Citrus Sinensis ID: 019403

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
MLSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRKEADEAASRVMKWGGSTGEHWTE
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccc
MLSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFItksdgawsgfSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLatrynfpflftnseavAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGillgftfgfgaegiwsgmiggIGLQTLILIVITSITNWRKEADEAASRVMkwggstgehwte
MLSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRKEADEAASRVmkwggstgehwte
MLSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSwllilklgwgligaaiTLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVglplgillgftfgfgAEGIWSGMiggiglqtliliviTSITNWRKEADEAASRVMKWGGSTGEHWTE
***FWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRKEA********************
MLSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRKEADEA*****************
MLSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRKEADEAASRVMKW**********
MLSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRKEADEAASRVMKW**********
ooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
oooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNWRKEADEAASRVMKWGGSTGEHWTE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query341 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.944 0.635 0.5 8e-82
Q9SIA5476 MATE efflux family protei no no 0.947 0.678 0.327 4e-48
Q8GXM8476 MATE efflux family protei no no 0.923 0.661 0.331 6e-48
Q9SIA3476 MATE efflux family protei no no 0.923 0.661 0.337 5e-46
Q8RWF5483 MATE efflux family protei no no 0.967 0.683 0.329 5e-44
Q9LUH2477 MATE efflux family protei no no 0.929 0.664 0.339 5e-44
Q9SIA4476 MATE efflux family protei no no 0.923 0.661 0.325 1e-43
Q9SIA1477 MATE efflux family protei no no 0.944 0.675 0.321 4e-43
Q9LUH3469 MATE efflux family protei no no 0.929 0.675 0.333 8e-43
Q10085455 Uncharacterized transport yes no 0.935 0.701 0.295 2e-27
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  303 bits (777), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 162/324 (50%), Positives = 221/324 (68%), Gaps = 2/324 (0%)

Query: 7   HAGK-FALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGW 65
           H G+ FA  M+PQ++A+AL  P+Q+FLQAQ  V  +A++S  V +LH L +WL+   L +
Sbjct: 169 HEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDF 228

Query: 66  GLIGAAITLNLSWWLIVILQLLYIFITKS-DGAWSGFSWLAFADLWAFVKLSLASAVMLC 124
           GL+GAA+ L+ SWWL+V +  +YI ++ +    W+GFS  AF  +W + KL++ASAVMLC
Sbjct: 229 GLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLC 288

Query: 125 LEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNA 184
           LE WY   LV+I+G L N  I++DAIS+CM    WD    +G +AAISVRVSNELGAGN 
Sbjct: 289 LEIWYNQGLVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNP 348

Query: 185 RAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMN 244
           R A  SV+VV+IT V I     ++VL  R      FT+   V A  + L  LLA+++ +N
Sbjct: 349 RVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLN 408

Query: 245 CLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQ 304
            +QP+LSGVA+G+GWQ++VAY+NL  YY++GLP+G +LGF    G  GIW GMI G+ LQ
Sbjct: 409 GIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQ 468

Query: 305 TLILIVITSITNWRKEADEAASRV 328
           TL LIV+T  TNW  E + AA RV
Sbjct: 469 TLTLIVLTLKTNWTSEVENAAQRV 492
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q10085|YAO6_SCHPO Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.06 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
255538528 483 multidrug resistance pump, putative [Ric 0.976 0.689 0.816 1e-155
356564231 483 PREDICTED: protein TRANSPARENT TESTA 12- 0.964 0.681 0.790 1e-144
356564233 487 PREDICTED: protein TRANSPARENT TESTA 12- 0.973 0.681 0.783 1e-144
356552151 483 PREDICTED: protein TRANSPARENT TESTA 12- 0.964 0.681 0.775 1e-141
225458414 479 PREDICTED: protein TRANSPARENT TESTA 12 0.976 0.695 0.792 1e-140
147855628 459 hypothetical protein VITISV_019245 [Viti 0.976 0.725 0.792 1e-140
297846968 484 hypothetical protein ARALYDRAFT_473896 [ 0.967 0.681 0.754 1e-140
15220246 484 MATE efflux family protein [Arabidopsis 0.967 0.681 0.748 1e-139
16604505 484 At1g47530/F16N3_20 [Arabidopsis thaliana 0.967 0.681 0.748 1e-139
357438069 473 Protein TRANSPARENT TESTA [Medicago trun 0.920 0.663 0.739 1e-131
>gi|255538528|ref|XP_002510329.1| multidrug resistance pump, putative [Ricinus communis] gi|223551030|gb|EEF52516.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  553 bits (1426), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 272/333 (81%), Positives = 302/333 (90%)

