTCEEEEETCSSHHHHHHHHH-HHHTTCEEEEEESSHHHH-HH-HHHT-------TCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred             CCCEEEEEecccccccccccc-ccccCccccccccccccc-cc-cccc-------CcccccccccccHHHHhhhhhccCC
Confidence            4889999995 9999999998 589999999988766432 11 1111       22111101112343332      23


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      .|+|+-|+.  .+    .-...++.|+++..+|.++..+
T Consensus        98 ~d~v~d~~g--~~----~~~~~~~~l~~~G~iv~~G~~~  130 (174)
T d1yb5a2          98 IDIIIEMLA--NV----NLSKDLSLLSHGGRVIVVGSRG  130 (174)
T ss_dssp             EEEEEESCH--HH----HHHHHHHHEEEEEEEEECCCCS
T ss_pred             ceEEeeccc--HH----HHHHHHhccCCCCEEEEEecCC
Confidence            688877764  22    1245678899999999987544

>d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.08  E-value=0.022  Score=44.88  Aligned_cols=103  Identities=14%  Similarity=0.195  Sum_probs=57.7

Q ss_pred             eEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|+|||.|++|..+|-.++ +++--++..||..++.......+ ..+-...... ........+. +.+++||+|++...
T Consensus         2 KI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alD-l~~~~~~~~~-~~~i~~~~d~-~~~~~adiVvitag   78 (142)
T d1ojua1           2 KLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMD-LAHAAAGIDK-YPKIVGGADY-SLLKGSEIIVVTAG   78 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHH-HHHHHHTTTC-CCEEEEESCG-GGGTTCSEEEECCC
T ss_pred             EEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHH-HhhhccccCC-CCccccCCCH-HHhccccEEEEecc
Confidence            7999999999999998764 23434899999876432111111 0000000000 0112222344 46789999998864


Q ss_pred             CCcccccc------------cC--HHHHhcCCCCcEEEEcCC
Q 019387          246 LDKTTYHL------------IN--KERLATMKKEAILVNCSR  273 (342)
Q Consensus       246 l~~~t~~l------------i~--~~~l~~mk~ga~lINvaR  273 (342)
                      . +.+.+.            +.  .+.+....|.+++++++-
T Consensus        79 ~-~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN  119 (142)
T d1ojua1          79 L-ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN  119 (142)
T ss_dssp             C-CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred             c-cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence            2 222211            11  134555567889999876

>d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.012  Score=47.65  Aligned_cols=114  Identities=17%  Similarity=0.145  Sum_probs=70.0

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      +|.|++|++||=| ++.++++..+ ..||+++.+..|..-.................+   ..+....++++.+..+|+|
T Consensus         1 sl~gl~I~~vGD~~nV~~Sli~~~-~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~---~~i~~~~d~~~~~~~advi   76 (170)
T d1otha2           1 SLKGLTLSWIGDGNNILHSIMMSA-AKFGMHLQAATPKGYEPDASVTKLAEQYAKENG---TKLLLTNDPLEAAHGGNVL   76 (170)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHTTT-GGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHT---CCEEEESCHHHHHTTCSEE
T ss_pred             CCCCCEEEEEcCchhHHHHHHHHH-HHcCCEEEEEeccccCCchHHHHHHHHHHhccC---CEEEEEcCHHHHHhhhhhe
Confidence            4789999999975 3545555554 468999998887532211111111001111111   1233457899999999999


Q ss_pred             EEcCCCCcc------------cccccCHHHHhcCCCCcEEEEcC--CCcccCH
Q 019387          241 SLHPVLDKT------------TYHLINKERLATMKKEAILVNCS--RGPVIDE  279 (342)
Q Consensus       241 ~l~~pl~~~------------t~~li~~~~l~~mk~ga~lINva--RG~~vd~  279 (342)
                      .........            ....++.+.++.++++++|--+.  |+..++.
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHplP~~~~ei~~  129 (170)
T d1otha2          77 ITDTWISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCLPRKPEEVDD  129 (170)
T ss_dssp             EECCSSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECSCCCTTTBCH
T ss_pred             eeeceecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCCCccCcccch
Confidence            877654322            12446788899999999988875  4434443

>d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.06  E-value=0.0087  Score=48.28  Aligned_cols=107  Identities=13%  Similarity=0.129  Sum_probs=59.6

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +...+|+|||.|++|..+|..|+ +++.-++..||...........+-. . .......+ ......+.++ +.+||+|+
T Consensus        17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~-~-~~~~~~~~-~~~~~~d~~~-~~~adivv   92 (159)
T d2ldxa1          17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQ-H-GSLFLSTP-KIVFGKDYNV-SANSKLVI   92 (159)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHH-H-TTTTCSCC-EEEEESSGGG-GTTEEEEE
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHh-C-cchhcCCC-eEEeccchhh-hccccEEE
Confidence            45568999999999999998764 2334489999988643211111110 0 00000011 1112245444 58899998


Q ss_pred             EcCCC--Cc-ccc-ccc--CHH-------HHhcCCCCcEEEEcCC
Q 019387          242 LHPVL--DK-TTY-HLI--NKE-------RLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~~pl--~~-~t~-~li--~~~-------~l~~mk~ga~lINvaR  273 (342)
                      ++...  .+ +++ .++  |.+       .+....+++++++++.
T Consensus        93 itag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN  137 (159)
T d2ldxa1          93 ITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN  137 (159)
T ss_dssp             ECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred             EecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence            87532  22 232 222  111       2334467889999876

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.06  E-value=0.0038  Score=50.89  Aligned_cols=95  Identities=14%  Similarity=0.136  Sum_probs=60.9

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh------hc
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL------RE  236 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll------~~  236 (342)
                      .|++|.|.| .|.+|+..++. ++.+|++|++...++++. + +...       .+....-.....++.+-+      ..
T Consensus        25 ~g~~VlI~ga~g~vG~~~iql-a~~~g~~vi~~~~~~~~~-~-~l~~-------~Ga~~vi~~~~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          25 PGERVLIHSATGGVGMAAVSI-AKMIGARIYTTAGSDAKR-E-MLSR-------LGVEYVGDSRSVDFADEILELTDGYG   94 (183)
T ss_dssp             TTCEEEETTTTSHHHHHHHHH-HHHHTCEEEEEESSHHHH-H-HHHT-------TCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCCEEEEECCCCCcccccchh-hccccccceeeecccccc-c-cccc-------ccccccccCCccCHHHHHHHHhCCCC
Confidence            478999988 59999999998 589999999988765432 1 2221       222211111222343332      34


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      .|+++.++..  +    .-...++.++++..+|+++.-
T Consensus        95 ~d~v~d~~g~--~----~~~~~~~~l~~~G~~v~~G~~  126 (183)
T d1pqwa_          95 VDVVLNSLAG--E----AIQRGVQILAPGGRFIELGKK  126 (183)
T ss_dssp             EEEEEECCCT--H----HHHHHHHTEEEEEEEEECSCG
T ss_pred             EEEEEecccc--h----HHHHHHHHhcCCCEEEEEccC
Confidence            7888888752  2    124567888999999998643

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=96.02  E-value=0.007  Score=51.31  Aligned_cols=72  Identities=13%  Similarity=0.165  Sum_probs=47.9

Q ss_pred             CeEEEEecCHHHHH-HHHHHHhcC-CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEE
Q 019387          166 QTVGVIGAGRIGSA-YARMMVEGF-KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVI  240 (342)
Q Consensus       166 ktvgIvG~G~IG~~-vA~~l~~af-g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV  240 (342)
                      -+|||||+|.+|+. ++..+ +.. +++|. ++|++++.. +.+.+.|       +........+.++++++.  +.|+|
T Consensus        34 iriaiIG~G~~~~~~~~~~~-~~~~~~~ivav~d~~~~~a-~~~~~~~-------~i~~~~~~~~~d~~ell~~~~iD~V  104 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGF-AGCQHSRIEALVSGNAEKA-KIVAAEY-------GVDPRKIYDYSNFDKIAKDPKIDAV  104 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHT-TTCSSEEEEEEECSCHHHH-HHHHHHT-------TCCGGGEECSSSGGGGGGCTTCCEE
T ss_pred             EEEEEEcCcHHHHHHHHHHH-HhCCCceEEEEecCCHHHH-HHHHHhh-------ccccccccccCchhhhcccccceee
Confidence            48999999999975 55665 444 78877 678887543 3332222       222223334578899886  47899


Q ss_pred             EEcCCC
Q 019387          241 SLHPVL  246 (342)
Q Consensus       241 ~l~~pl  246 (342)
                      ++++|.
T Consensus       105 ~I~tp~  110 (221)
T d1h6da1         105 YIILPN  110 (221)
T ss_dssp             EECSCG
T ss_pred             eeccch
Confidence            999984

>d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Biliverdin IX beta reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0057  Score=50.77  Aligned_cols=73  Identities=10%  Similarity=0.055  Sum_probs=49.5

Q ss_pred             CCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhcCCEE
Q 019387          164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVI  240 (342)
Q Consensus       164 ~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~aDiV  240 (342)
                      ..|+|.|+| -|.||+.+++.|. .-|.+|.++.|++++....         ...+..-  .......++++++.++|+|
T Consensus         2 ~~kkIlV~GatG~iG~~v~~~Ll-~~g~~V~~~~R~~~~~~~~---------~~~~~~~~~gD~~d~~~l~~al~~~d~v   71 (205)
T d1hdoa_           2 AVKKIAIFGATGQTGLTTLAQAV-QAGYEVTVLVRDSSRLPSE---------GPRPAHVVVGDVLQAADVDKTVAGQDAV   71 (205)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCGGGSCSS---------SCCCSEEEESCTTSHHHHHHHHTTCSEE
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCcCEEEEEEcChhhcccc---------cccccccccccccchhhHHHHhcCCCEE
Confidence            368999999 7999999999874 6699999999887542110         0001100  1112234677889999999


Q ss_pred             EEcCCC
Q 019387          241 SLHPVL  246 (342)
Q Consensus       241 ~l~~pl  246 (342)
                      +.++..
T Consensus        72 i~~~g~   77 (205)
T d1hdoa_          72 IVLLGT   77 (205)
T ss_dssp             EECCCC
T ss_pred             EEEecc
Confidence            988754

>d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase-like protein HI0607
species: Haemophilus influenzae [TaxId: 727]

Probab=95.98  E-value=0.019  Score=46.30  Aligned_cols=94  Identities=18%  Similarity=0.217  Sum_probs=59.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .+|+|.|+|.|..|++++..| +..|+ +|.+++|+++.. +.....++       ..     ....++  ..++|+|+.
T Consensus        16 ~~~~vlIlGaGGaarai~~aL-~~~g~~~I~I~nR~~~ka-~~L~~~~~-------~~-----~~~~~~--~~~~DliIN   79 (167)
T d1npya1          16 KNAKVIVHGSGGMAKAVVAAF-KNSGFEKLKIYARNVKTG-QYLAALYG-------YA-----YINSLE--NQQADILVN   79 (167)
T ss_dssp             TTSCEEEECSSTTHHHHHHHH-HHTTCCCEEEECSCHHHH-HHHHHHHT-------CE-----EESCCT--TCCCSEEEE
T ss_pred             CCCeEEEECCCHHHHHHHHHH-HHCCCCEEEEecccHHHH-HHHHHhhh-------hh-----hhhccc--ccchhhhee
Confidence            588999999999999999997 67887 789999987542 22222111       00     111111  257999999


Q ss_pred             cCCCC--cc---cccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          243 HPVLD--KT---TYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       243 ~~pl~--~~---t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      |.|..  +.   ..-.++...   ++++.+++++.-.+.
T Consensus        80 aTpiGm~~~~~~~~l~~~~~~---~~~~~~v~D~vY~P~  115 (167)
T d1npya1          80 VTSIGMKGGKEEMDLAFPKAF---IDNASVAFDVVAMPV  115 (167)
T ss_dssp             CSSTTCTTSTTTTSCSSCHHH---HHHCSEEEECCCSSS
T ss_pred             ccccCCccccccccccccHhh---cCCcceEEEEeeccC
Confidence            99853  11   111233333   345778888866654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.98  E-value=0.0031  Score=50.86  Aligned_cols=34  Identities=15%  Similarity=0.318  Sum_probs=30.5

Q ss_pred             eEEEE-ecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          167 TVGVI-GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       167 tvgIv-G~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ||+|+ |.|.||+.+|++|+ ..|.+|.+++|++++
T Consensus         2 ki~vigGaG~iG~alA~~la-~~G~~V~l~~R~~e~   36 (212)
T d1jaya_           2 RVALLGGTGNLGKGLALRLA-TLGHEIVVGSRREEK   36 (212)
T ss_dssp             EEEEETTTSHHHHHHHHHHH-TTTCEEEEEESSHHH
T ss_pred             EEEEEeCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            79999 89999999999985 789999999998754

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=95.98  E-value=0.0053  Score=49.74  Aligned_cols=98  Identities=15%  Similarity=0.182  Sum_probs=61.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-----cC
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-----EA  237 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-----~a  237 (342)
                      .|.+|.|+|.|.+|...++.+ +.+|+ .|++.|+++++. +.. ..+       +....-....+..++..+     ..
T Consensus        32 ~g~~vli~GaG~vG~~~~~~a-~~~g~~~vv~~~~~~~k~-~~~-~~~-------ga~~~i~~~~~~~~~~~~~~~~~g~  101 (172)
T d1h2ba2          32 PGAYVAIVGVGGLGHIAVQLL-KVMTPATVIALDVKEEKL-KLA-ERL-------GADHVVDARRDPVKQVMELTRGRGV  101 (172)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHCCCEEEEEESSHHHH-HHH-HHT-------TCSEEEETTSCHHHHHHHHTTTCCE
T ss_pred             CCCEEEEeCCChHHHHHHHHH-HhhcCcccccccchhHHH-HHH-hhc-------ccceeecCcccHHHHHHHhhCCCCc
Confidence            378999999999999999985 77776 677788876532 211 111       111110011123344443     37


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV  276 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~  276 (342)
                      |+|+.|+.. +.+    -...++.+++|..++.++-++-
T Consensus       102 d~vid~~g~-~~~----~~~a~~~l~~~G~iv~~G~~~~  135 (172)
T d1h2ba2         102 NVAMDFVGS-QAT----VDYTPYLLGRMGRLIIVGYGGE  135 (172)
T ss_dssp             EEEEESSCC-HHH----HHHGGGGEEEEEEEEECCCSSC
T ss_pred             eEEEEecCc-chH----HHHHHHHHhCCCEEEEEeCccc
Confidence            889988863 221    2445788899999999886553

>d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Lactate dehydrogenase
species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]

Probab=95.92  E-value=0.01  Score=46.98  Aligned_cols=104  Identities=17%  Similarity=0.246  Sum_probs=58.4

Q ss_pred             CeEEEEecCHHHHHHHHHHH-hcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          166 QTVGVIGAGRIGSAYARMMV-EGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~-~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      .+|+|||.|++|..+|..++ +++.-++..+|..+........+ ..+-..-.+  ........+.+ .+++||+|+++.
T Consensus         2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~D-l~~a~~~~~--~~~i~~~~~~~-~~~daDvVVita   77 (143)
T d1llda1           2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLD-MQHGSSFYP--TVSIDGSDDPE-ICRDADMVVITA   77 (143)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHH-HHHTGGGST--TCEEEEESCGG-GGTTCSEEEECC
T ss_pred             CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHH-HHhccccCC--CceeecCCCHH-HhhCCcEEEEec
Confidence            47999999999999997653 35555899999887532111111 000000001  11122234555 478899999886


Q ss_pred             CCC--c-ccc-ccc--C-------HHHHhcCCCCcEEEEcCC
Q 019387          245 VLD--K-TTY-HLI--N-------KERLATMKKEAILVNCSR  273 (342)
Q Consensus       245 pl~--~-~t~-~li--~-------~~~l~~mk~ga~lINvaR  273 (342)
                      -..  + +++ .++  |       ...+....|++++++++-
T Consensus        78 G~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtN  119 (143)
T d1llda1          78 GPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITN  119 (143)
T ss_dssp             CCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred             ccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCC
Confidence            421  1 121 111  1       134455567889998873

>d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.88  E-value=0.0069  Score=48.04  Aligned_cols=104  Identities=18%  Similarity=0.279  Sum_probs=60.6

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcCCc--EEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhcCCEE
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGFKM--NLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~afg~--~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~aDiV  240 (342)
                      .+|+|+| .|++|+.+|..|+ .-|.  ++..+|..... .+.. +     +.......  .......+..+.++.||+|
T Consensus         1 sKv~IiGA~G~VG~~~A~~l~-~~~~~~elvLiDi~~~~-~~a~-D-----l~~~~~~~~~~~~~~~~~~~~~~~~aDiv   72 (144)
T d1mlda1           1 AKVAVLGASGGIGQPLSLLLK-NSPLVSRLTLYDIAHTP-GVAA-D-----LSHIETRATVKGYLGPEQLPDCLKGCDVV   72 (144)
T ss_dssp             CEEEEETTTSTTHHHHHHHHH-TCTTCSEEEEEESSSHH-HHHH-H-----HTTSSSSCEEEEEESGGGHHHHHTTCSEE
T ss_pred             CeEEEECCCChHHHHHHHHHH-hCCccceEEEEeccccc-hhhH-H-----HhhhhhhcCCCeEEcCCChHHHhCCCCEE
Confidence            4799999 5999999999874 3343  78899986532 1111 1     11111110  1112235667888999999


Q ss_pred             EEcCCC--Cc-ccc-cccC---------HHHHhcCCCCcEEEEcCCCcccCH
Q 019387          241 SLHPVL--DK-TTY-HLIN---------KERLATMKKEAILVNCSRGPVIDE  279 (342)
Q Consensus       241 ~l~~pl--~~-~t~-~li~---------~~~l~~mk~ga~lINvaRG~~vd~  279 (342)
                      +++...  .+ ++| .++.         .+.+....|.++++.++.  .+|.
T Consensus        73 Vitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtN--PvD~  122 (144)
T d1mlda1          73 VIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISN--PVNS  122 (144)
T ss_dssp             EECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS--CHHH
T ss_pred             EECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecC--chhh
Confidence            987542  22 222 1121         123444577899999875  4443

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=95.81  E-value=0.0054  Score=49.78  Aligned_cols=91  Identities=18%  Similarity=0.158  Sum_probs=59.1

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHH--HhhcCCEE
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDE--VLREADVI  240 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~--ll~~aDiV  240 (342)
                      .|++|.|.|- |.+|+...+. ++.+|++|++.+.++++....  ..       -+.... +...+..++  .....|+|
T Consensus        27 ~g~~VlI~ga~G~vG~~aiql-ak~~G~~vi~~~~~~~~~~~~--~~-------lGa~~~-i~~~~~~~~~~~~~g~D~v   95 (171)
T d1iz0a2          27 PGEKVLVQAAAGALGTAAVQV-ARAMGLRVLAAASRPEKLALP--LA-------LGAEEA-ATYAEVPERAKAWGGLDLV   95 (171)
T ss_dssp             TTCEEEESSTTBHHHHHHHHH-HHHTTCEEEEEESSGGGSHHH--HH-------TTCSEE-EEGGGHHHHHHHTTSEEEE
T ss_pred             CCCEEEEEeccccchhhhhhh-hcccccccccccccccccccc--cc-------ccccee-eehhhhhhhhhcccccccc
Confidence            4889999995 9999999998 589999999998876543111  11       121111 111111121  23568999


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      +-|..  + +   + ...++.++++..+|.++
T Consensus        96 ~d~~G--~-~---~-~~~~~~l~~~G~~v~~G  120 (171)
T d1iz0a2          96 LEVRG--K-E---V-EESLGLLAHGGRLVYIG  120 (171)
T ss_dssp             EECSC--T-T---H-HHHHTTEEEEEEEEEC-
T ss_pred             ccccc--h-h---H-HHHHHHHhcCCcEEEEe
Confidence            88764  1 1   2 56789999999999986

>d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: MJ0490, lactate/malate dehydrogenase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.79  E-value=0.015  Score=46.12  Aligned_cols=33  Identities=30%  Similarity=0.464  Sum_probs=26.9

Q ss_pred             eEEEEe-cCHHHHHHHHHHHhcCC--cEEEEEcCCch
Q 019387          167 TVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQA  200 (342)
Q Consensus       167 tvgIvG-~G~IG~~vA~~l~~afg--~~V~~~d~~~~  200 (342)
                      +|+||| .|++|+.+|..| ...|  -++..+|..+.
T Consensus         2 KV~IiGA~G~VG~~~a~~l-~~~~l~~el~L~D~~~~   37 (145)
T d1hyea1           2 KVTIIGASGRVGSATALLL-AKEPFMKDLVLIGREHS   37 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HTCTTCCEEEEEECGGG
T ss_pred             EEEEECCCChHHHHHHHHH-HhCCcccccccccchhh
Confidence            699999 599999999987 4545  38999998753

>d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.69  E-value=0.07  Score=42.44  Aligned_cols=114  Identities=18%  Similarity=0.200  Sum_probs=68.2

Q ss_pred             cCCCeEEEEec--CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          163 LKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       163 L~gktvgIvG~--G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      |.|++|++||=  .++-++.+..+ ..||+++....|..-...+.............+   ..+....++++.++.+|+|
T Consensus         1 l~g~ki~~vGD~~nnV~~Sli~~~-~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~---~~i~~~~d~~~ai~~aDvi   76 (161)
T d1vlva2           1 LKGVKVVFMGDTRNNVATSLMIAC-AKMGMNFVACGPEELKPRSDVFKRCQEIVKETD---GSVSFTSNLEEALAGADVV   76 (161)
T ss_dssp             STTCEEEEESCTTSHHHHHHHHHH-HHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHC---CEEEEESCHHHHHTTCSEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEecchhhhhhhhHHHHHHHHHhhcC---CceEEEecHHHhhhhhhhe
Confidence            57999999994  58999999986 579999998887532111111000000001111   1233457899999999999


Q ss_pred             EEcCCCCcc------------ccccc-CHHHHhcCCCCcEEEEcC---CCcccCHH
Q 019387          241 SLHPVLDKT------------TYHLI-NKERLATMKKEAILVNCS---RGPVIDEV  280 (342)
Q Consensus       241 ~l~~pl~~~------------t~~li-~~~~l~~mk~ga~lINva---RG~~vd~~  280 (342)
                      ..-.-....            ....+ +......+|++++|.=+.   ||.=|+.+
T Consensus        77 yt~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~lP~~r~~Eis~~  132 (161)
T d1vlva2          77 YTDVWASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCLPAVKGQEVTYE  132 (161)
T ss_dssp             EECCCC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECSCCCBTTTBCHH
T ss_pred             eccceeeecccccchhhhccccceeeeehhhhcccCCCeeEecCCCcccccccchh
Confidence            776543211            11223 334444578888887764   67666654

>d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: 6-phospho-beta-glucosidase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.65  E-value=0.015  Score=46.73  Aligned_cols=75  Identities=13%  Similarity=0.224  Sum_probs=45.0

Q ss_pred             eEEEEecCHHHHHHHHH-HHh---cC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          167 TVGVIGAGRIGSAYARM-MVE---GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~-l~~---af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      +|.|||-|++|.+.+-. +++   .+ .-++..+|..++.. +...+.......    .........+.++.+++||+|+
T Consensus         2 KIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~-~~~~d~~~~~~~----~~~~~~~t~~~~~~l~~aDvVV   76 (162)
T d1up7a1           2 RIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQ-KIVVDFVKRLVK----DRFKVLISDTFEGAVVDAKYVI   76 (162)
T ss_dssp             EEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHH-HHHHHHHHHHHT----TSSEEEECSSHHHHHTTCSEEE
T ss_pred             EEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHH-HHHHHHHHhhhc----cCceEEEecCcccccCCCCEEE
Confidence            69999999988777632 212   23 34899999987542 221111111111    1122233467889999999999


Q ss_pred             EcCCC
Q 019387          242 LHPVL  246 (342)
Q Consensus       242 l~~pl  246 (342)
                      ++.-.
T Consensus        77 ita~~   81 (162)
T d1up7a1          77 FQFRP   81 (162)
T ss_dssp             ECCCT
T ss_pred             Eeccc
Confidence            98753

>d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.60  E-value=0.027  Score=46.27  Aligned_cols=107  Identities=13%  Similarity=0.148  Sum_probs=65.9

Q ss_pred             ccCCCeEEEEec--CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          162 LLKGQTVGVIGA--GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~L~gktvgIvG~--G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .|.|.+|++||=  -++.++++..+ ..||+++.+..|..-...+...+.........+   ..+....++++.++++|+
T Consensus         2 ~l~~lkia~vGD~~nnV~~Sli~~~-~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~---~~~~~~~d~~eai~~aDv   77 (185)
T d1dxha2           2 PLHDISYAYLGDARNNMGNSLLLIG-AKLGMDVRIAAPKALWPHDEFVAQCKKFAEESG---AKLTLTEDPKEAVKGVDF   77 (185)
T ss_dssp             CGGGCEEEEESCCSSHHHHHHHHHH-HHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHT---CEEEEESCHHHHTTTCSE
T ss_pred             CCCCCEEEEEcCCcchHHHHHHHHH-HHcCCEEEEEccHHHHhhhHHHHHHHHHhhccC---CeEEEEeChhhccccccE
Confidence            478999999994  48999999986 589999999988532111111111000111111   123345789999999999


Q ss_pred             EEEcCCCCcc-------------ccccc-CHHHHhcCCCCcEEEEcC
Q 019387          240 ISLHPVLDKT-------------TYHLI-NKERLATMKKEAILVNCS  272 (342)
Q Consensus       240 V~l~~pl~~~-------------t~~li-~~~~l~~mk~ga~lINva  272 (342)
                      |..-.-....             ....+ ++...+.+|++++|.=+.
T Consensus        78 Vyt~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L  124 (185)
T d1dxha2          78 VHTDVWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL  124 (185)
T ss_dssp             EEECCCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred             EEeehhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence            9765532211             11233 344556678999887765

