Citrus Sinensis ID: 019406

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MSLKLNYLKYQLSLKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQNFDNELENARHLEFLTQKIELLASESNYKL
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHcccccccccccccccccEEccccccccccccHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccHHHHHHccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHcccHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccEEccccHHHHHHHHcccccccccccccccHHHHccHHHHHcHHHHHHHHHccccccccccccccccccccccccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEcccccHHcHHHHHHHcccccccccccccccccccccccHHHHccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccEEcccccccccccccHHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MSLKLNYLKYQLSLKQLLTFSFsqgfrkidtdrwefandgfvrDQKHLLNNICrrkntqgseqrKSLQQSEKlvepcekiDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVtevgepiasdnmlvryhppidetpkpvlkpvtdsgnqmasdtsdgmkdVFMNIDFLKMLMdenqapfipldlhndgewEKLLLanpildnsedtqvdkdkevdkeghtdvdmeaepavsgseleRLNNLELLLQELDKSQNFDNELENARHLEFLTQKIELLASESNYKL
Flexible Loop (DISEMBL)
MSLKLNYLKYQLSLKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICrrkntqgseqrkslqqseklvepcEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTDSGNqmasdtsdgmKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLAnpildnsedtqvdkdkevdkeghtdvdmeaepavsgselERLNNLELLLQELDKSQNFDNELENARHLEFLTQKiellasesnykl
Low Complexity Region (SEG)
MslklnylkyqlslkqllTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSelerlnnlelllqelDKSQNFDNELENARHLEFLTQKIELLASESNYKL
Disordered region (IsUnstruct)
****LNYLKYQLSLKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICR************************KIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV********QMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVG**I****MLVRY*******************************DVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLL*******************************************************************HLEFLTQKI***********
Disordered Region (DISOPRED)
MSLKLNYLKYQLSLKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLN*************************************************TQELLKLRQYQETADNKLLL*R*******KSQQQMLSFLVMA***********************************************************************************************************************************************************************************RHLEFLTQKIELL********
Disordered Region (DISEMBL)
MSLKLNYLKYQLSLKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRK*****************VEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQNFDNELENARHLEFLTQKIELLASESNYKL
Disordered Region (DISPRO)
MSLKLNYLKYQLSLKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICR****************************SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRM*******************DNMLVRYHPPIDETPKPVLKPVTDSGN*******DGMKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPILD********************VDMEAEP*VSGSELERLNNLELLLQELDKSQNFDNELENARHLEFLTQKIELLAS******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLKLNYLKYQLSLKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQNFDNELENARHLEFLTQKIELLASESNYKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
Q9S7U5	374	Heat stress transcription	yes	no	0.844	0.770	0.477	8e-66
Q84T61	506	Heat stress transcription	yes	no	0.542	0.365	0.427	4e-35
Q9LQM7	485	Heat stress transcription	no	no	0.536	0.377	0.407	3e-32
Q40152	527	Heat shock factor protein	N/A	no	0.536	0.347	0.408	3e-32
P41153	527	Heat shock factor protein	N/A	no	0.536	0.347	0.408	1e-30
P41151	495	Heat stress transcription	no	no	0.504	0.347	0.433	1e-30
O81821	481	Heat stress transcription	no	no	0.536	0.380	0.389	5e-28
Q10PR4	410	Heat stress transcription	no	no	0.659	0.548	0.321	6e-25
Q6VBB2	372	Heat stress transcription	no	no	0.390	0.357	0.440	2e-23
Q9LUH8	406	Heat stress transcription	no	no	0.431	0.362	0.411	2e-23

>sp|Q9S7U5|HSFA8_ARATH Heat stress transcription factor A-8 OS=Arabidopsis thaliana GN=HSFA8 PE=2 SV=1

 Score =  251 bits (640), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 151/316 (47%), Positives = 193/316 (61%), Gaps = 28/316 (8%)

Query: 25  GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
           GFRK+D DRWEFANDGFVR QK LL N+ RRKN Q SEQ K    S    +     + S 
Sbjct: 80  GFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQSSEQSKHESTSTTYAQ-----EKSG 134

Query: 85  LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144
           LWKEV+ LK  K  L QEL+K+RQYQE  D K+L L DRVQGME+SQQ+MLSFLVM M+N
Sbjct: 135 LWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRVQGMEESQQEMLSFLVMVMKN 194

Query: 145 PSFLVQLLQPKE-NNWRMA-EAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPV 202
           PS LVQLLQPKE N WR A E   ++EEVT+ GE  +    LV Y PP D          
Sbjct: 195 PSLLVQLLQPKEKNTWRKAGEGAKIVEEVTDEGESNSYGLPLVTYQPPSD---------- 244

Query: 203 TDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPILDNS 262
               N  A   S+ + D   N D LK  +DEN  P I  DL++DG WEKLLL +P     
Sbjct: 245 ---NNGTAKSNSNDVNDFLRNADMLKFCLDENHVPLIIPDLYDDGAWEKLLLLSP----- 296

Query: 263 EDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQNFD-NEL--EN 319
              +  K + + K+G  D+ +E E      EL++   L+L+ +E++K  +F+  +L  E 
Sbjct: 297 SRKKTKKQENIVKKGKDDLTLEEEEEDGTMELDKSYMLKLISEEMEKPDDFEFGQLTPER 356

Query: 320 ARHLEFLTQKIELLAS 335
           +R+LE LT+++ELLAS
Sbjct: 357 SRNLEILTEQMELLAS 372

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Arabidopsis thaliana (taxid: 3702)

>sp|Q84T61|HSFA1_ORYSJ Heat stress transcription factor A-1 OS=Oryza sativa subsp. japonica GN=HSFA1 PE=2 SV=1

 Score =  149 bits (375), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 83/194 (42%), Positives = 116/194 (59%), Gaps = 9/194 (4%)

Query: 14  LKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKL 73
           ++QL T+    GFRK+D DRWEFAN+GF+R QKHLL  I RRK T G+ Q +  Q     
Sbjct: 90  VRQLNTY----GFRKVDPDRWEFANEGFLRGQKHLLKTINRRKPTHGNNQVQQPQLPAAP 145

Query: 74  VEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 133
           V  C ++    + +E+E LK  KN L QEL++LRQ Q+T D++L  L  R+QGME+ QQQ
Sbjct: 146 VPACVEVGKFGMEEEIEMLKRDKNVLMQELVRLRQQQQTTDHQLQTLGKRLQGMEQRQQQ 205

Query: 134 MLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGTMLEEVTEV-----GEPIASDNMLVRYH 188
           M+SFL  AM +P FL Q +Q  EN+ R   A      + +       E  + D  +V+Y 
Sbjct: 206 MMSFLAKAMHSPGFLAQFVQQNENSRRRIVASNKKRRLPKQDGSLDSESASLDGQIVKYQ 265

Query: 189 PPIDETPKPVLKPV 202
           P I+E  K +L+ +
Sbjct: 266 PMINEAAKAMLRKI 279

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LQM7|HFA1D_ARATH Heat stress transcription factor A-1d OS=Arabidopsis thaliana GN=HSFA1D PE=2 SV=2

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/199 (40%), Positives = 113/199 (56%), Gaps = 16/199 (8%)

Query: 14  LKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSE-- 71
           ++QL T+    GFRK+D DRWEFAN+GF+R QKHLL +I RRK   G  Q     Q    
Sbjct: 90  VRQLNTY----GFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNG 145

Query: 72  --KLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEK 129
               V  C ++    L +EVE LK  KN L QEL++LRQ Q++ DN+L  +  R+QGME 
Sbjct: 146 QNSSVSACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMEN 205

Query: 130 SQQQMLSFLVMAMQNPSFLVQLL----QPKENNWRMAEAGT----MLEEVTEVGEPIASD 181
            QQQ++SFL  A+Q+P FL Q L    Q  E+N R+++         + +    +    D
Sbjct: 206 RQQQLMSFLAKAVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRFKRDGIVRNNDSATPD 265

Query: 182 NMLVRYHPPIDETPKPVLK 200
             +V+Y PP+ E  K + K
Sbjct: 266 GQIVKYQPPMHEQAKAMFK 284

Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q40152|HSF8_SOLLC Heat shock factor protein HSF8 OS=Solanum lycopersicum GN=HSF8 PE=3 SV=1

 Score =  139 bits (350), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 118/203 (58%), Gaps = 20/203 (9%)

Query: 14  LKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQG-----------SE 62
           ++QL T+    GFRK+D DRWEFAN+GF+R QKHLL +I RRK   G           ++
Sbjct: 92  VRQLNTY----GFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGNAQ 147

Query: 63  QRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRD 122
           Q+         V  C ++    L +EVE LK  KN L QEL++LRQ Q+  DN+L  +  
Sbjct: 148 QQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQATDNQLQGMVQ 207

Query: 123 RVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPK-ENNWRMAEAGT--MLEEVTEVGEP-- 177
           R+QGME  QQQM+SFL  A+  P FL Q +Q + E+N R+AE      +++  E  +P  
Sbjct: 208 RLQGMELRQQQMMSFLAKAVNRPGFLAQFVQQQNESNKRIAEGSKKRRIKQDIESQDPSV 267

Query: 178 IASDNMLVRYHPPIDETPKPVLK 200
             +D  +V+Y P I+E  K +L+
Sbjct: 268 TPADGQIVKYQPGINEAAKAMLR 290

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum lycopersicum (taxid: 4081)

>sp|P41153|HSF8_SOLPE Heat shock factor protein HSF8 OS=Solanum peruvianum GN=HSF8 PE=2 SV=1

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 83/203 (40%), Positives = 119/203 (58%), Gaps = 20/203 (9%)

Query: 14  LKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKL 73
           ++QL T+    GFRK+D DRWEFAN+GF+R QKHLL +I RRK   G  Q++        
Sbjct: 94  VRQLNTY----GFRKVDPDRWEFANEGFLRGQKHLLKSISRRKPAHGHAQQQQQPHGHAQ 149

Query: 74  -----------VEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRD 122
                      V  C ++    L +EVE LK  KN L QEL++LRQ Q++ DN+L  +  
Sbjct: 150 QQMQPPGHSASVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQGMVQ 209

Query: 123 RVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPK-ENNWRMAEAGT--MLEEVTEVGEP-- 177
           R+QGME  QQQM+SFL  A+ +P FL Q +Q + E+N R+AE      +++  E  +P  
Sbjct: 210 RLQGMELRQQQMMSFLAKAVNSPGFLAQFVQQQNESNKRIAEGSKKRRIKQDIESQDPSV 269

Query: 178 IASDNMLVRYHPPIDETPKPVLK 200
             +D  +V+Y P I+E  K +L+
Sbjct: 270 TPADGQIVKYQPGINEAAKAMLR 292

DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription.

