Citrus Sinensis ID: 019413

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
MDEEDEILSPPPASPTGSPSNGRISVTVAAAPPVQIPPQQQQQNVALALPSQRNGGGGGREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIMSGGGSSKWVFFEKLDQLIGPTAKIPVSAAATASAVRVPVGIPVGVRNPGKNQQERNVFVGGQRSSRMELRKRAAVETEEEEESEEESRDSIDSFPPAKRKRVEGESGKGKEKGGWGDSVKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLKHGRRTGNAGNHHRSNDNGNNNNISDYSNE
ccccccccccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccc
cccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccc
mdeedeilspppasptgspsngrisvtvaaappvqippqqqqQNVALalpsqrngggggredcwsegatgvLIDAWGERYLELSRGNLKQKHWKEVADIVSSredytkapktdiqcknrIDTVKKKYKLEKTKimsgggsskwVFFEKLdqligptakipvsaaatasavrvpvgipvgvrnpgknqqernvfvggqrssRMELRKRAAveteeeeeseeesrdsidsfppakrkrvegesgkgkekggwgdSVKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLkhgrrtgnagnhhrsndngnnnnisdysne
mdeedeilspppasptgspsNGRISVTVAAAPPVQIPPQQQQQNVALALPSQRNGGGGGREDCWSEGATGVLIDAWGERYLELsrgnlkqkhwKEVADivssredytkapktdiqcknridtvkkkyklektkimsgggsskwVFFEKLDQLIGPTAKIPVSAAATASAVRVPVGipvgvrnpgknqqernvfvggqrssrmelrkraaveteeeeeseeesrdsidsfppakrkrvegesgkgkekggwgdsvKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLKHGRRtgnagnhhrsndngnnnnisdysne
MDEEDEILspppasptgspsNGRISVTvaaappvqippqqqqqnvalalpSQRNGGGGGREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVkkkyklektkIMSGGGSSKWVFFEKLDQLIGPtakipvsaaatasavrvpvgipvgvrnpgKNQQERNVFVGGQRSSRMELRKRAAVeteeeeeseeesRDSIDSFPPAKRKRVegesgkgkekggwgDSVKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLKHGRRTGNAgnhhrsndngnnnnisdysnE
**************************************************************CWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIMSGGGSSKWVFFEKLDQLIGPTAKIPVSAAATASAVRVPVGIPVGV*********************************************************************WGDSVKLLTQAILKFGEAYE******************************FFM***************************************
*******************************************************************ATGVLIDAWGERYLE****NLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKY***************WVFFEKLDQLI*********************************************************************************************************QAILKFGEAYE***********************MELQRMQFFMK**************************************
********************NGRISVTVAAAPPVQIPPQQQQQNVALALPS*********EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIMSGGGSSKWVFFEKLDQLIGPTAKIPVSAAATASAVRVPVGIPVGVRNPGKNQQERNVFVGG*****************************************************WGDSVKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQ**********GNHHRSNDNGNNNNISDYSNE
**********************RISVTVAAAPPVQIPP***********************DCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIMSGGGSSKWVFFEKLDQLIGPT**********************************************************************************************GDSVKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLKHG***************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDEEDEILSPPPASPTGSPSNGRISVTVAAAPPVQIPPQQQQQNVALALPSQRNGGGGGREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIMSGGGSSKWVFFEKLDQLIGPTAKIPVSAAATASAVRVPVGIPVGVRNPGKNQQERNVFVGGQRSSxxxxxxxxxxxxxxxxxxxxxSRDSIDSFPPAKRKRVEGESGKGKEKGGWGDSVKLLTQAILKFGEAYEQAESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLKHGRRTGNAGNHHRSNDNGNNNNISDYSNE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
359482340364 PREDICTED: uncharacterized protein LOC10 0.891 0.835 0.577 2e-92
297742957318 unnamed protein product [Vitis vinifera] 0.824 0.883 0.602 3e-90
449480473373 PREDICTED: uncharacterized LOC101208469 0.923 0.844 0.588 2e-87
15231799 443 sequence-specific DNA binding transcript 0.891 0.686 0.501 3e-85
449447932328 PREDICTED: uncharacterized protein LOC10 0.806 0.838 0.601 1e-84
297834270 445 transcription factor [Arabidopsis lyrata 0.891 0.683 0.491 4e-84
357514167371 hypothetical protein MTR_8g022290 [Medic 0.797 0.733 0.586 2e-80
356559073370 PREDICTED: uncharacterized protein LOC10 0.909 0.837 0.553 6e-80
356519990368 PREDICTED: uncharacterized protein LOC10 0.903 0.836 0.573 6e-80
255576577422 transcription factor, putative [Ricinus 0.853 0.689 0.633 6e-80
>gi|359482340|ref|XP_003632758.1| PREDICTED: uncharacterized protein LOC100241240 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  345 bits (884), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 205/355 (57%), Positives = 240/355 (67%), Gaps = 51/355 (14%)