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.57  E-value=0.036  Score=44.88  Aligned_cols=94  Identities=15%  Similarity=0.070  Sum_probs=57.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccC-CHHHHh-----h
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRAS-SMDEVL-----R  235 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~l~~ll-----~  235 (342)
                      .|.+|.|+|.|.||...++.+ +.+|+ +|++.|+++++....  ..+       +.... .....+ ..+...     .
T Consensus        28 ~G~~VlV~G~G~iGl~a~~~a-k~~Ga~~Vi~~d~~~~r~~~a--~~~-------Ga~~~i~~~~~~~~~~~~~~~~~~~   97 (174)
T d1e3ia2          28 PGSTCAVFGLGCVGLSAIIGC-KIAGASRIIAIDINGEKFPKA--KAL-------GATDCLNPRELDKPVQDVITELTAG   97 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGHHHH--HHT-------TCSEEECGGGCSSCHHHHHHHHHTS
T ss_pred             CCCEEEEECCChHHHHHHHHH-HHhCCceeeeeccchHHHHHH--HHh-------CCCcccCCccchhhhhhhHhhhhcC
Confidence            488999999999999999984 89998 677888877543111  111       11111 001111 222222     4


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCC-cEEEEcC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKE-AILVNCS  272 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~g-a~lINva  272 (342)
                      ..|+++-|... +++    -...++.+++| ..++-++
T Consensus        98 G~d~vie~~G~-~~~----~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          98 GVDYSLDCAGT-AQT----LKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             CBSEEEESSCC-HHH----HHHHHHTBCTTTCEEEECC
T ss_pred             CCcEEEEeccc-chH----HHHHHHHhhcCCeEEEecC
Confidence            57999988863 222    24556777775 5666665

>d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.52  E-value=0.021  Score=45.45  Aligned_cols=102  Identities=16%  Similarity=0.261  Sum_probs=65.4

Q ss_pred             cCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       163 L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      |.|++|++||=   +++.++.+..+ ..||+++....|..-...+.....    ....   ...+....++++.++++|+
T Consensus         2 l~gl~i~~vGD~~~srV~~Sli~~~-~~~g~~~~~~~P~~~~~~~~~~~~----~~~~---~~~~~~~~d~~~av~~aDv   73 (157)
T d1ml4a2           2 IDGLKIGLLGDLKYGRTVHSLAEAL-TFYDVELYLISPELLRMPRHIVEE----LREK---GMKVVETTTLEDVIGKLDV   73 (157)
T ss_dssp             SSSEEEEEESCTTTCHHHHHHHHHG-GGSCEEEEEECCGGGCCCHHHHHH----HHHT---TCCEEEESCTHHHHTTCSE
T ss_pred             cCCCEEEEEcCCccChHHHHHHHHH-HhcCCcEEEEccchhhcchHHHHH----HHhh---cccceeecCHHHhhccCcE
Confidence            67999999998   68999999986 689999999887643222221111    1111   1122335789999999999


Q ss_pred             EEEcCCCCcc-----------cccccCHHHHhcCCCCcEEEEcC
Q 019387          240 ISLHPVLDKT-----------TYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       240 V~l~~pl~~~-----------t~~li~~~~l~~mk~ga~lINva  272 (342)
                      |.........           ....++.+.++.+++.+++-=..
T Consensus        74 vy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~mHpl  117 (157)
T d1ml4a2          74 LYVTRIQKERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL  117 (157)
T ss_dssp             EEECCCCGGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred             EEeeccccccccchhhHHhhcchhccCHHHHhhcCCCeEEecCC
Confidence            9776543221           11234556666677666655544

>d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Alpha-glucosidase AglA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.51  E-value=0.018  Score=46.75  Aligned_cols=79  Identities=15%  Similarity=0.316  Sum_probs=47.5

Q ss_pred             CCeEEEEecCHHHHHHHH--HHH--hcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          165 GQTVGVIGAGRIGSAYAR--MMV--EGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~--~l~--~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      +.+|+|||.|++|...+-  .++  +.+ +-++..+|..++.. +....-..... ........+....+.++.++.||+
T Consensus         2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~-~~~~~~~~~~~-~~~~~~~~i~~~td~~eaL~dad~   79 (171)
T d1obba1           2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERL-DAILTIAKKYV-EEVGADLKFEKTMNLDDVIIDADF   79 (171)
T ss_dssp             CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHH-HHHHHHHHHHH-HHTTCCCEEEEESCHHHHHTTCSE
T ss_pred             CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHH-HHHHHHHHHHH-HhcCCCeEEEEeCChhhcccCCCe
Confidence            358999999999976432  122  234 35999999986532 21111000111 111223344455789999999999


Q ss_pred             EEEcCC
Q 019387          240 ISLHPV  245 (342)
Q Consensus       240 V~l~~p  245 (342)
                      |+++..
T Consensus        80 Vv~~~~   85 (171)
T d1obba1          80 VINTAM   85 (171)
T ss_dssp             EEECCC
T ss_pred             Eeeecc
Confidence            998754

>d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=95.48  E-value=0.035  Score=44.06  Aligned_cols=106  Identities=24%  Similarity=0.317  Sum_probs=66.5

Q ss_pred             cCCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          163 LKGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       163 L~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      |.|++|++||=   |++.++.+..+ ..||+++..+-+.........      ...   .....+....++++.++++|+
T Consensus         1 l~gl~i~~vGD~~~sRv~~Sl~~~l-~~~g~~~~~~~p~~~~~~~~~------~~~---~~~~~~~~~~d~~eai~~aDv   70 (153)
T d1pg5a2           1 IDGLVFALLGDLKYARTVNSLLRIL-TRFRPKLVYLISPQLLRARKE------ILD---ELNYPVKEVENPFEVINEVDV   70 (153)
T ss_dssp             STTCEEEEEECCSSCHHHHHHHHHG-GGSCCSEEEEECCGGGCCCHH------HHT---TCCSCEEEESCGGGTGGGCSE
T ss_pred             CCCCEEEEECCCCccHHHHHHHHHH-HHcCCeeEEEecccccccchh------hcc---cCCCeEEEEeCHHHHhhcCCe
Confidence            57999999996   56999999986 689998765544322111110      001   111233445789999999999


Q ss_pred             EEEcCCCCcc-----------cccccCHHHHhcCCCCcEEEEcC-CCcccC
Q 019387          240 ISLHPVLDKT-----------TYHLINKERLATMKKEAILVNCS-RGPVID  278 (342)
Q Consensus       240 V~l~~pl~~~-----------t~~li~~~~l~~mk~ga~lINva-RG~~vd  278 (342)
                      |...-.....           ...-++.+.++.++++++|.-+. ||.=|+
T Consensus        71 vy~~~~q~~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~LPR~~EI~  121 (153)
T d1pg5a2          71 LYVTRIQKERFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPLPRVNEID  121 (153)
T ss_dssp             EEEECCCSTTSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCSCCSSSBC
T ss_pred             EEEeeeeehhccchhHHHHHHHhhhhhHHHHhccCCCeEEecCCCCcCCcc
Confidence            9653211110           12346788888999998887765 554333

>d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PF0725
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.47  E-value=0.0087  Score=45.62  Aligned_cols=100  Identities=12%  Similarity=0.128  Sum_probs=68.7

Q ss_pred             CeEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          166 QTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvgIvG~----G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      |+|.|||.    |..|..+.+.| +.+|.+|+.++|+...-                   .+...+.+++++-..-|+++
T Consensus         2 KsIAVvGaS~~~~k~g~~v~~~L-~~~g~~V~pVnP~~~~i-------------------~G~~~y~sl~~lp~~~D~vv   61 (116)
T d1y81a1           2 RKIALVGASKNPAKYGNIILKDL-LSKGFEVLPVNPNYDEI-------------------EGLKCYRSVRELPKDVDVIV   61 (116)
T ss_dssp             CEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGSCTTCCEEE
T ss_pred             cEEEEEcccCCCCCcHHHHHHHH-HHCCCEEEEEccccccc-------------------cCccccccchhccccceEEE
Confidence            68999994    68899999997 78999999998764321                   13345678888888889999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +++|. +.+..++.+ . ..+...++++.-+   ..++ ++.+.+++..+.
T Consensus        62 i~vp~-~~~~~~l~~-~-~~~g~k~v~~~~g---~~~~-~~~~~a~~~gi~  105 (116)
T d1y81a1          62 FVVPP-KVGLQVAKE-A-VEAGFKKLWFQPG---AESE-EIRRFLEKAGVE  105 (116)
T ss_dssp             ECSCH-HHHHHHHHH-H-HHTTCCEEEECTT---SCCH-HHHHHHHHHTCE
T ss_pred             EEeCH-HHHHHHHHH-H-HhcCCceEEeccc---hhhH-HHHHHHHHcCCE
Confidence            99983 344455543 2 2344456776543   3444 567777665564

>d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein TT1466
species: Thermus thermophilus [TaxId: 274]

Probab=95.42  E-value=0.027  Score=43.88  Aligned_cols=102  Identities=8%  Similarity=0.092  Sum_probs=70.5

Q ss_pred             CCCeEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       164 ~gktvgIvG~----G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .-|+|+|||.    |+.|..+++.| +.+|.++..+.+++...                 .-.+...+.++.++-..-|+
T Consensus        12 ~pksIAVVGaS~~~~k~g~~v~~~L-~~~g~~~~~v~~~~~~~-----------------~i~g~~~~~~l~~i~~~iD~   73 (136)
T d1iuka_          12 QAKTIAVLGAHKDPSRPAHYVPRYL-REQGYRVLPVNPRFQGE-----------------ELFGEEAVASLLDLKEPVDI   73 (136)
T ss_dssp             HCCEEEEETCCSSTTSHHHHHHHHH-HHTTCEEEEECGGGTTS-----------------EETTEECBSSGGGCCSCCSE
T ss_pred             CCCeEEEEeecCCCCCchHHHHHHH-hcCCCCceEEEeccccc-----------------eeeceecccchhhccCCCce
Confidence            4579999997    78999999997 78999999998765321                 11233345788888778899


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcC
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQN  289 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g  289 (342)
                      +++++| .+....++.+-  ..+..+++++..|   ..++++...|.+.|
T Consensus        74 v~v~~p-~~~v~~~v~~~--~~~g~k~i~~q~G---~~~~e~~~~a~~~G  117 (136)
T d1iuka_          74 LDVFRP-PSALMDHLPEV--LALRPGLVWLQSG---IRHPEFEKALKEAG  117 (136)
T ss_dssp             EEECSC-HHHHTTTHHHH--HHHCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred             EEEecc-HHHHHHHHHHH--HhhCCCeEEEecC---ccCHHHHHHHHHcC
Confidence            999998 34555666543  2345667888654   35666554444444

>d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=95.41  E-value=0.029  Score=44.13  Aligned_cols=103  Identities=14%  Similarity=0.213  Sum_probs=56.2

Q ss_pred             CeEEEEe-cCHHHHHHHHHHH-hcCCcEEEEEcCCchh-HHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          166 QTVGVIG-AGRIGSAYARMMV-EGFKMNLIYYDLYQAT-RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~-~afg~~V~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .+|+|+| .|++|+.+|-.++ +++.-++..||..... ..+.....+..-..-..  .... ...+.++ +.+||+|++
T Consensus         1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~--~~~i-~~~~~~~-~~~aDiVvi   76 (142)
T d1o6za1           1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDS--NTRV-RQGGYED-TAGSDVVVI   76 (142)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTC--CCEE-EECCGGG-GTTCSEEEE
T ss_pred             CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccC--CceE-eeCCHHH-hhhcCEEEE
Confidence            4799999 5999999998764 2344489999964321 11111111110000011  1111 1234444 589999998


Q ss_pred             cCCCCcccccc------------cC--HHHHhcCCCCcEEEEcCC
Q 019387          243 HPVLDKTTYHL------------IN--KERLATMKKEAILVNCSR  273 (342)
Q Consensus       243 ~~pl~~~t~~l------------i~--~~~l~~mk~ga~lINvaR  273 (342)
                      +.-. +...+.            +.  .+.+....|+++++.++.
T Consensus        77 taG~-~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtN  120 (142)
T d1o6za1          77 TAGI-PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSN  120 (142)
T ss_dssp             CCCC-CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCS
T ss_pred             eccc-ccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEecC
Confidence            7542 222222            11  134566677889998854

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=95.23  E-value=0.043  Score=44.42  Aligned_cols=38  Identities=24%  Similarity=0.237  Sum_probs=33.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR  202 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~  202 (342)
                      .|.+|.|+|.|.+|...++.+ +.+|+ +|++.|+++++.
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~a-k~~G~~~Vi~vd~~~~kl   67 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGC-KSAGASRIIGIDLNKDKF   67 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH
T ss_pred             CCCEEEEECCCchhHHHHHHH-HHcCCceEEEecCcHHHH
Confidence            588999999999999999985 89995 899999988654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.21  E-value=0.0098  Score=47.01  Aligned_cols=46  Identities=15%  Similarity=0.122  Sum_probs=38.1

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHH
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKF  206 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~  206 (342)
                      ...|.||+|.|||-|.+|.+-|+.| ..+|++|+++++...+.+..+
T Consensus         8 ~~~l~gkrvLViGgG~va~~ka~~L-l~~GA~VtVvap~~~~~l~~~   53 (150)
T d1kyqa1           8 AHQLKDKRILLIGGGEVGLTRLYKL-MPTGCKLTLVSPDLHKSIIPK   53 (150)
T ss_dssp             EECCTTCEEEEEEESHHHHHHHHHH-GGGTCEEEEEEEEECTTHHHH
T ss_pred             heeeCCCEEEEECCCHHHHHHHHHH-HHCCCEEEEEeCCCCHHHHHH
Confidence            3569999999999999999999998 578999999987665544443

>d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain
domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain
species: Streptococcus pyogenes [TaxId: 1314]

Probab=95.05  E-value=0.033  Score=41.60  Aligned_cols=62  Identities=13%  Similarity=0.172  Sum_probs=45.6

Q ss_pred             CCeEEEEec----------CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh
Q 019387          165 GQTVGVIGA----------GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL  234 (342)
Q Consensus       165 gktvgIvG~----------G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll  234 (342)
                      .|+|||+|+          ..-.-.+.+.| +..|++|.+|||+....                ..........++++++
T Consensus        15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L-~~~g~~v~iyDP~v~~~----------------~~~~~~~~~~~l~~~~   77 (108)
T d1dlja3          15 VKVVGVYRLIMKSNSDNFRESAIKDVIDIL-KSKDIKIIIYEPMLNKL----------------ESEDQSVLVNDLENFK   77 (108)
T ss_dssp             SCEEEEECCCSSTTCSCCTTCHHHHHHHHH-HTSSCEEEEECTTCSCC----------------CTTCCSEECCCHHHHH
T ss_pred             CCEEEEEEEEECCCCcchhhhhHHHHHHHH-hccccceeeecCCcChh----------------HhccCCEEEeCHHHHH
Confidence            469999998          45667888987 68899999999987531                0011222346899999


Q ss_pred             hcCCEEEEc
Q 019387          235 READVISLH  243 (342)
Q Consensus       235 ~~aDiV~l~  243 (342)
                      ..||+|++.
T Consensus        78 ~~sDiII~~   86 (108)
T d1dlja3          78 KQANIIVTN   86 (108)
T ss_dssp             HHCSEEECS
T ss_pred             hhCCEEEEc
Confidence            999987754

>d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.045  Score=43.11  Aligned_cols=101  Identities=23%  Similarity=0.255  Sum_probs=58.2

Q ss_pred             eEEEEec-CHHHHHHHHHHHh--cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCC-Cc-cccccCCHHHHhhcCCEEE
Q 019387          167 TVGVIGA-GRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQ-PV-TWKRASSMDEVLREADVIS  241 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~~--afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~l~~ll~~aDiV~  241 (342)
                      +|+|+|. |++|+.+|-.|+.  .+.-++..+|..+....+. .+     +...... .. ......+ .+.+++||+|+
T Consensus         2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a-~D-----l~h~~~~~~~~~~~~~~~-~~~~~~aDvvv   74 (145)
T d2cmda1           2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVA-VD-----LSHIPTAVKIKGFSGEDA-TPALEGADVVL   74 (145)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHH-HH-----HHTSCSSCEEEEECSSCC-HHHHTTCSEEE
T ss_pred             EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHH-HH-----HHCCccccCCcEEEcCCC-ccccCCCCEEE
Confidence            7999995 9999999987642  4667999999764322111 11     1111111 01 1112233 44678999999


Q ss_pred             EcCCC--Cc-ccc-cccC---------HHHHhcCCCCcEEEEcCCC
Q 019387          242 LHPVL--DK-TTY-HLIN---------KERLATMKKEAILVNCSRG  274 (342)
Q Consensus       242 l~~pl--~~-~t~-~li~---------~~~l~~mk~ga~lINvaRG  274 (342)
                      ++.-.  .+ +++ .++.         .+.+....|++++|.++..
T Consensus        75 itaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNP  120 (145)
T d2cmda1          75 ISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNP  120 (145)
T ss_dssp             ECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSS
T ss_pred             ECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCC
Confidence            98632  22 122 2221         1345555678899998763

>d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Biliverdin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.89  E-value=0.015  Score=46.98  Aligned_cols=106  Identities=23%  Similarity=0.205  Sum_probs=58.0

Q ss_pred             eEEEEecCHHHHHHHHHHHhcC----CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc--CCEE
Q 019387          167 TVGVIGAGRIGSAYARMMVEGF----KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE--ADVI  240 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~af----g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~--aDiV  240 (342)
                      +|||||+|.+|+..++.+ +..    ...+...+.....                  .........++++++..  .|+|
T Consensus         9 kv~iIG~G~~g~~h~~~l-~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~e~l~~~~iD~V   69 (172)
T d1lc0a1           9 GVVVVGVGRAGSVRLRDL-KDPRSAAFLNLIGFVSRREL------------------GSLDEVRQISLEDALRSQEIDVA   69 (172)
T ss_dssp             EEEEECCSHHHHHHHHHH-TSHHHHTTEEEEEEECSSCC------------------CEETTEEBCCHHHHHHCSSEEEE
T ss_pred             EEEEEcCCHHHHHHHHHH-HhCCCCcEEEEEeccchHHH------------------HHhhccCcCCHHHHHhCCCcchh
Confidence            799999999999988876 432    2334333222110                  00111124588999864  5789


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEc-CCCcccCHHHHHHHHHc-CCceEEE
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNC-SRGPVIDEVALVEHLKQ-NPMFRVG  295 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINv-aRG~~vd~~aL~~aL~~-g~i~~aa  295 (342)
                      ++|+|  ++++.-+-...++.=|  .+|+.- ---.+-+-+.|.++.++ |.....+
T Consensus        70 ~I~tp--~~~H~~~~~~al~~gk--~V~~EKP~a~~~~e~~~l~~~a~~~~~~~~v~  122 (172)
T d1lc0a1          70 YICSE--SSSHEDYIRQFLQAGK--HVLVEYPMTLSFAAAQELWELAAQKGRVLHEE  122 (172)
T ss_dssp             EECSC--GGGHHHHHHHHHHTTC--EEEEESCSCSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hhccc--ccccccccccccccch--hhhcCCCccccHHHHHHHHHHHHHcCCeEEEe
Confidence            99998  3554444444444332  366552 11234455666665544 4443333

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.85  E-value=0.015  Score=46.63  Aligned_cols=94  Identities=17%  Similarity=0.181  Sum_probs=57.8

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHhh-----
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVLR-----  235 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll~-----  235 (342)
                      .|.+|.|+|. |.+|...++.+ ++.| .+|++.++++++...  ...+       +.... .....+..+++.+     
T Consensus        27 ~g~~vlV~G~~G~vG~~~~~~~-~~~g~~~V~~~~~~~~~~~~--~~~~-------Ga~~~i~~~~~~~~~~~~~~~~~~   96 (170)
T d1jvba2          27 PTKTLLVVGAGGGLGTMAVQIA-KAVSGATIIGVDVREEAVEA--AKRA-------GADYVINASMQDPLAEIRRITESK   96 (170)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHH-HHHTCCEEEEEESSHHHHHH--HHHH-------TCSEEEETTTSCHHHHHHHHTTTS
T ss_pred             CCCEEEEEeccccceeeeeecc-cccccccccccccchhhHHH--HHHc-------CCceeeccCCcCHHHHHHHHhhcc
Confidence            4789999995 99999999985 6777 589999988754311  1111       11100 0111112333332     


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      ..|+++-|... +++.    ...+..+++|..++.++
T Consensus        97 ~~d~vid~~g~-~~~~----~~a~~~l~~~G~iv~~G  128 (170)
T d1jvba2          97 GVDAVIDLNNS-EKTL----SVYPKALAKQGKYVMVG  128 (170)
T ss_dssp             CEEEEEESCCC-HHHH----TTGGGGEEEEEEEEECC
T ss_pred             cchhhhccccc-chHH----HhhhhhcccCCEEEEec
Confidence            37888888753 2222    23467888999998886

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.83  E-value=0.033  Score=46.05  Aligned_cols=37  Identities=38%  Similarity=0.341  Sum_probs=31.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~  201 (342)
                      .|.+|.|+|.|.+|...+.. ++.+|+ +|++.|+++++
T Consensus        25 ~G~tVlV~GaG~vGl~a~~~-ak~~ga~~Vi~~d~~~~r   62 (195)
T d1kola2          25 PGSTVYVAGAGPVGLAAAAS-ARLLGAAVVIVGDLNPAR   62 (195)
T ss_dssp             TTCEEEEECCSHHHHHHHHH-HHHTTCSEEEEEESCHHH
T ss_pred             CCCEEEEECcCHHHHHHHHH-HHhhcccceeeecccchh
Confidence            48899999999999998888 478888 78899988754

>d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Malate oxidoreductase (malic enzyme)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.78  E-value=0.3  Score=40.99  Aligned_cols=154  Identities=12%  Similarity=0.083  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch--
Q 019387          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA--  200 (342)
Q Consensus       123 vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~--  200 (342)
                      +|=.+++-+|+..|-.                     |..|...++.|+|.|.-|-.+|+.+....--+++.+|+..-  
T Consensus         5 TaaV~LAgll~a~~~~---------------------g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~   63 (222)
T d1vl6a1           5 TAVVVSAAFLNALKLT---------------------EKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILN   63 (222)
T ss_dssp             HHHHHHHHHHHHHHHH---------------------TCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECC
T ss_pred             HHHHHHHHHHHHHHHh---------------------CCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEE
Confidence            4556777777777632                     35689999999999999999999874333337888998721  


Q ss_pred             -h----HHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          201 -T----RLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       201 -~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                       .    ....+...+    ......   .....++.+++..++++...-     +.+++.++.+..|.+..++.=.|.-.
T Consensus        64 ~~r~~~~~~~~~~~~----~~~~~~---~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt  131 (222)
T d1vl6a1          64 ENDPETCLNEYHLEI----ARITNP---ERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPV  131 (222)
T ss_dssp             TTSGGGCSSHHHHHH----HHTSCT---TCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred             cCcccccccHHHHHH----Hhhhcc---hhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCc
Confidence             1    111111111    111111   112357889999999876553     47899999999999999999888776


Q ss_pred             ccCHHHHHHHHHcCCceEEEEecCCCCC---CCcccccccc
Q 019387          276 VIDEVALVEHLKQNPMFRVGLDVFEVTE---LGFSSFKHIS  313 (342)
Q Consensus       276 ~vd~~aL~~aL~~g~i~~aaLDV~~~EP---~~~~~tPhia  313 (342)
                      ---|..  .+-..|+...|.  --...|   .|.++.|-++
T Consensus       132 ~~~e~~--~a~~~G~ai~At--Gsp~~p~Q~NN~yiFPGig  168 (222)
T d1vl6a1         132 PEIDPE--LAREAGAFIVAT--GRSDHPNQVNNLLAFPGIM  168 (222)
T ss_dssp             CSSCHH--HHHHTTCSEEEE--SCTTSSSBCCGGGTHHHHH
T ss_pred             cchhhh--hheeccceEEec--CCCCCCccCcceeecchHH
Confidence            544443  334566655443  222334   7788877764

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.036  Score=43.55  Aligned_cols=95  Identities=8%  Similarity=0.010  Sum_probs=54.5

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc--ccCCHHH-HhhcCCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK--RASSMDE-VLREADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~-ll~~aDiV~l~  243 (342)
                      .+-|+|+|.+|+.+++.| ...|.+|++.+..++...+......     ..+.......  ....|++ -+.+||.|+++
T Consensus         5 HiII~G~g~~g~~l~~~L-~~~~~~v~vId~d~~~~~~~~~~~~-----~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~   78 (153)
T d1id1a_           5 HFIVCGHSILAINTILQL-NQRGQNVTVISNLPEDDIKQLEQRL-----GDNADVIPGDSNDSSVLKKAGIDRCRAILAL   78 (153)
T ss_dssp             CEEEECCSHHHHHHHHHH-HHTTCCEEEEECCCHHHHHHHHHHH-----CTTCEEEESCTTSHHHHHHHTTTTCSEEEEC
T ss_pred             EEEEECCCHHHHHHHHHH-HHcCCCEEEEeccchhHHHHHHHhh-----cCCcEEEEccCcchHHHHHhccccCCEEEEc
Confidence            489999999999999998 6789999999887653222111110     0111101000  0112222 25679999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEE
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILV  269 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lI  269 (342)
                      .+...  ..+.-....+.+.+...+|
T Consensus        79 ~~~d~--~n~~~~~~~r~~~~~~~ii  102 (153)
T d1id1a_          79 SDNDA--DNAFVVLSAKDMSSDVKTV  102 (153)
T ss_dssp             SSCHH--HHHHHHHHHHHHTSSSCEE
T ss_pred             cccHH--HHHHHHHHHHHhCCCCceE
Confidence            87533  3444444555555554333