Solanum peruvianum (taxid: 4082)

>sp|P41151|HFA1A_ARATH Heat stress transcription factor A-1a OS=Arabidopsis thaliana GN=HSFA1A PE=1 SV=2

 Score =  134 bits (336), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 85/196 (43%), Positives = 115/196 (58%), Gaps = 24/196 (12%)

Query: 14  LKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSE-- 71
           ++QL T+    GFRK+D DRWEFAN+GF+R QKHLL  I RRK+ QG     S  QS+  
Sbjct: 105 VRQLNTY----GFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQL 160

Query: 72  -------KLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRV 124
                    +  C ++    L +EVE LK  KN L QEL+KLRQ Q+T DNKL +L   +
Sbjct: 161 SQGQGSMAALSSCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHL 220

Query: 125 QGMEKSQQQMLSFLVMAMQNPSFLVQLLQPK-ENNWRMAEAGT---MLEEVTEVGEPI-- 178
           Q ME+ QQQ++SFL  A+QNP+FL Q +Q + ++N  + EA     + E+ T   E    
Sbjct: 221 QVMEQRQQQIMSFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKKRRLREDSTAATESNSH 280

Query: 179 -----ASDNMLVRYHP 189
                ASD  +V+Y P
Sbjct: 281 SHSLEASDGQIVKYQP 296

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|O81821|HFA1B_ARATH Heat stress transcription factor A-1b OS=Arabidopsis thaliana GN=HSFA1B PE=2 SV=2

 Score =  125 bits (314), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 76/195 (38%), Positives = 117/195 (60%), Gaps = 12/195 (6%)

Query: 14  LKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKL 73
           ++QL T+    GFRK+D DRWEFAN+GF+R +K LL +I RRK +   + ++  Q     
Sbjct: 80  VRQLNTY----GFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSS 135

Query: 74  VEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 133
           V  C ++    + +EVE LK  KN L QEL++LRQ Q+  +N+L  +  +VQ ME+ QQQ
Sbjct: 136 VGACVEVGKFGIEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQ 195

Query: 134 MLSFLVMAMQNPSFLVQLLQPKENNWRMAEAGT------MLEEVTEVGEPIAS--DNMLV 185
           M+SFL  A+Q+P FL QL+Q   N+      G+       ++E    G+ +A+  +  +V
Sbjct: 196 MMSFLAKAVQSPGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGDNVANGLNRQIV 255

Query: 186 RYHPPIDETPKPVLK 200
           RY P I+E  + +L+
Sbjct: 256 RYQPSINEAAQNMLR 270

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

>sp|Q10PR4|HSFA9_ORYSJ Heat stress transcription factor A-9 OS=Oryza sativa subsp. japonica GN=HSFA9 PE=2 SV=1

 Score =  115 bits (287), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 90/280 (32%), Positives = 136/280 (48%), Gaps = 55/280 (19%)

Query: 14  LKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQ---GSEQRKSLQQS 70
           ++QL T+    GFRK+  DRWE+AN+GF+  QKHLL  I RRK +     SE +K+  ++
Sbjct: 102 IRQLNTY----GFRKVHPDRWEWANEGFIMGQKHLLKTIKRRKKSSQESPSEIQKAPVKT 157

Query: 71  EKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKS 130
               E  E   +  L KEVE LK  K  L Q+L+ LR YQ+T++ ++  L +R+Q ME++
Sbjct: 158 APGTENIEIGKYGGLEKEVETLKRDKALLMQQLVDLRHYQQTSNLEVQNLIERLQVMEQN 217

Query: 131 QQQMLSFLVMAMQNPSFLVQLL----QPKENNW-----------RMAEAGTMLEEVTEVG 175
           QQQM++ L + +QNPSFL QL+    Q + +NW              E G + ++ T   
Sbjct: 218 QQQMMALLAIVVQNPSFLNQLVQQQQQQRRSNWWSPDGSKKRRFHALEQGPVTDQETS-- 275

Query: 176 EPIASDNMLVRYHPPIDET-------------------PKPVLKPVTDSGNQMASDTSDG 216
                   +V Y PP+ ET                   P P +    D      +DT   
Sbjct: 276 ---GRGAHIVEYLPPVPETSGQVNPVEGAICSANSQPVPSPAVATPMDMQTSNVADTLGS 332

Query: 217 MKDVFMNIDFL--------KMLMDENQAPFIPLDLHNDGE 248
            ++ F +   L        ++L D+N  P +P    NDG+
Sbjct: 333 SEEPFADNSTLHEWDDNDMQLLFDDNLDPILP-PFENDGQ 371

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6VBB2|HFA2B_ORYSJ Heat stress transcription factor A-2b OS=Oryza sativa subsp. japonica GN=HSFA2B PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/143 (44%), Positives = 85/143 (59%), Gaps = 10/143 (6%)

Query: 14  LKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKL 73
           ++QL T+    GFRK+D DRWEFAN+ F+R Q+HLL NI RRK         S QQS   
Sbjct: 105 VRQLNTY----GFRKVDPDRWEFANENFLRGQRHLLKNIKRRKPPS---HTASNQQS--- 154

Query: 74  VEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQ 133
           + P  ++ H     E++ LK  K  L  E++KLRQ Q+     L  + DR+QG E+ QQQ
Sbjct: 155 LGPYLEVGHFGYDAEIDRLKRDKQLLMAEVVKLRQEQQNTKANLKAMEDRLQGTEQRQQQ 214

Query: 134 MLSFLVMAMQNPSFLVQLLQPKE 156
           M++FL   M+NP FL QL+   E
Sbjct: 215 MMAFLARVMKNPEFLKQLMSQNE 237

Transcriptional regulator that specifically binds DNA of heat shock promoter elements (HSE).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LUH8|HFA6B_ARATH Heat stress transcription factor A-6b OS=Arabidopsis thaliana GN=HSFA6b PE=2 SV=1

 Score =  110 bits (275), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 95/153 (62%), Gaps = 6/153 (3%)

Query: 14  LKQLLTFSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGS--EQRKSLQQSE 71
           ++QL T+    GFRK++ DRWEFAN+GF+R QKHLL NI RRK +  S   Q+    + +
Sbjct: 114 VRQLNTY----GFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQ 169

Query: 72  KLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQ 131
            L   C ++    L  E+++L+  K  L  EL++LRQ Q++    L L+ ++++  E  Q
Sbjct: 170 SLDNFCIEVGRYGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQ 229

Query: 132 QQMLSFLVMAMQNPSFLVQLLQPKENNWRMAEA 164
           +QM+SFL  AMQNP F+ QL++ KE    + EA
Sbjct: 230 KQMMSFLARAMQNPDFIQQLVEQKEKRKEIEEA 262

Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
224099573	393	predicted protein [Populus trichocarpa]	0.906	0.786	0.544	7e-92
224111416	392	predicted protein [Populus trichocarpa]	0.906	0.788	0.527	2e-89
255573188	409	Heat shock factor protein, putative [Ric	0.894	0.745	0.498	2e-82
302398867	414	HSF domain class transcription factor [M	0.897	0.739	0.527	3e-81
449449028	396	PREDICTED: heat stress transcription fac	0.903	0.777	0.490	3e-76
356513038	358	PREDICTED: heat stress transcription fac	0.824	0.784	0.496	4e-74
356524620	364	PREDICTED: heat stress transcription fac	0.821	0.769	0.491	6e-73
147845437	516	hypothetical protein VITISV_021958 [Viti	0.621	0.410	0.567	7e-69
359472583	424	PREDICTED: LOW QUALITY PROTEIN: heat str	0.900	0.724	0.452	1e-68
297838559	374	predicted protein [Arabidopsis lyrata su	0.844	0.770	0.485	8e-68

>gi|224099573|ref|XP_002311537.1| predicted protein [Populus trichocarpa] gi|222851357|gb|EEE88904.1| predicted protein [Populus trichocarpa]

 Score =  343 bits (880), Expect = 7e-92,   Method: Compositional matrix adjust.
 Identities = 179/329 (54%), Positives = 237/329 (72%), Gaps = 20/329 (6%)

Query: 25  GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
           GFRKIDTD WEFANDGF+R QKHLL NI RRKN+QG++ RK +QQ +  VE  E ++++ 
Sbjct: 71  GFRKIDTDHWEFANDGFIRGQKHLLKNISRRKNSQGTDNRKLVQQQDNSVEHHESVENAG 130

Query: 85  LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ- 143
           LWKEVENLK GK ALTQEL+KL Q+QETADNKLLLLRDR+QGMEK+QQQMLSFLVMAMQ 
Sbjct: 131 LWKEVENLKTGKIALTQELVKLSQHQETADNKLLLLRDRLQGMEKNQQQMLSFLVMAMQK 190

Query: 144 NPSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVT 203
           +P FL QLL  KENNWRMAE G+++E+V +  +P+AS+ M+V+Y PP+DET +P+  P  
Sbjct: 191 SPGFLAQLLHKKENNWRMAEPGSIVEQVADDADPLASEGMIVKYQPPVDETFEPMHAPPI 250

Query: 204 DSGNQMASD-TSDGMKDVFMNIDFLKMLMD-----ENQAPFIPLDLHNDGEWEKLLLANP 257
              N   S+ +SDGMKD F + +F ++LMD     EN APF+  +L +DG WE+LLLANP
Sbjct: 251 GPENPRESNPSSDGMKDFFFSSEFTELLMDENLGFENHAPFVLPELADDGAWEQLLLANP 310

Query: 258 ILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQNFDNE- 316
            + N       KD E D E  TD + +   AV G++L+R  + E L+++++K  N +N+ 
Sbjct: 311 FVANI------KDSETDYEEPTDAETDTGTAVPGTQLDRSQDFENLIEQMEKYHNLENQA 364

Query: 317 ------LENARHLEFLTQKIELLASESNY 339
                  E  R+LE LT+++ LLASE+N+
Sbjct: 365 TDEGPHFEKPRNLEILTKQMGLLASETNH 393

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111416|ref|XP_002315847.1| predicted protein [Populus trichocarpa] gi|118487196|gb|ABK95426.1| unknown [Populus trichocarpa] gi|222864887|gb|EEF02018.1| predicted protein [Populus trichocarpa]

 Score =  335 bits (859), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 173/328 (52%), Positives = 237/328 (72%), Gaps = 19/328 (5%)

Query: 25  GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
           GFRKIDTD+WEFANDGF+R QKHLL NICRRKN+QG++ RKS+QQ +  +E CE +++  
Sbjct: 71  GFRKIDTDQWEFANDGFIRGQKHLLKNICRRKNSQGTDNRKSVQQQDNSIEHCENVENVG 130

Query: 85  LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144
           LWKEVE+LK G+NA+TQEL+KLRQ+QETADNKLLLLRDR+QGMEK+QQQMLSFLVMAMQ+
Sbjct: 131 LWKEVESLKTGRNAVTQELVKLRQHQETADNKLLLLRDRLQGMEKNQQQMLSFLVMAMQS 190