Query: 3   EEDEILSPPPASPTGSP----SNGRISVTVAAAPPVQIPPQQQQQNVALALPSQR----- 53
           E+DE +   P+  TGSP    SNGRI+VTVAAAPP        Q  + LALP Q+     
Sbjct: 2   EDDEEIQSHPSPDTGSPASPRSNGRITVTVAAAPP-------PQNTLTLALPIQQARTAG 54

Query: 54  --NGGGGGREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPK 111
              GGGGGREDCWSEGAT VLIDAWGERYLELSRGNLKQKHWK+VADIVSSREDYTK  K
Sbjct: 55  NGGGGGGGREDCWSEGATSVLIDAWGERYLELSRGNLKQKHWKDVADIVSSREDYTKTAK 114

Query: 112 TDIQCKNRIDTVKKKYKLEKTKIMSGGGSSKWVFFEKLDQLIGPTAKIPVSAAATASAV- 170
           TDIQCKNRIDTVKKKYKLEK KI +GGG SKW F+++LD LIGPTAKI  ++ ATA+ + 
Sbjct: 115 TDIQCKNRIDTVKKKYKLEKAKIAAGGGPSKWPFYQRLDHLIGPTAKIASASPATATPLP 174

Query: 171 --RVPVGIPVGVRNPGKNQQERNVFVGGQRSSRMELRKRAAVETEEEEESEEESRDSIDS 228
              VP+GIPVG+R+                  + +LR+RA V+++  +   E S DS DS
Sbjct: 175 LQNVPLGIPVGMRS-----VHHQQPQQKNPKQKQQLRRRAPVDSDSSQSEPEASPDSTDS 229

Query: 229 FPPA----KRKRVEGESGKGKEKGG---------------------WGDSVKLLTQAILK 263
           FPP     KR R++ E      +                       W +SV+ LTQAILK
Sbjct: 230 FPPETFERKRPRMQRELNSNTPRSAPVRSRGGGGGGGGGGSAADKNWSNSVRELTQAILK 289

Query: 264 FGEAYEQAESAKLQQVVEMEKQRMKFAKEMELQRMQFFMKTQLEISQLKHGRRTG 318
           FGEAYEQAE++KLQQV +ME+QRMKFAKE+ELQRMQFFMKTQLEISQL HGRR G
Sbjct: 290 FGEAYEQAETSKLQQVADMERQRMKFAKELELQRMQFFMKTQLEISQLNHGRRVG 344