>d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Escherichia coli [TaxId: 562]

Probab=94.76  E-value=0.0065  Score=49.19  Aligned_cols=99  Identities=19%  Similarity=0.161  Sum_probs=54.8

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhcCCcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~afg~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      -+|+|+|+ |+||+++++.+.+.-++++. ++++........   ..+.+   .+..........++++++..+|+|+--
T Consensus         5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~---d~~~~---~~~~~~~~~~~~~~~~~~~~~DViIDF   78 (162)
T d1diha1           5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGS---DAGEL---AGAGKTGVTVQSSLDAVKDDFDVFIDF   78 (162)
T ss_dssp             EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSC---CTTCS---SSSSCCSCCEESCSTTTTTSCSEEEEC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccc---hhhhh---hccccCCceeeccHHHHhcccceEEEe
Confidence            37999995 99999999986555688876 466554321100   00000   011122233456788889999999755


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCc
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGP  275 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~  275 (342)
                      .. .+.+...+.    ...+.|.-+|--+.|-
T Consensus        79 s~-p~~~~~~~~----~a~~~~~~~ViGTTG~  105 (162)
T d1diha1          79 TR-PEGTLNHLA----FCRQHGKGMVIGTTGF  105 (162)
T ss_dssp             SC-HHHHHHHHH----HHHHTTCEEEECCCCC
T ss_pred             cc-HHHHHHHHH----HHHhccceeEEecCCC
Confidence            32 112222221    1123455666666773

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.62  E-value=0.028  Score=45.59  Aligned_cols=95  Identities=19%  Similarity=0.176  Sum_probs=62.3

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc-cccccCCHHHHh-----hc
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV-TWKRASSMDEVL-----RE  236 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~ll-----~~  236 (342)
                      .|++|.|.|- |.+|+..++. ++..|++|++.++++++. + +..       ..+.... ........+.++     ..
T Consensus        29 ~G~~VlV~ga~ggvG~~aiql-ak~~Ga~vi~~~~~~~~~-~-~~~-------~~Ga~~vi~~~~~~~~~~~~~~~~~~G   98 (182)
T d1v3va2          29 GGETVLVSAAAGAVGSVVGQI-AKLKGCKVVGAAGSDEKI-A-YLK-------QIGFDAAFNYKTVNSLEEALKKASPDG   98 (182)
T ss_dssp             SSCEEEESSTTSHHHHHHHHH-HHHTTCEEEEEESSHHHH-H-HHH-------HTTCSEEEETTSCSCHHHHHHHHCTTC
T ss_pred             CCCEEEEEeCCCchhHHHHHH-HHccCCEEEEeCCCHHHH-H-HHH-------hhhhhhhcccccccHHHHHHHHhhcCC
Confidence            4889999998 6699999887 689999999998776542 1 111       1122211 111222233333     44


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRG  274 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG  274 (342)
                      .|+|+-|+.  .+    .-...++.++++..++.++..
T Consensus        99 vd~v~D~vG--~~----~~~~~~~~l~~~G~~v~~G~~  130 (182)
T d1v3va2          99 YDCYFDNVG--GE----FLNTVLSQMKDFGKIAICGAI  130 (182)
T ss_dssp             EEEEEESSC--HH----HHHHHGGGEEEEEEEEECCCG
T ss_pred             CceeEEecC--ch----hhhhhhhhccCCCeEEeecce
Confidence            899998885  22    125678999999999999753

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=94.56  E-value=0.039  Score=40.30  Aligned_cols=40  Identities=18%  Similarity=0.209  Sum_probs=32.6

Q ss_pred             CCCeEEEEecCHHHH-HHHHHHHhcCCcEEEEEcCCchhHHH
Q 019387          164 KGQTVGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQATRLE  204 (342)
Q Consensus       164 ~gktvgIvG~G~IG~-~vA~~l~~afg~~V~~~d~~~~~~~~  204 (342)
                      +.|++=|+|.|.+|. ++|+.| +..|.+|.++|.......+
T Consensus         7 ~~~~ihfiGigG~GMs~LA~~L-~~~G~~VsGSD~~~~~~~~   47 (96)
T d1p3da1           7 RVQQIHFIGIGGAGMSGIAEIL-LNEGYQISGSDIADGVVTQ   47 (96)
T ss_dssp             TCCEEEEETTTSTTHHHHHHHH-HHHTCEEEEEESCCSHHHH
T ss_pred             hCCEEEEEEECHHHHHHHHHHH-HhCCCEEEEEeCCCChhhh
Confidence            468899999999994 558887 7899999999987655443

>d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=94.48  E-value=0.99  Score=39.46  Aligned_cols=108  Identities=18%  Similarity=0.287  Sum_probs=67.7

Q ss_pred             ccCCCeEEEEec---CHHHHHHHHHHHhcC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcC
Q 019387          162 LLKGQTVGVIGA---GRIGSAYARMMVEGF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       162 ~L~gktvgIvG~---G~IG~~vA~~l~~af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~a  237 (342)
                      .+.|++|.++|-   +++..+.+..+ ..| |+++.+..|..-...+...+.    ....   ...+....++++.++++
T Consensus       151 ~l~~~~i~~vGD~~~~~v~~S~~~~~-~~~~~~~~~i~~P~~~~~~~~~~~~----~~~~---~~~~~~~~d~~~a~~~a  222 (310)
T d1tuga1         151 RLDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILDM----LDEK---GIAWSLHSSIEEVMAEV  222 (310)
T ss_dssp             CSSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHHHH----HHTT---TCCEEEESCGGGTTTTC
T ss_pred             CcccceEEEEeccccCcchHHHHHHH-HhccCceEEEeCCcccccchhcccc----cccc---cceeeeeechhhhccCC
Confidence            378999999997   78899998886 577 478888876432211111111    1111   12233457889999999


Q ss_pred             CEEEEcCCCCcc----------cccccCHHHHhcCCCCcEEEEcC-CCccc
Q 019387          238 DVISLHPVLDKT----------TYHLINKERLATMKKEAILVNCS-RGPVI  277 (342)
Q Consensus       238 DiV~l~~pl~~~----------t~~li~~~~l~~mk~ga~lINva-RG~~v  277 (342)
                      |+|...--..+.          ...-++.+.++.++++++|.-+. ||.=|
T Consensus       223 Dvvy~~~~~~e~~~~~~~~~~~~~~~v~~~~l~~a~~~~i~MHcLPRg~EI  273 (310)
T d1tuga1         223 DILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVDEI  273 (310)
T ss_dssp             SEEEECCCCGGGSCHHHHHTTTTSSCBCGGGGTTSCSSCEEECCSCCSSSB
T ss_pred             ceeeecccchhhhcccchhhhhhhhhhhHHHHhcCCCCcEEeeCCCCCCEe
Confidence            999754322211          12346778888888888877553 55433

>d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=94.48  E-value=0.066  Score=38.54  Aligned_cols=39  Identities=18%  Similarity=0.140  Sum_probs=31.9

Q ss_pred             CeEEEEecCHHHH-HHHHHHHhcCCcEEEEEcCCchhHHHH
Q 019387          166 QTVGVIGAGRIGS-AYARMMVEGFKMNLIYYDLYQATRLEK  205 (342)
Q Consensus       166 ktvgIvG~G~IG~-~vA~~l~~afg~~V~~~d~~~~~~~~~  205 (342)
                      .+|=++|.|.+|. .+|+.| +..|++|.++|.......+.
T Consensus         2 ~~ihfiGIgG~GMs~LA~~L-~~~G~~VsGSD~~~~~~t~~   41 (89)
T d1j6ua1           2 MKIHFVGIGGIGMSAVALHE-FSNGNDVYGSNIEETERTAY   41 (89)
T ss_dssp             CEEEEETTTSHHHHHHHHHH-HHTTCEEEEECSSCCHHHHH
T ss_pred             cEEEEEeECHHHHHHHHHHH-HhCCCeEEEEeCCCChhHHH
Confidence            5788999999998 668886 79999999999887654443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=94.44  E-value=0.097  Score=42.08  Aligned_cols=37  Identities=19%  Similarity=0.188  Sum_probs=32.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~  201 (342)
                      .|.+|.|+|.|.+|...++.+ +++|+ +|++.|+..++
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~a-k~~G~~~Vi~~d~~~~k   64 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGC-KAAGASRIIGVGTHKDK   64 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEECCCchhHHHHHHH-HHcCCceeeccCChHHH
Confidence            588999999999999999985 88886 78899987754

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=94.36  E-value=0.025  Score=45.54  Aligned_cols=38  Identities=13%  Similarity=0.035  Sum_probs=31.4

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhH
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATR  202 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~  202 (342)
                      .|++|.|.|- |.+|+.+++. ++.+|++|++.+++.++.
T Consensus        28 ~g~~Vlv~ga~g~vG~~~iql-ak~~Ga~Vi~~~~s~~k~   66 (179)
T d1qora2          28 PDEQFLFHAAAGGVGLIACQW-AKALGAKLIGTVGTAQKA   66 (179)
T ss_dssp             TTCEEEESSTTBHHHHHHHHH-HHHHTCEEEEEESSHHHH
T ss_pred             CCCEEEEEccccccchHHHHH-HHHhCCeEeecccchHHH
Confidence            4889999955 4599999998 589999999999887653

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.25  E-value=0.027  Score=42.61  Aligned_cols=34  Identities=12%  Similarity=0.385  Sum_probs=30.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      .++|.|||-|.||-++|..| ..+|.+|..+++..
T Consensus        22 p~~v~IiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          22 SKKIGIVGSGYIAVELINVI-KRLGIDSYIFARGN   55 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HTTTCEEEEECSSS
T ss_pred             CCEEEEECCchHHHHHHHHH-Hhccccceeeehhc
Confidence            47999999999999999998 69999999998765

>d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Hypothetical protein PH1109
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.15  E-value=0.061  Score=42.03  Aligned_cols=102  Identities=10%  Similarity=0.135  Sum_probs=68.8

Q ss_pred             CCCeEEEEec----CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          164 KGQTVGVIGA----GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       164 ~gktvgIvG~----G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .-|+|+|||.    |+.|..+++.| +.+|.+|+.++|....-                   .+...+.+++++-..-|+
T Consensus        18 ~~ksIAVVGaS~~~~~~g~~v~~~L-~~~g~~v~pVnP~~~~i-------------------~G~~~~~sl~dlp~~iD~   77 (139)
T d2d59a1          18 RYKKIALVGASPKPERDANIVMKYL-LEHGYDVYPVNPKYEEV-------------------LGRKCYPSVLDIPDKIEV   77 (139)
T ss_dssp             HCCEEEEETCCSCTTSHHHHHHHHH-HHTTCEEEEECTTCSEE-------------------TTEECBSSGGGCSSCCSE
T ss_pred             cCCeEEEEeecCCCCCchHHHHHHH-HHCCCEEEEECCccccc-------------------CCCcccccccccCccceE
Confidence            4679999996    57999999997 78999999998864321                   233456789998888999


Q ss_pred             EEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCce
Q 019387          240 ISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMF  292 (342)
Q Consensus       240 V~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~  292 (342)
                      +++++|. +.+..++.+- . .+...++++..|   ..+++. .+.+++..+.
T Consensus        78 v~i~vp~-~~~~~~~~e~-~-~~g~k~v~~~~G---~~~ee~-~~~a~~~gi~  123 (139)
T d2d59a1          78 VDLFVKP-KLTMEYVEQA-I-KKGAKVVWFQYN---TYNREA-SKKADEAGLI  123 (139)
T ss_dssp             EEECSCH-HHHHHHHHHH-H-HHTCSEEEECTT---CCCHHH-HHHHHHTTCE
T ss_pred             EEEEeCH-HHHHHHHHHH-H-HhCCCEEEEecc---ccCHHH-HHHHHHCCCE
Confidence            9999983 2333444332 2 345557777665   345554 4444444453

>d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: CoA-binding domain
domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.11  E-value=0.029  Score=43.39  Aligned_cols=108  Identities=16%  Similarity=0.181  Sum_probs=69.4

Q ss_pred             ccCCCeEEEEec----CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc
Q 019387          162 LLKGQTVGVIGA----GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE  236 (342)
Q Consensus       162 ~L~gktvgIvG~----G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~  236 (342)
                      -+.-++|.|||.    |..|..+.+.| +..| -+|+.++|.....                   .+...+.+++++-..
T Consensus         5 lf~PksIAVVGaS~~~~~~g~~v~~~L-~~~~~g~v~pVnP~~~~i-------------------~G~~~y~sl~dlp~~   64 (129)
T d2csua1           5 FFNPKGIAVIGASNDPKKLGYEVFKNL-KEYKKGKVYPVNIKEEEV-------------------QGVKAYKSVKDIPDE   64 (129)
T ss_dssp             TTSCSEEEEETCCSCTTSHHHHHHHHH-TTCCSSEEEEECSSCSEE-------------------TTEECBSSTTSCSSC
T ss_pred             hCCCCeEEEEccCCCCCCcHHHHHHHH-HHcCCCcEEEeccCcccc-------------------CCeEeecchhhcCCC
Confidence            356789999996    89999999998 5544 6999998865321                   233456788888888


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-----cCHHHHHHHHHcCCc
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-----IDEVALVEHLKQNPM  291 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-----vd~~aL~~aL~~g~i  291 (342)
                      -|++++++|. +.+..++.+- .+.=-++++++.-+-++.     -.++.|.+..++..+
T Consensus        65 vDlvvi~vp~-~~~~~~~~~~-~~~g~~~~vi~s~Gf~e~~~~~~~~~~~l~~~a~~~gi  122 (129)
T d2csua1          65 IDLAIIVVPK-RFVKDTLIQC-GEKGVKGVVIITAGFGETGEEGKREEKELVEIAHKYGM  122 (129)
T ss_dssp             CSEEEECSCH-HHHHHHHHHH-HHHTCCEEEECCCSSTTSCHHHHHHHHHHHHHHHHHTC
T ss_pred             CceEEEecCh-HHhHHHHHHH-HHcCCCEEEEecccccccchhhHHHHHHHHHHHHHcCC
Confidence            9999999993 4555555332 222233455554444443     223445555555434

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=94.03  E-value=0.027  Score=43.05  Aligned_cols=91  Identities=13%  Similarity=0.176  Sum_probs=50.4

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHH----hhcCCEEE
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEV----LREADVIS  241 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l----l~~aDiV~  241 (342)
                      |.+-|+|+|.+|+.+++.| ++.+  |.+.+..+... +...        ..+...... ...+.+-+    +.+|+.++
T Consensus         1 kHivI~G~g~~g~~l~~~L-~~~~--i~vi~~d~~~~-~~~~--------~~~~~~i~G-d~~~~~~L~~a~i~~A~~vi   67 (129)
T d2fy8a1           1 RHVVICGWSESTLECLREL-RGSE--VFVLAEDENVR-KKVL--------RSGANFVHG-DPTRVSDLEKANVRGARAVI   67 (129)
T ss_dssp             CCEEEESCCHHHHHHHHTS-CGGG--EEEEESCTTHH-HHHH--------HTTCEEEES-CTTSHHHHHHTTCTTCSEEE
T ss_pred             CEEEEECCCHHHHHHHHHH-cCCC--CEEEEcchHHH-HHHH--------hcCcccccc-ccCCHHHHHHhhhhcCcEEE
Confidence            4588999999999999997 6655  45555554432 1111        111111101 11222222    57799999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCc-EEEEc
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEA-ILVNC  271 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga-~lINv  271 (342)
                      ++.+..  ..+++-....+.+.|.. +++-+
T Consensus        68 ~~~~~d--~~n~~~~~~~r~~~~~~~iia~~   96 (129)
T d2fy8a1          68 VNLESD--SETIHCILGIRKIDESVRIIAEA   96 (129)
T ss_dssp             ECCSSH--HHHHHHHHHHHHHCSSSCEEEEC
T ss_pred             Eeccch--hhhHHHHHHHHHHCCCceEEEEE
Confidence            988753  34444445556666654 44443

>d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=94.03  E-value=0.23  Score=38.84  Aligned_cols=111  Identities=23%  Similarity=0.312  Sum_probs=57.7

Q ss_pred             CeEEEEec-CHHHHHHHHHHHh--cC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          166 QTVGVIGA-GRIGSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~--af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      |+|||||- |.+|+++.++|..  .| -.++..+..+......-      .+    ...........+ .+.++++|+++
T Consensus         2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~------~~----~~~~~~~~~~~~-~~~~~~~DivF   70 (146)
T d1t4ba1           2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAP------SF----GGTTGTLQDAFD-LEALKALDIIV   70 (146)
T ss_dssp             CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCC------GG----GTCCCBCEETTC-HHHHHTCSEEE
T ss_pred             cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccc------cc----cCCceeeecccc-hhhhhcCcEEE
Confidence            58999998 9999999976533  22 33666554433211000      00    000000111112 23568999999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcc-----------cCHHHHHHHHHcCC
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPV-----------IDEVALVEHLKQNP  290 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~-----------vd~~aL~~aL~~g~  290 (342)
                      +|+|... .+.+  ...+..-+.+.++|+.+..-=           |+.+.|.+++++|.
T Consensus        71 ~a~~~~~-s~~~--~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g~  127 (146)
T d1t4ba1          71 TCQGGDY-TNEI--YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNGI  127 (146)
T ss_dssp             ECSCHHH-HHHH--HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             EecCchH-HHHh--hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcCC
Confidence            9998432 1111  111222233356777663322           35667888887653

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.01  E-value=0.03  Score=42.65  Aligned_cols=34  Identities=15%  Similarity=0.310  Sum_probs=30.7

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      +++.|||-|.||-++|..| ..+|++|..+++.+.
T Consensus        24 ~~~vIiG~G~ig~E~A~~l-~~lG~~Vtii~~~~~   57 (122)
T d1v59a2          24 KRLTIIGGGIIGLEMGSVY-SRLGSKVTVVEFQPQ   57 (122)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CeEEEECCCchHHHHHHHH-HhhCcceeEEEeccc
Confidence            6999999999999999998 689999999987653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=93.89  E-value=0.031  Score=41.98  Aligned_cols=35  Identities=20%  Similarity=0.283  Sum_probs=31.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .+++.|||-|.||-++|..| ..+|.+|..+.+.+.
T Consensus        22 p~~v~IiGgG~ig~E~A~~l-~~~G~~Vtlve~~~~   56 (117)
T d1ebda2          22 PKSLVVIGGGYIGIELGTAY-ANFGTKVTILEGAGE   56 (117)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CCeEEEECCCccceeeeeee-cccccEEEEEEecce
Confidence            37999999999999999997 689999999987653

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=93.85  E-value=0.086  Score=45.77  Aligned_cols=40  Identities=10%  Similarity=0.213  Sum_probs=35.4

Q ss_pred             cccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          161 NLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ..|.||++.|-| -|.||+++|+.|+ .-|++|++.+++...
T Consensus        21 ~~l~gK~alITGas~GIG~aiA~~la-~~Ga~Vii~~r~~~~   61 (294)
T d1w6ua_          21 NSFQGKVAFITGGGTGLGKGMTTLLS-SLGAQCVIASRKMDV   61 (294)
T ss_dssp             TTTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHH
Confidence            589999999998 6899999999985 789999999988653

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=93.84  E-value=0.13  Score=41.02  Aligned_cols=38  Identities=21%  Similarity=0.275  Sum_probs=32.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR  202 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~  202 (342)
                      .|.+|.|+|.|.+|...+..+ +.+|+ +|++.|+++++.
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~-~~~g~~~Vi~~~~~~~k~   66 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGC-KAAGAARIIGVDINKDKF   66 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH
T ss_pred             CCCEEEEECCCCcHHHHHHHH-HHcCCceEEeecCcHHHH
Confidence            588999999999999999986 68875 888999887653

>d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Escherichia coli [TaxId: 562]

Probab=93.79  E-value=0.099  Score=41.48  Aligned_cols=105  Identities=18%  Similarity=0.334  Sum_probs=65.3

Q ss_pred             cCCCeEEEEec---CHHHHHHHHHHHhcCC-cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCC
Q 019387          163 LKGQTVGVIGA---GRIGSAYARMMVEGFK-MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       163 L~gktvgIvG~---G~IG~~vA~~l~~afg-~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aD  238 (342)
                      |.|.+|++||=   |++.++++..+ ..|| ..+++..|......+....    +....+   ..+....++++++.++|
T Consensus         2 l~gl~i~~vGD~~nsrv~~Sli~~l-~~~~~~~~~~~~P~~~~~~~~~~~----~~~~~~---~~~~~~~d~~~a~~~aD   73 (160)
T d1ekxa2           2 LDNLHVAMVGDLKYGRTVHSLTQAL-AKFDGNRFYFIAPDALAMPQYILD----MLDEKG---IAWSLHSSIEEVMAEVD   73 (160)
T ss_dssp             SSSCEEEEESCTTTCHHHHHHHHHH-TTSSSCEEEEECCGGGCCCHHHHH----HHHHTT---CCEEECSCSTTTGGGCS
T ss_pred             CCCCEEEEEcCCCccHHHHHHHHHH-HHcCCCeEEeeccchhhhhHHHHH----HHhhhc---cccccccCHHHHhCcCc
Confidence            67999999995   77999999986 6886 4556665543221111111    111112   12234568899999999


Q ss_pred             EEEEcCCCCcc----------cccccCHHHHhcCCCCcEEEEcC-CCc
Q 019387          239 VISLHPVLDKT----------TYHLINKERLATMKKEAILVNCS-RGP  275 (342)
Q Consensus       239 iV~l~~pl~~~----------t~~li~~~~l~~mk~ga~lINva-RG~  275 (342)
                      +|...-...+.          ....++++.++.++++++|--+. ||.
T Consensus        74 vvy~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcLPRg~  121 (160)
T d1ekxa2          74 ILYMTRVQKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPLPRVD  121 (160)
T ss_dssp             EEEECCCCGGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCSCCSS
T ss_pred             eEEeecccccccchHHHHHHHHHhhccHHHHHhcCcceeeecCCCcCC
Confidence            99765333221          22344677888888888887764 443

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=93.71  E-value=0.031  Score=48.29  Aligned_cols=44  Identities=16%  Similarity=0.185  Sum_probs=35.5

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH
Q 019387          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  205 (342)
Q Consensus       161 ~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~  205 (342)
                      .+|.||++.|-|- +.||+++|+.|+ .-|++|++.+++.+...+.
T Consensus         3 ~dL~gK~alITGas~GIG~aia~~la-~~G~~Vv~~~r~~~~~~~~   47 (261)
T d1geea_           3 KDLEGKVVVITGSSTGLGKSMAIRFA-TEKAKVVVNYRSKEDEANS   47 (261)
T ss_dssp             GGGTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEeCCcHHHHHH
Confidence            3689999999985 689999999985 6799999998876544333

>d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Maltose-6'-phosphate glucosidase GlvA
species: Bacillus subtilis [TaxId: 1423]

Probab=93.70  E-value=0.078  Score=42.71  Aligned_cols=78  Identities=14%  Similarity=0.252  Sum_probs=45.4

Q ss_pred             CeEEEEecCHHHHHHH--HHHHh--cC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          166 QTVGVIGAGRIGSAYA--RMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA--~~l~~--af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      -+|.|||-|.+|...+  ..+++  .| +-++..+|..++. .+............ ...+.......+..|.++.||+|
T Consensus         4 ~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~d~~eal~~AD~V   81 (167)
T d1u8xx1           4 FSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKER-QDRIAGACDVFIRE-KAPDIEFAATTDPEEAFTDVDFV   81 (167)
T ss_dssp             EEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHH-HHHHHHHHHHHHHH-HCTTSEEEEESCHHHHHSSCSEE
T ss_pred             ceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhH-HHHHHHHHHHHHHH-hCCCcceEecCChhhccCCCCEE
Confidence            4799999999876533  33321  22 2489999988754 22111111111111 11223334456889999999999


Q ss_pred             EEcCC
Q 019387          241 SLHPV  245 (342)
Q Consensus       241 ~l~~p  245 (342)
                      +++.-
T Consensus        82 vitag   86 (167)
T d1u8xx1          82 MAHIR   86 (167)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            99874

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=93.70  E-value=0.047  Score=47.19  Aligned_cols=46  Identities=20%  Similarity=0.135  Sum_probs=37.5

Q ss_pred             cccccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH
Q 019387          159 VGNLLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK  205 (342)
Q Consensus       159 ~~~~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~  205 (342)
                      ...+|.||++.|-| -+.||+++|+.|+ .-|++|++.+++..+..+.
T Consensus        12 ~~~sL~gK~~lITGas~GIG~aia~~la-~~Ga~Vvi~~~~~~~~~~~   58 (272)
T d1g0oa_          12 QSASLEGKVALVTGAGRGIGREMAMELG-RRGCKVIVNYANSTESAEE   58 (272)
T ss_dssp             GGGCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHHHHHH
T ss_pred             CCcCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCchHHHHH
Confidence            34579999999999 7899999999985 7799999988776554443

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.54  E-value=0.041  Score=41.34  Aligned_cols=34  Identities=26%  Similarity=0.617  Sum_probs=30.8

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      +++.|||-|.+|-++|..| +.+|.+|..+++.+.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l-~~~G~~Vtlve~~~~   55 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVI-NGLGAKTHLFEMFDA   55 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             CEEEEECCChhhHHHHHHh-hccccEEEEEeecch
Confidence            6899999999999999997 689999999988753