Query: 6   DHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGW 65
           + AGKFA+WMLPQLFAYA+NFPIQKFLQ+Q KV VMAWISA VLVLHA+FSWLLILKLGW
Sbjct: 151 EAAGKFAIWMLPQLFAYAVNFPIQKFLQSQSKVYVMAWISAAVLVLHAIFSWLLILKLGW 210

Query: 66  GLIGAAITLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCL 125
           GL GAAITLN SWW+IVI QLLYIFITKSDGAWSGF+WLAFADL  FVKLSLASAVMLCL
Sbjct: 211 GLTGAAITLNTSWWIIVIAQLLYIFITKSDGAWSGFTWLAFADLGGFVKLSLASAVMLCL 270

Query: 126 EFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNAR 185
           EFWYLM+LVVITGRLPN LI VDAIS+CMN+QGWDAMIA+GFNAAISVRVSNELGAGN+R
Sbjct: 271 EFWYLMILVVITGRLPNPLIPVDAISICMNLQGWDAMIALGFNAAISVRVSNELGAGNSR 330

Query: 186 AAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNC 245
            AK+SV VVS+T+++IGV C  LV ATR  FP+LFT S+AVA ETTKL++LL ITVL+N 
Sbjct: 331 RAKYSVKVVSVTSISIGVVCMALVFATRDYFPYLFTTSDAVAKETTKLAVLLGITVLLNS 390

Query: 246 LQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQT 305
           LQPVLSGVAVGAGWQSLVAYIN+GCYY+VGLP GILLGFTFGFGA G+WSGMIGGI LQT
Sbjct: 391 LQPVLSGVAVGAGWQSLVAYINIGCYYVVGLPAGILLGFTFGFGAMGVWSGMIGGICLQT 450

Query: 306 LILIVITSITNWRKEADEAASRVMKWGGSTGEH 338
           +ILI++TSITNW KEA+EA SRV KWGG+  EH
Sbjct: 451 IILIIVTSITNWNKEAEEAESRVKKWGGAAAEH 483

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356564231|ref|XP_003550359.1| PREDICTED: protein TRANSPARENT TESTA 12-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356564233|ref|XP_003550360.1| PREDICTED: protein TRANSPARENT TESTA 12-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|356552151|ref|XP_003544433.1| PREDICTED: protein TRANSPARENT TESTA 12-like [Glycine max] Back     alignment and taxonomy information
>gi|225458414|ref|XP_002281913.1| PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera] gi|302142423|emb|CBI19626.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147855628|emb|CAN79163.1| hypothetical protein VITISV_019245 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297846968|ref|XP_002891365.1| hypothetical protein ARALYDRAFT_473896 [Arabidopsis lyrata subsp. lyrata] gi|297337207|gb|EFH67624.1| hypothetical protein ARALYDRAFT_473896 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15220246|ref|NP_175184.1| MATE efflux family protein [Arabidopsis thaliana] gi|5668808|gb|AAD46034.1|AC007519_19 F16N3.20 [Arabidopsis thaliana] gi|332194060|gb|AEE32181.1| MATE efflux family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|16604505|gb|AAL24258.1| At1g47530/F16N3_20 [Arabidopsis thaliana] gi|27764936|gb|AAO23589.1| At1g47530/F16N3_20 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357438069|ref|XP_003589310.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355478358|gb|AES59561.1| Protein TRANSPARENT TESTA [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.967 0.681 0.657 1.5e-113
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.964 0.660 0.489 4.1e-81
TAIR|locus:2028115515 AT1G23300 "AT1G23300" [Arabido 0.967 0.640 0.472 2.2e-80
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.976 0.637 0.477 1.2e-79
TAIR|locus:2126036542 AT4G00350 "AT4G00350" [Arabido 0.950 0.597 0.473 1.4e-78
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.967 0.66 0.475 3e-78
TAIR|locus:2089955506 AT3G21690 "AT3G21690" [Arabido 0.967 0.652 0.453 2.2e-73
TAIR|locus:2036848501 AT1G61890 "AT1G61890" [Arabido 0.950 0.646 0.452 4.1e-72
TAIR|locus:2027322503 AT1G11670 "AT1G11670" [Arabido 0.950 0.644 0.446 2.9e-71
TAIR|locus:2168210486 AT5G65380 "AT5G65380" [Arabido 0.956 0.670 0.416 3.1e-67
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
 Identities = 217/330 (65%), Positives = 252/330 (76%)