Query: 145 PSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTD 204
           P FL QLL  KENNWR+AE G+++E+  +  E +AS+ M+VRY PP+DE  +PV  P   
Sbjct: 191 PGFLAQLLNKKENNWRIAEPGSIVEQGADDAEQLASEGMIVRYQPPVDEMFEPVHAPPIG 250

Query: 205 SGNQMASD-TSDGMKDVFMNIDFLKMLMD-----ENQAPFIPLDLHNDGEWEKLLLANPI 258
             N   S+ +SDGMKD F++ DF+++LMD     EN   F   +L +DG WE+LLLANP 
Sbjct: 251 PENPRESNPSSDGMKDFFVSPDFMELLMDENLGFENHTSFGLPELADDGSWEQLLLANPF 310

Query: 259 LDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQNFDNE-- 316
           ++N +DT+   ++  D E       +    + G++LER  + E L++ ++KS + +N+  
Sbjct: 311 IENIKDTKPGSEESTDTE------TDTGTTIVGTQLERSQSFEYLIEMMEKSNDLENKAT 364

Query: 317 -----LENARHLEFLTQKIELLASESNY 339
                 E ++ LE LT+++ LLASE N+
Sbjct: 365 DEGPHFEKSQKLEILTEQMGLLASEPNH 392

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255573188|ref|XP_002527523.1| Heat shock factor protein, putative [Ricinus communis] gi|223533073|gb|EEF34832.1| Heat shock factor protein, putative [Ricinus communis]

 Score =  312 bits (799), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 171/343 (49%), Positives = 228/343 (66%), Gaps = 38/343 (11%)

Query: 25  GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
           GFRK DTDRWEFANDGF+R +KHLL NICRRKN+QG++ RKSLQQ +  VE C+KI +  
Sbjct: 75  GFRKTDTDRWEFANDGFIRGKKHLLKNICRRKNSQGADNRKSLQQQDNAVESCDKIGNEG 134

Query: 85  LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144
           LWKE+ENLK  KNAL QEL+KLRQ+QE  DNKL+LLRDR QGMEK+QQQMLSFLVM MQ+
Sbjct: 135 LWKEIENLKTSKNALMQELIKLRQHQENTDNKLVLLRDRFQGMEKNQQQMLSFLVMVMQS 194

Query: 145 PSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPV----LK 200
           P FL QLL PKENNWRMAE G+++E+  +  E  AS  M+V+Y PPIDE   P+      
Sbjct: 195 PGFLAQLLHPKENNWRMAEPGSIVEQGAD-EEQWASGRMIVKYQPPIDEMLTPMEVNYQP 253

Query: 201 PVTDSGNQMASDT-------SDGMKDVFMNIDFLKMLMDEN------QAPFIPLDLHNDG 247
           P+ +    M S+         DG+KD F++ DF+K+LMDEN       APFI  +  +DG
Sbjct: 254 PIEEMPASMVSENPQESNPFPDGIKDSFLSPDFMKLLMDENLSSFETLAPFILPEFPDDG 313

Query: 248 EWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLN---NLELLL 304
            WE+LLLA+    N E+++ D D E           E   A SG+++++L+   N   L+
Sbjct: 314 AWEQLLLASSFSQNVEESKRDADAE----------NEIGIAASGNQVDQLDESENFGFLV 363

Query: 305 QELDKSQ-------NFDNELENARHLEFLTQKIELLASESNYK 340
           ++++K Q       +++N    +++LE +T+K+ LL SE N K
Sbjct: 364 EDIEKYQSLESKSMDYENHSGKSQNLEIVTKKMALLTSEINQK 406

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398867|gb|ADL36728.1| HSF domain class transcription factor [Malus x domestica]

 Score =  308 bits (789), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 173/328 (52%), Positives = 229/328 (69%), Gaps = 22/328 (6%)

Query: 25  GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
           GFRKID DRW FAN+GF+R QKHLL NI RRK+ QG++Q+K LQQ +    P E I  + 
Sbjct: 81  GFRKIDPDRWVFANEGFIRGQKHLLKNIARRKHPQGTDQKKILQQKDNPDIPSENISENG 140

Query: 85  LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144
           LWKEVENLK  K AL QEL+KLRQ+QE + NKLLLLR+R++GMEK+QQQMLSFLVMAMQ+
Sbjct: 141 LWKEVENLKTDKVALKQELVKLRQHQEISQNKLLLLRNRLRGMEKNQQQMLSFLVMAMQS 200

Query: 145 PSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTD 204
           P FLVQLL PKEN+WR+AEAG ++E+  +   P+ASD  +VRY PP+ E PKP++ P + 
Sbjct: 201 PGFLVQLLHPKENSWRIAEAGNIIEQCMDDDRPVASDGAIVRYQPPMIEAPKPLVPPNSG 260

Query: 205 SGNQMASDTS-DGMKDVFMNIDFLKMLMD------ENQAPFIPLDLHNDGEWEKLLLANP 257
           S  Q   D   DGM+D  +N DF+KMLMD      E  AP+   D+ +DG WE+ LLA+P
Sbjct: 261 SEKQPEVDAYMDGMEDFVVNPDFMKMLMDEKLSPVETHAPYTLPDISDDGAWEQFLLASP 320

Query: 258 ILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQNFDNE- 316
            L+N E T     KE D E   D  ME EP V  S+L+   N + L++++ KSQNF ++ 
Sbjct: 321 FLENIEGT-----KE-DGEEPADARMEVEPIV--SDLDESQNFDYLVEQMKKSQNFASDS 372

Query: 317 ------LENARHLEFLTQKIELLASESN 338
                 +E++++LEF+T+++  LAS+SN
Sbjct: 373 TVDGSNMESSQNLEFITEQMGHLASDSN 400

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449028|ref|XP_004142267.1| PREDICTED: heat stress transcription factor A-8-like [Cucumis sativus] gi|449510587|ref|XP_004163707.1| PREDICTED: heat stress transcription factor A-8-like [Cucumis sativus]

 Score =  291 bits (745), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 160/326 (49%), Positives = 224/326 (68%), Gaps = 18/326 (5%)

Query: 25  GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
           GFRKIDTD WEFA DGF++ QKHLL NI RRKN  G++QRK+ Q  +      E  D+S 
Sbjct: 75  GFRKIDTDCWEFATDGFIKGQKHLLKNIYRRKNIHGTDQRKASQPQDNSEAQVELPDYSG 134

Query: 85  LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144
           LWKEVENLK  KNA+ QEL+KL+Q+QET++NKLLLLR+R+QGMEK+QQQMLSFLVMA+Q+
Sbjct: 135 LWKEVENLKIDKNAVMQELVKLKQHQETSENKLLLLRERLQGMEKNQQQMLSFLVMAVQS 194

Query: 145 PSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTD 204
           P FLVQ LQPKE +WRMA+ G MLE++++  + + S+ M+VRY  P+DE    +L PVT 
Sbjct: 195 PGFLVQFLQPKEKSWRMADPGNMLEQISDDNQ-VPSNGMIVRYQRPLDELSTTLLPPVTG 253

Query: 205 SGNQMASDT-SDGMKDVFMNIDFLKMLMDE-----NQAPFIPLDLHNDGEWEKLLLANPI 258
            G Q  S+   DGMKD F+N DF+K+LMDE     N + F+  D+  D  WE+LLLANP 
Sbjct: 254 PGKQQESEPFPDGMKDFFLNSDFMKVLMDEKVCLDNHSQFVLPDVQ-DVAWEQLLLANPF 312

Query: 259 LDNSEDT-QVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQNF---- 313
             NS++  +VD ++        ++DME     + +  E   + ELL+++++K ++F    
Sbjct: 313 SGNSDNGRKVDHERRYTDSEDDELDMET--IDTQTHEENSEDFELLIRQMEKCEDFGIQP 370

Query: 314 ---DNELENARHLEFLTQKIELLASE 336
              ++ +EN+  +  LTQ+++ LAS+
Sbjct: 371 RLDESYIENSNDVHLLTQQMDYLASD 396

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356513038|ref|XP_003525221.1| PREDICTED: heat stress transcription factor A-8 [Glycine max]

 Score =  284 bits (726), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 146/294 (49%), Positives = 206/294 (70%), Gaps = 13/294 (4%)

Query: 25  GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
           GFRKIDTD WEFAN+ FVR QKHLL NI RRK+   ++Q+K+L Q +   EP ++  +  
Sbjct: 70  GFRKIDTDSWEFANENFVRGQKHLLKNIHRRKHPHSADQQKALPQQDNCDEPSQEAPNHG 129

Query: 85  LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144
           LWKEVENLK  KN+LTQEL+KLRQ+QE+A++KLLLL DR+QGMEK QQQMLSFLVM +Q+
Sbjct: 130 LWKEVENLKLDKNSLTQELVKLRQHQESAESKLLLLSDRLQGMEKHQQQMLSFLVMVVQS 189

Query: 145 PSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTD 204
           P F+VQLL PKENNWR+AE+   L++  +  +P+ASD M+++Y PP+ E  KPV+     
Sbjct: 190 PGFMVQLLHPKENNWRLAESWNRLDQDKQDDKPVASDGMIIKYKPPVGEKLKPVVPLSPG 249

Query: 205 SGNQMASD-TSDGMKDVFMNIDFLKMLMD------ENQAPFIPLDLHNDGEWEKLLLANP 257
             NQ   + ++DG+KD+ ++ +FLK+L+D      EN +PF+  DL +DG WE+L L +P
Sbjct: 250 FENQPEPELSADGLKDLCISSEFLKVLLDEKLSPLENHSPFLLPDLPDDGSWEQLFLGSP 309

Query: 258 ILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQ 311
            L N +D++       + EGHT+  ME EP +S +  E     E ++ E++K++
Sbjct: 310 FLGNIQDSK------NESEGHTNSGMEMEPTISETPNENSRTFESMIIEMEKTR 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524620|ref|XP_003530926.1| PREDICTED: heat stress transcription factor A-8-like [Glycine max]

 Score =  280 bits (716), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 145/295 (49%), Positives = 208/295 (70%), Gaps = 15/295 (5%)

Query: 25  GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
           GFRKIDTD WEFAN+ FVR QKHLL NI RRK+   ++Q+K+L Q +   EP ++  +  
Sbjct: 76  GFRKIDTDCWEFANENFVRGQKHLLKNIRRRKHPHSADQQKALPQQDNCDEPSQEAPYHG 135

Query: 85  LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144
           LWKEVENLK  KN+LTQEL+KLRQ+QE+A+NKLLLL DR+QGMEK QQQMLSFLVM +Q+
Sbjct: 136 LWKEVENLKLDKNSLTQELVKLRQHQESAENKLLLLSDRLQGMEKHQQQMLSFLVMVVQS 195

Query: 145 PSFLVQLLQPKENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVTD 204
           P F+VQLL PKENNW +AE+  +L++  +  +P+ASD M+++Y PP+ E  KPV+ P++ 
Sbjct: 196 PGFMVQLLHPKENNWHLAESWNILDQDKQDDKPVASDGMIIKYKPPVGEKLKPVV-PLSP 254