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.52  E-value=0.094  Score=45.00  Aligned_cols=38  Identities=26%  Similarity=0.301  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      +|+||++.|.| -+.||+++|+.|+ .-|++|+..+++++
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la-~~G~~V~i~~r~~~   41 (258)
T d1ae1a_           3 SLKGTTALVTGGSKGIGYAIVEELA-GLGARVYTCSRNEK   41 (258)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            58999999999 5679999999984 78999999998864

>d1yovb1 c.111.1.2 (B:12-437) UBA3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Ubiquitin activating enzymes (UBA)
domain: UBA3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.50  E-value=0.036  Score=51.54  Aligned_cols=100  Identities=18%  Similarity=0.121  Sum_probs=59.4

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh------------------HHHHHHhhhhhhhhccCCCCc
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT------------------RLEKFVTAYGQFLKANGEQPV  222 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~------------------~~~~~~~~~~~~~~~~~~~~~  222 (342)
                      .|.+++|.|||+|.+|.++++.|+ ..|. ++..+|...-.                  +.+...+........-.....
T Consensus        34 ~l~~~kVlvvG~GglG~ei~k~L~-~~Gvg~i~lvD~D~Ve~sNL~RQflf~~~diG~~Ka~~a~~~l~~~np~v~i~~~  112 (426)
T d1yovb1          34 LLDTCKVLVIGAGGLGCELLKNLA-LSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPNCNVVPH  112 (426)
T ss_dssp             HHHHCCEEEECSSTTHHHHHHHHH-TTTCCCEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHHHHHHHHHHSTTCCCEEE
T ss_pred             HHhcCeEEEECCCHHHHHHHHHHH-HcCCCeEEEEECCCcchhhhcccccCChhHcCcHHHHHHHHHHHhhCCCCceEee
Confidence            368889999999999999999985 5566 67788864311                  000000000000000000000


Q ss_pred             cccccCCHHHHhhcCCEEEEcCCCCcccccccCHHHHhcCC
Q 019387          223 TWKRASSMDEVLREADVISLHPVLDKTTYHLINKERLATMK  263 (342)
Q Consensus       223 ~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~l~~mk  263 (342)
                      ...-.+.-++++.++|+|+.|+. +.+++..+|...+...+
T Consensus       113 ~~~i~~~~~~~~~~~DlVi~~~D-n~~aR~~in~~c~~l~k  152 (426)
T d1yovb1         113 FNKIQDFNDTFYRQFHIIVCGLD-SIIARRWINGMLISLLN  152 (426)
T ss_dssp             CSCGGGBCHHHHTTCSEEEECCS-CHHHHHHHHHHHHHTCC
T ss_pred             eccccchHHHHHHhcchheeccC-cHHHHHHHHHHHHHhhc
Confidence            00011223578899999999886 67889999988776544

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.052  Score=46.94  Aligned_cols=38  Identities=21%  Similarity=0.271  Sum_probs=32.9

Q ss_pred             CCCeEEEE--ecCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvgIv--G~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .||+|.||  |-+.||.++|+.|++..|.+|+.++++.+.
T Consensus         1 ~g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~   40 (275)
T d1wmaa1           1 SGIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTR   40 (275)
T ss_dssp             CCCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence            48999999  888999999999876568999999998764

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=93.45  E-value=0.047  Score=40.96  Aligned_cols=36  Identities=17%  Similarity=0.252  Sum_probs=32.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .+++|.|||-|.||-++|..| ..+|.+|..+.+.+.
T Consensus        21 ~~~~vvVvGgG~ig~E~A~~l-~~~g~~vt~i~~~~~   56 (121)
T d1mo9a2          21 PGSTVVVVGGSKTAVEYGCFF-NATGRRTVMLVRTEP   56 (121)
T ss_dssp             CCSEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSCT
T ss_pred             CCCEEEEECCCHHHHHHHHHH-HhcchhheEeeccch
Confidence            479999999999999999998 689999999987653

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=93.37  E-value=0.038  Score=45.15  Aligned_cols=106  Identities=12%  Similarity=0.086  Sum_probs=62.2

Q ss_pred             CCCeEEEE--ecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHH--HHhhhhhhhhccCCCCcc-c--cccCC----HHH
Q 019387          164 KGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEK--FVTAYGQFLKANGEQPVT-W--KRASS----MDE  232 (342)
Q Consensus       164 ~gktvgIv--G~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~--~~~~~----l~~  232 (342)
                      .|+++.|+  |-|.+|+...+. ++.+|++|++.-+..+...+.  +...+       +....- .  ....+    ..+
T Consensus        28 ~g~~vli~~ga~g~vG~~aiql-Ak~~Ga~vI~~v~~~~~~~~~~~~~~~l-------Gad~vi~~~~~~~~~~~~~v~~   99 (189)
T d1gu7a2          28 PGKDWFIQNGGTSAVGKYASQI-GKLLNFNSISVIRDRPNLDEVVASLKEL-------GATQVITEDQNNSREFGPTIKE   99 (189)
T ss_dssp             TTTCEEEESCTTSHHHHHHHHH-HHHHTCEEEEEECCCTTHHHHHHHHHHH-------TCSEEEEHHHHHCGGGHHHHHH
T ss_pred             CCCEEEEEeCCCchHHHHHHHH-HhhcCCeEEEEEecccccchHHhhhhhc-------cccEEEeccccchhHHHHHHHH
Confidence            47889998  679999999998 689999999875554332211  11111       111110 0  00111    222


Q ss_pred             Hh----hcCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC--Ccc--cCHHHHH
Q 019387          233 VL----READVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR--GPV--IDEVALV  283 (342)
Q Consensus       233 ll----~~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR--G~~--vd~~aL~  283 (342)
                      +.    ...|+++-|+. .+.     ....+..|+++..+|.++.  |..  ++...++
T Consensus       100 ~~~~~g~~vdvv~D~vg-~~~-----~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~  152 (189)
T d1gu7a2         100 WIKQSGGEAKLALNCVG-GKS-----STGIARKLNNNGLMLTYGGMSFQPVTIPTSLYI  152 (189)
T ss_dssp             HHHHHTCCEEEEEESSC-HHH-----HHHHHHTSCTTCEEEECCCCSSCCEEECHHHHH
T ss_pred             HHhhccCCceEEEECCC-cch-----hhhhhhhhcCCcEEEEECCccCCCccCcHHHHH
Confidence            22    23788888874 121     2567899999999999863  322  4555443

>d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Ornithine transcarbamoylase
species: Escherichia coli [TaxId: 562]

Probab=93.22  E-value=0.2  Score=40.58  Aligned_cols=107  Identities=14%  Similarity=0.102  Sum_probs=65.2

Q ss_pred             ccCCCeEEEEecC--HHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          162 LLKGQTVGVIGAG--RIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       162 ~L~gktvgIvG~G--~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      .+.|.+|++||=|  ++..+++..+ .-||+++.+..|..-...+.............   ........++++.+.++|+
T Consensus         2 ~~~~l~i~~vGD~~nnv~~Sli~~~-~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~---g~~~~~~~d~~~a~~~aDv   77 (183)
T d1duvg2           2 AFNEMTLVYAGDARNNMGNSMLEAA-ALTGLDLRLVAPQACWPEAALVTECRALAQQN---GGNITLTEDVAKGVEGADF   77 (183)
T ss_dssp             CGGGCEEEEESCTTSHHHHHHHHHH-HHHCCEEEEECCGGGCCCHHHHHHHHHHHHHT---TCEEEEESCHHHHHTTCSE
T ss_pred             CcCCCEEEEEcCCccHHHHHHHHHH-HHcCCEEEEEechHhhhhHHHHHHHHHHHHhc---CCceEEEechhhccccCCE
Confidence            4678999999955  7999999986 57999999988753211111111000011111   1223345789999999999


Q ss_pred             EEEcCCCCc----c----------cccccCHHHHhcCCCCcEEEEcC
Q 019387          240 ISLHPVLDK----T----------TYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       240 V~l~~pl~~----~----------t~~li~~~~l~~mk~ga~lINva  272 (342)
                      |..-.-...    +          ....++.......++.++|--+.
T Consensus        78 vyt~~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L  124 (183)
T d1duvg2          78 IYTDVWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL  124 (183)
T ss_dssp             EEECCSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred             EEEEehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence            976543211    0          12333445556678888887764

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.15  E-value=0.05  Score=41.40  Aligned_cols=33  Identities=15%  Similarity=0.153  Sum_probs=30.5

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      |++.|||-|.||-++|..| ..+|.+|..+.+..
T Consensus        23 k~vvIvGgG~iG~E~A~~l-~~~G~~Vtlv~~~~   55 (125)
T d3grsa2          23 GRSVIVGAGYIAVEMAGIL-SALGSKTSLMIRHD   55 (125)
T ss_dssp             SEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSS
T ss_pred             CEEEEEcCCccHHHHHHHH-hcCCcEEEEEeecc
Confidence            7999999999999999998 68999999998865

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.059  Score=46.47  Aligned_cols=41  Identities=24%  Similarity=0.354  Sum_probs=35.1

Q ss_pred             ccccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          160 GNLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ...|.||++.|.|-+. ||+++|+.|+ ..|++|+..+++.+.
T Consensus         9 ~~~L~GK~alITGassGIG~aiA~~la-~~G~~Vil~~r~~~~   50 (269)
T d1xu9a_           9 PEMLQGKKVIVTGASKGIGREMAYHLA-KMGAHVVVTARSKET   50 (269)
T ss_dssp             GGGGTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             ccccCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            3459999999999875 9999999985 689999999998653

>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Thermotoga maritima [TaxId: 2336]

Probab=92.99  E-value=0.42  Score=38.48  Aligned_cols=103  Identities=17%  Similarity=0.238  Sum_probs=61.2

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCc-h-hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ-A-TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      .+|||+|- |-.|+++.++|++-=..++.+.-.+. . .....   .+..+.   .   .......+.+++..++|++++
T Consensus         2 ikVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~---~~p~~~---~---~~~~~~~~~~~~~~~~dvvf~   72 (176)
T d1vkna1           2 IRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEE---IFPSTL---E---NSILSEFDPEKVSKNCDVLFT   72 (176)
T ss_dssp             EEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHH---HCGGGC---C---CCBCBCCCHHHHHHHCSEEEE
T ss_pred             eEEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccc---cCchhh---c---cccccccCHhHhccccceEEE
Confidence            37999995 99999999998543356776553222 1 11111   111110   0   011123567788889999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~  284 (342)
                      ++|-...      .+..... .+..+||.|-.-=.+....++
T Consensus        73 a~p~~~s------~~~~~~~-~~~~VIDlSadfRl~~~~~y~  107 (176)
T d1vkna1          73 ALPAGAS------YDLVREL-KGVKIIDLGADFRFDDPGVYR  107 (176)
T ss_dssp             CCSTTHH------HHHHTTC-CSCEEEESSSTTTCSSHHHHH
T ss_pred             ccccHHH------HHHHHhh-ccceEEecCccccccchhhHH
Confidence            9995432      3333333 588999998665565555554

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=92.93  E-value=0.076  Score=45.40  Aligned_cols=39  Identities=15%  Similarity=0.157  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      +|.||++.|-|-+ .||+++|+.|+ ..|++|+..+++.+.
T Consensus         2 ~l~gK~~lITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   41 (251)
T d1vl8a_           2 DLRGRVALVTGGSRGLGFGIAQGLA-EAGCSVVVASRNLEE   41 (251)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            5889999999975 59999999985 779999999988654

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.77  E-value=0.059  Score=40.63  Aligned_cols=34  Identities=24%  Similarity=0.381  Sum_probs=30.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      .+++.|||-|.||-++|..| ..+|++|..+.+..
T Consensus        22 p~~i~IiG~G~ig~E~A~~l-~~~G~~Vtiv~~~~   55 (119)
T d3lada2          22 PGKLGVIGAGVIGLELGSVW-ARLGAEVTVLEAMD   55 (119)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHH-HHcCCceEEEEeec
Confidence            47899999999999999998 68999999887654

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.72  E-value=0.042  Score=44.81  Aligned_cols=94  Identities=21%  Similarity=0.177  Sum_probs=60.1

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHHhcCCcE-EEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc-----C
Q 019387          165 GQTVGVIG-AGRIGSAYARMMVEGFKMN-LIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-----A  237 (342)
Q Consensus       165 gktvgIvG-~G~IG~~vA~~l~~afg~~-V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-----a  237 (342)
                      +++|.|.| -|.+|...++. ++.+|++ |++.+...+...... ..       .+....-.....++.+.+++     .
T Consensus        31 ~etVLI~gaaGgVG~~aiQl-ak~~Ga~~vi~~~~~~e~~~~l~-~~-------~gad~vi~~~~~~~~~~~~~~~~~Gv  101 (187)
T d1vj1a2          31 NQTMVVSGAAGACGSLAGQI-GHLLGCSRVVGICGTQEKCLFLT-SE-------LGFDAAVNYKTGNVAEQLREACPGGV  101 (187)
T ss_dssp             CCEEEESSTTSTTGGGHHHH-HHHTTCSEEEEEESSHHHHHHHH-HH-------SCCSEEEETTSSCHHHHHHHHCTTCE
T ss_pred             CCEEEEECCCchhhHHHHHH-HHHcCCcceecccchHHHHhhhh-hc-------ccceEEeeccchhHHHHHHHHhccCc
Confidence            57899999 59999999998 5899996 555565554432211 11       12221111223456666655     9


Q ss_pred             CEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          238 DVISLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       238 DiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      |+|+-++..  +    .-+..++.++++..++.++.
T Consensus       102 Dvv~D~vGg--~----~~~~~~~~l~~~G~iv~~G~  131 (187)
T d1vj1a2         102 DVYFDNVGG--D----ISNTVISQMNENSHIILCGQ  131 (187)
T ss_dssp             EEEEESSCH--H----HHHHHHTTEEEEEEEEEC--
T ss_pred             eEEEecCCc--h----hHHHHhhhccccccEEEecc
Confidence            999988852  2    23567899999999999874

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=92.64  E-value=0.037  Score=42.12  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=31.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .+++.|||-|.||-++|..+ ..+|++|..+.+.+.
T Consensus        25 p~~~viiG~G~iglE~A~~~-~~~G~~Vtvi~~~~~   59 (123)
T d1dxla2          25 PKKLVVIGAGYIGLEMGSVW-GRIGSEVTVVEFASE   59 (123)
T ss_dssp             CSEEEESCCSHHHHHHHHHH-HHHTCEEEEECSSSS
T ss_pred             CCeEEEEccchHHHHHHHHH-HhcCCeEEEEEEccc
Confidence            47999999999999999998 699999999987653

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.62  E-value=0.044  Score=41.67  Aligned_cols=32  Identities=16%  Similarity=0.210  Sum_probs=28.9

Q ss_pred             CeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCC
Q 019387          166 QTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLY  198 (342)
Q Consensus       166 ktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~  198 (342)
                      +++.|||-|.||-++|..| ..+|.+|..+.+.
T Consensus        21 ~~vvIIGgG~iG~E~A~~l-~~lG~~Vtii~~~   52 (122)
T d1h6va2          21 GKTLVVGASYVALECAGFL-AGIGLDVTVMVRS   52 (122)
T ss_dssp             CSEEEECCSHHHHHHHHHH-HHTTCCEEEEESS
T ss_pred             CeEEEECCCccHHHHHHHH-hhcCCeEEEEEec
Confidence            5899999999999999997 6999999988754

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.56  E-value=0.14  Score=39.76  Aligned_cols=31  Identities=29%  Similarity=0.552  Sum_probs=24.7

Q ss_pred             eEEEEe-cCHHHHHHHHHHHhcCCcEEE-EEcC
Q 019387          167 TVGVIG-AGRIGSAYARMMVEGFKMNLI-YYDL  197 (342)
Q Consensus       167 tvgIvG-~G~IG~~vA~~l~~afg~~V~-~~d~  197 (342)
                      +|+|+| .|+||+.+++.+.+.-++++. ++|+
T Consensus         1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~   33 (135)
T d1yl7a1           1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDA   33 (135)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECT
T ss_pred             CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence            689999 699999999986556688876 4554

>d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Galactose/lactose metabolism regulatory protein GAL80
species: Yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=92.55  E-value=0.17  Score=42.55  Aligned_cols=71  Identities=11%  Similarity=0.114  Sum_probs=43.0

Q ss_pred             CCeEEEEecCHHHHHH----HHHHHhcC--CcEEE-EEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhc-
Q 019387          165 GQTVGVIGAGRIGSAY----ARMMVEGF--KMNLI-YYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLRE-  236 (342)
Q Consensus       165 gktvgIvG~G~IG~~v----A~~l~~af--g~~V~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~-  236 (342)
                      --+|||||+|.+|..+    ...+ +..  +++++ ++|+.++.. +.+.+.|       +...  ...++++++++.. 
T Consensus        16 ~irvgiIG~G~~~~~~~~~h~~ai-~~~~~~~~ivav~d~~~~~~-~~~~~~~-------~~~~--~~~~~~~~~l~~~~   84 (237)
T d2nvwa1          16 PIRVGFVGLTSGKSWVAKTHFLAI-QQLSSQFQIVALYNPTLKSS-LQTIEQL-------QLKH--ATGFDSLESFAQYK   84 (237)
T ss_dssp             CEEEEEECCCSTTSHHHHTHHHHH-HHTTTTEEEEEEECSCHHHH-HHHHHHT-------TCTT--CEEESCHHHHHHCT
T ss_pred             CeEEEEEecCccccHHHHHHHHHH-HhcCCCeEEEEEEcCCHHHH-HHHHHhc-------cccc--ceeecchhhccccc
Confidence            3589999999855433    3333 333  67877 578876542 3322222       1111  2235799999864 


Q ss_pred             -CCEEEEcCCC
Q 019387          237 -ADVISLHPVL  246 (342)
Q Consensus       237 -aDiV~l~~pl  246 (342)
                       -|+|++|+|.
T Consensus        85 ~iD~V~i~tp~   95 (237)
T d2nvwa1          85 DIDMIVVSVKV   95 (237)
T ss_dssp             TCSEEEECSCH
T ss_pred             ccceeeccCCC
Confidence             6789999884

>d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: ATC-like
superfamily: Aspartate/ornithine carbamoyltransferase
family: Aspartate/ornithine carbamoyltransferase
domain: Aspartate carbamoyltransferase catalytic subunit
species: Bacillus subtilis [TaxId: 1423]

Probab=92.42  E-value=0.1  Score=41.17  Aligned_cols=63  Identities=24%  Similarity=0.352  Sum_probs=46.1

Q ss_pred             CCCeEEEEec---CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEE
Q 019387          164 KGQTVGVIGA---GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVI  240 (342)
Q Consensus       164 ~gktvgIvG~---G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV  240 (342)
                      .|.+|++||=   ++++++++..+ ..||+++....|..-..             .    ...+....++++.++++|+|
T Consensus         2 ~gl~i~~vGD~~~srv~~Sl~~~~-~~~g~~~~i~~P~~~~~-------------~----~~~~~~~~~~~ea~~~aDvi   63 (151)
T d2at2a2           2 KGLTVSIHGDIKHSRVARSNAEVL-TRLGARVLFSGPSEWQD-------------E----ENTFGTYVSMDEAVESSDVV   63 (151)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHH-HHcCCcccccCCchhhc-------------c----ccceeEEEechhccccCcee
Confidence            5889999996   68999999997 68999998877643110             0    11223446889999999999


Q ss_pred             EEcC
Q 019387          241 SLHP  244 (342)
Q Consensus       241 ~l~~  244 (342)
                      ...-
T Consensus        64 y~~r   67 (151)
T d2at2a2          64 MLLR   67 (151)
T ss_pred             eeeE
Confidence            6543

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=92.37  E-value=0.059  Score=42.25  Aligned_cols=36  Identities=19%  Similarity=0.299  Sum_probs=29.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhc-CCcEEEEEcCCc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEG-FKMNLIYYDLYQ  199 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~a-fg~~V~~~d~~~  199 (342)
                      .||+|.|||-|.+|-++|..|.+. ...+|+.+++.+
T Consensus         1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~   37 (186)
T d1fcda1           1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT   37 (186)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred             CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence            489999999999999999987432 346899998776

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=92.37  E-value=0.078  Score=40.14  Aligned_cols=35  Identities=14%  Similarity=0.190  Sum_probs=31.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      ++++.|||-|.+|-++|..| ...|.+|..+++.+.
T Consensus        30 ~~~vvIIGgG~iG~E~A~~l-~~~g~~Vtli~~~~~   64 (121)
T d1d7ya2          30 QSRLLIVGGGVIGLELAATA-RTAGVHVSLVETQPR   64 (121)
T ss_dssp             TCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSSS
T ss_pred             CCeEEEECcchhHHHHHHHh-hcccceEEEEeeccc
Confidence            68999999999999999998 688999999987764

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=92.36  E-value=0.056  Score=41.30  Aligned_cols=34  Identities=18%  Similarity=0.260  Sum_probs=30.9

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      .+++.|||-|.||-++|..+ ..+|.+|..+.+.+
T Consensus        26 p~~vvIiGgG~IG~E~A~~~-~~~G~~Vtive~~~   59 (125)
T d1ojta2          26 PGKLLIIGGGIIGLEMGTVY-STLGSRLDVVEMMD   59 (125)
T ss_dssp             CSEEEEESCSHHHHHHHHHH-HHHTCEEEEECSSS
T ss_pred             CCeEEEECCCHHHHHHHHHh-hcCCCEEEEEEeec
Confidence            47999999999999999998 68999999998765

>d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Helicobacter pylori [TaxId: 210]

Probab=92.31  E-value=0.094  Score=44.87  Aligned_cols=37  Identities=22%  Similarity=0.275  Sum_probs=32.0

Q ss_pred             cCCCeEEEEec-C--HHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          163 LKGQTVGVIGA-G--RIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       163 L~gktvgIvG~-G--~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      |.||++.|.|- |  .||.++|+.|+ .-|++|+..+++.+
T Consensus         3 L~gK~alITGaag~~GIG~AiA~~la-~~Ga~V~i~~r~~~   42 (274)
T d2pd4a1           3 LKGKKGLIVGVANNKSIAYGIAQSCF-NQGATLAFTYLNES   42 (274)
T ss_dssp             TTTCEEEEECCCSTTSHHHHHHHHHH-TTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHHHH-HCCCEEEEEeCCHH
Confidence            78999999996 4  49999999985 78999999988753

>d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=92.26  E-value=0.13  Score=42.31  Aligned_cols=105  Identities=14%  Similarity=0.201  Sum_probs=68.1

Q ss_pred             HHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE-EcCCCCcccccccCHH
Q 019387          179 AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS-LHPVLDKTTYHLINKE  257 (342)
Q Consensus       179 ~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~-l~~pl~~~t~~li~~~  257 (342)
                      ..++.| ...|.+|.+=.-....  ..|        .++.....+..-.++-++++.++|+|+ +..|...+    .+.+
T Consensus        21 ~~vkkl-~~~G~~V~vE~gaG~~--a~f--------sD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~   85 (194)
T d1l7da2          21 EVVKKL-VGLGFEVIVEQGAGVG--ASI--------TDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTD   85 (194)
T ss_dssp             HHHHHH-HHTTCEEEEETTTTGG--GTC--------CHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCC
T ss_pred             HHHHHH-HHCCCEEEEEcCcccc--cCC--------CHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchh
Confidence            445666 5789999874322211  000        000111122333467789999999885 55665332    2345


Q ss_pred             HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCC
Q 019387          258 RLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (342)
Q Consensus       258 ~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~  300 (342)
                      .++.||+|+++|..--  .....+++++|.+.++...++|...
T Consensus        86 ei~~lk~g~~li~~l~--p~~~~~~~~~l~~~~it~~a~e~ip  126 (194)
T d1l7da2          86 EVALIKEGAVLMCHLG--ALTNRPVVEALTKRKITAYAMELMP  126 (194)
T ss_dssp             GGGGSCTTCEEEEECC--GGGCHHHHHHHHHTTCEEEEGGGCC
T ss_pred             HhhhccCceEEEEecc--cccchhHHHHHHhcCceEEeeeccc
Confidence            7899999999998753  4566789999999999999998764

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=92.25  E-value=0.082  Score=40.02  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=31.3

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      .+|+|.|||-|.+|-++|..| ...|.+|+.+++.+
T Consensus        29 ~~k~vvViGgG~iG~E~A~~l-~~~g~~Vtlie~~~   63 (123)
T d1nhpa2          29 EVNNVVVIGSGYIGIEAAEAF-AKAGKKVTVIDILD   63 (123)
T ss_dssp             TCCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSS
T ss_pred             CCCEEEEECChHHHHHHHHHh-hccceEEEEEEecC
Confidence            478999999999999999997 58899999997765

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.21  E-value=0.26  Score=38.92  Aligned_cols=37  Identities=22%  Similarity=0.248  Sum_probs=30.5

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchh
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQAT  201 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~  201 (342)
                      .|.+|.|.|.|.+|...++.+ +.+|+ .|++.+++++.
T Consensus        28 ~G~tVlI~GaGGvG~~aiq~a-k~~G~~~vi~~~~~~~k   65 (176)
T d2fzwa2          28 PGSVCAVFGLGGVGLAVIMGC-KVAGASRIIGVDINKDK   65 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHHTCSEEEEECSCGGG
T ss_pred             CCCEEEEecchhHHHHHHHHH-HHHhcCceEEEcccHHH
Confidence            488999999999999999985 78886 67777776654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=92.16  E-value=0.075  Score=44.42  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=30.6