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297742957|emb|CBI35824.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449480473|ref|XP_004155903.1| PREDICTED: uncharacterized LOC101208469 [Cucumis sativus] Back     alignment and taxonomy information
>gi|15231799|ref|NP_188034.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gi|9294645|dbj|BAB02984.1| unnamed protein product [Arabidopsis thaliana] gi|18176240|gb|AAL60009.1| unknown protein [Arabidopsis thaliana] gi|21281263|gb|AAM44901.1| unknown protein [Arabidopsis thaliana] gi|332641962|gb|AEE75483.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449447932|ref|XP_004141720.1| PREDICTED: uncharacterized protein LOC101208469 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297834270|ref|XP_002885017.1| transcription factor [Arabidopsis lyrata subsp. lyrata] gi|297330857|gb|EFH61276.1| transcription factor [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357514167|ref|XP_003627372.1| hypothetical protein MTR_8g022290 [Medicago truncatula] gi|355521394|gb|AET01848.1| hypothetical protein MTR_8g022290 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356559073|ref|XP_003547826.1| PREDICTED: uncharacterized protein LOC100782874 [Glycine max] Back     alignment and taxonomy information
>gi|356519990|ref|XP_003528651.1| PREDICTED: uncharacterized protein LOC100812599 [Glycine max] Back     alignment and taxonomy information
>gi|255576577|ref|XP_002529179.1| transcription factor, putative [Ricinus communis] gi|223531357|gb|EEF33193.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query341
TAIR|locus:2087472443 ASIL2 "Arabidopsis 6B-interact 0.304 0.234 0.769 2.3e-68
TAIR|locus:2014445383 ASIL1 "6B-interacting protein 0.739 0.657 0.442 6.2e-46
TAIR|locus:2074658249 AT3G11100 [Arabidopsis thalian 0.266 0.365 0.536 3.5e-38
TAIR|locus:2169722249 AT5G05550 [Arabidopsis thalian 0.272 0.373 0.484 2.4e-37
TAIR|locus:2076401321 AT3G58630 [Arabidopsis thalian 0.275 0.292 0.5 7.9e-33
TAIR|locus:2091757333 AT3G24490 [Arabidopsis thalian 0.255 0.261 0.384 2.3e-23
TAIR|locus:2096134296 AT3G54390 [Arabidopsis thalian 0.263 0.304 0.372 4.7e-18
TAIR|locus:2100108 542 AT3G10030 [Arabidopsis thalian 0.269 0.169 0.375 1.2e-12
TAIR|locus:2042401372 AT2G44730 [Arabidopsis thalian 0.263 0.241 0.311 1.2e-08
TAIR|locus:2087288310 AT3G24860 [Arabidopsis thalian 0.243 0.267 0.292 9.5e-08
TAIR|locus:2087472 ASIL2 "Arabidopsis 6B-interacting protein 1-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 422 (153.6 bits), Expect = 2.3e-68, Sum P(2) = 2.3e-68
 Identities = 80/104 (76%), Positives = 85/104 (81%)

Query:    51 SQRNGGGGGREDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAP 110
             S R  GGGGREDCWSE AT VLIDAWGERYLELSRGNLKQKHWKEVA+IVSSREDY K P
Sbjct:    71 SGRPTGGGGREDCWSEAATAVLIDAWGERYLELSRGNLKQKHWKEVAEIVSSREDYGKIP 130

Query:   111 KTDIQCKNRIDTVXXXXXXXXXXIMSGGGSSKWVFFEKLDQLIG 154
             KTDIQCKNRIDTV          I +GGG S+WVFF+KLD+LIG
Sbjct:   131 KTDIQCKNRIDTVKKKYKQEKVRIANGGGRSRWVFFDKLDRLIG 174
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0010431 "seed maturation" evidence=IMP
GO:0043687 "post-translational protein modification" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA
TAIR|locus:2014445 ASIL1 "6B-interacting protein 1-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2074658 AT3G11100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2169722 AT5G05550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076401 AT3G58630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091757 AT3G24490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096134 AT3G54390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100108 AT3G10030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042401 AT2G44730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087288 AT3G24860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
pfam1383784 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi 3e-17
smart0059589 smart00595, MADF, subfamily of SANT domain 3e-04
>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain Back     alignment and domain information 
 Score = 75.4 bits (186), Expect = 3e-17
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 8/90 (8%)

Query: 61  EDCWSEGATGVLIDAWGERYLELS-RGNLKQKH-WKEVADIVSSREDYTKAPKTDIQCKN 118
            + W++  T  LI+ WGER   L  RG  + KH W+E+A+ ++ R       ++  QCK 
Sbjct: 1   RNKWTDEETRALIEIWGERLDSLFQRGTKRNKHVWEEIAEKMAER----GYNRSAEQCKE 56

Query: 119 RIDTVKKKYKLEKTKIMSGGGSSKWVFFEK 148
           +   +KKKYK  K K  + G  S W FFE+
Sbjct: 57  KWKNLKKKYK--KEKESNKGSGSSWPFFEE 84