Query: 205 SGNQMASD--TSDGMKDVFMNIDFLKMLMD------ENQAPFIPLDLHNDGEWEKLLLAN 256
              +      +++G+KD+ ++ +FLK+L+D      EN +PF+  DL +DG WE+L L +
Sbjct: 255 GFEKQTEPELSAEGLKDLCVSSEFLKVLLDEKLSPLENHSPFLLPDLPDDGSWEQLFLGS 314

Query: 257 PILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQ 311
           P + N +D+    +KE   EGHT+  ME EP +S +  E     E ++ E++K++
Sbjct: 315 PFMGNIQDS----NKE--SEGHTNGGMEMEPTISETPNENSRTFESMIVEMEKTR 363

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147845437|emb|CAN83349.1| hypothetical protein VITISV_021958 [Vitis vinifera]

 Score =  267 bits (682), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 138/243 (56%), Positives = 168/243 (69%), Gaps = 31/243 (12%)

Query: 20  FSFSQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEK 79
           F+   GFRKIDTD WEFAN+GF+R QKHLL NI RRK  QG +++KS  Q +K    CE+
Sbjct: 90  FASFLGFRKIDTDHWEFANEGFIRGQKHLLKNIRRRKQLQGQDKQKSSHQRDKSAGACEE 149

Query: 80  IDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLV 139
           I+ S LW +VE LK  +NALTQ+L+KLRQ+QETA++KLL+LR+R+QGMEK+QQQMLSFLV
Sbjct: 150 IEASKLWNDVEILKTDRNALTQQLVKLRQHQETAESKLLVLRERLQGMEKNQQQMLSFLV 209

Query: 140 MAMQNPSFLVQLLQPKENNWRMAEAG-TMLEEVTEVGEPIASDNMLVRYHPPIDETPKPV 198
           MAMQ+P FLVQ +QPKE NWRMAE G  MLE   E GEP ASD M+VRY PP+DETPKP+
Sbjct: 210 MAMQSPEFLVQFMQPKEKNWRMAEVGKNMLERRAENGEPAASDVMIVRYQPPMDETPKPL 269

Query: 199 LKPVTDSGNQMASDTSDGM---------------------------KDVFMNIDFLKMLM 231
             P ++S   +    SDGM                            D FMNIDF+K+LM
Sbjct: 270 PIPTSNSEKSL---ESDGMIVRYQPPMXETAKPLLMAKSNSEKSLESDFFMNIDFMKILM 326

Query: 232 DEN 234
           DEN
Sbjct: 327 DEN 329

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472583|ref|XP_003631170.1| PREDICTED: LOW QUALITY PROTEIN: heat stress transcription factor A-8-like [Vitis vinifera]

 Score =  266 bits (680), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 161/356 (45%), Positives = 212/356 (59%), Gaps = 49/356 (13%)

Query: 25  GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
           GFRKIDTD WEFAN+GF+R QKHLL NI RRK  QG +++KS  Q +K    CE+I+ S 
Sbjct: 73  GFRKIDTDHWEFANEGFIRGQKHLLKNIRRRKQLQGQDKQKSSHQRDKSAGACEEIEASK 132

Query: 85  LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144
           LW +VE LK  +NALTQ+L+KLRQ+QETA++KLL+LR+R+QGMEK+QQQMLSFLVMAMQ+
Sbjct: 133 LWNDVEILKTDRNALTQQLVKLRQHQETAESKLLVLRERLQGMEKNQQQMLSFLVMAMQS 192

Query: 145 PSFLVQLLQPKENNWRMAEAG-TMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPVT 203
           P FLVQ +QPKE NWRMAE G  MLE   E GEP ASD M+VRY PP+DETPKP+  P +
Sbjct: 193 PEFLVQFMQPKEKNWRMAEVGKNMLERRAENGEPAASDVMIVRYQPPMDETPKPLPIPTS 252

Query: 204 DSGNQMASDTSDGM---------------------------KDVFMNIDFLKMLMDENQA 236
           +S   +    SDGM                            D FMNIDF+K+LMD N  
Sbjct: 253 NSEKSLE---SDGMIVRYQPPMDETAKPLLMAKSNSEKSLESDFFMNIDFMKILMDGNMG 309

Query: 237 PFIPLDLHNDGEWEKLLLANPILDNSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELER 296
                  H +      L  + ILD          K  +++   D  M  +P V+ ++L+ 
Sbjct: 310 S----SEHQEPLILPDLPDDDILDQLLLENFADAKLDNQQAPIDSGMVMDPTVNQTQLDE 365

Query: 297 LNNLELL-------LQELDKSQNFDNE-------LENARHLEFLTQKIELLASESN 338
             + ELL       L+ ++K    + E        E ++H E LT+++   AS++N
Sbjct: 366 PQHFELLNLEQKMPLKRMEKPYELEVESTLHGTRFEKSQHSELLTEQMGQXASDTN 421

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297838559|ref|XP_002887161.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297333002|gb|EFH63420.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  263 bits (672), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 154/317 (48%), Positives = 200/317 (63%), Gaps = 29/317 (9%)

Query: 25  GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPC--EKIDH 82
           GFRK+D DRWEFANDGFV+ QK LL N+ RRKN Q SEQ K   Q  +    C  EK + 
Sbjct: 79  GFRKVDADRWEFANDGFVKGQKDLLKNVIRRKNVQSSEQSK---QENRSTSTCAQEKTEK 135

Query: 83  SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM 142
           S LWKEV+ LK  K  L QEL+K+RQYQET D K+L L DRVQGME+SQQ+MLSFLVM M
Sbjct: 136 SGLWKEVDILKGDKQVLAQELIKVRQYQETTDTKMLHLEDRVQGMEESQQEMLSFLVMVM 195

Query: 143 QNPSFLVQLLQPKE-NNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKP 201
           +NPS LVQLLQPKE N+WR AE  T++EEVT+ GE  +    LV+Y PP D         
Sbjct: 196 KNPSLLVQLLQPKEKNSWRKAEGATIVEEVTDEGESNSYGLPLVKYQPPSD--------- 246

Query: 202 VTDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPILDN 261
                N  A   ++ + D   N D LK  +DEN  P I  DL++DG WEKLLL +P    
Sbjct: 247 -----NGTAKSNTNDVNDFLRNADMLKFCLDENHVPLIIPDLYDDGAWEKLLLLSP---- 297

Query: 262 SEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERLNNLELLLQELDKSQNFD-NEL--E 318
               +  K + + K+G  D  +E E      EL++ + L+L+ +E++K  +F+  +L  E
Sbjct: 298 -SRKKTKKQENIVKKGKDDSTLEEEED-GTMELDKSHMLKLISEEMEKPDDFEFGQLTPE 355

Query: 319 NARHLEFLTQKIELLAS 335
            +R+LE LT+++ELLAS
Sbjct: 356 RSRNLEILTEQMELLAS 372

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
TAIR|locus:2200171	374	HSFA8 "AT1G67970" [Arabidopsis	0.844	0.770	0.471	5.5e-61
TAIR|locus:2149050	481	HSF3 "AT5G16820" [Arabidopsis	0.580	0.411	0.364	7.1e-34
TAIR|locus:2028326	485	HSFA1D "AT1G32330" [Arabidopsi	0.516	0.362	0.414	2.9e-32
TAIR|locus:2005495	495	HSF1 "AT4G17750" [Arabidopsis	0.483	0.333	0.448	6e-32
TAIR|locus:2094339	406	HSFA6B "AT3G22830" [Arabidopsi	0.410	0.344	0.443	3.5e-27
TAIR|locus:2075447	468	HSFA1E "AT3G02990" [Arabidopsi	0.574	0.418	0.349	1.8e-25
TAIR|locus:2077249	282	AT-HSFA7B "AT3G63350" [Arabido	0.419	0.507	0.358	4.1e-21
TAIR|locus:2057371	345	HSFA2 "AT2G26150" [Arabidopsis	0.372	0.368	0.421	4.9e-21
TAIR|locus:2166562	331	HSFA9 "AT5G54070" [Arabidopsis	0.527	0.543	0.297	3.4e-17
TAIR|locus:2117139	401	HSF A4A "AT4G18880" [Arabidops	0.360	0.306	0.354	1.9e-16

TAIR|locus:2200171 HSFA8 "AT1G67970" [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 149/316 (47%), Positives = 186/316 (58%)

Query:    25 GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
             GFRK+D DRWEFANDGFVR QK LL N+ RRKN Q SEQ K    S    +  EK   S 
Sbjct:    80 GFRKVDADRWEFANDGFVRGQKDLLKNVIRRKNVQSSEQSKHESTSTTYAQ--EK---SG 134

Query:    85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144
             LWKEV+ LK  K  L QEL+K+RQYQE  D K+L L DRVQGME+SQQ+MLSFLVM M+N
Sbjct:   135 LWKEVDILKGDKQVLAQELIKVRQYQEVTDTKMLHLEDRVQGMEESQQEMLSFLVMVMKN 194

Query:   145 PSFLVQLLQPKENN-WRMA-EAGTMLEEVTEVGEPIASDNMLVRYHPPIDETPKPVLKPV 202
             PS LVQLLQPKE N WR A E   ++EEVT+ GE  +    LV Y PP D          
Sbjct:   195 PSLLVQLLQPKEKNTWRKAGEGAKIVEEVTDEGESNSYGLPLVTYQPPSDN--------- 245

Query:   203 TDSGNQMASDTSDGMKDVFMNIDFLKMLMDENQAPFIPLDLHNDGEWEKLLLANPILDNS 262
                 N  A   S+ + D   N D LK  +DEN  P I  DL++DG WEKLLL +P   + 
Sbjct:   246 ----NGTAKSNSNDVNDFLRNADMLKFCLDENHVPLIIPDLYDDGAWEKLLLLSP---SR 298

Query:   263 EDTQVDKDKEVDKEGHTDVDMEAEPAVSGSXXXXXXXXXXXXXXXDKSQNFD-NEL--EN 319
             + T+  K + + K+G  D+ +E E                     +K  +F+  +L  E 
Sbjct:   299 KKTK--KQENIVKKGKDDLTLEEEEEDGTMELDKSYMLKLISEEMEKPDDFEFGQLTPER 356

Query:   320 ARHLEFLTQKIELLAS 335
             +R+LE LT+++ELLAS
Sbjct:   357 SRNLEILTEQMELLAS 372

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2149050 HSF3 "AT5G16820" [Arabidopsis thaliana (taxid:3702)]

 Score = 338 (124.0 bits), Expect = 7.1e-34, Sum P(2) = 7.1e-34
 Identities = 75/206 (36%), Positives = 118/206 (57%)

Query:    25 GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
             GFRK+D DRWEFAN+GF+R +K LL +I RRK +   + ++  Q     V  C ++    
Sbjct:    87 GFRKVDPDRWEFANEGFLRGRKQLLKSIVRRKPSHVQQNQQQTQVQSSSVGACVEVGKFG 146

Query:    85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144
             + +EVE LK  KN L QEL++LRQ Q+  +N+L  +  +VQ ME+ QQQM+SFL  A+Q+
Sbjct:   147 IEEEVERLKRDKNVLMQELVRLRQQQQATENQLQNVGQKVQVMEQRQQQMMSFLAKAVQS 206

Query:   145 PSFLVQLLQPKENNWRMAEAGTM------LEEVTEVGEPIAS--DNMLVRYHPPIDETPK 196
             P FL QL+Q   N+      G+       ++E    G+ +A+  +  +VRY P I+E  +
Sbjct:   207 PGFLNQLVQQNNNDGNRQIPGSNKKRRLPVDEQENRGDNVANGLNRQIVRYQPSINEAAQ 266

Query:   197 PVLKPVTDSGNQMASDTSDGMKDVFM 222
              +L+   ++      ++     D F+
Sbjct:   267 NMLRQFLNTSTSPRYESVSNNPDSFL 292

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;IMP;RCA

TAIR|locus:2028326 HSFA1D "AT1G32330" [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 78/188 (41%), Positives = 108/188 (57%)

Query:    25 GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQ----SEKLVEPCEKI 80
             GFRK+D DRWEFAN+GF+R QKHLL +I RRK   G  Q     Q        V  C ++
Sbjct:    97 GFRKVDPDRWEFANEGFLRGQKHLLQSITRRKPAHGQGQGHQRSQHSNGQNSSVSACVEV 156

Query:    81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM 140
                 L +EVE LK  KN L QEL++LRQ Q++ DN+L  +  R+QGME  QQQ++SFL  
Sbjct:   157 GKFGLEEEVERLKRDKNVLMQELVRLRQQQQSTDNQLQTMVQRLQGMENRQQQLMSFLAK 216

Query:   141 AMQNPSFLVQLLQPK----ENNWRMAEAGTML----EEVTEVGEPIASDNMLVRYHPPID 192
             A+Q+P FL Q LQ +    E+N R+++         + +    +    D  +V+Y PP+ 
Sbjct:   217 AVQSPHFLSQFLQQQNQQNESNRRISDTSKKRRFKRDGIVRNNDSATPDGQIVKYQPPMH 276

Query:   193 ETPKPVLK 200
             E  K + K
Sbjct:   277 EQAKAMFK 284

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2005495 HSF1 "AT4G17750" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 83/185 (44%), Positives = 111/185 (60%)

Query:    25 GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKL---------VE 75
             GFRK+D DRWEFAN+GF+R QKHLL  I RRK+ QG     S  QS++L         + 
Sbjct:   112 GFRKVDPDRWEFANEGFLRGQKHLLKKISRRKSVQGHGSSSSNPQSQQLSQGQGSMAALS 171

Query:    76 PCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML 135
              C ++    L +EVE LK  KN L QEL+KLRQ Q+T DNKL +L   +Q ME+ QQQ++
Sbjct:   172 SCVEVGKFGLEEEVEQLKRDKNVLMQELVKLRQQQQTTDNKLQVLVKHLQVMEQRQQQIM 231

Query:   136 SFLVMAMQNPSFLVQLLQPK-ENNWRMAEAGT---MLEEVTEVGEPI-------ASDNML 184
             SFL  A+QNP+FL Q +Q + ++N  + EA     + E+ T   E         ASD  +
Sbjct:   232 SFLAKAVQNPTFLSQFIQKQTDSNMHVTEANKKRRLREDSTAATESNSHSHSLEASDGQI 291

Query:   185 VRYHP 189
             V+Y P
Sbjct:   292 VKYQP 296

GO:0003677 "DNA binding" evidence=ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009408 "response to heat" evidence=IEP;RCA

TAIR|locus:2094339 HSFA6B "AT3G22830" [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 63/142 (44%), Positives = 91/142 (64%)

Query:    25 GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEK--LVEPCEKIDH 82
             GFRK++ DRWEFAN+GF+R QKHLL NI RRK +  S Q +  Q SE+  L   C ++  
Sbjct:   121 GFRKVNPDRWEFANEGFLRGQKHLLKNIRRRKTSNNSNQMQQPQSSEQQSLDNFCIEVGR 180

Query:    83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM 142
               L  E+++L+  K  L  EL++LRQ Q++    L L+ ++++  E  Q+QM+SFL  AM
Sbjct:   181 YGLDGEMDSLRRDKQVLMMELVRLRQQQQSTKMYLTLIEEKLKKTESKQKQMMSFLARAM 240

Query:   143 QNPSFLVQLLQPKENNWRMAEA 164
             QNP F+ QL++ KE    + EA
Sbjct:   241 QNPDFIQQLVEQKEKRKEIEEA 262

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2075447 HSFA1E "AT3G02990" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 72/206 (34%), Positives = 111/206 (53%)

Query:    25 GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSE-QRKSLQQSEKLVEPCEKIDHS 83
             GFRK+D DRWEFAN+GF+R QK +L +I RRK  Q    Q+  +Q S   V  C ++   
Sbjct:    83 GFRKVDPDRWEFANEGFLRGQKQILKSIVRRKPAQVQPPQQPQVQHSS--VGACVEVGKF 140

Query:    84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ 143
              L +EVE L+  KN L QEL++LRQ Q+  ++ L  +  +V  ME+ QQQM+SFL  A+Q
Sbjct:   141 GLEEEVERLQRDKNVLMQELVRLRQQQQVTEHHLQNVGQKVHVMEQRQQQMMSFLAKAVQ 200

Query:   144 NPSFLVQLLQPK-ENNWRMAEAGTM----LEEVTEVGEPIAS--DNMLVRYHPPIDETPK 196
             +P FL Q  Q   E N  ++E+       +E+    G    +     +VRY   +++   
Sbjct:   201 SPGFLNQFSQQSNEANQHISESNKKRRLPVEDQMNSGSHGVNGLSRQIVRYQSSMNDATN 260

Query:   197 PVLKPVTDSGNQMASDTSDGMKDVFM 222
              +L+ +    N  + ++       F+
Sbjct:   261 TMLQQIQQMSNAPSHESLSSNNGSFL 286

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

TAIR|locus:2077249 AT-HSFA7B "AT3G63350" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 4.1e-21, Sum P(2) = 4.1e-21
 Identities = 56/156 (35%), Positives = 86/156 (55%)

Query:    25 GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
             GFRKI+ +RWEF N+GF+  Q+ LL +I RR +   S    SL  S+   +P E  D   
Sbjct:    88 GFRKIEAERWEFMNEGFLMGQRDLLKSIKRRTS---SSSPPSLNYSQS--QP-EAHDPGV 141

Query:    85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144
                E+  L+  ++ L  E+  LRQ ++ A   +  +  R+ G EK Q+ M+SFL  A++N
Sbjct:   142 ---ELPQLREERHVLMMEISTLRQEEQRARGYVQAMEQRINGAEKKQRHMMSFLRRAVEN 198

Query:   145 PSFLVQLLQPKENNWRMA---EAGTM-LEEVTEVGE 176
             PS L Q+ + K +    A   +AG + +EEV  + E
Sbjct:   199 PSLLQQIFEQKRDREEAAMIDQAGLIKMEEVEHLSE 234

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0006457 "protein folding" evidence=RCA

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

TAIR|locus:2057371 HSFA2 "AT2G26150" [Arabidopsis thaliana (taxid:3702)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 56/133 (42%), Positives = 79/133 (59%)

Query:    25 GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
             GFRKID DRWEFAN+GF+  QKHLL NI RR+N  G +     QQ   +   C ++    
Sbjct:   104 GFRKIDPDRWEFANEGFLAGQKHLLKNIKRRRN-MGLQNVN--QQGSGM--SCVEVGQYG 158

Query:    85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144
                EVE LK     L  E+++LRQ Q ++ +++  +  R+   EK QQQM++FL  A+ N
Sbjct:   159 FDGEVERLKRDHGVLVAEVVRLRQQQHSSKSQVAAMEQRLLVTEKRQQQMMTFLAKALNN 218

Query:   145 PSFLVQL-LQPKE 156
             P+F+ Q  +  KE
Sbjct:   219 PNFVQQFAVMSKE 231

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=IEP;RCA

GO:0009644 "response to high light intensity" evidence=IEP;RCA

GO:0042542 "response to hydrogen peroxide" evidence=IEP;RCA

GO:0010200 "response to chitin" evidence=IEP

GO:0034620 "cellular response to unfolded protein" evidence=IEP;IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0001666 "response to hypoxia" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0010286 "heat acclimation" evidence=RCA;IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

TAIR|locus:2166562 HSFA9 "AT5G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.4e-17, P = 3.4e-17
 Identities = 60/202 (29%), Positives = 106/202 (52%)

Query:    23 SQGFRKIDTDRWEFANDGFVRDQKHLLNNICRR-KNTQGSEQRKSLQQSEKLVEPCEKID 81
             S GF+K+D+DRWEFAN+GF   +KHLL NI RR KNT+   +  S   +E          
Sbjct:   129 SYGFKKVDSDRWEFANEGFQGGKKHLLKNIKRRSKNTKCCNKEASTTTTET--------- 179

Query:    82 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMA 141
                   EVE+LK  ++ +  E+LKL+Q QE + ++++ +++++ G++  QQ MLSF    
Sbjct:   180 ------EVESLKEEQSPMRLEMLKLKQQQEESQHQMVTVQEKIHGVDTEQQHMLSFFAKL 233

Query:   142 MQNPSFLVQLLQPKENN-WRMAEAGTMLEEVTEVGEPIASDNML-VRYH----PPIDETP 195
              ++  F+ +L++ ++    R  EA   ++++  + +     N+L V          +  P
Sbjct:   234 AKDQRFVERLVKKRKMKIQRELEAAEFVKKLKLLQDQETQKNLLDVEREFMAMAATEHNP 293

Query:   196 KPVLKPVTDSGNQMASDTSDGM 217
             +P +     SGN      S+ +
Sbjct:   294 EPDILVNNQSGNTRCQLNSEDL 315

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009408 "response to heat" evidence=RCA

TAIR|locus:2117139 HSF A4A "AT4G18880" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
 Identities = 45/127 (35%), Positives = 69/127 (54%)

Query:    25 GFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSA 84
             GFRK D ++WEFAND FVR Q HL+ NI RRK         SL   +  + P    +   
Sbjct:    75 GFRKADPEQWEFANDDFVRGQPHLMKNIHRRKPVHSH----SLPNLQAQLNPLTDSERVR 130

Query:    85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQN 144
             +  ++E L   K  L +EL K  + +E  + ++  L++R+Q MEK Q+ M+SF+   ++ 
Sbjct:   131 MNNQIERLTKEKEGLLEELHKQDEEREVFEMQVKELKERLQHMEKRQKTMVSFVSQVLEK 190

Query:   145 PSFLVQL 151
             P   + L
Sbjct:   191 PGLALNL 197

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	341
pfam00447	96	pfam00447, HSF_DNA-bind, HSF-type DNA-binding	3e-08
smart00415	105	smart00415, HSF, heat shock factor	4e-08

>gnl|CDD|215924 pfam00447, HSF_DNA-bind, HSF-type DNA-binding

 Score = 50.2 bits (121), Expect = 3e-08
 Identities = 19/36 (52%), Positives = 23/36 (63%), Gaps = 2/36 (5%)

Query: 25 GFRKIDTDR--WEFANDGFVRDQKHLLNNICRRKNT 58
          GF K+  DR  WEFA+  F R QK LL+ I RRK+ 
Sbjct: 61 GFHKVKDDRNGWEFAHPNFKRGQKELLSKIKRRKSE 96

Length = 96

>gnl|CDD|214654 smart00415, HSF, heat shock factor

 Score = 50.4 bits (121), Expect = 4e-08
 Identities = 20/42 (47%), Positives = 24/42 (57%), Gaps = 11/42 (26%)

Query: 25  GFRKID-----------TDRWEFANDGFVRDQKHLLNNICRR 55
           GFRK+D           +D+WEFAN  FVR Q  LL NI R+
Sbjct: 64  GFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK 105

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
KOG0627	304	consensus Heat shock transcription factor [Transcr	100.0
COG5169	282	HSF1 Heat shock transcription factor [Transcriptio	99.74
PF00447	103	HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR0	99.74
smart00415	105	HSF heat shock factor.	99.74
PF03310	121	Cauli_DNA-bind: Caulimovirus DNA-binding protein;	92.33
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	90.54
PF12325	120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	90.17
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.9
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	89.73
PF04340	225	DUF484: Protein of unknown function, DUF484; Inter	89.28
PF11932	251	DUF3450: Protein of unknown function (DUF3450); In	85.36
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	85.12
PF12329	74	TMF_DNA_bd: TATA element modulatory factor 1 DNA b	83.63
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	83.09
TIGR02449	65	conserved hypothetical protein TIGR02449. Members	82.45
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	80.83

>KOG0627 consensus Heat shock transcription factor [Transcription]

Probab=100.00  E-value=4.5e-35  Score=277.94  Aligned_cols=176  Identities=32%  Similarity=0.406  Sum_probs=140.1

Q ss_pred             CcccccCCc---chHHhhhcCCCCCCccccC--CCCceeecCCccccchhhHHhhhhcCCCCCcchh--hh-cccccccc
Q 019406            3 LKLNYLKYQ---LSLKQLLTFSFSQGFRKID--TDRWEFANDGFVRDQKHLLNNICRRKNTQGSEQR--KS-LQQSEKLV   74 (341)
Q Consensus         3 lLPkYFKHs---SFvRQLNm~l~~YGFRKVd--pDrWEFANe~F~RGq~hLLknIkRRK~~~s~~~q--~s-~qqq~~~~   74 (341)
                      |||+||||+   ||||||||    ||||||+  +|+|||+|++|+||++|||++|+|||+.+.....  .. ........
T Consensus        53 ~Lp~~FKh~NfsSFvRQLN~----YgFrKv~~~~~~wEF~n~~F~rg~~~LL~~I~rrk~~~~~~~~~~~~~~~~~~~~~  128 (304)
T KOG0627|consen   53 LLPLYFKHNNFSSFVRQLNM----YGFRKVDFKSDRWEFSNPCFVRGQKLLLKNIKRRKSASRIFQTKDSPKSFERQLNL  128 (304)
T ss_pred             HhHHhccccCccceeeeecc----cceeecCCCCCceeecChhHhcChHHHHHHHhhhccccCCcccccCcchhhhhhhH
Confidence            799999998   99999999    9999999  9999999999999999999999999998765321  11 00000001


Q ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhcCc
Q 019406           75 EPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQP  154 (341)
Q Consensus        75 ~~~~e~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qnP~fl~qLvqq  154 (341)
                      ..+.......+..++.+|++++++|+.|+++||+++..+..+++.+.+++..++++|++|+.|+++++++|+|+.++.+.
T Consensus       129 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~  208 (304)
T KOG0627|consen  129 YGFVKIRQLNLKESAKSLSKENEVLQRELVELRQQQDALRATIQTSKRVVKSKETRNSLILSFLARDVQSPGFLNQAPQR  208 (304)
T ss_pred             HHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccCchhhHHHHHhhHHHhhccCccchhcccch
Confidence            12233345678899999999999999999999999999999999999999999999999999999999999999999876


Q ss_pred             ccccchhhhccchhhhhcccCCCCCCCCCeeeeCCCCCC
Q 019406          155 KENNWRMAEAGTMLEEVTEVGEPIASDNMLVRYHPPIDE  193 (341)
Q Consensus       155 ~e~~~r~~~~~~~~~~~~~~~~~~~~~~~Iv~yqp~~~e  193 (341)
                      ......+...+..           .....+++|+|..+.
T Consensus       209 ~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~  236 (304)
T KOG0627|consen  209 QPGNKNFKELNSE-----------PSYPKSVTRQPSAND  236 (304)
T ss_pred             hhhhhccccccCC-----------CCCccceeecCCCCc
Confidence            5311111111100           006778888888776

>COG5169 HSF1 Heat shock transcription factor [Transcription]

Probab=99.74  E-value=3.5e-19  Score=170.69  Aligned_cols=124  Identities=23%  Similarity=0.252  Sum_probs=87.4

Q ss_pred             CcccccCCc---chHHhhhcCCCCCCccccC---------CC-CceeecCCccccchhhHHhhhhcCCCCCcchhhhccc
Q 019406            3 LKLNYLKYQ---LSLKQLLTFSFSQGFRKID---------TD-RWEFANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQ   69 (341)
Q Consensus         3 lLPkYFKHs---SFvRQLNm~l~~YGFRKVd---------pD-rWEFANe~F~RGq~hLLknIkRRK~~~s~~~q~s~qq   69 (341)
                      +||+||||+   ||||||||    ||||||.         ++ .|||.|++|++|..+||++|+|||.+.....   .  
T Consensus        51 iLpr~FKh~NfaSFVRQLN~----YgFhKv~h~~~~~~~~n~~~wef~~~nF~~g~~~~L~~i~r~ka~~~~~~---~--  121 (282)
T COG5169          51 ILPRYFKHGNFASFVRQLNK----YGFHKVSHKSGQRSYYNENVWEFGNKNFQLGMIELLKKIKRKKAPSNRVD---S--  121 (282)
T ss_pred             hhhhhhcccCHHHHHHHHHh----cCcEeccCCcccccccchhheeecCchhccCcHHHHHHhhhhhcCccccc---c--
Confidence            799999999   99999999    9999997         12 3999999999999999999999887643211   0  


Q ss_pred             ccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019406           70 SEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM  142 (341)
Q Consensus        70 q~~~~~~~~e~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~  142 (341)
                       .+....|..    +  .+++.+-..+..+..++.+|+..+++++..+..+...+..--.+...+.++|+.+-
T Consensus       122 -~~~s~~~~~----~--~~~~~~i~~~~~~~~~~S~l~~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~l~~~s  187 (282)
T COG5169         122 -NNESKDAMM----N--IEVENIILPQSELYNSLSSLSNVNQTLLLYLNELKEYNYRNLRTIDDINAMLADLS  187 (282)
T ss_pred             -cCCCCcccc----c--hhhhhhhchhcccCcchhHHhhhhHHHhhhhccccchhhhcccccchhhhcccCcc
Confidence             000111110    0  35666666677777777777777777777777776666554445555666665544

>PF00447 HSF_DNA-bind: HSF-type DNA-binding; InterPro: IPR000232 Heat shock factor (HSF) is a transcriptional activator of heat shock genes []: it binds specifically to heat shock promoter elements, which are palindromic sequences rich with repetitive purine and pyrimidine motifs []

Probab=99.74  E-value=2.7e-19  Score=146.34  Aligned_cols=51  Identities=39%  Similarity=0.651  Sum_probs=42.7

Q ss_pred             CcccccCCc---chHHhhhcCCCCCCccccCCCC---------ceeecCCccccchhhHHhhhhcCC
Q 019406            3 LKLNYLKYQ---LSLKQLLTFSFSQGFRKIDTDR---------WEFANDGFVRDQKHLLNNICRRKN   57 (341)
Q Consensus         3 lLPkYFKHs---SFvRQLNm~l~~YGFRKVdpDr---------WEFANe~F~RGq~hLLknIkRRK~   57 (341)
                      |||+||||+   |||||||+    |||+||..+.         |+|+|++|+||+++||.+|+||++
T Consensus        40 vLp~~F~~~~~~SF~RQLn~----yGF~k~~~~~~~~~~~~~~~~f~h~~F~r~~~~lL~~I~r~~~  102 (103)
T PF00447_consen   40 VLPKYFKHSNFSSFVRQLNM----YGFKKVSSDSNQSSLSSNIWEFYHPNFRRGQPDLLSKIKRRKS  102 (103)
T ss_dssp             THHHHSST--HHHHHHHHHH----TTEEECC-SSCTTSSTTTTEEEEETT-BTTBCCCTTTS---TT
T ss_pred             ccccccCccccceeeeEeee----eeeEEEecCccccccCCCCeEECCcCccCCCHHHHhhCccCCC
Confidence            899999998   99999999    9999998543         999999999999999999999975

Under normal conditions, HSF is a homo-trimeric cytoplasmic protein, but heat shock activation results in relocalisation to the nucleus []. Each HSF monomer contains one C-terminal and three N-terminal leucine zipper repeats []. Point mutations in these regions result in disruption of cellular localisation, rendering the protein constitutively nuclear []. Two sequences flanking the N-terminal zippers fit the consensus of a bi- partite nuclear localisation signal (NLS). Interaction between the N- and C-terminal zippers may result in a structure that masks the NLS sequences: following activation of HSF, these may then be unmasked, resulting in relocalisation of the protein to the nucleus []. The DNA-binding component of HSF lies to the N terminus of the first NLS region, and is referred to as the HSF domain.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1FBQ_B 1FYL_B 1FBS_A 1FYM_B 3HTS_B 2HTS_A 3HSF_A 1FBU_B 1FYK_A 2LDU_A ....

>smart00415 HSF heat shock factor

Probab=99.74  E-value=5.1e-19  Score=146.12  Aligned_cols=49  Identities=51%  Similarity=0.794  Sum_probs=47.2

Q ss_pred             CcccccCCc---chHHhhhcCCCCCCccccCC-----------CCceeecCCccccchhhHHhhhhc
Q 019406            3 LKLNYLKYQ---LSLKQLLTFSFSQGFRKIDT-----------DRWEFANDGFVRDQKHLLNNICRR   55 (341)
Q Consensus         3 lLPkYFKHs---SFvRQLNm~l~~YGFRKVdp-----------DrWEFANe~F~RGq~hLLknIkRR   55 (341)
                      |||+||||+   ||+|||||    ||||||.+           +.|||.|++|+||+++||.+|+||
T Consensus        43 vLp~~Fk~~~~~SF~RqLn~----yGF~k~~~~~~~~~~~~~~~~~~F~h~~F~Rg~~~lL~~I~Rk  105 (105)
T smart00415       43 LLPRYFKHNNFSSFVRQLNM----YGFRKVDPEFQGILYNFTSDQWEFANPDFVRGQPELLRNIKRK  105 (105)
T ss_pred             HHHHhcCCCCHHHHHHHHHh----cCCEEeccccccccccCCCCceEEECcCccCcCHHHHHhCcCC
Confidence            799999999   99999999    99999986           789999999999999999999997

>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part

Probab=92.33  E-value=0.32  Score=42.49  Aligned_cols=62  Identities=15%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHhhcCcccccchh
Q 019406           97 NALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQNPSFLVQLLQPKENNWRM  161 (341)
Q Consensus        97 ~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~qnP~fl~qLvqq~e~~~r~  161 (341)
                      +++..||+.+++.+..+...+.+|-++++..++.+++|.++-|+++++   +...+.+-+-+.++
T Consensus         2 ~~~~kEi~~l~~~lk~~~~~i~ailek~~s~~~~~e~lEsiAAKIIkD---isdkIdkCeC~Kel   63 (121)
T PF03310_consen    2 ATIIKEISELIQELKKIESDIKAILEKLQSTEQDQENLESIAAKIIKD---ISDKIDKCECNKEL   63 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS--HHHHHHHHHHHHHHH---HHHHHHT-TTHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH---HHHHHHhchhhHHH
Confidence            456789999999999999999999999999999999999999999997   66666554433344

A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.54  E-value=2  Score=34.76  Aligned_cols=54  Identities=26%  Similarity=0.352  Sum_probs=43.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406           84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM  140 (341)
Q Consensus        84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLak  140 (341)
                      -|.-||+.||..++.|.+|...+++....+..+...+.+-.++   .|..+-+.|.+
T Consensus        22 LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~---WQerlrsLLGk   75 (79)
T COG3074          22 LLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNG---WQERLRALLGK   75 (79)
T ss_pred             HHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhh
Confidence            3556999999999999999999999999999988888877765   44455555544

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []

Probab=90.17  E-value=2.9  Score=36.30  Aligned_cols=60  Identities=22%  Similarity=0.353  Sum_probs=46.3

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406           80 IDHSALWKEVENLKAGKNALTQELLKLRQYQET---ADNKLLLLRDRVQGMEKSQQQMLSFLV  139 (341)
Q Consensus        80 ~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~---~~~el~~leeRLq~~EqrQQQMmsFLa  139 (341)
                      +....+..++.+|...+..+..||++|-..+..   ...++..++..+..++.|.+.++..|.
T Consensus        30 ~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellG   92 (120)
T PF12325_consen   30 GELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLG   92 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455677788888888888899999999888744   456677888888888888877776653

The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.90  E-value=1.6  Score=35.72  Aligned_cols=43  Identities=28%  Similarity=0.349  Sum_probs=30.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
Q 019406           84 ALWKEVENLKAGKNALTQELLK-------LRQYQETADNKLLLLRDRVQG  126 (341)
Q Consensus        84 ~L~~EIe~LKrDq~~L~qEL~r-------LRQqqq~~~~el~~leeRLq~  126 (341)
                      -|.-||+.||..+..|.+|+..       |+++++.+..+-....+|+++
T Consensus        22 LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~~WqerLr~   71 (79)
T PRK15422         22 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQA   71 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566999999999999999998       445555555555555555543

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=89.73  E-value=3.2  Score=33.04  Aligned_cols=45  Identities=24%  Similarity=0.303  Sum_probs=34.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406           83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGM  127 (341)
Q Consensus        83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~  127 (341)
                      ..|..||+.||..+..|..+-..|+++++.+..+-.+..+|++++
T Consensus        21 ~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~L   65 (72)
T PF06005_consen   21 ALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSL   65 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456678888888888888888888888887777777777777654

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function

Probab=89.28  E-value=1.7  Score=40.21  Aligned_cols=76  Identities=14%  Similarity=0.170  Sum_probs=33.1

Q ss_pred             eecCCccccchhhHHhhhhcCCCCCcchhhhcccccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406           36 FANDGFVRDQKHLLNNICRRKNTQGSEQRKSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLRQYQETADN  115 (341)
Q Consensus        36 FANe~F~RGq~hLLknIkRRK~~~s~~~q~s~qqq~~~~~~~~e~~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~  115 (341)
                      =.||.|...+++||..|+=.   |..         + ++.+                     .....+.+||++++.++.
T Consensus        16 ~~~PdFf~~~~~ll~~l~~p---h~~---------~-~avS---------------------L~erQ~~~LR~~~~~L~~   61 (225)
T PF04340_consen   16 RQHPDFFERHPELLAELRLP---HPS---------G-GAVS---------------------LVERQLERLRERNRQLEE   61 (225)
T ss_dssp             --------------------------------------HHH---------------------HHHHHHHHHHHHHHHHHH
T ss_pred             HhCcHHHHhCHHHHHHcCCC---CCC---------C-Cccc---------------------HHHHHHHHHHHHHHHHHH
Confidence            36999999999999998631   111         0 1111                     122556666777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 019406          116 KLLLLRDRVQGMEKSQQQMLSFLVMAMQNP  145 (341)
Q Consensus       116 el~~leeRLq~~EqrQQQMmsFLakv~qnP  145 (341)
                      ++..|-+.-+.-++.++++..+..+++.-.
T Consensus        62 ~l~~Li~~Ar~Ne~~~~~~~~l~l~LL~a~   91 (225)
T PF04340_consen   62 QLEELIENARENEAIFQRLHRLVLALLAAR   91 (225)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            777777777777888888877777777644

; PDB: 3E98_B.

>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=85.36  E-value=7.3  Score=36.71  Aligned_cols=63  Identities=14%  Similarity=0.276  Sum_probs=51.0

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019406           81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ  143 (341)
Q Consensus        81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~q  143 (341)
                      ....+..+++.|+++...|.....++.........++..+++++...+...+.+..+|.+++.
T Consensus        50 e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~  112 (251)
T PF11932_consen   50 EKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID  112 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677788888888888888888888888888888888888888888888888888877775

However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=85.12  E-value=8.9  Score=34.21  Aligned_cols=61  Identities=28%  Similarity=0.318  Sum_probs=50.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 019406           83 SALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAMQ  143 (341)
Q Consensus        83 ~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~q  143 (341)
                      .+|..+++.|-.....|..||..++.+...+...++.+.+|+...|..+-.+.++|..+=+
T Consensus        55 e~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~  115 (140)
T PF10473_consen   55 ETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQ  115 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4677788888888888899999999999999999999999999999988887777765433

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures

Probab=83.63  E-value=12  Score=29.68  Aligned_cols=60  Identities=20%  Similarity=0.255  Sum_probs=51.8

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406           81 DHSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVM  140 (341)
Q Consensus        81 ~~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLak  140 (341)
                      ....|+.|-+.|.+....+..-|-+||.+...+...+..+..|+...+..-..+-.+|.+
T Consensus        13 ~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~~   72 (74)
T PF12329_consen   13 QIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLKR   72 (74)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            346788999999999999999999999999999999999999999888877777666543

The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=83.09  E-value=5.5  Score=29.07  Aligned_cols=41  Identities=24%  Similarity=0.363  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406           85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ  125 (341)
Q Consensus        85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq  125 (341)
                      |+.+-+.||+....|..+-.+|.++++.+..++..+..+++
T Consensus         3 lE~Dy~~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~   43 (45)
T PF02183_consen    3 LERDYDALKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQ   43 (45)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45566677777777777777777777777777777776654

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02449 conserved hypothetical protein TIGR02449

Probab=82.45  E-value=6.8  Score=30.89  Aligned_cols=41  Identities=22%  Similarity=0.194  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406           85 LWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQ  125 (341)
Q Consensus        85 L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq  125 (341)
                      |..-.++|+.++..|.+++..++.+...+..++...+.|+.
T Consensus        12 Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE   52 (65)
T TIGR02449        12 LLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE   52 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566666666666666655555554444444444443

Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=80.83  E-value=12  Score=34.38  Aligned_cols=54  Identities=20%  Similarity=0.290  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 019406           89 VENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQMLSFLVMAM  142 (341)
Q Consensus        89 Ie~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMmsFLakv~  142 (341)
                      ...++.++..|..|+.+|++++..+..++..+..++...+..-+.|+..+-++-
T Consensus        99 ~~~~~~e~~~l~~e~~~l~~~~e~Le~e~~~L~~~~~~~~eDY~~L~~Im~RAR  152 (161)
T TIGR02894        99 DQALQKENERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQTLIDIMDRAR  152 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556777888888889999999999999999999999999888888888876653

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	341
1hks_A	106	Heat-shock transcription factor; transcription reg	9e-09
2ldu_A	125	Heat shock factor protein 1; structural genomics,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A Length = 106

 Score = 51.6 bits (124), Expect = 9e-09
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 6/46 (13%)

Query: 16  QLLTFSFS------QGFRKIDTDRWEFANDGFVRDQKHLLNNICRR 55
           QL  + F        G  + D D  EF++  F R+   LL+ I R+
Sbjct: 61  QLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK 106

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens} Length = 125

 Score = 51.7 bits (124), Expect = 1e-08
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 7/51 (13%)

Query: 16  QLLTFSF-------SQGFRKIDTDRWEFANDGFVRDQKHLLNNICRRKNTQ 59
           QL  + F         G  K + D  EF +  F+R Q+ LL NI R+  + 
Sbjct: 74  QLNMYGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTSV 124

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 3e-05
 Identities = 72/392 (18%), Positives = 125/392 (31%), Gaps = 97/392 (24%)

Query: 1   MSLKLNYLKYQLSLKQLLTFSFSQGFRKIDTDRWEFANDGFVRD------QKHLLNNICR 54
           M  +    +Y    K +L   F   F   + D      D  V+D       K  +++I  
Sbjct: 7   MDFETGEHQY--QYKDIL-SVFEDAFVD-NFD----CKD--VQDMPKSILSKEEIDHIIM 56

Query: 55  RKNTQGSEQR-------KSLQQSEKLVEPCEKIDHSALWKEVENLKAGKNALTQELLKLR 107
            K+      R       K  +  +K VE   +I++  L   +      K    Q  +  R
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPI------KTEQRQPSMMTR 110

Query: 108 QYQETADNKLLLLRDRVQGMEK---SQQQMLSFLVMAMQNPSFLVQLLQPKENNWR---- 160
            Y E  D    L  D  Q   K   S+ Q    L  A+         L+P +N       
Sbjct: 111 MYIEQRDR---LYND-NQVFAKYNVSRLQPYLKLRQALLE-------LRPAKN---VLID 156

Query: 161 -MAEAG-TMLEEVTEVGEPIASDNMLVRYHP-PI-------DETPKPVLKPVTDSGNQMA 210
            +  +G T +    +V         +       I         +P+ VL+ +     Q+ 
Sbjct: 157 GVLGSGKTWV--ALDV----CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 211 SD---TSDGMKDVFMNI----DFLKMLMDENQAPFIPLDLHN--DGE-WEKLLLANPILD 260
            +    SD   ++ + I      L+ L+         L L N  + + W    L+  IL 
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL 270

Query: 261 NSEDTQVDKDKEVDKEGHTDVDMEAEPAVSGSELERL--NNLELLLQEL----------- 307
            +   QV          H  +D      ++  E++ L    L+   Q+L           
Sbjct: 271 TTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 308 -----DKSQNFDNELENARHLEF--LTQKIEL 332
                +  ++     +N +H+    LT  IE 
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
1hks_A	106	Heat-shock transcription factor; transcription reg	99.86
2ldu_A	125	Heat shock factor protein 1; structural genomics,	99.85
3hts_B	102	Heat shock transcription factor; transcription reg	99.57
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	88.33
1deb_A	54	APC protein, adenomatous polyposis coli protein; c	82.43

>1hks_A Heat-shock transcription factor; transcription regulation; NMR {Drosophila melanogaster} SCOP: a.4.5.22 PDB: 1hkt_A

Probab=99.86  E-value=5.6e-23  Score=169.45  Aligned_cols=50  Identities=34%  Similarity=0.413  Sum_probs=47.5

Q ss_pred             CCcccccCCc---chHHhhhcCCCCCCccccC----------CCCceeecCCccccchhhHHhhhhc
Q 019406            2 SLKLNYLKYQ---LSLKQLLTFSFSQGFRKID----------TDRWEFANDGFVRDQKHLLNNICRR   55 (341)
Q Consensus         2 slLPkYFKHs---SFvRQLNm~l~~YGFRKVd----------pDrWEFANe~F~RGq~hLLknIkRR   55 (341)
                      .|||+||||+   ||||||||    ||||||.          ++.|||+||+|+||+++||++|+||
T Consensus        44 ~vLp~yFkh~n~~SFvRQLN~----YGF~Kv~~~~~~~~~~~~~~~ef~h~~F~Rg~~~LL~~IkRk  106 (106)
T 1hks_A           44 ELLPLNYKHNNMASFIRQLNM----YGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TTSTTTTSCCCHHHHHHHHHH----HCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             HHhHHhcCCCcHHHHHHhhhc----CCCeEEecccccCccCCCCceEEECcCccCcCHHHHhhCcCC
Confidence            4899999999   99999999    9999994          5889999999999999999999997

>2ldu_A Heat shock factor protein 1; structural genomics, northeast structural genomics consortiu DNA-binding, PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=99.85  E-value=1e-22  Score=172.85  Aligned_cols=52  Identities=37%  Similarity=0.528  Sum_probs=49.2

Q ss_pred             CcccccCCc---chHHhhhcCCCCCCccccC-----------CCCceeecCCccccchhhHHhhhhcCCC
Q 019406            3 LKLNYLKYQ---LSLKQLLTFSFSQGFRKID-----------TDRWEFANDGFVRDQKHLLNNICRRKNT   58 (341)
Q Consensus         3 lLPkYFKHs---SFvRQLNm~l~~YGFRKVd-----------pDrWEFANe~F~RGq~hLLknIkRRK~~   58 (341)
                      |||+||||+   ||||||||    ||||||.           ++.|||+||+|+||+++||++|+||+++
T Consensus        58 vLp~yFkh~nfsSFvRQLN~----YGF~Kv~~~~~~~~~~~~~~~~eF~H~~F~Rg~~~LL~~IkRk~~~  123 (125)
T 2ldu_A           58 VLPKYFKHNNMASFVRQLNM----YGFRKVVHIEQGGLVKPERDDTEFQHPCFLRGQEQLLENIKRKVTS  123 (125)
T ss_dssp             HHHHHSSCCCHHHHHHHHHH----TTCEEEECSCCSSSSSCSSCCEEEECTTCBTTBGGGTTTSCCCTTS
T ss_pred             HhHHhcCCCcHHHHHHHhcc----cCceEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCCCCC
Confidence            799999999   99999999    9999994           5789999999999999999999999875

>3hts_B Heat shock transcription factor; transcription regulation, DNA-binding protein, complex (WING helix_TURN_ helix-DNA); 1.75A {Kluyveromyces lactis} SCOP: a.4.5.22 PDB: 2hts_A 1fyk_A* 1fym_A 1fyl_A 3hsf_A 1fbu_A 1fbs_A 1fbq_A

Probab=99.57  E-value=2.6e-16  Score=129.90  Aligned_cols=34  Identities=32%  Similarity=0.625  Sum_probs=32.8

Q ss_pred             CcccccCCc---chHHhhhcCCCCCCccccC-----------CCCceeecCC
Q 019406            3 LKLNYLKYQ---LSLKQLLTFSFSQGFRKID-----------TDRWEFANDG   40 (341)
Q Consensus         3 lLPkYFKHs---SFvRQLNm~l~~YGFRKVd-----------pDrWEFANe~   40 (341)
                      |||+||||+   ||||||||    ||||||.           +++|||+||+
T Consensus        53 VLp~yFkh~nfsSFvRQLN~----YGF~Kv~~~~~g~~~~~~~~~wEF~n~~  100 (102)
T 3hts_B           53 VLPKYFKHSNFASFVRQLNM----YGWHKVQDVKSGSMLSNNDSRWEFENER  100 (102)
T ss_dssp             THHHHCSSCCHHHHHHHHHH----TTEEECC---------CCSCCEEEEECC
T ss_pred             HHHHhcCCCcHHHHHHHhhc----CCceEeeccccCcccCCCcCCeEecCCC
Confidence            899999999   99999999    9999998           7899999997

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=88.33  E-value=3.7  Score=32.58  Aligned_cols=52  Identities=27%  Similarity=0.389  Sum_probs=33.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406           84 ALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQGMEKSQQQML  135 (341)
Q Consensus        84 ~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~~EqrQQQMm  135 (341)
                      -|.-||+.||..+..|.+|...++.....+..++..+.+-+..-+.|.+.++
T Consensus        24 lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL   75 (81)
T 2jee_A           24 LLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3556999999999999999998555555555555555544443333333333

>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1

Probab=82.43  E-value=7.5  Score=28.53  Aligned_cols=45  Identities=22%  Similarity=0.231  Sum_probs=38.3

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 019406           82 HSALWKEVENLKAGKNALTQELLKLRQYQETADNKLLLLRDRVQG  126 (341)
Q Consensus        82 ~~~L~~EIe~LKrDq~~L~qEL~rLRQqqq~~~~el~~leeRLq~  126 (341)
                      +..|..+|+.||+++..|.+||..--.+...++++-..|.+-+..
T Consensus         5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~   49 (54)
T 1deb_A            5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQ   49 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHH
Confidence            456788999999999999999999888888888888888776654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	341
d1hksa_	106	a.4.5.22 (A:) Heat-shock transcription factor {Dro	3e-07

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]} Length = 106

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

 Score = 46.0 bits (109), Expect = 3e-07
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 1   MSLKLNYLKYQLSLKQLLTFSF------SQGFRKIDTDRWEFANDGFVRDQKHLLNNICR 54
           + L   +      ++QL  + F        G  + D D  EF++  F R+   LL+ I R
Sbjct: 46  LPLNYKHNNMASFIRQLNMYGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKR 105

Query: 55  R 55
           +
Sbjct: 106 K 106

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	341
d1hksa_	106	Heat-shock transcription factor {Drosophila melano	99.73
d2htsa_	92	Heat-shock transcription factor {Milk yeast (Kluyv	99.24

>d1hksa_ a.4.5.22 (A:) Heat-shock transcription factor {Drosophila melanogaster [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=99.73  E-value=2.6e-19  Score=145.30  Aligned_cols=50  Identities=34%  Similarity=0.413  Sum_probs=46.6

Q ss_pred             CCcccccCCc---chHHhhhcCCCCCCccccC----------CCCceeecCCccccchhhHHhhhhc
Q 019406            2 SLKLNYLKYQ---LSLKQLLTFSFSQGFRKID----------TDRWEFANDGFVRDQKHLLNNICRR   55 (341)
Q Consensus         2 slLPkYFKHs---SFvRQLNm~l~~YGFRKVd----------pDrWEFANe~F~RGq~hLLknIkRR   55 (341)
                      .|||+||||+   |||||||+    ||||||.          ++.|+|+|++|+||+++||.+|+||
T Consensus        44 ~vLp~~Fk~~~~~SF~RQLn~----yGF~kv~~~~~~~~~~~~~~~~f~h~~F~Rg~p~ll~~IkRr  106 (106)
T d1hksa_          44 ELLPLNYKHNNMASFIRQLNM----YGFHKITSIDNGGLRFDRDEIEFSHPFFKRNSPFLLDQIKRK  106 (106)
T ss_dssp             TTSTTTTSCCCHHHHHHHHHH----HCCCCSSCSSSCCSSCTTSTTEECCTTCCSSCTTSTTTCCCC
T ss_pred             HHhhhhccccCHHHHHHHHHH----CCCEEeeccccccccCCCCccEEECccccCCCHHHHhhCcCC
Confidence            4899999999   99999999    9999984          5679999999999999999999986

>d2htsa_ a.4.5.22 (A:) Heat-shock transcription factor {Milk yeast (Kluyveromyces lactis) [TaxId: 28985]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Heat-shock transcription factor
domain: Heat-shock transcription factor
species: Milk yeast (Kluyveromyces lactis) [TaxId: 28985]

Probab=99.24  E-value=5.2e-13  Score=106.21  Aligned_cols=35  Identities=31%  Similarity=0.606  Sum_probs=31.7

Q ss_pred             CcccccCCc---chHHhhhcCCCCCCccccC-----------CCCceeecCCc
Q 019406            3 LKLNYLKYQ---LSLKQLLTFSFSQGFRKID-----------TDRWEFANDGF   41 (341)
Q Consensus         3 lLPkYFKHs---SFvRQLNm~l~~YGFRKVd-----------pDrWEFANe~F   41 (341)
                      |||+||||+   ||+||||+    ||||||.           ++.|||.|+.+
T Consensus        43 vLp~~F~~~~~~SF~RQLn~----yGF~kv~~~~~~~~~~~~~~~~eF~h~~~   91 (92)
T d2htsa_          43 VLPKYFKHSNFASFVRQLNM----YGWHKVQDVKSGSMLSNNDSRWEFENERH   91 (92)
T ss_dssp             THHHHCTTCCHHHHHHHHHH----TTEECCCCSCTTC----CCCCEEEEESCC
T ss_pred             HHHHhcCCCCHHHHHHHHHh----CCeEEeecCCCCCcccCCCCCEEEecCCC
Confidence            799999999   99999999    9999995           46799999853