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      ||+|.|||-|.-|-..|..| +..|.+|.+++..+
T Consensus         1 ~KkV~IIGaG~aGL~aA~~L-a~~G~~V~vlE~~~   34 (373)
T d1seza1           1 AKRVAVIGAGVSGLAAAYKL-KIHGLNVTVFEAEG   34 (373)
T ss_dssp             CCEEEEECCSHHHHHHHHHH-HTTSCEEEEECSSS
T ss_pred             CCEEEEECcCHHHHHHHHHH-HhCCCCEEEEeCCC
Confidence            68999999999999999998 46799999998754

>d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative semialdehyde dehydrogenase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=92.06  E-value=0.37  Score=38.90  Aligned_cols=102  Identities=15%  Similarity=0.194  Sum_probs=54.9

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~afg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      .+|||||- |-.|+++.++|.+-=.+++.+. .++....  ...+.+.. ......    .......++.+.++|+++++
T Consensus         6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~--~~~~~~~~-~~~~~~----~~~~~~~~~~~~~~Dvvf~a   78 (183)
T d2cvoa1           6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGE--QFGSVFPH-LITQDL----PNLVAVKDADFSNVDAVFCC   78 (183)
T ss_dssp             EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTS--CHHHHCGG-GTTSCC----CCCBCGGGCCGGGCSEEEEC
T ss_pred             cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCC--cccccccc-cccccc----ccchhhhhhhhcccceeeec
Confidence            47999994 9999999999853235676654 3222211  11111110 100000    00112334567899999999


Q ss_pred             CCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHH
Q 019387          244 PVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEV  280 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~  280 (342)
                      +|-.      ...+....+.++...|+.+-+.-....
T Consensus        79 lp~~------~s~~~~~~l~~~~~~v~~~~~~~~~~~  109 (183)
T d2cvoa1          79 LPHG------TTQEIIKGLPQELKIVDLSADFRLRDI  109 (183)
T ss_dssp             CSSS------HHHHHHHTSCSSCEEEECSSTTTCSCH
T ss_pred             cccc------hHHHHHHHHHhcCcccccchhhhcccc
Confidence            9943      334555556556666666555444333

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=92.04  E-value=0.052  Score=43.62  Aligned_cols=36  Identities=11%  Similarity=0.295  Sum_probs=31.1

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcE-EEEEcCCch
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMN-LIYYDLYQA  200 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~-V~~~d~~~~  200 (342)
                      .+|+|.|||-|.+|-..|..| ...|++ |.++++...
T Consensus         3 ~~~kVaIIGaGpaGl~aA~~l-~~~G~~~V~v~E~~~~   39 (196)
T d1gtea4           3 YSAKIALLGAGPASISCASFL-ARLGYSDITIFEKQEY   39 (196)
T ss_dssp             GGCCEEEECCSHHHHHHHHHH-HHTTCCCEEEEESSSS
T ss_pred             CCCEEEEECChHHHHHHHHHH-HHCCCCeEEEEEecCc
Confidence            478999999999999999997 578984 989987654

>d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]

Probab=91.96  E-value=0.087  Score=44.82  Aligned_cols=41  Identities=20%  Similarity=0.215  Sum_probs=33.6

Q ss_pred             cCCCeEEEEec-CH--HHHHHHHHHHhcCCcEEEEEcCCchhHHH
Q 019387          163 LKGQTVGVIGA-GR--IGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (342)
Q Consensus       163 L~gktvgIvG~-G~--IG~~vA~~l~~afg~~V~~~d~~~~~~~~  204 (342)
                      |.||++.|.|. |.  ||.++|+.|+ .-|++|+..++...+..+
T Consensus         4 l~gK~~lItGaag~~GIG~aiA~~la-~~Ga~Vil~~~~~~~~~~   47 (268)
T d2h7ma1           4 LDGKRILVSGIITDSSIAFHIARVAQ-EQGAQLVLTGFDRLRLIQ   47 (268)
T ss_dssp             TTTCEEEECCCSSTTCHHHHHHHHHH-HTTCEEEEEECSCHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHH-HcCCEEEEEeCChHHHHH
Confidence            78999999996 54  9999999984 789999998877654333

>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.96  E-value=0.19  Score=40.47  Aligned_cols=110  Identities=13%  Similarity=0.163  Sum_probs=59.2

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcC-CcEEEEEcCCc--hhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGF-KMNLIYYDLYQ--ATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~af-g~~V~~~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .+|+|+| -|-.|+++.++|. .. .+++.......  ....+.....+.. .  .+..........+.+.....+|+++
T Consensus         2 ikVaIiGATGyvG~eLlrlL~-~HP~~ei~~l~~~s~~~~aGk~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~dvvf   77 (179)
T d2g17a1           2 LNTLIVGASGYAGAELVSYVN-RHPHMTITALTVSAQSNDAGKLISDLHPQ-L--KGIVDLPLQPMSDVRDFSADVDVVF   77 (179)
T ss_dssp             EEEEEETTTSHHHHHHHHHHH-HCTTEEEEEEEEETTCTTTTCBHHHHCGG-G--TTTCCCBEEEESCGGGTCTTCCEEE
T ss_pred             cEEEEECcccHHHHHHHHHHH-hCCCCceEeeEeecccccccccccccccc-c--ccccccccccchhhhhhhcccceee
Confidence            3799999 8999999999984 54 66765432111  1100000000000 0  0111111122234455567899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCCCcccCHHHHHH
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~~vd~~aL~~  284 (342)
                      +|+|....     .+..-...+.|..+||.+-.--.+....++
T Consensus        78 ~alp~~~s-----~~~~~~~~~~~~~vIDlSadfRl~~~~~~~  115 (179)
T d2g17a1          78 LATAHEVS-----HDLAPQFLQAGCVVFDLSGAFRVNDRAFYE  115 (179)
T ss_dssp             ECSCHHHH-----HHHHHHHHHTTCEEEECSSTTSSSCHHHHH
T ss_pred             ccccchhH-----HHHhhhhhhcCceeeccccccccccccccc
Confidence            99994211     112223345789999998666555554443

>d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=91.95  E-value=0.054  Score=42.90  Aligned_cols=92  Identities=20%  Similarity=0.275  Sum_probs=52.2

Q ss_pred             CCeEEEEec-CHHHHHHHHHHHhc-C-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          165 GQTVGVIGA-GRIGSAYARMMVEG-F-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvgIvG~-G~IG~~vA~~l~~a-f-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      |-+|||||- |-+|+++.++|.+. | -.++.++..+.... .        ....   ...........++.+.+.|+++
T Consensus         1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G-~--------~~~~---~~~~~~~~~~~~~~~~~~d~~f   68 (154)
T d2gz1a1           1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAG-K--------SLKF---KDQDITIEETTETAFEGVDIAL   68 (154)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTT-C--------EEEE---TTEEEEEEECCTTTTTTCSEEE
T ss_pred             CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEeccccccc-c--------cccc---cCCcccccccchhhhhhhhhhh
Confidence            458999998 99999999998532 2 34555554322110 0        0000   0001111223445667899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      +++|.. .+.    +......++|..+|+.|-
T Consensus        69 ~~~~~~-~s~----~~~~~~~~~~~~VIDlSs   95 (154)
T d2gz1a1          69 FSAGSS-TSA----KYAPYAVKAGVVVVDNTS   95 (154)
T ss_dssp             ECSCHH-HHH----HHHHHHHHTTCEEEECSS
T ss_pred             hccCcc-chh----hHHhhhccccceehhcCh
Confidence            999832 222    223334567899999863

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=91.94  E-value=0.13  Score=41.40  Aligned_cols=112  Identities=13%  Similarity=0.247  Sum_probs=59.3

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|||=|||+||+.+.|.+...-..+|.+.+.......-.+.-.|++..   |..+      .+.+   ..-+.+++    
T Consensus         3 kigINGFGRIGR~v~R~~~~~~~i~ivaINd~~~~~~~ayLl~yDSvh---G~~~------~~v~---~~~~~l~i----   66 (166)
T d1gado1           3 KVGINGFGRIGRIVFRAAQKRSDIEIVAINDLLDADYMAYMLKYDSTH---GRFD------GTVE---VKDGHLIV----   66 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSCHHHHHHHHHCCTTT---CSCS------SCEE---EETTEEEE----
T ss_pred             EEEEECCcHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHhhhheecCCC---CCcC------CeEE---EeCCEEEE----
Confidence            699999999999999986444468888766544333333333443221   1111      1111   12333333    


Q ss_pred             CcccccccCHHHHhcCC---CCc-EEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 019387          247 DKTTYHLINKERLATMK---KEA-ILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       247 ~~~t~~li~~~~l~~mk---~ga-~lINvaRG~~vd~~aL~~aL~~g~i~~aaL  296 (342)
                      +...-.+++....+.++   -|. ++|.+ .|.--+.+.+..-|+.| .....+
T Consensus        67 ng~~I~i~~~~~p~~i~W~~~gvDiViEc-TG~f~t~~~~~~hl~~g-akkVii  118 (166)
T d1gado1          67 NGKKIRVTAERDPANLKWDEVGVDVVAEA-TGLFLTDETARKHITAG-AKKVVM  118 (166)
T ss_dssp             TTEEEEEECCSSGGGGCHHHHTCSEEEEC-SSSCCSHHHHTHHHHTT-CSEEEE
T ss_pred             CCEEEEEEeCCChHHCCccccCCCEEEEc-cccccCHHHHHHHhcCC-CceEEe
Confidence            12233344333222222   233 45554 66667777787878765 554544

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=91.94  E-value=0.079  Score=40.00  Aligned_cols=35  Identities=17%  Similarity=0.117  Sum_probs=31.0

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      ++++.|||-|.+|-++|..| ..+|.+|..+++.+.
T Consensus        32 ~~~vvIiGgG~iG~E~A~~l-~~~g~~Vtlv~~~~~   66 (122)
T d1xhca2          32 SGEAIIIGGGFIGLELAGNL-AEAGYHVKLIHRGAM   66 (122)
T ss_dssp             HSEEEEEECSHHHHHHHHHH-HHTTCEEEEECSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHh-hcccceEEEEecccc
Confidence            46899999999999999998 689999999987653

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.93  E-value=0.17  Score=42.90  Aligned_cols=39  Identities=28%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++.|-|-+ .||+++|+.|+ .-|++|+..|++.+.
T Consensus         4 ~L~GK~~lITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   43 (244)
T d1pr9a_           4 FLAGRRVLVTGAGKGIGRGTVQALH-ATGARVVAVSRTQAD   43 (244)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHH
Confidence            5899999999876 59999999985 789999999987653

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.83  E-value=0.055  Score=45.85  Aligned_cols=40  Identities=25%  Similarity=0.346  Sum_probs=34.2

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ++|+||++.|-|-+. ||+++|+.|+ .-|++|+..+++.+.
T Consensus         1 ~slkGKvalITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   41 (248)
T d2o23a1           1 RSVKGLVAVITGGASGLGLATAERLV-GQGASAVLLDLPNSG   41 (248)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEECTTSS
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCChHH
Confidence            368999999999765 9999999985 789999999887643

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.40  E-value=0.092  Score=44.75  Aligned_cols=40  Identities=28%  Similarity=0.451  Sum_probs=35.1

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ..|.||++.|-|.+. ||+++|+.|+ ..|++|+..|++.+.
T Consensus         3 ~~l~Gkv~lITGas~GIG~~ia~~la-~~G~~V~l~~r~~~~   43 (244)
T d1yb1a_           3 KSVTGEIVLITGAGHGIGRLTAYEFA-KLKSKLVLWDINKHG   43 (244)
T ss_dssp             CCCTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            469999999999876 9999999985 779999999998753

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=91.38  E-value=0.087  Score=39.25  Aligned_cols=35  Identities=17%  Similarity=0.213  Sum_probs=31.0

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .+++.|||-|.+|-++|..| ..+|.+|..+++.+.
T Consensus        21 p~~vvIiGgG~~G~E~A~~l-~~~g~~Vtlve~~~~   55 (115)
T d1lvla2          21 PQHLVVVGGGYIGLELGIAY-RKLGAQVSVVEARER   55 (115)
T ss_dssp             CSEEEEECCSHHHHHHHHHH-HHHTCEEEEECSSSS
T ss_pred             CCeEEEECCCHHHHHHHHHH-hhcccceEEEeeecc
Confidence            47999999999999999997 689999999987653

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.37  E-value=0.21  Score=42.23  Aligned_cols=39  Identities=18%  Similarity=0.208  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++.|-|-+ .||+++|+.|+ ..|++|+..+++.+.
T Consensus         2 dl~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (242)
T d1cyda_           2 NFSGLRALVTGAGKGIGRDTVKALH-ASGAKVVAVTRTNSD   41 (242)
T ss_dssp             CCTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            4789999999975 69999999985 789999999987643

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.30  E-value=0.8  Score=35.89  Aligned_cols=38  Identities=26%  Similarity=0.274  Sum_probs=31.2

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCCchhH
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLYQATR  202 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~~~~~  202 (342)
                      .|.+|.|+|.|.+|...+..+ +.+|. +|++.|+++++.
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~-~~~g~~~Vi~~~~~~~rl   66 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGC-HSAGAKRIIAVDLNPDKF   66 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCSEEEEECSCGGGH
T ss_pred             CCCEEEEEecCCccchHHHHH-HHHhhchheeecchHHHH
Confidence            588999999999999999886 55555 788999887643

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=91.04  E-value=0.18  Score=43.03  Aligned_cols=39  Identities=26%  Similarity=0.318  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++.|-|-+ .||+++|+.|+ ..|++|+..|++.+.
T Consensus         2 rL~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (260)
T d1zema1           2 KFNGKVCLVTGAGGNIGLATALRLA-EEGTAIALLDMNREA   41 (260)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            4789999999985 59999999985 789999999987643

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=90.97  E-value=2.2  Score=33.69  Aligned_cols=112  Identities=13%  Similarity=0.034  Sum_probs=70.4

Q ss_pred             CceEEEEeC---CCCc---hHHHHHHHhCCCeEEEecCCCCCCCHHHHHHHhC-CCceEEEecCCCCc----cHHHHHHh
Q 019387           14 GKYRVVSTK---PMPG---TRWINLLIEQDCRVEICTQKKTILSVEDIIALIG-DKCDGVIGQLTEDW----GETLFAAL   82 (342)
Q Consensus        14 ~~~~vl~~~---~~~~---~~~~~~l~~~~~~v~~~~~~~~~~~~~e~~~~~~-~~~d~vi~~~~~~~----~~e~l~~l   82 (342)
                      +++|||+..   ..|+   ...-..|+..|++|....   ...+++++.+.+. .++|+|.......-    -+++.+.|
T Consensus        36 r~pkVlla~~g~D~Hd~G~~~va~~l~~~G~eVi~lg---~~~~~e~iv~aa~~~~advI~iSs~~~~~~~~~~~l~~~L  112 (168)
T d7reqa2          36 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGP---LFQTPEETARQAVEADVHVVGVSSLAGGHLTLVPALRKEL  112 (168)
T ss_dssp             SCCEEEEECBTTCCCCHHHHHHHHHHHHTTCEEEECC---TTBCHHHHHHHHHHHTCSEEEEEECSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEeCCccHHHHHHHHHHHHHHhCCcceecCC---CcCcHHHHHHHHHccCCCEEEEecCcccchHHHHHHHHHH
Confidence            467887753   3333   223456788999997643   2457888876443 36898887643222    24555666


Q ss_pred             hccCC-ceEEEccccCCccChhHHHhCCeeEecCCCCCchhHHHHHH
Q 019387           83 SRAGG-KAFSNMAVGYNNVDVNAANKYGIAVGNTPGVLTETTAELAA  128 (342)
Q Consensus        83 ~~l~~-k~i~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~l  128 (342)
                      .+.|. ++....|--+-.-|.+.+++.|+.-+..||.+...++...+
T Consensus       113 ~~~g~~~v~VivGG~ip~~d~~~l~~~Gv~~iF~pgt~~~e~a~~~~  159 (168)
T d7reqa2         113 DKLGRPDILITVGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLV  159 (168)
T ss_dssp             HHTTCTTSEEEEEESCCGGGHHHHHHHTEEEEECTTCCHHHHHHHHH
T ss_pred             HhcCCCCeEEEEeCCCCHHHHHHHHhCCCCEEECcCCCHHHHHHHHH
Confidence            66653 34444443356778888999999988899976555544443

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.86  E-value=0.11  Score=44.26  Aligned_cols=40  Identities=23%  Similarity=0.301  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ..|.||++.|-|- +.||+++|+.|+ .-|++|+..|++.+.
T Consensus         2 ~rl~GK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   42 (250)
T d1ydea1           2 TRYAGKVVVVTGGGRGIGAGIVRAFV-NSGARVVICDKDESG   42 (250)
T ss_dssp             CTTTTCEEEEETCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            4689999999996 689999999985 679999999987643

>d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]

Probab=90.72  E-value=0.57  Score=37.58  Aligned_cols=113  Identities=17%  Similarity=0.083  Sum_probs=64.7

Q ss_pred             CCeEEEEec-CHHHHHHHHHHHhc--CCc----EEEEEcCCchhH-HHHHHhhhhhhhhccCC-CCccccccCCHHHHhh
Q 019387          165 GQTVGVIGA-GRIGSAYARMMVEG--FKM----NLIYYDLYQATR-LEKFVTAYGQFLKANGE-QPVTWKRASSMDEVLR  235 (342)
Q Consensus       165 gktvgIvG~-G~IG~~vA~~l~~a--fg~----~V~~~d~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~ll~  235 (342)
                      -.+|.|+|- |.||+.++-+|+.+  ||.    .+..+|...... .+....    .+..-.. ........++..+.++
T Consensus        24 ~~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~m----dl~d~a~~~~~~~~~~~~~~~~~~   99 (175)
T d7mdha1          24 LVNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAM----ELEDSLYPLLREVSIGIDPYEVFE   99 (175)
T ss_dssp             CEEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHH----HHHTTTCTTEEEEEEESCHHHHTT
T ss_pred             CcEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhh----hhcccccccccCccccccchhhcc
Confidence            348999995 99999999887643  554    666778765322 121110    0111000 0112234568889999


Q ss_pred             cCCEEEEcCCCCcccccc------------cC--HHHHhc-CCCCcEEEEcCCCcccCHHHHHH
Q 019387          236 EADVISLHPVLDKTTYHL------------IN--KERLAT-MKKEAILVNCSRGPVIDEVALVE  284 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~l------------i~--~~~l~~-mk~ga~lINvaRG~~vd~~aL~~  284 (342)
                      +||+|++.... +...+.            +-  .+.+.. .+++++++=++.  .+|.-+++.
T Consensus       100 ~aDvVvi~ag~-~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~N--Pvd~~t~ia  160 (175)
T d7mdha1         100 DVDWALLIGAK-PRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVGN--PCNTNALIC  160 (175)
T ss_dssp             TCSEEEECCCC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHHHH
T ss_pred             CCceEEEeecc-CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEecC--cHHHHHHHH
Confidence            99999888633 222222            21  123334 466776766654  588777663

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=90.63  E-value=0.16  Score=38.97  Aligned_cols=36  Identities=25%  Similarity=0.258  Sum_probs=31.9

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .++++.|||-|.+|-++|..| ...|.+|..+++.+.
T Consensus        34 ~~k~v~VIGgG~iG~E~A~~l-~~~g~~Vtvie~~~~   69 (133)
T d1q1ra2          34 ADNRLVVIGGGYIGLEVAATA-IKANMHVTLLDTAAR   69 (133)
T ss_dssp             TTCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             cCCEEEEECCchHHHHHHHHH-HhhCcceeeeeeccc
Confidence            368999999999999999997 688999999988754

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.46  E-value=0.45  Score=40.37  Aligned_cols=38  Identities=24%  Similarity=0.234  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .|.||++.|-|-+ .||+++|+.|+ .-|++|++.+++.+
T Consensus         7 ~lk~Kv~lITGas~GIG~aiA~~la-~~G~~Vv~~~r~~~   45 (257)
T d1xg5a_           7 RWRDRLALVTGASGGIGAAVARALV-QQGLKVVGCARTVG   45 (257)
T ss_dssp             GGTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            4899999999975 79999999986 67999999998764

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.33  E-value=0.21  Score=42.58  Aligned_cols=38  Identities=21%  Similarity=0.261  Sum_probs=33.0

Q ss_pred             cCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       163 L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      |.||++.|-|-+ .||+++|+.|+ .-|++|+..+++.+.
T Consensus         2 l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   40 (258)
T d1iy8a_           2 FTDRVVLITGGGSGLGRATAVRLA-AEGAKLSLVDVSSEG   40 (258)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            789999999876 59999999985 779999999988754

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=90.32  E-value=0.16  Score=43.14  Aligned_cols=39  Identities=18%  Similarity=0.109  Sum_probs=33.0

Q ss_pred             cccCCCeEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~L~gktvgIvG~G---~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      ..|.||++.|-|-+   .||+++|++|+ .-|++|+..++..+
T Consensus         4 ~~L~gK~alITGas~~~GIG~aiA~~la-~~Ga~V~i~~~~~~   45 (256)
T d1ulua_           4 VDLSGKKALVMGVTNQRSLGFAIAAKLK-EAGAEVALSYQAER   45 (256)
T ss_dssp             ECCTTCEEEEESCCCSSSHHHHHHHHHH-HTTCEEEEEESSGG
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEeCcHH
Confidence            46899999999975   59999999985 67999998887653

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=90.10  E-value=0.26  Score=39.57  Aligned_cols=112  Identities=14%  Similarity=0.231  Sum_probs=60.3

Q ss_pred             eEEEEecCHHHHHHHHHHHh--cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcC
Q 019387          167 TVGVIGAGRIGSAYARMMVE--GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHP  244 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~--afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~  244 (342)
                      +|||=|||+||+.+.|.+..  ..+.+|.+.+.......-.+.-.|++.   +|..+.      +.+   ...|.+++  
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~vvaINd~~~~e~~ayLlkyDS~---hG~~~~------~v~---~~~~~l~i--   67 (169)
T d1hdgo1           2 RVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSV---HKKFPG------KVE---YTENSLIV--   67 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTT---TCCCSS------CEE---ECSSEEEE--
T ss_pred             EEEEECCChHHHHHHHHHHhccCCCEEEEEeccCccHHHHHHHHhcccc---ccccCc------eEE---EECCEEEE--
Confidence            79999999999999997643  345788776443333333333334322   111111      111   12344443  


Q ss_pred             CCCcccccccCHHHHhcCC---CCc-EEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 019387          245 VLDKTTYHLINKERLATMK---KEA-ILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       245 pl~~~t~~li~~~~l~~mk---~ga-~lINvaRG~~vd~~aL~~aL~~g~i~~aaL  296 (342)
                        +.+.-.+++....+.++   -|. ++|.+ .|.--+.+.+...|+.| .....+
T Consensus        68 --ng~~I~~~~~~~p~~i~W~~~gvD~ViEc-TG~f~t~~~~~~hl~~G-akkVii  119 (169)
T d1hdgo1          68 --DGKEIKVFAEPDPSKLPWKDLGVDFVIES-TGVFRNREKAELHLQAG-AKKVII  119 (169)
T ss_dssp             --TTEEEEEECCSSGGGSCHHHHTCCEEEEC-SSSCCBHHHHTHHHHTT-CSEEEE
T ss_pred             --CCEEEEEEeCCChhhCCccccCCCEEEEe-cceeccccchhhhccCC-CceEEE
Confidence              23344445444344442   233 55555 66667788888888775 444444

>d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Activating enzymes of the ubiquitin-like proteins
superfamily: Activating enzymes of the ubiquitin-like proteins
family: Molybdenum cofactor biosynthesis protein MoeB
domain: Molybdenum cofactor biosynthesis protein MoeB
species: Escherichia coli [TaxId: 562]

Probab=89.84  E-value=0.075  Score=45.12  Aligned_cols=37  Identities=27%  Similarity=0.433  Sum_probs=31.6

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCc-EEEEEcCC
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKM-NLIYYDLY  198 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~-~V~~~d~~  198 (342)
                      ..|.+++|.|+|+|.+|..+|..|+ ..|. ++..+|..
T Consensus        26 ~kL~~~~VliiG~GglGs~va~~La-~~Gvg~i~lvD~D   63 (247)
T d1jw9b_          26 EALKDSRVLIVGLGGLGCAASQYLA-SAGVGNLTLLDFD   63 (247)
T ss_dssp             HHHHHCEEEEECCSHHHHHHHHHHH-HHTCSEEEEECCC
T ss_pred             HHHhCCCEEEECCCHHHHHHHHHHH-HcCCCeEEEECCc
Confidence            4589999999999999999999985 6787 77788854

>d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=89.80  E-value=0.39  Score=37.56  Aligned_cols=76  Identities=20%  Similarity=0.155  Sum_probs=45.3

Q ss_pred             eEEEEe-cCHHHHHHHHHHHhc--CC----cEEEEEcCCchhHHHHHHhhhhhhhhccC-CCCccccccCCHHHHhhcCC
Q 019387          167 TVGVIG-AGRIGSAYARMMVEG--FK----MNLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREAD  238 (342)
Q Consensus       167 tvgIvG-~G~IG~~vA~~l~~a--fg----~~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ll~~aD  238 (342)
                      +|.|+| .|++|+.+|-.|+.+  |+    ..+..+|............   ....... ..........+..+.+++||
T Consensus         5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d   81 (154)
T d5mdha1           5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVL---MELQDCALPLLKDVIATDKEEIAFKDLD   81 (154)
T ss_dssp             EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHH---HHHHHTCCTTEEEEEEESCHHHHTTTCS
T ss_pred             EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhh---hhhcccccccccccccCcccccccCCce
Confidence            899999 599999999887532  33    2577788765432111110   0001101 11112334467889999999


Q ss_pred             EEEEcCC
Q 019387          239 VISLHPV  245 (342)
Q Consensus       239 iV~l~~p  245 (342)
                      +|+++..
T Consensus        82 vVVitag   88 (154)
T d5mdha1          82 VAILVGS   88 (154)
T ss_dssp             EEEECCS
T ss_pred             EEEEecc
Confidence            9998863

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=89.78  E-value=0.19  Score=42.99  Aligned_cols=39  Identities=21%  Similarity=0.199  Sum_probs=33.9

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++.|-|-+ .||+++|+.|+ .-|++|+..+++.+.
T Consensus         5 ~L~GK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   44 (259)
T d2ae2a_           5 NLEGCTALVTGGSRGIGYGIVEELA-SLGASVYTCSRNQKE   44 (259)
T ss_dssp             CCTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            6899999999986 59999999985 679999999987653

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=89.68  E-value=0.12  Score=44.07  Aligned_cols=40  Identities=23%  Similarity=0.193  Sum_probs=31.6

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      +.|.||++.|-|-+. ||.++|+.|+ .-|++|+..+++...
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la-~~G~~Vvi~~~~~~~   42 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELG-RRGASVVVNYGSSSK   42 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSCHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEcCCChH
Confidence            468999999998764 9999999985 779999875444433

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=89.67  E-value=0.13  Score=43.96  Aligned_cols=40  Identities=25%  Similarity=0.255  Sum_probs=34.6

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .+|.||++.|-|-+. ||+++|+.|+ .-|++|+..+++.+.
T Consensus         5 m~l~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   45 (260)
T d1h5qa_           5 ISFVNKTIIVTGGNRGIGLAFTRAVA-AAGANVAVIYRSAAD   45 (260)
T ss_dssp             ECCTTEEEEEETTTSHHHHHHHHHHH-HTTEEEEEEESSCTT
T ss_pred             ccCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            468999999999775 9999999985 789999999988754

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=89.47  E-value=0.29  Score=39.30  Aligned_cols=115  Identities=19%  Similarity=0.245  Sum_probs=60.2

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|||=|||+||+.+.|.+...-..++.+. |+......-.+.-.|++.   +|..+      .++.   ...+.+++   
T Consensus         3 kIgINGFGRIGR~v~R~~~~~~~~~ivaINd~~~~~~~~ayLlkyDS~---hG~~~------~~v~---~~~~~l~i---   67 (169)
T d1u8fo1           3 KVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDST---HGKFH------GTVK---AENGKLVI---   67 (169)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTT---TCSCS------SCEE---EETTEEEE---
T ss_pred             EEEEECCcHHHHHHHHHHHHCCCcEEEEecCCCccHHHHHHHHhhccc---cCCcC------CeEE---EECCEEEE---
Confidence            79999999999999987543335777765 545444434444444432   11111      1111   12344443   


Q ss_pred             CCcccccccCHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEec
Q 019387          246 LDKTTYHLINKE---RLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDV  298 (342)
Q Consensus       246 l~~~t~~li~~~---~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV  298 (342)
                       +.....+++..   .+.+=+-|.-+|==+.|.--+.+.+..-|+.| .....+..
T Consensus        68 -~~~~I~~~~~~~p~~i~W~~~~vDiViEcTG~f~~~~~~~~hl~~g-akkViiSa  121 (169)
T d1u8fo1          68 -NGNPITIFQERDPSKIKWGDAGAEYVVESTGVFTTMEKAGAHLQGG-AKRVIISA  121 (169)
T ss_dssp             -TTEEEEEECCSSGGGCCTTTTTCCEEEECSSSCCSHHHHGGGGGGT-CSEEEESS
T ss_pred             -CCEEEEEEECCChhhCCccccCCCEEEEecceeccHHHHHHHHhcC-CceEeecc
Confidence             12333333322   33333334434333466667777777767665 55555543

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=89.40  E-value=0.29  Score=39.36  Aligned_cols=112  Identities=16%  Similarity=0.274  Sum_probs=56.6

Q ss_pred             eEEEEecCHHHHHHHHHHHh--cCCcEEEEE-cCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVE--GFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~--afg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      +|||=|||+||+.+.|.+..  .-..+|.+. |+. ....-.+.-.|++.   +|..+.      +..  ..+-+.+++ 
T Consensus         2 kIgINGfGRIGR~v~R~~~~~~~~~i~ivaINd~~-~~~~~ayLlkyDSv---hG~~~~------~i~--~~~~~~~~i-   68 (172)
T d1rm4a1           2 KVAINGFGRIGRNFLRCWHGRKDSPLDVVVINDTG-GVKQASHLLKYDSI---LGTFDA------DVK--TAGDSAISV-   68 (172)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCSSCSEEEEEEECTT-CHHHHHHHHHCCTT---TCSCSS------CEE--ECTTSEEEE-
T ss_pred             EEEEECCCHHHHHHHHHHHhCCCCCEEEEEEcCCC-CHHHHHHHHhcCcc---cccccc------eeE--ecCCcceEE-
Confidence            79999999999999997532  233677765 443 22222233333322   111110      100  112233322 


Q ss_pred             CCCCcccccccCHHHHhcCC---CCc-EEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 019387          244 PVLDKTTYHLINKERLATMK---KEA-ILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk---~ga-~lINvaRG~~vd~~aL~~aL~~g~i~~aaL  296 (342)
                         +.....+++....+.++   -|+ ++|.+ .|.--+.+.+..-|+.| .....+
T Consensus        69 ---ng~~I~~~~~~~p~~i~W~~~gvDiViEc-TG~f~~~~~~~~hl~~G-akkVii  120 (172)
T d1rm4a1          69 ---DGKVIKVVSDRNPVNLPWGDMGIDLVIEG-TGVFVDRDGAGKHLQAG-AKKVLI  120 (172)
T ss_dssp             ---TTEEEEEECCSCGGGSCHHHHTCCEEEEC-SSSCCBHHHHHHHHHTT-CSCEEE
T ss_pred             ---CCEEEEEecCCChHHCChhhcCCCEEEec-CceEccHHHHHHHHhcC-CceEEe
Confidence               22333444333333332   244 55555 66667788888888876 444444

>d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Pinoresinol-lariciresinol reductase
species: Giant arborvitae (Thuja plicata) [TaxId: 3316]

Probab=89.38  E-value=0.29  Score=41.50  Aligned_cols=83  Identities=13%  Similarity=0.106  Sum_probs=48.8

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCc--cccccCCHHHHhhcCCEEE
Q 019387          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPV--TWKRASSMDEVLREADVIS  241 (342)
Q Consensus       165 gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~ll~~aDiV~  241 (342)
                      -++|.|.| .|.||+.+++.| ..-|.+|++.+|............. ......+....  .......+.+.+..++.++
T Consensus         3 k~KILVtGatG~iG~~l~~~L-~~~G~~V~~~~R~~~~~~~~~~~~~-~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~   80 (312)
T d1qyda_           3 KSRVLIVGGTGYIGKRIVNAS-ISLGHPTYVLFRPEVVSNIDKVQML-LYFKQLGAKLIEASLDDHQRLVDALKQVDVVI   80 (312)
T ss_dssp             CCCEEEESTTSTTHHHHHHHH-HHTTCCEEEECCSCCSSCHHHHHHH-HHHHTTTCEEECCCSSCHHHHHHHHTTCSEEE
T ss_pred             CCEEEEECCCCHHHHHHHHHH-HhCCCEEEEEECCCcccchhHHHHH-hhhccCCcEEEEeecccchhhhhhccCcchhh
Confidence            35799999 599999999987 4679999998876532111100000 00111111111  1112345667888999998


Q ss_pred             EcCCCCcc
Q 019387          242 LHPVLDKT  249 (342)
Q Consensus       242 l~~pl~~~  249 (342)
                      .+.+....
T Consensus        81 ~~~~~~~~   88 (312)
T d1qyda_          81 SALAGGVL   88 (312)
T ss_dssp             ECCCCSSS
T ss_pred             hhhhhccc
Confidence            88775443

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=89.30  E-value=0.24  Score=40.06  Aligned_cols=39  Identities=21%  Similarity=0.320  Sum_probs=33.8

Q ss_pred             cccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       161 ~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      ....+|+|.|||-|..|-+.|..| ...|.+|..|+..+.
T Consensus        39 ~~~~~k~V~IIGaGPAGL~AA~~l-a~~G~~Vtl~E~~~~   77 (179)
T d1ps9a3          39 PAVQKKNLAVVGAGPAGLAFAINA-AARGHQVTLFDAHSE   77 (179)
T ss_dssp             SCSSCCEEEEECCSHHHHHHHHHH-HTTTCEEEEEESSSS
T ss_pred             CCCCCcEEEEECccHHHHHHHHHH-HhhccceEEEeccCc
Confidence            345689999999999999999997 578999999998753

>d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Escherichia coli [TaxId: 562]

Probab=89.18  E-value=0.19  Score=42.38  Aligned_cols=37  Identities=22%  Similarity=0.215  Sum_probs=31.7

Q ss_pred             cCCCeEEEEecCH---HHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          163 LKGQTVGVIGAGR---IGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       163 L~gktvgIvG~G~---IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      |.||++.|-|-+.   ||+++|+.|+ .-|++|+..+++.+
T Consensus         3 L~gK~~lITGass~~GIG~aiA~~l~-~~G~~V~i~~~~~~   42 (258)
T d1qsga_           3 LSGKRILVTGVASKLSIAYGIAQAMH-REGAELAFTYQNDK   42 (258)
T ss_dssp             TTTCEEEECCCCSTTSHHHHHHHHHH-HTTCEEEEEESSTT
T ss_pred             CCCCEEEEECCCCchhHHHHHHHHHH-HcCCEEEEEeCCHH
Confidence            7899999999764   9999999985 78999998887643

>d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Usg-1 protein homolog PA3116
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.16  E-value=0.15  Score=39.86  Aligned_cols=90  Identities=14%  Similarity=0.142  Sum_probs=49.0

Q ss_pred             CeEEEEec-CHHHHHHHHHHHh-cC-CcEEEEEc-CCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEE
Q 019387          166 QTVGVIGA-GRIGSAYARMMVE-GF-KMNLIYYD-LYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVIS  241 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~-af-g~~V~~~d-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~  241 (342)
                      .+|||||- |-+|+++.+.|.+ .+ ..++..+. ++....          .+.. ....  ......-++.+.++|+++
T Consensus         3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk----------~i~~-~~~~--~~~~~~~~~~~~~~d~vf   69 (144)
T d2hjsa1           3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQ----------RMGF-AESS--LRVGDVDSFDFSSVGLAF   69 (144)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTC----------EEEE-TTEE--EECEEGGGCCGGGCSEEE
T ss_pred             CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCc----------ceee-cccc--chhccchhhhhccceEEE
Confidence            47999987 9999999999842 33 34555442 221110          0000 0000  011112234467899999


Q ss_pred             EcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          242 LHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       242 l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      +++|.. .++.+.    -...+.|..+||.+-
T Consensus        70 ~a~p~~-~s~~~~----~~~~~~g~~VID~Ss   96 (144)
T d2hjsa1          70 FAAAAE-VSRAHA----ERARAAGCSVIDLSG   96 (144)
T ss_dssp             ECSCHH-HHHHHH----HHHHHTTCEEEETTC
T ss_pred             ecCCcc-hhhhhc----cccccCCceEEeech
Confidence            999842 222222    122357889998764

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=89.15  E-value=0.28  Score=41.37  Aligned_cols=39  Identities=26%  Similarity=0.300  Sum_probs=33.2

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++.|-|- +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         2 ~L~gK~~lITGas~GIG~aia~~l~-~~G~~V~~~~r~~~~   41 (242)
T d1ulsa_           2 RLKDKAVLITGAAHGIGRATLELFA-KEGARLVACDIEEGP   41 (242)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            378999999996 469999999985 789999999987643

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=89.14  E-value=0.074  Score=43.14  Aligned_cols=94  Identities=14%  Similarity=0.076  Sum_probs=54.6

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh--hcCCEE
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL--READVI  240 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll--~~aDiV  240 (342)
                      .+.+|.|.|- |.+|+...+. +|.+|++|++..+++++.........+..+..+         ..+..+.+  ...|.+
T Consensus        31 ~~~~vlV~gasGGVG~~aiQl-Ak~~Ga~Via~~~~~~k~~~~~~lGad~vi~~~---------~~~~~~~l~~~~~~~v  100 (177)
T d1o89a2          31 QDGEIVVTGASGGVGSTAVAL-LHKLGYQVVAVSGRESTHEYLKSLGASRVLPRD---------EFAESRPLEKQVWAGA  100 (177)
T ss_dssp             GGCEEEESSTTSHHHHHHHHH-HHHTTCCEEEEESCGGGHHHHHHHTEEEEEEGG---------GSSSCCSSCCCCEEEE
T ss_pred             CCCcEEEEEccccchHHHHHH-HHHcCCCeEEEecchhHHHHHHhhccccccccc---------cHHHHHHHHhhcCCee
Confidence            4557766654 9999999998 589999999988877653211111111111100         00111111  224666


Q ss_pred             EEcCCCCcccccccCHHHHhcCCCCcEEEEcCC
Q 019387          241 SLHPVLDKTTYHLINKERLATMKKEAILVNCSR  273 (342)
Q Consensus       241 ~l~~pl~~~t~~li~~~~l~~mk~ga~lINvaR  273 (342)
                      +-++-.  +    .-...+..++++..+|+++.
T Consensus       101 vD~Vgg--~----~~~~~l~~l~~~Griv~~G~  127 (177)
T d1o89a2         101 IDTVGD--K----VLAKVLAQMNYGGCVAACGL  127 (177)
T ss_dssp             EESSCH--H----HHHHHHHTEEEEEEEEECCC
T ss_pred             EEEcch--H----HHHHHHHHhccccceEeecc
Confidence            666531  1    23567888888889998864

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.77  E-value=0.24  Score=39.97  Aligned_cols=121  Identities=14%  Similarity=0.026  Sum_probs=70.2

Q ss_pred             ccCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHh-----h
Q 019387          162 LLKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVL-----R  235 (342)
Q Consensus       162 ~L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll-----~  235 (342)
                      .-.|.+|.|.| -|.+|....+. ++.+|++|++...++++....  .       .-+... .+.+....++..     .
T Consensus        29 ~~~g~~VLI~gaaGGVG~~aiQl-ak~~Ga~Viat~~s~~k~~~~--~-------~lGa~~-vi~~~~~~~~~~~~~~~~   97 (176)
T d1xa0a2          29 TPERGPVLVTGATGGVGSLAVSM-LAKRGYTVEASTGKAAEHDYL--R-------VLGAKE-VLAREDVMAERIRPLDKQ   97 (176)
T ss_dssp             CGGGCCEEESSTTSHHHHHHHHH-HHHTTCCEEEEESCTTCHHHH--H-------HTTCSE-EEECC---------CCSC
T ss_pred             CCCCCEEEEEeccchHHHHHHHH-HHHcCCceEEecCchHHHHHH--H-------hcccce-eeecchhHHHHHHHhhcc
Confidence            34588999999 59999999998 589999999987766543111  1       111111 111112222222     3


Q ss_pred             cCCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC-CCcccCHHHHHHHHHcCCceEEEEecCC
Q 019387          236 EADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS-RGPVIDEVALVEHLKQNPMFRVGLDVFE  300 (342)
Q Consensus       236 ~aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva-RG~~vd~~aL~~aL~~g~i~~aaLDV~~  300 (342)
                      ..|+|+-++..      -.-...+..|++|..+|.++ .++....-.+...+.. ++.-.++|.+.
T Consensus        98 gvD~vid~vgg------~~~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k-~~~i~Gv~~~~  156 (176)
T d1xa0a2          98 RWAAAVDPVGG------RTLATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILR-GVSLLGIDSVY  156 (176)
T ss_dssp             CEEEEEECSTT------TTHHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHT-TCEEEECCSSS
T ss_pred             CcCEEEEcCCc------hhHHHHHHHhCCCceEEEeecccCcccCCCHHHHHHC-CcEEEEEeCCc
Confidence            46788877652      23467789999999999886 3333322333333332 45555666544

>d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.66  E-value=0.18  Score=38.51  Aligned_cols=30  Identities=23%  Similarity=0.544  Sum_probs=24.3

Q ss_pred             eEEEEec-CHHHHHHHHHHHhcCCcEEEE-EcC
Q 019387          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIY-YDL  197 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~~afg~~V~~-~d~  197 (342)
                      +|||+|+ |+||+.+++.+ ..-|.++.+ +|.
T Consensus         2 ki~i~G~~GrMG~~i~~~~-~~~~~~l~~~id~   33 (128)
T d1vm6a3           2 KYGIVGYSGRMGQEIQKVF-SEKGHELVLKVDV   33 (128)
T ss_dssp             EEEEETTTSHHHHHHHHHH-HHTTCEEEEEEET
T ss_pred             EEEEECCCCHHHHHHHHHH-hcCCCeEEEEECC
Confidence            6999996 99999999985 677888764 443

>d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein At5g02240 (T7H20 290)
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.61  E-value=0.38  Score=38.75  Aligned_cols=70  Identities=14%  Similarity=0.066  Sum_probs=43.8

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCC--ccccccCCHHHHhhcCCEE
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQP--VTWKRASSMDEVLREADVI  240 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~ll~~aDiV  240 (342)
                      +||.|.| -|.||+.+++.|+ .-|  ..|....+.++.....         . .....  .......++.++++.+|.|
T Consensus         4 ~tVlVtGatG~iG~~l~~~Ll-~~g~~v~v~~~~R~~~~~~~~---------~-~~~~~~~~d~~~~~~~~~~~~~~d~v   72 (252)
T d2q46a1           4 PTVLVTGASGRTGQIVYKKLK-EGSDKFVAKGLVRSAQGKEKI---------G-GEADVFIGDITDADSINPAFQGIDAL   72 (252)
T ss_dssp             CEEEEESTTSTTHHHHHHHHH-HTTTTCEEEEEESCHHHHHHT---------T-CCTTEEECCTTSHHHHHHHHTTCSEE
T ss_pred             CEEEEECCccHHHHHHHHHHH-HCCCcEEEEEEcCCHHHHHhc---------c-CCcEEEEeeeccccccccccccceee
Confidence            6899999 6999999999985 445  5677777766432110         0 01110  1111234566788999999


Q ss_pred             EEcCCC
Q 019387          241 SLHPVL  246 (342)
Q Consensus       241 ~l~~pl  246 (342)
                      +.+...
T Consensus        73 i~~a~~   78 (252)
T d2q46a1          73 VILTSA   78 (252)
T ss_dssp             EECCCC
T ss_pred             EEEEee
Confidence            877643

>d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Drosophila alcohol dehydrogenase
species: Fly (Drosophila lebanonensis) [TaxId: 7225]

Probab=88.58  E-value=0.38  Score=40.86  Aligned_cols=38  Identities=18%  Similarity=0.032  Sum_probs=31.2

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .|.||++-|-|-+ .||.++|+.|+ .-|++|+...++.+
T Consensus         2 ~l~gK~vlITGgs~GIG~~~A~~la-~~G~~vii~~r~~~   40 (254)
T d1sbya1           2 DLTNKNVIFVAALGGIGLDTSRELV-KRNLKNFVILDRVE   40 (254)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHH-HTCCSEEEEEESSC
T ss_pred             CCCCCEEEEecCCCHHHHHHHHHHH-HCCCEEEEEECCcc
Confidence            4789999999988 59999999985 77998877655443

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=88.48  E-value=0.16  Score=43.37  Aligned_cols=39  Identities=26%  Similarity=0.365  Sum_probs=33.8

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      +|.||++.|-|-+ .||+++|+.|+ ..|++|+..|++.+.
T Consensus         2 dL~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (254)
T d1hdca_           2 DLSGKTVIITGGARGLGAEAARQAV-AAGARVVLADVLDEE   41 (254)
T ss_dssp             CCCCSEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            5889999999987 59999999985 679999999987653

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=88.46  E-value=0.15  Score=43.57  Aligned_cols=40  Identities=28%  Similarity=0.269  Sum_probs=34.4

Q ss_pred             cccCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          161 NLLKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ..|.||++.|-|-+. ||+++|+.|+ ..|++|+..+++.+.
T Consensus         4 F~LkgK~alVTGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~   44 (259)
T d1xq1a_           4 WSLKAKTVLVTGGTKGIGHAIVEEFA-GFGAVIHTCARNEYE   44 (259)
T ss_dssp             TCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            468999999999765 9999999985 779999999987653

>d1y7ta1 c.2.1.5 (A:0-153) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Thermus thermophilus [TaxId: 274]

Probab=88.43  E-value=0.58  Score=36.47  Aligned_cols=112  Identities=20%  Similarity=0.174  Sum_probs=57.6

Q ss_pred             CeEEEEec-CHHHHHHHHHHHhc--CCc----EEEEEcCCchhHHHHHHhhhhhhhhccC-CCCccccccCCHHHHhhcC
Q 019387          166 QTVGVIGA-GRIGSAYARMMVEG--FKM----NLIYYDLYQATRLEKFVTAYGQFLKANG-EQPVTWKRASSMDEVLREA  237 (342)
Q Consensus       166 ktvgIvG~-G~IG~~vA~~l~~a--fg~----~V~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~ll~~a  237 (342)
                      .+|.|+|. |.+|+.+|-.|+.+  +|.    ....++........   +.......... ..........+..+.+++|
T Consensus         5 ~KV~IiGA~G~VG~~~a~~l~~~~l~~~~~~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a   81 (154)
T d1y7ta1           5 VRVAVTGAAGQIGYSLLFRIAAGEMLGKDQPVILQLLEIPQAMKAL---EGVVMELEDCAFPLLAGLEATDDPKVAFKDA   81 (154)
T ss_dssp             EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCGGGHHHH---HHHHHHHHTTTCTTEEEEEEESCHHHHTTTC
T ss_pred             CEEEEECCCCHHHHHHHHHHHhccccccccchhHhHhccccchhhH---cCchhhhhccccccccccccCCchhhhcccc
Confidence            38999996 99999999887532  331    22334333221111   10000111111 1111233346778899999


Q ss_pred             CEEEEcCCCC--c-ccc-cccC--H-------HHHhc-CCCCcEEEEcCCCcccCHHHH
Q 019387          238 DVISLHPVLD--K-TTY-HLIN--K-------ERLAT-MKKEAILVNCSRGPVIDEVAL  282 (342)
Q Consensus       238 DiV~l~~pl~--~-~t~-~li~--~-------~~l~~-mk~ga~lINvaRG~~vd~~aL  282 (342)
                      |+|+++.-..  | +++ .++.  .       ..+.+ .+++++++.++.  .+|.-..
T Consensus        82 dvViitaG~~~~pg~~r~dl~~~N~~i~~~~~~~i~k~a~~~~~vivvsN--PvDv~t~  138 (154)
T d1y7ta1          82 DYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGN--PANTNAL  138 (154)
T ss_dssp             SEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSS--SHHHHHH
T ss_pred             cEEEeecCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEEecC--cHHHHHH
Confidence            9999886322  1 122 1221  1       22333 466888888864  5665443

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=88.38  E-value=0.36  Score=38.83  Aligned_cols=114  Identities=17%  Similarity=0.209  Sum_probs=60.1

Q ss_pred             eEEEEecCHHHHHHHHHHHh---cCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEc
Q 019387          167 TVGVIGAGRIGSAYARMMVE---GFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLH  243 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~---afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~  243 (342)
                      +|||=|||+||+.+.|.+..   .-..+|.+.+.......-.+.-.|++..   +..+      ..   +-...+.+++ 
T Consensus         3 kigINGfGRIGR~v~R~~~~~~~~~~~~vvaINd~~~~~~~ayLlkyDS~h---G~~~------~~---v~~~~~~l~i-   69 (173)
T d1obfo1           3 RVAINGYGRIGRNILRAHYEGGKSHDIEIVAINDLGDPKTNAHLTRYDTAH---GKFP------GT---VSVNGSYMVV-   69 (173)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTSCSSEEEEEEECSSCHHHHHHHHHEETTT---EECS------SC---EEEETTEEEE-
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCCCCeEEEEEcCCCChHHHHHhhcccccC---CCcC------ce---EEeccceEEE-
Confidence            69999999999999997542   1246777665433333333443443221   1100      11   1123444443 


Q ss_pred             CCCCcccccccCHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEe
Q 019387          244 PVLDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLD  297 (342)
Q Consensus       244 ~pl~~~t~~li~~~~l~~mk---~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLD  297 (342)
                         +.....+++....+.++   -|.-+|==+.|.--+.+.+..-|+.| .....+-
T Consensus        70 ---~g~~i~i~~~~~p~~i~W~~~gvDiViEcTG~f~~~~~a~~hl~~G-akkViiS  122 (173)
T d1obfo1          70 ---NGDKIRVDANRNPAQLPWGALKVDVVLECTGFFTTKEKAGAHIKGG-AKKVIIS  122 (173)
T ss_dssp             ---TTEEEEEECCSCGGGSCTTTTTCSEEEECSSSCCSHHHHHHHHHHT-CSEEEES
T ss_pred             ---CCEEEEEEecCCHHHCcccccccceEEEecccccCHHHHHHHhccC-CcceEEe
Confidence               23444555444334333   34433333366666777788888776 4445543

>d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Aspartate beta-semialdehyde dehydrogenase
species: Vibrio cholerae [TaxId: 666]

Probab=88.34  E-value=0.73  Score=35.88  Aligned_cols=110  Identities=16%  Similarity=0.214  Sum_probs=55.8

Q ss_pred             eEEEEe-cCHHHHHHHHHHHh--cC-CcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEE
Q 019387          167 TVGVIG-AGRIGSAYARMMVE--GF-KMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISL  242 (342)
Q Consensus       167 tvgIvG-~G~IG~~vA~~l~~--af-g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l  242 (342)
                      +||||| -|-.|+++.++|..  .+ ..++..+..+....  +       .. .............+ .+.+.++|++++
T Consensus         2 KVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~g--k-------~~-~~~~~~~~~~~~~~-~~~~~~~DvvF~   70 (147)
T d1mb4a1           2 RVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGV--P-------AP-NFGKDAGMLHDAFD-IESLKQLDAVIT   70 (147)
T ss_dssp             EEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSS--B-------CC-CSSSCCCBCEETTC-HHHHTTCSEEEE
T ss_pred             EEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccc--c-------cc-ccCCcceeeecccc-hhhhccccEEEE
Confidence            699998 59999999987642  22 24666543332110  0       00 00000011111122 355789999999


Q ss_pred             cCCCCcccccccCHHHHhcCCCCcEEEEcCCCc-----------ccCHHHHHHHHHcCC
Q 019387          243 HPVLDKTTYHLINKERLATMKKEAILVNCSRGP-----------VIDEVALVEHLKQNP  290 (342)
Q Consensus       243 ~~pl~~~t~~li~~~~l~~mk~ga~lINvaRG~-----------~vd~~aL~~aL~~g~  290 (342)
                      |+|.. .+..+. .. +..-..++++|+.|---           =|+.+.+.+++++|+
T Consensus        71 alp~~-~s~~~~-~~-l~~~g~~~~VIDlSsdfR~~~dvpl~lPEiN~~~I~~a~~~~~  126 (147)
T d1mb4a1          71 CQGGS-YTEKVY-PA-LRQAGWKGYWIDAASTLRMDKEAIITLDPVNLKQILHGIHHGT  126 (147)
T ss_dssp             CSCHH-HHHHHH-HH-HHHTTCCSEEEESSSTTTTCTTEEEECHHHHHHHHHHHHHTTC
T ss_pred             ecCch-HHHHHh-HH-HHHcCCceEEEeCCccccccCCceEEeCCcCHHHHHHHHHcCC
Confidence            99942 222222 11 12222335666665322           156667777776654

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=88.09  E-value=0.57  Score=39.44  Aligned_cols=42  Identities=26%  Similarity=0.249  Sum_probs=34.7

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchhHHH
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~~~~  204 (342)
                      .|.||++.|-|-+ .||+++|+.|+ .-|++|+..|+......+
T Consensus         2 rL~gKvalVTGas~GIG~aia~~la-~~Ga~V~~~~~~~~~~~~   44 (247)
T d2ew8a1           2 RLKDKLAVITGGANGIGRAIAERFA-VEGADIAIADLVPAPEAE   44 (247)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSCCHHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCchHHHH
Confidence            3789999999985 69999999985 789999999987654433

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.08  E-value=0.45  Score=40.22  Aligned_cols=38  Identities=24%  Similarity=0.296  Sum_probs=32.2

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      +.||++.|-|- +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         1 i~GKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   39 (254)
T d2gdza1           1 VNGKVALVTGAAQGIGRAFAEALL-LKGAKVALVDWNLEA   39 (254)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            36899999987 569999999985 679999999988754

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=88.00  E-value=0.2  Score=36.76  Aligned_cols=39  Identities=23%  Similarity=0.353  Sum_probs=30.7

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      +...+||+|.|||-|+-|..+|.-|+ ....++++..++.
T Consensus        27 ~~~f~gK~VlVVG~g~Sa~dia~~l~-~~ak~v~~~~~r~   65 (107)
T d2gv8a2          27 PELFVGESVLVVGGASSANDLVRHLT-PVAKHPIYQSLLG   65 (107)
T ss_dssp             GGGGTTCCEEEECSSHHHHHHHHHHT-TTSCSSEEEECTT
T ss_pred             hhhcCCCeEEEECCCCCHHHHHHHHH-HhcCEEEEEEecC
Confidence            45789999999999999999999874 5666766554443

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=87.98  E-value=0.25  Score=39.67  Aligned_cols=112  Identities=17%  Similarity=0.208  Sum_probs=62.1

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|||=|||+||+.+.|.+ ..-+.+|.+.+.......-.+.-.|++..   +..+      ..   +-...|.+++    
T Consensus         2 kigINGfGRIGR~~~R~l-~~~~i~iv~INd~~~~~~~ayLl~yDS~h---G~~~------~~---v~~~~~~l~i----   64 (168)
T d2g82a1           2 KVGINGFGRIGRQVFRIL-HSRGVEVALINDLTDNKTLAHLLKYDSIY---HRFP------GE---VAYDDQYLYV----   64 (168)
T ss_dssp             EEEEECCSHHHHHHHHHH-HHHTCCEEEEECSSCHHHHHHHHHCCTTT---CSCS------SC---EEECSSEEEE----
T ss_pred             EEEEECCcHHHHHHHHHH-hcCCCEEEEECCCcchhhhhheeeccccc---Cccc------cc---cccccceeEe----
Confidence            799999999999999986 34467777654433332223333333221   1111      11   1123455543    


Q ss_pred             CcccccccCHH---HHhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 019387          247 DKTTYHLINKE---RLATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       247 ~~~t~~li~~~---~l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaL  296 (342)
                      +.+...+.+..   .+.+=+-|.-+|==+.|.-.+.+.+...|+.| .....+
T Consensus        65 ~g~~I~~~~~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkVii  116 (168)
T d2g82a1          65 DGKAIRATAVKDPKEIPWAEAGVGVVIESTGVFTDADKAKAHLEGG-AKKVII  116 (168)
T ss_dssp             TTEEEEEECCSSGGGCCTGGGTEEEEEECSSSCCBHHHHTHHHHTT-CSEEEE
T ss_pred             cceeEEEEecCChHHCcccccCCceeEeccccccchHHhhhhhccc-cceeee
Confidence            22333444433   33333345555555688888888888888854 555555

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=87.97  E-value=0.23  Score=39.90  Aligned_cols=44  Identities=23%  Similarity=0.413  Sum_probs=30.5

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhh
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYG  211 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~-d~~~~~~~~~~~~~~~  211 (342)
                      +|||=|||+||+.+.|.+. .-+.+|.+. |+..+...-.+.-.|+
T Consensus         2 kIgINGfGRIGR~~~R~~~-~~~~~ivaINd~~~~~~~~~yLlkyD   46 (169)
T d1dssg1           2 KIGINGFGRIGRLVLRAAL-EMGAQVVAVNDPFIALEYMVYMFKYD   46 (169)
T ss_dssp             CEEEECCSHHHHHHHHHHH-HHTCCEEEEECTTSCHHHHHHHHHCC
T ss_pred             eEEEECCcHHHHHHHHHHH-hCCCcEEEECCCCcCHHHHHHHHhcc
Confidence            7999999999999999864 457777765 5555444334444443

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=87.71  E-value=0.24  Score=42.15  Aligned_cols=41  Identities=24%  Similarity=0.372  Sum_probs=33.2

Q ss_pred             cCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchhHHH
Q 019387          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQATRLE  204 (342)
Q Consensus       163 L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~~~~  204 (342)
                      |.||++.|-|-+. ||+++|+.|+ .-|++|+..+++.....+
T Consensus         2 L~gK~alITGas~GIG~aiA~~la-~~Ga~V~~~~r~~~~~~~   43 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALA-AQGADIVLNGFGDAAEIE   43 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEECCSCHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEeCCcHHHHH
Confidence            6799988887755 9999999985 779999999987654433

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=87.68  E-value=0.38  Score=38.66  Aligned_cols=112  Identities=14%  Similarity=0.226  Sum_probs=58.0

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVL  246 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl  246 (342)
                      +|||=|||+||+.+.|.+.+.-..+|.+.+.......-.+.-.|++..   +..+      .+.+   ...|.+++    
T Consensus         3 kIgINGfGRIGR~v~R~~l~~~~~~ivaINd~~d~~~~ayll~yDS~h---G~~~------~~v~---~~~~~l~i----   66 (171)
T d3cmco1           3 KVGINGFGRIGRNVFRAALKNPDIEVVAVNDLTDANTLAHLLKYDSVH---GRLD------AEVS---VNGNNLVV----   66 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHTTCTTEEEEEEECSSCHHHHHHHHHEETTT---EECS------SCEE---EETTEEEE----
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHhhhhcccccC---Cccc------cccc---ccCCCEEe----
Confidence            799999999999999886444467877765333322222333333221   1000      1111   23444443    


Q ss_pred             CcccccccCHHHHhcCC---CCc-EEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 019387          247 DKTTYHLINKERLATMK---KEA-ILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       247 ~~~t~~li~~~~l~~mk---~ga-~lINvaRG~~vd~~aL~~aL~~g~i~~aaL  296 (342)
                      +.+.-.+.+....+.++   -|. ++|.+ .|.--+.+.+..-|+.| .....+
T Consensus        67 ~g~~i~i~~~~~p~~i~W~~~~vDiViEc-TG~f~t~~~~~~hl~~g-akkVii  118 (171)
T d3cmco1          67 NGKEIIVKAERDPENLAWGEIGVDIVVES-TGRFTKREDAAKHLEAG-AKKVII  118 (171)
T ss_dssp             TTEEEEEECCSSGGGCCTGGGTCCEEEEC-SSSCCBHHHHTHHHHTT-CSEEEE
T ss_pred             CCcceeeEecCCHHHccccccCCcEEEEe-cCccCCHHHHHHHHhCC-CceEEE
Confidence            12223333333333332   233 55555 56667778888888765 444444

>d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Negative transcriptional regulator NmrA
species: Aspergillus nidulans [TaxId: 162425]

Probab=87.68  E-value=0.44  Score=41.74  Aligned_cols=76  Identities=14%  Similarity=0.157  Sum_probs=47.3

Q ss_pred             CCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccc---ccCCHHHHhhcCCEE
Q 019387          165 GQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWK---RASSMDEVLREADVI  240 (342)
Q Consensus       165 gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~ll~~aDiV  240 (342)
                      .|||.|+| -|.||+.+++.| .+-|.+|.+..|.+.+.........      .+.......   ..+.++.++..+|.+
T Consensus         3 kktIlVtGatG~iG~~lv~~L-l~~G~~V~~l~R~~~~~~~~~~~~~------~~v~~~~gD~~d~~~~~~~a~~~~~~~   75 (350)
T d1xgka_           3 KKTIAVVGATGRQGASLIRVA-AAVGHHVRAQVHSLKGLIAEELQAI------PNVTLFQGPLLNNVPLMDTLFEGAHLA   75 (350)
T ss_dssp             CCCEEEESTTSHHHHHHHHHH-HHTTCCEEEEESCSCSHHHHHHHTS------TTEEEEESCCTTCHHHHHHHHTTCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHH-HhCCCeEEEEECCcchhhhhhhccc------CCCEEEEeeCCCcHHHHHHHhcCCceE
Confidence            58999999 599999999998 4678999988776544322111110      011100001   112366788899998


Q ss_pred             EEcCCCC
Q 019387          241 SLHPVLD  247 (342)
Q Consensus       241 ~l~~pl~  247 (342)
                      +...+..
T Consensus        76 ~~~~~~~   82 (350)
T d1xgka_          76 FINTTSQ   82 (350)
T ss_dssp             EECCCST
T ss_pred             Eeecccc
Confidence            8776643

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=87.43  E-value=0.46  Score=39.29  Aligned_cols=38  Identities=24%  Similarity=0.254  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .-.+++|.|||-|..|-..|..| ...|.+|..++....
T Consensus        46 ~~~~k~VvIIGaGpAGl~aA~~l-~~~G~~v~l~E~~~~   83 (233)
T d1djqa3          46 TKNKDSVLIVGAGPSGSEAARVL-MESGYTVHLTDTAEK   83 (233)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHH-HHTTCEEEEECSSSS
T ss_pred             ccCCceEEEEcccHHHHHHHHHH-HHhccceeeEeeccc
Confidence            45789999999999999999997 578999999987653

>d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus, TTHB020 [TaxId: 274]

Probab=87.30  E-value=0.28  Score=41.33  Aligned_cols=38  Identities=29%  Similarity=0.323  Sum_probs=33.4

Q ss_pred             cCCCeEEEEecCH-HHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          163 LKGQTVGVIGAGR-IGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       163 L~gktvgIvG~G~-IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      |.||++.|.|-+. ||+++|+.|+ .-|++|+..+++.+.
T Consensus         3 l~gK~alItGas~GIG~aia~~l~-~~G~~V~~~~r~~~~   41 (241)
T d2a4ka1           3 LSGKTILVTGAASGIGRAALDLFA-REGASLVAVDREERL   41 (241)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            7899999999876 9999999984 789999999988653

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.09  E-value=0.48  Score=41.21  Aligned_cols=39  Identities=26%  Similarity=0.348  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++.|-|-+ .||+++|+.|+ .-|++|++.+++.+.
T Consensus         9 ~L~gKvalITGas~GIG~aia~~la-~~Ga~Vvi~~r~~~~   48 (297)
T d1yxma1           9 LLQGQVAIVTGGATGIGKAIVKELL-ELGSNVVIASRKLER   48 (297)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            4999999999975 59999999985 679999999988653

>d2h1qa1 c.67.3.1 (A:1-251) Hypothetical protein Dhaf_3308 {Desulfitobacterium hafniense [TaxId: 49338]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: Dhaf3308-like
family: Dhaf3308-like
domain: Hypothetical protein Dhaf 3308
species: Desulfitobacterium hafniense [TaxId: 49338]

Probab=86.94  E-value=0.51  Score=40.18  Aligned_cols=33  Identities=21%  Similarity=0.214  Sum_probs=24.9

Q ss_pred             cCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          163 LKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       163 L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      ..|++|++||+-.    ..+.+ +.-|+++.++++++.
T Consensus       120 ~~g~kV~vIG~~P----~v~~l-~~~~~~~~VlE~~p~  152 (251)
T d2h1qa1         120 VKGKKVGVVGHFP----HLESL-LEPICDLSILEWSPE  152 (251)
T ss_dssp             TTTSEEEEESCCT----THHHH-HTTTSEEEEEESSCC
T ss_pred             cCCCEEEEEecch----hHHHH-HhcCCcEEEEeCCCC
Confidence            4699999999853    34444 466789999998874

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=86.79  E-value=0.54  Score=37.49  Aligned_cols=113  Identities=17%  Similarity=0.242  Sum_probs=59.5

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEEE-cCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIYY-DLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPV  245 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~p  245 (342)
                      +|||=|||+||+.+.|.+...=..+|.+. |+......-.+.-.|++..   |..+.      .   +-..-|.+++-  
T Consensus         2 kigINGfGRIGR~v~R~~~~~~~~~iv~INd~~~d~~~~ayLlkyDS~h---G~~~~------~---v~~~~~~l~i~--   67 (166)
T d2b4ro1           2 KLGINGFGRIGRLVFRAAFGRKDIEVVAINDPFMDLNHLCYLLKYDSVH---GQFPC------E---VTHADGFLLIG--   67 (166)
T ss_dssp             EEEEECCSHHHHHHHHHHHTCSSEEEEEEECTTCCHHHHHHHHHCCTTT---CSCSS------C---EEEETTEEEES--
T ss_pred             eEEEECCCHHHHHHHHHHhhCCCcEEEEECCCCCChHHhhhhhhccccc---cccee------e---eccCCceEEec--
Confidence            69999999999999998643346788876 4555444344444444321   11110      1   11223333321  


Q ss_pred             CCcccccccCHHHHhcCC---CCcEEEEcCCCcccCHHHHHHHHHcCCceEEEE
Q 019387          246 LDKTTYHLINKERLATMK---KEAILVNCSRGPVIDEVALVEHLKQNPMFRVGL  296 (342)
Q Consensus       246 l~~~t~~li~~~~l~~mk---~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaL  296 (342)
                        .+...+++..-.+.++   -|.-+|==+.|.-.+.+.+...|+.| .....+
T Consensus        68 --~~~I~i~~~~~p~~i~W~~~gvdiViEcTG~f~~~~~~~~hl~~g-akkVii  118 (166)
T d2b4ro1          68 --EKKVSVFAEKDPSQIPWGKCQVDVVCESTGVFLTKELASSHLKGG-AKKVIM  118 (166)
T ss_dssp             --SCEEEEECCSSGGGCCHHHHTCSEEEECSSSCCSHHHHTHHHHTT-CSEEEE
T ss_pred             --CcEEEEEeCCChHHccccccCCCEEEEecccccchhhhhhhhccC-CCEEEE
Confidence              1222333322222222   24444444467777788888888765 555554

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=86.37  E-value=0.24  Score=39.54  Aligned_cols=93  Identities=11%  Similarity=0.012  Sum_probs=55.9

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCcccccc----CCHHH-Hhhc
Q 019387          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRA----SSMDE-VLRE  236 (342)
Q Consensus       163 L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~-ll~~  236 (342)
                      ..|.+|.|-| -|.+|....+. |+.+|++|++...+.++....  ...       +.... ..+.    ..+.. --..
T Consensus        22 ~~~~~VLV~gaaGgVG~~avQl-Ak~~Ga~Viat~~s~~k~~~~--~~l-------Gad~v-i~~~~~~~~~~~~~~~~g   90 (167)
T d1tt7a2          22 PEKGSVLVTGATGGVGGIAVSM-LNKRGYDVVASTGNREAADYL--KQL-------GASEV-ISREDVYDGTLKALSKQQ   90 (167)
T ss_dssp             GGGCCEEEESTTSHHHHHHHHH-HHHHTCCEEEEESSSSTHHHH--HHH-------TCSEE-EEHHHHCSSCCCSSCCCC
T ss_pred             CCCCEEEEeCCcchHHHHHHHH-HHHcCCceEEEecCHHHHHHH--Hhh-------cccce-EeccchhchhhhcccCCC
Confidence            3577899999 59999999998 699999999988766542111  111       11111 0000    00000 0134


Q ss_pred             CCEEEEcCCCCcccccccCHHHHhcCCCCcEEEEcC
Q 019387          237 ADVISLHPVLDKTTYHLINKERLATMKKEAILVNCS  272 (342)
Q Consensus       237 aDiV~l~~pl~~~t~~li~~~~l~~mk~ga~lINva  272 (342)
                      .|+|+-++-.      -.-.+.++.++++..+|.++
T Consensus        91 vd~vid~vgg------~~~~~~~~~l~~~G~iv~~G  120 (167)
T d1tt7a2          91 WQGAVDPVGG------KQLASLLSKIQYGGSVAVSG  120 (167)
T ss_dssp             EEEEEESCCT------HHHHHHHTTEEEEEEEEECC
T ss_pred             ceEEEecCcH------HHHHHHHHHhccCceEEEee
Confidence            6777766531      12256788888888888876

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=86.32  E-value=0.53  Score=39.56  Aligned_cols=39  Identities=23%  Similarity=0.202  Sum_probs=32.7

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++-|-|- +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         1 dl~gK~alITGas~GIG~a~a~~l~-~~G~~Vv~~~r~~~~   40 (243)
T d1q7ba_           1 NFEGKIALVTGASRGIGRAIAETLA-ARGAKVIGTATSENG   40 (243)
T ss_dssp             CCTTCEEEESSCSSHHHHHHHHHHH-HTTCEEEEEESSHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCHHH
Confidence            378999999885 569999999985 679999999987643

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=86.23  E-value=0.42  Score=39.56  Aligned_cols=35  Identities=17%  Similarity=0.239  Sum_probs=30.8

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      ..++|.|||-|..|-.+|..|+ ..|.+|.++++.+
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~-~~G~~v~v~Er~~   37 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLR-DAGVDVDVYERSP   37 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHH-HTTCEEEEECSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            3578999999999999999985 5699999999764

>d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Oil seed rape (Brassica napus) [TaxId: 3708]

Probab=86.19  E-value=0.26  Score=42.36  Aligned_cols=38  Identities=16%  Similarity=0.148  Sum_probs=32.9

Q ss_pred             cccCCCeEEEEecC---HHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          161 NLLKGQTVGVIGAG---RIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       161 ~~L~gktvgIvG~G---~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      ..|.||++.|-|-+   .||+++|+.|+ ..|++|+..++.+
T Consensus         4 ~~L~gK~alVTGass~~GIG~aiA~~la-~~Ga~Vvi~~~~~   44 (297)
T d1d7oa_           4 IDLRGKRAFIAGIADDNGYGWAVAKSLA-AAGAEILVGTWVP   44 (297)
T ss_dssp             CCCTTCEEEEECCSSSSSHHHHHHHHHH-HTTCEEEEEEEHH
T ss_pred             cCCCCCEEEEECCCCCchHHHHHHHHHH-HCCCEEEEEeCch
Confidence            57999999999986   59999999985 7899999887654

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=86.14  E-value=0.24  Score=42.10  Aligned_cols=39  Identities=26%  Similarity=0.316  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++-|-|- +.||+++|+.|+ ..|++|+..|++.+.
T Consensus         2 ~L~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   41 (256)
T d1k2wa_           2 RLDGKTALITGSARGIGRAFAEAYV-REGARVAIADINLEA   41 (256)
T ss_dssp             TTTTEEEEEETCSSHHHHHHHHHHH-HTTEEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            378999999987 689999999985 789999999987643

>d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: GDP-mannose 4,6-dehydratase
species: Escherichia coli [TaxId: 562]

Probab=86.05  E-value=0.58  Score=41.27  Aligned_cols=34  Identities=15%  Similarity=0.145  Sum_probs=26.9

Q ss_pred             CeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          166 QTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       166 ktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      |.+.|.| .|-||+.+++.|. ..|.+|++.|+...
T Consensus         2 K~vLITGatGfiGs~lv~~Ll-~~g~~V~~~~r~~~   36 (357)
T d1db3a_           2 KVALITGVTGQDGSYLAEFLL-EKGYEVHGIKRRAS   36 (357)
T ss_dssp             CEEEEETTTSHHHHHHHHHHH-HTTCEEEEECC---
T ss_pred             CEEEEeCCCcHHHHHHHHHHH-HCcCEEEEEECCCc
Confidence            5667888 8999999999984 67999999998653

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=85.89  E-value=0.52  Score=40.24  Aligned_cols=39  Identities=18%  Similarity=0.157  Sum_probs=33.1

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++.|.|- +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         2 rL~gK~alVTGas~GIG~aia~~la-~~Ga~V~l~~r~~~~   41 (272)
T d1xkqa_           2 RFSNKTVIITGSSNGIGRTTAILFA-QEGANVTITGRSSER   41 (272)
T ss_dssp             TTTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCcCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            378999999986 469999999985 789999999987653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=85.88  E-value=0.3  Score=41.35  Aligned_cols=35  Identities=20%  Similarity=0.309  Sum_probs=30.6

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      ..|+|.|||-|..|-..|..|+ ..|.+|.+++...
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~-~~G~~V~vlE~~~   63 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLA-GAGHQVTVLEASE   63 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHH-HHTCEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHH-HCCCCEEEEeCCC
Confidence            4579999999999999999985 5699999999764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.83  E-value=0.4  Score=39.34  Aligned_cols=34  Identities=18%  Similarity=0.294  Sum_probs=29.4

Q ss_pred             eEEEEecCHHHHHHHHHHHh-cCCcEEEEEcCCch
Q 019387          167 TVGVIGAGRIGSAYARMMVE-GFKMNLIYYDLYQA  200 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~-afg~~V~~~d~~~~  200 (342)
                      +|.|||-|.-|-+.|..|++ .+|.+|.+|+..+.
T Consensus         3 kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~   37 (230)
T d1cjca2           3 QICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLV   37 (230)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSS
T ss_pred             eEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            79999999999999987654 58999999998753

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=85.80  E-value=0.44  Score=40.26  Aligned_cols=40  Identities=23%  Similarity=0.188  Sum_probs=34.1

Q ss_pred             cccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          161 NLLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       161 ~~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      ..|.||++.|.|- +.||+++|+.|+ .-|++|+.++++.+.
T Consensus         6 f~lenKvalITGas~GIG~a~a~~la-~~Ga~V~~~~r~~~~   46 (251)
T d2c07a1           6 YCGENKVALVTGAGRGIGREIAKMLA-KSVSHVICISRTQKS   46 (251)
T ss_dssp             CCCSSCEEEEESTTSHHHHHHHHHHT-TTSSEEEEEESSHHH
T ss_pred             cCCCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEECCHHH
Confidence            4588999999997 479999999984 789999999987653

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=85.80  E-value=0.38  Score=39.40  Aligned_cols=34  Identities=21%  Similarity=0.192  Sum_probs=29.8

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      -|+|.|||-|-.|-+.|..| ..-|.+|.++++..
T Consensus         6 ~~kVvVIGaGiaGl~~A~~L-~~~G~~V~vier~~   39 (268)
T d1c0pa1           6 QKRVVVLGSGVIGLSSALIL-ARKGYSVHILARDL   39 (268)
T ss_dssp             SCEEEEECCSHHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             CCcEEEECccHHHHHHHHHH-HHCCCCEEEEeCCC
Confidence            45899999999999999998 46799999999754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=85.68  E-value=0.35  Score=35.71  Aligned_cols=35  Identities=11%  Similarity=0.038  Sum_probs=28.3

Q ss_pred             CCeEEEEecCHHHHHHHHHHH--hcCCcEEEEEcCCc
Q 019387          165 GQTVGVIGAGRIGSAYARMMV--EGFKMNLIYYDLYQ  199 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~--~afg~~V~~~d~~~  199 (342)
                      .+++.|||-|.+|-++|..++  +..|.+|..+.+.+
T Consensus        18 p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~   54 (117)
T d1feca2          18 PKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGD   54 (117)
T ss_dssp             CSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSS
T ss_pred             CCeEEEECCChHHHHHHHHhHhhcccccccceecccc
Confidence            479999999999999997652  24588999887654

>d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Phenylcoumaran benzylic ether reductase
species: Loblolly pine (Pinus taeda) [TaxId: 3352]

Probab=85.36  E-value=0.53  Score=39.34  Aligned_cols=35  Identities=20%  Similarity=0.212  Sum_probs=29.8

Q ss_pred             CCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          165 GQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      -|+|.|.|- |.||+.+++.|. .-|.+|.++++.+.
T Consensus         3 kkKILVtGatG~iG~~l~~~L~-~~G~~V~~l~R~~~   38 (307)
T d1qyca_           3 RSRILLIGATGYIGRHVAKASL-DLGHPTFLLVREST   38 (307)
T ss_dssp             CCCEEEESTTSTTHHHHHHHHH-HTTCCEEEECCCCC
T ss_pred             CCEEEEECCCcHHHHHHHHHHH-HCCCeEEEEECCCc
Confidence            478999995 999999999984 66999999988654

>d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermotoga maritima [TaxId: 2336]

Probab=84.95  E-value=0.5  Score=39.41  Aligned_cols=37  Identities=19%  Similarity=0.194  Sum_probs=32.5

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      |.||++.|-|- +.||+++|+.|+ .-|++|++.+++.+
T Consensus         2 LkgK~~lVTGas~GIG~aia~~l~-~~Ga~V~~~~r~~~   39 (234)
T d1o5ia_           2 IRDKGVLVLAASRGIGRAVADVLS-QEGAEVTICARNEE   39 (234)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHH-HTTCEEEEEESCHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            78999999997 569999999985 77999999998764

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=84.89  E-value=0.45  Score=40.34  Aligned_cols=38  Identities=21%  Similarity=0.434  Sum_probs=32.6

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .|.||++.|-|-+ .||+++|+.|+ .-|++|+..|++.+
T Consensus         3 rL~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~~~~~   41 (253)
T d1hxha_           3 RLQGKVALVTGGASGVGLEVVKLLL-GEGAKVAFSDINEA   41 (253)
T ss_dssp             TTTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECSCHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHH
Confidence            3889999999854 69999999985 78999999998764

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=84.39  E-value=0.71  Score=39.48  Aligned_cols=39  Identities=23%  Similarity=0.279  Sum_probs=33.7

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++.|-|- +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         2 ~L~gK~alITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   41 (276)
T d1bdba_           2 KLKGEAVLITGGASGLGRALVDRFV-AEGAKVAVLDKSAER   41 (276)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            378999999996 689999999985 679999999987643

>d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: DTDP-4-dehydrorhamnose reductase RfbD
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=84.09  E-value=0.6  Score=38.97  Aligned_cols=32  Identities=22%  Similarity=0.475  Sum_probs=28.5

Q ss_pred             eEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          167 TVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       167 tvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      +|.|.|- |-||+.+++.| ..-|.+|++.|++.
T Consensus         3 KIlItGasGfiG~~l~~~L-~~~g~~Vi~~~r~~   35 (281)
T d1vl0a_           3 KILITGANGQLGREIQKQL-KGKNVEVIPTDVQD   35 (281)
T ss_dssp             EEEEESTTSHHHHHHHHHH-TTSSEEEEEECTTT
T ss_pred             EEEEECCCCHHHHHHHHHH-HhCCCEEEEeechh
Confidence            5899997 99999999998 68899999998764

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=83.90  E-value=0.77  Score=38.61  Aligned_cols=39  Identities=23%  Similarity=0.371  Sum_probs=33.4

Q ss_pred             ccCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++.|-|- +.||+++|+.|+ .-|++|++.+++.+.
T Consensus         3 ~L~gK~alITGas~GIG~aia~~la-~~G~~V~~~~r~~~~   42 (244)
T d1nffa_           3 RLTGKVALVSGGARGMGASHVRAMV-AEGAKVVFGDILDEE   42 (244)
T ss_dssp             TTTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             ccCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            388999999987 569999999985 779999999987643

>d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: L-alanine dehydrogenase-like
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=83.73  E-value=1.1  Score=36.34  Aligned_cols=103  Identities=11%  Similarity=0.053  Sum_probs=64.4

Q ss_pred             HHHHHHHhcCCcEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCEEEEcCCCCcccccccCHHH
Q 019387          179 AYARMMVEGFKMNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADVISLHPVLDKTTYHLINKER  258 (342)
Q Consensus       179 ~vA~~l~~afg~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDiV~l~~pl~~~t~~li~~~~  258 (342)
                      ..++.| ...|.+|++=.-.....  .+.+   +.+..     .+.....+-+++. +||+|+-.-|.+        .+.
T Consensus        21 ~~vkkl-~~~G~~V~VE~gaG~~a--~fsD---~~Y~~-----aGa~i~~~~~~~~-~~diilkv~~p~--------~~e   80 (193)
T d1pjca2          21 SSVRTL-VEAGHTVFIETQAGIGA--GFAD---QDYVQ-----AGAQVVPSAKDAW-SREMVVKVKEPL--------PAE   80 (193)
T ss_dssp             HHHHHH-HTTTCEEEEETTTTGGG--TCCH---HHHHH-----HTCEEESSHHHHH-TSSEEECSSCCC--------GGG
T ss_pred             HHHHHH-HHCCCEEEEEcCccccc--CCCH---HHHHh-----hcceeeecccccc-ccceEEEeccCC--------HHH
Confidence            345666 57899998743322110  0000   00111     1222345666776 589987554432        356


Q ss_pred             HhcCCCCcEEEEcCCCcccCHHHHHHHHHcCCceEEEEecCCCCC
Q 019387          259 LATMKKEAILVNCSRGPVIDEVALVEHLKQNPMFRVGLDVFEVTE  303 (342)
Q Consensus       259 l~~mk~ga~lINvaRG~~vd~~aL~~aL~~g~i~~aaLDV~~~EP  303 (342)
                      ++.||+|.++|-.-..  ....+++++|.+.++...++|.....-
T Consensus        81 ~~~lk~~~~li~~l~p--~~~~ell~~l~~~~it~~s~E~ipr~s  123 (193)
T d1pjca2          81 YDLMQKDQLLFTYLHL--AAARELTEQLMRVGLTAIAYETVELPN  123 (193)
T ss_dssp             GGGCCTTCEEEECCCG--GGCHHHHHHHHHHTCEEEEGGGCCCTT
T ss_pred             HHhhhcCceEEEecCc--ccchHHHHHHHHcCCEEEEeeeccccC
Confidence            8999999999987553  334679999999999999998776654

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=83.56  E-value=0.59  Score=40.80  Aligned_cols=35  Identities=17%  Similarity=0.245  Sum_probs=31.1

Q ss_pred             CCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          165 GQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .|+|.|||.|-.|-.+|..|+ .-|.+|.+++.+..
T Consensus         2 ~KKI~IIGaG~sGL~aA~~L~-k~G~~V~viEk~~~   36 (314)
T d2bi7a1           2 SKKILIVGAGFSGAVIGRQLA-EKGHQVHIIDQRDH   36 (314)
T ss_dssp             CCEEEEECCSHHHHHHHHHHH-TTTCEEEEEESSSS
T ss_pred             CCEEEEECCcHHHHHHHHHHH-hCCCCEEEEECCCC
Confidence            689999999999999999985 56999999998764

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=83.49  E-value=0.53  Score=40.04  Aligned_cols=39  Identities=18%  Similarity=0.366  Sum_probs=32.9

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++.|-|-+ .||+++|+.|+ .-|++|+..|++.+.
T Consensus         3 rL~gKvalITGas~GIG~aia~~la-~~Ga~V~i~~r~~~~   42 (268)
T d2bgka1           3 RLQDKVAIITGGAGGIGETTAKLFV-RYGAKVVIADIADDH   42 (268)
T ss_dssp             TTTTCEEEEESTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            3889999999954 69999999985 679999999987643

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=83.46  E-value=0.41  Score=40.63  Aligned_cols=39  Identities=23%  Similarity=0.322  Sum_probs=33.5

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      .|.||++.|-|-+ .||+++|+.|+ .-|++|+..+++.+.
T Consensus         8 ~L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   47 (255)
T d1fmca_           8 RLDGKCAIITGAGAGIGKEIAITFA-TAGASVVVSDINADA   47 (255)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHH-TTTCEEEEEESCHHH
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            5899999999874 69999999985 789999999987643

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=83.07  E-value=0.29  Score=37.12  Aligned_cols=66  Identities=17%  Similarity=0.158  Sum_probs=40.2

Q ss_pred             eEEEEecCHHHHHHHHHHHhcCCcEEEE-EcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh-cCCEEEEcC
Q 019387          167 TVGVIGAGRIGSAYARMMVEGFKMNLIY-YDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR-EADVISLHP  244 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~afg~~V~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~-~aDiV~l~~  244 (342)
                      +|.|+|.|++|+++++.+...-|+++.+ +|..+...-.             ......+...+.++++.. ..++.++++
T Consensus         5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~-------------~I~Gi~V~~~~~l~~~~~~~i~iai~~i   71 (126)
T d2dt5a2           5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGR-------------PVRGGVIEHVDLLPQRVPGRIEIALLTV   71 (126)
T ss_dssp             EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTC-------------EETTEEEEEGGGHHHHSTTTCCEEEECS
T ss_pred             eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCC-------------EECCEEEecHHHHHHHHhhcccEEEEeC
Confidence            7999999999999998653345778775 5766543200             011122223355666553 355667777


Q ss_pred             C
Q 019387          245 V  245 (342)
Q Consensus       245 p  245 (342)
                      |
T Consensus        72 ~   72 (126)
T d2dt5a2          72 P   72 (126)
T ss_dssp             C
T ss_pred             C
Confidence            6

>d2bkaa1 c.2.1.2 (A:5-236) TAT-interacting protein TIP30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: TAT-interacting protein TIP30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.79  E-value=0.44  Score=39.39  Aligned_cols=76  Identities=13%  Similarity=0.161  Sum_probs=47.4

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHHhcCC--cEEEEEcCCchhHHHHHHhhhhhhhhccCCCCccccccCCHHHHhhcCCE
Q 019387          163 LKGQTVGVIG-AGRIGSAYARMMVEGFK--MNLIYYDLYQATRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLREADV  239 (342)
Q Consensus       163 L~gktvgIvG-~G~IG~~vA~~l~~afg--~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aDi  239 (342)
                      ..+|+|.|.| .|-||+.+++.|.+ -|  -+|++++|++..........    +   ......+....++.+.+..+|+
T Consensus        12 m~~k~IlItGaTG~iG~~l~~~Ll~-~g~~~~v~~~~R~~~~~~~~~~~~----i---~~~~~D~~~~~~~~~~~~~~d~   83 (232)
T d2bkaa1          12 MQNKSVFILGASGETGRVLLKEILE-QGLFSKVTLIGRRKLTFDEEAYKN----V---NQEVVDFEKLDDYASAFQGHDV   83 (232)
T ss_dssp             HTCCEEEEECTTSHHHHHHHHHHHH-HTCCSEEEEEESSCCCCCSGGGGG----C---EEEECCGGGGGGGGGGGSSCSE
T ss_pred             CCCCEEEEECCCcHHHHHHHHHHHh-CCCCCEEEEEecChhhhcccccce----e---eeeeeccccccccccccccccc
Confidence            4578999998 79999999998743 34  38999888764321111000    0   0000112234567778899999


Q ss_pred             EEEcCCC
Q 019387          240 ISLHPVL  246 (342)
Q Consensus       240 V~l~~pl  246 (342)
                      ++.|+..
T Consensus        84 vi~~~~~   90 (232)
T d2bkaa1          84 GFCCLGT   90 (232)
T ss_dssp             EEECCCC
T ss_pred             ccccccc
Confidence            9988754

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=82.65  E-value=0.69  Score=38.98  Aligned_cols=38  Identities=29%  Similarity=0.272  Sum_probs=33.0

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       163 L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      |.||++.|-| -+.||+++|+.|+ .-|++|...+++.+.
T Consensus         3 l~GK~alITGas~GIG~aia~~la-~~G~~V~~~~~~~~~   41 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFA-REGALVALCDLRPEG   41 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESSTTH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            7899999998 6689999999985 789999999987653

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.62  E-value=0.42  Score=40.12  Aligned_cols=38  Identities=18%  Similarity=0.110  Sum_probs=33.3

Q ss_pred             ccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          162 LLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       162 ~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .|.||++.|-|-+ .||+++|+.|+ .-|++|+..++..+
T Consensus         4 sl~gK~~lITGas~GIG~aia~~la-~~Ga~V~~~~r~~~   42 (237)
T d1uzma1           4 PFVSRSVLVTGGNRGIGLAIAQRLA-ADGHKVAVTHRGSG   42 (237)
T ss_dssp             CCCCCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESSSC
T ss_pred             CCCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCcc
Confidence            5899999999987 59999999985 77999999988754

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=82.24  E-value=0.45  Score=40.75  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=32.6

Q ss_pred             cCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          163 LKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       163 L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      |.||++.|-|-+ .||+++|+.|+ .-|++|+..|++.+.
T Consensus         2 L~gK~alITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   40 (274)
T d1xhla_           2 FSGKSVIITGSSNGIGRSAAVIFA-KEGAQVTITGRNEDR   40 (274)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            789999999875 59999999985 679999999987643

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=81.91  E-value=0.66  Score=39.12  Aligned_cols=38  Identities=21%  Similarity=0.177  Sum_probs=32.7

Q ss_pred             cCCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          163 LKGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       163 L~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      |.||++.|-|- +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         4 L~gK~alVTGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   42 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFV-EEGAKVMITGRHSDV   42 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            88999999994 569999999985 679999999987643

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=81.71  E-value=0.87  Score=35.03  Aligned_cols=37  Identities=8%  Similarity=0.007  Sum_probs=31.3

Q ss_pred             ccCCCeEEEE--ecCHHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          162 LLKGQTVGVI--GAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       162 ~L~gktvgIv--G~G~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      ..-++.+.|+  |-|-||-++|..| ..+|++|.+..+.+
T Consensus        36 ~~~~~~vvi~d~ggg~ig~e~A~~l-a~~G~~Vtlv~~~~   74 (156)
T d1djqa2          36 KKIGKRVVILNADTYFMAPSLAEKL-ATAGHEVTIVSGVH   74 (156)
T ss_dssp             SCCCSEEEEEECCCSSHHHHHHHHH-HHTTCEEEEEESSC
T ss_pred             cccCCceEEEecCCChHHHHHHHHH-HHcCCeEEEEecCC
Confidence            3457788887  8899999999998 58999999998765

>d1ebfa1 c.2.1.3 (A:2-150,A:341-359) Homoserine dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Homoserine dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.34  E-value=0.43  Score=37.96  Aligned_cols=29  Identities=38%  Similarity=0.662  Sum_probs=21.6

Q ss_pred             eEEEEecCHHHHHHHHHHHh---cCCcEEEEE
Q 019387          167 TVGVIGAGRIGSAYARMMVE---GFKMNLIYY  195 (342)
Q Consensus       167 tvgIvG~G~IG~~vA~~l~~---afg~~V~~~  195 (342)
                      +|+|+|+|++|+.+++.+.+   .+..+|.+.
T Consensus         6 ~I~l~G~G~VG~~l~~~l~~~~~~l~~~v~~i   37 (168)
T d1ebfa1           6 NVAVIGAGVVGSAFLDQLLAMKSTITYNLVLL   37 (168)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCCCSSEEEEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHHHhHHHhhhheEEE
Confidence            68999999999999988742   234455543

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=81.22  E-value=1.5  Score=36.83  Aligned_cols=35  Identities=34%  Similarity=0.327  Sum_probs=26.8

Q ss_pred             CeEE-EEec-CHHHHHHHHHHHhcCCcEEEEEcCCchh
Q 019387          166 QTVG-VIGA-GRIGSAYARMMVEGFKMNLIYYDLYQAT  201 (342)
Q Consensus       166 ktvg-IvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~~  201 (342)
                      |+|. |-|- +.||+++|+.|+ .-|++|+..+++.+.
T Consensus         1 KKValITGas~GIG~aia~~la-~~Ga~V~~~~r~~~~   37 (255)
T d1gega_           1 KKVALVTGAGQGIGKAIALRLV-KDGFAVAIADYNDAT   37 (255)
T ss_dssp             CCEEEEETTTSHHHHHHHHHHH-HTTCEEEEEESCHHH
T ss_pred             CCEEEEcCCccHHHHHHHHHHH-HCCCEEEEEECCHHH
Confidence            4554 4455 469999999985 679999999987643

>d1rkxa_ c.2.1.2 (A:) CDP-glucose-4,6-dehydratase {Yersinia pseudotuberculosis [TaxId: 633]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: CDP-glucose-4,6-dehydratase
species: Yersinia pseudotuberculosis [TaxId: 633]

Probab=81.07  E-value=0.69  Score=40.21  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=32.3

Q ss_pred             cCCCeEEEEe-cCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          163 LKGQTVGVIG-AGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       163 L~gktvgIvG-~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      ..||+|.|.| -|-||+.+++.| ...|.+|+++++...
T Consensus         6 ~~~KkILVTG~tGfIGs~lv~~L-l~~g~~V~~~~r~~~   43 (356)
T d1rkxa_           6 WQGKRVFVTGHTGFKGGWLSLWL-QTMGATVKGYSLTAP   43 (356)
T ss_dssp             HTTCEEEEETTTSHHHHHHHHHH-HHTTCEEEEEESSCS
T ss_pred             hCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEECCCC
Confidence            3689999999 789999999998 577999999998765

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.05  E-value=0.81  Score=34.69  Aligned_cols=36  Identities=19%  Similarity=0.266  Sum_probs=29.5

Q ss_pred             CCeEEEEecCHHHHHHHHHHH---hcCCcEEEEEcCCch
Q 019387          165 GQTVGVIGAGRIGSAYARMMV---EGFKMNLIYYDLYQA  200 (342)
Q Consensus       165 gktvgIvG~G~IG~~vA~~l~---~afg~~V~~~d~~~~  200 (342)
                      ++++.|||-|.+|-++|..|+   +.+|.+|..+++.+.
T Consensus        37 ~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~   75 (137)
T d1m6ia2          37 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKG   75 (137)
T ss_dssp             CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEeccccc
Confidence            579999999999999997654   357999998887653

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=81.02  E-value=0.44  Score=37.29  Aligned_cols=30  Identities=17%  Similarity=0.119  Sum_probs=24.7

Q ss_pred             CCCeEEEEecCHHHHHHHHHHHhcCCcEEEE
Q 019387          164 KGQTVGVIGAGRIGSAYARMMVEGFKMNLIY  194 (342)
Q Consensus       164 ~gktvgIvG~G~IG~~vA~~l~~afg~~V~~  194 (342)
                      .+++|.|||-|.+|-++|..| +.+|.+|.+
T Consensus         2 ~~~~VvIIGgG~~G~e~A~~l-~~~g~~v~v   31 (185)
T d1q1ra1           2 ANDNVVIVGTGLAGVEVAFGL-RASGWEGNI   31 (185)
T ss_dssp             CSCEEEEECCSHHHHHHHHHH-HHTTCCSEE
T ss_pred             CCCCEEEECCcHHHHHHHHHH-HHcCCceEE
Confidence            367999999999999999997 677765443

>d1dhra_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.00  E-value=0.83  Score=37.92  Aligned_cols=36  Identities=19%  Similarity=0.256  Sum_probs=30.6

Q ss_pred             CCCeEEEEec-CHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          164 KGQTVGVIGA-GRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       164 ~gktvgIvG~-G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      .||+|.|.|- |.||+++|+.|+ .-|++|...|+...
T Consensus         1 egK~vlITGas~GIG~a~a~~l~-~~G~~V~~~~~~~~   37 (236)
T d1dhra_           1 EARRVLVYGGRGALGSRCVQAFR-ARNWWVASIDVVEN   37 (236)
T ss_dssp             CCCEEEEETTTSHHHHHHHHHHH-TTTCEEEEEESSCC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHH-HCCCEEEEEeCCcc
Confidence            4899999998 569999999984 78999998887654

>d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=80.33  E-value=1.3  Score=33.06  Aligned_cols=40  Identities=20%  Similarity=0.277  Sum_probs=34.3

Q ss_pred             ccccCCCeEEEEecCHHHHHHHHHHHhcCCcEEEEEcCCch
Q 019387          160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQA  200 (342)
Q Consensus       160 ~~~L~gktvgIvG~G~IG~~vA~~l~~afg~~V~~~d~~~~  200 (342)
                      +...+||+|.|||-|+.+-.-|..| ..+.-+|+.+-++..
T Consensus        22 ~~~~~~k~V~VvGgGdsA~e~A~~L-~~~a~~V~li~r~~~   61 (126)
T d1trba2          22 GFFYRNQKVAVIGGGNTAVEEALYL-SNIASEVHLIHRRDG   61 (126)
T ss_dssp             GGGGTTSEEEEECSSHHHHHHHHHH-TTTSSEEEEECSSSS
T ss_pred             hHHhCCCEEEEECCCHHHHHHHHHH-hhcCCcEEEEeeccc
Confidence            4556899999999999999999998 589999998877653

>d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Mitochondrial NAD(P)-dependent malic enzyme
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.17  E-value=2  Score=37.22  Aligned_cols=141  Identities=13%  Similarity=0.200  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHhchHHHHHHHHcCCCCCCCCCcccccccCCCeEEEEecCHHHHHHHHHHHhcC---Cc-------EE
Q 019387          123 TAELAASLSLAAARRIVEADEFMRAGLYDGWLPNLFVGNLLKGQTVGVIGAGRIGSAYARMMVEGF---KM-------NL  192 (342)
Q Consensus       123 vAE~~l~~~L~~~R~~~~~~~~~~~g~w~~w~~~~~~~~~L~gktvgIvG~G~IG~~vA~~l~~af---g~-------~V  192 (342)
                      +|=.+++-+++.+|-                     .|+.|...+|.|.|.|.-|-.+|+.+..++   |.       ++
T Consensus         4 Ta~V~lAglinAlki---------------------~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~~g~~~~~a~~~i   62 (294)
T d1pj3a1           4 TAAVALAGLLAAQKV---------------------ISKPISEHKILFLGAGEAALGIANLIVMSMVENGLSEQEAQKKI   62 (294)
T ss_dssp             HHHHHHHHHHHHHHH---------------------HCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHTTCCHHHHHHTE
T ss_pred             HHHHHHHHHHHHHHH---------------------hCCCHHHcEEEEECccHHHHHHHHHHHHHHHhcCCchhhccccE
Confidence            455667777777652                     235688899999999999999999864321   22       48


Q ss_pred             EEEcCCch---hHHHHHHhhhhhhhhccCCCCccccccCCHHHHhh--cCCEEEEcCCCCcccccccCHHHHhc---CCC
Q 019387          193 IYYDLYQA---TRLEKFVTAYGQFLKANGEQPVTWKRASSMDEVLR--EADVISLHPVLDKTTYHLINKERLAT---MKK  264 (342)
Q Consensus       193 ~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~--~aDiV~l~~pl~~~t~~li~~~~l~~---mk~  264 (342)
                      +.+|+..-   .+... ...+...+.....    .....+|+++++  +.|+++-+..    .-++|+++.++.   |.+
T Consensus        63 ~lvD~~Glv~~~r~~~-~~~~k~~~a~~~~----~~~~~~L~e~i~~~kptvliG~S~----~~g~ft~evi~~Ma~~~~  133 (294)
T d1pj3a1          63 WMFDKYGLLVKGRKAK-IDSYQEPFTHSAP----ESIPDTFEDAVNILKPSTIIGVAG----AGRLFTPDVIRAMASINE  133 (294)
T ss_dssp             EEEETTEECBTTCSSC-CCTTTGGGCBCCC----SSCCSSHHHHHHHHCCSEEEECCC----SSCCSCHHHHHHHHHHCS
T ss_pred             EEEeCCCCccCCCCcc-cHHHHHHhhcccc----ccchhHHHHHHHhcCCceEEEecC----CCCcCCHHHHHHHHhcCC
Confidence            88887541   11000 0000011111000    011257898876  7888876642    247899988864   558


Q ss_pred             CcEEEEcCCCcc---cCHHHHHHHHHcCCceEE
Q 019387          265 EAILVNCSRGPV---IDEVALVEHLKQNPMFRV  294 (342)
Q Consensus       265 ga~lINvaRG~~---vd~~aL~~aL~~g~i~~a  294 (342)
                      ..++.=.|.-..   ...++.++. .+|+...|
T Consensus       134 ~PIIFaLSNPt~~~e~~~~~a~~~-t~grai~a  165 (294)
T d1pj3a1         134 RPVIFALSNPTAQAECTAEEAYTL-TEGRCLFA  165 (294)
T ss_dssp             SCEEEECCSSGGGCSCCHHHHHHH-TTTCCEEE
T ss_pred             CcEEEEccCCCCcCCcCHHHHHhh-ccCceEee
Confidence            899998887653   245555555 44555444

>d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.12  E-value=1.2  Score=38.54  Aligned_cols=38  Identities=32%  Similarity=0.350  Sum_probs=32.4

Q ss_pred             cccCCCeEEEEecC-HHHHHHHHHHHhcCCcEEEEEcCCc
Q 019387          161 NLLKGQTVGVIGAG-RIGSAYARMMVEGFKMNLIYYDLYQ  199 (342)
Q Consensus       161 ~~L~gktvgIvG~G-~IG~~vA~~l~~afg~~V~~~d~~~  199 (342)
                      ..|.||++.|-|-+ .||+++|+.|+ .-|++|++.|+..
T Consensus         3 m~l~gKvalITGas~GIG~aiA~~la-~~Ga~Vvi~d~~~   41 (302)
T d1gz6a_           3 LRFDGRVVLVTGAGGGLGRAYALAFA-ERGALVVVNDLGG   41 (302)
T ss_dssp             CCCTTCEEEETTTTSHHHHHHHHHHH-HTTCEEEEECCCB
T ss_pred             cCcCCCEEEEeCCCCHHHHHHHHHHH-HcCCEEEEEeCCc
Confidence            35889999999876 59999999985 7899999998764