Query:     8 AGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSXXXXXXXXXXX 67
             AGKFALWM+PQLFAYA NFPIQKFLQ+QRKVLVMAWIS +VLV+HA+FS           
Sbjct:   155 AGKFALWMIPQLFAYAANFPIQKFLQSQRKVLVMAWISGVVLVIHAVFSWLFILYFKWGL 214

Query:    68 XXXXXTLNLSWWLIVILQLLYIFITKSDGAWSGFSWLAFADLWAFVKLSLASAVMLCLEF 127
                  TLN SWWLIVI QLLYI ITKSDGAW+GFS LAF DL+ FVKLSLASA+MLCLEF
Sbjct:   215 VGAAITLNTSWWLIVIGQLLYILITKSDGAWTGFSMLAFRDLYGFVKLSLASALMLCLEF 274

Query:   128 WYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAA 187
             WYLM+LVV+TG LPN LI VDAIS+CMNI+GW AMI+IGFNAAISVRVSNELGAGNA  A
Sbjct:   275 WYLMVLVVVTGLLPNPLIPVDAISICMNIEGWTAMISIGFNAAISVRVSNELGAGNAALA 334

Query:   188 KFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQ 247
             KFSV+VVSIT+  IG+ C I+VLAT+ +FP+LFT+SEAVAAETT++++LL  TVL+N LQ
Sbjct:   335 KFSVIVVSITSTLIGIVCMIVVLATKDSFPYLFTSSEAVAAETTRIAVLLGFTVLLNSLQ 394

Query:   248 PVLSGVAVGAGWQSLVAYINLGCYYIVXXXXXXXXXXXXXXXAEGIWSGMXXXXXXXXXX 307
             PVLSGVAVGAGWQ+LVAY+N+ CYYI+                +GIW GM          
Sbjct:   395 PVLSGVAVGAGWQALVAYVNIACYYIIGLPAGLVLGFTLDLGVQGIWGGMVAGICLQTLI 454

Query:   308 XXXXTSITNWRKEADEAASRVMKWGGSTGE 337
                    TNW KEA++A SRV +WGG+  E
Sbjct:   455 LIGIIYFTNWNKEAEQAESRVQRWGGTAQE 484
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0009835 "fruit ripening" evidence=ISS
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-109
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 2e-30
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 4e-28
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 9e-28
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 5e-24
pfam01554161 pfam01554, MatE, MatE 4e-20
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 4e-17
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 6e-17
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 1e-14
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-14
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 4e-14
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 4e-12
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 2e-11
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 3e-11
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 9e-09
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 6e-07
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 2e-06
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 1e-05
cd12082 420 cd12082, MATE_like, Multidrug and toxic compound e 6e-04
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  326 bits (838), Expect = e-109
 Identities = 146/315 (46%), Positives = 208/315 (66%), Gaps = 2/315 (0%)

Query: 8   AGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLGWGL 67
           AG++  W++P LFAYAL  P++++LQAQ  VL + +IS + L+L+ L ++LL+  LG G 
Sbjct: 121 AGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGLGF 180

Query: 68  IGAAITLNLSWWLIVILQLLYIFITKSDGA-WSGFSWLAFADLWAFVKLSLASAVMLCLE 126
           IGAA+  ++S+WLIV+L LLYIF +K   A W GFS  AF     F+KL++ SA+MLCLE
Sbjct: 181 IGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLCLE 240

Query: 127 FWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARA 186
           +W   +LV++ G LP   +A+ A S+C+       MI +G + A SVRV NELGAGN + 
Sbjct: 241 WWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNPKR 299

Query: 187 AKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCL 246
           AK + +V  I ++ IGV   IL+L  R  + +LFT+ E V A    L  +LA+  + + L
Sbjct: 300 AKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFDGL 359

Query: 247 QPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTL 306
           Q VLSGV  G G Q L AY+NL  YY++GLP+G+LL F  G G +G+W G+I G+ LQ +
Sbjct: 360 QAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQAV 419

Query: 307 ILIVITSITNWRKEA 321
           IL++I   T+W KEA
Sbjct: 420 ILLLIILRTDWDKEA 434

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 341
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 99.97
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 99.97
TIGR00797342 matE putative efflux protein, MATE family. The MAT 99.96
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.96
PRK15099416 O-antigen translocase; Provisional 99.95
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.95
PRK00187 464 multidrug efflux protein NorA; Provisional 99.95
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.95
PRK10189 478 MATE family multidrug exporter; Provisional 99.94
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.94
PRK01766 456 multidrug efflux protein; Reviewed 99.93
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.93
PRK10459492 colanic acid exporter; Provisional 99.86
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.86
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.86
COG2244480 RfbX Membrane protein involved in the export of O- 99.82
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.61
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.55
TIGR01695 502 mviN integral membrane protein MviN. This model re 99.47
PRK15099 416 O-antigen translocase; Provisional 99.4
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.16
PF03023 451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.14
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.93
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.83
COG0728 518 MviN Uncharacterized membrane protein, putative vi 98.75
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.75
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.6
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.39
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.28
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.22
PRK10459 492 colanic acid exporter; Provisional 98.21
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.13
COG2244 480 RfbX Membrane protein involved in the export of O- 97.39
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 97.22
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 96.77
COG4267 467 Predicted membrane protein [Function unknown] 89.87
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 85.95
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=5.6e-47  Score=352.07  Aligned_cols=321  Identities=26%  Similarity=0.359  Sum_probs=303.1

Q ss_pred             cchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH-hC-CCcchHHHHHHHHHH
Q 019403            2 LSFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-LG-WGLIGAAITLNLSWW   79 (341)
Q Consensus         2 ~~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~-~~-~g~~gaalat~is~~   79 (341)
                      .|+.+.|.+|++++.++.|+..++.++++.+|+.||+|.|++.++.++++|+++||+|+++ ++ ||+.|+|+||++++.
T Consensus       129 ~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~  208 (455)
T COG0534         129 AEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARW  208 (455)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHH
Confidence            3589999999999999999999999999999999999999999999999999999999998 67 999999999999999


Q ss_pred             HHHHHHHHHHHHhcc--CCcCCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHH
Q 019403           80 LIVILQLLYIFITKS--DGAWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQ  157 (341)
Q Consensus        80 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~i~  157 (341)
                      +.++.+++++++++.  .....+..+++++.+|++++.|+|..++++.+...+...+.+++++|++  ++|+|+++.++.
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~  286 (455)
T COG0534         209 IGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIA  286 (455)
T ss_pred             HHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHH
Confidence            999999999998742  2222334466789999999999999999999999999999999999976  999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHH
Q 019403          158 GWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILL  237 (341)
Q Consensus       158 ~~~~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~i~  237 (341)
                      ++..++..|++++++++++|++|+||+|++++..+.+..+++.++...++.++.+++++.++|++|+|+.+.+.+++++.
T Consensus       287 ~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~  366 (455)
T COG0534         287 SFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIA  366 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhcCH
Q 019403          238 AITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFTFGFGAEGIWSGMIGGIGLQTLILIVITSITNW  317 (341)
Q Consensus       238 ~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~~~~g~~G~~~a~~~~~~~~~~~~~~~~~~~~~  317 (341)
                      ...+++++.+.+..+.+||.||++.++..++.+.|++.+|+.+++.... +|..|+|+++.+++.++.+...+++++.+|
T Consensus       367 ~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~  445 (455)
T COG0534         367 ALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRW  445 (455)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999865 999999999999999999999999999998


Q ss_pred             HHHHHHHH
Q 019403          318 RKEADEAA  325 (341)
Q Consensus       318 ~~~~~~~~  325 (341)
                      +++..+.+
T Consensus       446 ~~~~~~~~  453 (455)
T COG0534         446 RRKAVAAA  453 (455)
T ss_pred             hhhhhhcc
Confidence            88665543

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-05
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/178 (23%), Positives = 78/178 (43%), Gaps = 5/178 (2%)
Query: 78  WWLIVILQLLYIFITKSDG---AWSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLV 134
           +W++++L L YI  +K       +  F      +L    +L    A  L  E     ++ 
Sbjct: 203 YWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVA 262
Query: 135 VITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVV 194
           ++   L + ++A  A  V +N      M  +   AA+S+RV ++LG  + + A  +  V 
Sbjct: 263 LLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVG 320
Query: 195 SITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAITVLMNCLQPVLSG 252
            +T +       +L +  R     L+T ++ V A   +L +  AI   M+ +Q V +G
Sbjct: 321 LMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAG 378
  Database: pdbaa

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 6e-44
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  155 bits (395), Expect = 6e-44
 Identities = 70/315 (22%), Positives = 131/315 (41%), Gaps = 14/315 (4%)

Query: 8   AGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILKLG--- 64
              +   ++  + AY L   ++ F            I  I L+L+   +W+ +       
Sbjct: 129 TVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAP 188

Query: 65  -WGLIGAAITLNLSWWLIVILQLLYIFITKSD---GAWSGFSWLAFADLWAFVKLSLASA 120
             G +G  +   + +W++++L L YI  +K       +  F      +L    +L    A
Sbjct: 189 ELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVA 248

Query: 121 VMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMNIQGWDAMIAIGFNAAISVRVSNELG 180
             L  E     ++ ++   L + ++A  A  V +N      M  +   AA+S+RV ++LG
Sbjct: 249 AALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAVSIRVGHKLG 306

Query: 181 AGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSILLAIT 240
             + + A  +  V  +T +       +L +  R     L+T ++ V A   +L +  AI 
Sbjct: 307 EQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIY 366

Query: 241 VLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFT-----FGFGAEGIWS 295
             M+ +Q V +G   G    + + +     Y+++GLP G +LG T        GA+G W 
Sbjct: 367 QCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWL 426

Query: 296 GMIGGIGLQTLILIV 310
           G I G+    L+L  
Sbjct: 427 GFIIGLSAAALMLGQ 441
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.86
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=2.2e-38  Score=296.18  Aligned_cols=311  Identities=23%  Similarity=0.369  Sum_probs=286.0

Q ss_pred             chHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHH-h---CCCcchHHHHHHHHH
Q 019403            3 SFWDHAGKFALWMLPQLFAYALNFPIQKFLQAQRKVLVMAWISAIVLVLHALFSWLLILK-L---GWGLIGAAITLNLSW   78 (341)
Q Consensus         3 ~~~~~a~~y~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~l~i~~-~---~~g~~gaalat~is~   78 (341)
                      |+.+.+.+|++++.++.|+..+...+++++|+.||++.++..++++.++|+++++++++. +   ++|+.|+++|+.+++
T Consensus       124 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~  203 (460)
T 3mkt_A          124 AMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVY  203 (460)
T ss_dssp             HHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHH
Confidence            567899999999999999999999999999999999999999999999999999999975 4   799999999999999


Q ss_pred             HHHHHHHHHHHHHhccCC--c-CCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 019403           79 WLIVILQLLYIFITKSDG--A-WSGFSWLAFADLWAFVKLSLASAVMLCLEFWYLMLLVVITGRLPNALIAVDAISVCMN  155 (341)
Q Consensus        79 ~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~k~il~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~aa~~~~~~  155 (341)
                      .+..++..+++++++...  + ++++.+.+++.+|++++.++|..++++.....+.+++.+++++|++  ++++|+++.+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~  281 (460)
T 3mkt_A          204 WIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALN  281 (460)
T ss_dssp             HHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHH
Confidence            999999888887663211  1 1223345678899999999999999999999999999999999876  8999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHH
Q 019403          156 IQGWDAMIAIGFNAAISVRVSNELGAGNARAAKFSVLVVSITAVTIGVCCTILVLATRYNFPFLFTNSEAVAAETTKLSI  235 (341)
Q Consensus       156 i~~~~~~i~~~~~~a~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~~~~~~~~~~~~~~  235 (341)
                      +.++...+..+++++..|.+++++|+||.|+.++..+++.++++.++++.++.+.++++++.++|++|+++.+.+..+++
T Consensus       282 i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~  361 (460)
T 3mkt_A          282 FSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLL  361 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             HHHHHHHHhhHHHHHHHHHhhcCcchhhHHHHHHHHHHhhhhHHhHHHHh----cC-CCcchhhHHHHHHHHHHHHHHHH
Q 019403          236 LLAITVLMNCLQPVLSGVAVGAGWQSLVAYINLGCYYIVGLPLGILLGFT----FG-FGAEGIWSGMIGGIGLQTLILIV  310 (341)
Q Consensus       236 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~l~~~~ii~i~~~~~l~~~----~~-~g~~G~~~a~~~~~~~~~~~~~~  310 (341)
                      +++++.++.+++....+++++.||++.++..++.+.|++++|+++++...    ++ +|+.|+|+++.+++.+.+++..+
T Consensus       362 ~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~  441 (460)
T 3mkt_A          362 FAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQ  441 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999986    56 99999999999999999887766


Q ss_pred             HHHhc
Q 019403          311 ITSIT  315 (341)
Q Consensus       311 ~~~~~  315 (341)
                      ++++.
T Consensus       442 ~~~~~  446 (460)
T 3mkt_A          442 RLYWL  446 (460)
T ss_dssp             SSSSS
T ss_pred             HHHHH
Confidence            55554
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00