This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins. Length = 84
>gnl|CDD|214738 smart00595, MADF, subfamily of SANT domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 341
KOG4282345 consensus Transcription factor GT-2 and related pr 100.0
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 99.8
smart0059589 MADF subfamily of SANT domain. 98.62
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 98.58
PF1054585 MADF_DNA_bdg: Alcohol dehydrogenase transcription 98.48
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 98.3
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.6
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 97.12
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 97.03
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 96.79
PF0450498 DUF573: Protein of unknown function, DUF573; Inter 95.87
PLN03212249 Transcription repressor MYB5; Provisional 95.24
PLN03091 459 hypothetical protein; Provisional 95.16
PLN03212249 Transcription repressor MYB5; Provisional 93.92
PLN03091 459 hypothetical protein; Provisional 91.59
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 91.27
KOG1279506 consensus Chromatin remodeling factor subunit and 88.64
KOG0051607 consensus RNA polymerase I termination factor, Myb 81.15
KOG0048238 consensus Transcription factor, Myb superfamily [T 81.05
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 81.03
PRK13923170 putative spore coat protein regulator protein YlbO 80.81
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-31  Score=260.99  Aligned_cols=244  Identities=29%  Similarity=0.385  Sum_probs=155.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCCC
Q 019413           61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIMSGGGS  140 (341)
Q Consensus        61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~k~~sG~~~  140 (341)
                      ..+|+.+||++||++|++.|..|.+++++.++|++||.++..    .|++||+.|||+||+||+|+||++|.+...+...
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~----~g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~  129 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAE----LGYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEG  129 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHH----hCCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence            689999999999999999999999999999999999998876    5799999999999999999999999998766789


Q ss_pred             CCCcchHHHHHhhC-CCCCCCCcccccccCCCCCCCCCCCCC-CCC---------CCccccccccc-----CCCchhhHH
Q 019413          141 SKWVFFEKLDQLIG-PTAKIPVSAAATASAVRVPVGIPVGVR-NPG---------KNQQERNVFVG-----GQRSSRMEL  204 (341)
Q Consensus       141 s~W~fFd~LD~LLG-~~p~~~~~~~~~~~~~~~P~~~p~~~~-~~~---------~~q~~~~~~~~-----~~~~~~~~~  204 (341)
                      ++|+||..||.|+. ..+.... ....+.-...|+..++++. ...         ......+..+.     ......+.+
T Consensus       130 s~~~ff~~le~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  208 (345)
T KOG4282|consen  130 SSWKFFSELEALLITFKARPRS-DEVGPGNASAPLTLSVSSEPQFSSNPTELQFDGSSLEDSSQPSGLNEDNSNSSSPEP  208 (345)
T ss_pred             ccchHHHHHHHHHhccCCCCCC-CCCCcccccCccccCCCCCCCCCCCccccccCCCcCCCCCcccccCccccccCCCCC
Confidence            99999999999997 2221100 0000000111111111110 000         00000000000     000000000


Q ss_pred             HHhhhccccchhhhhhhccCCCCCCCCccccccccccCCCcCCCCCCchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 019413          205 RKRAAVETEEEEESEEESRDSIDSFPPAKRKRVEGESGKGKEKGGWGDSVKLLTQAILKFGEAYEQAE-SAKLQQVVEME  283 (341)
Q Consensus       205 r~r~~~~~s~~e~e~~~~~~~~ds~pp~~~kr~~~~~~~~~~~~~~~~~~~~la~ai~~fgE~yeR~E-~ak~~~~~elE  283 (341)
                      .......+.......+++.++.+..    .+.....+.......+.+..++++++++.+|+++|+++| ..++++|.++|
T Consensus       209 ~~~~~~~~~~~s~~~~~s~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~e  284 (345)
T KOG4282|consen  209 VAGSLSNDTSSSSSPDDSADSEGGK----SSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLERVEEKKEQERMSEEE  284 (345)
T ss_pred             CCcchhhccccccchhcccccccCC----CCCCCccccccccchhHHHHhhhhhhhHHHHHHHHHHHhccchHhhhhHHH
Confidence            0000000000000001111111000    000000011111233556789999999999999999999 99999999999


Q ss_pred             HHHHHHH---HHHHHHHHHHHHHHHHHHHHhhc
Q 019413          284 KQRMKFA---KEMELQRMQFFMKTQLEISQLKH  313 (341)
Q Consensus       284 k~Rme~~---~elE~~R~~~~~~~Q~ei~~~~~  313 (341)
                      +.||+++   +|+|++++++++++|++|+.|+.
T Consensus       285 ~~r~~~~~r~ke~e~~~~~~~~~~~~~i~~i~~  317 (345)
T KOG4282|consen  285 KWRMEEIERNKELELARQERIQETQLEIRSIKA  317 (345)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999   99999999999999999998873

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>smart00595 MADF subfamily of SANT domain Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information
>KOG0048 consensus Transcription factor, Myb superfamily [Transcription] Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query341
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 9e-11
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86 Back     alignment and structure
 Score = 56.7 bits (137), Expect = 9e-11
 Identities = 15/88 (17%), Positives = 37/88 (42%), Gaps = 5/88 (5%)

Query: 60  REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNR 119
           R + W +  T  LI          +     +  W++++  +  +  + ++P     C ++
Sbjct: 3   RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREK-GFDRSPD---MCTDK 58

Query: 120 IDTVKKKYKLEKTKIMSGGGSSKWVFFE 147
              + K++K  K     G GS+K  +++
Sbjct: 59  WRNLLKEFKKAKHH-DRGNGSAKMSYYK 85

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 99.82
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 97.65
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.47
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 97.45
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 97.44
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 97.36
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 97.33
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 97.32
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 97.32
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 97.3
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 97.15
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 97.12
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 97.12
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 97.11
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 97.1
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 96.99
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.99
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 96.96
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.9
2cjj_A93 Radialis; plant development, DNA-binding protein, 96.82
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 96.76
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 96.75
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 95.57
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.53
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 96.27
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 96.13
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 96.13
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 95.98
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 95.82
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 95.82
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 95.38
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 95.35
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 95.23
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 95.21
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 95.1
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 94.54
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 94.04
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 94.0
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 92.78
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 92.48
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 87.4
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 85.62
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 84.47
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 82.93
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
Probab=99.82  E-value=1e-20  Score=149.92  Aligned_cols=84  Identities=15%  Similarity=0.315  Sum_probs=74.2

Q ss_pred             CCCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 019413           60 REDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKKKYKLEKTKIMSGGG  139 (341)
Q Consensus        60 R~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKKrYKkEK~k~~sG~~  139 (341)
                      |...||++||.+||++|++...++..+..+..+|++||..|.++    |+.+|+.||++||++|++.||++|+..... +
T Consensus         3 R~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~----G~~rs~~qC~~K~~nL~k~Yk~~k~~~~~s-G   77 (86)
T 2ebi_A            3 RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREK----GFDRSPDMCTDKWRNLLKEFKKAKHHDRGN-G   77 (86)
T ss_dssp             CSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHCSCSSCCCCC-C
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHhcccC-C
Confidence            66899999999999999999988888888888999999999985    588999999999999999999999987532 2


Q ss_pred             CCCCcchHH
Q 019413          140 SSKWVFFEK  148 (341)
Q Consensus       140 ~s~W~fFd~  148 (341)
                      ..+|+||+.
T Consensus        78 ~~~~~yf~e   86 (86)
T 2ebi_A           78 SAKMSYYKE   86 (86)
T ss_dssp             CCCCCCCCC
T ss_pred             CCCCCCCCc
Confidence            339999973
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query341
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 97.77
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 97.68
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.41
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 97.41
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.28
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.25
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 97.19
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.97
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 96.96
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.95
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 96.95
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 96.65
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 96.65
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 94.36
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 94.23
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=1.3e-05  Score=56.20  Aligned_cols=50  Identities=20%  Similarity=0.282  Sum_probs=38.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhHHhhhcCCcchHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHHHH
Q 019413           61 EDCWSEGATGVLIDAWGERYLELSRGNLKQKHWKEVADIVSSREDYTKAPKTDIQCKNRIDTVKK  125 (341)
Q Consensus        61 ~~~WSe~ET~~LIdaWgdr~~ql~rg~lR~k~W~eVA~~vs~r~g~~g~~rT~~QCRnKIdnLKK  125 (341)
                      ...||.+|...|+++....      |.   ..|..||..+.      ...||+.||++|+.+|+|
T Consensus         2 r~~WT~eED~~L~~~v~~~------G~---~~W~~I~~~~~------~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           2 RQAWLWEEDKNLRSGVRKY------GE---GNWSKILLHYK------FNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCHHHHHHHHHHHHHH------CT---TCHHHHHHHSC------CSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHH------CC---CCHHHHHhhcC------CCCCCHHHHHHHHHHHHC
Confidence            4579999999999987753      21   26999987542      135999999999999986
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure