Citrus Sinensis ID: 019416

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-
Protein Sequence
MLIDLNRPFDLEPQAPVPKNFLALALFPDEDKILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLPVLEE
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEcccccccccccccccccccEEEEEcccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccccccccEEEEEccccccccHHHHHccccccccEEEEEccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEccccccEEccccccccccccEEEEEcccccccccccccccccccEEEEccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccccccccccccccEEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccEEEcccccccccccccHHcccccccccHcccccccccccccEEEccccccHccccccccccccccEEEccccccHccccccccccHHcEEEcccccccccccccccccHHHHHHHHcccccccccccccccccccccEEEccccccHcccccccccccccEEEccccccHHccccccccHHHHHHHHcccccccccccccccccccEEEccccccHHccccHccccccccEEEccccccHccccccccccccccEEEccccHHHHcccccccccHcccEEEccccccHcccccccccccccEEEcccccccccccHHHHHHHHHccEEEcccccccccc
Coil and Loop (DISEMBL)
mlidlnrpfdlepqapvpknflalalfpdedkilgirtgetlesleIDNLSSLASFLRSELAATTVKQlkinkcpdLEVLLHRMAYTSLEYLefssclffsnskqdyfpttlkrlkicdcTNAELILKVLMDQKglaleslevdgcsslfslpinqlpatlRHLRIVNCMnlkslgesskirncdsvvgpegesslenmtsshtlelreLEIWDcleleflpedmhnftdlnllsisncpslesfpegglpntslTSLLISECenlmslphqihkatslqdlsvsgcpslmsfphgglppnlislgiidcenliplsQWELHKLKhlnkytilgglpvlee
Flexible Loop (DISEMBL)
mlidlnrpfdlepqapVPKNFLALALFPDEDKILGIRTGETLESLEIDNLSSLASFLRSELAATtvkqlkinkcpDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLkslgesskirnCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKhlnkytilgglpvlee
Low Complexity Region (SEG)
MLIDLNRPFDLEPQAPVPKNFLALALFPDEDKILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLPVLEE
Disordered region (IsUnstruct)
*****************PKNFLALALFPDEDKILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLG****************************LELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLPV***
Disordered Region (DISOPRED)
MLIDLNRPFDLEPQAPVPKNFLALALFPDEDKILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLPVLE*
Disordered Region (DISEMBL)
MLIDLNRPFDLEPQAPVPKNFLALALFPDEDKILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCD****************SHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLPVLEE
Disordered Region (DISPRO)
MLIDLNRPFDLEPQAPVPKNFLALALFPDEDKILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLP****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLIDLNRPFDLEPQAPVPKNFLALALFPDEDKILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLPVLEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	341	2.2.26 [Sep-21-2011]
Q9LRR5	1424	Putative disease resistan	yes	no	0.574	0.137	0.349	3e-21
Q7XA39	988	Putative disease resistan	N/A	no	0.533	0.184	0.317	7e-10
Q7XBQ9	970	Disease resistance protei	N/A	no	0.486	0.171	0.282	1e-06
Q7XA40	992	Putative disease resistan	N/A	no	0.609	0.209	0.270	3e-06
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.697	0.182	0.246	6e-06
P26337	630	Putative adenylate cyclas	N/A	no	0.653	0.353	0.292	1e-05
Q9FKZ0	815	Probable disease resistan	no	no	0.563	0.235	0.253	3e-05
Q9FKZ1	809	Probable disease resistan	no	no	0.510	0.215	0.265	5e-05
P23799	630	Putative adenylate cyclas	N/A	no	0.645	0.349	0.287	0.0001
Q7XA42	979	Putative disease resistan	N/A	no	0.595	0.207	0.288	0.0001

>sp|Q9LRR5|DRL21_ARATH Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1

 Score =  102 bits (255), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 72/206 (34%), Positives = 104/206 (50%), Gaps = 10/206 (4%)

Query: 138  LESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNL---KSLGESSKIRNCDSVVGPEGES 194
            L  L +  C SL S P +  P TL+ L I +C  L   +SL  +      + +      S
Sbjct: 1118 LHELLIIACHSLESFPGSHPPTTLKTLYIRDCKKLNFTESLQPTRSYSQLEYLFIGSSCS 1177

Query: 195  SLENMTSSHTLELRELEIWDCLELEFLPEDMH-----NFTDLNLLSISNCPSLESFPEGG 249
            +L N   S   +LR L I DC   +     +H     +   L  L I +CP+LE+FP+GG
Sbjct: 1178 NLVNFPLSLFPKLRSLSIRDCESFKTF--SIHAGLGDDRIALESLEIRDCPNLETFPQGG 1235

Query: 250  LPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIID 309
            LP   L+S+L+S C+ L +LP ++   TSL  L +  CP + + P GG P NL +L I  
Sbjct: 1236 LPTPKLSSMLLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRTLCISL 1295

Query: 310  CENLIPLSQWELHKLKHLNKYTILGG 335
            C+ L P  +W L  L++L    I GG
Sbjct: 1296 CDKLTPRIEWGLRDLENLRNLEIDGG 1321

Potential disease resistance protein.
Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 61/192 (31%), Positives = 96/192 (50%), Gaps = 10/192 (5%)

Query: 103 SKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLR 162
           S +  FP+ LK+L+I    + + ++K   ++K   LE + +  C  LF  P     ++++
Sbjct: 779 STRRSFPS-LKKLRIWFFRSLKGLMKEEGEEKFPMLEEMAILYCP-LFVFPT---LSSVK 833

Query: 163 HLRIVNCMNLKSLGESSKIRNCDSV-VGPEGESSL--ENMTSSHTLELRELEIWDCLELE 219
            L +    N + L   S +    S+ +G    ++   E M +S T  L  L  +D   L+
Sbjct: 834 KLEVHGNTNTRGLSSISNLSTLTSLRIGANYRATSLPEEMFTSLT-NLEFLSFFDFKNLK 892

Query: 220 FLPEDMHNFTDLNLLSISNCPSLESFPEGGLPN-TSLTSLLISECENLMSLPHQIHKATS 278
            LP  + +   L  L I +C SLESFPE GL   TSLT L +  C+ L  LP  +   T+
Sbjct: 893 DLPTSLTSLNALKRLQIESCDSLESFPEQGLEGLTSLTQLFVKYCKMLKCLPEGLQHLTA 952

Query: 279 LQDLSVSGCPSL 290
           L +L VSGCP +
Sbjct: 953 LTNLGVSGCPEV 964

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XBQ9|RGA2_SOLBU Disease resistance protein RGA2 OS=Solanum bulbocastanum GN=RGA2 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 56/198 (28%), Positives = 86/198 (43%), Gaps = 32/198 (16%)

Query: 108 FPT-----TLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLR 162
           FPT     +L++L I D  + + +LK   +++   LE + +  C      P   L + LR
Sbjct: 781 FPTRIRFPSLRKLDIWDFGSLKGLLKKEGEEQFPVLEEMIIHEC------PFLTLSSNLR 834

Query: 163 HLRIVNCMNLKSLGESSKIRNC-DSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFL 221
            L              + +R C + V     E   +N+ +     L+ L I  C  L+ L
Sbjct: 835 AL--------------TSLRICYNKVATSFPEEMFKNLAN-----LKYLTISRCNNLKEL 875

Query: 222 PEDMHNFTDLNLLSISNCPSLESFPEGGLPN-TSLTSLLISECENLMSLPHQIHKATSLQ 280
           P  + +   L  L I  C +LES PE GL   +SLT L +  C  L  LP  +   T+L 
Sbjct: 876 PTSLASLNALKSLKIQLCCALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLT 935

Query: 281 DLSVSGCPSLMSFPHGGL 298
            L + GCP L+     G+
Sbjct: 936 SLKIRGCPQLIKRCEKGI 953

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth. Confers a broad resistance to all known races of P.infestans.

Solanum bulbocastanum (taxid: 147425)

>sp|Q7XA40|RGA3_SOLBU Putative disease resistance protein RGA3 OS=Solanum bulbocastanum GN=RGA3 PE=2 SV=2

 Score = 53.1 bits (126), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 101/233 (43%), Gaps = 25/233 (10%)

Query: 75  PDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQK 134
           P LE L  +     +EY+E S   F +  +   FP+ L++L I    N + + ++   ++
Sbjct: 759 PCLESLELQDGSVEVEYVEDSG--FLTRRR---FPS-LRKLHIGGFCNLKGLQRMKGAEQ 812

Query: 135 GLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGES 194
              LE +++  C  +F  P      TL  ++ +        G  S I N  ++   +   
Sbjct: 813 FPVLEEMKISDCP-MFVFP------TLSSVKKLEIWGEADAGGLSSISNLSTLTSLK--- 862

Query: 195 SLENMTSSHTLE--LRELEIWDCLELEFL------PEDMHNFTDLNLLSISNCPSLESFP 246
              N T +  LE   + LE    L + FL      P  + +  +L  L I  C +LES P
Sbjct: 863 IFSNHTVTSLLEEMFKNLENLIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLP 922

Query: 247 EGGLPN-TSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGL 298
           E GL   +SLT L +  C  L  LP  +   T+L  L + GCP L+     G+
Sbjct: 923 EEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGI 975

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 52.0 bits (123), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 78/316 (24%), Positives = 132/316 (41%), Gaps = 78/316 (24%)

Query: 68   QLKINKCPDLEVLLHRMAYTSLEYLEFSSC---------------LFFSNSKQDYFP--- 109
            +L++ KC  LEVL   +  +SLE L+ S C               L+  N+  +  P   
Sbjct: 891  RLEMKKCTGLEVLPTDVNLSSLETLDLSGCSSLRSFPLISESIKWLYLENTAIEEIPDLS 950

Query: 110  --TTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIV 167
              T LK LK+ +C +   +   + + + L   S E+  C+ L  LPI+   ++L  L + 
Sbjct: 951  KATNLKNLKLNNCKSLVTLPTTIGNLQKLV--SFEMKECTGLEVLPIDVNLSSLMILDLS 1008

Query: 168  NCMNLKSLG-----------ESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCL 216
             C +L++             E++ I    S +G             +   L +LE+ +C 
Sbjct: 1009 GCSSLRTFPLISTNIVWLYLENTAIEEIPSTIG-------------NLHRLVKLEMKECT 1055

Query: 217  ELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-------LPNTS-------------LT 256
             LE LP D+ N + L +L +S C SL +FP          L NT+             LT
Sbjct: 1056 GLEVLPTDV-NLSSLMILDLSGCSSLRTFPLISTRIECLYLQNTAIEEVPCCIEDFTRLT 1114

Query: 257  SLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPL 316
             L++  C+ L ++   I + T L+    + C  ++      L    +   + D  + +PL
Sbjct: 1115 VLMMYCCQRLKTISPNIFRLTRLELADFTDCRGVIK----ALSDATVVATMEDHVSCVPL 1170

Query: 317  SQ-----WELHKLKHL 327
            S+     W+  KL HL
Sbjct: 1171 SENIEYIWD--KLYHL 1184

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|P26337|ESA8C_TRYEQ Putative adenylate cyclase regulatory protein OS=Trypanosoma equiperdum GN=ESAG8C PE=2 SV=1

 Score = 51.2 bits (121), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 69/236 (29%), Positives = 108/236 (45%), Gaps = 13/236 (5%)

Query: 89  LEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSS 148
           L+ L +SSC   ++        +L++L +  C N    L+ L   K   L  L++ GC  
Sbjct: 256 LKVLRYSSCHEITDLTAIGGMRSLEKLSLSGCWNVTKGLEELC--KFSNLRELDISGCLV 313

Query: 149 LFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCD--SVVGPEGESSLENMTSSHTLE 206
           L S  + +    L+ L + NC N K L    ++ N D  ++ G  G SSL  +  ++   
Sbjct: 314 LGSAVVLKNLINLKVLSVSNCKNFKDLNGLERLVNLDKLNLSGCHGVSSLGFV--ANLSN 371

Query: 207 LRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTS-LTSLLISECE 264
           L+EL+I  C  L           DLN L +     ++SF   G + N S +  L +S CE
Sbjct: 372 LKELDISGCESLVCFD----GLQDLNNLEVLYLRDVKSFTNVGAIKNLSKMRELDLSGCE 427

Query: 265 NLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWE 320
            + SL   +     L++LS+ GC  +MSF       +L  L + +C NL  LS  E
Sbjct: 428 RITSLS-GLETLKGLEELSLEGCGEIMSFDPIWSLHHLRVLYVSECGNLEDLSGLE 482

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma equiperdum (taxid: 5694)

>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 59/233 (25%), Positives = 100/233 (42%), Gaps = 41/233 (17%)

Query: 74  CPDLEVLLHRMAYTSLEYL------EFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELIL 127
           CP++E L+  +  +SL+Y       E       + +   ++P    RL    C      L
Sbjct: 551 CPNVEALV--LNISSLDYALPSFIAEMKKLKVLTIANHGFYPA---RLSNFSC------L 599

Query: 128 KVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSV 187
             L + K +  E + V    +L  +P  QL  +L+ L    C    S GE     + + +
Sbjct: 600 SSLPNLKRIRFEKVSV----TLLDIPQLQL-GSLKKLSFFMC----SFGEV--FYDTEDI 648

Query: 188 VGPEGESSLENMTSSHTLELRELEIW-------------DCLELEFLPEDMHNFTDLNLL 234
              +  S+L+ +   +  +L EL  W             +C +L  LPE + N + L +L
Sbjct: 649 DVSKALSNLQEIDIDYCYDLDELPYWIPEVVSLKTLSITNCNKLSQLPEAIGNLSRLEVL 708

Query: 235 SISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGC 287
            + +C +L   PE     ++L SL IS C  L  LP +I K   L+++S+  C
Sbjct: 709 RMCSCMNLSELPEATERLSNLRSLDISHCLGLRKLPQEIGKLQKLENISMRKC 761

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 37/211 (17%)

Query: 103 SKQDY----FPTTLKRLKICDCTNAELI---------LKVLMDQKGLALESLEVDGCSSL 149
           S  DY    F + +K+LK+   TN             L  L + K + LE + +    +L
Sbjct: 556 SSSDYALPSFISGMKKLKVLTITNHGFYPARLSNFSCLSSLPNLKRIRLEKVSI----TL 611

Query: 150 FSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRE 209
             +P  QL ++L+ L +V C    S GE     + + +V     S L+ +   +  +L E
Sbjct: 612 LDIPQLQL-SSLKKLSLVMC----SFGEV--FYDTEDIVVSNALSKLQEIDIDYCYDLDE 664

Query: 210 LEIW-------------DCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLT 256
           L  W             +C +L  LPE + N + L +L + +  +L   PE     ++L 
Sbjct: 665 LPYWISEIVSLKTLSITNCNKLSQLPEAIGNLSRLEVLRLCSSMNLSELPEATEGLSNLR 724

Query: 257 SLLISECENLMSLPHQIHKATSLQDLSVSGC 287
            L IS C  L  LP +I K  +L+ +S+  C
Sbjct: 725 FLDISHCLGLRKLPQEIGKLQNLKKISMRKC 755

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|P23799|ESAG8_TRYBB Putative adenylate cyclase regulatory protein OS=Trypanosoma brucei brucei GN=ESAG8 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 67/233 (28%), Positives = 107/233 (45%), Gaps = 13/233 (5%)

Query: 89  LEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSS 148
           L+ L+ SSC   ++        +L++L +  C N    L+ L   K   L  L++ GC  
Sbjct: 256 LKMLDISSCHEITDLTAIGGVRSLEKLSLSGCWNVTKGLEELC--KFSNLRELDISGCLV 313

Query: 149 LFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCD--SVVGPEGESSLENMTSSHTLE 206
           L S  + +    L+ L + NC N K L    ++ N +  ++ G  G SSL  +  ++   
Sbjct: 314 LGSAVVLKNLINLKVLSVSNCKNFKDLNGLERLVNLEKLNLSGCHGVSSLGFV--ANLSN 371

Query: 207 LRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTS-LTSLLISECE 264
           L+EL+I  C  L           DLN L +     ++SF   G + N S +  L +S CE
Sbjct: 372 LKELDISGCESLVCFD----GLQDLNNLEVLYLRDVKSFTNVGAIKNLSKMRELDLSGCE 427

Query: 265 NLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLS 317
            + SL   +     L++LS+ GC  +MSF       +L  L + +C NL  LS
Sbjct: 428 RITSLSG-LETLKGLEELSLEGCGEIMSFDPIWSLYHLRVLYVSECGNLEDLS 479

May be involved in the postranscriptional regulation of genes in VSG expression sites.

Trypanosoma brucei brucei (taxid: 5702)

>sp|Q7XA42|RGA1_SOLBU Putative disease resistance protein RGA1 OS=Solanum bulbocastanum GN=RGA1 PE=2 SV=2

 Score = 47.8 bits (112), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 62/215 (28%), Positives = 98/215 (45%), Gaps = 12/215 (5%)

Query: 75  PDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQK 134
           P LE L        +EY+E        N     FP+ L++L I D +N + +LK+  +++
Sbjct: 749 PCLESLELHTGSADVEYVE-------DNVHPGRFPS-LRKLVIWDFSNLKGLLKMEGEKQ 800

Query: 135 GLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGES 194
              LE +    C  +F +P      TL+ + + +   L+S+     + + D     E  S
Sbjct: 801 FPVLEEMTFYWCP-MFVIPTLSSVKTLKVI-VTDATVLRSISNLRALTSLDISDNVEATS 858

Query: 195 SLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPN-T 253
             E M  S    L+ L+I     L+ LP  + +   L  L    C +LES PE G+   T
Sbjct: 859 LPEEMFKS-LANLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLT 917

Query: 254 SLTSLLISECENLMSLPHQIHKATSLQDLSVSGCP 288
           SLT L +S C  L  LP  +   T+L  L+++ CP
Sbjct: 918 SLTELSVSNCMMLKCLPEGLQHLTALTTLTITQCP 952

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
147772086	1445	hypothetical protein VITISV_018142 [Viti	0.865	0.204	0.406	1e-43
359494648	1340	PREDICTED: putative disease resistance p	0.865	0.220	0.406	1e-43
225436551	1427	PREDICTED: putative disease resistance p	0.862	0.206	0.375	3e-37
147767435	1486	hypothetical protein VITISV_003329 [Viti	0.821	0.188	0.368	2e-36
147860511	1406	hypothetical protein VITISV_014536 [Viti	0.821	0.199	0.368	4e-36
359495026	2204	PREDICTED: uncharacterized protein LOC10	0.821	0.127	0.365	5e-36
359495024	1390	PREDICTED: putative disease resistance p	0.821	0.201	0.365	3e-35
147846228	1372	hypothetical protein VITISV_006043 [Viti	0.653	0.162	0.433	6e-34
359487176	1308	PREDICTED: putative disease resistance R	0.759	0.198	0.361	2e-33
224059584	1418	cc-nbs-lrr resistance protein [Populus t	0.800	0.192	0.362	2e-33

>gi|147772086|emb|CAN60242.1| hypothetical protein VITISV_018142 [Vitis vinifera]

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/317 (40%), Positives = 180/317 (56%), Gaps = 22/317 (6%)

Query: 41   TLESLEIDNLSSLASFLRSELAATTV---KQLKINKCPDLEVLLHRM-AYTSLEYLEFSS 96
             LE L+I +   L + L +E+    +   K+LKI+ CP LE L   + +  SL  L+   
Sbjct: 1064 ALEELQISHFCRLTT-LSNEIGLQNLPYLKRLKISACPCLEELPQNLHSLVSLIELKVWK 1122

Query: 97   CLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLM-----DQKGLA---LESLEVDGCSS 148
            C    +  +  FP+ L+ L+I DC   E + + +M     ++K      LE   ++GCS+
Sbjct: 1123 CPRLVSFPESGFPSMLRILEIKDCEPLESLPEWIMHNNDGNKKNTMSHLLEYFVIEGCST 1182

Query: 149  LFSLPINQLPATLRHLRIVNCMNLKSLGESS------KIRNCDSVVGPEGESSLENMTSS 202
            L  LP  +LP+TL+ L I NCMNL SL E        KI  C  V  P+G   L  + SS
Sbjct: 1183 LKCLPRGKLPSTLKKLEIQNCMNLDSLPEDMTSVQFLKISACSIVSFPKG--GLHTVPSS 1240

Query: 203  HTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISE 262
            + ++L++L I  C++LE LPE +HN   L+ L I+ CP L SFP  GLP T L +L IS 
Sbjct: 1241 NFMKLKQLIINKCMKLESLPEGLHNLMYLDHLEIAECPLLFSFPGPGLPTTKLRTLKISN 1300

Query: 263  CENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELH 322
            C N  SLP++I+  TSLQ+L + GC SL S P GGLP +LI L I+DC+NL P   W LH
Sbjct: 1301 CINFKSLPNRIYNLTSLQELCIDGCCSLASLPEGGLPNSLILLSILDCKNLKPSYDWGLH 1360

Query: 323  KLKHLNKYTILGGLPVL 339
            +L  LN ++  GG P L
Sbjct: 1361 RLTSLNHFS-FGGCPDL 1376

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494648|ref|XP_002263541.2| PREDICTED: putative disease resistance protein At3g14460 [Vitis vinifera]

 Score =  183 bits (464), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 129/317 (40%), Positives = 180/317 (56%), Gaps = 22/317 (6%)

Query: 41   TLESLEIDNLSSLASFLRSELAATTV---KQLKINKCPDLEVLLHRM-AYTSLEYLEFSS 96
             LE L+I +   L + L +E+    +   K+LKI+ CP LE L   + +  SL  L+   
Sbjct: 959  ALEELQISHFCRLTT-LSNEIGLQNLPYLKRLKISACPCLEELPQNLHSLVSLIELKVWK 1017

Query: 97   CLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLM-----DQKGLA---LESLEVDGCSS 148
            C    +  +  FP+ L+ L+I DC   E + + +M     ++K      LE   ++GCS+
Sbjct: 1018 CPRLVSFPESGFPSMLRILEIKDCEPLESLPEWIMHNNDGNKKNTMSHLLEYFVIEGCST 1077

Query: 149  LFSLPINQLPATLRHLRIVNCMNLKSLGESS------KIRNCDSVVGPEGESSLENMTSS 202
            L  LP  +LP+TL+ L I NCMNL SL E        KI  C  V  P+G   L  + SS
Sbjct: 1078 LKCLPRGKLPSTLKKLEIQNCMNLDSLPEDMTSVQFLKISACSIVSFPKG--GLHTVPSS 1135

Query: 203  HTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISE 262
            + ++L++L I  C++LE LPE +HN   L+ L I+ CP L SFP  GLP T L +L IS 
Sbjct: 1136 NFMKLKQLIINKCMKLESLPEGLHNLMYLDHLEIAECPLLFSFPGPGLPTTKLRTLKISN 1195

Query: 263  CENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELH 322
            C N  SLP++I+  TSLQ+L + GC SL S P GGLP +LI L I+DC+NL P   W LH
Sbjct: 1196 CINFKSLPNRIYNLTSLQELCIDGCCSLASLPEGGLPNSLILLSILDCKNLKPSYDWGLH 1255

Query: 323  KLKHLNKYTILGGLPVL 339
            +L  LN ++  GG P L
Sbjct: 1256 RLTSLNHFS-FGGCPDL 1271

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225436551|ref|XP_002274375.1| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  162 bits (409), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 127/338 (37%), Positives = 183/338 (54%), Gaps = 44/338 (13%)

Query: 41   TLESLEIDNLSSLASFLRSELAA-TTVKQLKINKCPDLEVLLHRMAY---TSLEYLEFSS 96
            +L SL I  +S+L            ++++LKI  C +L      ++    TSL+ L   +
Sbjct: 996  SLTSLHISGISNLVCLPEGMFKNLASLEELKIVDCSELMAFPREVSLQLLTSLKRLLIWN 1055

Query: 97   CLFFS---NSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGL----------------- 136
            C   S   + +++  P+ L  L+I DC N E + K L + + L                 
Sbjct: 1056 CPRISSLPDGEEEELPSELGTLEIMDCNNIERLQKGLCNLRNLEDLRIVNVPKVESLPEG 1115

Query: 137  -----ALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPE 191
                 +LESL ++GC SL SL    LPA L+ L I  C NLK+L   + I +  S+   E
Sbjct: 1116 LHDLTSLESLIIEGCPSLTSLAEMGLPAVLKRLVIRKCGNLKAL--PAMILHTLSLEHLE 1173

Query: 192  --GESSLENMTSSHT-----LELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLES 244
              G SSL++  SS +     + L+E  I DC+ LE LPED+H+   L+ L I  CP L S
Sbjct: 1174 ISGCSSLKSFPSSGSGLPANVMLKEFVIKDCVNLESLPEDLHSLIYLDRLIIERCPCLVS 1233

Query: 245  FPEGGLPNTSLTSLL---ISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPN 301
            FP  G+ NT++T+L    I +C NL++LPH +HK +SLQ L ++GCP ++S P GG+P N
Sbjct: 1234 FP--GMTNTTITNLRTMSIVQCGNLVALPHSMHKLSSLQHLRITGCPRIVSLPEGGMPMN 1291

Query: 302  LISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLPVL 339
            L +L I+DCENL P  +W LHKL  L  +T LGG P L
Sbjct: 1292 LKTLTILDCENLKPQFEWGLHKLMSLCHFT-LGGCPGL 1328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147767435|emb|CAN66722.1| hypothetical protein VITISV_003329 [Vitis vinifera]

 Score =  159 bits (401), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 115/312 (36%), Positives = 158/312 (50%), Gaps = 32/312 (10%)

Query: 35   GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEF 94
            G+++   LE L + +   L SF    L    ++ L + KC  L++L H      LEYLE 
Sbjct: 1108 GLQSLTCLEELSLQSCPKLESFPEMGLP-LMLRSLVLQKCKTLKLLPHNYNSGFLEYLEI 1166

Query: 95   SSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLA------LESLEVDGCSS 148
              C    +  +   P +LK+LKI DC N + + + +M    +       LE LE+  CSS
Sbjct: 1167 ERCPCLISFPEGELPPSLKQLKIRDCANLQTLPEGMMHHNSMVSTYSCCLEVLEIRKCSS 1226

Query: 149  LFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELR 208
            L SLP  +LP+TL+ L I +C   + + E                     M  S+T  L 
Sbjct: 1227 LPSLPTGELPSTLKRLEIWDCRQFQPISE--------------------QMLHSNT-ALE 1265

Query: 209  ELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMS 268
             L I +   ++ LP  +H+ T    L I  C  L SFPE GLP  +L  L I+ CENL S
Sbjct: 1266 HLSISNYPNMKILPGFLHSLT---YLYIYGCQGLVSFPERGLPTPNLRDLYINNCENLKS 1322

Query: 269  LPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENL-IPLSQWELHKLKHL 327
            LPHQ+   +SLQ+L++  C  L SFP  GL PNL SL I DC NL +PLS+W LH+L  L
Sbjct: 1323 LPHQMQNLSSLQELNIRNCQGLESFPECGLAPNLTSLSIRDCVNLKVPLSEWGLHRLTSL 1382

Query: 328  NKYTILGGLPVL 339
            +   I G  P L
Sbjct: 1383 SSLYISGVCPSL 1394

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147860511|emb|CAN79726.1| hypothetical protein VITISV_014536 [Vitis vinifera]

 Score =  158 bits (399), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 115/312 (36%), Positives = 156/312 (50%), Gaps = 32/312 (10%)

Query: 35   GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEF 94
            G++    LE L + +   L SF    L    ++ L + KC  L++L H      LEYLE 
Sbjct: 1040 GLQRLTCLEELSLQSCPKLESFPEMGLPPM-LRSLVLQKCNTLKLLPHNYNSGFLEYLEI 1098

Query: 95   SSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLA------LESLEVDGCSS 148
              C    +  +   P +LK+LKI DC N + + + +M    +       LE LE+  CSS
Sbjct: 1099 EHCPCLISFPEGELPASLKQLKIKDCANLQTLPEGMMHHNSMVSNNSCCLEVLEIRKCSS 1158

Query: 149  LFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELR 208
            L SLP  +LP+TL+ L I +C   + + E                     M  S+T  L 
Sbjct: 1159 LPSLPTGELPSTLKRLEIWDCRQFQPISEK--------------------MLHSNT-ALE 1197

Query: 209  ELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMS 268
             L I +   ++ LP  +H+ T    L I  C  L SFPE GLP  +L  L I+ CENL S
Sbjct: 1198 HLSISNYPNMKILPGXLHSLT---YLYIYGCQGLVSFPERGLPTPNLRDLYINNCENLKS 1254

Query: 269  LPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENL-IPLSQWELHKLKHL 327
            LPHQ+    SLQ+L++  C  L SFP  GL PNL SL I DC NL +PLS+W LH+L  L
Sbjct: 1255 LPHQMQNLLSLQELNIRNCQGLESFPECGLAPNLTSLSIRDCVNLKVPLSEWGLHRLTSL 1314

Query: 328  NKYTILGGLPVL 339
            +   I G  P L
Sbjct: 1315 SSLYISGVCPSL 1326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495026|ref|XP_003634900.1| PREDICTED: uncharacterized protein LOC100854556 [Vitis vinifera]

 Score =  157 bits (398), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 157/312 (50%), Gaps = 32/312 (10%)

Query: 35   GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEF 94
            G+++   LE L + +   L SF    L    ++ L + KC  L++L H      LEYLE 
Sbjct: 1039 GLQSLTCLEELSLQSCPKLESFPEMGLPPM-LRSLVLQKCNTLKLLPHNYNSGFLEYLEI 1097

Query: 95   SSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLA------LESLEVDGCSS 148
              C    +  +   P +LK+LKI DC N + + + +M    +       LE LE+  CSS
Sbjct: 1098 EHCPCLISFPEGELPASLKQLKIKDCANLQTLPEGMMHHNSMVSNNSCCLEVLEIRKCSS 1157

Query: 149  LFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELR 208
            L SLP  +LP+TL+ L I +C   + + E                     M  S+T  L 
Sbjct: 1158 LPSLPTGELPSTLKRLEIWDCRQFQPISE--------------------KMLHSNT-ALE 1196

Query: 209  ELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMS 268
             L I +   ++ LP  +H+ T    L +  C  L SFPE GLP  +L  L I+ CENL S
Sbjct: 1197 HLSISNYPNMKILPGFLHSLT---YLYMYGCQGLVSFPERGLPTPNLRDLYINNCENLKS 1253

Query: 269  LPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENL-IPLSQWELHKLKHL 327
            LPHQ+    SLQ+L++  C  L SFP  GL PNL SL I DC NL +PLS+W LH+L  L
Sbjct: 1254 LPHQMQNLLSLQELNIRNCQGLESFPECGLAPNLTSLSIRDCVNLKVPLSEWGLHRLTSL 1313

Query: 328  NKYTILGGLPVL 339
            +   I G  P L
Sbjct: 1314 SSLYISGVCPSL 1325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495024|ref|XP_002267933.2| PREDICTED: putative disease resistance protein At3g14460-like [Vitis vinifera]

 Score =  155 bits (392), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 114/312 (36%), Positives = 155/312 (49%), Gaps = 32/312 (10%)

Query: 35   GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEF 94
            G++    LE L + +   L SF    L    ++ L + KC  L++L H      LEYLE 
Sbjct: 1040 GLQRLTCLEELSLQSCPKLESFPEMGLPPM-LRSLVLQKCNTLKLLPHNYNSGFLEYLEI 1098

Query: 95   SSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLA------LESLEVDGCSS 148
              C    +  +   P +LK+LKI DC N + + + +     +       LE LE+  CSS
Sbjct: 1099 EHCPCLISFPEGELPASLKQLKIKDCANLQTLPEGMTHHNSMVSNNSCCLEVLEIRKCSS 1158

Query: 149  LFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELR 208
            L SLP  +LP+TL+ L I +C   + + E                     M  S+T  L 
Sbjct: 1159 LPSLPTGELPSTLKRLEIWDCRQFQPISEK--------------------MLHSNT-ALE 1197

Query: 209  ELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMS 268
             L I +   ++ LP  +H+ T    L I  C  L SFPE GLP  +L  L I+ CENL S
Sbjct: 1198 HLSISNYPNMKILPGFLHSLT---YLYIYGCQGLVSFPERGLPTPNLRDLYINNCENLKS 1254

Query: 269  LPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENL-IPLSQWELHKLKHL 327
            LPHQ+    SLQ+L++  C  L SFP  GL PNL SL I DC NL +PLS+W LH+L  L
Sbjct: 1255 LPHQMQNLLSLQELNIRNCQGLESFPECGLAPNLTSLSIRDCVNLKVPLSEWGLHRLTSL 1314

Query: 328  NKYTILGGLPVL 339
            +   I G  P L
Sbjct: 1315 SSLYISGVCPSL 1326

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147846228|emb|CAN81660.1| hypothetical protein VITISV_006043 [Vitis vinifera]

 Score =  150 bits (380), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 107/247 (43%), Positives = 148/247 (59%), Gaps = 24/247 (9%)

Query: 110  TTLKRLKICDCTN-------AELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLR 162
             +L+ LKI DC+         E + + L D    +LESL ++GC SL SL    LPA L+
Sbjct: 1020 ASLEELKIVDCSELMAFPREVESLPEGLHDLT--SLESLIIEGCPSLTSLAEMGLPAVLK 1077

Query: 163  HLRIVNCMNLKSLGESSKIRNCDSVVGPE--GESSLENMTSSHT-----LELRELEIWDC 215
             L I  C NLK+L   + I +  S+   E  G SSL++  SS +     + L+E  I DC
Sbjct: 1078 RLVIRKCGNLKAL--PAMILHTLSLEHLEISGCSSLKSFPSSGSGLPANVMLKEFVIKDC 1135

Query: 216  LELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLL---ISECENLMSLPHQ 272
            + LE LPED+++   L+ L I  CP L SFP  G+ NT++T+L    I +C NL++LPH 
Sbjct: 1136 VNLESLPEDLYSLIYLDRLIIXRCPCLVSFP--GMTNTTITNLRTMSIVQCGNLVALPHS 1193

Query: 273  IHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTI 332
            +HK +SLQ L ++GCP ++S P GG+P NL +L I+DCENL P  +W LHKL  L  +T 
Sbjct: 1194 MHKLSSLQHLRITGCPRIVSLPEGGMPMNLKTLTILDCENLKPQFEWGLHKLMSLCHFT- 1252

Query: 333  LGGLPVL 339
            LGG P L
Sbjct: 1253 LGGCPGL 1259

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487176|ref|XP_003633526.1| PREDICTED: putative disease resistance RPP13-like protein 1-like [Vitis vinifera]

 Score =  149 bits (376), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 111/307 (36%), Positives = 153/307 (49%), Gaps = 48/307 (15%)

Query: 65   TVKQLKINKCPDLEVLLHRMAY---------TSLEYLEFSSCLFFSNSKQDYFPTTLKRL 115
            ++ +L+I +CP L+  L R+AY         T LE L   SC    +  +   P+ L+ L
Sbjct: 902  SLTELEIFECPKLKAALPRLAYRLPNGLQSLTCLEELSLQSCPKLESFPEMGLPSMLRSL 961

Query: 116  KICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSL 175
             +  C   +L+     +     LE LE++ C  L S P  +LP +L+ L+I +C NL++L
Sbjct: 962  VLQKCKTLKLLPH---NYNSGFLEYLEIEHCPCLISFPEGELPHSLKQLKIKDCANLQTL 1018

Query: 176  GESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDM-HNFTDLNLL 234
             E     N          S ++N+   H   L+ LEIWDC + + + E M H+ T L  L
Sbjct: 1019 PEGMMHHN----------SIVKNV---HPSTLKRLEIWDCGQFQPISEQMLHSNTALEQL 1065

Query: 235  SISN---------------------CPSLESFPEGGLPNTSLTSLLISECENLMSLPHQI 273
            SISN                     C  L SFPE GLP  +L  L I+ CENL SL HQ+
Sbjct: 1066 SISNYPNMKILPGFLHSLTYLYIYGCQGLVSFPERGLPTPNLRDLYINNCENLKSLSHQM 1125

Query: 274  HKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENL-IPLSQWELHKLKHLNKYTI 332
               +SLQ L++  C  L SFP  GL PNL SL I DC  L +PLS+W LH+L  L+   I
Sbjct: 1126 QNLSSLQGLNIRNCQGLESFPECGLAPNLTSLSIRDCVTLKVPLSEWGLHRLTSLSSLYI 1185

Query: 333  LGGLPVL 339
             G  P L
Sbjct: 1186 SGVCPSL 1192

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224059584|ref|XP_002299919.1| cc-nbs-lrr resistance protein [Populus trichocarpa] gi|222847177|gb|EEE84724.1| cc-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  149 bits (375), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 109/301 (36%), Positives = 153/301 (50%), Gaps = 28/301 (9%)

Query: 41   TLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFF 100
            +LE L I++  +L S   + L  ++++ L +  C  L  L   M+   LE LE   C   
Sbjct: 1034 SLEDLCIESCPNLVSIPEAGLL-SSLRHLVLRDCKALRSLPDGMSNCPLEDLEIEECPSL 1092

Query: 101  SNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKG-----LALESLEVDGCSSLFSLPIN 155
                    P TLK LKI  CT  + + + LM  K         E LE+ GC SL S P  
Sbjct: 1093 ECFPGRMLPATLKGLKIRYCTELKSLPEDLMHNKNGPGTLCHFEHLEIIGCPSLKSFPDG 1152

Query: 156  QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDC 215
            +LP  L+ L+I +C  LK L E                     M     + L  L I DC
Sbjct: 1153 KLPTRLKTLKIWDCSQLKPLSE---------------------MMLHDDMSLEYLAISDC 1191

Query: 216  LELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHK 275
              L   PE + +F  L+ L++SNC +L+ FP  G P  +L +L I  C+NL SLP+++ K
Sbjct: 1192 EALSSFPECLSSFKHLSELNLSNCSALKLFPGVGFPPANLRTLTIYNCKNLKSLPNEMRK 1251

Query: 276  ATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIP-LSQWELHKLKHLNKYTILG 334
             TSLQ+L++  CP+L SFP+G +PP+L SL I DC+NL   LS+W L  L  L  ++I G
Sbjct: 1252 LTSLQELTICSCPALKSFPNGDMPPHLTSLEIWDCDNLDGCLSEWNLQSLTCLRDFSIAG 1311

Query: 335  G 335
            G
Sbjct: 1312 G 1312

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	341
TAIR|locus:2091662	1424	AT3G14460 [Arabidopsis thalian	0.706	0.169	0.334	1.1e-23
TAIR|locus:2163426	1187	TAO1 "target of AVRB operation	0.709	0.203	0.316	9.8e-17
TAIR|locus:2053405	1215	AT2G14080 [Arabidopsis thalian	0.627	0.176	0.330	3.2e-15
TAIR|locus:2147992	1189	AT5G11250 [Arabidopsis thalian	0.709	0.203	0.305	1.4e-13
TAIR|locus:2094498	1981	AT3G25510 [Arabidopsis thalian	0.794	0.136	0.280	1.5e-13
UNIPROTKB|O48647	1802	O48647 "XA1" [Oryza sativa (ta	0.818	0.154	0.295	2e-12
TAIR|locus:2098110	1219	AT3G44670 [Arabidopsis thalian	0.571	0.159	0.323	5.3e-12
TAIR|locus:2076043	1194	RPP1 "recognition of peronospo	0.504	0.144	0.323	1e-10
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.645	0.170	0.287	5.3e-10
TAIR|locus:2100182	1007	AT3G44400 [Arabidopsis thalian	0.577	0.195	0.305	2.4e-09

TAIR|locus:2091662 AT3G14460 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 86/257 (33%), Positives = 125/257 (48%)

Query:    87 TSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGC 146
             T +EYL+ +     S+  +   P  L+ L I  C     + + L +     L  L +  C
Sbjct:  1073 TDMEYLKVTD---ISHLME--LPQNLQSLHIDSCDGLTSLPENLTESYP-NLHELLIIAC 1126

Query:   147 SSLFSLPINQLPATLRHLRIVNCMNL---KSLGESSKIRNCDSVVGPEGESSLENMTSSH 203
              SL S P +  P TL+ L I +C  L   +SL  +      + +      S+L N   S 
Sbjct:  1127 HSLESFPGSHPPTTLKTLYIRDCKKLNFTESLQPTRSYSQLEYLFIGSSCSNLVNFPLSL 1186

Query:   204 TLELRELEIWDCLELEFLPEDMH-NFTD----LNLLSISNCPSLESFPEGGLPNTSLTSL 258
               +LR L I DC E  F    +H    D    L  L I +CP+LE+FP+GGLP   L+S+
Sbjct:  1187 FPKLRSLSIRDC-E-SFKTFSIHAGLGDDRIALESLEIRDCPNLETFPQGGLPTPKLSSM 1244

Query:   259 LISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQ 318
             L+S C+ L +LP ++   TSL  L +  CP + + P GG P NL +L I  C+ L P  +
Sbjct:  1245 LLSNCKKLQALPEKLFGLTSLLSLFIIKCPEIETIPGGGFPSNLRTLCISLCDKLTPRIE 1304

Query:   319 WELHKLKHLNKYTILGG 335
             W L  L++L    I GG
Sbjct:  1305 WGLRDLENLRNLEIDGG 1321

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2163426 TAO1 "target of AVRB operation1" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 9.8e-17, P = 9.8e-17
 Identities = 81/256 (31%), Positives = 122/256 (47%)

Query:    66 VKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYF-PTTLKRLKICDCTNAE 124
             +K + ++ C +L+ L      T+L+ L   +CL            T L  L + DC++  
Sbjct:   659 LKWMDLSFCVNLKELPDFSTATNLQELRLINCLSLVELPSSIGNATNLLELDLIDCSS-- 716

Query:   125 LILKVLMDQKGLA-LESLEVDGCSSLFSLPINQLPAT-LRHLRIVNCMNLKSLGES-SKI 181
              ++K+      L  L+ L ++ CSSL  LP +    T L+ L +  C +L  +  S   I
Sbjct:   717 -LVKLPSSIGNLTNLKKLFLNRCSSLVKLPSSFGNVTSLKELNLSGCSSLLEIPSSIGNI 775

Query:   182 RNCDSVVGPEGESSLENMTSS--HTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNC 239
              N   V   +G SSL  + SS  +   L+EL + +C  L   P  M N T L  L++S C
Sbjct:   776 VNLKKVYA-DGCSSLVQLPSSIGNNTNLKELHLLNCSSLMECPSSMLNLTRLEDLNLSGC 834

Query:   240 PSLESFPE-GGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGL 298
              SL   P  G + N  L SL +S+C +LM LP  I  AT+L  L + GC +L+  P    
Sbjct:   835 LSLVKLPSIGNVIN--LQSLYLSDCSSLMELPFTIENATNLDTLYLDGCSNLLELPSSIW 892

Query:   299 P-PNLISLGIIDCENL 313
                NL SL +  C +L
Sbjct:   893 NITNLQSLYLNGCSSL 908

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=IMP

TAIR|locus:2053405 AT2G14080 [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 74/224 (33%), Positives = 112/224 (50%)

Query:   112 LKRLKICDCTNAELILKVLMDQKGLA-LESLEVDGCSSLFSLPINQLPAT-LRHLRIVNC 169
             L+ LK  D  +++  LK L D      LE L ++GCSSL  LP +   AT L  L +  C
Sbjct:   673 LRNLKRMDLFSSKN-LKELPDLSSATNLEVLNLNGCSSLVELPFSIGNATKLLKLELSGC 731

Query:   170 MNLKSLGES-SKIRNCDSVVGPEGESSLENMTS-SHTLELRELEIWDCLELEFLPEDMHN 227
              +L  L  S     N  ++     E+ +E  +S  +   L+EL++  C  L+ LP  + N
Sbjct:   732 SSLLELPSSIGNAINLQTIDFSHCENLVELPSSIGNATNLKELDLSCCSSLKELPSSIGN 791

Query:   228 FTDLNLLSISNCPSLESFPEGGLPN-TSLTSLLISECENLMSLPHQIHKATSLQDLSVSG 286
              T+L  L +  C SL+  P   + N T+L  L ++ C +L+ LP  I  A +L+ L ++G
Sbjct:   792 CTNLKKLHLICCSSLKELPSS-IGNCTNLKELHLTCCSSLIKLPSSIGNAINLEKLILAG 850

Query:   287 CPSLMSFPHG-GLPPNL--ISLGIIDCENLIPLSQWELHKLKHL 327
             C SL+  P   G   NL  ++LG + C   +P     LHKL  L
Sbjct:   851 CESLVELPSFIGKATNLKILNLGYLSCLVELPSFIGNLHKLSEL 894

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2147992 AT5G11250 [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 80/262 (30%), Positives = 122/262 (46%)

Query:    92 LEFSSCLFFSNSKQDYFPTTLK---RLKICDCTNAELILKVLMD-QKGLALESLEVDGCS 147
             +EF   L  ++SK D     +K    L+  D + + + LK L D    + L  L +  CS
Sbjct:   652 VEFLIELNLTHSKLDMLWEGVKPLHNLRQMDLSYS-VNLKELPDLSTAINLRKLILSNCS 710

Query:   148 SLFSLP--INQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSS--H 203
             SL  LP  I      L  L +  C +L  L       N   ++     S+L  + SS  +
Sbjct:   711 SLIKLPSCIGNA-INLEDLDLNGCSSLVELPSFGDAINLQKLL-LRYCSNLVELPSSIGN 768

Query:   204 TLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNT-SLTSLLISE 262
              + LREL+++ C  L  LP  + N  +L +L ++ C +L   P   + N  +L  L +  
Sbjct:   769 AINLRELDLYYCSSLIRLPSSIGNAINLLILDLNGCSNLLELPSS-IGNAINLQKLDLRR 827

Query:   263 CENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLI--PLSQW 319
             C  L+ LP  I  A +LQ+L +  C SL+  P   G   NL+ + + +C NL+  PLS  
Sbjct:   828 CAKLLELPSSIGNAINLQNLLLDDCSSLLELPSSIGNATNLVYMNLSNCSNLVELPLSIG 887

Query:   320 ELHKLKHLNKYTILGGLPVLEE 341
              L KL+ L    IL G   LE+
Sbjct:   888 NLQKLQEL----ILKGCSKLED 905

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2094498 AT3G25510 [Arabidopsis thaliana (taxid:3702)]

 Score = 209 (78.6 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 81/289 (28%), Positives = 136/289 (47%)

Query:    49 NLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYT-SLEYLEFSSCLFFSNSKQDY 107
             ++  L SF ++    T ++ L +N+C  L  L   +    +L+ L+   CL         
Sbjct:   723 SILELPSFTKN---VTGLQSLDLNECSSLVELPSSIGNAINLQNLDLG-CLRLLKLPLSI 778

Query:   108 FP-TTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPA-TLRHLR 165
                T LK+  +  C++  L+    M      L++L++  CSSL  LP +   A  L++L 
Sbjct:   779 VKFTNLKKFILNGCSS--LVELPFMGN-ATNLQNLDLGNCSSLVELPSSIGNAINLQNLD 835

Query:   166 IVNCMNLKSLGESSKIRNCDS--VVGPEGESSLENMTSS--HTLELRELEIWDCLELEFL 221
             + NC +L  L   S I N  +  ++     SSL  + +S  H   L  L++  C  L  L
Sbjct:   836 LSNCSSLVKL--PSFIGNATNLEILDLRKCSSLVEIPTSIGHVTNLWRLDLSGCSSLVEL 893

Query:   222 PEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQD 281
             P  + N ++L +L++ NC +L   P      T+L  L +S C +L+ LP  I   T+LQ+
Sbjct:   894 PSSVGNISELQVLNLHNCSNLVKLPSSFGHATNLWRLDLSGCSSLVELPSSIGNITNLQE 953

Query:   282 LSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPL-SQWELHKLKHLN 328
             L++  C +L+  P   G    L +L +  C+ L  L S   L  L+ L+
Sbjct:   954 LNLCNCSNLVKLPSSIGNLHLLFTLSLARCQKLEALPSNINLKSLERLD 1002

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

UNIPROTKB|O48647 O48647 "XA1" [Oryza sativa (taxid:4530)]

 Score = 199 (75.1 bits), Expect = 2.0e-12, P = 2.0e-12
 Identities = 92/311 (29%), Positives = 130/311 (41%)

Query:    42 LESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFF 100
             L  L +   S+L S  L S    T++++LKI  C  L  L       +L  L+   CL  
Sbjct:  1504 LRKLHVLGNSNLVSLQLHS---CTSLEELKIQSCESLSSLDGLQLLGNLRLLQAHRCL-- 1558

Query:   101 SNSKQD---YFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQL 157
             S   +D     P +L+ L I + +  E +    +      L+ LEV G +SL SL +   
Sbjct:  1559 SGHGEDGRCILPQSLEELFISEYS-LETLQPCFLTNL-TCLKQLEVSGTTSLKSLELQSC 1616

Query:   158 PATLRHLRIVNCMNLKSL-G-------ESSKIRNCDSVVGPEGESSLENMTSSHTLELRE 209
              A L HL+I  C +L +L G          K+  C  +    G SS +       LE  +
Sbjct:  1617 TA-LEHLKIQGCASLATLEGLQFLHALRHMKVFRCPGLPPYLGSSSEQGYELCPRLERLD 1675

Query:   210 LEIWDCLELEFLPEDMHNFTDLNLLSISNCPS----LESFPEGGLPN-TSLTSLLISECE 264
             ++    L   F      + T L  L ++ C S    L    E  L   TSL  L    C 
Sbjct:  1676 IDDPSILTTSFCK----HLTSLQRLELNYCGSEVARLTDEQERALQLLTSLQELRFKYCY 1731

Query:   265 NLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKL 324
             NL+ LP  +H   SL+ L +  C S+   P  GLPP+   L II C N   L+Q +   L
Sbjct:  1732 NLIDLPAGLHSLPSLKRLEIRSCRSIARLPEKGLPPSFEELDIIACSN--ELAQ-QCRTL 1788

Query:   325 KHLNKYTILGG 335
                 K  I GG
Sbjct:  1789 ASTLKVKINGG 1799

GO:0006915 "apoptotic process" evidence=IGI

GO:0006952 "defense response" evidence=IGI

TAIR|locus:2098110 AT3G44670 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
 Identities = 69/213 (32%), Positives = 107/213 (50%)

Query:   112 LKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLP--INQLPATLRHLRIVNC 169
             L+ LK  D +N+E + ++        LE L++  CSSL  LP  I +L  +L+ L +  C
Sbjct:   715 LRNLKWMDLSNSEDLKELPNLSTATNLEELKLRDCSSLVELPSSIEKL-TSLQRLYLQRC 773

Query:   170 ---MNLKSLGESSKIRNCDSVVGPEGESSLENMTSS-HTLELRELEIWDCLELEFLPEDM 225
                + L S G ++K+      +  E  SSLE +  S +   L++L + +C  +  LP  +
Sbjct:   774 SSLVELPSFGNATKLEE----LYLENCSSLEKLPPSINANNLQQLSLINCSRVVELPA-I 828

Query:   226 HNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVS 285
              N T+L  L + NC SL   P      T+L  L IS C +L+ LP  I   T+L++  +S
Sbjct:   829 ENATNLQKLDLGNCSSLIELPLSIGTATNLKELNISGCSSLVKLPSSIGDITNLKEFDLS 888

Query:   286 GCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQ 318
              C +L+      LP N I+L  +D  NL   SQ
Sbjct:   889 NCSNLVE-----LPIN-INLKFLDTLNLAGCSQ 915

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0042742 "defense response to bacterium" evidence=ISS

TAIR|locus:2076043 RPP1 "recognition of peronospora parasitica 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
 Identities = 63/195 (32%), Positives = 100/195 (51%)

Query:   112 LKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLP--INQLPATLRHLRIVNC 169
             L+ LK  D + +  + ++        LE L++  CSSL  LP  I +L  +L+ L + NC
Sbjct:   713 LRNLKWMDLSYSSYLKELPNLSTATNLEELKLRNCSSLVELPSSIEKL-TSLQILDLENC 771

Query:   170 MNLKSLG--ESS------KIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFL 221
              +L+ L   E++      K++NC S++    E  L   T+++   L++L I  C  L  L
Sbjct:   772 SSLEKLPAIENATKLRELKLQNCSSLI----ELPLSIGTATN---LKQLNISGCSSLVKL 824

Query:   222 PEDMHNFTDLNLLSISNCPSLESFPE--GGLPNTSLTSLLISECENLMSLPHQIHKATSL 279
             P  + + TDL +  +SNC SL + P   G L N  L  L++  C  L +LP  I+   SL
Sbjct:   825 PSSIGDITDLEVFDLSNCSSLVTLPSSIGNLQN--LCKLIMRGCSKLEALPININ-LKSL 881

Query:   280 QDLSVSGCPSLMSFP 294
               L+++ C  L SFP
Sbjct:   882 DTLNLTDCSQLKSFP 896

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS;TAS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0002239 "response to oomycetes" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

GO:0005789 "endoplasmic reticulum membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009817 "defense response to fungus, incompatible interaction" evidence=IMP;TAS

GO:0030275 "LRR domain binding" evidence=ISS

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 176 (67.0 bits), Expect = 5.3e-10, P = 5.3e-10
 Identities = 67/233 (28%), Positives = 107/233 (45%)

Query:   112 LKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSL-P-INQLPATLRHLRIVNC 169
             L+ LK  D +  + +++V    K   LE L +  C SL  + P I  L   L    + NC
Sbjct:   624 LRNLKKMDLSRCKYLVEVPDLSKATNLEELNLSYCQSLVEVTPSIKNLKG-LSCFYLTNC 682

Query:   170 MNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFT 229
             + LK +     +++ ++V G  G SSL++     +   R L +    ++E LP  +   +
Sbjct:   683 IQLKDIPIGIILKSLETV-GMSGCSSLKHFPEI-SWNTRRLYL-SSTKIEELPSSISRLS 739

Query:   230 DLNLLSISNCPSLESFPE--GGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGC 287
              L  L +S+C  L + P   G L   SL SL +  C  L +LP  +   TSL+ L VSGC
Sbjct:   740 CLVKLDMSDCQRLRTLPSYLGHL--VSLKSLNLDGCRRLENLPDTLQNLTSLETLEVSGC 797

Query:   288 PSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLN--KYTILGGLPV 338
              ++  FP       ++ +     E  IP     L +L+ L+  +   L  LPV
Sbjct:   798 LNVNEFPRVSTSIEVLRISETSIEE-IPARICNLSQLRSLDISENKRLASLPV 849

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2100182 AT3G44400 [Arabidopsis thaliana (taxid:3702)]

 Score = 169 (64.5 bits), Expect = 2.4e-09, P = 2.4e-09
 Identities = 65/213 (30%), Positives = 101/213 (47%)

Query:   138 LESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSK-IRNCD--SVVGPEGES 194
             + SL+  G  ++  LP    P  L  L + +   L+ L E +K +RN     +   E   
Sbjct:   627 IRSLKWFGYQNI-CLPSTFNPEFLVELDM-SSSKLRKLWEGTKQLRNLKWMDLSDSEDLK 684

Query:   195 SLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTS 254
              L N++++  LE  EL++  C  L  LP  +   T L +L + +C SL   P  G   T 
Sbjct:   685 ELPNLSTATNLE--ELKLRRCSSLVELPSSIEKLTSLQILDLHSCSSLVELPSFGNA-TK 741

Query:   255 LTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLI 314
             L  L +  C +L+ LP  I+ A +LQ+LS+  C  ++  P      NL  L + +C +LI
Sbjct:   742 LEKLDLENCSSLVKLPPSIN-ANNLQELSLRNCSRVVELPAIENATNLRELKLQNCSSLI 800

Query:   315 --PLSQW--ELHKLK--HLNKYTILGGLPVLEE 341
               PLS W   + +L+   LN    L  LP L +
Sbjct:   801 ELPLS-WVKRMSRLRVLTLNNCNNLVSLPQLPD 832

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	341
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-04

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 51/210 (24%), Positives = 84/210 (40%), Gaps = 34/210 (16%)

Query: 110 TTLKRLKICDCTN-AELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVN 168
           T L+ LK+ DC++  EL   +    K   LE L++  C +L  LP      +L  L +  
Sbjct: 657 TNLETLKLSDCSSLVELPSSIQYLNK---LEDLDMSRCENLEILPTGINLKSLYRLNLSG 713

Query: 169 CMNLKSLGE-SSKIRNCD----SVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPE 223
           C  LKS  + S+ I   D    ++        LEN+      E++  ++W+ ++      
Sbjct: 714 CSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPL---- 769

Query: 224 DMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLS 283
                           P +           SLT L +S+  +L+ LP  I     L+ L 
Sbjct: 770 ---------------TPLMTMLSP------SLTRLFLSDIPSLVELPSSIQNLHKLEHLE 808

Query: 284 VSGCPSLMSFPHGGLPPNLISLGIIDCENL 313
           +  C +L + P G    +L SL +  C  L
Sbjct: 809 IENCINLETLPTGINLESLESLDLSGCSRL 838

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 47.6 bits (113), Expect = 6e-06
 Identities = 67/280 (23%), Positives = 121/280 (43%), Gaps = 40/280 (14%)

Query: 42  LESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFS 101
           LE+L++ + SSL     S      ++ L +++C +LE+L   +   SL  L  S C    
Sbjct: 659 LETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGC---- 714

Query: 102 NSKQDYFP---TTLKRLKICDCTNAE----LILKVLMDQKGLALESLEVDGCSSLFSLPI 154
            S+   FP   T +  L + +    E    L L+ L +     ++S ++       +  +
Sbjct: 715 -SRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLM 773

Query: 155 NQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWD 214
             L  +L  L + +  +L  L                  SS++N+      +L  LEI +
Sbjct: 774 TMLSPSLTRLFLSDIPSLVEL-----------------PSSIQNLH-----KLEHLEIEN 811

Query: 215 CLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIH 274
           C+ LE LP  + N   L  L +S C  L +FP+    +T+++ L +S    +  +P  I 
Sbjct: 812 CINLETLPTGI-NLESLESLDLSGCSRLRTFPD---ISTNISDLNLSR-TGIEEVPWWIE 866

Query: 275 KATSLQDLSVSGCPSLMSF-PHGGLPPNLISLGIIDCENL 313
           K ++L  L ++GC +L     +     +L ++   DC  L
Sbjct: 867 KFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 29/97 (29%), Positives = 50/97 (51%), Gaps = 1/97 (1%)

Query: 217 ELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKA 276
           +LE L + +H+ T L  + +    +L+  P+  +  T+L +L +S+C +L+ LP  I   
Sbjct: 622 KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMA-TNLETLKLSDCSSLVELPSSIQYL 680

Query: 277 TSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENL 313
             L+DL +S C +L   P G    +L  L +  C  L
Sbjct: 681 NKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRL 717

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	341
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.85
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.81
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.8
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.67
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.55
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.48
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.45
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.44
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.39
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.39
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.35
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.23
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.1
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.06
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.06
KOG4341	483	consensus F-box protein containing LRR [General fu	98.94
KOG4341	483	consensus F-box protein containing LRR [General fu	98.93
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.84
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.69
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.68
PRK15386	426	type III secretion protein GogB; Provisional	98.64
PRK15386	426	type III secretion protein GogB; Provisional	98.58
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.5
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.43
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.42
KOG4237	498	consensus Extracellular matrix protein slit, conta	98.38
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.38
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.27
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.18
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.14
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.08
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.94
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.9
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.81
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.8
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.71
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.69
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.58
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.55
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.53
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.48
PLN03150	623	hypothetical protein; Provisional	97.41
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.39
PLN03150	623	hypothetical protein; Provisional	97.36
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	97.35
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.34
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.31
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.97
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.85
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	96.76
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.65
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.41
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.32
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.23
KOG3864	221	consensus Uncharacterized conserved protein [Funct	95.89
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.25
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	94.94
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.74
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	94.6
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.38
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	93.34
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.25
KOG3864	221	consensus Uncharacterized conserved protein [Funct	93.15
KOG2982	418	consensus Uncharacterized conserved protein [Funct	93.13
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	92.01
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	89.86
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	89.58
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	86.93
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	86.8
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	86.16
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	82.89

>PLN03210 Resistant to P

Probab=99.90  E-value=2.7e-22  Score=208.72  Aligned_cols=285  Identities=26%  Similarity=0.359  Sum_probs=145.6

Q ss_pred             CCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccC-CCCCCCccEE
Q 019416           39 GETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTLKRL  115 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L  115 (341)
                      ..+|++|++.++ .++.+|.....+++|+.|++++++.+..+  +..  +++|+.|++++|..+..+|. +..+++|+.|
T Consensus       610 ~~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~--l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L  686 (1153)
T PLN03210        610 PENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSM--ATNLETLKLSDCSSLVELPSSIQYLNKLEDL  686 (1153)
T ss_pred             ccCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCcccc--CCcccEEEecCCCCccccchhhhccCCCCEE
Confidence            455555666553 34455554555555666666555444444  444  55555666655555555543 2335555555


Q ss_pred             EEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCccee--------eeCCCC
Q 019416          116 KICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSK--------IRNCDS  186 (341)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~--------l~~~~~  186 (341)
                      ++++|..++.    +|..+. .+|+.|++++|..+..+|.  .+++|+.|++.++. +..+|..+.        +.++..
T Consensus       687 ~L~~c~~L~~----Lp~~i~l~sL~~L~Lsgc~~L~~~p~--~~~nL~~L~L~~n~-i~~lP~~~~l~~L~~L~l~~~~~  759 (1153)
T PLN03210        687 DMSRCENLEI----LPTGINLKSLYRLNLSGCSRLKSFPD--ISTNISWLDLDETA-IEEFPSNLRLENLDELILCEMKS  759 (1153)
T ss_pred             eCCCCCCcCc----cCCcCCCCCCCEEeCCCCCCcccccc--ccCCcCeeecCCCc-cccccccccccccccccccccch
Confidence            5555555555    554443 5555555555555544442  23345555554432 333333211        111100


Q ss_pred             CCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCccc
Q 019416          187 VVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENL  266 (341)
Q Consensus       187 l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l  266 (341)
                      ..-......+.......++.|+.|++++|..+..+|..++++++|+.|++++|..++.+|... .+++|++|++++|..+
T Consensus       760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L  838 (1153)
T PLN03210        760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL  838 (1153)
T ss_pred             hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence            000000000000000011247777777776666677777777777777777776666666543 3356777777776666


Q ss_pred             ccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeCCCCCCC
Q 019416          267 MSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLPVLE  340 (341)
Q Consensus       267 ~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C~~l~  340 (341)
                      +.+|..   .++|+.|++++ +.++.+|.. ...++|++|++.+|++++..+. .+..+++|+.+++.+ |++++
T Consensus       839 ~~~p~~---~~nL~~L~Ls~-n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~-C~~L~  907 (1153)
T PLN03210        839 RTFPDI---STNISDLNLSR-TGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSD-CGALT  907 (1153)
T ss_pred             cccccc---ccccCEeECCC-CCCccChHHHhcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCC-Ccccc
Confidence            555532   24566666655 345555543 3355666666666666664433 245556666666666 66553

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.85  E-value=2.2e-20  Score=194.51  Aligned_cols=281  Identities=25%  Similarity=0.366  Sum_probs=209.1

Q ss_pred             CCCCCC-CcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCCCCC
Q 019416           35 GIRTGE-TLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPT  110 (341)
Q Consensus        35 ~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  110 (341)
                      ++..+| +|+.|.+.++ .++.+|..+ ...+|++|++.++ ++..+   +..  +++|+.|+++++..+..+|....++
T Consensus       583 ~~~~lp~~Lr~L~~~~~-~l~~lP~~f-~~~~L~~L~L~~s-~l~~L~~~~~~--l~~Lk~L~Ls~~~~l~~ip~ls~l~  657 (1153)
T PLN03210        583 GFDYLPPKLRLLRWDKY-PLRCMPSNF-RPENLVKLQMQGS-KLEKLWDGVHS--LTGLRNIDLRGSKNLKEIPDLSMAT  657 (1153)
T ss_pred             chhhcCcccEEEEecCC-CCCCCCCcC-CccCCcEEECcCc-ccccccccccc--CCCCCEEECCCCCCcCcCCccccCC
Confidence            344443 4778888765 456666654 4589999999984 56555   677  9999999999888888888878899


Q ss_pred             CccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc------ceeee
Q 019416          111 TLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE------SSKIR  182 (341)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~------~l~l~  182 (341)
                      +|++|++.+|..+..    +|..++  ++|+.|++.+|+.++.+|....+++|+.|++++|..++.+|.      .+.++
T Consensus       658 ~Le~L~L~~c~~L~~----lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~  733 (1153)
T PLN03210        658 NLETLKLSDCSSLVE----LPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLD  733 (1153)
T ss_pred             cccEEEecCCCCccc----cchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecC
Confidence            999999999998888    888877  999999999999999999877788999999999988777664      22222


Q ss_pred             CCCCCCcCCCcccccccccc-cccccceEeeccCcCC------Ccc-cccCCCCCCcCeEEeecCCCCceecCCCCCCCC
Q 019416          183 NCDSVVGPEGESSLENMTSS-HTLELRELEIWDCLEL------EFL-PEDMHNFTDLNLLSISNCPSLESFPEGGLPNTS  254 (341)
Q Consensus       183 ~~~~l~~~~~~~~~~~l~~~-~~~~L~~L~l~~~~~l------~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~  254 (341)
                      ++.          +..+|.. .+++|+.|.+.++...      ..+ +.....+++|+.|++++|+.+..+|.....+++
T Consensus       734 ~n~----------i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~  803 (1153)
T PLN03210        734 ETA----------IEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHK  803 (1153)
T ss_pred             CCc----------cccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCC
Confidence            221          2223322 3445777766654321      111 111223468888888888877777765545678


Q ss_pred             cceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          255 LTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       255 L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      |+.|++++|+.++.+|... .+++|+.|++++|..+..++.  .+++|+.|++.++ .++..|.| +..+++|+.|++.+
T Consensus       804 L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~--~~~nL~~L~Ls~n-~i~~iP~s-i~~l~~L~~L~L~~  878 (1153)
T PLN03210        804 LEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPD--ISTNISDLNLSRT-GIEEVPWW-IEKFSNLSFLDMNG  878 (1153)
T ss_pred             CCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccc--cccccCEeECCCC-CCccChHH-HhcCCCCCEEECCC
Confidence            9999999888888888765 678899999999888877765  5678889998775 45556654 78999999999999


Q ss_pred             CCCCCC
Q 019416          335 GLPVLE  340 (341)
Q Consensus       335 ~C~~l~  340 (341)
                       |++++
T Consensus       879 -C~~L~  883 (1153)
T PLN03210        879 -CNNLQ  883 (1153)
T ss_pred             -CCCcC
Confidence             99875

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.81  E-value=5.1e-19  Score=182.97  Aligned_cols=102  Identities=18%  Similarity=0.121  Sum_probs=47.1

Q ss_pred             CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccC-CCCCCCcc
Q 019416           38 TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTLK  113 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~  113 (341)
                      .+++|++|++++|.....+|..+..+++|++|++++|.....+   +..  +++|++|++++|.....+|. .+.+++|+
T Consensus       138 ~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  215 (968)
T PLN00113        138 SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTN--LTSLEFLTLASNQLVGQIPRELGQMKSLK  215 (968)
T ss_pred             ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhh--CcCCCeeeccCCCCcCcCChHHcCcCCcc
Confidence            4555666666654433344444555556666666553221111   445  55555555555433323332 22344555


Q ss_pred             EEEEeCCCChHHHHHHhhhhcc--cccceEeecC
Q 019416          114 RLKICDCTNAELILKVLMDQKG--LALESLEVDG  145 (341)
Q Consensus       114 ~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~  145 (341)
                      .|++++|.....    +|..++  ++|++|++++
T Consensus       216 ~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~  245 (968)
T PLN00113        216 WIYLGYNNLSGE----IPYEIGGLTSLNHLDLVY  245 (968)
T ss_pred             EEECcCCccCCc----CChhHhcCCCCCEEECcC
Confidence            555555443222    333333  4444444444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.80  E-value=4.4e-19  Score=183.48  Aligned_cols=284  Identities=14%  Similarity=0.082  Sum_probs=138.3

Q ss_pred             CCCCCCcCeEEcCCCCCCcccccccc-CCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccC-CCCCCCc
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSEL-AATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTL  112 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L  112 (341)
                      +..+++|++|++++|.....+|.... .+++|++|++++|+....+ .+.  +++|++|++++|.....+|. .+.+++|
T Consensus        89 ~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~--l~~L~~L~Ls~n~~~~~~p~~~~~l~~L  166 (968)
T PLN00113         89 IFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGS--IPNLETLDLSNNMLSGEIPNDIGSFSSL  166 (968)
T ss_pred             HhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccc--cCCCCEEECcCCcccccCChHHhcCCCC
Confidence            44566666666666543334454433 5666666666663222222 445  66666666666533333332 3345666


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCc---------cee
Q 019416          113 KRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGE---------SSK  180 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~---------~l~  180 (341)
                      ++|++++|.....    +|..++  ++|++|++++|.....+|.. ..+++|+.|+++++.-...+|.         .++
T Consensus       167 ~~L~L~~n~l~~~----~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  242 (968)
T PLN00113        167 KVLDLGGNVLVGK----IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLD  242 (968)
T ss_pred             CEEECccCccccc----CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEE
Confidence            6666666654333    454444  66666666665433334433 3455666666665432222322         222


Q ss_pred             eeCCCCCCc-CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEe
Q 019416          181 IRNCDSVVG-PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLL  259 (341)
Q Consensus       181 l~~~~~l~~-~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~  259 (341)
                      ++++..... |..   +.     .+++|+.|+++++.....+|..+..+++|+.|++++|.-...+|.....+++|++|+
T Consensus       243 L~~n~l~~~~p~~---l~-----~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~  314 (968)
T PLN00113        243 LVYNNLTGPIPSS---LG-----NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILH  314 (968)
T ss_pred             CcCceeccccChh---Hh-----CCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEE
Confidence            222211100 000   00     233455555555443344455555555566666555432223333222234566666


Q ss_pred             cccCcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          260 ISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       260 l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      ++++.-...+|..+..+++|+.|++++|.--..++.. +..++|+.|++++|......+.+ +..+.+|+.+++.+
T Consensus       315 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~-~~~~~~L~~L~l~~  389 (968)
T PLN00113        315 LFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEG-LCSSGNLFKLILFS  389 (968)
T ss_pred             CCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChh-HhCcCCCCEEECcC
Confidence            6654333344555556666666666654332233332 23456666666655433333332 44556666666655

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.67  E-value=2.4e-17  Score=151.48  Aligned_cols=301  Identities=15%  Similarity=0.211  Sum_probs=176.7

Q ss_pred             CCchhhhhhcccCC---CccccCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCC
Q 019416           16 PVPKNFLALALFPD---EDKILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTS   88 (341)
Q Consensus        16 ~~~~~~~~l~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~   88 (341)
                      .+|.....|++-.+   ......+.++|+|+.+++.+ +.++.+|.......+|+.|++.. +.+..+    +..  ++.
T Consensus        75 ~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~--l~a  150 (873)
T KOG4194|consen   75 FLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSA--LPA  150 (873)
T ss_pred             cCccceeeeeccccccccCcHHHHhcCCcceeeeecc-chhhhcccccccccceeEEeeec-cccccccHHHHHh--Hhh
Confidence            45555555555332   34445677899999999987 58888888666667899999988 566665    888  899


Q ss_pred             cceEeeecCCCCccccCCCCC--CCccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccCCC--CCcccc
Q 019416           89 LEYLEFSSCLFFSNSKQDYFP--TTLKRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLPIN--QLPATL  161 (341)
Q Consensus        89 L~~L~l~~~~~l~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~--~~~~~L  161 (341)
                      |+.||++.+ .+.+++...++  .++++|+++++....     +..+.+   .+|.+|.++. +.++.+|.-  ..+++|
T Consensus       151 lrslDLSrN-~is~i~~~sfp~~~ni~~L~La~N~It~-----l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~L~~L  223 (873)
T KOG4194|consen  151 LRSLDLSRN-LISEIPKPSFPAKVNIKKLNLASNRITT-----LETGHFDSLNSLLTLKLSR-NRITTLPQRSFKRLPKL  223 (873)
T ss_pred             hhhhhhhhc-hhhcccCCCCCCCCCceEEeeccccccc-----cccccccccchheeeeccc-CcccccCHHHhhhcchh
Confidence            999999884 78888776664  579999999987433     222222   7888888887 678888765  457889


Q ss_pred             ceEEeeccCCccccCcceeeeCCCCCCc-CCCccccccccc---ccccccceEeeccCcCCCcc-cccCCCCCCcCeEEe
Q 019416          162 RHLRIVNCMNLKSLGESSKIRNCDSVVG-PEGESSLENMTS---SHTLELRELEIWDCLELEFL-PEDMHNFTDLNLLSI  236 (341)
Q Consensus       162 ~~L~l~~~~~l~~~~~~l~l~~~~~l~~-~~~~~~~~~l~~---~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l  236 (341)
                      ++|++..+. ++ +.+.+.+.+.+.++. ...-.++..+.-   =.+.+++.|.+..+ .+..+ -.|+.+++.|+.|++
T Consensus       224 ~~LdLnrN~-ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~l  300 (873)
T KOG4194|consen  224 ESLDLNRNR-IR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDL  300 (873)
T ss_pred             hhhhccccc-ee-eehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccc-hhhhhhcccccccchhhhhcc
Confidence            998887632 22 222333333332222 000000000000   02335666666653 23333 245566677777777


Q ss_pred             ecCCCCceecCCCC-CCCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCCCC----------------
Q 019416          237 SNCPSLESFPEGGL-PNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHGGL----------------  298 (341)
Q Consensus       237 ~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~----------------  298 (341)
                      +++ .+..+....+ ..++|+.|+++.+ +++.+++ ++..+.+|++|.+++ +.+..+.++.+                
T Consensus       301 S~N-aI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~-Nsi~~l~e~af~~lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  301 SYN-AIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH-NSIDHLAEGAFVGLSSLHKLDLRSNEL  377 (873)
T ss_pred             chh-hhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc-cchHHHHhhHHHHhhhhhhhcCcCCeE
Confidence            763 3444433222 2356777777663 4555543 344444444444443 23333322211                


Q ss_pred             -------------CCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          299 -------------PPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       299 -------------~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                                   +++|+.|++.++ +++..++.++..+..||+|++.+
T Consensus       378 s~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfsgl~~LE~LdL~~  425 (873)
T KOG4194|consen  378 SWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFSGLEALEHLDLGD  425 (873)
T ss_pred             EEEEecchhhhccchhhhheeecCc-eeeecchhhhccCcccceecCCC
Confidence                         456666666553 44444444566777777777766

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.55  E-value=1.6e-15  Score=139.63  Aligned_cols=249  Identities=13%  Similarity=0.231  Sum_probs=135.8

Q ss_pred             CCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCC-CCccEEEEeCCCChHHHHHHhhhhcc--c
Q 019416           64 TTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFP-TTLKRLKICDCTNAELILKVLMDQKG--L  136 (341)
Q Consensus        64 ~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~--~  136 (341)
                      ..-+.|++++ +++.++    |..  +++|+.+++.. +.+..+|..+.. ..+++|++..+.....    -.+.+.  +
T Consensus        78 ~~t~~Ldlsn-Nkl~~id~~~f~n--l~nLq~v~l~~-N~Lt~IP~f~~~sghl~~L~L~~N~I~sv----~se~L~~l~  149 (873)
T KOG4194|consen   78 SQTQTLDLSN-NKLSHIDFEFFYN--LPNLQEVNLNK-NELTRIPRFGHESGHLEKLDLRHNLISSV----TSEELSALP  149 (873)
T ss_pred             cceeeeeccc-cccccCcHHHHhc--CCcceeeeecc-chhhhcccccccccceeEEeeeccccccc----cHHHHHhHh
Confidence            3445567766 555555    556  67777777765 356666665443 3366666666542221    111111  5


Q ss_pred             ccceEeecCCCCccccCCCCCc--cccceEEeeccCCccccCc----------ceeeeCCCCCCcCCCcccccccccccc
Q 019416          137 ALESLEVDGCSSLFSLPINQLP--ATLRHLRIVNCMNLKSLGE----------SSKIRNCDSVVGPEGESSLENMTSSHT  204 (341)
Q Consensus       137 ~L~~L~l~~~~~l~~l~~~~~~--~~L~~L~l~~~~~l~~~~~----------~l~l~~~~~l~~~~~~~~~~~l~~~~~  204 (341)
                      .|+.|+++. +.+..++...++  .++++|+++++ .++.+..          .+.+++..--+-|.  ..|+     .+
T Consensus       150 alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~--r~Fk-----~L  220 (873)
T KOG4194|consen  150 ALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQ--RSFK-----RL  220 (873)
T ss_pred             hhhhhhhhh-chhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCH--HHhh-----hc
Confidence            666666655 455555554443  35666666553 2332221          11111111000011  1122     23


Q ss_pred             cccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEecccCcccccchh-hhccCCCcCe
Q 019416          205 LELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISECENLMSLPH-QIHKATSLQD  281 (341)
Q Consensus       205 ~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~  281 (341)
                      ++|+.|++..+ .++.+ -..|+++++|+.|.+..+ .+..+.++.+ .+.++++|+++. +++..+.+ ++-++++|++
T Consensus       221 ~~L~~LdLnrN-~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~Fy~l~kme~l~L~~-N~l~~vn~g~lfgLt~L~~  297 (873)
T KOG4194|consen  221 PKLESLDLNRN-RIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAFYGLEKMEHLNLET-NRLQAVNEGWLFGLTSLEQ  297 (873)
T ss_pred             chhhhhhcccc-ceeeehhhhhcCchhhhhhhhhhc-CcccccCcceeeecccceeeccc-chhhhhhcccccccchhhh
Confidence            36777777663 33333 345677888888888763 4666666443 357888888887 35776654 5667788888


Q ss_pred             EeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          282 LSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       282 L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      |++++ +.|.++...  .+.++|++|+++++ .++.++...+..+..|++|+++.
T Consensus       298 L~lS~-NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~  350 (873)
T KOG4194|consen  298 LDLSY-NAIQRIHIDSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSH  350 (873)
T ss_pred             hccch-hhhheeecchhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccc
Confidence            88876 567766655  45677888888764 33333222345555666665554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.48  E-value=1.1e-15  Score=141.80  Aligned_cols=277  Identities=16%  Similarity=0.160  Sum_probs=186.0

Q ss_pred             cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCcc--ccC-CC
Q 019416           34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSN--SKQ-DY  107 (341)
Q Consensus        34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~--~~~-~~  107 (341)
                      .....+..++-|.|.. ..+..+|...+.+.+|+.|.++. +++..+   +..  ++.|+.+.++++ .+.+  +|. +.
T Consensus        26 ~~v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~~H-N~L~~vhGELs~--Lp~LRsv~~R~N-~LKnsGiP~diF  100 (1255)
T KOG0444|consen   26 HDVEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSMAH-NQLISVHGELSD--LPRLRSVIVRDN-NLKNSGIPTDIF  100 (1255)
T ss_pred             hhHHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhhhh-hhhHhhhhhhcc--chhhHHHhhhcc-ccccCCCCchhc
Confidence            3445688888999986 67888898888999999999998 566666   778  889999999875 4443  333 33


Q ss_pred             CCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCc------
Q 019416          108 FPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGE------  177 (341)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~------  177 (341)
                      .+..|..|+++++. +..    .|..+.  .++..|+++. +++..+|..  .++..|-.|+++++ .++.+|.      
T Consensus       101 ~l~dLt~lDLShNq-L~E----vP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~  173 (1255)
T KOG0444|consen  101 RLKDLTILDLSHNQ-LRE----VPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLS  173 (1255)
T ss_pred             ccccceeeecchhh-hhh----cchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHh
Confidence            37888999999875 566    787776  8888899987 788888865  45667778888874 4666654      


Q ss_pred             ---ceeeeCCCCCCcCCCcccccccccccccccceEeeccCcC-CCcccccCCCCCCcCeEEeecCCCCceecCCCCCCC
Q 019416          178 ---SSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLE-LEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNT  253 (341)
Q Consensus       178 ---~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~-l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~  253 (341)
                         ++++++.+.     ..+-++-+|  +++.|+.|.+++... +..+|..+..+.+|..++++. +++..+|+.....+
T Consensus       174 ~LqtL~Ls~NPL-----~hfQLrQLP--smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~  245 (1255)
T KOG0444|consen  174 MLQTLKLSNNPL-----NHFQLRQLP--SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLR  245 (1255)
T ss_pred             hhhhhhcCCChh-----hHHHHhcCc--cchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhh
Confidence               444444332     112222244  455566666666432 245666777777777777776 34666666555556


Q ss_pred             CcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCC--ccccccccCCCceeEE
Q 019416          254 SLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLI--PLSQWELHKLKHLNKY  330 (341)
Q Consensus       254 ~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~--~~~~~~i~~~~~L~~l  330 (341)
                      +|+.|.++++ +++++.-......+|++|+++. +++..+|.. --++.|+.|...++ +++  ..|. ||+++..|+..
T Consensus       246 ~LrrLNLS~N-~iteL~~~~~~W~~lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~N-kL~FeGiPS-GIGKL~~Levf  321 (1255)
T KOG0444|consen  246 NLRRLNLSGN-KITELNMTEGEWENLETLNLSR-NQLTVLPDAVCKLTKLTKLYANNN-KLTFEGIPS-GIGKLIQLEVF  321 (1255)
T ss_pred             hhheeccCcC-ceeeeeccHHHHhhhhhhcccc-chhccchHHHhhhHHHHHHHhccC-cccccCCcc-chhhhhhhHHH
Confidence            7777777773 5776655556667777777776 566666654 22566676666543 333  3444 57777777777


Q ss_pred             EEeC
Q 019416          331 TILG  334 (341)
Q Consensus       331 ~l~~  334 (341)
                      ..++
T Consensus       322 ~aan  325 (1255)
T KOG0444|consen  322 HAAN  325 (1255)
T ss_pred             Hhhc
Confidence            6555

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.45  E-value=2.6e-12  Score=126.53  Aligned_cols=248  Identities=29%  Similarity=0.339  Sum_probs=166.9

Q ss_pred             CCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhhhcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeC
Q 019416           40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICD  119 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~  119 (341)
                      .+-..|+++++ .++.+|..+.  ++|+.|.+.+ +++..+-..  +++|++|++++| .+..+|.  .+++|++|++.+
T Consensus       201 ~~~~~LdLs~~-~LtsLP~~l~--~~L~~L~L~~-N~Lt~LP~l--p~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~Ls~  271 (788)
T PRK15387        201 NGNAVLNVGES-GLTTLPDCLP--AHITTLVIPD-NNLTSLPAL--PPELRTLEVSGN-QLTSLPV--LPPGLLELSIFS  271 (788)
T ss_pred             CCCcEEEcCCC-CCCcCCcchh--cCCCEEEccC-CcCCCCCCC--CCCCcEEEecCC-ccCcccC--cccccceeeccC
Confidence            34567888875 6667777554  4788888887 566666555  678888998875 7777764  457888888888


Q ss_pred             CCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc------ceeeeCCCCCCcCCCc
Q 019416          120 CTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE------SSKIRNCDSVVGPEGE  193 (341)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~------~l~l~~~~~l~~~~~~  193 (341)
                      |. +..    +|... .+|+.|++++ +.++.+|.  .+++|+.|+++++ .++.+|.      .+.++++. ++.    
T Consensus       272 N~-L~~----Lp~lp-~~L~~L~Ls~-N~Lt~LP~--~p~~L~~LdLS~N-~L~~Lp~lp~~L~~L~Ls~N~-L~~----  336 (788)
T PRK15387        272 NP-LTH----LPALP-SGLCKLWIFG-NQLTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQ-LTS----  336 (788)
T ss_pred             Cc-hhh----hhhch-hhcCEEECcC-Cccccccc--cccccceeECCCC-ccccCCCCcccccccccccCc-ccc----
Confidence            75 555    55543 6788888877 46777664  4567888888775 4555443      22222211 111    


Q ss_pred             ccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhh
Q 019416          194 SSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQI  273 (341)
Q Consensus       194 ~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l  273 (341)
                        +..+|.    +|+.|++++ +.++.+|...   ++|+.|+++++ .+..+|..  + .+|+.|+++++ .++.+|.. 
T Consensus       337 --LP~lp~----~Lq~LdLS~-N~Ls~LP~lp---~~L~~L~Ls~N-~L~~LP~l--~-~~L~~LdLs~N-~Lt~LP~l-  400 (788)
T PRK15387        337 --LPTLPS----GLQELSVSD-NQLASLPTLP---SELYKLWAYNN-RLTSLPAL--P-SGLKELIVSGN-RLTSLPVL-  400 (788)
T ss_pred             --cccccc----ccceEecCC-CccCCCCCCC---cccceehhhcc-ccccCccc--c-cccceEEecCC-cccCCCCc-
Confidence              111232    488888887 4566676543   56778888774 45556542  2 48999999885 58877743 


Q ss_pred             ccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          274 HKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       274 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                        .++|+.|+++++ .+..+|.  .+.+|+.|+++++ +++.+|.. +.++++|+.+++++
T Consensus       401 --~s~L~~LdLS~N-~LssIP~--l~~~L~~L~Ls~N-qLt~LP~s-l~~L~~L~~LdLs~  454 (788)
T PRK15387        401 --PSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPES-LIHLSSETTVNLEG  454 (788)
T ss_pred             --ccCCCEEEccCC-cCCCCCc--chhhhhhhhhccC-cccccChH-HhhccCCCeEECCC
Confidence              367899999884 6777775  5668888998875 45556653 67889999999998

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.44  E-value=3.1e-15  Score=138.84  Aligned_cols=105  Identities=25%  Similarity=0.381  Sum_probs=75.5

Q ss_pred             cceEeeccCcCCCcccccCCCCCCcCeEEeecCCC-CceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeec
Q 019416          207 LRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPS-LESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVS  285 (341)
Q Consensus       207 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~-l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~  285 (341)
                      |++|.+++ +.++.+|..+..++.|+.|.+.++.- .+.+|.+.-.+.+|+.+..++ +.++-+|+++..+..|+.|.+.
T Consensus       270 lEtLNlSr-NQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~  347 (1255)
T KOG0444|consen  270 LETLNLSR-NQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLD  347 (1255)
T ss_pred             hhhhcccc-chhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhccc
Confidence            55566655 45566677777777777776665431 244555554456777777776 4688889999999999999995


Q ss_pred             CCCCCccCCCC-CCCCCccEEEeecCCCCC
Q 019416          286 GCPSLMSFPHG-GLPPNLISLGIIDCENLI  314 (341)
Q Consensus       286 ~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~  314 (341)
                       |+.+..+|+. .+++.|++|+++.++++.
T Consensus       348 -~NrLiTLPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  348 -HNRLITLPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             -ccceeechhhhhhcCCcceeeccCCcCcc
Confidence             5777788876 678899999999988776

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.39  E-value=5.9e-12  Score=124.08  Aligned_cols=118  Identities=25%  Similarity=0.220  Sum_probs=67.0

Q ss_pred             CCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhhhcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEe
Q 019416           39 GETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKIC  118 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~  118 (341)
                      .++|++|++++| .++.+|..   .++|+.|++++ +.+..+-..  +.+|+.|++++| .+..+|.  .+++|+.|+++
T Consensus       241 p~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~-N~L~~Lp~l--p~~L~~L~Ls~N-~Lt~LP~--~p~~L~~LdLS  310 (788)
T PRK15387        241 PPELRTLEVSGN-QLTSLPVL---PPGLLELSIFS-NPLTHLPAL--PSGLCKLWIFGN-QLTSLPV--LPPGLQELSVS  310 (788)
T ss_pred             CCCCcEEEecCC-ccCcccCc---ccccceeeccC-Cchhhhhhc--hhhcCEEECcCC-ccccccc--cccccceeECC
Confidence            456777777764 45555431   25667777766 345444333  456666777664 5555553  34667777777


Q ss_pred             CCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccC
Q 019416          119 DCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLG  176 (341)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~  176 (341)
                      +|. +..    +|... .+|+.|++.+ +.++.+|.  .+.+|+.|+++++ .++.+|
T Consensus       311 ~N~-L~~----Lp~lp-~~L~~L~Ls~-N~L~~LP~--lp~~Lq~LdLS~N-~Ls~LP  358 (788)
T PRK15387        311 DNQ-LAS----LPALP-SELCKLWAYN-NQLTSLPT--LPSGLQELSVSDN-QLASLP  358 (788)
T ss_pred             CCc-ccc----CCCCc-cccccccccc-Cccccccc--cccccceEecCCC-ccCCCC
Confidence            763 444    44322 5566666665 35555552  3456777777663 444444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.39  E-value=1.9e-15  Score=133.47  Aligned_cols=280  Identities=18%  Similarity=0.233  Sum_probs=177.1

Q ss_pred             CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCC--CCCCCcc
Q 019416           38 TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTTLK  113 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~  113 (341)
                      .+..|++|+... +-++.+|+..+++..|..|.+.. ++++.+  |++  +..|++++++. +.+..+|..  ..++++.
T Consensus       181 ~m~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~-Nki~~lPef~g--cs~L~Elh~g~-N~i~~lpae~~~~L~~l~  255 (565)
T KOG0472|consen  181 AMKRLKHLDCNS-NLLETLPPELGGLESLELLYLRR-NKIRFLPEFPG--CSLLKELHVGE-NQIEMLPAEHLKHLNSLL  255 (565)
T ss_pred             HHHHHHhcccch-hhhhcCChhhcchhhhHHHHhhh-cccccCCCCCc--cHHHHHHHhcc-cHHHhhHHHHhcccccce
Confidence            366666666665 35566677677777777777776 566665  777  77888888765 466666652  2478888


Q ss_pred             EEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCc-------------
Q 019416          114 RLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGE-------------  177 (341)
Q Consensus       114 ~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~-------------  177 (341)
                      .|+++++. ++.    +|+.+.  .+|+.|++++ +.++.+|.. +++ +|++|-+.+.+ ++.+..             
T Consensus       256 vLDLRdNk-lke----~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~vLKy  327 (565)
T KOG0472|consen  256 VLDLRDNK-LKE----VPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNP-LRTIRREIISKGTQEVLKY  327 (565)
T ss_pred             eeeccccc-ccc----CchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCCc-hHHHHHHHHcccHHHHHHH
Confidence            88888875 666    887777  8899999987 688888876 555 77777776654 222211             


Q ss_pred             ---cee---eeCCCCCCc-----CCCc-------------------------------------------ccccccccc-
Q 019416          178 ---SSK---IRNCDSVVG-----PEGE-------------------------------------------SSLENMTSS-  202 (341)
Q Consensus       178 ---~l~---l~~~~~l~~-----~~~~-------------------------------------------~~~~~l~~~-  202 (341)
                         .+.   ++.....+.     +.+.                                           ..++.+|+. 
T Consensus       328 Lrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L  407 (565)
T KOG0472|consen  328 LRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRL  407 (565)
T ss_pred             HHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhh
Confidence               000   000000000     0000                                           001111110 


Q ss_pred             -cccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCe
Q 019416          203 -HTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQD  281 (341)
Q Consensus       203 -~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~  281 (341)
                       .+..+.+.-+...+.+..+|..+..+++|..|+++++ -+..+|........|+.|+++.+ +++.+|..+..+..++.
T Consensus       408 ~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~N-rFr~lP~~~y~lq~lEt  485 (565)
T KOG0472|consen  408 VELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFN-RFRMLPECLYELQTLET  485 (565)
T ss_pred             HHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc-hhhhcchhhhhhhhhheeccccc-ccccchHHHhhHHHHHH
Confidence             0011111111222344455666777899999999984 46677775544458999999985 78889987777777777


Q ss_pred             EeecCCCCCccCCCCC--CCCCccEEEeecCCCCCccccccccCCCceeEEEEeCC
Q 019416          282 LSVSGCPSLMSFPHGG--LPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGG  335 (341)
Q Consensus       282 L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~  335 (341)
                      +..++ ++++.++..+  ...+|.+|++.++ .++..|. .++++++|++|++.||
T Consensus       486 llas~-nqi~~vd~~~l~nm~nL~tLDL~nN-dlq~IPp-~LgnmtnL~hLeL~gN  538 (565)
T KOG0472|consen  486 LLASN-NQIGSVDPSGLKNMRNLTTLDLQNN-DLQQIPP-ILGNMTNLRHLELDGN  538 (565)
T ss_pred             HHhcc-ccccccChHHhhhhhhcceeccCCC-chhhCCh-hhccccceeEEEecCC
Confidence            76665 6888888764  3678999999765 3443444 4799999999999983

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.35  E-value=3.7e-12  Score=125.94  Aligned_cols=122  Identities=20%  Similarity=0.270  Sum_probs=82.2

Q ss_pred             CCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEe
Q 019416           40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKIC  118 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~  118 (341)
                      .+...|+++++ .++.+|..+.  ++|+.|++++ +++..+ ...  +.+|+.|++++| .+..+|. ..+++|+.|+++
T Consensus       178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~-N~LtsLP~~l--~~nL~~L~Ls~N-~LtsLP~-~l~~~L~~L~Ls  249 (754)
T PRK15370        178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDN-NELKSLPENL--QGNIKTLYANSN-QLTSIPA-TLPDTIQEMELS  249 (754)
T ss_pred             cCceEEEeCCC-CcCcCCcccc--cCCcEEEecC-CCCCcCChhh--ccCCCEEECCCC-ccccCCh-hhhccccEEECc
Confidence            34677888864 5666665432  5788888887 466665 444  568888888875 5666664 345678888888


Q ss_pred             CCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc
Q 019416          119 DCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE  177 (341)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~  177 (341)
                      +|. +..    +|..+..+|+.|++++ +.++.+|.. .+++|+.|+++++ +++.+|.
T Consensus       250 ~N~-L~~----LP~~l~s~L~~L~Ls~-N~L~~LP~~-l~~sL~~L~Ls~N-~Lt~LP~  300 (754)
T PRK15370        250 INR-ITE----LPERLPSALQSLDLFH-NKISCLPEN-LPEELRYLSVYDN-SIRTLPA  300 (754)
T ss_pred             CCc-cCc----CChhHhCCCCEEECcC-CccCccccc-cCCCCcEEECCCC-ccccCcc
Confidence            876 445    6655546788888875 577776642 3457888888775 4555543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.23  E-value=3.8e-11  Score=118.88  Aligned_cols=222  Identities=24%  Similarity=0.345  Sum_probs=148.4

Q ss_pred             CCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEe
Q 019416           40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKIC  118 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~  118 (341)
                      ++|+.|++++| .++.+|..+.  .+|+.|++++ +++..+ ...  ..+|+.|++++| .+..+|. ..+.+|+.|+++
T Consensus       199 ~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~-N~LtsLP~~l--~~~L~~L~Ls~N-~L~~LP~-~l~s~L~~L~Ls  270 (754)
T PRK15370        199 EQITTLILDNN-ELKSLPENLQ--GNIKTLYANS-NQLTSIPATL--PDTIQEMELSIN-RITELPE-RLPSALQSLDLF  270 (754)
T ss_pred             cCCcEEEecCC-CCCcCChhhc--cCCCEEECCC-CccccCChhh--hccccEEECcCC-ccCcCCh-hHhCCCCEEECc
Confidence            46899999975 6677776443  6899999998 456665 333  457899999886 5667764 235789999998


Q ss_pred             CCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccc
Q 019416          119 DCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLEN  198 (341)
Q Consensus       119 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~  198 (341)
                      +|. +..    +|..+.++|+.|++++| .++.+|. ..+++|+.|+++++ .+..+|..                    
T Consensus       271 ~N~-L~~----LP~~l~~sL~~L~Ls~N-~Lt~LP~-~lp~sL~~L~Ls~N-~Lt~LP~~--------------------  322 (754)
T PRK15370        271 HNK-ISC----LPENLPEELRYLSVYDN-SIRTLPA-HLPSGITHLNVQSN-SLTALPET--------------------  322 (754)
T ss_pred             CCc-cCc----cccccCCCCcEEECCCC-ccccCcc-cchhhHHHHHhcCC-ccccCCcc--------------------
Confidence            764 556    77665578999999884 6777664 23457888888774 34444321                    


Q ss_pred             cccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCC
Q 019416          199 MTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATS  278 (341)
Q Consensus       199 l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~  278 (341)
                      ++    ++|+.|.+.+| .+..+|..+  .++|+.|++++|. +..+|... + ++|++|++++| .++.+|..+.  .+
T Consensus       323 l~----~sL~~L~Ls~N-~Lt~LP~~l--~~sL~~L~Ls~N~-L~~LP~~l-p-~~L~~LdLs~N-~Lt~LP~~l~--~s  389 (754)
T PRK15370        323 LP----PGLKTLEAGEN-ALTSLPASL--PPELQVLDVSKNQ-ITVLPETL-P-PTITTLDVSRN-ALTNLPENLP--AA  389 (754)
T ss_pred             cc----ccceeccccCC-ccccCChhh--cCcccEEECCCCC-CCcCChhh-c-CCcCEEECCCC-cCCCCCHhHH--HH
Confidence            12    24788888775 355566554  2678888888763 55555432 2 47888888875 4777776543  36


Q ss_pred             cCeEeecCCCCCccCCCC-----CCCCCccEEEeecCC
Q 019416          279 LQDLSVSGCPSLMSFPHG-----GLPPNLISLGIIDCE  311 (341)
Q Consensus       279 L~~L~l~~c~~l~~~~~~-----~~~~~L~~L~l~~c~  311 (341)
                      |+.|++++ +.+..+|..     ...+++..+++.+++
T Consensus       390 L~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Np  426 (754)
T PRK15370        390 LQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNP  426 (754)
T ss_pred             HHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCC
Confidence            77788877 456666643     112567777777765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.10  E-value=4.1e-13  Score=118.87  Aligned_cols=245  Identities=22%  Similarity=0.259  Sum_probs=120.5

Q ss_pred             CCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccC-CCCCCCccEE
Q 019416           40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTLKRL  115 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L  115 (341)
                      ..+.+|.++.+ .++.+-+....+..|.+|++++ +++...   ++.  +.+++.++.+.+ .+..+|. ++..++++++
T Consensus        45 v~l~~lils~N-~l~~l~~dl~nL~~l~vl~~~~-n~l~~lp~aig~--l~~l~~l~vs~n-~ls~lp~~i~s~~~l~~l  119 (565)
T KOG0472|consen   45 VDLQKLILSHN-DLEVLREDLKNLACLTVLNVHD-NKLSQLPAAIGE--LEALKSLNVSHN-KLSELPEQIGSLISLVKL  119 (565)
T ss_pred             cchhhhhhccC-chhhccHhhhcccceeEEEecc-chhhhCCHHHHH--HHHHHHhhcccc-hHhhccHHHhhhhhhhhh
Confidence            34556667654 3344434455667777777777 444444   566  666777777664 4555543 4446677777


Q ss_pred             EEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCc-ce------eeeCCC
Q 019416          116 KICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGE-SS------KIRNCD  185 (341)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~-~l------~l~~~~  185 (341)
                      +.+++. +..    ++++++  ..++.++-.+ +++..+|.+ .++.++..+++.+. +++.+|. .+      .+..|+
T Consensus       120 ~~s~n~-~~e----l~~~i~~~~~l~dl~~~~-N~i~slp~~~~~~~~l~~l~~~~n-~l~~l~~~~i~m~~L~~ld~~~  192 (565)
T KOG0472|consen  120 DCSSNE-LKE----LPDSIGRLLDLEDLDATN-NQISSLPEDMVNLSKLSKLDLEGN-KLKALPENHIAMKRLKHLDCNS  192 (565)
T ss_pred             hccccc-eee----cCchHHHHhhhhhhhccc-cccccCchHHHHHHHHHHhhcccc-chhhCCHHHHHHHHHHhcccch
Confidence            777665 233    555555  5555555544 566666655 44555556665553 2333332 00      001111


Q ss_pred             CCCcCCCcccccccccc--cccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEeccc
Q 019416          186 SVVGPEGESSLENMTSS--HTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISE  262 (341)
Q Consensus       186 ~l~~~~~~~~~~~l~~~--~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~  262 (341)
                      ++-.        .+|+.  .+..|..|++.+ +++..+| .|.++..|+++.++.+ .++.+|.... .++++..|++.+
T Consensus       193 N~L~--------tlP~~lg~l~~L~~LyL~~-Nki~~lP-ef~gcs~L~Elh~g~N-~i~~lpae~~~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  193 NLLE--------TLPPELGGLESLELLYLRR-NKIRFLP-EFPGCSLLKELHVGEN-QIEMLPAEHLKHLNSLLVLDLRD  261 (565)
T ss_pred             hhhh--------cCChhhcchhhhHHHHhhh-cccccCC-CCCccHHHHHHHhccc-HHHhhHHHHhcccccceeeeccc
Confidence            1000        01111  122344445544 3444554 4455555555555542 3443433222 234555555555


Q ss_pred             CcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecC
Q 019416          263 CENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDC  310 (341)
Q Consensus       263 ~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c  310 (341)
                       ++++++|..+..+.+|+.|++++ +.+..+|.. +.. .|+.|.+.|+
T Consensus       262 -Nklke~Pde~clLrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGN  307 (565)
T KOG0472|consen  262 -NKLKEVPDEICLLRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGN  307 (565)
T ss_pred             -cccccCchHHHHhhhhhhhcccC-CccccCCcccccc-eeeehhhcCC
Confidence             34555555555555556666554 345545443 223 4444444443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.06  E-value=5.1e-12  Score=122.35  Aligned_cols=104  Identities=25%  Similarity=0.399  Sum_probs=55.5

Q ss_pred             cccceEeeccCcCCCcccc-cCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEe
Q 019416          205 LELRELEIWDCLELEFLPE-DMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLS  283 (341)
Q Consensus       205 ~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~  283 (341)
                      .+|+.|++++ +.+..+|. .+.++..|++|+++++ .++.+|+....+..|++|...+ +.+..+| .+..++.|+.++
T Consensus       383 ~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~LSGN-kL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lD  458 (1081)
T KOG0618|consen  383 KHLKVLHLSY-NRLNSFPASKLRKLEELEELNLSGN-KLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLD  458 (1081)
T ss_pred             cceeeeeecc-cccccCCHHHHhchHHhHHHhcccc-hhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEe
Confidence            3566666655 23444442 3345556666666662 4555555444445666665554 3455566 455566666666


Q ss_pred             ecCCCCCccCCCC-CCC-CCccEEEeecCCCC
Q 019416          284 VSGCPSLMSFPHG-GLP-PNLISLGIIDCENL  313 (341)
Q Consensus       284 l~~c~~l~~~~~~-~~~-~~L~~L~l~~c~~~  313 (341)
                      ++ |++++.+-.. ..| ++|++|+++++...
T Consensus       459 lS-~N~L~~~~l~~~~p~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  459 LS-CNNLSEVTLPEALPSPNLKYLDLSGNTRL  489 (1081)
T ss_pred             cc-cchhhhhhhhhhCCCcccceeeccCCccc
Confidence            64 4555544332 334 56666666665543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.06  E-value=8.6e-12  Score=120.80  Aligned_cols=275  Identities=24%  Similarity=0.266  Sum_probs=174.8

Q ss_pred             cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccC-CCCCC
Q 019416           34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPT  110 (341)
Q Consensus        34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~  110 (341)
                      ..+..+++|++|....+ .+..+   ...-++|+.|....|.-. ..  -..  -.+|++++++.+ .+..+|. ++-+.
T Consensus       193 ~dls~~~~l~~l~c~rn-~ls~l---~~~g~~l~~L~a~~n~l~-~~~~~p~--p~nl~~~dis~n-~l~~lp~wi~~~~  264 (1081)
T KOG0618|consen  193 LDLSNLANLEVLHCERN-QLSEL---EISGPSLTALYADHNPLT-TLDVHPV--PLNLQYLDISHN-NLSNLPEWIGACA  264 (1081)
T ss_pred             hhhhhccchhhhhhhhc-ccceE---EecCcchheeeeccCcce-eeccccc--cccceeeecchh-hhhcchHHHHhcc
Confidence            44556777777766643 22221   112266777777664322 22  223  567888888773 6666764 33478


Q ss_pred             CccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCc-ceeee----
Q 019416          111 TLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGE-SSKIR----  182 (341)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~-~l~l~----  182 (341)
                      +|+.+....+. +..    +|..+.  .+|+.|.... +.+..+|.. ...++|++|++..+ ++..+|. .+.+-    
T Consensus       265 nle~l~~n~N~-l~~----lp~ri~~~~~L~~l~~~~-nel~yip~~le~~~sL~tLdL~~N-~L~~lp~~~l~v~~~~l  337 (1081)
T KOG0618|consen  265 NLEALNANHNR-LVA----LPLRISRITSLVSLSAAY-NELEYIPPFLEGLKSLRTLDLQSN-NLPSLPDNFLAVLNASL  337 (1081)
T ss_pred             cceEecccchh-HHh----hHHHHhhhhhHHHHHhhh-hhhhhCCCcccccceeeeeeehhc-cccccchHHHhhhhHHH
Confidence            88888887765 344    665555  7777777765 466666665 33567888888763 4555554 00000    


Q ss_pred             ---C--CCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcc
Q 019416          183 ---N--CDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLT  256 (341)
Q Consensus       183 ---~--~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~  256 (341)
                         +  +-.+..      +.....+...-|+.|++.++.-....-..+.++++|+.|+++++ .+..+|... ..++.|+
T Consensus       338 ~~ln~s~n~l~~------lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyN-rL~~fpas~~~kle~Le  410 (1081)
T KOG0618|consen  338 NTLNVSSNKLST------LPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYN-RLNSFPASKLRKLEELE  410 (1081)
T ss_pred             HHHhhhhccccc------cccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccc-ccccCCHHHHhchHHhH
Confidence               0  000111      00011112334778888875444444456677899999999994 577777633 3357999


Q ss_pred             eEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCC--ccccccccCCCceeEEEEeC
Q 019416          257 SLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLI--PLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       257 ~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~--~~~~~~i~~~~~L~~l~l~~  334 (341)
                      +|++++ ++++.+|+.+..+..|++|...+ +++..+|+....++|+++|++ |++++  ..+.. ..+ ++|++|+++|
T Consensus       411 eL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS-~N~L~~~~l~~~-~p~-p~LkyLdlSG  485 (1081)
T KOG0618|consen  411 ELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLS-CNNLSEVTLPEA-LPS-PNLKYLDLSG  485 (1081)
T ss_pred             HHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecc-cchhhhhhhhhh-CCC-cccceeeccC
Confidence            999999 57999999999999999998755 688899976778999999995 45565  22211 122 8999999998


Q ss_pred             C
Q 019416          335 G  335 (341)
Q Consensus       335 ~  335 (341)
                      |
T Consensus       486 N  486 (1081)
T KOG0618|consen  486 N  486 (1081)
T ss_pred             C
Confidence            3

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.94  E-value=2.1e-11  Score=108.72  Aligned_cols=256  Identities=18%  Similarity=0.241  Sum_probs=121.3

Q ss_pred             CCCCCcCeEEcCCCCCCcccc-ccc-cCCCCccEEeccCCCCchhh-----hcccCCCCcceEeeecCCCCccccCCC--
Q 019416           37 RTGETLESLEIDNLSSLASFL-RSE-LAATTVKQLKINKCPDLEVL-----LHRMAYTSLEYLEFSSCLFFSNSKQDY--  107 (341)
Q Consensus        37 ~~~~~L~~L~l~~~~~~~~~~-~~~-~~l~~L~~L~l~~~~~l~~~-----~~~~~l~~L~~L~l~~~~~l~~~~~~~--  107 (341)
                      ..+|++++|.+.+|..++.-. .++ ..+++|+.|++..|..+.+.     .+.  +++|++|++++|+.+..-....  
T Consensus       161 ~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~g--C~kL~~lNlSwc~qi~~~gv~~~~  238 (483)
T KOG4341|consen  161 SNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEG--CRKLKYLNLSWCPQISGNGVQALQ  238 (483)
T ss_pred             hhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHh--hhhHHHhhhccCchhhcCcchHHh
Confidence            457777777777776555321 111 23677777777777766655     456  7777777777776665421111  


Q ss_pred             -CCCCccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCC---CCccccceEEeeccCCccccCcceeeeC
Q 019416          108 -FPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPIN---QLPATLRHLRIVNCMNLKSLGESSKIRN  183 (341)
Q Consensus       108 -~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~l~~~~~~l~l~~  183 (341)
                       -...++.+...||...+.-.-.......+-+..+++..|..++.....   .....|+.+..++|.++...+..-    
T Consensus       239 rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~a----  314 (483)
T KOG4341|consen  239 RGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWA----  314 (483)
T ss_pred             ccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHH----
Confidence             134456665566654432100000000033445555556555543321   233455666655555433221100    


Q ss_pred             CCCCCcCCCcccccccccccccccceEeeccCcCCCcccc--cCCCCCCcCeEEeecCCCCcee--cCCCCCCCCcceEe
Q 019416          184 CDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPE--DMHNFTDLNLLSISNCPSLESF--PEGGLPNTSLTSLL  259 (341)
Q Consensus       184 ~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~~L~~L~  259 (341)
                                     +- .++.+|+.+-+.+|..+...-.  .-.+++.|+.+++..|..+..-  -.-...++.|+.+.
T Consensus       315 ---------------Lg-~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~ls  378 (483)
T KOG4341|consen  315 ---------------LG-QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLS  378 (483)
T ss_pred             ---------------Hh-cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCC
Confidence                           00 0223466666666655443311  1123456666666655433221  11112234566665


Q ss_pred             cccCcccccc-----hhhhccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCCCCC
Q 019416          260 ISECENLMSL-----PHQIHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLI  314 (341)
Q Consensus       260 l~~~~~l~~l-----~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~  314 (341)
                      +++|..++.-     ......+..|+.+.+.+|+.+.+-...  ..-++|+.+++.+|..+.
T Consensus       379 lshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  379 LSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             hhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence            6555433321     222234445555556555554322211  123455556666655554

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.93  E-value=5.7e-11  Score=105.94  Aligned_cols=267  Identities=17%  Similarity=0.245  Sum_probs=162.2

Q ss_pred             CCccEEeccCCCCchhh-----hcccCCCCcceEeeecCCCCccccC---CCCCCCccEEEEeCCCChHHH-HHHhhhhc
Q 019416           64 TTVKQLKINKCPDLEVL-----LHRMAYTSLEYLEFSSCLFFSNSKQ---DYFPTTLKRLKICDCTNAELI-LKVLMDQK  134 (341)
Q Consensus        64 ~~L~~L~l~~~~~l~~~-----~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~  134 (341)
                      --|++|.++||..+..-     ...  +++++.|.+.+|..+++..-   ..+++.|+++.+..|..++.. .+.+.++.
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~--CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC  215 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASN--CPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC  215 (483)
T ss_pred             cccccccccccccCCcchhhHHhhh--CCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence            35677777777654433     556  77777777777765544321   334777888888777766542 11122222


Q ss_pred             ccccceEeecCCCCccccCCC---CCccccceEEeeccCCcccc---------Cc--ceeeeCCCCCCc-CCCccccccc
Q 019416          135 GLALESLEVDGCSSLFSLPIN---QLPATLRHLRIVNCMNLKSL---------GE--SSKIRNCDSVVG-PEGESSLENM  199 (341)
Q Consensus       135 ~~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~l~~~---------~~--~l~l~~~~~l~~-~~~~~~~~~l  199 (341)
                       ++|+++++++|+.++.-...   .....++.+...+|..++.-         +.  .+++..|..+++ ....     +
T Consensus       216 -~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~-----i  289 (483)
T KOG4341|consen  216 -RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWL-----I  289 (483)
T ss_pred             -hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHH-----H
Confidence             78888888888777662221   22234555555555433210         00  333445554554 1110     1


Q ss_pred             ccccccccceEeeccCcCCCcccc-c-CCCCCCcCeEEeecCCCCcee--cCCCCCCCCcceEecccCcccc--cchhhh
Q 019416          200 TSSHTLELRELEIWDCLELEFLPE-D-MHNFTDLNLLSISNCPSLESF--PEGGLPNTSLTSLLISECENLM--SLPHQI  273 (341)
Q Consensus       200 ~~~~~~~L~~L~l~~~~~l~~l~~-~-~~~l~~L~~L~l~~c~~l~~~--~~~~~~~~~L~~L~l~~~~~l~--~l~~~l  273 (341)
                       .-.+++|+.++.++|..+...+- . -.+.++|+.|-++.|..+...  ....-.++.|+.+++.+|..+.  ++....
T Consensus       290 -~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls  368 (483)
T KOG4341|consen  290 -ACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLS  368 (483)
T ss_pred             -hhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhc
Confidence             11355688888888876544321 1 245688999999988765432  1122234688888888875443  233344


Q ss_pred             ccCCCcCeEeecCCCCCccCCCC------CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeCCCCCCC
Q 019416          274 HKATSLQDLSVSGCPSLMSFPHG------GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLPVLE  340 (341)
Q Consensus       274 ~~l~~L~~L~l~~c~~l~~~~~~------~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C~~l~  340 (341)
                      .+++.|+.+.+++|..+++....      .....|+++.+.+|+..+....--+.+++.|+.+++.+ |.++.
T Consensus       369 ~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~-~q~vt  440 (483)
T KOG4341|consen  369 RNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID-CQDVT  440 (483)
T ss_pred             cCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec-hhhhh
Confidence            67899999999999887655221      12468999999999999832111257889999999999 98764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.84  E-value=1.4e-09  Score=109.66  Aligned_cols=81  Identities=19%  Similarity=0.205  Sum_probs=44.5

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCCC-CCC
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDYF-PTT  111 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~~~  111 (341)
                      |..+|.|++||+++|..+..+|.+++.+-+||.|++++ +.++++   ++.  +++|.+|++..+..+..++.... +.+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~--Lk~L~~Lnl~~~~~l~~~~~i~~~L~~  643 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGN--LKKLIYLNLEVTGRLESIPGILLELQS  643 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHH--HHhhheeccccccccccccchhhhccc
Confidence            44466666666665555555666555566666666655 445444   555  55666666655444444433322 555


Q ss_pred             ccEEEEeC
Q 019416          112 LKRLKICD  119 (341)
Q Consensus       112 L~~L~l~~  119 (341)
                      ||+|.+.+
T Consensus       644 Lr~L~l~~  651 (889)
T KOG4658|consen  644 LRVLRLPR  651 (889)
T ss_pred             ccEEEeec
Confidence            66655544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.69  E-value=6.9e-10  Score=87.91  Aligned_cols=126  Identities=14%  Similarity=0.098  Sum_probs=87.2

Q ss_pred             cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccC-CCCC
Q 019416           34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFP  109 (341)
Q Consensus        34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~  109 (341)
                      .++..+.+++.|.++. ++++.+|+.+..+.+|+.|++++ ++++++   +.+  +++|+.|+++- +.+..+|. .+.+
T Consensus        27 ~gLf~~s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~iss--l~klr~lnvgm-nrl~~lprgfgs~  101 (264)
T KOG0617|consen   27 PGLFNMSNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISS--LPKLRILNVGM-NRLNILPRGFGSF  101 (264)
T ss_pred             ccccchhhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhh--chhhhheecch-hhhhcCccccCCC
Confidence            4566788889999997 47788888888899999999987 678877   888  99999999863 56666765 4558


Q ss_pred             CCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeec
Q 019416          110 TTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVN  168 (341)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~  168 (341)
                      |.|+.|++.++..-+..   +|..++  ..|.-|++++ +....+|.. +.+++|+.|.+.+
T Consensus       102 p~levldltynnl~e~~---lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrd  159 (264)
T KOG0617|consen  102 PALEVLDLTYNNLNENS---LPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRD  159 (264)
T ss_pred             chhhhhhcccccccccc---CCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeecc
Confidence            88999988887533221   555544  5566666655 344445443 3444444444444

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.68  E-value=6.9e-10  Score=87.89  Aligned_cols=148  Identities=26%  Similarity=0.322  Sum_probs=91.6

Q ss_pred             cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeecc
Q 019416          136 LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWD  214 (341)
Q Consensus       136 ~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~  214 (341)
                      .+++.|.++. ++++.+|.. ..+.+|+.|++++. .++.+|..+                      +++++|+.|.+.-
T Consensus        33 s~ITrLtLSH-NKl~~vppnia~l~nlevln~~nn-qie~lp~~i----------------------ssl~klr~lnvgm   88 (264)
T KOG0617|consen   33 SNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSNN-QIEELPTSI----------------------SSLPKLRILNVGM   88 (264)
T ss_pred             hhhhhhhccc-CceeecCCcHHHhhhhhhhhcccc-hhhhcChhh----------------------hhchhhhheecch
Confidence            4455555555 455555554 34456666666552 344443211                      2444677666653


Q ss_pred             CcCCCcccccCCCCCCcCeEEeecCCCC-ceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccC
Q 019416          215 CLELEFLPEDMHNFTDLNLLSISNCPSL-ESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSF  293 (341)
Q Consensus       215 ~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~  293 (341)
                       +.+..+|.+|+++|.|+.|++.++.-- ..+|...+.++.|+-|++.+ +.++.+|..++.+++|+.|.+++. .+-++
T Consensus        89 -nrl~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrdn-dll~l  165 (264)
T KOG0617|consen   89 -NRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRDN-DLLSL  165 (264)
T ss_pred             -hhhhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeeccC-chhhC
Confidence             456667888888888888888775422 23444445556777777777 467778877888888888888774 45556


Q ss_pred             CCC-CCCCCccEEEeecC
Q 019416          294 PHG-GLPPNLISLGIIDC  310 (341)
Q Consensus       294 ~~~-~~~~~L~~L~l~~c  310 (341)
                      |.. +-+++|++|++.++
T Consensus       166 pkeig~lt~lrelhiqgn  183 (264)
T KOG0617|consen  166 PKEIGDLTRLRELHIQGN  183 (264)
T ss_pred             cHHHHHHHHHHHHhcccc
Confidence            654 55667777777664

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.64  E-value=1.6e-07  Score=85.86  Aligned_cols=32  Identities=34%  Similarity=0.641  Sum_probs=18.2

Q ss_pred             CCcCeEeecCCCCCccCCCCCCCCCccEEEeecC
Q 019416          277 TSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDC  310 (341)
Q Consensus       277 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c  310 (341)
                      ++|++|++.+|..+. +| ..+|.+|+.|++..+
T Consensus       156 sSLk~L~Is~c~~i~-LP-~~LP~SLk~L~ls~n  187 (426)
T PRK15386        156 PSLKTLSLTGCSNII-LP-EKLPESLQSITLHIE  187 (426)
T ss_pred             CcccEEEecCCCccc-Cc-ccccccCcEEEeccc
Confidence            356777776665432 22 235666777776543

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.58  E-value=4e-07  Score=83.29  Aligned_cols=137  Identities=24%  Similarity=0.361  Sum_probs=81.2

Q ss_pred             hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccc
Q 019416           81 LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPAT  160 (341)
Q Consensus        81 ~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~  160 (341)
                      +..  +.++..|++++| .+..+|  .++++|++|.+++|..+..    +|..+-++|++|.+.+|..+..+|     ++
T Consensus        48 ~~~--~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLts----LP~~LP~nLe~L~Ls~Cs~L~sLP-----~s  113 (426)
T PRK15386         48 IEE--ARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTT----LPGSIPEGLEKLTVCHCPEISGLP-----ES  113 (426)
T ss_pred             HHH--hcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCccc----CCchhhhhhhheEccCcccccccc-----cc
Confidence            556  778888888877 677777  3567788888888887766    665443678888888876665444     46


Q ss_pred             cceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCC--CcccccCCCCCCcCeEEeec
Q 019416          161 LRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLEL--EFLPEDMHNFTDLNLLSISN  238 (341)
Q Consensus       161 L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l~~  238 (341)
                      |++|++.. .....++                     .+|.+    |+.|.+.++...  ..++..+  .++|++|++++
T Consensus       114 Le~L~L~~-n~~~~L~---------------------~LPss----Lk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~  165 (426)
T PRK15386        114 VRSLEIKG-SATDSIK---------------------NVPNG----LTSLSINSYNPENQARIDNLI--SPSLKTLSLTG  165 (426)
T ss_pred             cceEEeCC-CCCcccc---------------------cCcch----Hhheecccccccccccccccc--CCcccEEEecC
Confidence            77777653 2221111                     15544    666666443211  1111111  24677777777


Q ss_pred             CCCCceecCCCCCCCCcceEeccc
Q 019416          239 CPSLESFPEGGLPNTSLTSLLISE  262 (341)
Q Consensus       239 c~~l~~~~~~~~~~~~L~~L~l~~  262 (341)
                      |..+. +| ..+| .+|++|+++.
T Consensus       166 c~~i~-LP-~~LP-~SLk~L~ls~  186 (426)
T PRK15386        166 CSNII-LP-EKLP-ESLQSITLHI  186 (426)
T ss_pred             CCccc-Cc-cccc-ccCcEEEecc
Confidence            65432 22 2234 4777777654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.50  E-value=5.6e-08  Score=87.90  Aligned_cols=83  Identities=14%  Similarity=0.080  Sum_probs=39.7

Q ss_pred             CCCCCcCeEEcCCCCCC----ccccccccCCCCccEEeccCCCCc------hhh---hcccCCCCcceEeeecCCCCccc
Q 019416           37 RTGETLESLEIDNLSSL----ASFLRSELAATTVKQLKINKCPDL------EVL---LHRMAYTSLEYLEFSSCLFFSNS  103 (341)
Q Consensus        37 ~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~l------~~~---~~~~~l~~L~~L~l~~~~~l~~~  103 (341)
                      ..++.|++|+++++...    ..++......++|+.++++++..-      ..+   +..  +++|+.|++++|......
T Consensus        20 ~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          20 PKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK--GCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh--cCceeEEEccCCCCChhH
Confidence            34555777777765421    112333334566777777664221      111   445  566777777665332111


Q ss_pred             cC-CCCC---CCccEEEEeCCC
Q 019416          104 KQ-DYFP---TTLKRLKICDCT  121 (341)
Q Consensus       104 ~~-~~~~---~~L~~L~l~~~~  121 (341)
                      +. ...+   ++|++|++++|.
T Consensus        98 ~~~~~~l~~~~~L~~L~ls~~~  119 (319)
T cd00116          98 CGVLESLLRSSSLQELKLNNNG  119 (319)
T ss_pred             HHHHHHHhccCcccEEEeeCCc
Confidence            11 0111   336666666664

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.43  E-value=2.3e-07  Score=83.87  Aligned_cols=246  Identities=16%  Similarity=0.079  Sum_probs=136.2

Q ss_pred             ccCCCCccEEeccCCCCc----hhh---hcccCCCCcceEeeecCCCCcccc--------CCCCCCCccEEEEeCCCChH
Q 019416           60 ELAATTVKQLKINKCPDL----EVL---LHRMAYTSLEYLEFSSCLFFSNSK--------QDYFPTTLKRLKICDCTNAE  124 (341)
Q Consensus        60 ~~~l~~L~~L~l~~~~~l----~~~---~~~~~l~~L~~L~l~~~~~l~~~~--------~~~~~~~L~~L~l~~~~~~~  124 (341)
                      +..+.+|++|++++|.--    ..+   +..  .++|+.++++++. +...+        ....+++|++|++++|....
T Consensus        19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~--~~~l~~l~l~~~~-~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~   95 (319)
T cd00116          19 LPKLLCLQVLRLEGNTLGEEAAKALASALRP--QPSLKELCLSLNE-TGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP   95 (319)
T ss_pred             HHHHhhccEEeecCCCCcHHHHHHHHHHHhh--CCCceEEeccccc-cCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence            344677999999996531    122   566  7789999998753 33111        11226799999999987543


Q ss_pred             HHHHHhhhhcc-----cccceEeecCCCCccc----cCCC-CCc-cccceEEeeccCCcccc-CcceeeeCCCCCCcCCC
Q 019416          125 LILKVLMDQKG-----LALESLEVDGCSSLFS----LPIN-QLP-ATLRHLRIVNCMNLKSL-GESSKIRNCDSVVGPEG  192 (341)
Q Consensus       125 ~~~~~~~~~~~-----~~L~~L~l~~~~~l~~----l~~~-~~~-~~L~~L~l~~~~~l~~~-~~~l~l~~~~~l~~~~~  192 (341)
                      .    .+..+.     ++|++|++++|..-..    +... ... ++|+.|++++|. ++.- ...+             
T Consensus        96 ~----~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~-------------  157 (319)
T cd00116          96 D----GCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEAL-------------  157 (319)
T ss_pred             h----HHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHH-------------
Confidence            3    222222     3499999988643210    1011 122 678888888764 2200 0000             


Q ss_pred             cccccccccccccccceEeeccCcCC----CcccccCCCCCCcCeEEeecCCCC----ceecCCCCCCCCcceEecccCc
Q 019416          193 ESSLENMTSSHTLELRELEIWDCLEL----EFLPEDMHNFTDLNLLSISNCPSL----ESFPEGGLPNTSLTSLLISECE  264 (341)
Q Consensus       193 ~~~~~~l~~~~~~~L~~L~l~~~~~l----~~l~~~~~~l~~L~~L~l~~c~~l----~~~~~~~~~~~~L~~L~l~~~~  264 (341)
                         ...+.  .+++|++|++.+|.-.    ..++..+...++|+.|++++|.--    ..+......+++|++|++++|.
T Consensus       158 ---~~~~~--~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~  232 (319)
T cd00116         158 ---AKALR--ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNN  232 (319)
T ss_pred             ---HHHHH--hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCc
Confidence               00011  3346889998886432    123334445578999999887421    1111111224689999998864


Q ss_pred             ccccc-----hhhh-ccCCCcCeEeecCCCCCcc-----CCCC-CCCCCccEEEeecCCCCCc----cccccccCC-Cce
Q 019416          265 NLMSL-----PHQI-HKATSLQDLSVSGCPSLMS-----FPHG-GLPPNLISLGIIDCENLIP----LSQWELHKL-KHL  327 (341)
Q Consensus       265 ~l~~l-----~~~l-~~l~~L~~L~l~~c~~l~~-----~~~~-~~~~~L~~L~l~~c~~~~~----~~~~~i~~~-~~L  327 (341)
                       ++..     ...+ ...+.|++|++.+| .+++     +... ...++|+.++++++..-..    ... .+... .+|
T Consensus       233 -l~~~~~~~l~~~~~~~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~-~~~~~~~~~  309 (319)
T cd00116         233 -LTDAGAAALASALLSPNISLLTLSLSCN-DITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAE-SLLEPGNEL  309 (319)
T ss_pred             -CchHHHHHHHHHHhccCCCceEEEccCC-CCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHH-HHhhcCCch
Confidence             5421     1111 12478899999876 3431     1111 1236888888888754431    111 12333 688


Q ss_pred             eEEEEeC
Q 019416          328 NKYTILG  334 (341)
Q Consensus       328 ~~l~l~~  334 (341)
                      +++++.+
T Consensus       310 ~~~~~~~  316 (319)
T cd00116         310 ESLWVKD  316 (319)
T ss_pred             hhcccCC
Confidence            8888776

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.42  E-value=2.2e-08  Score=89.17  Aligned_cols=86  Identities=16%  Similarity=0.310  Sum_probs=59.8

Q ss_pred             ccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCCCC--
Q 019416          223 EDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHGGL--  298 (341)
Q Consensus       223 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~--  298 (341)
                      ..|..+++|+.|+++++ .++.+.++.+ ....++.|.+.+ ++++.+.. .++++..|+.|++.+ ++|+.+..+.|  
T Consensus       268 ~cf~~L~~L~~lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~aF~~  344 (498)
T KOG4237|consen  268 KCFKKLPNLRKLNLSNN-KITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGAFQT  344 (498)
T ss_pred             HHHhhcccceEeccCCC-ccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEecccccc
Confidence            34677888888888884 4555555332 245788888887 46877765 467888888888877 57777766544  


Q ss_pred             CCCccEEEeecCC
Q 019416          299 PPNLISLGIIDCE  311 (341)
Q Consensus       299 ~~~L~~L~l~~c~  311 (341)
                      ..+|.+|.+..++
T Consensus       345 ~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  345 LFSLSTLNLLSNP  357 (498)
T ss_pred             cceeeeeehccCc
Confidence            4578888776643

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=98.38  E-value=6.4e-09  Score=92.45  Aligned_cols=259  Identities=15%  Similarity=0.164  Sum_probs=134.7

Q ss_pred             CCCCCCCCCCchhhhhhcccCCC--ccc-cCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh---
Q 019416            8 PFDLEPQAPVPKNFLALALFPDE--DKI-LGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL---   80 (341)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~---   80 (341)
                      ..-+..+..+|....++.+-.+.  .++ ..|+.+++|++|||++| .++.+ |..+.++++|.+|.+.+++++.++   
T Consensus        56 ~GL~eVP~~LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~  134 (498)
T KOG4237|consen   56 KGLTEVPANLPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVLYGNNKITDLPKG  134 (498)
T ss_pred             CCcccCcccCCCcceEEEeccCCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHhhcCCchhhhhhh
Confidence            33445555566655555553332  111 24667788888888875 34444 666777788888877777777766   


Q ss_pred             -hcccCCCCcceEeeecCCCCccccCCC--CCCCccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCcc----
Q 019416           81 -LHRMAYTSLEYLEFSSCLFFSNSKQDY--FPTTLKRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLF----  150 (341)
Q Consensus        81 -~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~----  150 (341)
                       |++  +.+|+-|.+.-+ .+..+....  -++++..|.++++. +..    ++.+..   .+++.+.+...+.+-    
T Consensus       135 ~F~g--L~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~-~q~----i~~~tf~~l~~i~tlhlA~np~icdCnL  206 (498)
T KOG4237|consen  135 AFGG--LSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNK-IQS----ICKGTFQGLAAIKTLHLAQNPFICDCNL  206 (498)
T ss_pred             Hhhh--HHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchh-hhh----hccccccchhccchHhhhcCcccccccc
Confidence             666  666666666332 344443322  25666666776653 344    333222   444444333222110    


Q ss_pred             --------ccCCC-CCccccceEEeecc-----------CCccccCcceeeeCC-CCCCcCCCcccccccccccccccce
Q 019416          151 --------SLPIN-QLPATLRHLRIVNC-----------MNLKSLGESSKIRNC-DSVVGPEGESSLENMTSSHTLELRE  209 (341)
Q Consensus       151 --------~l~~~-~~~~~L~~L~l~~~-----------~~l~~~~~~l~l~~~-~~l~~~~~~~~~~~l~~~~~~~L~~  209 (341)
                              ..+.. +...-.....+.+.           ...+.++..+. +.| +....|..  .|+     .+++|++
T Consensus       207 ~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~-~~d~~d~~cP~~--cf~-----~L~~L~~  278 (498)
T KOG4237|consen  207 PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLS-SEDFPDSICPAK--CFK-----KLPNLRK  278 (498)
T ss_pred             chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhc-cccCcCCcChHH--HHh-----hcccceE
Confidence                    00000 00000000000000           00111111110 111 00000111  122     3447999


Q ss_pred             EeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEecccCcccccc-hhhhccCCCcCeEeecC
Q 019416          210 LEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISECENLMSL-PHQIHKATSLQDLSVSG  286 (341)
Q Consensus       210 L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~  286 (341)
                      +.++++ +++.+ +.+|.+...+++|.+..+ .++.+..+.+ ....|+.|++.++ +++.+ |..++.+.+|.+|.+-.
T Consensus       279 lnlsnN-~i~~i~~~aFe~~a~l~eL~L~~N-~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l~~l~l~~  355 (498)
T KOG4237|consen  279 LNLSNN-KITRIEDGAFEGAAELQELYLTRN-KLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSLSTLNLLS  355 (498)
T ss_pred             eccCCC-ccchhhhhhhcchhhhhhhhcCcc-hHHHHHHHhhhccccceeeeecCC-eeEEEecccccccceeeeeehcc
Confidence            999985 44444 678888899999998874 4555544322 2458899999984 67766 44677777888888754

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.38  E-value=2.4e-07  Score=93.72  Aligned_cols=269  Identities=20%  Similarity=0.143  Sum_probs=148.4

Q ss_pred             CCCCCcCeEEcCCCCC-Ccccccc-ccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccC-CCCCC
Q 019416           37 RTGETLESLEIDNLSS-LASFLRS-ELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPT  110 (341)
Q Consensus        37 ~~~~~L~~L~l~~~~~-~~~~~~~-~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~  110 (341)
                      ..+++|++|-+.++.. +..++.. +..++.|++|++++|..+..+   ++.  +.+|++|+++++ .+..+|. .+.+.
T Consensus       542 ~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~--Li~LryL~L~~t-~I~~LP~~l~~Lk  618 (889)
T KOG4658|consen  542 SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGE--LVHLRYLDLSDT-GISHLPSGLGNLK  618 (889)
T ss_pred             CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhh--hhhhhcccccCC-CccccchHHHHHH
Confidence            4566788888887642 4444333 455788888888877666665   777  888888888874 6777765 34577


Q ss_pred             CccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCC-CccccC--CCCCccccceEEeeccCCccccCcceeeeCCC
Q 019416          111 TLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCS-SLFSLP--INQLPATLRHLRIVNCMNLKSLGESSKIRNCD  185 (341)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~-~l~~l~--~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~  185 (341)
                      .|.+|++..+..+..    +|....  ++|++|.+-.-. ..+..-  ....+.+|+.+.+..... ..+-.        
T Consensus       619 ~L~~Lnl~~~~~l~~----~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~-~~~e~--------  685 (889)
T KOG4658|consen  619 KLIYLNLEVTGRLES----IPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV-LLLED--------  685 (889)
T ss_pred             hhheecccccccccc----ccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh-HhHhh--------
Confidence            888888877665554    332222  777777764311 111100  012334444444433221 00000        


Q ss_pred             CCCcCCCcccccccccccccccc----eEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC----CC-CC-CCCc
Q 019416          186 SVVGPEGESSLENMTSSHTLELR----ELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE----GG-LP-NTSL  255 (341)
Q Consensus       186 ~l~~~~~~~~~~~l~~~~~~~L~----~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~----~~-~~-~~~L  255 (341)
                                   +-  .+++|+    .+.+.+ ......+..+..+.+|+.|.+.+|...+....    .. .. ++++
T Consensus       686 -------------l~--~~~~L~~~~~~l~~~~-~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l  749 (889)
T KOG4658|consen  686 -------------LL--GMTRLRSLLQSLSIEG-CSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNL  749 (889)
T ss_pred             -------------hh--hhHHHHHHhHhhhhcc-cccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHH
Confidence                         00  111222    233322 22334455667788999999999876432211    11 11 3467


Q ss_pred             ceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCC----------CCccEE-EeecCCCCCccccccccC
Q 019416          256 TSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLP----------PNLISL-GIIDCENLIPLSQWELHK  323 (341)
Q Consensus       256 ~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~----------~~L~~L-~l~~c~~~~~~~~~~i~~  323 (341)
                      ..+.+.+|...+.+. ...-.++|+.|.+..|..++++... ...          ..++.+ .+.+...+..+ .|.=-.
T Consensus       750 ~~~~~~~~~~~r~l~-~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i-~~~~l~  827 (889)
T KOG4658|consen  750 SKVSILNCHMLRDLT-WLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQL-YWLPLS  827 (889)
T ss_pred             HHHHhhccccccccc-hhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCcee-EecccC
Confidence            777777777666543 3345689999999999877655432 112          233333 23333333211 000012


Q ss_pred             CCceeEEEEeCCCCCCC
Q 019416          324 LKHLNKYTILGGLPVLE  340 (341)
Q Consensus       324 ~~~L~~l~l~~~C~~l~  340 (341)
                      ...++.+.+.. ||+++
T Consensus       828 ~~~l~~~~ve~-~p~l~  843 (889)
T KOG4658|consen  828 FLKLEELIVEE-CPKLG  843 (889)
T ss_pred             ccchhheehhc-Ccccc
Confidence            34588888888 88875

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=7.2e-07  Score=80.63  Aligned_cols=126  Identities=17%  Similarity=0.147  Sum_probs=82.2

Q ss_pred             CCCCcCeEEcCCCCCCccccc--cccCCCCccEEeccCCCCchhh------hcccCCCCcceEeeecCCCCccccC--CC
Q 019416           38 TGETLESLEIDNLSSLASFLR--SELAATTVKQLKINKCPDLEVL------LHRMAYTSLEYLEFSSCLFFSNSKQ--DY  107 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~l~~~------~~~~~l~~L~~L~l~~~~~l~~~~~--~~  107 (341)
                      .+.+|+...|.+++ +...+.  -...|++++.|++++ +-+..+      .+.  +++|+.|+++.+....-...  ..
T Consensus       119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eq--Lp~Le~LNls~Nrl~~~~~s~~~~  194 (505)
T KOG3207|consen  119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQ--LPSLENLNLSSNRLSNFISSNTTL  194 (505)
T ss_pred             hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHh--cccchhcccccccccCCccccchh
Confidence            58889999999763 333332  244689999999998 444443      788  99999999998644332222  33


Q ss_pred             CCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCcc-ccCCCCCccccceEEeeccC
Q 019416          108 FPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLF-SLPINQLPATLRHLRIVNCM  170 (341)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~-~l~~~~~~~~L~~L~l~~~~  170 (341)
                      .++.|+.|.++.|.....   .+.....  |+|+.|++.++..+. .......+..|+.|++++.+
T Consensus       195 ~l~~lK~L~l~~CGls~k---~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  195 LLSHLKQLVLNSCGLSWK---DVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             hhhhhheEEeccCCCCHH---HHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence            589999999999974321   1211111  999999998854222 11122445677777777654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=5.8e-08  Score=83.55  Aligned_cols=176  Identities=19%  Similarity=0.253  Sum_probs=89.8

Q ss_pred             cCeEEcCCCCCCcc--ccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC---CCCCCCc
Q 019416           42 LESLEIDNLSSLAS--FLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ---DYFPTTL  112 (341)
Q Consensus        42 L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L  112 (341)
                      |++|||++. .++.  +-....+|.+|+.|.+.| ..+.+-    +.+  -.+|+.++++.|..+.....   +..+..|
T Consensus       187 lq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg-~~LdD~I~~~iAk--N~~L~~lnlsm~sG~t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  187 LQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEG-LRLDDPIVNTIAK--NSNLVRLNLSMCSGFTENALQLLLSSCSRL  262 (419)
T ss_pred             hHHhhcchh-heeHHHHHHHHHHHHhhhhccccc-cccCcHHHHHHhc--cccceeeccccccccchhHHHHHHHhhhhH
Confidence            666666642 2221  111234456666666665 333332    445  56666666666655554432   2235666


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCC
Q 019416          113 KRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEG  192 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~  192 (341)
                      ..|++++|......-..+-.+++++|+.|+++||...-....                 +..                  
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh-----------------~~t------------------  307 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSH-----------------LST------------------  307 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhH-----------------HHH------------------
Confidence            666666666544321111222225556666655432211110                 000                  


Q ss_pred             cccccccccccccccceEeeccCcCCCc-ccccCCCCCCcCeEEeecCCCCc--eecC-CCCCCCCcceEecccCcc
Q 019416          193 ESSLENMTSSHTLELRELEIWDCLELEF-LPEDMHNFTDLNLLSISNCPSLE--SFPE-GGLPNTSLTSLLISECEN  265 (341)
Q Consensus       193 ~~~~~~l~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~--~~~~-~~~~~~~L~~L~l~~~~~  265 (341)
                            + ...++++..|++++|..++. ....+..++.|++|+++.|..+.  .+-+ ..  .|+|.+|++.+|-.
T Consensus       308 ------L-~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s--~psl~yLdv~g~vs  375 (419)
T KOG2120|consen  308 ------L-VRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNS--KPSLVYLDVFGCVS  375 (419)
T ss_pred             ------H-HHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeecc--CcceEEEEeccccC
Confidence                  0 01334577777777766644 22344567888888888886542  1111 22  25888888888753

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.14  E-value=1.4e-06  Score=71.06  Aligned_cols=120  Identities=19%  Similarity=0.247  Sum_probs=47.0

Q ss_pred             ccceEeeccCcCCCcccccCC-CCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhh-ccCCCcCeEe
Q 019416          206 ELRELEIWDCLELEFLPEDMH-NFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQI-HKATSLQDLS  283 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l-~~l~~L~~L~  283 (341)
                      +++.|++.++ .+..+ +.+. .+.+|+.|++++| .++.++.. -.+++|++|+++++ .++++.+++ ..+++|++|.
T Consensus        20 ~~~~L~L~~n-~I~~I-e~L~~~l~~L~~L~Ls~N-~I~~l~~l-~~L~~L~~L~L~~N-~I~~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGN-QISTI-ENLGATLDKLEVLDLSNN-QITKLEGL-PGLPRLKTLDLSNN-RISSISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS---S--TT-----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             cccccccccc-ccccc-cchhhhhcCCCEEECCCC-CCccccCc-cChhhhhhcccCCC-CCCccccchHHhCCcCCEEE
Confidence            4788888885 33444 3444 4678999999986 45555432 22469999999984 688886655 4689999999


Q ss_pred             ecCCCCCccCCCC---CCCCCccEEEeecCCCCC--ccccccccCCCceeEEE
Q 019416          284 VSGCPSLMSFPHG---GLPPNLISLGIIDCENLI--PLSQWELHKLKHLNKYT  331 (341)
Q Consensus       284 l~~c~~l~~~~~~---~~~~~L~~L~l~~c~~~~--~~~~~~i~~~~~L~~l~  331 (341)
                      +++ +.+.++..-   ..+++|++|++.+++...  ..-.+.+..+++|+.|+
T Consensus        95 L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   95 LSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             -TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEET
T ss_pred             CcC-CcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeC
Confidence            977 677777653   236889999998887554  22233567778888875

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=1.3e-06  Score=78.92  Aligned_cols=81  Identities=12%  Similarity=0.138  Sum_probs=34.5

Q ss_pred             CCCcceEeeecCCCCccccC---CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC--CCc
Q 019416           86 YTSLEYLEFSSCLFFSNSKQ---DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLP  158 (341)
Q Consensus        86 l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~  158 (341)
                      +.+|+.+.+.++ .+...+.   ...+++++.|+++++- +..+ ..+-....  |+|+.|+++.+...-.....  ..+
T Consensus       120 ~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw-~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l  196 (505)
T KOG3207|consen  120 LKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNL-FHNW-FPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLL  196 (505)
T ss_pred             HHhhhheeecCc-cccccchhhhhhhCCcceeecchhhh-HHhH-HHHHHHHHhcccchhcccccccccCCccccchhhh
Confidence            445555555543 3333332   1125666666666542 1110 00111111  66666666552221111111  234


Q ss_pred             cccceEEeecc
Q 019416          159 ATLRHLRIVNC  169 (341)
Q Consensus       159 ~~L~~L~l~~~  169 (341)
                      ++|+.|.+++|
T Consensus       197 ~~lK~L~l~~C  207 (505)
T KOG3207|consen  197 SHLKQLVLNSC  207 (505)
T ss_pred             hhhheEEeccC
Confidence            55666666655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.94  E-value=9e-06  Score=66.41  Aligned_cols=100  Identities=17%  Similarity=0.148  Sum_probs=22.9

Q ss_pred             CCccEEeccCCCCchhh--hc-ccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcccccce
Q 019416           64 TTVKQLKINKCPDLEVL--LH-RMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALES  140 (341)
Q Consensus        64 ~~L~~L~l~~~~~l~~~--~~-~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~  140 (341)
                      .++++|++.+ +.+..+  ++ .  +.+|+.|++++| .+..+.....++.|+.|++++|. +..+.+.+...+ |+|++
T Consensus        19 ~~~~~L~L~~-n~I~~Ie~L~~~--l~~L~~L~Ls~N-~I~~l~~l~~L~~L~~L~L~~N~-I~~i~~~l~~~l-p~L~~   92 (175)
T PF14580_consen   19 VKLRELNLRG-NQISTIENLGAT--LDKLEVLDLSNN-QITKLEGLPGLPRLKTLDLSNNR-ISSISEGLDKNL-PNLQE   92 (175)
T ss_dssp             ------------------S--TT---TT--EEE-TTS---S--TT----TT--EEE--SS----S-CHHHHHH--TT--E
T ss_pred             cccccccccc-cccccccchhhh--hcCCCEEECCCC-CCccccCccChhhhhhcccCCCC-CCccccchHHhC-CcCCE
Confidence            3445555555 233333  22 3  455555555553 45555444445555666655554 222000011111 56666


Q ss_pred             EeecCCCCccccCCC---CCccccceEEeeccC
Q 019416          141 LEVDGCSSLFSLPIN---QLPATLRHLRIVNCM  170 (341)
Q Consensus       141 L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~  170 (341)
                      |++++ +.+..+...   ..+++|+.|++.+++
T Consensus        93 L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   93 LYLSN-NKISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             EE-TT-S---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             EECcC-CcCCChHHhHHHHcCCCcceeeccCCc
Confidence            66654 344443322   234667777766543

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.90  E-value=7e-07  Score=77.02  Aligned_cols=134  Identities=16%  Similarity=0.259  Sum_probs=94.0

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-----hcccCCCCcceEeeecCCCCccccC---CC
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-----LHRMAYTSLEYLEFSSCLFFSNSKQ---DY  107 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~l~~L~~L~l~~~~~l~~~~~---~~  107 (341)
                      +..|++|+.|.+.+..--..+-..+..-.+|+.|+++.|+.+...     +.+  +..|+.|++++|......-.   ..
T Consensus       206 Ls~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~s--cs~L~~LNlsWc~l~~~~Vtv~V~h  283 (419)
T KOG2120|consen  206 LSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSS--CSRLDELNLSWCFLFTEKVTVAVAH  283 (419)
T ss_pred             HHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHh--hhhHhhcCchHhhccchhhhHHHhh
Confidence            457999999999986433333333455589999999999988765     889  99999999999855444321   22


Q ss_pred             CCCCccEEEEeCCCChHHHHH--HhhhhcccccceEeecCCCCccccCC--CCCccccceEEeeccCCc
Q 019416          108 FPTTLKRLKICDCTNAELILK--VLMDQKGLALESLEVDGCSSLFSLPI--NQLPATLRHLRIVNCMNL  172 (341)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~l~~l~~--~~~~~~L~~L~l~~~~~l  172 (341)
                      .-++|+.|+++||..--+...  .+..-. |++.+|++++|..++.--.  ...++.|++|.++.|+.+
T Consensus       284 ise~l~~LNlsG~rrnl~~sh~~tL~~rc-p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  284 ISETLTQLNLSGYRRNLQKSHLSTLVRRC-PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             hchhhhhhhhhhhHhhhhhhHHHHHHHhC-CceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence            358899999999863221000  011111 9999999999988875111  134578999999999865

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.81  E-value=5.1e-06  Score=71.92  Aligned_cols=43  Identities=21%  Similarity=0.026  Sum_probs=23.0

Q ss_pred             chhhhcccCCCCcceEeeecCCCCc---cc-cC-----CCCCCCccEEEEeCCC
Q 019416           77 LEVLLHRMAYTSLEYLEFSSCLFFS---NS-KQ-----DYFPTTLKRLKICDCT  121 (341)
Q Consensus        77 l~~~~~~~~l~~L~~L~l~~~~~l~---~~-~~-----~~~~~~L~~L~l~~~~  121 (341)
                      +.++++.  +..|++|.++......   ++ +.     ...+++|+.+.++.|.
T Consensus       174 ~~hildf--~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~  225 (490)
T KOG1259|consen  174 FSHVLDF--CTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS  225 (490)
T ss_pred             hHHHHHh--hhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc
Confidence            3344666  6777777776543211   11 11     1125777777777765

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.80  E-value=3.1e-05  Score=51.61  Aligned_cols=54  Identities=24%  Similarity=0.389  Sum_probs=40.4

Q ss_pred             CCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecC
Q 019416           40 ETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSC   97 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~   97 (341)
                      |+|++|++++| .++.+|. .+.++++|++|++++ +.+..+    +..  +++|++|++++|
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~--l~~L~~L~l~~N   59 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSN--LPNLRYLDLSNN   59 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTTGTTESEEEETS-SSESEEETTTTTT--STTESEEEETSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcC--CCCCCEEeCcCC
Confidence            57888888876 6667764 466788888888886 556555    777  888888888775

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.71  E-value=4.9e-05  Score=71.00  Aligned_cols=169  Identities=23%  Similarity=0.265  Sum_probs=100.1

Q ss_pred             ccCCCCccEEeccCCCCchhh---hcccCCC-CcceEeeecCCCCcccc-CCCCCCCccEEEEeCCCChHHHHHHhhhhc
Q 019416           60 ELAATTVKQLKINKCPDLEVL---LHRMAYT-SLEYLEFSSCLFFSNSK-QDYFPTTLKRLKICDCTNAELILKVLMDQK  134 (341)
Q Consensus        60 ~~~l~~L~~L~l~~~~~l~~~---~~~~~l~-~L~~L~l~~~~~l~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~  134 (341)
                      ...++.++.|.+.+ +.+.++   ...  +. +|+.|+++++ .+..++ ....+++|+.|.+++|. +..    +|...
T Consensus       112 ~~~~~~l~~L~l~~-n~i~~i~~~~~~--~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l~~N~-l~~----l~~~~  182 (394)
T COG4886         112 LLELTNLTSLDLDN-NNITDIPPLIGL--LKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDLSFND-LSD----LPKLL  182 (394)
T ss_pred             hhcccceeEEecCC-cccccCcccccc--chhhccccccccc-chhhhhhhhhccccccccccCCch-hhh----hhhhh
Confidence            34456777777776 455555   444  43 7888888763 666663 45667888888888775 444    55544


Q ss_pred             -c-cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEe
Q 019416          135 -G-LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELE  211 (341)
Q Consensus       135 -~-~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~  211 (341)
                       . ++|+.|++++ +.+..++.. ..+..|+++.+++...++.+..                     +  ..+.++..+.
T Consensus       183 ~~~~~L~~L~ls~-N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~---------------------~--~~~~~l~~l~  238 (394)
T COG4886         183 SNLSNLNNLDLSG-NKISDLPPEIELLSALEELDLSNNSIIELLSS---------------------L--SNLKNLSGLE  238 (394)
T ss_pred             hhhhhhhheeccC-CccccCchhhhhhhhhhhhhhcCCcceecchh---------------------h--hhcccccccc
Confidence             2 7778888877 577777765 3455577777776532221110                     0  1222344444


Q ss_pred             eccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCc
Q 019416          212 IWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECE  264 (341)
Q Consensus       212 l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~  264 (341)
                      +.+ ..+..++..+..++.+++|+++++ .+..++. ..+..+++++++++..
T Consensus       239 l~~-n~~~~~~~~~~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~  288 (394)
T COG4886         239 LSN-NKLEDLPESIGNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNS  288 (394)
T ss_pred             cCC-ceeeeccchhccccccceeccccc-ccccccc-ccccCccCEEeccCcc
Confidence            333 333444566677777888888774 3444444 3334578888887743

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.69  E-value=1e-06  Score=82.17  Aligned_cols=166  Identities=20%  Similarity=0.300  Sum_probs=124.7

Q ss_pred             CCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCCCCCCccEE
Q 019416           39 GETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRL  115 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L  115 (341)
                      +..-...+++. +++..+|..+..|..|+.+.++. +.++.+   +..  +..|.+++++.+ .+..+|...+.--|+.|
T Consensus        74 ltdt~~aDlsr-NR~~elp~~~~~f~~Le~liLy~-n~~r~ip~~i~~--L~~lt~l~ls~N-qlS~lp~~lC~lpLkvl  148 (722)
T KOG0532|consen   74 LTDTVFADLSR-NRFSELPEEACAFVSLESLILYH-NCIRTIPEAICN--LEALTFLDLSSN-QLSHLPDGLCDLPLKVL  148 (722)
T ss_pred             ccchhhhhccc-cccccCchHHHHHHHHHHHHHHh-ccceecchhhhh--hhHHHHhhhccc-hhhcCChhhhcCcceeE
Confidence            33445667776 36677787788888888888887 445554   778  888999999874 77778765443449999


Q ss_pred             EEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCcceeeeCCCCCCcCCC
Q 019416          116 KICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEG  192 (341)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~  192 (341)
                      .++.+. ++.    +|..++  ++|..|+.+. +.+..++.. +.+.+|+.|.+... ++.++|.++.            
T Consensus       149 i~sNNk-l~~----lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrRn-~l~~lp~El~------------  209 (722)
T KOG0532|consen  149 IVSNNK-LTS----LPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRRN-HLEDLPEELC------------  209 (722)
T ss_pred             EEecCc-ccc----CCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhhh-hhhhCCHHHh------------
Confidence            999875 666    888888  8899999877 577777765 66778888888874 4556665331            


Q ss_pred             cccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCC
Q 019416          193 ESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCP  240 (341)
Q Consensus       193 ~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~  240 (341)
                           .+|      |.+|+++. +++..+|-.|..+..|++|-+.+++
T Consensus       210 -----~Lp------Li~lDfSc-Nkis~iPv~fr~m~~Lq~l~LenNP  245 (722)
T KOG0532|consen  210 -----SLP------LIRLDFSC-NKISYLPVDFRKMRHLQVLQLENNP  245 (722)
T ss_pred             -----CCc------eeeeeccc-CceeecchhhhhhhhheeeeeccCC
Confidence                 166      88999884 7888999999999999999998864

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.58  E-value=5e-06  Score=79.48  Aligned_cols=36  Identities=22%  Similarity=0.289  Sum_probs=15.4

Q ss_pred             cCeEeecCCCCCccCCCC--CC-CCCccEEEeecCCCCC
Q 019416          279 LQDLSVSGCPSLMSFPHG--GL-PPNLISLGIIDCENLI  314 (341)
Q Consensus       279 L~~L~l~~c~~l~~~~~~--~~-~~~L~~L~l~~c~~~~  314 (341)
                      ++.|+++.|..+..-...  .. ...++.+++.+|....
T Consensus       403 l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~  441 (482)
T KOG1947|consen  403 LRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVIT  441 (482)
T ss_pred             cceEecccCccccccchHHHhhhhhccccCCccCccccc
Confidence            555555555443222111  00 2334555555555444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.55  E-value=1.2e-05  Score=69.59  Aligned_cols=122  Identities=17%  Similarity=0.215  Sum_probs=82.2

Q ss_pred             CCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccC-CCCCCCcc
Q 019416           37 RTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTLK  113 (341)
Q Consensus        37 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~  113 (341)
                      ..-+-|+.+|++++ .++.+..+..-+|.++.|+++. +.+..+  +..  +.+|+.||++++ .+..+.. ...+-+.+
T Consensus       281 dTWq~LtelDLS~N-~I~~iDESvKL~Pkir~L~lS~-N~i~~v~nLa~--L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIK  355 (490)
T KOG1259|consen  281 DTWQELTELDLSGN-LITQIDESVKLAPKLRRLILSQ-NRIRTVQNLAE--LPQLQLLDLSGN-LLAECVGWHLKLGNIK  355 (490)
T ss_pred             chHhhhhhcccccc-chhhhhhhhhhccceeEEeccc-cceeeehhhhh--cccceEeecccc-hhHhhhhhHhhhcCEe
Confidence            34555788888874 5666666666678888888888 455444  777  888888888874 5554433 22367788


Q ss_pred             EEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC---CCccccceEEeeccC
Q 019416          114 RLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN---QLPATLRHLRIVNCM  170 (341)
Q Consensus       114 ~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~  170 (341)
                      +|.+.++. ++.    + ++++  .+|..|++.+ +++..+...   +.+|.|+.+.+.+++
T Consensus       356 tL~La~N~-iE~----L-SGL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  356 TLKLAQNK-IET----L-SGLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             eeehhhhh-Hhh----h-hhhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCC
Confidence            88888864 343    2 2222  7888888887 566665543   567788888887754

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.53  E-value=0.00011  Score=48.99  Aligned_cols=54  Identities=17%  Similarity=0.277  Sum_probs=38.9

Q ss_pred             CCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCC--CCCCccEEEEeCCC
Q 019416           64 TTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDY--FPTTLKRLKICDCT  121 (341)
Q Consensus        64 ~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~  121 (341)
                      ++|++|++++| ++..+    +..  +++|++|+++++ .+..++...  .+++|++|++++|.
T Consensus         1 p~L~~L~l~~n-~l~~i~~~~f~~--l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNN-KLTEIPPDSFSN--LPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSS-TESEECTTTTTT--GTTESEEEETSS-SESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCC-CCCccCHHHHcC--CCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeCcCCc
Confidence            57788888874 56555    777  888888888864 666666533  37888888888764

...

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.48  E-value=8.4e-06  Score=77.94  Aligned_cols=59  Identities=25%  Similarity=0.381  Sum_probs=34.5

Q ss_pred             eEeecCCCCCc-cCCCCC-CCCCccEEEeecCCCCCccccccccC-CCceeEEEEeCCCCCCC
Q 019416          281 DLSVSGCPSLM-SFPHGG-LPPNLISLGIIDCENLIPLSQWELHK-LKHLNKYTILGGLPVLE  340 (341)
Q Consensus       281 ~L~l~~c~~l~-~~~~~~-~~~~L~~L~l~~c~~~~~~~~~~i~~-~~~L~~l~l~~~C~~l~  340 (341)
                      .+.+.+|+.+. .+..-. ....++.|.+..|..++....+.... +.+++.+.+.+ |+.+.
T Consensus       380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~-~~~~~  441 (482)
T KOG1947|consen  380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSG-CRVIT  441 (482)
T ss_pred             HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccC-ccccc
Confidence            35566676662 222111 12238999999998887332221222 67788888888 87654

>PLN03150 hypothetical protein; Provisional

Probab=97.41  E-value=0.00033  Score=69.25  Aligned_cols=98  Identities=17%  Similarity=0.151  Sum_probs=58.3

Q ss_pred             cCeEEcCCCCCCccccccccCCCCccEEeccCCCCch-hh---hcccCCCCcceEeeecCCCCccccC-CCCCCCccEEE
Q 019416           42 LESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLE-VL---LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTLKRLK  116 (341)
Q Consensus        42 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~-~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~  116 (341)
                      ++.|+|+++.....+|..+..+++|+.|++++| .+. .+   ++.  +++|+.|++++|.....+|. .+.+++|+.|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N-~l~g~iP~~~~~--l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGN-SIRGNIPPSLGS--ITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCC-cccCcCChHHhC--CCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence            667777765443345666667777777777774 333 22   666  77777777777544445554 34467777777


Q ss_pred             EeCCCChHHHHHHhhhhcc---cccceEeecCC
Q 019416          117 ICDCTNAELILKVLMDQKG---LALESLEVDGC  146 (341)
Q Consensus       117 l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~  146 (341)
                      +++|.....    +|..++   .++..+++.++
T Consensus       497 Ls~N~l~g~----iP~~l~~~~~~~~~l~~~~N  525 (623)
T PLN03150        497 LNGNSLSGR----VPAALGGRLLHRASFNFTDN  525 (623)
T ss_pred             CcCCccccc----CChHHhhccccCceEEecCC
Confidence            777654434    555443   23445555543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.39  E-value=0.00019  Score=67.00  Aligned_cols=171  Identities=21%  Similarity=0.222  Sum_probs=117.3

Q ss_pred             CCCCCcCeEEcCCCCCCccccccccCCC-CccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCC-CCCC
Q 019416           37 RTGETLESLEIDNLSSLASFLRSELAAT-TVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDY-FPTT  111 (341)
Q Consensus        37 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~  111 (341)
                      ...+.++.|++.+ ..++.+++....+. +|++|++++ +.+..+   ++.  +++|+.|+++++ .+..++... ..++
T Consensus       113 ~~~~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~-N~i~~l~~~~~~--l~~L~~L~l~~N-~l~~l~~~~~~~~~  187 (394)
T COG4886         113 LELTNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSD-NKIESLPSPLRN--LPNLKNLDLSFN-DLSDLPKLLSNLSN  187 (394)
T ss_pred             hcccceeEEecCC-cccccCccccccchhhcccccccc-cchhhhhhhhhc--cccccccccCCc-hhhhhhhhhhhhhh
Confidence            3457799999987 46677777666664 999999999 667665   888  999999999985 777777654 6899


Q ss_pred             ccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCc
Q 019416          112 LKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG  189 (341)
Q Consensus       112 L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~  189 (341)
                      |+.|+++++. +..    +|....  .+|+++.+.+...+..........++..+.+.+.. +..++..           
T Consensus       188 L~~L~ls~N~-i~~----l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~~~~-----------  250 (394)
T COG4886         188 LNNLDLSGNK-ISD----LPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDLPES-----------  250 (394)
T ss_pred             hhheeccCCc-ccc----CchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeeccch-----------
Confidence            9999999986 566    777643  55999999874334333333444555555544321 2111110           


Q ss_pred             CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCC
Q 019416          190 PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSL  242 (341)
Q Consensus       190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l  242 (341)
                               +  ..++.++.|+++++ .+..++. ++.+.+++.|++++....
T Consensus       251 ---------~--~~l~~l~~L~~s~n-~i~~i~~-~~~~~~l~~L~~s~n~~~  290 (394)
T COG4886         251 ---------I--GNLSNLETLDLSNN-QISSISS-LGSLTNLRELDLSGNSLS  290 (394)
T ss_pred             ---------h--ccccccceeccccc-ccccccc-ccccCccCEEeccCcccc
Confidence                     0  12234889999874 5566655 777889999999885443

>PLN03150 hypothetical protein; Provisional

Probab=97.36  E-value=0.00046  Score=68.28  Aligned_cols=108  Identities=22%  Similarity=0.204  Sum_probs=75.8

Q ss_pred             cceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecC
Q 019416          207 LRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSG  286 (341)
Q Consensus       207 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~  286 (341)
                      ++.|++.++.--..+|..+..+++|+.|+++++.-...+|.....+++|+.|+++++.-...+|+.+..+++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            67788887655456788888889999999988754445665444457999999998653346888888999999999988


Q ss_pred             CCCCccCCCC--CCCCCccEEEeecCCCCC
Q 019416          287 CPSLMSFPHG--GLPPNLISLGIIDCENLI  314 (341)
Q Consensus       287 c~~l~~~~~~--~~~~~L~~L~l~~c~~~~  314 (341)
                      +..-..+|..  ....++..+++.++..+.
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc  529 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLC  529 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCcccc
Confidence            6543455543  223455677777655443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=97.35  E-value=1.6e-05  Score=74.37  Aligned_cols=186  Identities=24%  Similarity=0.262  Sum_probs=102.8

Q ss_pred             eEeeecCCCCccccC-CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEee
Q 019416           91 YLEFSSCLFFSNSKQ-DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIV  167 (341)
Q Consensus        91 ~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~  167 (341)
                      ..+++.+ ....+|. +..+..|+.+.++.+. +..    +|..+.  ..|++++++. +.+..+|.....--|+.|-++
T Consensus        79 ~aDlsrN-R~~elp~~~~~f~~Le~liLy~n~-~r~----ip~~i~~L~~lt~l~ls~-NqlS~lp~~lC~lpLkvli~s  151 (722)
T KOG0532|consen   79 FADLSRN-RFSELPEEACAFVSLESLILYHNC-IRT----IPEAICNLEALTFLDLSS-NQLSHLPDGLCDLPLKVLIVS  151 (722)
T ss_pred             hhhcccc-ccccCchHHHHHHHHHHHHHHhcc-cee----cchhhhhhhHHHHhhhcc-chhhcCChhhhcCcceeEEEe
Confidence            3444442 3444443 2224445555555443 333    444444  5566666655 455555554221235555555


Q ss_pred             ccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC
Q 019416          168 NCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE  247 (341)
Q Consensus       168 ~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~  247 (341)
                      + ++++.+|..+.                 ..+     .|..|+.+.| .+..+|..++++.+|+.|.+..+ .+.++|+
T Consensus       152 N-Nkl~~lp~~ig-----------------~~~-----tl~~ld~s~n-ei~slpsql~~l~slr~l~vrRn-~l~~lp~  206 (722)
T KOG0532|consen  152 N-NKLTSLPEEIG-----------------LLP-----TLAHLDVSKN-EIQSLPSQLGYLTSLRDLNVRRN-HLEDLPE  206 (722)
T ss_pred             c-CccccCCcccc-----------------cch-----hHHHhhhhhh-hhhhchHHhhhHHHHHHHHHhhh-hhhhCCH
Confidence            4 33444443211                 022     3666666653 45566666666777777766653 3555665


Q ss_pred             CCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCC----CCCCCccEEEeecCC
Q 019416          248 GGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG----GLPPNLISLGIIDCE  311 (341)
Q Consensus       248 ~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~----~~~~~L~~L~l~~c~  311 (341)
                      ....+ .|..||++. +++..+|-.+..+..|++|.+. |+.+.+-|..    |...-.+.|+..-|.
T Consensus       207 El~~L-pLi~lDfSc-Nkis~iPv~fr~m~~Lq~l~Le-nNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  207 ELCSL-PLIRLDFSC-NKISYLPVDFRKMRHLQVLQLE-NNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             HHhCC-ceeeeeccc-Cceeecchhhhhhhhheeeeec-cCCCCCChHHHHhccceeeeeeecchhcc
Confidence            44332 577778775 5788888888888888888884 4566665543    334556777776663

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.34  E-value=9.2e-05  Score=73.37  Aligned_cols=125  Identities=16%  Similarity=0.107  Sum_probs=76.2

Q ss_pred             CCCcCeEEcCCCCCCcccccc--ccCCCCccEEeccCCCCchh-h---hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416           39 GETLESLEIDNLSSLASFLRS--ELAATTVKQLKINKCPDLEV-L---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL  112 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~l~~-~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L  112 (341)
                      -.+|++|++++...+..-|..  ...+|+|+.|.+++..-..+ +   ..+  +++|..||++++ .+.++..++.+++|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~s--FpNL~sLDIS~T-nI~nl~GIS~LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCAS--FPNLRSLDISGT-NISNLSGISRLKNL  197 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhc--cCccceeecCCC-CccCcHHHhccccH
Confidence            456888888875444333322  23478888888887322222 2   678  888888888885 77777767778888


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccc-------cCCCCCccccceEEeec
Q 019416          113 KRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFS-------LPINQLPATLRHLRIVN  168 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~-------l~~~~~~~~L~~L~l~~  168 (341)
                      +.|.+.+..-...  ..+-+-+. .+|+.||++.-.....       +..+..+|+|+.|+.++
T Consensus       198 q~L~mrnLe~e~~--~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  198 QVLSMRNLEFESY--QDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             HHHhccCCCCCch--hhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            8887776542110  00111122 7888888876333222       11224467888888875

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.31  E-value=8.6e-06  Score=71.82  Aligned_cols=15  Identities=13%  Similarity=0.315  Sum_probs=8.1

Q ss_pred             CCCCCcCeEEcCCCC
Q 019416           37 RTGETLESLEIDNLS   51 (341)
Q Consensus        37 ~~~~~L~~L~l~~~~   51 (341)
                      ..+..+++++++++.
T Consensus        27 ~~~~s~~~l~lsgnt   41 (382)
T KOG1909|consen   27 EPMDSLTKLDLSGNT   41 (382)
T ss_pred             cccCceEEEeccCCc
Confidence            345555566666543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.97  E-value=0.0012  Score=40.68  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=31.2

Q ss_pred             CCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCC
Q 019416          253 TSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFP  294 (341)
Q Consensus       253 ~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~  294 (341)
                      ++|++|+++++ +++.+|..+..+++|+.|+++++ .+++++
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N-~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN-PISDIS   40 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS-CCSBEG
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC-CCCCCc
Confidence            47899999985 68899877899999999999885 566654

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.85  E-value=0.00034  Score=65.87  Aligned_cols=81  Identities=17%  Similarity=0.159  Sum_probs=45.1

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK  113 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~  113 (341)
                      ++.+.+|+.|++.++ .++.+......+++|++|++++ +.++.+  +..  ++.|+.|++.+| .+..+.....+++|+
T Consensus        91 l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~l~~--l~~L~~L~l~~N-~i~~~~~~~~l~~L~  165 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSF-NKITKLEGLST--LTLLKELNLSGN-LISDISGLESLKSLK  165 (414)
T ss_pred             cccccceeeeecccc-chhhcccchhhhhcchheeccc-cccccccchhh--ccchhhheeccC-cchhccCCccchhhh
Confidence            445666666666653 3333332234456666666666 455555  555  666666666653 555555544456666


Q ss_pred             EEEEeCCC
Q 019416          114 RLKICDCT  121 (341)
Q Consensus       114 ~L~l~~~~  121 (341)
                      .++++++.
T Consensus       166 ~l~l~~n~  173 (414)
T KOG0531|consen  166 LLDLSYNR  173 (414)
T ss_pred             cccCCcch
Confidence            66666655

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=96.76  E-value=0.00025  Score=66.70  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=25.5

Q ss_pred             CCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCC
Q 019416           62 AATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCT  121 (341)
Q Consensus        62 ~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~  121 (341)
                      .+.+|+.|++.+ ++++.+   +..  +++|++|++++ +.+..+.....++.|+.|++.+|.
T Consensus        93 ~~~~l~~l~l~~-n~i~~i~~~l~~--~~~L~~L~ls~-N~I~~i~~l~~l~~L~~L~l~~N~  151 (414)
T KOG0531|consen   93 KLKSLEALDLYD-NKIEKIENLLSS--LVNLQVLDLSF-NKITKLEGLSTLTLLKELNLSGNL  151 (414)
T ss_pred             cccceeeeeccc-cchhhcccchhh--hhcchheeccc-cccccccchhhccchhhheeccCc
Confidence            344555555544 333333   344  45555555544 244444444444445555555443

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.65  E-value=0.002  Score=39.65  Aligned_cols=34  Identities=15%  Similarity=0.277  Sum_probs=23.3

Q ss_pred             CCcCeEEcCCCCCCccccccccCCCCccEEeccCC
Q 019416           40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKC   74 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~   74 (341)
                      ++|++|+++++ .++.+|..+..+++|+.|++++|
T Consensus         1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N   34 (44)
T PF12799_consen    1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNN   34 (44)
T ss_dssp             TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSS
T ss_pred             CcceEEEccCC-CCcccCchHhCCCCCCEEEecCC
Confidence            46788888875 55666666777788888888774

...

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.41  E-value=6.5e-05  Score=72.47  Aligned_cols=99  Identities=20%  Similarity=0.195  Sum_probs=61.8

Q ss_pred             ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchhhhccCCCcCeEee
Q 019416          206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPHQIHKATSLQDLSV  284 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l  284 (341)
                      .++.|+++++ ++..+ ..+..++.|++||++++ .+..+|.-. .. -.|+.|.+.++ .++++. ++.++.+|+.|++
T Consensus       188 ale~LnLshN-k~~~v-~~Lr~l~~LkhLDlsyN-~L~~vp~l~~~g-c~L~~L~lrnN-~l~tL~-gie~LksL~~LDl  261 (1096)
T KOG1859|consen  188 ALESLNLSHN-KFTKV-DNLRRLPKLKHLDLSYN-CLRHVPQLSMVG-CKLQLLNLRNN-ALTTLR-GIENLKSLYGLDL  261 (1096)
T ss_pred             Hhhhhccchh-hhhhh-HHHHhcccccccccccc-hhccccccchhh-hhheeeeeccc-HHHhhh-hHHhhhhhhccch
Confidence            4778888874 34444 25566788888888874 455555422 22 24888888873 566665 6777888888888


Q ss_pred             cCCCCCccCCCC---CCCCCccEEEeecCC
Q 019416          285 SGCPSLMSFPHG---GLPPNLISLGIIDCE  311 (341)
Q Consensus       285 ~~c~~l~~~~~~---~~~~~L~~L~l~~c~  311 (341)
                      ++ +-+....+-   ..+.+|.+|.+.|++
T Consensus       262 sy-Nll~~hseL~pLwsLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  262 SY-NLLSEHSELEPLWSLSSLIVLWLEGNP  290 (1096)
T ss_pred             hH-hhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence            76 344433322   224567777776654

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.32  E-value=0.0014  Score=65.17  Aligned_cols=106  Identities=19%  Similarity=0.156  Sum_probs=59.5

Q ss_pred             CCCCCcCeEEcCCCCCCcccccc-ccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCc--cccCCCCCCC
Q 019416           37 RTGETLESLEIDNLSSLASFLRS-ELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFS--NSKQDYFPTT  111 (341)
Q Consensus        37 ~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~--~~~~~~~~~~  111 (341)
                      ..+|.|+.|.+.+-.....-... ...||||..||+|+ +++..+  ++.  +++|+.|.+++...-.  .+-....+++
T Consensus       145 ~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~-TnI~nl~GIS~--LknLq~L~mrnLe~e~~~~l~~LF~L~~  221 (699)
T KOG3665|consen  145 TMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISG-TNISNLSGISR--LKNLQVLSMRNLEFESYQDLIDLFNLKK  221 (699)
T ss_pred             hhCcccceEEecCceecchhHHHHhhccCccceeecCC-CCccCcHHHhc--cccHHHHhccCCCCCchhhHHHHhcccC
Confidence            45888888888763322211111 23578888888888 566666  777  8888888776542221  1111223677


Q ss_pred             ccEEEEeCCCChHHH--HHH-hhhhcc-cccceEeecC
Q 019416          112 LKRLKICDCTNAELI--LKV-LMDQKG-LALESLEVDG  145 (341)
Q Consensus       112 L~~L~l~~~~~~~~~--~~~-~~~~~~-~~L~~L~l~~  145 (341)
                      |+.|++++.......  ..+ +..... |+|+.|+.++
T Consensus       222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg  259 (699)
T KOG3665|consen  222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG  259 (699)
T ss_pred             CCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence            888888775433321  000 111111 7777777776

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.23  E-value=0.00029  Score=68.12  Aligned_cols=191  Identities=18%  Similarity=0.137  Sum_probs=96.6

Q ss_pred             CCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCc--hhhhcccCCCCcceEee-----------ecCCCCccc
Q 019416           38 TGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDL--EVLLHRMAYTSLEYLEF-----------SSCLFFSNS  103 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l--~~~~~~~~l~~L~~L~l-----------~~~~~l~~~  103 (341)
                      -+++++.|.+-.-+.-... |.++.+|..|++|.+++|+--  .++.+-  -..|+.|.-           ..|  ..++
T Consensus        82 ~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~l--r~qLe~LIC~~Sl~Al~~v~asc--ggd~  157 (1096)
T KOG1859|consen   82 FLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQEL--RHQLEKLICHNSLDALRHVFASC--GGDI  157 (1096)
T ss_pred             HHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHH--HHhhhhhhhhccHHHHHHHHHHh--cccc
Confidence            3566666666544433333 666888999999999998521  122111  112222211           111  1111


Q ss_pred             cCCCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceee
Q 019416          104 KQDYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKI  181 (341)
Q Consensus       104 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l  181 (341)
                      .....-..|..-+.++|. +..    +...+.  +.++.|+++. ++++.......++.|++|+++++ .++.+|.    
T Consensus       158 ~ns~~Wn~L~~a~fsyN~-L~~----mD~SLqll~ale~LnLsh-Nk~~~v~~Lr~l~~LkhLDlsyN-~L~~vp~----  226 (1096)
T KOG1859|consen  158 SNSPVWNKLATASFSYNR-LVL----MDESLQLLPALESLNLSH-NKFTKVDNLRRLPKLKHLDLSYN-CLRHVPQ----  226 (1096)
T ss_pred             ccchhhhhHhhhhcchhh-HHh----HHHHHHHHHHhhhhccch-hhhhhhHHHHhcccccccccccc-hhccccc----
Confidence            110001234444444443 333    444444  7788888877 56665554456678888888764 3554443    


Q ss_pred             eCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC--CCCCCcceEe
Q 019416          182 RNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG--LPNTSLTSLL  259 (341)
Q Consensus       182 ~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~--~~~~~L~~L~  259 (341)
                                       +....| +|..|.+.++ .++.+ ..+.++.+|+.||++++- +....+-.  .-+..|+.|+
T Consensus       227 -----------------l~~~gc-~L~~L~lrnN-~l~tL-~gie~LksL~~LDlsyNl-l~~hseL~pLwsLs~L~~L~  285 (1096)
T KOG1859|consen  227 -----------------LSMVGC-KLQLLNLRNN-ALTTL-RGIENLKSLYGLDLSYNL-LSEHSELEPLWSLSSLIVLW  285 (1096)
T ss_pred             -----------------cchhhh-hheeeeeccc-HHHhh-hhHHhhhhhhccchhHhh-hhcchhhhHHHHHHHHHHHh
Confidence                             111122 2777777763 34444 455667788888887742 22222100  0113566666


Q ss_pred             cccCc
Q 019416          260 ISECE  264 (341)
Q Consensus       260 l~~~~  264 (341)
                      +.+++
T Consensus       286 LeGNP  290 (1096)
T KOG1859|consen  286 LEGNP  290 (1096)
T ss_pred             hcCCc
Confidence            66654

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.89  E-value=0.0013  Score=54.03  Aligned_cols=83  Identities=23%  Similarity=0.399  Sum_probs=56.2

Q ss_pred             CCcceEecccCcccccc-hhhhccCCCcCeEeecCCCCCccCCCC---CCCCCccEEEeecCCCCCcc-ccccccCCCce
Q 019416          253 TSLTSLLISECENLMSL-PHQIHKATSLQDLSVSGCPSLMSFPHG---GLPPNLISLGIIDCENLIPL-SQWELHKLKHL  327 (341)
Q Consensus       253 ~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~c~~~~~~-~~~~i~~~~~L  327 (341)
                      ..++.++-+++. +... -+.+..+++++.|.+.+|..+.+..-+   +..++|+.|++++|+++++. -.| +.++++|
T Consensus       101 ~~IeaVDAsds~-I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~-L~~lknL  178 (221)
T KOG3864|consen  101 VKIEAVDASDSS-IMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLAC-LLKLKNL  178 (221)
T ss_pred             ceEEEEecCCch-HHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHH-HHHhhhh
Confidence            355666666643 3322 235677788888888888877654322   35688999999999999843 333 7788888


Q ss_pred             eEEEEeCCCCC
Q 019416          328 NKYTILGGLPV  338 (341)
Q Consensus       328 ~~l~l~~~C~~  338 (341)
                      +.|.+.+ =|.
T Consensus       179 r~L~l~~-l~~  188 (221)
T KOG3864|consen  179 RRLHLYD-LPY  188 (221)
T ss_pred             HHHHhcC-chh
Confidence            8888776 443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.25  E-value=0.013  Score=51.27  Aligned_cols=79  Identities=19%  Similarity=0.063  Sum_probs=51.9

Q ss_pred             CCCcCeEEcCCCCCCccccc--cc-cCCCCccEEeccCCCCchhh------hcccCCCCcceEeeecCCCCccccCCC-C
Q 019416           39 GETLESLEIDNLSSLASFLR--SE-LAATTVKQLKINKCPDLEVL------LHRMAYTSLEYLEFSSCLFFSNSKQDY-F  108 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~--~~-~~l~~L~~L~l~~~~~l~~~------~~~~~l~~L~~L~l~~~~~l~~~~~~~-~  108 (341)
                      ..-++.|.+.+|.. .....  .+ ..+..++++++.+ +.+.++      ++.  ++.|+.|+++.+..-..+.... -
T Consensus        44 ~ra~ellvln~~~i-d~~gd~~~~~~~~~~v~elDL~~-N~iSdWseI~~ile~--lP~l~~LNls~N~L~s~I~~lp~p  119 (418)
T KOG2982|consen   44 LRALELLVLNGSII-DNEGDVMLFGSSVTDVKELDLTG-NLISDWSEIGAILEQ--LPALTTLNLSCNSLSSDIKSLPLP  119 (418)
T ss_pred             ccchhhheecCCCC-CcchhHHHHHHHhhhhhhhhccc-chhccHHHHHHHHhc--CccceEeeccCCcCCCccccCccc
Confidence            33455677776532 22211  12 2368999999998 566554      788  9999999998765444454432 3


Q ss_pred             CCCccEEEEeCCC
Q 019416          109 PTTLKRLKICDCT  121 (341)
Q Consensus       109 ~~~L~~L~l~~~~  121 (341)
                      ..+|+.|.+.|..
T Consensus       120 ~~nl~~lVLNgT~  132 (418)
T KOG2982|consen  120 LKNLRVLVLNGTG  132 (418)
T ss_pred             ccceEEEEEcCCC
Confidence            5789999998854

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=94.94  E-value=0.012  Score=52.44  Aligned_cols=12  Identities=25%  Similarity=0.365  Sum_probs=6.6

Q ss_pred             CCCcceEeeecC
Q 019416           86 YTSLEYLEFSSC   97 (341)
Q Consensus        86 l~~L~~L~l~~~   97 (341)
                      ++.|+.|++.++
T Consensus       212 ~~~LevLdl~DN  223 (382)
T KOG1909|consen  212 CPHLEVLDLRDN  223 (382)
T ss_pred             CCcceeeecccc
Confidence            555555555553

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.74  E-value=0.073  Score=44.06  Aligned_cols=98  Identities=15%  Similarity=0.195  Sum_probs=53.7

Q ss_pred             cceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEecccCcccccchh--hhccCCCcCeEe
Q 019416          207 LRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISECENLMSLPH--QIHKATSLQDLS  283 (341)
Q Consensus       207 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~--~l~~l~~L~~L~  283 (341)
                      ...++++++. +..+ ..|..++.|.+|.++++ .+..+.+... .+++|+.|.+.++ .+..+.+  .+..+|+|++|.
T Consensus        44 ~d~iDLtdNd-l~~l-~~lp~l~rL~tLll~nN-rIt~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   44 FDAIDLTDND-LRKL-DNLPHLPRLHTLLLNNN-RITRIDPDLDTFLPNLKTLILTNN-SIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cceecccccc-hhhc-ccCCCccccceEEecCC-cceeeccchhhhccccceEEecCc-chhhhhhcchhccCCccceee
Confidence            4555666532 2222 34455677777777763 4555544222 1257777777774 4655533  456677777777


Q ss_pred             ecCCCCCccCCCC-----CCCCCccEEEeec
Q 019416          284 VSGCPSLMSFPHG-----GLPPNLISLGIID  309 (341)
Q Consensus       284 l~~c~~l~~~~~~-----~~~~~L~~L~l~~  309 (341)
                      +-++ .++....-     .-.|+|++||+..
T Consensus       120 ll~N-pv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCC-chhcccCceeEEEEecCcceEeehhh
Confidence            7663 34433322     1146666666643

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=94.60  E-value=0.02  Score=49.11  Aligned_cols=102  Identities=18%  Similarity=0.145  Sum_probs=58.0

Q ss_pred             CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCC-c-hhh---hcccCCCCcceEeeecCCCCc---cccCCCCC
Q 019416           38 TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPD-L-EVL---LHRMAYTSLEYLEFSSCLFFS---NSKQDYFP  109 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-l-~~~---~~~~~l~~L~~L~l~~~~~l~---~~~~~~~~  109 (341)
                      .+..|+.|++.++ +++.+ ..+-.+++|+.|.++.++. + .++   ...  +++|++++++++ .+.   .+.....+
T Consensus        41 ~~~~le~ls~~n~-gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~--~P~l~~l~ls~N-ki~~lstl~pl~~l  115 (260)
T KOG2739|consen   41 EFVELELLSVINV-GLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEK--APNLKVLNLSGN-KIKDLSTLRPLKEL  115 (260)
T ss_pred             cccchhhhhhhcc-ceeec-ccCCCcchhhhhcccCCcccccccceehhhh--CCceeEEeecCC-ccccccccchhhhh
Confidence            4666777777654 33322 1133467888888887421 1 122   666  788888888875 444   33333446


Q ss_pred             CCccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCC
Q 019416          110 TTLKRLKICDCTNAELILKVLMDQKG---LALESLEVDGC  146 (341)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~  146 (341)
                      .+|..|++..|......  -.-+.++   ++|++|+-.++
T Consensus       116 ~nL~~Ldl~n~~~~~l~--dyre~vf~ll~~L~~LD~~dv  153 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTNLD--DYREKVFLLLPSLKYLDGCDV  153 (260)
T ss_pred             cchhhhhcccCCccccc--cHHHHHHHHhhhhcccccccc
Confidence            77888888877633210  0112222   78888876553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.53  E-value=0.0031  Score=54.54  Aligned_cols=79  Identities=23%  Similarity=0.175  Sum_probs=58.7

Q ss_pred             CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-----hcccCCCCcceEeeecCCCCccccC----
Q 019416           35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-----LHRMAYTSLEYLEFSSCLFFSNSKQ----  105 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~l~~L~~L~l~~~~~l~~~~~----  105 (341)
                      ....|+.||+|.|+= ++++.+.+ +..|++|++|.|+. +.+.++     +.+  +++|+.|++..++-....+.    
T Consensus        36 ic~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLkn--lpsLr~LWL~ENPCc~~ag~nYR~  110 (388)
T KOG2123|consen   36 ICEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKN--LPSLRTLWLDENPCCGEAGQNYRR  110 (388)
T ss_pred             HHHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhc--CchhhhHhhccCCcccccchhHHH
Confidence            345799999999995 46665533 67789999999998 566655     888  99999999988766555543    


Q ss_pred             --CCCCCCccEEEEe
Q 019416          106 --DYFPTTLKRLKIC  118 (341)
Q Consensus       106 --~~~~~~L~~L~l~  118 (341)
                        ...+|+|++|+-.
T Consensus       111 ~VLR~LPnLkKLDnv  125 (388)
T KOG2123|consen  111 KVLRVLPNLKKLDNV  125 (388)
T ss_pred             HHHHHcccchhccCc
Confidence              1237999998643

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.38  E-value=0.081  Score=43.81  Aligned_cols=35  Identities=11%  Similarity=0.007  Sum_probs=15.4

Q ss_pred             CCCcceEeeecCCCCccccC---CCCCCCccEEEEeCCC
Q 019416           86 YTSLEYLEFSSCLFFSNSKQ---DYFPTTLKRLKICDCT  121 (341)
Q Consensus        86 l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~  121 (341)
                      +++|+.|.+.++ .++.+..   ...+|.|++|.+-+++
T Consensus        87 ~p~l~~L~LtnN-si~~l~dl~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   87 LPNLKTLILTNN-SIQELGDLDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             ccccceEEecCc-chhhhhhcchhccCCccceeeecCCc
Confidence            444555555442 3333322   2224455555555544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.34  E-value=0.047  Score=46.82  Aligned_cols=79  Identities=20%  Similarity=0.210  Sum_probs=36.8

Q ss_pred             CCCcceEeeecCCCCccccCCCCCCCccEEEEeCC--CChHHHHHHhhhhcc--cccceEeecCCCCcccc---CCCCCc
Q 019416           86 YTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDC--TNAELILKVLMDQKG--LALESLEVDGCSSLFSL---PINQLP  158 (341)
Q Consensus        86 l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l---~~~~~~  158 (341)
                      +..|+.+++.++ .+..+.....+++|++|.++++  .....    ++....  |+|+++++++ +.++.+   .....+
T Consensus        42 ~~~le~ls~~n~-gltt~~~~P~Lp~LkkL~lsdn~~~~~~~----l~vl~e~~P~l~~l~ls~-Nki~~lstl~pl~~l  115 (260)
T KOG2739|consen   42 FVELELLSVINV-GLTTLTNFPKLPKLKKLELSDNYRRVSGG----LEVLAEKAPNLKVLNLSG-NKIKDLSTLRPLKEL  115 (260)
T ss_pred             ccchhhhhhhcc-ceeecccCCCcchhhhhcccCCccccccc----ceehhhhCCceeEEeecC-Cccccccccchhhhh
Confidence            455555555443 3333333344556666666665  21111    111111  6666666665 344322   222334


Q ss_pred             cccceEEeeccC
Q 019416          159 ATLRHLRIVNCM  170 (341)
Q Consensus       159 ~~L~~L~l~~~~  170 (341)
                      .+|.+|++..|+
T Consensus       116 ~nL~~Ldl~n~~  127 (260)
T KOG2739|consen  116 ENLKSLDLFNCS  127 (260)
T ss_pred             cchhhhhcccCC
Confidence            556666666553

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.25  E-value=0.0027  Score=54.89  Aligned_cols=81  Identities=15%  Similarity=0.112  Sum_probs=58.7

Q ss_pred             CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCC---CCCc
Q 019416           38 TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYF---PTTL  112 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~---~~~L  112 (341)
                      .+.+.++|+..+| ++..+.. ...++.|++|.|+= +++..+  +..  |++|++|+++.+ .+..+..+.+   +|+|
T Consensus        17 dl~~vkKLNcwg~-~L~DIsi-c~kMp~lEVLsLSv-NkIssL~pl~r--CtrLkElYLRkN-~I~sldEL~YLknlpsL   90 (388)
T KOG2123|consen   17 DLENVKKLNCWGC-GLDDISI-CEKMPLLEVLSLSV-NKISSLAPLQR--CTRLKELYLRKN-CIESLDELEYLKNLPSL   90 (388)
T ss_pred             HHHHhhhhcccCC-CccHHHH-HHhcccceeEEeec-cccccchhHHH--HHHHHHHHHHhc-ccccHHHHHHHhcCchh
Confidence            3667788888887 3443321 34579999999986 778877  888  999999999874 5666655444   6888


Q ss_pred             cEEEEeCCCChH
Q 019416          113 KRLKICDCTNAE  124 (341)
Q Consensus       113 ~~L~l~~~~~~~  124 (341)
                      +.|-+..|+...
T Consensus        91 r~LWL~ENPCc~  102 (388)
T KOG2123|consen   91 RTLWLDENPCCG  102 (388)
T ss_pred             hhHhhccCCccc
Confidence            888887776443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.15  E-value=0.021  Score=47.20  Aligned_cols=57  Identities=23%  Similarity=0.367  Sum_probs=26.5

Q ss_pred             CCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CCCCCccEEEEeCC
Q 019416           63 ATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTTLKRLKICDC  120 (341)
Q Consensus        63 l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~  120 (341)
                      ++.++.|.+.+|..+.+.    ++. ..++|+.|++++|+.+++-...  ..+++|+.|.+++.
T Consensus       124 l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l  186 (221)
T KOG3864|consen  124 LRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL  186 (221)
T ss_pred             cchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence            444455555555554444    211 2455555555555555444321  12455555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.13  E-value=0.085  Score=46.35  Aligned_cols=83  Identities=19%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             cCCCCCCCcCeEEcCCCCCCccccccc-cCCCCccEEeccCCCCc--hh---hhcccCCCCcceEeeecCCCCcccc---
Q 019416           34 LGIRTGETLESLEIDNLSSLASFLRSE-LAATTVKQLKINKCPDL--EV---LLHRMAYTSLEYLEFSSCLFFSNSK---  104 (341)
Q Consensus        34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~l--~~---~~~~~~l~~L~~L~l~~~~~l~~~~---  104 (341)
                      ..+.++|.|++|+++.++ +....... .+..+|++|.+.| +.+  ..   .+..  ++.+++++++++ .++.+.   
T Consensus        91 ~ile~lP~l~~LNls~N~-L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~~--lP~vtelHmS~N-~~rq~n~Dd  165 (418)
T KOG2982|consen   91 AILEQLPALTTLNLSCNS-LSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLDD--LPKVTELHMSDN-SLRQLNLDD  165 (418)
T ss_pred             HHHhcCccceEeeccCCc-CCCccccCcccccceEEEEEcC-CCCChhhhhhhhhc--chhhhhhhhccc-hhhhhcccc
Confidence            345689999999999653 33322222 4678999999987 433  22   2788  889999998885 333221   


Q ss_pred             --CCCCCCCccEEEEeCCC
Q 019416          105 --QDYFPTTLKRLKICDCT  121 (341)
Q Consensus       105 --~~~~~~~L~~L~l~~~~  121 (341)
                        .....+.+++|...+|.
T Consensus       166 ~c~e~~s~~v~tlh~~~c~  184 (418)
T KOG2982|consen  166 NCIEDWSTEVLTLHQLPCL  184 (418)
T ss_pred             ccccccchhhhhhhcCCcH
Confidence              12234567777777765

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.01  E-value=0.1  Score=26.61  Aligned_cols=19  Identities=37%  Similarity=0.459  Sum_probs=10.7

Q ss_pred             CcceEecccCcccccchhhh
Q 019416          254 SLTSLLISECENLMSLPHQI  273 (341)
Q Consensus       254 ~L~~L~l~~~~~l~~l~~~l  273 (341)
                      +|++|++++| .++.+|..+
T Consensus         1 ~L~~Ldls~n-~l~~ip~~~   19 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTSIPSSF   19 (22)
T ss_dssp             TESEEEETSS-EESEEGTTT
T ss_pred             CccEEECCCC-cCEeCChhh
Confidence            3566666665 455665443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=89.86  E-value=0.26  Score=23.35  Aligned_cols=16  Identities=31%  Similarity=0.528  Sum_probs=7.9

Q ss_pred             CCcCeEEcCCCCCCccc
Q 019416           40 ETLESLEIDNLSSLASF   56 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~   56 (341)
                      ++|++|+|++|. ++.+
T Consensus         1 ~~L~~L~l~~n~-L~~l   16 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTSL   16 (17)
T ss_dssp             TT-SEEEETSS---SSE
T ss_pred             CccCEEECCCCC-CCCC
Confidence            456777777664 4443

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=89.58  E-value=0.033  Score=43.29  Aligned_cols=87  Identities=20%  Similarity=0.232  Sum_probs=53.2

Q ss_pred             ccceEeeccCcCCCcccccC-CCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEee
Q 019416          206 ELRELEIWDCLELEFLPEDM-HNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSV  284 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l  284 (341)
                      +|++.++++ +.++..|+.| ..++.+++|++.+ +.+..+|+....|+.|+.|.++.++ +...|+.+..+.++-.|+.
T Consensus        54 el~~i~ls~-N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lNl~~N~-l~~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSD-NGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLNLRFNP-LNAEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEeccc-chhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcccccCc-cccchHHHHHHHhHHHhcC
Confidence            366667776 3455555544 3455777777777 3566677665556777777777643 5555655555666666666


Q ss_pred             cCCCCCccCCCC
Q 019416          285 SGCPSLMSFPHG  296 (341)
Q Consensus       285 ~~c~~l~~~~~~  296 (341)
                      .+ +.+..++..
T Consensus       131 ~~-na~~eid~d  141 (177)
T KOG4579|consen  131 PE-NARAEIDVD  141 (177)
T ss_pred             CC-CccccCcHH
Confidence            54 345555544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=86.93  E-value=4.7  Score=30.51  Aligned_cols=98  Identities=18%  Similarity=0.317  Sum_probs=46.9

Q ss_pred             cccccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecCCCCC-CCCcceEecccCcccccchh-hhccCCCc
Q 019416          203 HTLELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPEGGLP-NTSLTSLLISECENLMSLPH-QIHKATSL  279 (341)
Q Consensus       203 ~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~~L~~L~l~~~~~l~~l~~-~l~~l~~L  279 (341)
                      .+++|+.+.+..  .+..++ ..|..+++|+.+.+..  .+..++...+. +++++.+.+.+  .+..++. .+..++.|
T Consensus        10 ~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen   10 NCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             T-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTE
T ss_pred             CCCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--cccccccccccccccc
Confidence            344677777763  344553 3466677888888765  36666554433 23678887764  3555543 45667788


Q ss_pred             CeEeecCCCCCccCCCCCCC-CCccEEEee
Q 019416          280 QDLSVSGCPSLMSFPHGGLP-PNLISLGII  308 (341)
Q Consensus       280 ~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~  308 (341)
                      +.+.+..  .+..++...+. ..|+.+.+.
T Consensus        84 ~~i~~~~--~~~~i~~~~f~~~~l~~i~~~  111 (129)
T PF13306_consen   84 KNIDIPS--NITEIGSSSFSNCNLKEINIP  111 (129)
T ss_dssp             CEEEETT--T-BEEHTTTTTT-T--EEE-T
T ss_pred             cccccCc--cccEEchhhhcCCCceEEEEC
Confidence            8888753  35555554332 255555553

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=86.80  E-value=4.5  Score=30.59  Aligned_cols=78  Identities=23%  Similarity=0.362  Sum_probs=30.8

Q ss_pred             CCCCCCcCeEEeecCCCCceecCCCCC-CCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCCCC--CC
Q 019416          225 MHNFTDLNLLSISNCPSLESFPEGGLP-NTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHGGL--PP  300 (341)
Q Consensus       225 ~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~--~~  300 (341)
                      |..+..|+.+.+.+  .++.+....+. +++|+.+.+.+  .++.++. .+..+++++.+.+.+  .+..++...+  .+
T Consensus         8 F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    8 FYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-T
T ss_pred             HhCCCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--cccccccccccccc
Confidence            34445556555543  34444443332 23566666554  2444443 345555566666643  3444444322  35


Q ss_pred             CccEEEee
Q 019416          301 NLISLGII  308 (341)
Q Consensus       301 ~L~~L~l~  308 (341)
                      +|+.+.+.
T Consensus        82 ~l~~i~~~   89 (129)
T PF13306_consen   82 NLKNIDIP   89 (129)
T ss_dssp             TECEEEET
T ss_pred             cccccccC
Confidence            55555553

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=86.16  E-value=0.038  Score=42.91  Aligned_cols=86  Identities=19%  Similarity=0.312  Sum_probs=58.8

Q ss_pred             cceEeeccCcCC--CcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccchhhhccCCCcCeEe
Q 019416          207 LRELEIWDCLEL--EFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSLPHQIHKATSLQDLS  283 (341)
Q Consensus       207 L~~L~l~~~~~l--~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~  283 (341)
                      +..++++.|.-.  ...+..+.....|+..+++++ .+..+|+. ...++-++.+.+++ +.+..+|+.+..++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N-~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDN-GFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccc-hhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhhHHhhhcc
Confidence            566777777422  122233334457788899884 57777762 23346889999998 57999999999999999999


Q ss_pred             ecCCCCCccCCC
Q 019416          284 VSGCPSLMSFPH  295 (341)
Q Consensus       284 l~~c~~l~~~~~  295 (341)
                      ++.++ +...+.
T Consensus       107 l~~N~-l~~~p~  117 (177)
T KOG4579|consen  107 LRFNP-LNAEPR  117 (177)
T ss_pred             cccCc-cccchH
Confidence            98854 433433

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=82.89  E-value=0.59  Score=24.79  Aligned_cols=15  Identities=13%  Similarity=0.279  Sum_probs=10.3

Q ss_pred             CceeEEEEeCCCCCCC
Q 019416          325 KHLNKYTILGGLPVLE  340 (341)
Q Consensus       325 ~~L~~l~l~~~C~~l~  340 (341)
                      ++|++|++++ |++++
T Consensus         2 ~~L~~L~l~~-C~~it   16 (26)
T smart00367        2 PNLRELDLSG-CTNIT   16 (26)
T ss_pred             CCCCEeCCCC-CCCcC
Confidence            5677777777 77664

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	341
4fcg_A	328	Structure Of The Leucine-Rich Repeat Domain Of The		3e-06

>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 24/174 (13%)
Query: 138 LESLEVDGCSSLFSLP--INQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESS 195
           L  L +  C  L  LP  +    A+  H  +VN  +L+   E + IR+      P   ++
Sbjct: 152 LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL--EWTGIRSL-----PASIAN 204
Query: 196 LENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE--GGLPNT 253
           L+N+ S   L++R         L  L   +H+   L  L +  C +L ++P   GG    
Sbjct: 205 LQNLKS---LKIRNSP------LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGG--RA 253
Query: 254 SLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPH--GGLPPNLISL 305
            L  L++ +C NL++LP  IH+ T L+ L + GC +L   P     LP N I L
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIIL 307

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	341
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-12
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-06
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	5e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 64.6 bits (158), Expect = 6e-12
 Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 25/191 (13%)

Query: 138 LESLEVDGCSSLFSLP--INQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESS 195
           LE+L +     L +LP  I  L   LR L I  C  L  L E   + + D+    +G  +
Sbjct: 129 LETLTLARNP-LRALPASIASLNR-LRELSIRACPELTELPEP--LASTDASGEHQGLVN 184

Query: 196 LENMTSSHTL------------ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLE 243
           L+++    T              L+ L+I +   L  L   +H+   L  L +  C +L 
Sbjct: 185 LQSLRLEWTGIRSLPASIANLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALR 243

Query: 244 SFPE--GGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPN 301
           ++P   GG     L  L++ +C NL++LP  IH+ T L+ L + GC +L   P       
Sbjct: 244 NYPPIFGGR--APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL--IAQ 299

Query: 302 LISLGIIDCEN 312
           L +  II    
Sbjct: 300 LPANCIILVPP 310

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 33/196 (16%), Positives = 64/196 (32%), Gaps = 23/196 (11%)

Query: 137 ALESLEVDGCSSLFSLP--INQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGES 194
             E+L   G ++L      ++Q      +       +      S+  +  ++  G   ++
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQR-HYNADRNRWHSAWRQANSNNPQ-IETRTGRALKA 70

Query: 195 SLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE--GGLPN 252
           + + +  +       LE+     L   P+     + L  ++I     L   P+       
Sbjct: 71  TADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQF-- 126

Query: 253 TSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCEN 312
             L +L ++    L +LP  I     L++LS+  CP L       LP  L          
Sbjct: 127 AGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTE-----LPEPL-------AST 173

Query: 313 LIPLSQWELHKLKHLN 328
                   L  L+ L 
Sbjct: 174 DASGEHQGLVNLQSLR 189

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 53.4 bits (129), Expect = 3e-08
 Identities = 41/170 (24%), Positives = 63/170 (37%), Gaps = 29/170 (17%)

Query: 138 LESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLE 197
           L+SL ++         I  LPA++ +L+     NLKSL    KIRN           ++ 
Sbjct: 185 LQSLRLEWTG------IRSLPASIANLQ-----NLKSL----KIRNSPLSALGP---AIH 226

Query: 198 NMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE--GGLPNTSL 255
           ++       L EL++  C  L   P        L  L + +C +L + P     L  T L
Sbjct: 227 HLPK-----LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRL--TQL 279

Query: 256 TSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISL 305
             L +  C NL  LP  I +  +   + V          H   P    + 
Sbjct: 280 EKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQH--RPVARPAE 327

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 5e-06
 Identities = 63/325 (19%), Positives = 109/325 (33%), Gaps = 82/325 (25%)

Query: 19  KNFLALALFPDE-------DKI--LGIRTGETLESLEIDNLSSLASFLRSELAA----TT 65
           K ++AL +            KI  L ++   + E++ ++ L  L   +     +    ++
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSS 221

Query: 66  VKQLKINKCPD-LEVLLHRMAY-TSL---------EYLE-FS-SC--LFFSNSKQ--DYF 108
             +L+I+     L  LL    Y   L         +    F+ SC  L  +  KQ  D+ 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 109 -PTTLKRLKICDCTNA-------ELILKVLMDQKGLALESL--EVDGCS----SLFSLPI 154
              T   + +   +          L+LK L        + L  EV   +    S+ +  I
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYL----DCRPQDLPREVLTTNPRRLSIIAESI 337

Query: 155 NQLPATLRHLRIVNCMNLKSLGESS-------KIRNC--DSVVGPEGESSLENMTSSHTL 205
               AT  + + VNC  L ++ ESS       + R       V P       ++  +  L
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS----AHIP-TILL 392

Query: 206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECEN 265
            L    IW  +    +   ++     +L+      S  S P       S+   L  + EN
Sbjct: 393 SL----IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-------SIYLELKVKLEN 441

Query: 266 LMSLPH-------QIHKATSLQDLS 283
             +L H        I K     DL 
Sbjct: 442 EYAL-HRSIVDHYNIPKTFDSDDLI 465

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 6e-06
 Identities = 38/212 (17%), Positives = 68/212 (32%), Gaps = 43/212 (20%)

Query: 11  LEPQAPVPKNFLALALFPDEDKILGIRTGETLESL-----EIDNLSSLASFLRSELAATT 65
           LEP A   K F  L++FP    I        L  +     + D +  +    +  L    
Sbjct: 366 LEP-AEYRKMFDRLSVFPPSAHI----PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420

Query: 66  VK---------QLKINKCPDLEVLLHRM---AYTSLEYLEFSSCLFFSNSKQDYFPTTLK 113
            K          L++    + E  LHR     Y   +  +             YF + + 
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD--LIPPYLDQYFYSHIG 478

Query: 114 R-LKICDCT-NAELILKVLMD-----QKGLALESLEVDGCSSLFSLPINQLPATLRHL-- 164
             LK  +      L   V +D     QK +  +S   +   S+ +  + QL     ++  
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNT-LQQLKFYKPYICD 536

Query: 165 ------RIVNCM--NLKSLGESSKIRNCDSVV 188
                 R+VN +   L  + E+        ++
Sbjct: 537 NDPKYERLVNAILDFLPKIEENLICSKYTDLL 568

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 31/197 (15%), Positives = 70/197 (35%), Gaps = 26/197 (13%)

Query: 110 TTLKRLKICDCTNAELILKVLMDQKGLALESLEV--DGCSSLFSLPINQLPATLRHLRIV 167
             ++ +++    +      V     G     +E      + L  + + ++  T   L ++
Sbjct: 66  PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125

Query: 168 --NCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDC----LELEFL 221
             +  N K L     + +C+          L  + ++    L+EL++ +     +   +L
Sbjct: 126 AKSFKNFKVL----VLSSCEGF----STDGLAAIAATCRN-LKELDLRESDVDDVSGHWL 176

Query: 222 PEDMHNFTDLNLLSISNCP------SLESFPEGGLPNTSLTSLLISECENLMSLPHQIHK 275
                 +T L  L+IS         +LE          +L SL ++    L  L   + +
Sbjct: 177 SHFPDTYTSLVSLNISCLASEVSFSALERLVTRC---PNLKSLKLNRAVPLEKLATLLQR 233

Query: 276 ATSLQDLSVSGCPSLMS 292
           A  L++L   G  + + 
Sbjct: 234 APQLEELGTGGYTAEVR 250

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 39/266 (14%), Positives = 86/266 (32%), Gaps = 48/266 (18%)

Query: 52  SLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFP-- 109
           +L   +   L +  V   +  +    + L    +   +++++ S+ +   ++        
Sbjct: 58  NLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQC 117

Query: 110 TTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNC 169
           + L+ L +     ++ I+  L   K   L  L + GCS      +  L ++   L  +N 
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN- 174

Query: 170 MNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFT 229
                      +  C        E  ++   +  +  + +L +              N  
Sbjct: 175 -----------LSWCFDF----TEKHVQVAVAHVSETITQLNLSGY---------RKNLQ 210

Query: 230 DLNLLSIS-NCPSLESFPEGGLPNTSLTSLLISECENL--MSLPHQIHKATSLQDLSVSG 286
             +L ++   CP+L               L +S+   L          +   LQ LS+S 
Sbjct: 211 KSDLSTLVRRCPNLVH-------------LDLSDSVMLKNDCFQE-FFQLNYLQHLSLSR 256

Query: 287 CPSL--MSFPHGGLPPNLISLGIIDC 310
           C  +   +    G  P L +L +   
Sbjct: 257 CYDIIPETLLELGEIPTLKTLQVFGI 282

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	341
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.85
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.85
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.83
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.83
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.83
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.82
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.81
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.81
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.81
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.8
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.8
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.8
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.79
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.79
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.78
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.78
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.78
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.78
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.78
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.77
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.77
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.76
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.76
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.75
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.74
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.74
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.74
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.73
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.72
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.72
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.71
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.71
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.71
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.7
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.7
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.7
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.7
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.69
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.69
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.68
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.68
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.68
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.67
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.65
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.65
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.64
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.63
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.62
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.6
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.59
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.58
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.58
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.58
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.58
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.56
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.55
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.54
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.51
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.5
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.49
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.49
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.48
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.48
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.47
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.46
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.46
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.45
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.45
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.45
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.44
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.44
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.43
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.43
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.42
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.41
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.41
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.38
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.36
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.36
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.32
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.32
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.3
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.29
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.29
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.27
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.27
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.24
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.21
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.16
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.14
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.1
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.09
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.99
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.97
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.96
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.96
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.91
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.88
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.88
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.88
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.86
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.85
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.84
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.81
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.79
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.75
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.66
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.65
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.55
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.46
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.44
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.42
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.36
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.26
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.22
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.21
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.19
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.18
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.13
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.13
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.08
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.07
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.97
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.93
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.85
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	97.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.76
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	97.65
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.42
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.85
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.83
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	96.76
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	96.13
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	95.93
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	89.54
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	84.74
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	84.63
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	83.43

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.85  E-value=1.7e-19  Score=169.84  Aligned_cols=305  Identities=15%  Similarity=0.120  Sum_probs=186.4

Q ss_pred             CchhhhhhcccCCC---ccccCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCC
Q 019416           17 VPKNFLALALFPDE---DKILGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTS   88 (341)
Q Consensus        17 ~~~~~~~l~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~   88 (341)
                      +|..+..|.+..+.   .....+..+++|++|++++|.....+ +..+.++++|++|++++| .+...    ++.  +++
T Consensus        28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~~  104 (455)
T 3v47_A           28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN-QFLQLETGAFNG--LAN  104 (455)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC-TTCEECTTTTTT--CTT
T ss_pred             CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC-ccCccChhhccC--ccc
Confidence            55666666665442   11345677888888888876544344 344667788888888874 34333    667  778


Q ss_pred             cceEeeecCCCCcc-cc-C--CCCCCCccEEEEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCC--C---
Q 019416           89 LEYLEFSSCLFFSN-SK-Q--DYFPTTLKRLKICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPIN--Q---  156 (341)
Q Consensus        89 L~~L~l~~~~~l~~-~~-~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~--~---  156 (341)
                      |++|++++| .+.. .+ .  ...+++|++|++++|.....    .|.. +.  ++|++|+++++ .++..+..  .   
T Consensus       105 L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~  178 (455)
T 3v47_A          105 LEVLTLTQC-NLDGAVLSGNFFKPLTSLEMLVLRDNNIKKI----QPASFFLNMRRFHVLDLTFN-KVKSICEEDLLNFQ  178 (455)
T ss_dssp             CCEEECTTS-CCBTHHHHSSTTTTCTTCCEEECCSSBCCSC----CCCGGGGGCTTCCEEECTTC-CBSCCCTTTSGGGT
T ss_pred             CCEEeCCCC-CCCccccCcccccCcccCCEEECCCCccCcc----CcccccCCCCcccEEeCCCC-cccccChhhhhccc
Confidence            888888776 3332 22 2  34467788888887764332    3433 22  77778877764 33333221  1   


Q ss_pred             -------------------------------CccccceEEeeccCCccccC------------cceeeeCCCCCCcCCCc
Q 019416          157 -------------------------------LPATLRHLRIVNCMNLKSLG------------ESSKIRNCDSVVGPEGE  193 (341)
Q Consensus       157 -------------------------------~~~~L~~L~l~~~~~l~~~~------------~~l~l~~~~~l~~~~~~  193 (341)
                                                     ..++|+.|+++++.--...+            ..+.++++.......+.
T Consensus       179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  258 (455)
T 3v47_A          179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH  258 (455)
T ss_dssp             TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred             cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence                                           11345555555542111110            02333333221110000


Q ss_pred             cccc-----ccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCcccc
Q 019416          194 SSLE-----NMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLM  267 (341)
Q Consensus       194 ~~~~-----~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~  267 (341)
                      ..+.     .+.....++|+.|+++++......|..+..+++|+.|++++|. +..++. ....+++|++|+++++ .++
T Consensus       259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~  336 (455)
T 3v47_A          259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQN-FLG  336 (455)
T ss_dssp             CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred             hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCc-ccccChhHhcCcccCCEEECCCC-ccC
Confidence            0000     0100012469999999976656667888999999999999975 555544 3334679999999996 577


Q ss_pred             cc-hhhhccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          268 SL-PHQIHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       268 ~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      .+ +..+..+++|++|++++| .+..++..  ...++|++|+++++. ++..+...+..+++|++|++++
T Consensus       337 ~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~  404 (455)
T 3v47_A          337 SIDSRMFENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT  404 (455)
T ss_dssp             EECGGGGTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred             CcChhHhcCcccCCEEECCCC-cccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccC
Confidence            66 567889999999999986 56666433  346899999999974 4444433468899999999988

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.85  E-value=7e-20  Score=166.43  Aligned_cols=276  Identities=16%  Similarity=0.117  Sum_probs=156.7

Q ss_pred             CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416           35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL  112 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L  112 (341)
                      ++..+++|++|++++| .++.++. +..+++|++|++++| .+..+  +..  +++|++|++++| .+..++....+++|
T Consensus        61 ~~~~~~~L~~L~l~~n-~i~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~--l~~L~~L~l~~n-~i~~~~~~~~l~~L  134 (347)
T 4fmz_A           61 GIEYLTNLEYLNLNGN-QITDISP-LSNLVKLTNLYIGTN-KITDISALQN--LTNLRELYLNED-NISDISPLANLTKM  134 (347)
T ss_dssp             TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTT--CTTCSEEECTTS-CCCCCGGGTTCTTC
T ss_pred             hhhhcCCccEEEccCC-ccccchh-hhcCCcCCEEEccCC-cccCchHHcC--CCcCCEEECcCC-cccCchhhccCCce
Confidence            4556777777777765 4444444 566677777777764 44444  666  777777777664 45555545556777


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCc-C
Q 019416          113 KRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG-P  190 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~-~  190 (341)
                      ++|++++|.....    ++.... ++|++|++.++ .+..++....+++|+.|+++++. +..++.   +..++.++. .
T Consensus       135 ~~L~l~~n~~~~~----~~~~~~l~~L~~L~l~~~-~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~  205 (347)
T 4fmz_A          135 YSLNLGANHNLSD----LSPLSNMTGLNYLTVTES-KVKDVTPIANLTDLYSLSLNYNQ-IEDISP---LASLTSLHYFT  205 (347)
T ss_dssp             CEEECTTCTTCCC----CGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECTTSC-CCCCGG---GGGCTTCCEEE
T ss_pred             eEEECCCCCCccc----ccchhhCCCCcEEEecCC-CcCCchhhccCCCCCEEEccCCc-cccccc---ccCCCccceee
Confidence            7777777654444    333222 67777777664 34444333455677777776652 333322   112222221 0


Q ss_pred             CCcccccccc-cccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccc
Q 019416          191 EGESSLENMT-SSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSL  269 (341)
Q Consensus       191 ~~~~~~~~l~-~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l  269 (341)
                      .....+...+ ...+++|++|++++|. +..++. +..+++|++|++++|. +..++. ...+++|++|+++++ .++.+
T Consensus       206 l~~n~l~~~~~~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~~  280 (347)
T 4fmz_A          206 AYVNQITDITPVANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTNQ-ISDINA-VKDLTKLKMLNVGSN-QISDI  280 (347)
T ss_dssp             CCSSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCC
T ss_pred             cccCCCCCCchhhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCCc-cCCChh-HhcCCCcCEEEccCC-ccCCC
Confidence            0000000010 1134467788887753 344443 6677788888887763 443332 222357888888875 46666


Q ss_pred             hhhhccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeCCC
Q 019416          270 PHQIHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGL  336 (341)
Q Consensus       270 ~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C  336 (341)
                      + .+..+++|+.|++++| .+...+..  ...++|++|++++|+.....+   +..+++|+++++++ |
T Consensus       281 ~-~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~-N  343 (347)
T 4fmz_A          281 S-VLNNLSQLNSLFLNNN-QLGNEDMEVIGGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFAN-Q  343 (347)
T ss_dssp             G-GGGGCTTCSEEECCSS-CCCGGGHHHHHTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSSC-C
T ss_pred             h-hhcCCCCCCEEECcCC-cCCCcChhHhhccccCCEEEccCCccccccC---hhhhhccceeehhh-h
Confidence            4 5677788888888775 34433322  235778888888876333222   36677888888877 5

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=2.7e-19  Score=169.65  Aligned_cols=127  Identities=20%  Similarity=0.185  Sum_probs=86.5

Q ss_pred             ccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccchh-hhccCCCcCe
Q 019416          204 TLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSLPH-QIHKATSLQD  281 (341)
Q Consensus       204 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~  281 (341)
                      +++|+.|+++++..+..++.......+|+.|++++| .++.++.. ...+++|++|+++++ .++.++. .+..+++|+.
T Consensus       199 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~  276 (477)
T 2id5_A          199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQE  276 (477)
T ss_dssp             CTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCE
T ss_pred             CcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCE
Confidence            446888888887777777766655668888888886 35544431 122358888888885 4666553 5677888888


Q ss_pred             EeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          282 LSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       282 L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      |+++++ .+..+...  ...++|++|+++++. ++..+...+..+++|++|++++
T Consensus       277 L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          277 IQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             EECCSS-CCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCS
T ss_pred             EECCCC-ccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccC
Confidence            888874 56655443  235789999998874 4433332467788999998887

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=3.5e-19  Score=168.86  Aligned_cols=100  Identities=22%  Similarity=0.266  Sum_probs=44.2

Q ss_pred             cceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccc-hhhhccCCCcCeEe
Q 019416          207 LRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSL-PHQIHKATSLQDLS  283 (341)
Q Consensus       207 L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~  283 (341)
                      |+.|+++++ .+..+| ..+..+++|+.|+++++. +..++... ..+++|++|+++++ .++.+ +..+..+++|+.|+
T Consensus       226 L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~  302 (477)
T 2id5_A          226 LTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNP-ISTIEGSMLHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLN  302 (477)
T ss_dssp             CSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSC-CCEECTTSCTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEE
T ss_pred             ccEEECcCC-cccccCHHHhcCccccCeeECCCCc-CCccChhhccccccCCEEECCCC-ccceECHHHhcCcccCCEEE
Confidence            555555553 233333 234445555555555532 33333221 12345555555553 23333 33444555555555


Q ss_pred             ecCCCCCccCCCCC--CCCCccEEEeecC
Q 019416          284 VSGCPSLMSFPHGG--LPPNLISLGIIDC  310 (341)
Q Consensus       284 l~~c~~l~~~~~~~--~~~~L~~L~l~~c  310 (341)
                      ++++ .++.++...  ..++|++|++.++
T Consensus       303 L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  330 (477)
T 2id5_A          303 VSGN-QLTTLEESVFHSVGNLETLILDSN  330 (477)
T ss_dssp             CCSS-CCSCCCGGGBSCGGGCCEEECCSS
T ss_pred             CCCC-cCceeCHhHcCCCcccCEEEccCC
Confidence            5543 344444321  1345555555544

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.83  E-value=2.7e-20  Score=186.47  Aligned_cols=130  Identities=17%  Similarity=0.104  Sum_probs=76.3

Q ss_pred             ccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEe
Q 019416          204 TLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLS  283 (341)
Q Consensus       204 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~  283 (341)
                      +++|+.|+++++.....+|..++.+++|+.|++++|.-...+|.....+++|++|+++++.-...+|..+..+++|+.|+
T Consensus       417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~  496 (768)
T 3rgz_A          417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS  496 (768)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEE
Confidence            34455566655543334555556666666666666543333443333345777777777543335666677777777777


Q ss_pred             ecCCCCCccCCCC-CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          284 VSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       284 l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      +++|.-...+|.. +..++|++|++++|......+. .+..+++|+.+++++
T Consensus       497 L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~l~~l~~L~~L~Ls~  547 (768)
T 3rgz_A          497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA-ELGDCRSLIWLDLNT  547 (768)
T ss_dssp             CCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG-GGGGCTTCCEEECCS
T ss_pred             ccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH-HHcCCCCCCEEECCC
Confidence            7765433344443 3356777777777755444444 367777777777776

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.83  E-value=6.8e-20  Score=179.79  Aligned_cols=138  Identities=14%  Similarity=0.061  Sum_probs=101.6

Q ss_pred             cccCCC--CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchh--h---hcc----cCCCCcceEeeecCCCC
Q 019416           32 KILGIR--TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEV--L---LHR----MAYTSLEYLEFSSCLFF  100 (341)
Q Consensus        32 ~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~---~~~----~~l~~L~~L~l~~~~~l  100 (341)
                      ++..++  .+++|++|++++|.....+|..+..+++|++|++++|..+..  +   ++.    ..+++|++|++++| .+
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l  317 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NL  317 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CC
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCC-cC
Confidence            566677  899999999999877777888899999999999999653543  3   444    00389999999986 55


Q ss_pred             ccccC---CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccc-cceEEeeccCCcc
Q 019416          101 SNSKQ---DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPAT-LRHLRIVNCMNLK  173 (341)
Q Consensus       101 ~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~-L~~L~l~~~~~l~  173 (341)
                      ..+|.   .+.+++|++|++++|.....    +| .+.  ++|++|+++++ .++.+|.. ..+++ |+.|+++++. +.
T Consensus       318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~----ip-~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~  390 (636)
T 4eco_A          318 KTFPVETSLQKMKKLGMLECLYNQLEGK----LP-AFGSEIKLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LK  390 (636)
T ss_dssp             SSCCCHHHHTTCTTCCEEECCSCCCEEE----CC-CCEEEEEESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CS
T ss_pred             CccCchhhhccCCCCCEEeCcCCcCccc----hh-hhCCCCCCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-Cc
Confidence            57776   55688999999999875435    67 444  88888888874 56666654 34556 8888887754 44


Q ss_pred             ccCc
Q 019416          174 SLGE  177 (341)
Q Consensus       174 ~~~~  177 (341)
                      .+|.
T Consensus       391 ~lp~  394 (636)
T 4eco_A          391 YIPN  394 (636)
T ss_dssp             SCCS
T ss_pred             ccch
Confidence            5543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=2.5e-19  Score=180.04  Aligned_cols=137  Identities=13%  Similarity=0.071  Sum_probs=99.7

Q ss_pred             cccCCC--CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchh--h---hcc-----cCCCCcceEeeecCCC
Q 019416           32 KILGIR--TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEV--L---LHR-----MAYTSLEYLEFSSCLF   99 (341)
Q Consensus        32 ~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~---~~~-----~~l~~L~~L~l~~~~~   99 (341)
                      ++..++  .+++|++|++++|.....+|..+..+++|+.|++++|..+..  +   ++.     ..+++|+.|++++| .
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~  559 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-N  559 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-C
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-c
Confidence            555666  899999999999877778888888999999999999652443  2   333     00559999999886 5


Q ss_pred             CccccC---CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccc-cceEEeeccCCc
Q 019416          100 FSNSKQ---DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPAT-LRHLRIVNCMNL  172 (341)
Q Consensus       100 l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~-L~~L~l~~~~~l  172 (341)
                      +..+|.   ...+++|+.|++++|... .    +| .++  ++|+.|+++++ .+..+|.. ..+++ |+.|+++++. +
T Consensus       560 L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~----lp-~~~~L~~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L  631 (876)
T 4ecn_A          560 LEEFPASASLQKMVKLGLLDCVHNKVR-H----LE-AFGTNVKLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-L  631 (876)
T ss_dssp             CCBCCCHHHHTTCTTCCEEECTTSCCC-B----CC-CCCTTSEESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-C
T ss_pred             CCccCChhhhhcCCCCCEEECCCCCcc-c----ch-hhcCCCcceEEECcCC-ccccchHHHhhccccCCEEECcCCC-C
Confidence            557776   556888999999988643 5    77 444  88888888874 55566654 44566 8888888764 4


Q ss_pred             cccCc
Q 019416          173 KSLGE  177 (341)
Q Consensus       173 ~~~~~  177 (341)
                      ..+|.
T Consensus       632 ~~lp~  636 (876)
T 4ecn_A          632 KYIPN  636 (876)
T ss_dssp             CSCCS
T ss_pred             CcCch
Confidence            45553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.83  E-value=2.6e-19  Score=162.70  Aligned_cols=280  Identities=16%  Similarity=0.104  Sum_probs=200.0

Q ss_pred             cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCC
Q 019416           34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTT  111 (341)
Q Consensus        34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~  111 (341)
                      ..+..+++|++|+++++ .++.++. +..+++|++|++++| .+.++  +..  +++|++|++++| .+..++....+++
T Consensus        38 ~~~~~l~~L~~L~l~~~-~i~~~~~-~~~~~~L~~L~l~~n-~i~~~~~~~~--l~~L~~L~L~~n-~i~~~~~~~~l~~  111 (347)
T 4fmz_A           38 VTQEELESITKLVVAGE-KVASIQG-IEYLTNLEYLNLNGN-QITDISPLSN--LVKLTNLYIGTN-KITDISALQNLTN  111 (347)
T ss_dssp             ECHHHHTTCSEEECCSS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTT--CTTCCEEECCSS-CCCCCGGGTTCTT
T ss_pred             ccchhcccccEEEEeCC-ccccchh-hhhcCCccEEEccCC-ccccchhhhc--CCcCCEEEccCC-cccCchHHcCCCc
Confidence            34557999999999986 4555554 777999999999995 55555  888  999999999986 7777777777899


Q ss_pred             ccEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCc-
Q 019416          112 LKRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG-  189 (341)
Q Consensus       112 L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~-  189 (341)
                      |++|++++|. +..    ++.... ++|++|++++|.....++....+++|+.|+++++. +..++.   +..+++++. 
T Consensus       112 L~~L~l~~n~-i~~----~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~---~~~l~~L~~L  182 (347)
T 4fmz_A          112 LRELYLNEDN-ISD----ISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESK-VKDVTP---IANLTDLYSL  182 (347)
T ss_dssp             CSEEECTTSC-CCC----CGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSC-CCCCGG---GGGCTTCSEE
T ss_pred             CCEEECcCCc-ccC----chhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCC-cCCchh---hccCCCCCEE
Confidence            9999999987 344    444222 99999999998888777666777899999999864 333322   222233222 


Q ss_pred             CCCcccccccc-cccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCccccc
Q 019416          190 PEGESSLENMT-SSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMS  268 (341)
Q Consensus       190 ~~~~~~~~~l~-~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~  268 (341)
                      ......+..++ ...+++|+.++++++. +..++. +..+++|++|++++|. +..++. ...+++|++|+++++ .++.
T Consensus       183 ~l~~n~l~~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n-~l~~  257 (347)
T 4fmz_A          183 SLNYNQIEDISPLASLTSLHYFTAYVNQ-ITDITP-VANMTRLNSLKIGNNK-ITDLSP-LANLSQLTWLEIGTN-QISD  257 (347)
T ss_dssp             ECTTSCCCCCGGGGGCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCC
T ss_pred             EccCCcccccccccCCCccceeecccCC-CCCCch-hhcCCcCCEEEccCCc-cCCCcc-hhcCCCCCEEECCCC-ccCC
Confidence            00000011111 1245578888888864 344433 6778899999999874 444443 233469999999986 5777


Q ss_pred             chhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCCccccccccCCCceeEEEEeCCCC
Q 019416          269 LPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLP  337 (341)
Q Consensus       269 l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C~  337 (341)
                      ++ .+..+++|+.|++++| .+..++....+++|++|++++|......+. .+..+++|++|++++ |+
T Consensus       258 ~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~l~~l~~L~~L~L~~-n~  322 (347)
T 4fmz_A          258 IN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQ-NH  322 (347)
T ss_dssp             CG-GGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSCCCGGGHH-HHHTCTTCSEEECCS-SS
T ss_pred             Ch-hHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCcCCCcChh-HhhccccCCEEEccC-Cc
Confidence            74 6788999999999886 667665434578999999999865544434 368899999999999 75

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.82  E-value=1.9e-18  Score=168.60  Aligned_cols=146  Identities=13%  Similarity=0.017  Sum_probs=85.1

Q ss_pred             CCCchhhhhhcccCCC--cc-ccCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCC
Q 019416           15 APVPKNFLALALFPDE--DK-ILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYT   87 (341)
Q Consensus        15 ~~~~~~~~~l~~~~~~--~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~   87 (341)
                      ..+|.....+.+..+.  .. ...++.+++|++|++++|......|..+..+++|++|++++| .+...    ++.  ++
T Consensus        29 ~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~  105 (606)
T 3t6q_A           29 GTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETALSG--PK  105 (606)
T ss_dssp             TTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC-CCSEECTTTTSS--CT
T ss_pred             CCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCC-cccccChhhhcc--cc
Confidence            4455666666665442  11 235777888888888876443333566777888888888874 34333    667  77


Q ss_pred             CcceEeeecCCCCcccc--CCCCCCCccEEEEeCCCChH-HHHHHhhhhcc-cccceEeecCCCCccccCCC--CCcccc
Q 019416           88 SLEYLEFSSCLFFSNSK--QDYFPTTLKRLKICDCTNAE-LILKVLMDQKG-LALESLEVDGCSSLFSLPIN--QLPATL  161 (341)
Q Consensus        88 ~L~~L~l~~~~~l~~~~--~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~--~~~~~L  161 (341)
                      +|++|++++| .+..++  ....+++|++|++++|.... .    .|...+ ++|++|+++++ .++.++..  ..+++|
T Consensus       106 ~L~~L~L~~n-~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L  179 (606)
T 3t6q_A          106 ALKHLFFIQT-GISSIDFIPLHNQKTLESLYLGSNHISSIK----LPKGFPTEKLKVLDFQNN-AIHYLSKEDMSSLQQA  179 (606)
T ss_dssp             TCCEEECTTS-CCSCGGGSCCTTCTTCCEEECCSSCCCCCC----CCTTCCCTTCCEEECCSS-CCCEECHHHHHTTTTC
T ss_pred             cccEeecccc-CcccCCcchhccCCcccEEECCCCcccccC----cccccCCcccCEEEcccC-cccccChhhhhhhccc
Confidence            8888888775 444442  23346777777777765322 1    233333 67777777663 44443322  234455


Q ss_pred             c--eEEeecc
Q 019416          162 R--HLRIVNC  169 (341)
Q Consensus       162 ~--~L~l~~~  169 (341)
                      +  +|+++++
T Consensus       180 ~~l~L~l~~n  189 (606)
T 3t6q_A          180 TNLSLNLNGN  189 (606)
T ss_dssp             CSEEEECTTC
T ss_pred             ceeEEecCCC
Confidence            5  4555543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.82  E-value=1.5e-18  Score=169.33  Aligned_cols=128  Identities=13%  Similarity=0.065  Sum_probs=85.3

Q ss_pred             CCCchhhhhhcccCCC--ccc-cCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCC
Q 019416           15 APVPKNFLALALFPDE--DKI-LGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAY   86 (341)
Q Consensus        15 ~~~~~~~~~l~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l   86 (341)
                      ..+|..+..+.+..+.  ... ..+..+++|++|++++| .++.+ |..+.++++|++|++++| .+..+    ++.  +
T Consensus        28 ~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~i~~~~~~~l~~L~~L~Ls~n-~l~~~~p~~~~~--l  103 (606)
T 3vq2_A           28 DDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRC-EIETIEDKAWHGLHHLSNLILTGN-PIQSFSPGSFSG--L  103 (606)
T ss_dssp             TTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCCCCTTSSTT--C
T ss_pred             CCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCC-cccccCHHHhhchhhcCEeECCCC-cccccChhhcCC--c
Confidence            3455666777665542  122 25778888999999886 44555 556778889999999885 44443    777  8


Q ss_pred             CCcceEeeecCCCCccccC--CCCCCCccEEEEeCCCChH-HHHHHhhhhcc--cccceEeecCCCCcccc
Q 019416           87 TSLEYLEFSSCLFFSNSKQ--DYFPTTLKRLKICDCTNAE-LILKVLMDQKG--LALESLEVDGCSSLFSL  152 (341)
Q Consensus        87 ~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~--~~L~~L~l~~~~~l~~l  152 (341)
                      ++|++|++++| .+..++.  .+.+++|++|++++|.... .    +|..++  ++|++|+++++ .++.+
T Consensus       104 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~----lp~~~~~l~~L~~L~Ls~n-~l~~~  168 (606)
T 3vq2_A          104 TSLENLVAVET-KLASLESFPIGQLITLKKLNVAHNFIHSCK----LPAYFSNLTNLVHVDLSYN-YIQTI  168 (606)
T ss_dssp             TTCCEEECTTS-CCCCSSSSCCTTCTTCCEEECCSSCCCCCC----CCGGGGTCTTCCEEECCSS-CCCEE
T ss_pred             ccCCEEEccCC-ccccccccccCCCCCCCEEeCCCCccccee----chHhHhhcCCCCEEEccCC-cceec
Confidence            88888888876 5554442  3447888888888876432 3    455555  78888888774 44443

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=5e-19  Score=163.52  Aligned_cols=268  Identities=17%  Similarity=0.145  Sum_probs=128.0

Q ss_pred             CCCCCCcCeEEcCCCCCCcccc-ccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CC
Q 019416           36 IRTGETLESLEIDNLSSLASFL-RSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YF  108 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~  108 (341)
                      +..+++|++|+++++. ++.++ ..+..+++|++|++++| .+..+    ++.  +++|++|++++| .+..++..  ..
T Consensus        65 ~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~l~~~~~~~  139 (390)
T 3o6n_A           65 LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQN--VPLLTVLVLERN-DLSSLPRGIFHN  139 (390)
T ss_dssp             HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             hcccccCcEEECCCCc-ccccChhhccCCCCcCEEECCCC-CCCcCCHHHhcC--CCCCCEEECCCC-ccCcCCHHHhcC
Confidence            3456777777777653 44443 34666777777777764 34333    566  777777777764 55555542  33


Q ss_pred             CCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc-----ceee
Q 019416          109 PTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE-----SSKI  181 (341)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~-----~l~l  181 (341)
                      +++|++|++++|.....    .+..+.  ++|++|+++++ .++.++. ..+++|+.++++++. +..++.     .+++
T Consensus       140 l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~L~~L~l  212 (390)
T 3o6n_A          140 TPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSN-RLTHVDL-SLIPSLFHANVSYNL-LSTLAIPIAVEELDA  212 (390)
T ss_dssp             CTTCCEEECCSSCCCBC----CTTTTSSCTTCCEEECCSS-CCSBCCG-GGCTTCSEEECCSSC-CSEEECCSSCSEEEC
T ss_pred             CCCCcEEECCCCccCcc----ChhhccCCCCCCEEECCCC-cCCcccc-ccccccceeeccccc-ccccCCCCcceEEEC
Confidence            67777777777653222    223233  67777777663 4444432 233456666655431 222111     2222


Q ss_pred             eCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCcee-cCCCCCCCCcceEec
Q 019416          182 RNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESF-PEGGLPNTSLTSLLI  260 (341)
Q Consensus       182 ~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l  260 (341)
                      +++.-          ..+|...+++|+.|+++++. +... .++..+++|++|+++++. +... +.....+++|++|++
T Consensus       213 ~~n~l----------~~~~~~~~~~L~~L~l~~n~-l~~~-~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L  279 (390)
T 3o6n_A          213 SHNSI----------NVVRGPVNVELTILKLQHNN-LTDT-AWLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYI  279 (390)
T ss_dssp             CSSCC----------CEEECCCCSSCCEEECCSSC-CCCC-GGGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEEC
T ss_pred             CCCee----------eeccccccccccEEECCCCC-Cccc-HHHcCCCCccEEECCCCc-CCCcChhHccccccCCEEEC
Confidence            22211          00111122235555555532 2222 234445555555555542 2222 222222345555555


Q ss_pred             ccCcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          261 SECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       261 ~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      +++ .++.++.....+++|+.|++++| .+..++.. ...++|++|++.+|.. +..   .+..+++|++|++++
T Consensus       280 ~~n-~l~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i-~~~---~~~~~~~L~~L~l~~  348 (390)
T 3o6n_A          280 SNN-RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSI-VTL---KLSTHHTLKNLTLSH  348 (390)
T ss_dssp             CSS-CCCEEECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCC-CCC---CCCTTCCCSEEECCS
T ss_pred             CCC-cCcccCcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCcc-cee---CchhhccCCEEEcCC
Confidence            553 34444444444555555555543 34333322 1234555555555432 212   124445555555554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.81  E-value=1.2e-19  Score=181.74  Aligned_cols=290  Identities=15%  Similarity=0.095  Sum_probs=164.3

Q ss_pred             CCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchh-h---hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416           37 RTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEV-L---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL  112 (341)
Q Consensus        37 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L  112 (341)
                      ..+++|++|++++|.....+|. +..+++|++|++++|. +.. +   +..  +++|++|++++|.....++.. .+++|
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~~--l~~L~~L~Ls~n~l~~~~~~~-~l~~L  271 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNK-LSGDFSRAIST--CTELKLLNISSNQFVGPIPPL-PLKSL  271 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSC-CCSCHHHHTTT--CSSCCEEECCSSCCEESCCCC-CCTTC
T ss_pred             ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCc-CCCcccHHHhc--CCCCCEEECCCCcccCccCcc-ccCCC
Confidence            4567777777776544333343 6667777777777743 322 2   666  777777777765433333332 34555


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCc----------c
Q 019416          113 KRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGE----------S  178 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~----------~  178 (341)
                      ++|++++|.....    +|..++   ++|++|+++++..-..+|.. ..+++|++|+++++.-...+|.          .
T Consensus       272 ~~L~L~~n~l~~~----ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~  347 (768)
T 3rgz_A          272 QYLSLAENKFTGE----IPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV  347 (768)
T ss_dssp             CEEECCSSEEEES----CCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCE
T ss_pred             CEEECcCCccCCc----cCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCE
Confidence            5555555543223    343332   45555555543221122221 2334455555544321111211          2


Q ss_pred             eeeeCCCC--------------CCc-CCCccccc-ccccc----cccccceEeeccCcCCCcccccCCCCCCcCeEEeec
Q 019416          179 SKIRNCDS--------------VVG-PEGESSLE-NMTSS----HTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISN  238 (341)
Q Consensus       179 l~l~~~~~--------------l~~-~~~~~~~~-~l~~~----~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~  238 (341)
                      ++++++..              ++. ......+. ..|..    .+++|+.|++++|.....+|..+..+++|+.|++++
T Consensus       348 L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~  427 (768)
T 3rgz_A          348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSF  427 (768)
T ss_dssp             EECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCS
T ss_pred             EeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcC
Confidence            22222211              110 00000000 00100    134578888887765556777888888888888888


Q ss_pred             CCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCCccc
Q 019416          239 CPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLS  317 (341)
Q Consensus       239 c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~  317 (341)
                      |.-....|.....+++|++|+++++.-...+|..+..+++|++|++++|.-...++.. ...++|++|++++|......+
T Consensus       428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p  507 (768)
T 3rgz_A          428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP  507 (768)
T ss_dssp             SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred             CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence            6432334443334568999999987543467888888999999999886433345543 346889999999987665667


Q ss_pred             cccccCCCceeEEEEeCCCC
Q 019416          318 QWELHKLKHLNKYTILGGLP  337 (341)
Q Consensus       318 ~~~i~~~~~L~~l~l~~~C~  337 (341)
                      .| +..+++|++|++++ |.
T Consensus       508 ~~-~~~l~~L~~L~L~~-N~  525 (768)
T 3rgz_A          508 KW-IGRLENLAILKLSN-NS  525 (768)
T ss_dssp             GG-GGGCTTCCEEECCS-SC
T ss_pred             hH-HhcCCCCCEEECCC-Cc
Confidence            65 78899999999998 63

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.81  E-value=6.7e-19  Score=172.77  Aligned_cols=220  Identities=13%  Similarity=0.180  Sum_probs=133.3

Q ss_pred             ccccccccCCCCccEEeccCCCCchh------------------h---hc--ccCCCCcceEeeecCCCCccccC-CCCC
Q 019416           54 ASFLRSELAATTVKQLKINKCPDLEV------------------L---LH--RMAYTSLEYLEFSSCLFFSNSKQ-DYFP  109 (341)
Q Consensus        54 ~~~~~~~~~l~~L~~L~l~~~~~l~~------------------~---~~--~~~l~~L~~L~l~~~~~l~~~~~-~~~~  109 (341)
                      +.+|.+++.+++|++|+++++. +..                  +   ++  .  +++|++|++++|.....+|. .+.+
T Consensus       196 ~~ip~~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~--l~~L~~L~L~~n~l~~~~p~~l~~l  272 (636)
T 4eco_A          196 TFVSKAVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDN--LKDLTDVEVYNCPNLTKLPTFLKAL  272 (636)
T ss_dssp             EEECGGGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGG--CTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred             ccCCHHHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcc--cCCCCEEEecCCcCCccChHHHhcC
Confidence            3467778889999999999954 555                  5   55  8  99999999999876777775 4558


Q ss_pred             CCccEEEEeCCC-ChH-HHHHHhhhhcc--------cccceEeecCCCCccccCC--C-CCccccceEEeeccCCcc-cc
Q 019416          110 TTLKRLKICDCT-NAE-LILKVLMDQKG--------LALESLEVDGCSSLFSLPI--N-QLPATLRHLRIVNCMNLK-SL  175 (341)
Q Consensus       110 ~~L~~L~l~~~~-~~~-~~~~~~~~~~~--------~~L~~L~l~~~~~l~~l~~--~-~~~~~L~~L~l~~~~~l~-~~  175 (341)
                      ++|++|++++|. ... .    +|..++        ++|++|+++++ .++.+|.  . ..+++|+.|+++++. +. .+
T Consensus       273 ~~L~~L~Ls~n~~l~~~~----lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~~l~~L~~L~L~~N~-l~g~i  346 (636)
T 4eco_A          273 PEMQLINVACNRGISGEQ----LKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQKMKKLGMLECLYNQ-LEGKL  346 (636)
T ss_dssp             SSCCEEECTTCTTSCHHH----HHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHTTCTTCCEEECCSCC-CEEEC
T ss_pred             CCCCEEECcCCCCCcccc----chHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhccCCCCCEEeCcCCc-Cccch
Confidence            999999999997 333 4    555443        78999999885 5667776  3 567889999998764 33 55


Q ss_pred             Cc--------ceeeeCCCCCCcCCCcccccccccc--cccc-cceEeeccCcCCCcccccCCCCC--CcCeEEeecCCCC
Q 019416          176 GE--------SSKIRNCDSVVGPEGESSLENMTSS--HTLE-LRELEIWDCLELEFLPEDMHNFT--DLNLLSISNCPSL  242 (341)
Q Consensus       176 ~~--------~l~l~~~~~l~~~~~~~~~~~l~~~--~~~~-L~~L~l~~~~~l~~l~~~~~~l~--~L~~L~l~~c~~l  242 (341)
                      |.        .++++++.          +..+|..  .+++ |+.|+++++. +..+|..+..++  +|+.|++++|.-.
T Consensus       347 p~~~~l~~L~~L~L~~N~----------l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N~l~  415 (636)
T 4eco_A          347 PAFGSEIKLASLNLAYNQ----------ITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYNEIG  415 (636)
T ss_dssp             CCCEEEEEESEEECCSSE----------EEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred             hhhCCCCCCCEEECCCCc----------cccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCCcCC
Confidence            42        22332221          1112211  3445 7777777654 346666555433  6666666665322


Q ss_pred             ceecCCC-------CCCCCcceEecccCcccccchhh-hccCCCcCeEeecCCCCCccCCC
Q 019416          243 ESFPEGG-------LPNTSLTSLLISECENLMSLPHQ-IHKATSLQDLSVSGCPSLMSFPH  295 (341)
Q Consensus       243 ~~~~~~~-------~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~~~~  295 (341)
                      ...|...       +..++|++|+++++ .++.+|.. +..+++|++|+++++ .+..++.
T Consensus       416 ~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N-~l~~i~~  474 (636)
T 4eco_A          416 SVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGN-MLTEIPK  474 (636)
T ss_dssp             TTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSS-CCSBCCS
T ss_pred             CcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCC-CCCCcCH
Confidence            2222111       12235666666553 34455443 233555555555543 3344443

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.81  E-value=9.8e-18  Score=151.30  Aligned_cols=256  Identities=12%  Similarity=0.120  Sum_probs=181.8

Q ss_pred             CCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416           39 GETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK  113 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~  113 (341)
                      .+++++|+++++ .++.++. .+..+++|++|++++| .+..+    +..  +++|++|+++++ .+..++... +++|+
T Consensus        51 ~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--l~~L~~L~Ls~n-~l~~l~~~~-~~~L~  124 (330)
T 1xku_A           51 PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINN-KISKISPGAFAP--LVKLERLYLSKN-QLKELPEKM-PKTLQ  124 (330)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSS-CCCCBCTTTTTT--CTTCCEEECCSS-CCSBCCSSC-CTTCC
T ss_pred             CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCC-cCCeeCHHHhcC--CCCCCEEECCCC-cCCccChhh-ccccc
Confidence            467899999986 4556554 5778899999999884 44443    777  889999999875 566666533 48899


Q ss_pred             EEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccc--cCCC--CCccccceEEeeccCCccccCcceeeeCCCCC
Q 019416          114 RLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFS--LPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSV  187 (341)
Q Consensus       114 ~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~--l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l  187 (341)
                      +|++++|.....    .+..+.  ++|++|+++++ .++.  ....  ..+++|+.|+++++. +..+|.          
T Consensus       125 ~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~l~~----------  188 (330)
T 1xku_A          125 ELRVHENEITKV----RKSVFNGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ----------  188 (330)
T ss_dssp             EEECCSSCCCBB----CHHHHTTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS----------
T ss_pred             EEECCCCccccc----CHhHhcCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCCCc-cccCCc----------
Confidence            999998863322    222233  88999999874 4432  2221  446788888888753 443332          


Q ss_pred             CcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCccc
Q 019416          188 VGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENL  266 (341)
Q Consensus       188 ~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l  266 (341)
                                    ...++|+.|+++++......+..+..+++|+.|+++++. +..++.. ...+++|++|+++++ .+
T Consensus       189 --------------~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l  252 (330)
T 1xku_A          189 --------------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS-ISAVDNGSLANTPHLRELHLNNN-KL  252 (330)
T ss_dssp             --------------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSC-CCEECTTTGGGSTTCCEEECCSS-CC
T ss_pred             --------------cccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CceeChhhccCCCCCCEEECCCC-cC
Confidence                          112359999999975433346788899999999999964 5555543 334579999999996 68


Q ss_pred             ccchhhhccCCCcCeEeecCCCCCccCCCCCC--------CCCccEEEeecCCCCC--ccccccccCCCceeEEEEeC
Q 019416          267 MSLPHQIHKATSLQDLSVSGCPSLMSFPHGGL--------PPNLISLGIIDCENLI--PLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       267 ~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--------~~~L~~L~l~~c~~~~--~~~~~~i~~~~~L~~l~l~~  334 (341)
                      +.+|..+..+++|++|+++++ .++.++...+        .++++.+++.+++...  ..+. .+..+++++.+++++
T Consensus       253 ~~lp~~l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~-~f~~~~~l~~l~L~~  328 (330)
T 1xku_A          253 VKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS-TFRCVYVRAAVQLGN  328 (330)
T ss_dssp             SSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG-GGTTCCCGGGEEC--
T ss_pred             ccCChhhccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCcc-ccccccceeEEEecc
Confidence            899999999999999999885 6777766533        3678999999987543  2222 468899999999987

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.80  E-value=3.9e-18  Score=154.10  Aligned_cols=257  Identities=12%  Similarity=0.107  Sum_probs=167.4

Q ss_pred             CCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416           39 GETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK  113 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~  113 (341)
                      .++|++|+++++. ++.+ +..+..+++|++|++++| .+..+    +..  +++|++|+++++ .+..++.... ++|+
T Consensus        53 ~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~l~~~~~-~~L~  126 (332)
T 2ft3_A           53 SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVLVNN-KISKIHEKAFSP--LRKLQKLYISKN-HLVEIPPNLP-SSLV  126 (332)
T ss_dssp             CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECGGGSTT--CTTCCEEECCSS-CCCSCCSSCC-TTCC
T ss_pred             CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEECCCC-ccCccCHhHhhC--cCCCCEEECCCC-cCCccCcccc-ccCC
Confidence            3567777777653 4444 335666777777777774 34333    666  777777777764 5555654333 6777


Q ss_pred             EEEEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccc--cCCC--CCccccceEEeeccCCccccCcceeeeCCCC
Q 019416          114 RLKICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFS--LPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDS  186 (341)
Q Consensus       114 ~L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~--l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~  186 (341)
                      +|++++|.. ..    ++.. +.  ++|+.|+++++ .++.  ....  ..+ +|+.|+++++. +..+|.         
T Consensus       127 ~L~l~~n~i-~~----~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~---------  189 (332)
T 2ft3_A          127 ELRIHDNRI-RK----VPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPK---------  189 (332)
T ss_dssp             EEECCSSCC-CC----CCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCS---------
T ss_pred             EEECCCCcc-Cc----cCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCC-CCccCc---------
Confidence            777777653 33    3332 22  77777777764 3332  1111  222 66667666542 333322         


Q ss_pred             CCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcc
Q 019416          187 VVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECEN  265 (341)
Q Consensus       187 l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~  265 (341)
                                     ...++|+.|+++++......+..+..+++|+.|+++++. +..++.. ...+++|++|+++++ .
T Consensus       190 ---------------~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N-~  252 (332)
T 2ft3_A          190 ---------------DLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQ-IRMIENGSLSFLPTLRELHLDNN-K  252 (332)
T ss_dssp             ---------------SSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSC-CCCCCTTGGGGCTTCCEEECCSS-C
T ss_pred             ---------------cccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc-CCcCChhHhhCCCCCCEEECCCC-c
Confidence                           122359999999865434445788899999999999964 5555542 233579999999996 6


Q ss_pred             cccchhhhccCCCcCeEeecCCCCCccCCCCCC--------CCCccEEEeecCCCCC-ccccccccCCCceeEEEEeCCC
Q 019416          266 LMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGL--------PPNLISLGIIDCENLI-PLSQWELHKLKHLNKYTILGGL  336 (341)
Q Consensus       266 l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--------~~~L~~L~l~~c~~~~-~~~~~~i~~~~~L~~l~l~~~C  336 (341)
                      ++.+|..+..+++|+.|+++++ .++.++...+        .++|+.+++.+++... ......+..+++|+.+++++ +
T Consensus       253 l~~lp~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~-n  330 (332)
T 2ft3_A          253 LSRVPAGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGN-Y  330 (332)
T ss_dssp             CCBCCTTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CeecChhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccc-c
Confidence            8899999999999999999984 6777765432        3579999999987552 22222478899999999988 6


Q ss_pred             C
Q 019416          337 P  337 (341)
Q Consensus       337 ~  337 (341)
                      .
T Consensus       331 ~  331 (332)
T 2ft3_A          331 K  331 (332)
T ss_dssp             -
T ss_pred             c
Confidence            4

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.80  E-value=3.7e-18  Score=164.52  Aligned_cols=120  Identities=16%  Similarity=0.177  Sum_probs=69.5

Q ss_pred             CchhhhhhcccCCC--c-cccCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCC
Q 019416           17 VPKNFLALALFPDE--D-KILGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTS   88 (341)
Q Consensus        17 ~~~~~~~l~~~~~~--~-~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~   88 (341)
                      ++..+..+.+..+.  . ....+..+++|++|++++|. ++.+ |..+..+++|++|++++| .+...    ++.  +++
T Consensus        24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~~   99 (549)
T 2z81_A           24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDN-HLSSLSSSWFGP--LSS   99 (549)
T ss_dssp             CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCCSCCHHHHTT--CTT
T ss_pred             CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCC-ccCccCHHHhcc--CCC
Confidence            34556666665442  1 12356778888888888763 4444 345677788888888874 44333    666  777


Q ss_pred             cceEeeecCCCCccc---cCCCCCCCccEEEEeCCCChHHHHHHhhh-hcc--cccceEeecC
Q 019416           89 LEYLEFSSCLFFSNS---KQDYFPTTLKRLKICDCTNAELILKVLMD-QKG--LALESLEVDG  145 (341)
Q Consensus        89 L~~L~l~~~~~l~~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~--~~L~~L~l~~  145 (341)
                      |++|++++| .+..+   +....+++|++|++++|..+..    +|. .+.  ++|++|++++
T Consensus       100 L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~l~~L~~L~L~~  157 (549)
T 2z81_A          100 LKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSE----IRRIDFAGLTSLNELEIKA  157 (549)
T ss_dssp             CCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE----ECTTTTTTCCEEEEEEEEE
T ss_pred             CcEEECCCC-cccccchhhhhhccCCccEEECCCCccccc----cCHhhhhcccccCeeeccC
Confidence            777777765 33322   1233466777777776653333    331 222  5555555554

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.80  E-value=2.2e-18  Score=168.02  Aligned_cols=265  Identities=15%  Similarity=0.083  Sum_probs=172.3

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCC
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFP  109 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~  109 (341)
                      +..+++|++|++++| .++.+|..+..+++|++|++++| .+...    +..  +++|++|++++|.....++.  ...+
T Consensus       274 ~~~l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~--l~~L~~L~l~~n~~~~~~~~~~~~~l  349 (606)
T 3t6q_A          274 FHCFSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSAN-KFENLCQISASN--FPSLTHLSIKGNTKRLELGTGCLENL  349 (606)
T ss_dssp             TTTCTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGG--CTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred             hccccCCCEEeccCC-ccCCCChhhcccccCCEEECccC-CcCcCchhhhhc--cCcCCEEECCCCCcccccchhhhhcc
Confidence            677888999999886 56677877888889999999885 44333    777  88899999988754445544  3447


Q ss_pred             CCccEEEEeCCCChHHHHHHh--hhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeC
Q 019416          110 TTLKRLKICDCTNAELILKVL--MDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRN  183 (341)
Q Consensus       110 ~~L~~L~l~~~~~~~~~~~~~--~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~  183 (341)
                      ++|++|++++|.....    .  +..+.  ++|++|+++++ .+..++..  ..+++|+.|+++++.--...+.      
T Consensus       350 ~~L~~L~l~~n~l~~~----~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~------  418 (606)
T 3t6q_A          350 ENLRELDLSHDDIETS----DCCNLQLRNLSHLQSLNLSYN-EPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ------  418 (606)
T ss_dssp             TTCCEEECCSSCCCEE----EESTTTTTTCTTCCEEECCSC-SCEEECTTTTTTCTTCSEEECTTCCEECCTTC------
T ss_pred             CcCCEEECCCCccccc----cCcchhcccCCCCCEEECCCC-cCCcCCHHHhcCCccCCeEECCCCcCCCcccc------
Confidence            8889999888763321    1  23333  88888888875 45444332  4567888888877532111110      


Q ss_pred             CCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCc-eecC--CCCCCCCcceEec
Q 019416          184 CDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLE-SFPE--GGLPNTSLTSLLI  260 (341)
Q Consensus       184 ~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~-~~~~--~~~~~~~L~~L~l  260 (341)
                              .  .   +  ..+++|+.|+++++......|..+..+++|++|++++|.-.. .++.  ....+++|++|++
T Consensus       419 --------~--~---~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~L  483 (606)
T 3t6q_A          419 --------S--P---F--QNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVL  483 (606)
T ss_dssp             --------C--T---T--TTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEEC
T ss_pred             --------h--h---h--hCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEEC
Confidence                    0  0   1  133468888888875545556777778888888888764322 1221  1223468888888


Q ss_pred             ccCcccccc-hhhhccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          261 SECENLMSL-PHQIHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       261 ~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      ++|. ++.+ |..+..+++|+.|+++++ .+......  ...++| .|++++|......+. .+..+++|+++++++
T Consensus       484 s~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~-~~~~l~~L~~L~l~~  556 (606)
T 3t6q_A          484 SFCD-LSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEALSHLKGI-YLNLASNHISIILPS-LLPILSQQRTINLRQ  556 (606)
T ss_dssp             TTSC-CCEECTTTTTTCTTCCEEECCSS-CCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG-GHHHHHTSSEEECTT
T ss_pred             CCCc-cCccChhhhccccCCCEEECCCC-ccCcCChhHhCccccc-EEECcCCcccccCHh-hcccCCCCCEEeCCC
Confidence            8864 5555 556778888888888875 44444322  335677 888877754443333 356778888888887

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=4.9e-18  Score=164.27  Aligned_cols=108  Identities=19%  Similarity=0.176  Sum_probs=71.8

Q ss_pred             cCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccc--cchhhhccCCCcCeEeecCCCCCccCCCC--CCC
Q 019416          224 DMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLM--SLPHQIHKATSLQDLSVSGCPSLMSFPHG--GLP  299 (341)
Q Consensus       224 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~--~l~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~  299 (341)
                      .+..+++|+.|++++|.-....+.....+++|++|++++|. +.  .+|..+..+++|+.|++++| .+..+...  ...
T Consensus       416 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l  493 (570)
T 2z63_A          416 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSL  493 (570)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred             hhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCC-ccccCChhhhhcc
Confidence            45566777777777764222233333335688888888864 43  47777888888899988876 45555332  346


Q ss_pred             CCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          300 PNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       300 ~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      ++|++|++++|. ++..+...+..+++|+++++++
T Consensus       494 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~  527 (570)
T 2z63_A          494 SSLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHT  527 (570)
T ss_dssp             TTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred             cCCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecC
Confidence            789999998874 4433322468888999999888

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.80  E-value=1.7e-18  Score=168.75  Aligned_cols=123  Identities=15%  Similarity=0.164  Sum_probs=75.3

Q ss_pred             CCCCCCcCeEEcCCCCCCcccc-ccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CC
Q 019416           36 IRTGETLESLEIDNLSSLASFL-RSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YF  108 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~  108 (341)
                      +..+++|++|++++|. ++.++ ..+..+++|++|++++| .+..+    ++.  +++|++|++++| .+..++..  ..
T Consensus        71 ~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~l~~~~~~~  145 (597)
T 3oja_B           71 LDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFN-AIRYLPPHVFQN--VPLLTVLVLERN-DLSSLPRGIFHN  145 (597)
T ss_dssp             HHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCCCCCTTTTTT
T ss_pred             HccCCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCC-cCCCCCHHHHcC--CCCCCEEEeeCC-CCCCCCHHHhcc
Confidence            3456777788887753 44443 35667777888888774 34443    566  777888888775 55555542  34


Q ss_pred             CCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEeecc
Q 019416          109 PTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNC  169 (341)
Q Consensus       109 ~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~  169 (341)
                      +++|++|++++|.....    .|..+.  ++|++|+++++ .++.++. ..+++|+.|+++++
T Consensus       146 l~~L~~L~Ls~N~l~~~----~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~l~~L~~L~l~~n  202 (597)
T 3oja_B          146 TPKLTTLSMSNNNLERI----EDDTFQATTSLQNLQLSSN-RLTHVDL-SLIPSLFHANVSYN  202 (597)
T ss_dssp             CTTCCEEECCSSCCCBC----CTTTTTTCTTCCEEECTTS-CCSBCCG-GGCTTCSEEECCSS
T ss_pred             CCCCCEEEeeCCcCCCC----ChhhhhcCCcCcEEECcCC-CCCCcCh-hhhhhhhhhhcccC
Confidence            67778888777753332    333333  77777777763 4555432 33456666666553

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.80  E-value=1.3e-18  Score=156.95  Aligned_cols=225  Identities=23%  Similarity=0.374  Sum_probs=132.7

Q ss_pred             CCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccC-CCCCCCccE
Q 019416           39 GETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTLKR  114 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~  114 (341)
                      .+++++|+++++ .++.+|..+..+++|++|+++++ .+..+   ++.  +++|++|++++| .+..+|. ...+++|++
T Consensus        80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n-~l~~lp~~~~~--l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAA-GLMELPDTMQQ--FAGLETLTLARN-PLRALPASIASLNRLRE  154 (328)
T ss_dssp             STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESS-CCCCCCSCGGG--GTTCSEEEEESC-CCCCCCGGGGGCTTCCE
T ss_pred             ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCC-CccchhHHHhc--cCCCCEEECCCC-ccccCcHHHhcCcCCCE
Confidence            477888888875 55677777777888888888884 44444   677  888888888875 4556653 344778888


Q ss_pred             EEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcc
Q 019416          115 LKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGES  194 (341)
Q Consensus       115 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~  194 (341)
                      |++++|..+..    +|..++    ...+.+  .      ...+++|+.|+++++ .++.+|..+               
T Consensus       155 L~L~~n~~~~~----~p~~~~----~~~~~~--~------~~~l~~L~~L~L~~n-~l~~lp~~l---------------  202 (328)
T 4fcg_A          155 LSIRACPELTE----LPEPLA----STDASG--E------HQGLVNLQSLRLEWT-GIRSLPASI---------------  202 (328)
T ss_dssp             EEEEEETTCCC----CCSCSE----EEC-CC--C------EEESTTCCEEEEEEE-CCCCCCGGG---------------
T ss_pred             EECCCCCCccc----cChhHh----hccchh--h------hccCCCCCEEECcCC-CcCcchHhh---------------
Confidence            88888765555    554331    111100  0      012345666666554 233332210               


Q ss_pred             cccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhc
Q 019416          195 SLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIH  274 (341)
Q Consensus       195 ~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~  274 (341)
                        .     .+++|+.|+++++ .+..+|..+..+++|+.|++++|.....+|.....+++|++|++++|+..+.+|..+.
T Consensus       203 --~-----~l~~L~~L~L~~N-~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~  274 (328)
T 4fcg_A          203 --A-----NLQNLKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH  274 (328)
T ss_dssp             --G-----GCTTCCEEEEESS-CCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGG
T ss_pred             --c-----CCCCCCEEEccCC-CCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhh
Confidence              0     2234666666664 3344555566666666666666655555555444445666666666655556666666


Q ss_pred             cCCCcCeEeecCCCCCccCCCC-CCCCCccEEEee
Q 019416          275 KATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGII  308 (341)
Q Consensus       275 ~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~  308 (341)
                      .+++|++|++++|+....+|.. +..++|+.+++.
T Consensus       275 ~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~  309 (328)
T 4fcg_A          275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP  309 (328)
T ss_dssp             GCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred             cCCCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence            6666666666666666666554 334555655554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.79  E-value=2e-18  Score=173.47  Aligned_cols=130  Identities=12%  Similarity=0.022  Sum_probs=91.5

Q ss_pred             ccccCCCCCCCcCeEEcCCCCCCcc--ccccccC-------CCCccEEeccCCCCchhh-----hcccCCCCcceEeeec
Q 019416           31 DKILGIRTGETLESLEIDNLSSLAS--FLRSELA-------ATTVKQLKINKCPDLEVL-----LHRMAYTSLEYLEFSS   96 (341)
Q Consensus        31 ~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~~~~-------l~~L~~L~l~~~~~l~~~-----~~~~~l~~L~~L~l~~   96 (341)
                      ..+..++.+++|++|++++|..++.  +|..+..       +++|+.|++++| .+..+     +..  +++|+.|++++
T Consensus       506 ~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~~--L~~L~~L~Ls~  582 (876)
T 4ecn_A          506 QLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQK--MVKLGLLDCVH  582 (876)
T ss_dssp             SCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHTT--CTTCCEEECTT
T ss_pred             cChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhhc--CCCCCEEECCC
Confidence            4455678899999999998763553  6655444       459999999985 34333     667  88999999988


Q ss_pred             CCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcc--cc-cceEeecCCCCccccCCC-CCc--cccceEEeeccC
Q 019416           97 CLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKG--LA-LESLEVDGCSSLFSLPIN-QLP--ATLRHLRIVNCM  170 (341)
Q Consensus        97 ~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~-L~~L~l~~~~~l~~l~~~-~~~--~~L~~L~l~~~~  170 (341)
                      | .+..+|..+.+++|+.|++++|... .    +|..+.  ++ |+.|+++++ .++.+|.. ...  ++|+.|+++++.
T Consensus       583 N-~l~~lp~~~~L~~L~~L~Ls~N~l~-~----lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          583 N-KVRHLEAFGTNVKLTDLKLDYNQIE-E----IPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             S-CCCBCCCCCTTSEESEEECCSSCCS-C----CCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred             C-CcccchhhcCCCcceEEECcCCccc-c----chHHHhhccccCCEEECcCC-CCCcCchhhhccccCCCCEEECcCCc
Confidence            6 4557776666888999999888643 5    776666  66 888888874 46566643 222  347777777653

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.79  E-value=3.6e-18  Score=160.77  Aligned_cols=282  Identities=14%  Similarity=0.045  Sum_probs=181.8

Q ss_pred             CCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccc-cC-CCCCCCc
Q 019416           40 ETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNS-KQ-DYFPTTL  112 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~~~~L  112 (341)
                      ++|++|+++++. ++.+ |..+..+++|++|++++|.....+    +..  +++|++|++++| .+..+ +. ...+++|
T Consensus        30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L  105 (455)
T 3v47_A           30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRG--LSSLIILKLDYN-QFLQLETGAFNGLANL  105 (455)
T ss_dssp             TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTT--CTTCCEEECTTC-TTCEECTTTTTTCTTC
T ss_pred             CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccc--cccCCEEeCCCC-ccCccChhhccCcccC
Confidence            789999999874 4555 667889999999999996432232    788  999999999987 44444 32 4558999


Q ss_pred             cEEEEeCCCChHHHHHHhhhh--cc--cccceEeecCCCCccccCC---CCCccccceEEeeccCCcccc-Cc-------
Q 019416          113 KRLKICDCTNAELILKVLMDQ--KG--LALESLEVDGCSSLFSLPI---NQLPATLRHLRIVNCMNLKSL-GE-------  177 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~--~~--~~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~~l~~~-~~-------  177 (341)
                      ++|++++|.....    .+..  +.  ++|++|+++++ .++.+..   ...+++|+.|+++++. +..+ +.       
T Consensus       106 ~~L~L~~n~l~~~----~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~  179 (455)
T 3v47_A          106 EVLTLTQCNLDGA----VLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQG  179 (455)
T ss_dssp             CEEECTTSCCBTH----HHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTT
T ss_pred             CEEeCCCCCCCcc----ccCcccccCcccCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhcccc
Confidence            9999999986544    4443  33  89999999985 5655533   2457899999998864 2222 11       


Q ss_pred             ----ceeeeCCCCCCcCCCcccccccc-cccccccceEeeccCcCCCccccc----------------------------
Q 019416          178 ----SSKIRNCDSVVGPEGESSLENMT-SSHTLELRELEIWDCLELEFLPED----------------------------  224 (341)
Q Consensus       178 ----~l~l~~~~~l~~~~~~~~~~~l~-~~~~~~L~~L~l~~~~~l~~l~~~----------------------------  224 (341)
                          .+.++++.....+....+....+ ...+++|+.|+++++......|..                            
T Consensus       180 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~  259 (455)
T 3v47_A          180 KHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHT  259 (455)
T ss_dssp             CEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCC
T ss_pred             ccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchh
Confidence                22333322111100000000000 001234677777665322211111                            


Q ss_pred             ---------CC--CCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccc-hhhhccCCCcCeEeecCCCCCcc
Q 019416          225 ---------MH--NFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSL-PHQIHKATSLQDLSVSGCPSLMS  292 (341)
Q Consensus       225 ---------~~--~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~  292 (341)
                               +.  ..++|+.|+++++.-....+.....+++|++|+++++ .++.+ +..+..+++|++|++++| .+..
T Consensus       260 ~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~  337 (455)
T 3v47_A          260 NFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQN-FLGS  337 (455)
T ss_dssp             SSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCCE
T ss_pred             hhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCC-ccCC
Confidence                     11  1257888888886533333443444579999999986 46665 557888999999999885 5666


Q ss_pred             CCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          293 FPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       293 ~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      ++..  ...++|++|++++|......+. .+..+++|++|++++
T Consensus       338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~  380 (455)
T 3v47_A          338 IDSRMFENLDKLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDT  380 (455)
T ss_dssp             ECGGGGTTCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCS
T ss_pred             cChhHhcCcccCCEEECCCCcccccChh-hccccccccEEECCC
Confidence            6433  3468999999999855443344 368899999999998

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.79  E-value=8.7e-18  Score=163.85  Aligned_cols=108  Identities=22%  Similarity=0.174  Sum_probs=50.2

Q ss_pred             cCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCccccc--chhhhccCCCcCeEeecCCCCCccCCCC--CCC
Q 019416          224 DMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMS--LPHQIHKATSLQDLSVSGCPSLMSFPHG--GLP  299 (341)
Q Consensus       224 ~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~  299 (341)
                      .+..+++|+.|++++|.-....+.....+++|++|+++++. +..  +|..+..+++|+.|++++| .+..++..  ...
T Consensus       419 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l  496 (606)
T 3vq2_A          419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGVFDTL  496 (606)
T ss_dssp             TTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTC
T ss_pred             hhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCC-cCCccChhhhccc
Confidence            34444555555555543222222222223456666665543 332  3445555666666666554 33333222  224


Q ss_pred             CCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          300 PNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       300 ~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      ++|++|++++|......+. .+..+++|++|++++
T Consensus       497 ~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~l~~  530 (606)
T 3vq2_A          497 HRLQLLNMSHNNLLFLDSS-HYNQLYSLSTLDCSF  530 (606)
T ss_dssp             TTCCEEECCSSCCSCEEGG-GTTTCTTCCEEECTT
T ss_pred             ccCCEEECCCCcCCCcCHH-HccCCCcCCEEECCC
Confidence            5566666665533332222 245555555555555

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.78  E-value=1.3e-17  Score=157.70  Aligned_cols=270  Identities=16%  Similarity=0.156  Sum_probs=151.3

Q ss_pred             CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416           35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL  112 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L  112 (341)
                      ++..+++|++|++++| .++.++. +..+++|++|++++| .+...  +..  +++|++|++++| .+..++....+++|
T Consensus        63 ~~~~l~~L~~L~Ls~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~l~~L  136 (466)
T 1o6v_A           63 GVEYLNNLTQINFSNN-QLTDITP-LKNLTKLVDILMNNN-QIADITPLAN--LTNLTGLTLFNN-QITDIDPLKNLTNL  136 (466)
T ss_dssp             TGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTT--CTTCCEEECCSS-CCCCCGGGTTCTTC
T ss_pred             chhhhcCCCEEECCCC-ccCCchh-hhccccCCEEECCCC-ccccChhhcC--CCCCCEEECCCC-CCCCChHHcCCCCC
Confidence            4556777777777765 3445544 666777777777764 33333  666  777777777664 45555444556667


Q ss_pred             cEEEEeCCCChHHHHHHhhhh--------------------cc--cccceEeecCCCCccccCCCCCccccceEEeeccC
Q 019416          113 KRLKICDCTNAELILKVLMDQ--------------------KG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCM  170 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~--------------------~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~  170 (341)
                      ++|++++|. +..    ++..                    +.  ++|+.|+++++ .++.++....+++|++|+++++.
T Consensus       137 ~~L~l~~n~-l~~----~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~  210 (466)
T 1o6v_A          137 NRLELSSNT-ISD----ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQ  210 (466)
T ss_dssp             SEEEEEEEE-ECC----CGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred             CEEECCCCc-cCC----ChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCC-cCCCChhhccCCCCCEEEecCCc
Confidence            777776654 222    2221                    11  45555555543 23333333344555555555542


Q ss_pred             CccccCc--------ceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCC
Q 019416          171 NLKSLGE--------SSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSL  242 (341)
Q Consensus       171 ~l~~~~~--------~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l  242 (341)
                       +..++.        .++++++.- .      .+..+.  .+++|+.|+++++. +..++. +..+++|+.|++++|. +
T Consensus       211 -l~~~~~~~~l~~L~~L~l~~n~l-~------~~~~l~--~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l  277 (466)
T 1o6v_A          211 -ISDITPLGILTNLDELSLNGNQL-K------DIGTLA--SLTNLTDLDLANNQ-ISNLAP-LSGLTKLTELKLGANQ-I  277 (466)
T ss_dssp             -CCCCGGGGGCTTCCEEECCSSCC-C------CCGGGG--GCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-C
T ss_pred             -ccccccccccCCCCEEECCCCCc-c------cchhhh--cCCCCCEEECCCCc-cccchh-hhcCCCCCEEECCCCc-c
Confidence             221111        222222211 0      001111  34457777777653 233322 5666777777777753 3


Q ss_pred             ceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCCcccccccc
Q 019416          243 ESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELH  322 (341)
Q Consensus       243 ~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~  322 (341)
                      ..++. ...+++|++|+++++ .++.++. +..+++|+.|++++| .+..++.....++|+.|++++|. +...+  .+.
T Consensus       278 ~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l~~n~-l~~~~--~l~  350 (466)
T 1o6v_A          278 SNISP-LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNK-VSDVS--SLA  350 (466)
T ss_dssp             CCCGG-GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEECCSSC-CCCCG--GGT
T ss_pred             Ccccc-ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCC-cCCCchhhccCccCCEeECCCCc-cCCch--hhc
Confidence            33333 223458888888875 4666654 677888888888875 45444433446788888888874 33333  357


Q ss_pred             CCCceeEEEEeCCCC
Q 019416          323 KLKHLNKYTILGGLP  337 (341)
Q Consensus       323 ~~~~L~~l~l~~~C~  337 (341)
                      ++++|+.|++++ |+
T Consensus       351 ~l~~L~~L~l~~-n~  364 (466)
T 1o6v_A          351 NLTNINWLSAGH-NQ  364 (466)
T ss_dssp             TCTTCCEEECCS-SC
T ss_pred             cCCCCCEEeCCC-Cc
Confidence            888999999887 64

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.78  E-value=2.1e-17  Score=152.53  Aligned_cols=250  Identities=16%  Similarity=0.120  Sum_probs=179.8

Q ss_pred             CCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CC
Q 019416           35 GIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DY  107 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~  107 (341)
                      .+..+++|++|++++|. ++.+ +..+..+++|++|++++| .+..+    +..  +++|++|+++++ .+..++.  ..
T Consensus        88 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~  162 (390)
T 3o6n_A           88 AFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHN--TPKLTTLSMSNN-NLERIEDDTFQ  162 (390)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCCBCCTTTTS
T ss_pred             hccCCCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCC-ccCcCCHHHhcC--CCCCcEEECCCC-ccCccChhhcc
Confidence            57889999999999874 5555 445778999999999985 55555    577  999999999986 5555543  34


Q ss_pred             CCCCccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc-------cee
Q 019416          108 FPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE-------SSK  180 (341)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~-------~l~  180 (341)
                      .+++|++|++++|.. ..    ++....++|+.|+++++ .++.++   .+++|+.|+++++. +..++.       .++
T Consensus       163 ~l~~L~~L~l~~n~l-~~----~~~~~l~~L~~L~l~~n-~l~~~~---~~~~L~~L~l~~n~-l~~~~~~~~~~L~~L~  232 (390)
T 3o6n_A          163 ATTSLQNLQLSSNRL-TH----VDLSLIPSLFHANVSYN-LLSTLA---IPIAVEELDASHNS-INVVRGPVNVELTILK  232 (390)
T ss_dssp             SCTTCCEEECCSSCC-SB----CCGGGCTTCSEEECCSS-CCSEEE---CCSSCSEEECCSSC-CCEEECCCCSSCCEEE
T ss_pred             CCCCCCEEECCCCcC-Cc----cccccccccceeecccc-cccccC---CCCcceEEECCCCe-eeeccccccccccEEE
Confidence            579999999999863 33    32221288888888773 454442   34567777777643 333322       333


Q ss_pred             eeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEec
Q 019416          181 IRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLI  260 (341)
Q Consensus       181 l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l  260 (341)
                      ++++.-...    ..   +  ..+++|+.|+++++......|..+..+++|+.|+++++ .+..++.....+++|++|++
T Consensus       233 l~~n~l~~~----~~---l--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L  302 (390)
T 3o6n_A          233 LQHNNLTDT----AW---L--LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDL  302 (390)
T ss_dssp             CCSSCCCCC----GG---G--GGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSS-CCCEEECSSSCCTTCCEEEC
T ss_pred             CCCCCCccc----HH---H--cCCCCccEEECCCCcCCCcChhHccccccCCEEECCCC-cCcccCcccCCCCCCCEEEC
Confidence            333321111    01   1  14557999999997554445788899999999999996 56777766556689999999


Q ss_pred             ccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCC
Q 019416          261 SECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCEN  312 (341)
Q Consensus       261 ~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~  312 (341)
                      +++ .++.+|..+..+++|+.|+++++ .+..++. ...++|++|++.+++.
T Consensus       303 ~~n-~l~~~~~~~~~l~~L~~L~L~~N-~i~~~~~-~~~~~L~~L~l~~N~~  351 (390)
T 3o6n_A          303 SHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHNDW  351 (390)
T ss_dssp             CSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSCE
T ss_pred             CCC-cceecCccccccCcCCEEECCCC-ccceeCc-hhhccCCEEEcCCCCc
Confidence            997 68899988889999999999985 5777763 4568999999999753

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.78  E-value=2.5e-17  Score=157.66  Aligned_cols=122  Identities=13%  Similarity=0.002  Sum_probs=80.3

Q ss_pred             CCCchhhhhhcccCCCc--cc-cCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh-hcccCCCCc
Q 019416           15 APVPKNFLALALFPDED--KI-LGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL-LHRMAYTSL   89 (341)
Q Consensus        15 ~~~~~~~~~l~~~~~~~--~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L   89 (341)
                      ..+++.+..+.+..+..  .. ..+..+++|++|++++|. ++.+ |..+.++++|++|++++ +.+..+ ...  +++|
T Consensus        17 ~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~--l~~L   92 (520)
T 2z7x_B           17 KDLSQKTTILNISQNYISELWTSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSH-NKLVKISCHP--TVNL   92 (520)
T ss_dssp             CSCCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCS-SCCCEEECCC--CCCC
T ss_pred             ccccccccEEECCCCcccccChhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCC-CceeecCccc--cCCc
Confidence            34446667776655431  11 356789999999999864 4554 66788899999999998 456655 336  8999


Q ss_pred             ceEeeecCCCCcc--cc-CCCCCCCccEEEEeCCCChHHHHHHhhhhccccc--ceEeecCC
Q 019416           90 EYLEFSSCLFFSN--SK-QDYFPTTLKRLKICDCTNAELILKVLMDQKGLAL--ESLEVDGC  146 (341)
Q Consensus        90 ~~L~l~~~~~l~~--~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~  146 (341)
                      ++|++++| .+..  +| ..+.+++|++|++++|.....    ....+ ++|  ++|+++++
T Consensus        93 ~~L~L~~N-~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~----~~~~l-~~L~L~~L~l~~n  148 (520)
T 2z7x_B           93 KHLDLSFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKS----SVLPI-AHLNISKVLLVLG  148 (520)
T ss_dssp             SEEECCSS-CCSSCCCCGGGGGCTTCCEEEEEESSCCGG----GGGGG-TTSCEEEEEEEEC
T ss_pred             cEEeccCC-ccccccchhhhccCCcceEEEecCcccchh----hcccc-ccceeeEEEeecc
Confidence            99999886 4443  33 244578888888888763221    11111 555  77777664

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.78  E-value=5.1e-17  Score=153.57  Aligned_cols=269  Identities=19%  Similarity=0.133  Sum_probs=181.0

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccc----------
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNS----------  103 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~----------  103 (341)
                      +..+++|++|++++| .++.++. +..+++|++|++++| .+..+  +..  +++|++|++++| .+..+          
T Consensus        86 ~~~l~~L~~L~l~~n-~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~~~~--l~~L~~L~l~~n-~l~~~~~~~~l~~L~  159 (466)
T 1o6v_A           86 LKNLTKLVDILMNNN-QIADITP-LANLTNLTGLTLFNN-QITDIDPLKN--LTNLNRLELSSN-TISDISALSGLTSLQ  159 (466)
T ss_dssp             GTTCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCCGGGTT--CTTCSEEEEEEE-EECCCGGGTTCTTCS
T ss_pred             hhccccCCEEECCCC-ccccChh-hcCCCCCCEEECCCC-CCCCChHHcC--CCCCCEEECCCC-ccCCChhhccCCccc
Confidence            666777777777765 3444444 566777777777764 34333  555  666666666654 22222          


Q ss_pred             -----------cCCCCCCCccEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeeccCC
Q 019416          104 -----------KQDYFPTTLKRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMN  171 (341)
Q Consensus       104 -----------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~  171 (341)
                                 +....+++|++|++++|. +..    ++.... ++|++|+++++ .+..++....+++|+.|+++++. 
T Consensus       160 ~L~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~----~~~l~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~-  232 (466)
T 1o6v_A          160 QLSFGNQVTDLKPLANLTTLERLDISSNK-VSD----ISVLAKLTNLESLIATNN-QISDITPLGILTNLDELSLNGNQ-  232 (466)
T ss_dssp             EEEEEESCCCCGGGTTCTTCCEEECCSSC-CCC----CGGGGGCTTCSEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-
T ss_pred             EeecCCcccCchhhccCCCCCEEECcCCc-CCC----ChhhccCCCCCEEEecCC-cccccccccccCCCCEEECCCCC-
Confidence                       223446888889998886 333    433222 99999999985 55555445667899999999863 


Q ss_pred             ccccCc--------ceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCc
Q 019416          172 LKSLGE--------SSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLE  243 (341)
Q Consensus       172 l~~~~~--------~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~  243 (341)
                      +..++.        .++++++.-...         .+...+++|+.|+++++. +..++. +..+++|+.|++++|. +.
T Consensus       233 l~~~~~l~~l~~L~~L~l~~n~l~~~---------~~~~~l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~L~~n~-l~  300 (466)
T 1o6v_A          233 LKDIGTLASLTNLTDLDLANNQISNL---------APLSGLTKLTELKLGANQ-ISNISP-LAGLTALTNLELNENQ-LE  300 (466)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCCC---------GGGTTCTTCSEEECCSSC-CCCCGG-GTTCTTCSEEECCSSC-CS
T ss_pred             cccchhhhcCCCCCEEECCCCccccc---------hhhhcCCCCCEEECCCCc-cCcccc-ccCCCccCeEEcCCCc-cc
Confidence            443332        444444432111         111245679999999964 455544 7788999999999974 44


Q ss_pred             eecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCCccccccccC
Q 019416          244 SFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHK  323 (341)
Q Consensus       244 ~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~  323 (341)
                      .++. ...+++|++|+++++ .++.++. +..+++|+.|++++| .+..++.-...++|+.|++++|......+   +..
T Consensus       301 ~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~---~~~  373 (466)
T 1o6v_A          301 DISP-ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNN-KVSDVSSLANLTNINWLSAGHNQISDLTP---LAN  373 (466)
T ss_dssp             CCGG-GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCBCGG---GTT
T ss_pred             Cchh-hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCC-ccCCchhhccCCCCCEEeCCCCccCccch---hhc
Confidence            4443 223479999999997 4776664 788999999999986 56666544567899999999986544332   488


Q ss_pred             CCceeEEEEeCCCC
Q 019416          324 LKHLNKYTILGGLP  337 (341)
Q Consensus       324 ~~~L~~l~l~~~C~  337 (341)
                      +++|+.+++++ |+
T Consensus       374 l~~L~~L~l~~-n~  386 (466)
T 1o6v_A          374 LTRITQLGLND-QA  386 (466)
T ss_dssp             CTTCCEEECCC-EE
T ss_pred             CCCCCEEeccC-Cc
Confidence            99999999998 63

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.78  E-value=6.7e-18  Score=152.38  Aligned_cols=226  Identities=22%  Similarity=0.277  Sum_probs=156.6

Q ss_pred             CCCcceEeeecCCCCccccC-CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCcccc
Q 019416           86 YTSLEYLEFSSCLFFSNSKQ-DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATL  161 (341)
Q Consensus        86 l~~L~~L~l~~~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L  161 (341)
                      ..++++|+++++ .+..+|. ...+++|++|++++|... .    +|..++  ++|++|+++++ .++.+|.. ..+++|
T Consensus        80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~l~-~----lp~~~~~l~~L~~L~Ls~n-~l~~lp~~l~~l~~L  152 (328)
T 4fcg_A           80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLM-E----LPDTMQQFAGLETLTLARN-PLRALPASIASLNRL  152 (328)
T ss_dssp             STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSCCC-C----CCSCGGGGTTCSEEEEESC-CCCCCCGGGGGCTTC
T ss_pred             ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCCcc-c----hhHHHhccCCCCEEECCCC-ccccCcHHHhcCcCC
Confidence            355556666553 3444443 222556666666665422 3    554444  66666666653 44455443 445677


Q ss_pred             ceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCC
Q 019416          162 RHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPS  241 (341)
Q Consensus       162 ~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~  241 (341)
                      +.|++++|..+..+|..+.-....      +  .   +.  .+++|+.|+++++ .+..+|..+..+++|++|++++|. 
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~------~--~---~~--~l~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~-  217 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDAS------G--E---HQ--GLVNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSP-  217 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-C------C--C---EE--ESTTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSC-
T ss_pred             CEEECCCCCCccccChhHhhccch------h--h---hc--cCCCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCC-
Confidence            777777766555555422110000      0  0   11  3447999999996 566889999999999999999974 


Q ss_pred             CceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCCcccccc
Q 019416          242 LESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWE  320 (341)
Q Consensus       242 l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~  320 (341)
                      +..++.....+++|++|++++|...+.+|..+..+++|++|++++|+....++.. ...++|++|++++|+.....|.+ 
T Consensus       218 l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~-  296 (328)
T 4fcg_A          218 LSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL-  296 (328)
T ss_dssp             CCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGG-
T ss_pred             CCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHH-
Confidence            5556654445679999999998877888988999999999999999888888865 45789999999999999888875 


Q ss_pred             ccCCCceeEEEEeC
Q 019416          321 LHKLKHLNKYTILG  334 (341)
Q Consensus       321 i~~~~~L~~l~l~~  334 (341)
                      +.++++++.+.+..
T Consensus       297 l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          297 IAQLPANCIILVPP  310 (328)
T ss_dssp             GGGSCTTCEEECCG
T ss_pred             HhhccCceEEeCCH
Confidence            89999999998765

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.77  E-value=1.6e-17  Score=156.62  Aligned_cols=270  Identities=15%  Similarity=0.157  Sum_probs=123.4

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccCCCCCCCccE
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKR  114 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~  114 (341)
                      +..+++|++|++++| .++.++  +..+++|++|++++| .+..+ ++.  +++|++|++++| .+..++ .+.+++|++
T Consensus        60 l~~l~~L~~L~Ls~n-~l~~~~--~~~l~~L~~L~Ls~N-~l~~~~~~~--l~~L~~L~L~~N-~l~~l~-~~~l~~L~~  131 (457)
T 3bz5_A           60 IEKLTGLTKLICTSN-NITTLD--LSQNTNLTYLACDSN-KLTNLDVTP--LTKLTYLNCDTN-KLTKLD-VSQNPLLTY  131 (457)
T ss_dssp             GGGCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCCCTT--CTTCCEEECCSS-CCSCCC-CTTCTTCCE
T ss_pred             hcccCCCCEEEccCC-cCCeEc--cccCCCCCEEECcCC-CCceeecCC--CCcCCEEECCCC-cCCeec-CCCCCcCCE
Confidence            334444444444443 233332  334444555555442 23333 444  455555555443 333333 233445555


Q ss_pred             EEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCc-CCCc
Q 019416          115 LKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG-PEGE  193 (341)
Q Consensus       115 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~-~~~~  193 (341)
                      |++++|. +..    ++-.-.++|++|+++++..+..++ ...+++|+.|+++++ .++.++    ++.++.++. ....
T Consensus       132 L~l~~N~-l~~----l~l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~ls~n-~l~~l~----l~~l~~L~~L~l~~  200 (457)
T 3bz5_A          132 LNCARNT-LTE----IDVSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDCSFN-KITELD----VSQNKLLNRLNCDT  200 (457)
T ss_dssp             EECTTSC-CSC----CCCTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEECCSS-CCCCCC----CTTCTTCCEEECCS
T ss_pred             EECCCCc-cce----eccccCCcCCEEECCCCCcccccc-cccCCcCCEEECCCC-ccceec----cccCCCCCEEECcC
Confidence            5555443 222    210000455555555544444332 123345555555543 233322    233333332 1111


Q ss_pred             ccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCC--------CCCcceEecccCcc
Q 019416          194 SSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLP--------NTSLTSLLISECEN  265 (341)
Q Consensus       194 ~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~--------~~~L~~L~l~~~~~  265 (341)
                      ..+..++...+++|+.|+++++ .+..+|  +..+++|+.|+++++ .++.++...++        ..+|+.|++++|..
T Consensus       201 N~l~~~~l~~l~~L~~L~Ls~N-~l~~ip--~~~l~~L~~L~l~~N-~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~  276 (457)
T 3bz5_A          201 NNITKLDLNQNIQLTFLDCSSN-KLTEID--VTPLTQLTYFDCSVN-PLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQ  276 (457)
T ss_dssp             SCCSCCCCTTCTTCSEEECCSS-CCSCCC--CTTCTTCSEEECCSS-CCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred             CcCCeeccccCCCCCEEECcCC-cccccC--ccccCCCCEEEeeCC-cCCCcCHHHCCCCCEEeccCCCCCEEECCCCcc
Confidence            1111122224446777777764 344454  566677777777765 34444433222        01333444444433


Q ss_pred             cccchhhhccCCCcCeEeecCCCCCccCCCC---------CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          266 LMSLPHQIHKATSLQDLSVSGCPSLMSFPHG---------GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       266 l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~---------~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      +..+|  ...+++|+.|++++|..+..++..         ...++|++|+++++. ++..   .+..+++|+.|++++
T Consensus       277 ~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~-l~~l---~l~~l~~L~~L~l~~  348 (457)
T 3bz5_A          277 LIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE-LTEL---DVSHNTKLKSLSCVN  348 (457)
T ss_dssp             CCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-CSCC---CCTTCTTCSEEECCS
T ss_pred             CCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-cccc---ccccCCcCcEEECCC
Confidence            33343  345677888888777655544431         112456666665542 2323   257778888888876

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.77  E-value=7.4e-18  Score=158.85  Aligned_cols=271  Identities=18%  Similarity=0.141  Sum_probs=175.5

Q ss_pred             cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416           34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL  112 (341)
Q Consensus        34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L  112 (341)
                      ..++.+++|++|+++++ .++.+| .+..+++|++|++++| .+..+ ++.  +++|++|++++| .+..++ .+.+++|
T Consensus        36 ~~~~~l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n-~l~~~~~~~--l~~L~~L~Ls~N-~l~~~~-~~~l~~L  108 (457)
T 3bz5_A           36 ISEEQLATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSN-NITTLDLSQ--NTNLTYLACDSN-KLTNLD-VTPLTKL  108 (457)
T ss_dssp             EEHHHHTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSS-CCSCCCCTT--CTTCSEEECCSS-CCSCCC-CTTCTTC
T ss_pred             cChhHcCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCC-cCCeEcccc--CCCCCEEECcCC-CCceee-cCCCCcC
Confidence            45667999999999986 566666 5788999999999995 56666 888  999999999986 566665 5668999


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCc-
Q 019416          113 KRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG-  189 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~-  189 (341)
                      ++|++++|. +..    ++  ++  ++|++|++++ +.++.++ ...+++|+.|+++++..+..++    +..++.++. 
T Consensus       109 ~~L~L~~N~-l~~----l~--~~~l~~L~~L~l~~-N~l~~l~-l~~l~~L~~L~l~~n~~~~~~~----~~~l~~L~~L  175 (457)
T 3bz5_A          109 TYLNCDTNK-LTK----LD--VSQNPLLTYLNCAR-NTLTEID-VSHNTQLTELDCHLNKKITKLD----VTPQTQLTTL  175 (457)
T ss_dssp             CEEECCSSC-CSC----CC--CTTCTTCCEEECTT-SCCSCCC-CTTCTTCCEEECTTCSCCCCCC----CTTCTTCCEE
T ss_pred             CEEECCCCc-CCe----ec--CCCCCcCCEEECCC-Cccceec-cccCCcCCEEECCCCCcccccc----cccCCcCCEE
Confidence            999999986 444    44  33  9999999988 4677665 3456799999999886555442    223333332 


Q ss_pred             CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccc
Q 019416          190 PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSL  269 (341)
Q Consensus       190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l  269 (341)
                      ......+..+|...+++|+.|+++++. +..+  .+..+++|+.|+++++ .++.+|..  .+++|++|+++++ .++.+
T Consensus       176 ~ls~n~l~~l~l~~l~~L~~L~l~~N~-l~~~--~l~~l~~L~~L~Ls~N-~l~~ip~~--~l~~L~~L~l~~N-~l~~~  248 (457)
T 3bz5_A          176 DCSFNKITELDVSQNKLLNRLNCDTNN-ITKL--DLNQNIQLTFLDCSSN-KLTEIDVT--PLTQLTYFDCSVN-PLTEL  248 (457)
T ss_dssp             ECCSSCCCCCCCTTCTTCCEEECCSSC-CSCC--CCTTCTTCSEEECCSS-CCSCCCCT--TCTTCSEEECCSS-CCSCC
T ss_pred             ECCCCccceeccccCCCCCEEECcCCc-CCee--ccccCCCCCEEECcCC-cccccCcc--ccCCCCEEEeeCC-cCCCc
Confidence            111111222333345568888887753 4444  3667788888888875 35555522  3458888888875 46665


Q ss_pred             hhhhccCCCcC----------eEeecCCCCCccCCCCCCCCCccEEEeecCCCCCcccc-------ccccCCCceeEEEE
Q 019416          270 PHQIHKATSLQ----------DLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQ-------WELHKLKHLNKYTI  332 (341)
Q Consensus       270 ~~~l~~l~~L~----------~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~-------~~i~~~~~L~~l~l  332 (341)
                      |  ...+++|+          .+++++|.....++. +..++|+.|++++|..+...+.       ..+..+++|++|++
T Consensus       249 ~--~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~-~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L  325 (457)
T 3bz5_A          249 D--VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQA-EGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYL  325 (457)
T ss_dssp             C--CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC-TTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEEC
T ss_pred             C--HHHCCCCCEEeccCCCCCEEECCCCccCCcccc-cccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEEC
Confidence            4  23444444          444444443333332 2347888888888865542211       01344556666665


Q ss_pred             eC
Q 019416          333 LG  334 (341)
Q Consensus       333 ~~  334 (341)
                      ++
T Consensus       326 ~~  327 (457)
T 3bz5_A          326 NN  327 (457)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.76  E-value=9.5e-17  Score=162.42  Aligned_cols=308  Identities=14%  Similarity=0.128  Sum_probs=197.0

Q ss_pred             CCCCCCCCCCchhhhhhcccCCC---ccccCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh---
Q 019416            8 PFDLEPQAPVPKNFLALALFPDE---DKILGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL---   80 (341)
Q Consensus         8 ~~~~~~~~~~~~~~~~l~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~---   80 (341)
                      .+..-|.  .|+.+..|.+..+.   .....+..+++|++|++++|.....+ |..+..+++|++|++++| .+..+   
T Consensus        15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N-~l~~~~p~   91 (844)
T 3j0a_A           15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS-KIYFLHPD   91 (844)
T ss_dssp             CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC-CCCEECTT
T ss_pred             CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC-cCcccCHh
Confidence            3444454  77788888876542   22346888999999999998666666 566888999999999985 44443   


Q ss_pred             -hcccCCCCcceEeeecCCCCccccC---CCCCCCccEEEEeCCCChHHHHHHhh-hhcc--cccceEeecCCCCccccC
Q 019416           81 -LHRMAYTSLEYLEFSSCLFFSNSKQ---DYFPTTLKRLKICDCTNAELILKVLM-DQKG--LALESLEVDGCSSLFSLP  153 (341)
Q Consensus        81 -~~~~~l~~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~--~~L~~L~l~~~~~l~~l~  153 (341)
                       ++.  +++|++|++++|.....++.   ...+++|++|++++|.....    .+ ..++  ++|++|+++++ .++...
T Consensus        92 ~~~~--l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~----~~~~~~~~L~~L~~L~Ls~N-~i~~~~  164 (844)
T 3j0a_A           92 AFQG--LFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL----YLHPSFGKLNSLKSIDFSSN-QIFLVC  164 (844)
T ss_dssp             SSCS--CSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC----CCCGGGGTCSSCCEEEEESS-CCCCCC
T ss_pred             HccC--CcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCccccc----ccchhHhhCCCCCEEECCCC-cCCeeC
Confidence             888  99999999998744333443   34589999999999874332    22 2333  99999999884 454433


Q ss_pred             CC--CCc--cccceEEeeccCCccccC---------------cceeeeCCCCCCc-CCCc------cc------------
Q 019416          154 IN--QLP--ATLRHLRIVNCMNLKSLG---------------ESSKIRNCDSVVG-PEGE------SS------------  195 (341)
Q Consensus       154 ~~--~~~--~~L~~L~l~~~~~l~~~~---------------~~l~l~~~~~l~~-~~~~------~~------------  195 (341)
                      ..  ..+  ++|+.|+++++.-....+               ..++++++..... +...      ..            
T Consensus       165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~  244 (844)
T 3j0a_A          165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMG  244 (844)
T ss_dssp             SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCB
T ss_pred             HHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccc
Confidence            32  122  678888887754222111               1344444421111 0000      00            


Q ss_pred             -------ccc-----cccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEeccc
Q 019416          196 -------LEN-----MTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISE  262 (341)
Q Consensus       196 -------~~~-----l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~  262 (341)
                             +..     +..-..++|+.|+++++......+..+..+++|+.|+++++. +..++. ....+++|++|++++
T Consensus       245 ~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~  323 (844)
T 3j0a_A          245 AGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSY  323 (844)
T ss_dssp             CSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCC-CCEECTTTTTTCSSCCEEEEES
T ss_pred             ccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCc-CCCCChHHhcCCCCCCEEECCC
Confidence                   000     000012468888888765444446777888888999988864 444443 333456888998888


Q ss_pred             Ccccccc-hhhhccCCCcCeEeecCCCCCccCCCCC--CCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          263 CENLMSL-PHQIHKATSLQDLSVSGCPSLMSFPHGG--LPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       263 ~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      + .++.+ +..+..+++|+.|+++++ .+..++...  ..++|++|+++++. ++.     +..+++|+.+++++
T Consensus       324 N-~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~-----i~~~~~L~~L~l~~  390 (844)
T 3j0a_A          324 N-LLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTT-----IHFIPSIPDIFLSG  390 (844)
T ss_dssp             C-CCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCC-----CSSCCSCSEEEEES
T ss_pred             C-CCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCc-----ccCCCCcchhccCC
Confidence            6 46655 557788888999998875 566666542  36788999988864 332     23366777777777

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.76  E-value=1.1e-16  Score=154.73  Aligned_cols=102  Identities=19%  Similarity=0.152  Sum_probs=64.5

Q ss_pred             CCCchhhhhhcccCCC--cc-ccCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh-hcccCCCCc
Q 019416           15 APVPKNFLALALFPDE--DK-ILGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL-LHRMAYTSL   89 (341)
Q Consensus        15 ~~~~~~~~~l~~~~~~--~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L   89 (341)
                      ..+|+.+..|.+..+.  .. ...+..+++|++|++++| .++.+ |..+.++++|++|++++ +.+..+ ...  +++|
T Consensus        48 ~~~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~--l~~L  123 (562)
T 3a79_B           48 KDLPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLFNQDLEYLDVSH-NRLQNISCCP--MASL  123 (562)
T ss_dssp             TTSCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTTCTTCCEEECTT-SCCCEECSCC--CTTC
T ss_pred             CCCCCCcCEEECCCCCccccChhhhccCCCccEEECCCC-CCCcCCHHHhCCCCCCCEEECCC-CcCCccCccc--cccC
Confidence            3345566666664432  11 135677888888888876 44454 55577788888888887 445555 335  7888


Q ss_pred             ceEeeecCCCCcccc---CCCCCCCccEEEEeCCC
Q 019416           90 EYLEFSSCLFFSNSK---QDYFPTTLKRLKICDCT  121 (341)
Q Consensus        90 ~~L~l~~~~~l~~~~---~~~~~~~L~~L~l~~~~  121 (341)
                      ++|++++| .+..++   ..+.+++|++|+++++.
T Consensus       124 ~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          124 RHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             SEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             CEEECCCC-CccccCchHhhcccCcccEEecCCCc
Confidence            88888775 454443   23346777888777765

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.76  E-value=5.9e-17  Score=157.82  Aligned_cols=249  Identities=16%  Similarity=0.132  Sum_probs=175.0

Q ss_pred             CCCCCCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CC
Q 019416           35 GIRTGETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DY  107 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~  107 (341)
                      .++.+++|++|++++|. ++.+++ .+..+++|++|++++| .+..+    ++.  +++|++|++++| .+..++.  ..
T Consensus        94 ~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~~~~  168 (597)
T 3oja_B           94 AFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERN-DLSSLPRGIFHN--TPKLTTLSMSNN-NLERIEDDTFQ  168 (597)
T ss_dssp             TTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCCBCCTTTTT
T ss_pred             HhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCC-CCCCCCHHHhcc--CCCCCEEEeeCC-cCCCCChhhhh
Confidence            67889999999999875 556654 4678999999999995 55555    678  999999999986 5555543  45


Q ss_pred             CCCCccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc-------cee
Q 019416          108 FPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE-------SSK  180 (341)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~-------~l~  180 (341)
                      .+++|++|++++|. +..    ++....++|+.|+++++ .++.++   .+++|+.|+++++. +..++.       .+.
T Consensus       169 ~l~~L~~L~L~~N~-l~~----~~~~~l~~L~~L~l~~n-~l~~l~---~~~~L~~L~ls~n~-l~~~~~~~~~~L~~L~  238 (597)
T 3oja_B          169 ATTSLQNLQLSSNR-LTH----VDLSLIPSLFHANVSYN-LLSTLA---IPIAVEELDASHNS-INVVRGPVNVELTILK  238 (597)
T ss_dssp             TCTTCCEEECTTSC-CSB----CCGGGCTTCSEEECCSS-CCSEEE---CCTTCSEEECCSSC-CCEEECSCCSCCCEEE
T ss_pred             cCCcCcEEECcCCC-CCC----cChhhhhhhhhhhcccC-cccccc---CCchhheeeccCCc-ccccccccCCCCCEEE
Confidence            58999999999986 333    33222288999998874 554443   45578888887753 333322       333


Q ss_pred             eeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEec
Q 019416          181 IRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLI  260 (341)
Q Consensus       181 l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l  260 (341)
                      ++++... .+   ..+.     .+++|+.|+++++......|..+..+++|+.|++++| .+..++.....+++|++|++
T Consensus       239 L~~n~l~-~~---~~l~-----~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L  308 (597)
T 3oja_B          239 LQHNNLT-DT---AWLL-----NYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNLYGQPIPTLKVLDL  308 (597)
T ss_dssp             CCSSCCC-CC---GGGG-----GCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEECSSSCCTTCCEEEC
T ss_pred             CCCCCCC-CC---hhhc-----cCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCcccccCCCCcEEEC
Confidence            3333211 11   0111     3456889999887554555778888889999999885 46666665555679999999


Q ss_pred             ccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCC
Q 019416          261 SECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCE  311 (341)
Q Consensus       261 ~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~  311 (341)
                      +++ .+..+|..+..+++|+.|++++| .+..++. ...++|+.|++++++
T Consensus       309 s~N-~l~~i~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~L~~L~l~~N~  356 (597)
T 3oja_B          309 SHN-HLLHVERNQPQFDRLENLYLDHN-SIVTLKL-STHHTLKNLTLSHND  356 (597)
T ss_dssp             CSS-CCCCCGGGHHHHTTCSEEECCSS-CCCCCCC-CTTCCCSEEECCSSC
T ss_pred             CCC-CCCccCcccccCCCCCEEECCCC-CCCCcCh-hhcCCCCEEEeeCCC
Confidence            986 57788888888889999999885 4666653 345789999998875

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.75  E-value=4.5e-17  Score=160.93  Aligned_cols=145  Identities=16%  Similarity=0.141  Sum_probs=87.0

Q ss_pred             CCCchhhhhhcccCCC--ccc-cCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCC
Q 019416           15 APVPKNFLALALFPDE--DKI-LGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAY   86 (341)
Q Consensus        15 ~~~~~~~~~l~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l   86 (341)
                      ..+|..+..+.+..+.  ... ..+..+++|++|+++++. ++.+ |..+..+++|++|++++| .+..+    ++.  +
T Consensus        21 ~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~--l   96 (680)
T 1ziw_A           21 DDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAF--C   96 (680)
T ss_dssp             SCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTT--C
T ss_pred             cccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCC-ccCccChhhhcc--C
Confidence            3455666666665432  111 246677888888888754 3443 444666788888888774 44433    666  7


Q ss_pred             CCcceEeeecCCCCccccC--CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC----CCc
Q 019416           87 TSLEYLEFSSCLFFSNSKQ--DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN----QLP  158 (341)
Q Consensus        87 ~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~----~~~  158 (341)
                      ++|++|++++| .+..++.  ...+++|++|++++|.....    .+..++  ++|++|+++++ .++.++..    ...
T Consensus        97 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~  170 (680)
T 1ziw_A           97 TNLTELHLMSN-SIQKIKNNPFVKQKNLITLDLSHNGLSST----KLGTQVQLENLQELLLSNN-KIQALKSEELDIFAN  170 (680)
T ss_dssp             TTCSEEECCSS-CCCCCCSCTTTTCTTCCEEECCSSCCSCC----CCCSSSCCTTCCEEECCSS-CCCCBCHHHHGGGTT
T ss_pred             CCCCEEECCCC-ccCccChhHccccCCCCEEECCCCccccc----CchhhcccccCCEEEccCC-cccccCHHHhhcccc
Confidence            78888888775 4555543  33467788888877753332    333333  77777777763 44444332    123


Q ss_pred             cccceEEeecc
Q 019416          159 ATLRHLRIVNC  169 (341)
Q Consensus       159 ~~L~~L~l~~~  169 (341)
                      ++|+.|+++++
T Consensus       171 ~~L~~L~L~~n  181 (680)
T 1ziw_A          171 SSLKKLELSSN  181 (680)
T ss_dssp             CEESEEECTTC
T ss_pred             ccccEEECCCC
Confidence            56777777765

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.74  E-value=3.5e-18  Score=153.20  Aligned_cols=243  Identities=13%  Similarity=0.064  Sum_probs=174.8

Q ss_pred             CCcCeEEcCCCCCCc--cccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC-CCCCCCc
Q 019416           40 ETLESLEIDNLSSLA--SFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ-DYFPTTL  112 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~-~~~~~~L  112 (341)
                      .++++|+++++....  .+|..+..+++|++|++++++.+...    +..  +++|++|+++++.....+|. ...+++|
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~--l~~L~~L~Ls~n~l~~~~p~~~~~l~~L  127 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--LTQLHYLYITHTNVSGAIPDFLSQIKTL  127 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG--CTTCSEEEEEEECCEEECCGGGGGCTTC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc--CCCCCEEECcCCeeCCcCCHHHhCCCCC
Confidence            689999999875544  57888889999999999964555433    888  99999999998643335554 4558999


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCcc-ccCCC-CCcc-ccceEEeeccCCccccCcceeeeCCCCC
Q 019416          113 KRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLF-SLPIN-QLPA-TLRHLRIVNCMNLKSLGESSKIRNCDSV  187 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~-~l~~~-~~~~-~L~~L~l~~~~~l~~~~~~l~l~~~~~l  187 (341)
                      ++|++++|.....    +|..+.  ++|++|+++++ .++ .+|.. ..++ +|+.|+++++.--..+|..         
T Consensus       128 ~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~L~~N-~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~---------  193 (313)
T 1ogq_A          128 VTLDFSYNALSGT----LPPSISSLPNLVGITFDGN-RISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT---------  193 (313)
T ss_dssp             CEEECCSSEEESC----CCGGGGGCTTCCEEECCSS-CCEEECCGGGGCCCTTCCEEECCSSEEEEECCGG---------
T ss_pred             CEEeCCCCccCCc----CChHHhcCCCCCeEECcCC-cccCcCCHHHhhhhhcCcEEECcCCeeeccCChH---------
Confidence            9999999874434    666665  99999999885 444 55544 3344 8999999876321122221         


Q ss_pred             CcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccc
Q 019416          188 VGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLM  267 (341)
Q Consensus       188 ~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~  267 (341)
                                 +.  .+ +|+.|+++++......|..+..+++|+.|+++++.-....+. ...+++|++|+++++. ++
T Consensus       194 -----------~~--~l-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~-l~  257 (313)
T 1ogq_A          194 -----------FA--NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNR-IY  257 (313)
T ss_dssp             -----------GG--GC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSC-CE
T ss_pred             -----------Hh--CC-cccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCc-cc
Confidence                       11  22 289999998765456678888899999999998653323333 2334799999999865 55


Q ss_pred             -cchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCC
Q 019416          268 -SLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLI  314 (341)
Q Consensus       268 -~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~  314 (341)
                       .+|..+..+++|++|+++++.--..+|..+..++|+.+++.+++.+.
T Consensus       258 ~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc  305 (313)
T 1ogq_A          258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             ECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             CcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCcc
Confidence             78888899999999999886433367665556788888888776444

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.74  E-value=3.3e-16  Score=154.77  Aligned_cols=126  Identities=12%  Similarity=0.133  Sum_probs=65.5

Q ss_pred             ccccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCC---------CCCCCCcceEecccCcccccchh-h
Q 019416          204 TLELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEG---------GLPNTSLTSLLISECENLMSLPH-Q  272 (341)
Q Consensus       204 ~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~---------~~~~~~L~~L~l~~~~~l~~l~~-~  272 (341)
                      +++|+.|+++++. +..+ +..+..+++|+.|+++++. +..++..         ...+++|++|+++++ .++.+|. .
T Consensus       479 l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~  555 (680)
T 1ziw_A          479 LRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEV  555 (680)
T ss_dssp             CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTT
T ss_pred             CCCCCEEECCCCC-CCcCChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHH
Confidence            3345556665543 2333 2345555666666666542 3322211         112346666666664 4556654 3


Q ss_pred             hccCCCcCeEeecCCCCCccCCCCCC--CCCccEEEeecCCCCCcccccccc-CCCceeEEEEeC
Q 019416          273 IHKATSLQDLSVSGCPSLMSFPHGGL--PPNLISLGIIDCENLIPLSQWELH-KLKHLNKYTILG  334 (341)
Q Consensus       273 l~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~~~~~~~~~i~-~~~~L~~l~l~~  334 (341)
                      +..+++|+.|++++ +.++.++...+  .++|++|+++++ .++..+...+. .+++|+.+++++
T Consensus       556 ~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~  618 (680)
T 1ziw_A          556 FKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRF  618 (680)
T ss_dssp             TTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTT
T ss_pred             cccccCcceeECCC-CCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccC
Confidence            56666677777755 35666655432  466777777665 33322211233 456777777766

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.74  E-value=2.6e-16  Score=150.59  Aligned_cols=119  Identities=18%  Similarity=0.145  Sum_probs=89.7

Q ss_pred             CCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCCCCccE
Q 019416           40 ETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKR  114 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~  114 (341)
                      ++|++|++++|. ++.+ +..+.++++|++|++++| .+..+    +..  +++|++|+++++ .+..+|.. .+++|++
T Consensus        21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~~L~~L~Ls~N-~l~~lp~~-~l~~L~~   94 (520)
T 2z7x_B           21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHN-RIQYLDISVFKF--NQELEYLDLSHN-KLVKISCH-PTVNLKH   94 (520)
T ss_dssp             TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSS-CCCEEEGGGGTT--CTTCCEEECCSS-CCCEEECC-CCCCCSE
T ss_pred             ccccEEECCCCc-ccccChhhccccccccEEecCCC-ccCCcChHHhhc--ccCCCEEecCCC-ceeecCcc-ccCCccE
Confidence            899999999875 5555 456888999999999995 55444    888  999999999986 67788776 7899999


Q ss_pred             EEEeCCCChH-HHHHHhhhhcc--cccceEeecCCCCccccCCCCCcccc--ceEEeeccC
Q 019416          115 LKICDCTNAE-LILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATL--RHLRIVNCM  170 (341)
Q Consensus       115 L~l~~~~~~~-~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L--~~L~l~~~~  170 (341)
                      |++++|.... .    +|..++  ++|++|+++++ .++... ...+++|  +.|+++++.
T Consensus        95 L~L~~N~l~~~~----~p~~~~~l~~L~~L~L~~n-~l~~~~-~~~l~~L~L~~L~l~~n~  149 (520)
T 2z7x_B           95 LDLSFNAFDALP----ICKEFGNMSQLKFLGLSTT-HLEKSS-VLPIAHLNISKVLLVLGE  149 (520)
T ss_dssp             EECCSSCCSSCC----CCGGGGGCTTCCEEEEEES-SCCGGG-GGGGTTSCEEEEEEEECT
T ss_pred             EeccCCcccccc----chhhhccCCcceEEEecCc-ccchhh-ccccccceeeEEEeeccc
Confidence            9999997433 2    455555  99999999885 444321 1334455  777777653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.73  E-value=6.6e-16  Score=150.26  Aligned_cols=248  Identities=28%  Similarity=0.320  Sum_probs=143.3

Q ss_pred             cCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhhhcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCC
Q 019416           42 LESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCT  121 (341)
Q Consensus        42 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~  121 (341)
                      +++|+++++ .++.+|..+.  ++|++|++++| .+..+-..  +++|++|++++| .+..+|.  .+++|++|++++|.
T Consensus        42 l~~L~ls~n-~L~~lp~~l~--~~L~~L~L~~N-~l~~lp~~--l~~L~~L~Ls~N-~l~~lp~--~l~~L~~L~Ls~N~  112 (622)
T 3g06_A           42 NAVLNVGES-GLTTLPDCLP--AHITTLVIPDN-NLTSLPAL--PPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSNP  112 (622)
T ss_dssp             CCEEECCSS-CCSCCCSCCC--TTCSEEEECSC-CCSCCCCC--CTTCCEEEECSC-CCSCCCC--CCTTCCEEEECSCC
T ss_pred             CcEEEecCC-CcCccChhhC--CCCcEEEecCC-CCCCCCCc--CCCCCEEEcCCC-cCCcCCC--CCCCCCEEECcCCc
Confidence            455555543 3344444332  45555555552 33333223  455555555543 3444443  34555555555543


Q ss_pred             ChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc------ceeeeCCCCCCcCCCccc
Q 019416          122 NAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE------SSKIRNCDSVVGPEGESS  195 (341)
Q Consensus       122 ~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~------~l~l~~~~~l~~~~~~~~  195 (341)
                       +..    +|... ++|+.|++++ +.++.+|.  .+++|++|+++++ .+..+|.      .+.++++.          
T Consensus       113 -l~~----l~~~l-~~L~~L~L~~-N~l~~lp~--~l~~L~~L~Ls~N-~l~~l~~~~~~L~~L~L~~N~----------  172 (622)
T 3g06_A          113 -LTH----LPALP-SGLCKLWIFG-NQLTSLPV--LPPGLQELSVSDN-QLASLPALPSELCKLWAYNNQ----------  172 (622)
T ss_dssp             -CCC----CCCCC-TTCCEEECCS-SCCSCCCC--CCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSC----------
T ss_pred             -CCC----CCCCC-CCcCEEECCC-CCCCcCCC--CCCCCCEEECcCC-cCCCcCCccCCCCEEECCCCC----------
Confidence             222    33322 4555555544 23444442  2245555555543 2332221      11111111          


Q ss_pred             ccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhcc
Q 019416          196 LENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHK  275 (341)
Q Consensus       196 ~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~  275 (341)
                      +..+| ..+++|+.|+++++ .+..+|..   +++|+.|++++| .+..++..   +++|++|+++++ .++.+|   ..
T Consensus       173 l~~l~-~~~~~L~~L~Ls~N-~l~~l~~~---~~~L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~N-~L~~lp---~~  239 (622)
T 3g06_A          173 LTSLP-MLPSGLQELSVSDN-QLASLPTL---PSELYKLWAYNN-RLTSLPAL---PSGLKELIVSGN-RLTSLP---VL  239 (622)
T ss_dssp             CSCCC-CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSSCCCC---CTTCCEEECCSS-CCSCCC---CC
T ss_pred             CCCCc-ccCCCCcEEECCCC-CCCCCCCc---cchhhEEECcCC-cccccCCC---CCCCCEEEccCC-ccCcCC---CC
Confidence            11122 23346999999885 45666644   378899999886 45556542   268999999986 688887   56


Q ss_pred             CCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCCccccccccCCCceeEEEEeCCCC
Q 019416          276 ATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLP  337 (341)
Q Consensus       276 l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C~  337 (341)
                      +++|+.|+++++ .++.++.  .+++|+.|++++| .++..+.+ +.++++|+.|++++ ++
T Consensus       240 l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N-~L~~lp~~-l~~l~~L~~L~L~~-N~  295 (622)
T 3g06_A          240 PSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRN-QLTRLPES-LIHLSSETTVNLEG-NP  295 (622)
T ss_dssp             CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS-CCCSCCGG-GGGSCTTCEEECCS-CC
T ss_pred             CCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCC-CCCcCCHH-HhhccccCEEEecC-CC
Confidence            689999999885 7888877  7789999999987 44455553 78899999999998 54

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.72  E-value=1.3e-15  Score=154.22  Aligned_cols=283  Identities=12%  Similarity=0.051  Sum_probs=184.4

Q ss_pred             ccCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchh-h-----hcccCCCCcceEeeecCCCCcccc--
Q 019416           33 ILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEV-L-----LHRMAYTSLEYLEFSSCLFFSNSK--  104 (341)
Q Consensus        33 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~-~-----~~~~~l~~L~~L~l~~~~~l~~~~--  104 (341)
                      ...++.+++|++|++++|......|..+.++++|++|++++| .+.+ .     +..  +++|++|++++| .+..++  
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~--L~~L~~L~Ls~N-~l~~~~~~  141 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRN--LKALTRLDLSKN-QIRSLYLH  141 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSS--CSSCCEEEEESC-CCCCCCCC
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCC-CCCcccccCccccc--cCCCCEEECCCC-cccccccc
Confidence            356889999999999987544444778899999999999996 4433 2     778  999999999986 444442  


Q ss_pred             -CCCCCCCccEEEEeCCCChHHHHHHhhhhcc----cccceEeecCCCCccccCCC-CCcc------ccceEEeeccCCc
Q 019416          105 -QDYFPTTLKRLKICDCTNAELILKVLMDQKG----LALESLEVDGCSSLFSLPIN-QLPA------TLRHLRIVNCMNL  172 (341)
Q Consensus       105 -~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~l~~l~~~-~~~~------~L~~L~l~~~~~l  172 (341)
                       ..+.+++|++|++++|.....    .+..+.    ++|+.|+++++......+.. ..++      +|+.|+++++.--
T Consensus       142 ~~~~~L~~L~~L~Ls~N~i~~~----~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~  217 (844)
T 3j0a_A          142 PSFGKLNSLKSIDFSSNQIFLV----CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWT  217 (844)
T ss_dssp             GGGGTCSSCCEEEEESSCCCCC----CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSS
T ss_pred             hhHhhCCCCCEEECCCCcCCee----CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCc
Confidence             245689999999999864332    333332    68888888875433333221 1122      3788888765211


Q ss_pred             cccCc------------ceeee----------------------C--CCCCCc-CCCccccccccc---ccccccceEee
Q 019416          173 KSLGE------------SSKIR----------------------N--CDSVVG-PEGESSLENMTS---SHTLELRELEI  212 (341)
Q Consensus       173 ~~~~~------------~l~l~----------------------~--~~~l~~-~~~~~~~~~l~~---~~~~~L~~L~l  212 (341)
                      ...+.            .+.+.                      +  +..++. ......+..++.   ..+++|+.|++
T Consensus       218 ~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  297 (844)
T 3j0a_A          218 VDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNL  297 (844)
T ss_dssp             TTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEE
T ss_pred             hhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEEC
Confidence            11100            11111                      0  011111 000000111111   14568999999


Q ss_pred             ccCcCCCcccccCCCCCCcCeEEeecCCCCcee-cCCCCCCCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCC
Q 019416          213 WDCLELEFLPEDMHNFTDLNLLSISNCPSLESF-PEGGLPNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSL  290 (341)
Q Consensus       213 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l  290 (341)
                      +++......+..+..+++|+.|++++|. +..+ +.....+++|++|+++++ .++.++. .+..+++|+.|+++++ .+
T Consensus       298 ~~n~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l  374 (844)
T 3j0a_A          298 AYNKINKIADEAFYGLDNLQVLNLSYNL-LGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN-AL  374 (844)
T ss_dssp             ESCCCCEECTTTTTTCSSCCEEEEESCC-CSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC-CS
T ss_pred             CCCcCCCCChHHhcCCCCCCEEECCCCC-CCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC-CC
Confidence            9975444456788999999999999975 4444 333344679999999996 5777764 5788999999999985 56


Q ss_pred             ccCCCCCCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          291 MSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       291 ~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      +.++.   .++|+.|+++++... ..+..    ..+++.+++++
T Consensus       375 ~~i~~---~~~L~~L~l~~N~l~-~l~~~----~~~l~~L~ls~  410 (844)
T 3j0a_A          375 TTIHF---IPSIPDIFLSGNKLV-TLPKI----NLTANLIHLSE  410 (844)
T ss_dssp             CCCSS---CCSCSEEEEESCCCC-CCCCC----CTTCCEEECCS
T ss_pred             CcccC---CCCcchhccCCCCcc-ccccc----ccccceeeccc
Confidence            65543   789999999987543 33322    46788888876

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.72  E-value=8.1e-16  Score=144.79  Aligned_cols=254  Identities=23%  Similarity=0.225  Sum_probs=132.7

Q ss_pred             CCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhhhcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeC
Q 019416           40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICD  119 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~  119 (341)
                      ++|++|++++| .++.+| ++..+++|++|++++| .+..+-..  ..+|++|++++| .+..++....+++|++|++++
T Consensus       131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N-~l~~lp~~--~~~L~~L~L~~n-~l~~l~~~~~l~~L~~L~l~~  204 (454)
T 1jl5_A          131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNN-SLKKLPDL--PPSLEFIAAGNN-QLEELPELQNLPFLTAIYADN  204 (454)
T ss_dssp             TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSSCCCCTTCTTCCEEECCS
T ss_pred             CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCC-cCcccCCC--cccccEEECcCC-cCCcCccccCCCCCCEEECCC
Confidence            45666666654 334455 3555666666666663 34333333  446666666654 444455444566666666666


Q ss_pred             CCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc------ceeeeCCCCCCcCCCc
Q 019416          120 CTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE------SSKIRNCDSVVGPEGE  193 (341)
Q Consensus       120 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~------~l~l~~~~~l~~~~~~  193 (341)
                      |. +..    +|... ++|++|+++++ .++.+|....+++|+.|+++++ .++.+|.      .++++++.        
T Consensus       205 N~-l~~----l~~~~-~~L~~L~l~~n-~l~~lp~~~~l~~L~~L~l~~N-~l~~l~~~~~~L~~L~l~~N~--------  268 (454)
T 1jl5_A          205 NS-LKK----LPDLP-LSLESIVAGNN-ILEELPELQNLPFLTTIYADNN-LLKTLPDLPPSLEALNVRDNY--------  268 (454)
T ss_dssp             SC-CSS----CCCCC-TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS-CCSSCCSCCTTCCEEECCSSC--------
T ss_pred             Cc-CCc----CCCCc-CcccEEECcCC-cCCcccccCCCCCCCEEECCCC-cCCcccccccccCEEECCCCc--------
Confidence            64 222    33333 56666666664 4455554445566677766654 2333332      22222221        


Q ss_pred             ccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhh
Q 019416          194 SSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQI  273 (341)
Q Consensus       194 ~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l  273 (341)
                        +..+|. .+++|+.|+++++. +..++..   .++|+.|+++++ .+..++.  .+ ++|++|+++++ .++.+|.. 
T Consensus       269 --l~~l~~-~~~~L~~L~ls~N~-l~~l~~~---~~~L~~L~l~~N-~l~~i~~--~~-~~L~~L~Ls~N-~l~~lp~~-  335 (454)
T 1jl5_A          269 --LTDLPE-LPQSLTFLDVSENI-FSGLSEL---PPNLYYLNASSN-EIRSLCD--LP-PSLEELNVSNN-KLIELPAL-  335 (454)
T ss_dssp             --CSCCCC-CCTTCCEEECCSSC-CSEESCC---CTTCCEEECCSS-CCSEECC--CC-TTCCEEECCSS-CCSCCCCC-
T ss_pred             --ccccCc-ccCcCCEEECcCCc-cCcccCc---CCcCCEEECcCC-cCCcccC--Cc-CcCCEEECCCC-cccccccc-
Confidence              111111 12346666666642 3333221   146666666664 2343332  11 47888888874 46666643 


Q ss_pred             ccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCC--ccccccccCC-------------CceeEEEEeC
Q 019416          274 HKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLI--PLSQWELHKL-------------KHLNKYTILG  334 (341)
Q Consensus       274 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~--~~~~~~i~~~-------------~~L~~l~l~~  334 (341)
                        +++|+.|++++| .++.++.  .+++|++|+++++....  ..+.+ +..+             ++|++|++++
T Consensus       336 --~~~L~~L~L~~N-~l~~lp~--~l~~L~~L~L~~N~l~~l~~ip~~-l~~L~~n~~~~~i~~~~~~L~~L~ls~  405 (454)
T 1jl5_A          336 --PPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNPLREFPDIPES-VEDLRMNSHLAEVPELPQNLKQLHVET  405 (454)
T ss_dssp             --CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSCCSSCCCCCTT-CCEEECCC-------------------
T ss_pred             --CCcCCEEECCCC-ccccccc--hhhhccEEECCCCCCCcCCCChHH-HHhhhhcccccccccccCcCCEEECCC
Confidence              578888888775 5677776  57788888888875444  34443 4555             6788888887

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.71  E-value=2.6e-16  Score=151.59  Aligned_cols=123  Identities=15%  Similarity=0.122  Sum_probs=93.7

Q ss_pred             CCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCC
Q 019416           39 GETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTT  111 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~  111 (341)
                      .++|++|++++|. ++.+ |..+..+++|++|++++| .+..+    +..  +++|++|++++| .+..++.  .+.+++
T Consensus        25 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~   99 (549)
T 2z81_A           25 TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSS-RINTIEGDAFYS--LGSLEHLDLSDN-HLSSLSSSWFGPLSS   99 (549)
T ss_dssp             CTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTS-CCCEECTTTTTT--CTTCCEEECTTS-CCCSCCHHHHTTCTT
T ss_pred             CCCccEEECcCCc-cCccChhhhhcCCcccEEECCCC-CcCccChhhccc--cccCCEEECCCC-ccCccCHHHhccCCC
Confidence            3789999999875 5555 566888999999999995 55544    778  999999999986 5555543  456899


Q ss_pred             ccEEEEeCCCChH-HHHHHhhhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccC
Q 019416          112 LKRLKICDCTNAE-LILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCM  170 (341)
Q Consensus       112 L~~L~l~~~~~~~-~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~  170 (341)
                      |++|++++|.... .    .|..++  ++|++|+++++..++.++..  ..+++|+.|+++++.
T Consensus       100 L~~L~Ls~n~l~~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~  159 (549)
T 2z81_A          100 LKYLNLMGNPYQTLG----VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS  159 (549)
T ss_dssp             CCEEECTTCCCSSSC----SSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT
T ss_pred             CcEEECCCCcccccc----hhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc
Confidence            9999999986332 2    333444  89999999997667777643  556788899888754

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.71  E-value=1.4e-15  Score=137.19  Aligned_cols=257  Identities=13%  Similarity=0.134  Sum_probs=183.5

Q ss_pred             CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccc-cC-CCCCCC
Q 019416           38 TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNS-KQ-DYFPTT  111 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~-~~-~~~~~~  111 (341)
                      ...++++++++++ .++.+|..+.  ++|+.|+++++ .+..+    +..  +++|++|++++| .+..+ +. ...+++
T Consensus        29 c~c~l~~l~~~~~-~l~~lp~~~~--~~l~~L~L~~n-~i~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~  101 (330)
T 1xku_A           29 CQCHLRVVQCSDL-GLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKN--LKNLHTLILINN-KISKISPGAFAPLVK  101 (330)
T ss_dssp             CEEETTEEECTTS-CCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTT--CTTCCEEECCSS-CCCCBCTTTTTTCTT
T ss_pred             CcCCCeEEEecCC-CccccCccCC--CCCeEEECCCC-cCCEeChhhhcc--CCCCCEEECCCC-cCCeeCHHHhcCCCC
Confidence            3447999999975 5667776443  79999999995 55554    778  999999999986 55555 32 445899


Q ss_pred             ccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCCc
Q 019416          112 LKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG  189 (341)
Q Consensus       112 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~  189 (341)
                      |++|++++|. +..    +|..+.++|++|+++++ .++.++..  ..+++|+.|+++++. +...+.            
T Consensus       102 L~~L~Ls~n~-l~~----l~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~------------  162 (330)
T 1xku_A          102 LERLYLSKNQ-LKE----LPEKMPKTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNP-LKSSGI------------  162 (330)
T ss_dssp             CCEEECCSSC-CSB----CCSSCCTTCCEEECCSS-CCCBBCHHHHTTCTTCCEEECCSSC-CCGGGB------------
T ss_pred             CCEEECCCCc-CCc----cChhhcccccEEECCCC-cccccCHhHhcCCccccEEECCCCc-CCccCc------------
Confidence            9999999986 445    77666689999999884 66666543  556899999998753 221100            


Q ss_pred             CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCccccc
Q 019416          190 PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLMS  268 (341)
Q Consensus       190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~  268 (341)
                        ...+   +  ..+++|+.|+++++ .+..+|..+.  ++|+.|+++++. ++.++. ....+++|++|+++++ .++.
T Consensus       163 --~~~~---~--~~l~~L~~L~l~~n-~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n-~l~~  230 (330)
T 1xku_A          163 --ENGA---F--QGMKKLSYIRIADT-NITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN-SISA  230 (330)
T ss_dssp             --CTTG---G--GGCTTCCEEECCSS-CCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSS-CCCE
T ss_pred             --Chhh---c--cCCCCcCEEECCCC-ccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCC-cCce
Confidence              0001   1  13457999999986 4566776553  799999999975 555543 2334579999999996 5776


Q ss_pred             chh-hhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCCccccccc------cCCCceeEEEEeC
Q 019416          269 LPH-QIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWEL------HKLKHLNKYTILG  334 (341)
Q Consensus       269 l~~-~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i------~~~~~L~~l~l~~  334 (341)
                      ++. .+..+++|++|++++| .+..++.. ...++|++|+++++..-. .+...+      .....++.+++.+
T Consensus       231 ~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~i~~-~~~~~f~~~~~~~~~~~l~~l~l~~  302 (330)
T 1xku_A          231 VDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNNISA-IGSNDFCPPGYNTKKASYSGVSLFS  302 (330)
T ss_dssp             ECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSCCCC-CCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             eChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCcCCc-cChhhcCCcccccccccccceEeec
Confidence            654 7889999999999985 67788765 446899999999985433 111112      2347888999988

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.71  E-value=5e-16  Score=146.22  Aligned_cols=213  Identities=19%  Similarity=0.206  Sum_probs=143.7

Q ss_pred             CCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCCc
Q 019416           40 ETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTTL  112 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L  112 (341)
                      +++++|+++++. ++.+ +..+..+++|++|+++++ .+..+    +..  +++|++|++++| .+..++.  ...+++|
T Consensus        75 ~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L  149 (452)
T 3zyi_A           75 SNTRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNG--LASLNTLELFDN-WLTVIPSGAFEYLSKL  149 (452)
T ss_dssp             TTCSEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT--CTTCCEEECCSS-CCSBCCTTTSSSCTTC
T ss_pred             CCccEEECcCCc-CceECHHHcCCCCCCCEEECCCC-ccCCcChhhccC--cccCCEEECCCC-cCCccChhhhcccCCC
Confidence            578888888764 4444 556777888888888884 45444    677  888888888875 5666654  3347888


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCC
Q 019416          113 KRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSV  187 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l  187 (341)
                      ++|++++|. +..    ++....   ++|++|++++|+.++.++..  ..+++|+.|+++++ .+..+|.          
T Consensus       150 ~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~----------  213 (452)
T 3zyi_A          150 RELWLRNNP-IES----IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN----------  213 (452)
T ss_dssp             CEEECCSCC-CCE----ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSCCC----------
T ss_pred             CEEECCCCC-cce----eCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccccc----------
Confidence            888888876 333    443222   88888888887788777754  45678888888775 3443332          


Q ss_pred             CcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCccc
Q 019416          188 VGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENL  266 (341)
Q Consensus       188 ~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l  266 (341)
                                 +.  .+++|+.|+++++......|..+..+++|+.|+++++. +..++.. ...+++|++|+++++ .+
T Consensus       214 -----------~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l  278 (452)
T 3zyi_A          214 -----------LT--PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAFDGLASLVELNLAHN-NL  278 (452)
T ss_dssp             -----------CT--TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSS-CC
T ss_pred             -----------cc--ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHhcCCCCCCEEECCCC-cC
Confidence                       11  33358888888865444446777788888888888754 4444432 233468888888875 57


Q ss_pred             ccchh-hhccCCCcCeEeecCCC
Q 019416          267 MSLPH-QIHKATSLQDLSVSGCP  288 (341)
Q Consensus       267 ~~l~~-~l~~l~~L~~L~l~~c~  288 (341)
                      +.++. .+..+++|+.|++++++
T Consensus       279 ~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          279 SSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             SCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CccChHHhccccCCCEEEccCCC
Confidence            77664 45677888888887653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.70  E-value=7e-18  Score=151.51  Aligned_cols=125  Identities=11%  Similarity=0.045  Sum_probs=81.2

Q ss_pred             ccccceEeeccCcCCCcccccC-CCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeE
Q 019416          204 TLELRELEIWDCLELEFLPEDM-HNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDL  282 (341)
Q Consensus       204 ~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L  282 (341)
                      +++|+.|+++++......+..+ ..+++|++|++++|. ++.++.... +++|++|+++++ .++.+|..+..+++|+.|
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~-l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L  219 (317)
T 3o53_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVV-FAKLKTLDLSSN-KLAFMGPEFQSAAGVTWI  219 (317)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCCC-CTTCCEEECCSS-CCCEECGGGGGGTTCSEE
T ss_pred             cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccccccccc-cccCCEEECCCC-cCCcchhhhcccCcccEE
Confidence            3357777777754322233444 356788888888754 555544332 468888888875 577777777788888888


Q ss_pred             eecCCCCCccCCCC-CCCCCccEEEeecCCCC-CccccccccCCCceeEEEEe
Q 019416          283 SVSGCPSLMSFPHG-GLPPNLISLGIIDCENL-IPLSQWELHKLKHLNKYTIL  333 (341)
Q Consensus       283 ~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~-~~~~~~~i~~~~~L~~l~l~  333 (341)
                      +++++ .++.++.. ...++|+.|++++++.. ...+.| +..+++|+.+++.
T Consensus       220 ~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~-~~~~~~L~~l~l~  270 (317)
T 3o53_A          220 SLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQ  270 (317)
T ss_dssp             ECTTS-CCCEECTTCCCCTTCCEEECTTCCCBHHHHHHH-HHTCHHHHHHHHH
T ss_pred             ECcCC-cccchhhHhhcCCCCCEEEccCCCccCcCHHHH-HhccccceEEECC
Confidence            88774 66677654 34678888888887655 233443 5666666666555

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.70  E-value=7.3e-16  Score=144.59  Aligned_cols=214  Identities=16%  Similarity=0.227  Sum_probs=144.1

Q ss_pred             CCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCC
Q 019416           39 GETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTT  111 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~  111 (341)
                      .+++++|+++++ .++.+ +..+..+++|++|++++| .+..+    +..  +++|++|++++| .+..++.  ...+++
T Consensus        63 ~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~  137 (440)
T 3zyj_A           63 STNTRLLNLHEN-QIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNG--LANLNTLELFDN-RLTTIPNGAFVYLSK  137 (440)
T ss_dssp             CTTCSEEECCSC-CCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTT--CSSCCEEECCSS-CCSSCCTTTSCSCSS
T ss_pred             CCCCcEEEccCC-cCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccC--CccCCEEECCCC-cCCeeCHhHhhcccc
Confidence            366888888876 44554 355777888888888884 45443    777  888888888875 6666654  344788


Q ss_pred             ccEEEEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCC
Q 019416          112 LKRLKICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDS  186 (341)
Q Consensus       112 L~~L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~  186 (341)
                      |++|++++|. +..    ++.. +.  ++|++|++.+++.+..++..  ..+++|+.|+++++ .++.+|.         
T Consensus       138 L~~L~L~~N~-i~~----~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~---------  202 (440)
T 3zyj_A          138 LKELWLRNNP-IES----IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN---------  202 (440)
T ss_dssp             CCEEECCSCC-CCE----ECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSSCCC---------
T ss_pred             CceeeCCCCc-ccc----cCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCccccc---------
Confidence            8888888876 333    4432 22  88888888887777777654  45678888888775 3444432         


Q ss_pred             CCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcc
Q 019416          187 VVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECEN  265 (341)
Q Consensus       187 l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~  265 (341)
                                  +.  .+++|+.|+++++.-....|..+..+++|+.|+++++ .+..++... ..+++|++|+++++ .
T Consensus       203 ------------~~--~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~  266 (440)
T 3zyj_A          203 ------------LT--PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHN-N  266 (440)
T ss_dssp             ------------CT--TCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTS-C
T ss_pred             ------------cC--CCcccCEEECCCCccCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCC-C
Confidence                        11  3335888888886433333667777888888888875 355554432 23468888888875 5


Q ss_pred             cccchh-hhccCCCcCeEeecCCC
Q 019416          266 LMSLPH-QIHKATSLQDLSVSGCP  288 (341)
Q Consensus       266 l~~l~~-~l~~l~~L~~L~l~~c~  288 (341)
                      ++.++. .+..+++|+.|++++++
T Consensus       267 l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          267 LTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             CCccChhHhccccCCCEEEcCCCC
Confidence            777664 45777888888887643

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.70  E-value=1.7e-15  Score=146.45  Aligned_cols=120  Identities=15%  Similarity=0.126  Sum_probs=89.9

Q ss_pred             CCCcCeEEcCCCCCCcccc-ccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416           39 GETLESLEIDNLSSLASFL-RSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK  113 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~  113 (341)
                      .++|++|++++|. ++.++ ..+..+++|++|++++| .+..+    +..  +++|++|++++| .+..+|.. .+++|+
T Consensus        51 ~~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~--l~~L~~L~Ls~N-~l~~lp~~-~l~~L~  124 (562)
T 3a79_B           51 PPRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHN-RIRSLDFHVFLF--NQDLEYLDVSHN-RLQNISCC-PMASLR  124 (562)
T ss_dssp             CTTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSC-CCCEECTTTTTT--CTTCCEEECTTS-CCCEECSC-CCTTCS
T ss_pred             CCCcCEEECCCCC-ccccChhhhccCCCccEEECCCC-CCCcCCHHHhCC--CCCCCEEECCCC-cCCccCcc-ccccCC
Confidence            3789999999874 55554 56888999999999995 55554    778  999999999986 67788876 789999


Q ss_pred             EEEEeCCCChH-HHHHHhhhhcc--cccceEeecCCCCccccCCCCCcccc--ceEEeeccC
Q 019416          114 RLKICDCTNAE-LILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATL--RHLRIVNCM  170 (341)
Q Consensus       114 ~L~l~~~~~~~-~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L--~~L~l~~~~  170 (341)
                      +|++++|.... .    +|..++  ++|++|++++ +.++.... ..+++|  +.|+++++.
T Consensus       125 ~L~Ls~N~l~~l~----~p~~~~~l~~L~~L~L~~-n~l~~~~~-~~l~~L~L~~L~L~~n~  180 (562)
T 3a79_B          125 HLDLSFNDFDVLP----VCKEFGNLTKLTFLGLSA-AKFRQLDL-LPVAHLHLSCILLDLVS  180 (562)
T ss_dssp             EEECCSSCCSBCC----CCGGGGGCTTCCEEEEEC-SBCCTTTT-GGGTTSCEEEEEEEESS
T ss_pred             EEECCCCCccccC----chHhhcccCcccEEecCC-CccccCch-hhhhhceeeEEEeeccc
Confidence            99999987433 1    234454  9999999988 45554322 233455  888888764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.70  E-value=1.8e-15  Score=147.83  Aligned_cols=123  Identities=15%  Similarity=0.104  Sum_probs=86.4

Q ss_pred             CCCchhhhhhcccCCC--ccc-cCCCCCCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCC
Q 019416           15 APVPKNFLALALFPDE--DKI-LGIRTGETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAY   86 (341)
Q Consensus        15 ~~~~~~~~~l~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l   86 (341)
                      ..+|.+...|++-.+.  .+. ..|..+++|++|+|++| .++.+++ ++.++++|++|++++| ++..+    ++.  +
T Consensus        48 ~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N-~i~~i~~~~f~~L~~L~~L~Ls~N-~l~~l~~~~f~~--L  123 (635)
T 4g8a_A           48 DNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGN-PIQSLALGAFSG--L  123 (635)
T ss_dssp             SSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTC-CCCEECGGGGTT--C
T ss_pred             CCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCC-cCCCcChhHhcCCCCCCEEEccCC-cCCCCCHHHhcC--C
Confidence            3456667777775542  122 35788999999999986 5666654 5778999999999984 56554    778  8


Q ss_pred             CCcceEeeecCCCCccccC--CCCCCCccEEEEeCCCChH-HHHHHhhhhcc--cccceEeecCC
Q 019416           87 TSLEYLEFSSCLFFSNSKQ--DYFPTTLKRLKICDCTNAE-LILKVLMDQKG--LALESLEVDGC  146 (341)
Q Consensus        87 ~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~--~~L~~L~l~~~  146 (341)
                      ++|++|++++| .+..++.  .+.+++|++|++++|.... .    .|..++  ++|++|+++++
T Consensus       124 ~~L~~L~Ls~N-~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~----~~~~~~~l~~L~~L~L~~N  183 (635)
T 4g8a_A          124 SSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFK----LPEYFSNLTNLEHLDLSSN  183 (635)
T ss_dssp             TTCCEEECTTS-CCCCSTTCCCTTCTTCCEEECCSSCCCCCC----CCGGGGGCTTCCEEECCSS
T ss_pred             CCCCEEECCCC-cCCCCChhhhhcCcccCeeccccCccccCC----CchhhccchhhhhhcccCc
Confidence            99999999886 6666664  3447889999998876322 1    334433  78888888763

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.69  E-value=1.6e-16  Score=149.53  Aligned_cols=242  Identities=22%  Similarity=0.187  Sum_probs=106.1

Q ss_pred             cccCCCCCCCcCeEEcCCCCCCccccccccCCCCc-------------cEEeccCCCCchhhhcccCCCCcceEeeecCC
Q 019416           32 KILGIRTGETLESLEIDNLSSLASFLRSELAATTV-------------KQLKINKCPDLEVLLHRMAYTSLEYLEFSSCL   98 (341)
Q Consensus        32 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~   98 (341)
                      ++..++.+++|++|++++|.....+|.+++.+++|             ++|++++| .+..+-..  .++|++|+++++ 
T Consensus        26 iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~-~l~~lp~~--~~~L~~L~l~~n-  101 (454)
T 1jl5_A           26 MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNL-GLSSLPEL--PPHLESLVASCN-  101 (454)
T ss_dssp             --------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTS-CCSCCCSC--CTTCSEEECCSS-
T ss_pred             CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCC-ccccCCCC--cCCCCEEEccCC-
Confidence            33445566666666666554333455555555443             55555553 23333223  455666666553 


Q ss_pred             CCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc-
Q 019416           99 FFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE-  177 (341)
Q Consensus        99 ~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~-  177 (341)
                      .+..+|.  .+++|++|++++|. +..    ++... ++|++|+++++ .++.+|....+++|++|+++++ .++.+|. 
T Consensus       102 ~l~~lp~--~~~~L~~L~l~~n~-l~~----l~~~~-~~L~~L~L~~n-~l~~lp~~~~l~~L~~L~l~~N-~l~~lp~~  171 (454)
T 1jl5_A          102 SLTELPE--LPQSLKSLLVDNNN-LKA----LSDLP-PLLEYLGVSNN-QLEKLPELQNSSFLKIIDVDNN-SLKKLPDL  171 (454)
T ss_dssp             CCSSCCC--CCTTCCEEECCSSC-CSC----CCSCC-TTCCEEECCSS-CCSSCCCCTTCTTCCEEECCSS-CCSCCCCC
T ss_pred             cCCcccc--ccCCCcEEECCCCc-cCc----ccCCC-CCCCEEECcCC-CCCCCcccCCCCCCCEEECCCC-cCcccCCC
Confidence            4444442  23556666666653 222    32221 45666666553 4444553344556666666554 2333332 


Q ss_pred             -----ceeeeCCCCCCc-CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCC
Q 019416          178 -----SSKIRNCDSVVG-PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLP  251 (341)
Q Consensus       178 -----~l~l~~~~~l~~-~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~  251 (341)
                           +++++++. ++. +    +   +  ..+++|+.|+++++. +..+|...   ++|++|++++| .+..+|. ...
T Consensus       172 ~~~L~~L~L~~n~-l~~l~----~---~--~~l~~L~~L~l~~N~-l~~l~~~~---~~L~~L~l~~n-~l~~lp~-~~~  235 (454)
T 1jl5_A          172 PPSLEFIAAGNNQ-LEELP----E---L--QNLPFLTAIYADNNS-LKKLPDLP---LSLESIVAGNN-ILEELPE-LQN  235 (454)
T ss_dssp             CTTCCEEECCSSC-CSSCC----C---C--TTCTTCCEEECCSSC-CSSCCCCC---TTCCEEECCSS-CCSSCCC-CTT
T ss_pred             cccccEEECcCCc-CCcCc----c---c--cCCCCCCEEECCCCc-CCcCCCCc---CcccEEECcCC-cCCcccc-cCC
Confidence                 11111111 000 0    0   0  022245555555532 23333222   35555555554 2333432 222


Q ss_pred             CCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecC
Q 019416          252 NTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDC  310 (341)
Q Consensus       252 ~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c  310 (341)
                      +++|++|+++++ .++.+|.   .+++|+.|++++| .+..++.  .+++|++|++++|
T Consensus       236 l~~L~~L~l~~N-~l~~l~~---~~~~L~~L~l~~N-~l~~l~~--~~~~L~~L~ls~N  287 (454)
T 1jl5_A          236 LPFLTTIYADNN-LLKTLPD---LPPSLEALNVRDN-YLTDLPE--LPQSLTFLDVSEN  287 (454)
T ss_dssp             CTTCCEEECCSS-CCSSCCS---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS
T ss_pred             CCCCCEEECCCC-cCCcccc---cccccCEEECCCC-cccccCc--ccCcCCEEECcCC
Confidence            345555555553 3444442   2245555555553 3444433  3455666666554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.69  E-value=1.5e-15  Score=137.16  Aligned_cols=259  Identities=13%  Similarity=0.116  Sum_probs=174.8

Q ss_pred             CchhhhhhcccCCC--cc-ccCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh-hcccCCCCcce
Q 019416           17 VPKNFLALALFPDE--DK-ILGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEY   91 (341)
Q Consensus        17 ~~~~~~~l~~~~~~--~~-~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~   91 (341)
                      +++.+..+.+..+.  .. ...+..+++|++|++++|. ++.+ |..+..+++|++|++++ +.+..+ ...  .++|++
T Consensus        52 ~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~--~~~L~~  127 (332)
T 2ft3_A           52 ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISK-NHLVEIPPNL--PSSLVE  127 (332)
T ss_dssp             CCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCS-SCCCSCCSSC--CTTCCE
T ss_pred             CCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCC-CcCCccCccc--cccCCE
Confidence            34556666664442  12 2357889999999999874 5555 66788899999999998 456665 445  689999


Q ss_pred             EeeecCCCCccccC--CCCCCCccEEEEeCCCChH--HHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEe
Q 019416           92 LEFSSCLFFSNSKQ--DYFPTTLKRLKICDCTNAE--LILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRI  166 (341)
Q Consensus        92 L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l  166 (341)
                      |+++++ .+..++.  ...+++|++|+++++....  .    .+..+. .+|++|++++ +.++.+|.. .+++|+.|++
T Consensus       128 L~l~~n-~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~~~l~L~~L~l~~-n~l~~l~~~-~~~~L~~L~l  200 (332)
T 2ft3_A          128 LRIHDN-RIRKVPKGVFSGLRNMNCIEMGGNPLENSGF----EPGAFDGLKLNYLRISE-AKLTGIPKD-LPETLNELHL  200 (332)
T ss_dssp             EECCSS-CCCCCCSGGGSSCSSCCEEECCSCCCBGGGS----CTTSSCSCCCSCCBCCS-SBCSSCCSS-SCSSCSCCBC
T ss_pred             EECCCC-ccCccCHhHhCCCccCCEEECCCCccccCCC----CcccccCCccCEEECcC-CCCCccCcc-ccCCCCEEEC
Confidence            999986 6666664  3458999999999987422  2    233332 4899999988 467777654 3378999999


Q ss_pred             eccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceec
Q 019416          167 VNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFP  246 (341)
Q Consensus       167 ~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~  246 (341)
                      +++. +..++..                .   +.  .+++|+.|+++++.-....+..+..+++|+.|++++| .+..+|
T Consensus       201 ~~n~-i~~~~~~----------------~---l~--~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~lp  257 (332)
T 2ft3_A          201 DHNK-IQAIELE----------------D---LL--RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN-KLSRVP  257 (332)
T ss_dssp             CSSC-CCCCCTT----------------S---ST--TCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSS-CCCBCC
T ss_pred             CCCc-CCccCHH----------------H---hc--CCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCC-cCeecC
Confidence            8753 3332210                0   11  3446999999986433333457788899999999986 466777


Q ss_pred             CCCCCCCCcceEecccCcccccchh-hhcc------CCCcCeEeecCCCCCc--cCCCC--CCCCCccEEEeecCC
Q 019416          247 EGGLPNTSLTSLLISECENLMSLPH-QIHK------ATSLQDLSVSGCPSLM--SFPHG--GLPPNLISLGIIDCE  311 (341)
Q Consensus       247 ~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~------l~~L~~L~l~~c~~l~--~~~~~--~~~~~L~~L~l~~c~  311 (341)
                      .....+++|++|+++++ .++.++. .+..      .++|+.+++.+++ +.  .++..  ...++|+.+++.++.
T Consensus       258 ~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          258 AGLPDLKLLQVVYLHTN-NITKVGVNDFCPVGFGVKRAYYNGISLFNNP-VPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             TTGGGCTTCCEEECCSS-CCCBCCTTSSSCSSCCSSSCCBSEEECCSSS-SCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             hhhhcCccCCEEECCCC-CCCccChhHccccccccccccccceEeecCc-ccccccCcccccccchhhhhhccccc
Confidence            65555679999999985 5777654 2222      4678999998864 43  33322  235788888887764

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.68  E-value=2.8e-15  Score=140.54  Aligned_cols=232  Identities=16%  Similarity=0.206  Sum_probs=171.7

Q ss_pred             CcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCCccE
Q 019416           41 TLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTTLKR  114 (341)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~  114 (341)
                      ....++..+ ..++.+|..+.  ++++.|+++++ .+..+    +..  +++|++|++++| .+..++.  ...+++|++
T Consensus        44 ~~~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~--l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~  116 (440)
T 3zyj_A           44 QFSKVICVR-KNLREVPDGIS--TNTRLLNLHEN-QIQIIKVNSFKH--LRHLEILQLSRN-HIRTIEIGAFNGLANLNT  116 (440)
T ss_dssp             TSCEEECCS-CCCSSCCSCCC--TTCSEEECCSC-CCCEECTTTTSS--CSSCCEEECCSS-CCCEECGGGGTTCSSCCE
T ss_pred             CCCEEEeCC-CCcCcCCCCCC--CCCcEEEccCC-cCCeeCHHHhhC--CCCCCEEECCCC-cCCccChhhccCCccCCE
Confidence            356777765 56777776543  79999999994 56554    888  999999999986 5666653  344799999


Q ss_pred             EEEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCCc
Q 019416          115 LKICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG  189 (341)
Q Consensus       115 L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~  189 (341)
                      |++++|. +..    ++.. +.  ++|++|++++ +.++.++..  ..+++|+.|+++++..+..++..           
T Consensus       117 L~L~~n~-l~~----~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-----------  179 (440)
T 3zyj_A          117 LELFDNR-LTT----IPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-----------  179 (440)
T ss_dssp             EECCSSC-CSS----CCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-----------
T ss_pred             EECCCCc-CCe----eCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-----------
Confidence            9999986 444    5543 33  8999999988 467777654  45789999999987776655431           


Q ss_pred             CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCccccc
Q 019416          190 PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLMS  268 (341)
Q Consensus       190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~  268 (341)
                           .   +  ..+++|+.|+++++ .+..+| .+..+++|+.|+++++ .+..++. ....+++|++|+++++ .++.
T Consensus       180 -----~---~--~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~  245 (440)
T 3zyj_A          180 -----A---F--EGLSNLRYLNLAMC-NLREIP-NLTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQS-QIQV  245 (440)
T ss_dssp             -----T---T--TTCSSCCEEECTTS-CCSSCC-CCTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTC-CCCE
T ss_pred             -----h---h--hcccccCeecCCCC-cCcccc-ccCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCC-ceeE
Confidence                 0   1  13447999999986 556666 4677899999999997 4555544 3344679999999986 5776


Q ss_pred             ch-hhhccCCCcCeEeecCCCCCccCCCCCC--CCCccEEEeecCC
Q 019416          269 LP-HQIHKATSLQDLSVSGCPSLMSFPHGGL--PPNLISLGIIDCE  311 (341)
Q Consensus       269 l~-~~l~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~  311 (341)
                      ++ ..+..+++|+.|+++++ .++.++...+  .++|+.|++.+++
T Consensus       246 ~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          246 IERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             ECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             EChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            64 46788999999999884 6777776533  5899999998864

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.68  E-value=5.8e-16  Score=149.67  Aligned_cols=249  Identities=17%  Similarity=0.125  Sum_probs=172.0

Q ss_pred             cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416           34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL  112 (341)
Q Consensus        34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L  112 (341)
                      ..+..+++|++|+++++ .++.+|..+..+ +|++|++++| .+..+ ...  +++|+.|+++++......+. ..+++|
T Consensus       276 ~~~~~l~~L~~L~l~~~-~l~~l~~~~~~~-~L~~L~l~~n-~~~~l~~~~--l~~L~~L~l~~n~~~~~~~~-~~~~~L  349 (570)
T 2z63_A          276 DLFNCLTNVSSFSLVSV-TIERVKDFSYNF-GWQHLELVNC-KFGQFPTLK--LKSLKRLTFTSNKGGNAFSE-VDLPSL  349 (570)
T ss_dssp             TTTGGGTTCSEEEEESC-EECSCCBCCSCC-CCSEEEEESC-BCSSCCBCB--CSSCCEEEEESCBSCCBCCC-CBCTTC
T ss_pred             hhhcCcCcccEEEecCc-cchhhhhhhccC-CccEEeeccC-cccccCccc--ccccCEEeCcCCcccccccc-ccCCCC
Confidence            44566788888888876 445677767777 8888888885 44444 556  88888888888654444433 557888


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCcceeeeCCCCCCc
Q 019416          113 KRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG  189 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~  189 (341)
                      ++|++++|......  ..+..+.  ++|++|+++++ .+..++.. ..+++|+.|+++++. +...+..           
T Consensus       350 ~~L~l~~n~l~~~~--~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~-----------  414 (570)
T 2z63_A          350 EFLDLSRNGLSFKG--CCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEF-----------  414 (570)
T ss_dssp             CEEECCSSCCBEEE--EEEHHHHTCSCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSE-EESCTTS-----------
T ss_pred             CEEeCcCCccCccc--cccccccccCccCEEECCCC-ccccccccccccCCCCEEEccCCc-cccccch-----------
Confidence            88888887632110  0022222  88888888874 45554433 455788888887753 2211100           


Q ss_pred             CCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCC-ceecCCCCCCCCcceEecccCccccc
Q 019416          190 PEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSL-ESFPEGGLPNTSLTSLLISECENLMS  268 (341)
Q Consensus       190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~~~~~~~~~~~L~~L~l~~~~~l~~  268 (341)
                        .  .   +  ..+++|+.|++++|......|..+..+++|+.|++++|.-. ..+|.....+++|++|++++|. ++.
T Consensus       415 --~--~---~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~  484 (570)
T 2z63_A          415 --S--V---F--LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQ  484 (570)
T ss_dssp             --C--T---T--TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCE
T ss_pred             --h--h---h--hcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-ccc
Confidence              0  0   1  14457999999998765666788889999999999997533 3566555556799999999974 666


Q ss_pred             c-hhhhccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCCCCC
Q 019416          269 L-PHQIHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLI  314 (341)
Q Consensus       269 l-~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~  314 (341)
                      + |..+..+++|++|++++| .+..++..  ...++|++|++++++...
T Consensus       485 ~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          485 LSPTAFNSLSSLQVLNMASN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             ECTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CChhhhhcccCCCEEeCCCC-cCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            5 778899999999999986 67777654  336899999999976443

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.68  E-value=3.6e-15  Score=145.13  Aligned_cols=93  Identities=27%  Similarity=0.276  Sum_probs=51.1

Q ss_pred             ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeec
Q 019416          206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVS  285 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~  285 (341)
                      +|+.|+++++ .+..+|..   +++|+.|++++| .++.+| ..  +++|++|+++++ .++.+|.   .+++|+.|+++
T Consensus       202 ~L~~L~L~~N-~l~~l~~~---~~~L~~L~Ls~N-~L~~lp-~~--l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls  269 (622)
T 3g06_A          202 ELYKLWAYNN-RLTSLPAL---PSGLKELIVSGN-RLTSLP-VL--PSELKELMVSGN-RLTSLPM---LPSGLLSLSVY  269 (622)
T ss_dssp             TCCEEECCSS-CCSSCCCC---CTTCCEEECCSS-CCSCCC-CC--CTTCCEEECCSS-CCSCCCC---CCTTCCEEECC
T ss_pred             hhhEEECcCC-cccccCCC---CCCCCEEEccCC-ccCcCC-CC--CCcCcEEECCCC-CCCcCCc---ccccCcEEeCC
Confidence            4666666664 33444432   256666666664 344444 11  246666666664 4666654   45566666666


Q ss_pred             CCCCCccCCCC-CCCCCccEEEeecCC
Q 019416          286 GCPSLMSFPHG-GLPPNLISLGIIDCE  311 (341)
Q Consensus       286 ~c~~l~~~~~~-~~~~~L~~L~l~~c~  311 (341)
                      +| .++.+|.. ...++|+.|++.+++
T Consensus       270 ~N-~L~~lp~~l~~l~~L~~L~L~~N~  295 (622)
T 3g06_A          270 RN-QLTRLPESLIHLSSETTVNLEGNP  295 (622)
T ss_dssp             SS-CCCSCCGGGGGSCTTCEEECCSCC
T ss_pred             CC-CCCcCCHHHhhccccCEEEecCCC
Confidence            53 45555543 234566666666654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.67  E-value=3.4e-15  Score=140.50  Aligned_cols=231  Identities=15%  Similarity=0.205  Sum_probs=164.6

Q ss_pred             cCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCCccEE
Q 019416           42 LESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTTLKRL  115 (341)
Q Consensus        42 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L  115 (341)
                      ...++.++ ..++.+|..+.  ++++.|+++++ .+..+    +..  +++|++|+++++ .+..++.  ...+++|++|
T Consensus        56 ~~~v~c~~-~~l~~iP~~~~--~~l~~L~L~~n-~i~~~~~~~~~~--l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L  128 (452)
T 3zyi_A           56 FSKVVCTR-RGLSEVPQGIP--SNTRYLNLMEN-NIQMIQADTFRH--LHHLEVLQLGRN-SIRQIEVGAFNGLASLNTL  128 (452)
T ss_dssp             SCEEECCS-SCCSSCCSCCC--TTCSEEECCSS-CCCEECTTTTTT--CTTCCEEECCSS-CCCEECTTTTTTCTTCCEE
T ss_pred             CcEEEECC-CCcCccCCCCC--CCccEEECcCC-cCceECHHHcCC--CCCCCEEECCCC-ccCCcChhhccCcccCCEE
Confidence            45677665 46677776443  79999999984 55544    788  999999999986 6666653  3447999999


Q ss_pred             EEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCCcC
Q 019416          116 KICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGP  190 (341)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~  190 (341)
                      ++++|. +..    ++.. +.  ++|++|++++ +.++.++..  ..+++|+.|+++++..+..++..            
T Consensus       129 ~L~~n~-l~~----~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~------------  190 (452)
T 3zyi_A          129 ELFDNW-LTV----IPSGAFEYLSKLRELWLRN-NPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG------------  190 (452)
T ss_dssp             ECCSSC-CSB----CCTTTSSSCTTCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT------------
T ss_pred             ECCCCc-CCc----cChhhhcccCCCCEEECCC-CCcceeCHhHHhcCCcccEEeCCCCCCccccChh------------
Confidence            999986 444    5443 33  8999999988 467777654  45688999999887777655431            


Q ss_pred             CCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCcccccc
Q 019416          191 EGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLMSL  269 (341)
Q Consensus       191 ~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l  269 (341)
                          .   +  ..+++|+.|+++++ .+..+| .+..+++|+.|+++++. +..++. ....+++|++|+++++ .++.+
T Consensus       191 ----~---~--~~l~~L~~L~L~~n-~l~~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~  257 (452)
T 3zyi_A          191 ----A---F--EGLFNLKYLNLGMC-NIKDMP-NLTPLVGLEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNS-QVSLI  257 (452)
T ss_dssp             ----T---T--TTCTTCCEEECTTS-CCSSCC-CCTTCTTCCEEECTTSC-CSEECGGGGTTCTTCCEEECTTS-CCCEE
T ss_pred             ----h---c--cCCCCCCEEECCCC-cccccc-cccccccccEEECcCCc-CcccCcccccCccCCCEEEeCCC-cCceE
Confidence                0   1  13446899999886 455564 46778899999998864 444433 3333568999999886 46655


Q ss_pred             -hhhhccCCCcCeEeecCCCCCccCCCCCC--CCCccEEEeecCC
Q 019416          270 -PHQIHKATSLQDLSVSGCPSLMSFPHGGL--PPNLISLGIIDCE  311 (341)
Q Consensus       270 -~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~  311 (341)
                       +..+..+++|+.|+++++ .+..++...+  .++|+.|++.+++
T Consensus       258 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          258 ERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             CTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred             CHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCCC
Confidence             456788899999999875 6777776533  5789999988764

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.65  E-value=1.8e-15  Score=137.68  Aligned_cols=240  Identities=17%  Similarity=0.172  Sum_probs=158.9

Q ss_pred             CCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCC
Q 019416           39 GETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTT  111 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~  111 (341)
                      .++|++|+++++ .++.++. .+..+++|++|+++++ .+..+    +..  +++|++|++++| .+..++.  ...+++
T Consensus        51 ~~~L~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~  125 (353)
T 2z80_A           51 TEAVKSLDLSNN-RITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSS--LGSLEHLDLSYN-YLSNLSSSWFKPLSS  125 (353)
T ss_dssp             CTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTT--CTTCCEEECCSS-CCSSCCHHHHTTCTT
T ss_pred             cccCcEEECCCC-cCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCC--CCCCCEEECCCC-cCCcCCHhHhCCCcc
Confidence            357888888875 4555554 5777888888888874 45444    667  888888888875 5555554  345788


Q ss_pred             ccEEEEeCCCChHHHHHHhhh--hcc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCcccc-CcceeeeCC
Q 019416          112 LKRLKICDCTNAELILKVLMD--QKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSL-GESSKIRNC  184 (341)
Q Consensus       112 L~~L~l~~~~~~~~~~~~~~~--~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~-~~~l~l~~~  184 (341)
                      |++|++++|. +..    +|.  .+.  ++|++|++++++.++.++..  ..+++|+.|+++++. +..+ +..      
T Consensus       126 L~~L~L~~n~-l~~----l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~------  193 (353)
T 2z80_A          126 LTFLNLLGNP-YKT----LGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASD-LQSYEPKS------  193 (353)
T ss_dssp             CSEEECTTCC-CSS----SCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTT------
T ss_pred             CCEEECCCCC-Ccc----cCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCC-cCccCHHH------
Confidence            8888888875 334    554  222  88888888876666666543  456788888887753 2222 110      


Q ss_pred             CCCCcCCCcccccccccccccccceEeeccCcCCCcccccC-CCCCCcCeEEeecCCCCceecCCCC----CCCCcceEe
Q 019416          185 DSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDM-HNFTDLNLLSISNCPSLESFPEGGL----PNTSLTSLL  259 (341)
Q Consensus       185 ~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~~~~~~~~----~~~~L~~L~  259 (341)
                                    +.  .+++|+.|+++++. +..+|..+ ..+++|+.|+++++. +..++...+    ..+.++.++
T Consensus       194 --------------l~--~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~  255 (353)
T 2z80_A          194 --------------LK--SIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFT  255 (353)
T ss_dssp             --------------TT--TCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEE
T ss_pred             --------------Hh--ccccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc-cccccccccccccccchhhccc
Confidence                          11  33468888998864 45555433 347889999998864 333322111    124666777


Q ss_pred             cccCc----ccccchhhhccCCCcCeEeecCCCCCccCCCCC--CCCCccEEEeecCCCCC
Q 019416          260 ISECE----NLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGG--LPPNLISLGIIDCENLI  314 (341)
Q Consensus       260 l~~~~----~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~~~  314 (341)
                      +.++.    .+..+|..+..+++|+.|+++++ .++.++...  ..++|++|++.+++...
T Consensus       256 L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          256 FRNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             EESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence            76642    12346778889999999999885 677888753  36899999999886443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.65  E-value=1.9e-16  Score=141.85  Aligned_cols=238  Identities=14%  Similarity=0.065  Sum_probs=171.1

Q ss_pred             CCccEEeccCCCCchh---h---hcccCCCCcceEeeec-CCCCccccC-CCCCCCccEEEEeCCCChHHHHHHhhhhcc
Q 019416           64 TTVKQLKINKCPDLEV---L---LHRMAYTSLEYLEFSS-CLFFSNSKQ-DYFPTTLKRLKICDCTNAELILKVLMDQKG  135 (341)
Q Consensus        64 ~~L~~L~l~~~~~l~~---~---~~~~~l~~L~~L~l~~-~~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~  135 (341)
                      .++++|+++++ .+..   +   +..  +++|++|++++ +.....+|. ...+++|++|++++|.....    +|..+.
T Consensus        50 ~~l~~L~L~~~-~l~~~~~~~~~l~~--l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~  122 (313)
T 1ogq_A           50 YRVNNLDLSGL-NLPKPYPIPSSLAN--LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA----IPDFLS  122 (313)
T ss_dssp             CCEEEEEEECC-CCSSCEECCGGGGG--CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE----CCGGGG
T ss_pred             ceEEEEECCCC-CccCCcccChhHhC--CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc----CCHHHh
Confidence            68999999995 4543   3   888  99999999995 433335553 45589999999999875545    676666


Q ss_pred             --cccceEeecCCCCcc-ccCCC-CCccccceEEeeccCCccccCcceeeeCCCCCCcCCCccccccccccccc-ccceE
Q 019416          136 --LALESLEVDGCSSLF-SLPIN-QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTL-ELREL  210 (341)
Q Consensus       136 --~~L~~L~l~~~~~l~-~l~~~-~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~-~L~~L  210 (341)
                        ++|++|+++++ .++ .+|.. ..+++|++|+++++.--..+|..+                 .     .++ +|+.|
T Consensus       123 ~l~~L~~L~Ls~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-----------------~-----~l~~~L~~L  179 (313)
T 1ogq_A          123 QIKTLVTLDFSYN-ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-----------------G-----SFSKLFTSM  179 (313)
T ss_dssp             GCTTCCEEECCSS-EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG-----------------G-----CCCTTCCEE
T ss_pred             CCCCCCEEeCCCC-ccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH-----------------h-----hhhhcCcEE
Confidence              99999999985 554 45443 567899999998864222333211                 1     222 59999


Q ss_pred             eeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCC
Q 019416          211 EIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSL  290 (341)
Q Consensus       211 ~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l  290 (341)
                      +++++.....+|..+..++ |+.|+++++.-....+.....+++|++|+++++ .++..+..+..+++|++|+++++ .+
T Consensus       180 ~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l  256 (313)
T 1ogq_A          180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN-SLAFDLGKVGLSKNLNGLDLRNN-RI  256 (313)
T ss_dssp             ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS-EECCBGGGCCCCTTCCEEECCSS-CC
T ss_pred             ECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC-ceeeecCcccccCCCCEEECcCC-cc
Confidence            9999765557788888876 999999986422233333334579999999996 46655556888999999999986 45


Q ss_pred             c-cCCCC-CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeCCCC
Q 019416          291 M-SFPHG-GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLP  337 (341)
Q Consensus       291 ~-~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C~  337 (341)
                      . .++.. ...++|++|+++++......+..  .++++|+.+++.+ ++
T Consensus       257 ~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~--~~l~~L~~l~l~~-N~  302 (313)
T 1ogq_A          257 YGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG--GNLQRFDVSAYAN-NK  302 (313)
T ss_dssp             EECCCGGGGGCTTCCEEECCSSEEEEECCCS--TTGGGSCGGGTCS-SS
T ss_pred             cCcCChHHhcCcCCCEEECcCCcccccCCCC--ccccccChHHhcC-CC
Confidence            4 55543 34689999999998554455554  7788999998888 54

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.64  E-value=4.6e-15  Score=132.23  Aligned_cols=105  Identities=27%  Similarity=0.303  Sum_probs=71.7

Q ss_pred             cccceEeeccCcCCC-cccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCcccccchh-hhccCCCcCe
Q 019416          205 LELRELEIWDCLELE-FLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLMSLPH-QIHKATSLQD  281 (341)
Q Consensus       205 ~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~  281 (341)
                      ++|+.|+++++.... .+|..+..+++|+.|++++|. +..++. ....+++|++|+++++ .++.++. .+..+++|+.
T Consensus       150 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~  227 (306)
T 2z66_A          150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQV  227 (306)
T ss_dssp             TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCE
T ss_pred             cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCE
Confidence            358888888764333 357778888888888888864 555533 3334568888888885 4666654 5778888999


Q ss_pred             EeecCCCCCccCCCC---CCCCCccEEEeecCCC
Q 019416          282 LSVSGCPSLMSFPHG---GLPPNLISLGIIDCEN  312 (341)
Q Consensus       282 L~l~~c~~l~~~~~~---~~~~~L~~L~l~~c~~  312 (341)
                      |+++++ .+......   ..+++|++|++++++.
T Consensus       228 L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          228 LDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             EECTTS-CCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             eECCCC-CCcccCHHHHHhhhccCCEEEccCCCe
Confidence            999885 45444332   2346899999988653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.63  E-value=1e-15  Score=145.37  Aligned_cols=232  Identities=11%  Similarity=0.088  Sum_probs=133.4

Q ss_pred             CCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCccE
Q 019416           38 TGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKR  114 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~  114 (341)
                      .+++|++|++++|. ++.+ |..+..+++|++|++++| .+...  +..  +++|++|++++| .+..++.   .++|++
T Consensus        32 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~l~~--l~~L~~L~Ls~N-~l~~l~~---~~~L~~  103 (487)
T 3oja_A           32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSN-VLYETLDLES--LSTLRTLDLNNN-YVQELLV---GPSIET  103 (487)
T ss_dssp             TGGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTS-CCEEEEECTT--CTTCCEEECCSS-EEEEEEE---CTTCCE
T ss_pred             cCCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCC-CCCCCccccc--CCCCCEEEecCC-cCCCCCC---CCCcCE
Confidence            45578888888753 4444 445667777888887774 34333  666  777777777764 4444432   256666


Q ss_pred             EEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcc
Q 019416          115 LKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGES  194 (341)
Q Consensus       115 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~  194 (341)
                      |++++|..                           +.++.. .+++|+.|+++++. +..++.                .
T Consensus       104 L~L~~N~l---------------------------~~~~~~-~l~~L~~L~L~~N~-l~~~~~----------------~  138 (487)
T 3oja_A          104 LHAANNNI---------------------------SRVSCS-RGQGKKNIYLANNK-ITMLRD----------------L  138 (487)
T ss_dssp             EECCSSCC---------------------------CCEEEC-CCSSCEEEECCSSC-CCSGGG----------------B
T ss_pred             EECcCCcC---------------------------CCCCcc-ccCCCCEEECCCCC-CCCCCc----------------h
Confidence            66666542                           222111 12345555554432 211110                0


Q ss_pred             cccccccccccccceEeeccCcCCCcccccCC-CCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhh
Q 019416          195 SLENMTSSHTLELRELEIWDCLELEFLPEDMH-NFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQI  273 (341)
Q Consensus       195 ~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~-~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l  273 (341)
                      .   +  ..+++|+.|+++++......|..+. .+++|+.|++++|. +..++... .+++|++|+++++ .++.+|..+
T Consensus       139 ~---~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~~~-~l~~L~~L~Ls~N-~l~~~~~~~  210 (487)
T 3oja_A          139 D---E--GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQV-VFAKLKTLDLSSN-KLAFMGPEF  210 (487)
T ss_dssp             C---G--GGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCEEECCC-CCTTCCEEECCSS-CCCEECGGG
T ss_pred             h---h--cCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCc-cccccccc-cCCCCCEEECCCC-CCCCCCHhH
Confidence            0   0  1233577777776543333455554 56778888887754 44444432 2468888888875 477777677


Q ss_pred             ccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCC-ccccccccCCCceeEEEE
Q 019416          274 HKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLI-PLSQWELHKLKHLNKYTI  332 (341)
Q Consensus       274 ~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~-~~~~~~i~~~~~L~~l~l  332 (341)
                      ..+++|+.|+++++ .+..+|.. ..+++|+.|++.+++... ..+.| +..++.|+.+.+
T Consensus       211 ~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~-~~~l~~L~~l~~  269 (487)
T 3oja_A          211 QSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAK  269 (487)
T ss_dssp             GGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCBCHHHHHHH-HTTCHHHHHHHH
T ss_pred             cCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCCCcCcchHHH-HHhCCCCcEEec
Confidence            77788888888774 56666654 445778888887775542 33333 455555555544

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.62  E-value=1.7e-15  Score=135.95  Aligned_cols=236  Identities=10%  Similarity=0.108  Sum_probs=138.5

Q ss_pred             CCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416           37 RTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK  113 (341)
Q Consensus        37 ~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~  113 (341)
                      ..+++|++|++++| .++.+ +..+..+++|++|++++| .+...  +..  +++|++|++++| .+..++.   .++|+
T Consensus        31 ~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~--l~~L~~L~Ls~n-~l~~l~~---~~~L~  102 (317)
T 3o53_A           31 QSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNLSSN-VLYETLDLES--LSTLRTLDLNNN-YVQELLV---GPSIE  102 (317)
T ss_dssp             TTGGGCSEEECTTS-CCCCCCHHHHTTCTTCCEEECTTS-CCEEEEEETT--CTTCCEEECCSS-EEEEEEE---CTTCC
T ss_pred             ccCCCCCEEECcCC-ccCcCCHHHhhCCCcCCEEECCCC-cCCcchhhhh--cCCCCEEECcCC-ccccccC---CCCcC
Confidence            35678888888876 44444 345777888888888874 44444  777  888888888875 4554442   37788


Q ss_pred             EEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCCcCC
Q 019416          114 RLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPE  191 (341)
Q Consensus       114 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~  191 (341)
                      +|++++|....     ++....++|++|+++++ .++.++..  ..+++|+.|+++++. +..++...            
T Consensus       103 ~L~l~~n~l~~-----~~~~~~~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~------------  163 (317)
T 3o53_A          103 TLHAANNNISR-----VSCSRGQGKKNIYLANN-KITMLRDLDEGCRSRVQYLDLKLNE-IDTVNFAE------------  163 (317)
T ss_dssp             EEECCSSCCSE-----EEECCCSSCEEEECCSS-CCCSGGGBCTGGGSSEEEEECTTSC-CCEEEGGG------------
T ss_pred             EEECCCCccCC-----cCccccCCCCEEECCCC-CCCCccchhhhccCCCCEEECCCCC-CCcccHHH------------
Confidence            88888876322     22222277888888773 55555432  345678888887653 33221100            


Q ss_pred             CcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchh
Q 019416          192 GESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPH  271 (341)
Q Consensus       192 ~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~  271 (341)
                             +. ..+++|+.|+++++. +..++.. ..+++|++|++++| .+..++.....+++|++|+++++ .++.+|.
T Consensus       164 -------~~-~~l~~L~~L~L~~N~-l~~~~~~-~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~  231 (317)
T 3o53_A          164 -------LA-ASSDTLEHLNLQYNF-IYDVKGQ-VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEK  231 (317)
T ss_dssp             -------GG-GGTTTCCEEECTTSC-CCEEECC-CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECT
T ss_pred             -------Hh-hccCcCCEEECCCCc-Ccccccc-cccccCCEEECCCC-cCCcchhhhcccCcccEEECcCC-cccchhh
Confidence                   10 023357777777653 4444322 23667777777775 35555544334467777777775 4667776


Q ss_pred             hhccCCCcCeEeecCCCCC-ccCCCC-CCCCCccEEEeecCC
Q 019416          272 QIHKATSLQDLSVSGCPSL-MSFPHG-GLPPNLISLGIIDCE  311 (341)
Q Consensus       272 ~l~~l~~L~~L~l~~c~~l-~~~~~~-~~~~~L~~L~l~~c~  311 (341)
                      .+..+++|+.|++++++-. ..++.. ...+.|+.+++.++.
T Consensus       232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~  273 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK  273 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence            6677777777777764322 122111 223455555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.60  E-value=1e-14  Score=132.75  Aligned_cols=240  Identities=18%  Similarity=0.137  Sum_probs=161.0

Q ss_pred             CCchhhhhhcccCCC--ccc-cCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCC
Q 019416           16 PVPKNFLALALFPDE--DKI-LGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYT   87 (341)
Q Consensus        16 ~~~~~~~~l~~~~~~--~~~-~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~   87 (341)
                      .+++.+..|.+..+.  ... ..+..+++|++|++++| .++.+ +..+..+++|++|++++| .+..+    ++.  ++
T Consensus        49 ~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~--l~  124 (353)
T 2z80_A           49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKP--LS  124 (353)
T ss_dssp             TCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTT--CT
T ss_pred             cccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCC--Cc
Confidence            344566666665442  222 25788999999999987 55555 456888999999999994 55554    788  99


Q ss_pred             CcceEeeecCCCCccccC---CCCCCCccEEEEeCCCChHHHHHHhh-hhcc--cccceEeecCCCCcccc-CCC-CCcc
Q 019416           88 SLEYLEFSSCLFFSNSKQ---DYFPTTLKRLKICDCTNAELILKVLM-DQKG--LALESLEVDGCSSLFSL-PIN-QLPA  159 (341)
Q Consensus        88 ~L~~L~l~~~~~l~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~--~~L~~L~l~~~~~l~~l-~~~-~~~~  159 (341)
                      +|++|+++++ .+..++.   ...+++|++|++++|..+..    ++ ..+.  ++|++|+++++ .++.. +.. ..++
T Consensus       125 ~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~  198 (353)
T 2z80_A          125 SLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDTFTK----IQRKDFAGLTFLEELEIDAS-DLQSYEPKSLKSIQ  198 (353)
T ss_dssp             TCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCE----ECTTTTTTCCEEEEEEEEET-TCCEECTTTTTTCS
T ss_pred             cCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCccccc----cCHHHccCCCCCCEEECCCC-CcCccCHHHHhccc
Confidence            9999999986 6667765   34589999999999864554    43 3333  89999999985 45554 332 5568


Q ss_pred             ccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccC---CCCCCcCeEEe
Q 019416          160 TLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDM---HNFTDLNLLSI  236 (341)
Q Consensus       160 ~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~---~~l~~L~~L~l  236 (341)
                      +|+.|+++++. +..++...                   +  ..+++|+.|+++++.-....+..+   ...+.++.+++
T Consensus       199 ~L~~L~l~~n~-l~~~~~~~-------------------~--~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L  256 (353)
T 2z80_A          199 NVSHLILHMKQ-HILLLEIF-------------------V--DVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF  256 (353)
T ss_dssp             EEEEEEEECSC-STTHHHHH-------------------H--HHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEE
T ss_pred             cCCeecCCCCc-cccchhhh-------------------h--hhcccccEEECCCCccccccccccccccccchhhcccc
Confidence            89999998864 33333200                   0  123468999998864322212221   23456788888


Q ss_pred             ecCCCC----ceecCCCCCCCCcceEecccCcccccchhh-hccCCCcCeEeecCCC
Q 019416          237 SNCPSL----ESFPEGGLPNTSLTSLLISECENLMSLPHQ-IHKATSLQDLSVSGCP  288 (341)
Q Consensus       237 ~~c~~l----~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~  288 (341)
                      .++.--    ..++.....+++|++|+++++ .++.+|.. +..+++|++|++++++
T Consensus       257 ~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          257 RNVKITDESLFQVMKLLNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             ESCBCCHHHHHHHHHHHHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             ccccccCcchhhhHHHHhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCC
Confidence            775321    112222223468999999986 58888876 4888999999998864

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.59  E-value=2.2e-14  Score=127.85  Aligned_cols=235  Identities=21%  Similarity=0.188  Sum_probs=148.1

Q ss_pred             CeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCcccc----CCCCCCCccE
Q 019416           43 ESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSK----QDYFPTTLKR  114 (341)
Q Consensus        43 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~----~~~~~~~L~~  114 (341)
                      +.++.++ ..++.+|..+.  ++|++|+++++ .+..+    +..  +++|++|+++++ .+..+.    ....+++|++
T Consensus        10 ~~l~c~~-~~l~~ip~~~~--~~l~~L~L~~n-~l~~i~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~~~~~~L~~   82 (306)
T 2z66_A           10 TEIRCNS-KGLTSVPTGIP--SSATRLELESN-KLQSLPHGVFDK--LTQLTKLSLSSN-GLSFKGCCSQSDFGTTSLKY   82 (306)
T ss_dssp             TEEECCS-SCCSSCCSCCC--TTCCEEECCSS-CCCCCCTTTTTT--CTTCSEEECCSS-CCCEEEEEEHHHHSCSCCCE
T ss_pred             CEEEcCC-CCcccCCCCCC--CCCCEEECCCC-ccCccCHhHhhc--cccCCEEECCCC-ccCcccCcccccccccccCE
Confidence            4566665 35666665332  67888888874 44443    566  777777777765 333221    1122456666


Q ss_pred             EEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcc
Q 019416          115 LKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGES  194 (341)
Q Consensus       115 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~  194 (341)
                      |++++|. +..    +|..+                     ..+++|++|+++++. +..++..               .
T Consensus        83 L~Ls~n~-i~~----l~~~~---------------------~~l~~L~~L~l~~n~-l~~~~~~---------------~  120 (306)
T 2z66_A           83 LDLSFNG-VIT----MSSNF---------------------LGLEQLEHLDFQHSN-LKQMSEF---------------S  120 (306)
T ss_dssp             EECCSCS-EEE----EEEEE---------------------ETCTTCCEEECTTSE-EESSTTT---------------T
T ss_pred             EECCCCc-ccc----Chhhc---------------------CCCCCCCEEECCCCc-ccccccc---------------h
Confidence            6666654 222    22222                     223455555555431 2211110               0


Q ss_pred             cccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCc-eecCCCCCCCCcceEecccCcccccc-hhh
Q 019416          195 SLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLE-SFPEGGLPNTSLTSLLISECENLMSL-PHQ  272 (341)
Q Consensus       195 ~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~l-~~~  272 (341)
                      .   +  ..+++|+.|+++++......+..+..+++|++|+++++.-.. ..+.....+++|++|+++++ .++.+ |..
T Consensus       121 ~---~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~  194 (306)
T 2z66_A          121 V---F--LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTA  194 (306)
T ss_dssp             T---T--TTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTT
T ss_pred             h---h--hhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCC-CcCCcCHHH
Confidence            0   1  133368888888875444556778889999999999975323 35555555679999999996 57766 567


Q ss_pred             hccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCC-CceeEEEEeC
Q 019416          273 IHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKL-KHLNKYTILG  334 (341)
Q Consensus       273 l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~-~~L~~l~l~~  334 (341)
                      +..+++|+.|+++++ .+..++..  ...++|++|+++++......+. .+..+ ++|++|++++
T Consensus       195 ~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~~~L~~L~L~~  257 (306)
T 2z66_A          195 FNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ-ELQHFPSSLAFLNLTQ  257 (306)
T ss_dssp             TTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSCCCBCSSS-SCCCCCTTCCEEECTT
T ss_pred             hcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCCCcccCHH-HHHhhhccCCEEEccC
Confidence            889999999999985 56666653  3468999999999865543333 35677 5999999998

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.58  E-value=5.4e-14  Score=127.86  Aligned_cols=213  Identities=20%  Similarity=0.227  Sum_probs=153.3

Q ss_pred             CCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CCCCC
Q 019416           39 GETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTT  111 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~  111 (341)
                      .+++++|+++++ .++.+|. .+.++++|++|++++|...+.+    +..  +++|+++.+.+++.+..++..  ..+++
T Consensus        29 ~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~--L~~l~~~l~~~~N~l~~l~~~~f~~l~~  105 (350)
T 4ay9_X           29 PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSN--LPKLHEIRIEKANNLLYINPEAFQNLPN  105 (350)
T ss_dssp             CTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCS--CTTCCEEEEEEETTCCEECTTSBCCCTT
T ss_pred             CCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhc--chhhhhhhcccCCcccccCchhhhhccc
Confidence            367999999985 6777775 4778999999999986433333    667  888887666555677777543  44789


Q ss_pred             ccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccCCCC---CccccceEEeeccCCccccCcceeeeCCC
Q 019416          112 LKRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLPINQ---LPATLRHLRIVNCMNLKSLGESSKIRNCD  185 (341)
Q Consensus       112 L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~~---~~~~L~~L~l~~~~~l~~~~~~l~l~~~~  185 (341)
                      |++|++++|. +..    ++....   .++..+++.++..+..++...   ....++.|+++++ .++.++...      
T Consensus       106 L~~L~l~~n~-l~~----~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~------  173 (350)
T 4ay9_X          106 LQYLLISNTG-IKH----LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSA------  173 (350)
T ss_dssp             CCEEEEEEEC-CSS----CCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTS------
T ss_pred             cccccccccc-ccc----CCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhh------
Confidence            9999999886 333    443322   566778887777888777652   2345777888764 455444311      


Q ss_pred             CCCcCCCcccccccccccccccceEeeccCcCCCcccc-cCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCc
Q 019416          186 SVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPE-DMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECE  264 (341)
Q Consensus       186 ~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~  264 (341)
                                   +   ..++|+++.+.+++.++.+|. .|..+++|+.|+++++ .++.+|...+.  +|++|.+.++.
T Consensus       174 -------------f---~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~--~L~~L~~l~~~  234 (350)
T 4ay9_X          174 -------------F---NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLE--NLKKLRARSTY  234 (350)
T ss_dssp             -------------S---TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCT--TCCEEECTTCT
T ss_pred             -------------c---cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhc--cchHhhhccCC
Confidence                         1   123588899988888888874 5688899999999986 57888776654  89999888888


Q ss_pred             ccccchhhhccCCCcCeEeecC
Q 019416          265 NLMSLPHQIHKATSLQDLSVSG  286 (341)
Q Consensus       265 ~l~~l~~~l~~l~~L~~L~l~~  286 (341)
                      .++.+| .+..+++|+.+++.+
T Consensus       235 ~l~~lP-~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          235 NLKKLP-TLEKLVALMEASLTY  255 (350)
T ss_dssp             TCCCCC-CTTTCCSCCEEECSC
T ss_pred             CcCcCC-CchhCcChhhCcCCC
Confidence            888888 578888999988864

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.58  E-value=2.7e-14  Score=122.68  Aligned_cols=100  Identities=18%  Similarity=0.158  Sum_probs=64.5

Q ss_pred             eEeeccCcCCCcccc-cCCCCCCcC-eEEeecCCCCceecCCCCCCCCcceEecccCcccccchh-hhccC-CCcCeEee
Q 019416          209 ELEIWDCLELEFLPE-DMHNFTDLN-LLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPH-QIHKA-TSLQDLSV  284 (341)
Q Consensus       209 ~L~l~~~~~l~~l~~-~~~~l~~L~-~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l-~~L~~L~l  284 (341)
                      .|+++++..+..++. .+..+++|+ .|+++++ .++.++...+..++|++|+++++..++.++. .+..+ ++|+.|++
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l  212 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV  212 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEEC
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEEC
Confidence            666666544555543 466677777 7777764 3556666544445778888877544666653 46667 78888888


Q ss_pred             cCCCCCccCCCCCCCCCccEEEeecCC
Q 019416          285 SGCPSLMSFPHGGLPPNLISLGIIDCE  311 (341)
Q Consensus       285 ~~c~~l~~~~~~~~~~~L~~L~l~~c~  311 (341)
                      ++ +.++.++.. .+++|+.|++.++.
T Consensus       213 ~~-N~l~~l~~~-~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          213 SQ-TSVTALPSK-GLEHLKELIARNTW  237 (239)
T ss_dssp             TT-CCCCCCCCT-TCTTCSEEECTTC-
T ss_pred             CC-CccccCChh-HhccCceeeccCcc
Confidence            76 456666654 45677888777654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.58  E-value=1.3e-13  Score=121.59  Aligned_cols=213  Identities=19%  Similarity=0.177  Sum_probs=127.6

Q ss_pred             cEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccC--CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceE
Q 019416           67 KQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESL  141 (341)
Q Consensus        67 ~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L  141 (341)
                      +.++.++ ..+..+ .+.  .++|++|+++++ .+..++.  ...+++|++|+++++.....    .+..+.  ++|++|
T Consensus        14 ~~~~c~~-~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L   85 (285)
T 1ozn_A           14 VTTSCPQ-QGLQAVPVGI--PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNVLARI----DAAAFTGLALLEQL   85 (285)
T ss_dssp             CEEECCS-SCCSSCCTTC--CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCCEE----CTTTTTTCTTCCEE
T ss_pred             eEEEcCc-CCcccCCcCC--CCCceEEEeeCC-cCCccCHHHcccCCCCCEEECCCCcccee----CHhhcCCccCCCEE
Confidence            4555554 345444 445  678888888875 5555553  34477888888888753222    233343  778888


Q ss_pred             eecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCC
Q 019416          142 EVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELE  219 (341)
Q Consensus       142 ~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~  219 (341)
                      +++++..++.++..  ..+++|++|+++++. +..++.              .  .   +  ..+++|+.|+++++. +.
T Consensus        86 ~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~--------------~--~---~--~~l~~L~~L~l~~n~-l~  142 (285)
T 1ozn_A           86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCG-LQELGP--------------G--L---F--RGLAALQYLYLQDNA-LQ  142 (285)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEECTTSC-CCCCCT--------------T--T---T--TTCTTCCEEECCSSC-CC
T ss_pred             eCCCCCCccccCHHHhcCCcCCCEEECCCCc-CCEECH--------------h--H---h--hCCcCCCEEECCCCc-cc
Confidence            88776546666432  445677777777653 222211              0  0   1  123357777777754 33


Q ss_pred             ccc-ccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccc-hhhhccCCCcCeEeecCCCCCccCCCC
Q 019416          220 FLP-EDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSL-PHQIHKATSLQDLSVSGCPSLMSFPHG  296 (341)
Q Consensus       220 ~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~  296 (341)
                      .++ ..+..+++|+.|+++++ .++.++.. ...+++|++|+++++. ++.+ |..+..+++|+.|+++++ .+..++..
T Consensus       143 ~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~  219 (285)
T 1ozn_A          143 ALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPTE  219 (285)
T ss_dssp             CCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCHH
T ss_pred             ccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCCHH
Confidence            443 44667777888888775 45555553 2234677788877753 5544 556777777788877764 45555432


Q ss_pred             --CCCCCccEEEeecCCCC
Q 019416          297 --GLPPNLISLGIIDCENL  313 (341)
Q Consensus       297 --~~~~~L~~L~l~~c~~~  313 (341)
                        ...++|+.|++++++..
T Consensus       220 ~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          220 ALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             HHTTCTTCCEEECCSSCEE
T ss_pred             HcccCcccCEEeccCCCcc
Confidence              33567777777776533

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.58  E-value=9.9e-14  Score=122.29  Aligned_cols=80  Identities=20%  Similarity=0.284  Sum_probs=52.7

Q ss_pred             ccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCcee-cCCCCCCCCcceEecccCcccccchh-hhccCCCcCeE
Q 019416          206 ELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESF-PEGGLPNTSLTSLLISECENLMSLPH-QIHKATSLQDL  282 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L  282 (341)
                      +|+.|+++++ .++.++ ..+..+++|+.|+++++. +..+ +.....+++|++|+++++ .++.++. .+..+++|+.|
T Consensus       154 ~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  230 (285)
T 1ozn_A          154 NLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYL  230 (285)
T ss_dssp             TCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEE
T ss_pred             CccEEECCCC-cccccCHHHhcCccccCEEECCCCc-ccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEE
Confidence            5777777765 344444 346677788888888764 4444 333334568888888875 4666653 47778888888


Q ss_pred             eecCCC
Q 019416          283 SVSGCP  288 (341)
Q Consensus       283 ~l~~c~  288 (341)
                      ++++++
T Consensus       231 ~l~~N~  236 (285)
T 1ozn_A          231 RLNDNP  236 (285)
T ss_dssp             ECCSSC
T ss_pred             eccCCC
Confidence            887754

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.56  E-value=6.9e-14  Score=120.07  Aligned_cols=125  Identities=17%  Similarity=0.237  Sum_probs=69.9

Q ss_pred             ccceEeeccCcCCCcccccCCCCCCcC---eEEeecCCCCceecCCCC-CCCCcc-eEecccCcccccchhhhccCCCcC
Q 019416          206 ELRELEIWDCLELEFLPEDMHNFTDLN---LLSISNCPSLESFPEGGL-PNTSLT-SLLISECENLMSLPHQIHKATSLQ  280 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~---~L~l~~c~~l~~~~~~~~-~~~~L~-~L~l~~~~~l~~l~~~l~~l~~L~  280 (341)
                      +|+.|+++++. +..+|. +..+++|+   .|++++++.++.++...+ .+++|+ +|+++++ .++.+|...-..++|+
T Consensus       106 ~L~~L~l~~n~-l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~  182 (239)
T 2xwt_C          106 LLKFLGIFNTG-LKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLD  182 (239)
T ss_dssp             TCCEEEEEEEC-CCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEE
T ss_pred             CCCEEeCCCCC-Cccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCC
Confidence            46666666542 344544 55555665   777777645666655322 245677 7777764 4666665332336677


Q ss_pred             eEeecCCCCCccCCCCCC--C-CCccEEEeecCCCCCccccccccCCCceeEEEEeCCCCC
Q 019416          281 DLSVSGCPSLMSFPHGGL--P-PNLISLGIIDCENLIPLSQWELHKLKHLNKYTILGGLPV  338 (341)
Q Consensus       281 ~L~l~~c~~l~~~~~~~~--~-~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C~~  338 (341)
                      .|+++++..++.++...+  . ++|++|+++++ .++..+.   ..+++|+.|++.+ |..
T Consensus       183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~---~~~~~L~~L~l~~-~~~  238 (239)
T 2xwt_C          183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPS---KGLEHLKELIARN-TWT  238 (239)
T ss_dssp             EEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCC---TTCTTCSEEECTT-C--
T ss_pred             EEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCCh---hHhccCceeeccC-ccC
Confidence            777776544666654422  3 56777777664 3333322   2456677777666 543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.55  E-value=1.2e-13  Score=122.13  Aligned_cols=193  Identities=21%  Similarity=0.216  Sum_probs=135.8

Q ss_pred             CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCCC
Q 019416           35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFPT  110 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  110 (341)
                      .++.+++++++++++ ..++.+|..+.  ++++.|+++++ .+..+    +..  +++|++|+++++ .+..++....++
T Consensus         5 ~~~~l~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~l~   77 (290)
T 1p9a_G            5 EVSKVASHLEVNCDK-RNLTALPPDLP--KDTTILHLSEN-LLYTFSLATLMP--YTRLTQLNLDRA-ELTKLQVDGTLP   77 (290)
T ss_dssp             EEECSTTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTS-CCSEEEGGGGTT--CTTCCEEECTTS-CCCEEECCSCCT
T ss_pred             cccccCCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCC-cCCccCHHHhhc--CCCCCEEECCCC-ccCcccCCCCCC
Confidence            356789999999997 46777776543  79999999984 55544    788  999999999985 677776667789


Q ss_pred             CccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCC
Q 019416          111 TLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDS  186 (341)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~  186 (341)
                      +|++|+++++. +..    +|..+.  ++|+.|++++ +.++.++..  ..+++|+.|+++++ .++.++..        
T Consensus        78 ~L~~L~Ls~N~-l~~----l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~--------  142 (290)
T 1p9a_G           78 VLGTLDLSHNQ-LQS----LPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGN-ELKTLPPG--------  142 (290)
T ss_dssp             TCCEEECCSSC-CSS----CCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTT--------
T ss_pred             cCCEEECCCCc-CCc----CchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCC-CCCccChh--------
Confidence            99999999986 445    665544  8888888887 467776643  45677888888775 34333320        


Q ss_pred             CCcCCCcccccccccccccccceEeeccCcCCCcccc-cCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCc
Q 019416          187 VVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPE-DMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECE  264 (341)
Q Consensus       187 l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~  264 (341)
                            .     +.  .+++|+.|+++++ .++.+|. .+..+++|+.|+++++ .+..+|...+..++|+++++.+++
T Consensus       143 ------~-----~~--~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          143 ------L-----LT--PTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             ------T-----TT--TCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             ------h-----cc--cccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCCC
Confidence                  0     11  3346888888775 4555554 4466778888888775 466677666666678888887643

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.54  E-value=2.8e-13  Score=123.08  Aligned_cols=232  Identities=18%  Similarity=0.181  Sum_probs=147.7

Q ss_pred             CeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCC--CCCCccEEE
Q 019416           43 ESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDY--FPTTLKRLK  116 (341)
Q Consensus        43 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~  116 (341)
                      ++++.++ ..++.+|..+  .+++++|++++ ++++.+    |..  +++|++|++++|.....++...  .+++++++.
T Consensus        12 ~~v~C~~-~~Lt~iP~~l--~~~l~~L~Ls~-N~i~~i~~~~f~~--l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l   85 (350)
T 4ay9_X           12 RVFLCQE-SKVTEIPSDL--PRNAIELRFVL-TKLRVIQKGAFSG--FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIR   85 (350)
T ss_dssp             TEEEEES-TTCCSCCTTC--CTTCSEEEEES-CCCSEECTTSSTT--CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEE
T ss_pred             CEEEecC-CCCCccCcCc--CCCCCEEEccC-CcCCCcCHHHHcC--CCCCCEEECcCCCCCCccChhHhhcchhhhhhh
Confidence            4556554 4677787654  36899999998 567665    778  9999999999875556666533  356666655


Q ss_pred             EeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCCCC--ccccceEEeeccCCccccCcceeeeCCCCCCcCC
Q 019416          117 ICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPINQL--PATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPE  191 (341)
Q Consensus       117 l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~~~--~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~  191 (341)
                      ..++..+..    ++.. +.  ++|++|++++ +.++.++...+  ..++..+++.++..+..++...            
T Consensus        86 ~~~~N~l~~----l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~------------  148 (350)
T 4ay9_X           86 IEKANNLLY----INPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNS------------  148 (350)
T ss_dssp             EEEETTCCE----ECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTS------------
T ss_pred             cccCCcccc----cCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhccccccccccccc------------
Confidence            444444554    4333 33  7888888877 45666555432  2345566666655555444310            


Q ss_pred             CcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccch
Q 019416          192 GESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLP  270 (341)
Q Consensus       192 ~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~  270 (341)
                          +..++    ..++.|++++ +.++.++.......+|++|++.++..++.++... ..+++|++|+++++ +++.+|
T Consensus       149 ----f~~~~----~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp  218 (350)
T 4ay9_X          149 ----FVGLS----FESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP  218 (350)
T ss_dssp             ----STTSB----SSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCC
T ss_pred             ----hhhcc----hhhhhhcccc-ccccCCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccC
Confidence                00011    1367777776 3556666655555677888887777777777644 23567888888875 577777


Q ss_pred             hhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeec
Q 019416          271 HQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIID  309 (341)
Q Consensus       271 ~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~  309 (341)
                      .  ..+.+|+.|.+.++..++.+|.-...++|+.+++.+
T Consensus       219 ~--~~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~  255 (350)
T 4ay9_X          219 S--YGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY  255 (350)
T ss_dssp             S--SSCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred             h--hhhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence            5  335667777777777777777645567777777754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.51  E-value=7.3e-15  Score=131.46  Aligned_cols=121  Identities=12%  Similarity=0.092  Sum_probs=70.6

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-----h-------cccCCCCcceEeeecCCCCccc
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-----L-------HRMAYTSLEYLEFSSCLFFSNS  103 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-----~-------~~~~l~~L~~L~l~~~~~l~~~  103 (341)
                      .+..++|++|+++++..  .+|..+..  .|+.|++++ +.+...     +       ..  +++|++|++++|.....+
T Consensus        39 ~~~~~~L~~l~l~~n~l--~~p~~~~~--~L~~L~L~~-n~l~~~~~~~~~~~~~~~~~~--l~~L~~L~L~~n~l~~~~  111 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE--ADLGQFTD--IIKSLSLKR-LTVRAARIPSRILFGALRVLG--ISGLQELTLENLEVTGTA  111 (312)
T ss_dssp             EEEEEECTTHHHHCCTT--CCCHHHHH--HHHHCCCCE-EEEEEEECBHHHHHHHHHHHT--TSCCCEEEEEEEBCBSCC
T ss_pred             EccCCCceeEeeccccc--ccHHHHHH--HHhhccccc-ccccCCCcCHHHHHHHHHhcC--cCCccEEEccCCcccchh
Confidence            45577788888887654  55554433  277788877 344221     2       25  888999999886433355


Q ss_pred             cCC---CCCCCccEEEEeCCCChHHHHHHhhhhcc-------cccceEeecCCCCccccCCC--CCccccceEEeecc
Q 019416          104 KQD---YFPTTLKRLKICDCTNAELILKVLMDQKG-------LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNC  169 (341)
Q Consensus       104 ~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~  169 (341)
                      |..   ..+++|++|++++|.. ..    .|..+.       ++|++|+++++ .++.++..  ..+++|+.|+++++
T Consensus       112 ~~~~~~~~l~~L~~L~Ls~N~l-~~----~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N  183 (312)
T 1wwl_A          112 PPPLLEATGPDLNILNLRNVSW-AT----RDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQVRVFPALSTLDLSDN  183 (312)
T ss_dssp             CCCSSSCCSCCCSEEEEESCBC-SS----SSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTCCCCSSCCEEECCSC
T ss_pred             HHHHHHhcCCCccEEEccCCCC-cc----hhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHhccCCCCCEEECCCC
Confidence            543   4578888888888763 22    221111       56666666653 44444422  33445555555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.50  E-value=6e-14  Score=136.18  Aligned_cols=281  Identities=13%  Similarity=0.044  Sum_probs=141.1

Q ss_pred             CCCCcCeEEcCCCCCCcc----ccccccCCCCccEEeccCCCCch-----hh---hcccCCCCcceEeeecCCCCccc--
Q 019416           38 TGETLESLEIDNLSSLAS----FLRSELAATTVKQLKINKCPDLE-----VL---LHRMAYTSLEYLEFSSCLFFSNS--  103 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~l~-----~~---~~~~~l~~L~~L~l~~~~~l~~~--  103 (341)
                      .+++|++|++++|.....    ++.....+++|++|+++++. +.     .+   +..  +++|++|++++|. +..+  
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~--~~~L~~L~L~~~~-~~~l~~  237 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARN--CRSLVSVKVGDFE-ILELVG  237 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHH--CTTCCEEECSSCB-GGGGHH
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhh--CCCCcEEeccCcc-HHHHHH
Confidence            578888888887642111    11112345666666666532 21     11   445  6666666665542 1111  


Q ss_pred             --------------------------cCCCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCC-
Q 019416          104 --------------------------KQDYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPI-  154 (341)
Q Consensus       104 --------------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~-  154 (341)
                                                .....+++|++|.++++. ...    +|....  ++|++|++++|. ++.... 
T Consensus       238 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~----l~~~~~~~~~L~~L~Ls~~~-l~~~~~~  311 (592)
T 3ogk_B          238 FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMG-PNE----MPILFPFAAQIRKLDLLYAL-LETEDHC  311 (592)
T ss_dssp             HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCC-TTT----GGGGGGGGGGCCEEEETTCC-CCHHHHH
T ss_pred             HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccc-hhH----HHHHHhhcCCCcEEecCCCc-CCHHHHH
Confidence                                      112335667777776643 222    444443  788888888875 432221 


Q ss_pred             --CCCccccceEEeeccCCcc-------ccC--cceeeeC----------CCCCCcCCCcccccccccccccccceEeec
Q 019416          155 --NQLPATLRHLRIVNCMNLK-------SLG--ESSKIRN----------CDSVVGPEGESSLENMTSSHTLELRELEIW  213 (341)
Q Consensus       155 --~~~~~~L~~L~l~~~~~l~-------~~~--~~l~l~~----------~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~  213 (341)
                        ...+++|++|++.++..-.       ..+  .++++++          |..++..    ++..+ ...+++|+.|.++
T Consensus       312 ~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~----~~~~l-~~~~~~L~~L~l~  386 (592)
T 3ogk_B          312 TLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR----GLIAL-AQGCQELEYMAVY  386 (592)
T ss_dssp             HHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH----HHHHH-HHHCTTCSEEEEE
T ss_pred             HHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHH----HHHHH-HhhCccCeEEEee
Confidence              1455778888876321000       001  1455553          4444330    00001 0134567777773


Q ss_pred             cCcCCCc-ccccCCC-CCCcCeEEeec---CCCCceecCC------CCCCCCcceEecccCcc-ccc-chhh-hccCCCc
Q 019416          214 DCLELEF-LPEDMHN-FTDLNLLSISN---CPSLESFPEG------GLPNTSLTSLLISECEN-LMS-LPHQ-IHKATSL  279 (341)
Q Consensus       214 ~~~~l~~-l~~~~~~-l~~L~~L~l~~---c~~l~~~~~~------~~~~~~L~~L~l~~~~~-l~~-l~~~-l~~l~~L  279 (341)
                       |..+.. .+..+.. +++|+.|+++.   |..++..|..      ...+++|++|+++.|.+ +.. .... ...+++|
T Consensus       387 -~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L  465 (592)
T 3ogk_B          387 -VSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNV  465 (592)
T ss_dssp             -ESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTC
T ss_pred             -cCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccc
Confidence             333322 2223322 66777777763   3444433211      11135777887765542 221 1112 2346778


Q ss_pred             CeEeecCCCCCccC--CCC-CCCCCccEEEeecCCCCC-ccccccccCCCceeEEEEeCCCC
Q 019416          280 QDLSVSGCPSLMSF--PHG-GLPPNLISLGIIDCENLI-PLSQWELHKLKHLNKYTILGGLP  337 (341)
Q Consensus       280 ~~L~l~~c~~l~~~--~~~-~~~~~L~~L~l~~c~~~~-~~~~~~i~~~~~L~~l~l~~~C~  337 (341)
                      ++|++++|. +...  +.. ...++|++|++++|. ++ ....+.+..+++|++|++++ |+
T Consensus       466 ~~L~L~~n~-l~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~ls~-n~  524 (592)
T 3ogk_B          466 RWMLLGYVG-ESDEGLMEFSRGCPNLQKLEMRGCC-FSERAIAAAVTKLPSLRYLWVQG-YR  524 (592)
T ss_dssp             CEEEECSCC-SSHHHHHHHHTCCTTCCEEEEESCC-CBHHHHHHHHHHCSSCCEEEEES-CB
T ss_pred             eEeeccCCC-CCHHHHHHHHhcCcccCeeeccCCC-CcHHHHHHHHHhcCccCeeECcC-Cc
Confidence            888887653 4321  111 224678888888877 44 22222245677888888887 65

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.49  E-value=7.6e-15  Score=142.53  Aligned_cols=81  Identities=16%  Similarity=0.150  Sum_probs=45.8

Q ss_pred             CCCCcCeEEcCCCCCCcccccccc-CCCCccEEeccCCCCchh--h---hcccCCCCcceEeeecCCCCcc-----ccCC
Q 019416           38 TGETLESLEIDNLSSLASFLRSEL-AATTVKQLKINKCPDLEV--L---LHRMAYTSLEYLEFSSCLFFSN-----SKQD  106 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~l~~--~---~~~~~l~~L~~L~l~~~~~l~~-----~~~~  106 (341)
                      .+++|++|++++|......+..+. .+++|++|++++|..+..  +   ...  +++|++|++++|. +..     ++..
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~--~~~L~~L~L~~~~-i~~~~~~~l~~~  179 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT--CRNLKELDLRESD-VDDVSGHWLSHF  179 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHH--CTTCCEEECTTCE-EECCCGGGGGGS
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHh--CCCCCEEeCcCCc-cCCcchHHHHHH
Confidence            467777777777642222222232 467777777777654443  2   446  7777777777653 222     1111


Q ss_pred             -CCCCCccEEEEeCCC
Q 019416          107 -YFPTTLKRLKICDCT  121 (341)
Q Consensus       107 -~~~~~L~~L~l~~~~  121 (341)
                       ..+++|++|++++|.
T Consensus       180 ~~~~~~L~~L~l~~~~  195 (594)
T 2p1m_B          180 PDTYTSLVSLNISCLA  195 (594)
T ss_dssp             CTTCCCCCEEECTTCC
T ss_pred             hhcCCcCcEEEecccC
Confidence             134566777766664

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.49  E-value=1.1e-13  Score=123.63  Aligned_cols=123  Identities=15%  Similarity=0.091  Sum_probs=80.7

Q ss_pred             CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416           35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL  112 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L  112 (341)
                      ....+++|++|+++++ .++.++ .+..+++|++|++++| .+.++  +..  +++|++|++++| .+..++....+++|
T Consensus        36 ~~~~l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n-~i~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~l~~L  109 (308)
T 1h6u_A           36 TQADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAPLKN--LTKITELELSGN-PLKNVSAIAGLQSI  109 (308)
T ss_dssp             CHHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTT--CCSCCEEECCSC-CCSCCGGGTTCTTC
T ss_pred             cHHHcCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCC-cCCCChhHcc--CCCCCEEEccCC-cCCCchhhcCCCCC
Confidence            3445888999999886 455555 4677889999999885 45444  777  888888888875 56666666667888


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeecc
Q 019416          113 KRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNC  169 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~  169 (341)
                      ++|++++|. +..    ++.... ++|++|+++++ .++.++....+++|+.|+++++
T Consensus       110 ~~L~l~~n~-l~~----~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n  161 (308)
T 1h6u_A          110 KTLDLTSTQ-ITD----VTPLAGLSNLQVLYLDLN-QITNISPLAGLTNLQYLSIGNA  161 (308)
T ss_dssp             CEEECTTSC-CCC----CGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCCEEECCSS
T ss_pred             CEEECCCCC-CCC----chhhcCCCCCCEEECCCC-ccCcCccccCCCCccEEEccCC
Confidence            888888875 333    333111 66777777663 4444443334455555555553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.48  E-value=1.4e-12  Score=115.34  Aligned_cols=192  Identities=20%  Similarity=0.212  Sum_probs=106.2

Q ss_pred             CCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCCCCccccce
Q 019416           86 YTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPINQLPATLRH  163 (341)
Q Consensus        86 l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~  163 (341)
                      +++++++++++ ..+..+|. ..+++++.|+++++.....    .+..+.  ++|++|++++ +.++.++....+++|+.
T Consensus         9 l~~l~~l~~~~-~~l~~ip~-~~~~~l~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~   81 (290)
T 1p9a_G            9 VASHLEVNCDK-RNLTALPP-DLPKDTTILHLSENLLYTF----SLATLMPYTRLTQLNLDR-AELTKLQVDGTLPVLGT   81 (290)
T ss_dssp             STTCCEEECTT-SCCSSCCS-CCCTTCCEEECTTSCCSEE----EGGGGTTCTTCCEEECTT-SCCCEEECCSCCTTCCE
T ss_pred             cCCccEEECCC-CCCCcCCC-CCCCCCCEEEcCCCcCCcc----CHHHhhcCCCCCEEECCC-CccCcccCCCCCCcCCE
Confidence            45555555554 24555543 2235566666666543221    222222  6666666665 34555554455566777


Q ss_pred             EEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCC
Q 019416          164 LRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSL  242 (341)
Q Consensus       164 L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l  242 (341)
                      |+++++ .+..+|..                    +  ..+++|+.|+++++ .++.++ ..+..+++|+.|+++++ .+
T Consensus        82 L~Ls~N-~l~~l~~~--------------------~--~~l~~L~~L~l~~N-~l~~l~~~~~~~l~~L~~L~L~~N-~l  136 (290)
T 1p9a_G           82 LDLSHN-QLQSLPLL--------------------G--QTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-EL  136 (290)
T ss_dssp             EECCSS-CCSSCCCC--------------------T--TTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CC
T ss_pred             EECCCC-cCCcCchh--------------------h--ccCCCCCEEECCCC-cCcccCHHHHcCCCCCCEEECCCC-CC
Confidence            777664 23333320                    0  12335777777764 334443 55666777777777775 34


Q ss_pred             ceecCCCC-CCCCcceEecccCcccccchhh-hccCCCcCeEeecCCCCCccCCCCCC-CCCccEEEeecCC
Q 019416          243 ESFPEGGL-PNTSLTSLLISECENLMSLPHQ-IHKATSLQDLSVSGCPSLMSFPHGGL-PPNLISLGIIDCE  311 (341)
Q Consensus       243 ~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~  311 (341)
                      ..++...+ .+++|++|+++++ .++.+|.. +..+++|+.|++++ +.++.++...+ ..+|+.+++.+++
T Consensus       137 ~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~-N~l~~ip~~~~~~~~L~~l~L~~Np  206 (290)
T 1p9a_G          137 KTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHGNP  206 (290)
T ss_dssp             CCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             CccChhhcccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCC-CcCCccChhhcccccCCeEEeCCCC
Confidence            55554332 3457777777764 46666653 46677777777766 35666665522 4567777776543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.48  E-value=1.8e-13  Score=129.87  Aligned_cols=212  Identities=15%  Similarity=0.135  Sum_probs=156.9

Q ss_pred             cCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhhhcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416           34 LGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK  113 (341)
Q Consensus        34 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~  113 (341)
                      ..+..+++|++|++++|. ++..++ +..+++|++|++++| .+.. +..  .++|++|++++| .+..++.. .+++|+
T Consensus        52 ~~~~~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N-~l~~-l~~--~~~L~~L~L~~N-~l~~~~~~-~l~~L~  123 (487)
T 3oja_A           52 ADLAPFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNN-YVQE-LLV--GPSIETLHAANN-NISRVSCS-RGQGKK  123 (487)
T ss_dssp             GGGTTCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSS-EEEE-EEE--CTTCCEEECCSS-CCCCEEEC-CCSSCE
T ss_pred             HHHhCCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCC-cCCC-CCC--CCCcCEEECcCC-cCCCCCcc-ccCCCC
Confidence            467889999999999874 555544 788999999999985 4433 445  689999999986 55555443 458999


Q ss_pred             EEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC---CCccccceEEeeccCCccccCcceeeeCCCCCC
Q 019416          114 RLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN---QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVV  188 (341)
Q Consensus       114 ~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~  188 (341)
                      .|++++|.....    .|..++  ++|+.|+++++ .++..+..   ..+++|+.|+++++. +..++.           
T Consensus       124 ~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~~-----------  186 (487)
T 3oja_A          124 NIYLANNKITML----RDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNF-IYDVKG-----------  186 (487)
T ss_dssp             EEECCSSCCCSG----GGBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSC-CCEEEC-----------
T ss_pred             EEECCCCCCCCC----CchhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCc-cccccc-----------
Confidence            999999975443    454444  89999999985 55554332   246899999999864 443322           


Q ss_pred             cCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccc-
Q 019416          189 GPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLM-  267 (341)
Q Consensus       189 ~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~-  267 (341)
                                .  ..+++|+.|+++++ .+..+|..+..+++|+.|++++| .+..+|.....+++|+.|++++++ +. 
T Consensus       187 ----------~--~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N~-l~c  251 (487)
T 3oja_A          187 ----------Q--VVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNG-FHC  251 (487)
T ss_dssp             ----------C--CCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCC-BCH
T ss_pred             ----------c--ccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCCC-CcC
Confidence                      0  02346999999985 56677777888999999999996 466777765556799999999865 54 


Q ss_pred             -cchhhhccCCCcCeEeec
Q 019416          268 -SLPHQIHKATSLQDLSVS  285 (341)
Q Consensus       268 -~l~~~l~~l~~L~~L~l~  285 (341)
                       .+|..+..++.|+.+.+.
T Consensus       252 ~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          252 GTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             HHHHHHHTTCHHHHHHHHH
T ss_pred             cchHHHHHhCCCCcEEecc
Confidence             567777888888887775

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.47  E-value=5.7e-15  Score=139.01  Aligned_cols=285  Identities=19%  Similarity=0.260  Sum_probs=159.7

Q ss_pred             CCCCCCCcCeEEcCCCCCCccc-ccc-ccCCC----CccEEeccCCCCchh-----h---hcccCCCCcceEeeecCCCC
Q 019416           35 GIRTGETLESLEIDNLSSLASF-LRS-ELAAT----TVKQLKINKCPDLEV-----L---LHRMAYTSLEYLEFSSCLFF  100 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~~-~~~-~~~l~----~L~~L~l~~~~~l~~-----~---~~~~~l~~L~~L~l~~~~~l  100 (341)
                      .+..+++|++|+++++. ++.. +.. ...++    +|++|++++|. +.+     +   +..  +++|++|++++|. +
T Consensus        51 ~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~--~~~L~~L~Ls~n~-i  125 (461)
T 1z7x_W           51 ALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRT--LPTLQELHLSDNL-L  125 (461)
T ss_dssp             HHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTS--CTTCCEEECCSSB-C
T ss_pred             HHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHcc--CCceeEEECCCCc-C
Confidence            35567888888888764 3321 211 12233    68888888753 331     2   667  7788888887753 3


Q ss_pred             ccccC-------CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-------CCccccceE
Q 019416          101 SNSKQ-------DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-------QLPATLRHL  164 (341)
Q Consensus       101 ~~~~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-------~~~~~L~~L  164 (341)
                      .....       ....++|++|++++|.........++..+.  ++|++|+++++. ++.....       ...++|++|
T Consensus       126 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L  204 (461)
T 1z7x_W          126 GDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEAL  204 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEE
T ss_pred             chHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEE
Confidence            32111       111346777777777533211111333332  677777777643 4332111       013467777


Q ss_pred             EeeccCCccc-----cCc---------ceeeeCCCCCCcCCCccccccccc---ccccccceEeeccCcCCCc-----cc
Q 019416          165 RIVNCMNLKS-----LGE---------SSKIRNCDSVVGPEGESSLENMTS---SHTLELRELEIWDCLELEF-----LP  222 (341)
Q Consensus       165 ~l~~~~~l~~-----~~~---------~l~l~~~~~l~~~~~~~~~~~l~~---~~~~~L~~L~l~~~~~l~~-----l~  222 (341)
                      +++++. +..     ++.         .++++++. +.+    .++..+..   ..+++|+.|++++| .+..     ++
T Consensus       205 ~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~----~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~  277 (461)
T 1z7x_W          205 KLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGD----VGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLC  277 (461)
T ss_dssp             ECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHH----HHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHH
T ss_pred             EccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CCh----HHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHH
Confidence            776652 222     111         33333332 111    00000100   02446999999987 4444     56


Q ss_pred             ccCCCCCCcCeEEeecCCCCce-----ecCC-CCCCCCcceEecccCccccc-----chhhhccCCCcCeEeecCCCCCc
Q 019416          223 EDMHNFTDLNLLSISNCPSLES-----FPEG-GLPNTSLTSLLISECENLMS-----LPHQIHKATSLQDLSVSGCPSLM  291 (341)
Q Consensus       223 ~~~~~l~~L~~L~l~~c~~l~~-----~~~~-~~~~~~L~~L~l~~~~~l~~-----l~~~l~~l~~L~~L~l~~c~~l~  291 (341)
                      ..+..+++|++|+++++. +..     +... ..+.++|++|++++|. ++.     ++..+..+++|++|++++| .+.
T Consensus       278 ~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~  354 (461)
T 1z7x_W          278 RVLRAKESLKELSLAGNE-LGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLE  354 (461)
T ss_dssp             HHHHHCTTCCEEECTTCC-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCH
T ss_pred             HHHhhCCCcceEECCCCC-CchHHHHHHHHHhccCCccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccc
Confidence            666778899999998864 432     1110 1112489999999875 543     4667778899999999886 454


Q ss_pred             cCCCC-------CCCCCccEEEeecCCCCC----ccccccccCCCceeEEEEeCCCC
Q 019416          292 SFPHG-------GLPPNLISLGIIDCENLI----PLSQWELHKLKHLNKYTILGGLP  337 (341)
Q Consensus       292 ~~~~~-------~~~~~L~~L~l~~c~~~~----~~~~~~i~~~~~L~~l~l~~~C~  337 (341)
                      +....       ...++|++|++++|..-.    ..+. .+.++++|++|++++ |+
T Consensus       355 ~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-~l~~~~~L~~L~l~~-N~  409 (461)
T 1z7x_W          355 DAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-TLLANHSLRELDLSN-NC  409 (461)
T ss_dssp             HHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-HHHHCCCCCEEECCS-SS
T ss_pred             cccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH-HHHhCCCccEEECCC-CC
Confidence            33211       114689999999885443    3333 367789999999998 63

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.46  E-value=4.9e-13  Score=119.34  Aligned_cols=194  Identities=10%  Similarity=0.141  Sum_probs=141.4

Q ss_pred             ccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcc-c
Q 019416           60 ELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKG-L  136 (341)
Q Consensus        60 ~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~  136 (341)
                      ...+++|++|++++| .+..+  +..  +++|++|++++| .+..++....+++|++|++++|. +..    ++.... +
T Consensus        37 ~~~l~~L~~L~l~~~-~i~~l~~~~~--l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~-l~~----~~~~~~l~  107 (308)
T 1h6u_A           37 QADLDGITTLSAFGT-GVTTIEGVQY--LNNLIGLELKDN-QITDLAPLKNLTKITELELSGNP-LKN----VSAIAGLQ  107 (308)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCTTGGG--CTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCC-CSC----CGGGTTCT
T ss_pred             HHHcCCcCEEEeeCC-CccCchhhhc--cCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCc-CCC----chhhcCCC
Confidence            345789999999985 55555  788  999999999986 66666666678999999999986 444    543222 8


Q ss_pred             ccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCc
Q 019416          137 ALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCL  216 (341)
Q Consensus       137 ~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~  216 (341)
                      +|++|+++++ .++.++....+++|+.|+++++. +..++.                     +  ..+++|+.|+++++ 
T Consensus       108 ~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~~~~---------------------l--~~l~~L~~L~l~~n-  161 (308)
T 1h6u_A          108 SIKTLDLTST-QITDVTPLAGLSNLQVLYLDLNQ-ITNISP---------------------L--AGLTNLQYLSIGNA-  161 (308)
T ss_dssp             TCCEEECTTS-CCCCCGGGTTCTTCCEEECCSSC-CCCCGG---------------------G--GGCTTCCEEECCSS-
T ss_pred             CCCEEECCCC-CCCCchhhcCCCCCCEEECCCCc-cCcCcc---------------------c--cCCCCccEEEccCC-
Confidence            9999999885 56666655667889999998763 333321                     1  13446999999986 


Q ss_pred             CCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCC
Q 019416          217 ELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFP  294 (341)
Q Consensus       217 ~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~  294 (341)
                      .+..++. +..+++|+.|+++++. +..++. ...+++|++|+++++ .++.++ .+..+++|+.|+++++ .+...+
T Consensus       162 ~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~-l~~l~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~l~~N-~i~~~~  233 (308)
T 1h6u_A          162 QVSDLTP-LANLSKLTTLKADDNK-ISDISP-LASLPNLIEVHLKNN-QISDVS-PLANTSNLFIVTLTNQ-TITNQP  233 (308)
T ss_dssp             CCCCCGG-GTTCTTCCEEECCSSC-CCCCGG-GGGCTTCCEEECTTS-CCCBCG-GGTTCTTCCEEEEEEE-EEECCC
T ss_pred             cCCCChh-hcCCCCCCEEECCCCc-cCcChh-hcCCCCCCEEEccCC-ccCccc-cccCCCCCCEEEccCC-eeecCC
Confidence            4556654 7788999999999864 454443 223469999999986 577777 4788899999999875 455443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.46  E-value=3e-12  Score=111.95  Aligned_cols=191  Identities=22%  Similarity=0.261  Sum_probs=135.8

Q ss_pred             CcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhh-hcc--cccceEeecCCCCccccCCC--CCccccc
Q 019416           88 SLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMD-QKG--LALESLEVDGCSSLFSLPIN--QLPATLR  162 (341)
Q Consensus        88 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~  162 (341)
                      +.+.+++++ ..+..+|. ..++++++|+++++. +..    ++. .+.  ++|++|++++ +.++.++..  ..+++|+
T Consensus        17 ~~~~l~~~~-~~l~~ip~-~~~~~l~~L~l~~n~-l~~----~~~~~~~~l~~L~~L~l~~-n~l~~i~~~~~~~l~~L~   88 (270)
T 2o6q_A           17 NKNSVDCSS-KKLTAIPS-NIPADTKKLDLQSNK-LSS----LPSKAFHRLTKLRLLYLND-NKLQTLPAGIFKELKNLE   88 (270)
T ss_dssp             TTTEEECTT-SCCSSCCS-CCCTTCSEEECCSSC-CSC----CCTTSSSSCTTCCEEECCS-SCCSCCCTTTTSSCTTCC
T ss_pred             CCCEEEccC-CCCCccCC-CCCCCCCEEECcCCC-CCe----eCHHHhcCCCCCCEEECCC-CccCeeChhhhcCCCCCC
Confidence            467888876 46777775 345789999999986 344    443 333  8999999988 467777764  4568899


Q ss_pred             eEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCC
Q 019416          163 HLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSL  242 (341)
Q Consensus       163 ~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l  242 (341)
                      +|+++++. +..++..              .     +  ..+++|+.|+++++.-....+..+..+++|++|+++++ .+
T Consensus        89 ~L~l~~n~-l~~~~~~--------------~-----~--~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l  145 (270)
T 2o6q_A           89 TLWVTDNK-LQALPIG--------------V-----F--DQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN-EL  145 (270)
T ss_dssp             EEECCSSC-CCCCCTT--------------T-----T--TTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred             EEECCCCc-CCcCCHh--------------H-----c--ccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC-cC
Confidence            99998753 4433320              0     1  13446999999986433333456788899999999986 46


Q ss_pred             ceecCCC-CCCCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCCCC--CCCccEEEeecCC
Q 019416          243 ESFPEGG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHGGL--PPNLISLGIIDCE  311 (341)
Q Consensus       243 ~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~  311 (341)
                      ..++... ..+++|++|+++++ .++.++. .+..+++|++|+++++ .++.++...+  .++|+.|++.+++
T Consensus       146 ~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          146 QSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence            6666543 33579999999986 5777765 4788899999999885 6777776533  5789999998865

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.45  E-value=1.3e-14  Score=136.48  Aligned_cols=130  Identities=15%  Similarity=0.210  Sum_probs=86.4

Q ss_pred             CCCCCCcCeEEcCCCCCCc----cccccccCCCCccEEeccCCCCchhh-----hcccCCC----CcceEeeecCCCCcc
Q 019416           36 IRTGETLESLEIDNLSSLA----SFLRSELAATTVKQLKINKCPDLEVL-----LHRMAYT----SLEYLEFSSCLFFSN  102 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~----~~~~~~~~l~~L~~L~l~~~~~l~~~-----~~~~~l~----~L~~L~l~~~~~l~~  102 (341)
                      +..+++|++|++++|....    .++..+..+++|++|+++++ .+.+.     ...  ++    +|++|++++| .+..
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~--l~~~~~~L~~L~L~~n-~i~~   99 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG--LQTPSCKIQKLSLQNC-CLTG   99 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT--TCSTTCCCCEEECTTS-CCBG
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHHHH--HhhCCCceeEEEccCC-CCCH
Confidence            5678999999999885322    33455667899999999995 55443     444  55    7999999987 4442


Q ss_pred             -----cc-CCCCCCCccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccC-----CC-CCccccceEEee
Q 019416          103 -----SK-QDYFPTTLKRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLP-----IN-QLPATLRHLRIV  167 (341)
Q Consensus       103 -----~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~-----~~-~~~~~L~~L~l~  167 (341)
                           ++ ....+++|++|++++|.........+.....   ++|++|++++| .++...     .. ...++|++|+++
T Consensus       100 ~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~  178 (461)
T 1z7x_W          100 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVS  178 (461)
T ss_dssp             GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECC
T ss_pred             HHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECc
Confidence                 22 2345789999999999843321111222222   57999999986 444322     11 234789999998


Q ss_pred             ccC
Q 019416          168 NCM  170 (341)
Q Consensus       168 ~~~  170 (341)
                      ++.
T Consensus       179 ~n~  181 (461)
T 1z7x_W          179 NND  181 (461)
T ss_dssp             SSB
T ss_pred             CCC
Confidence            864

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.45  E-value=1.9e-14  Score=129.83  Aligned_cols=233  Identities=15%  Similarity=0.190  Sum_probs=145.9

Q ss_pred             CCcCeEEcCCCCCCccccccccCC--CCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCcc--ccC-CCCCCC
Q 019416           40 ETLESLEIDNLSSLASFLRSELAA--TTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSN--SKQ-DYFPTT  111 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~--~~~-~~~~~~  111 (341)
                      ..+++++++++.. .  +..+..+  ++++.|+++++ .+...   +..  +++|++|++++|. +..  ++. ...+++
T Consensus        47 ~~~~~l~l~~~~~-~--~~~~~~~~~~~l~~L~l~~n-~l~~~~~~~~~--~~~L~~L~L~~~~-l~~~~~~~~~~~~~~  119 (336)
T 2ast_B           47 SLWQTLDLTGKNL-H--PDVTGRLLSQGVIAFRCPRS-FMDQPLAEHFS--PFRVQHMDLSNSV-IEVSTLHGILSQCSK  119 (336)
T ss_dssp             TTSSEEECTTCBC-C--HHHHHHHHHTTCSEEECTTC-EECSCCCSCCC--CBCCCEEECTTCE-ECHHHHHHHHTTBCC
T ss_pred             hhheeeccccccC-C--HHHHHhhhhccceEEEcCCc-cccccchhhcc--CCCCCEEEccCCC-cCHHHHHHHHhhCCC
Confidence            3478889887532 2  2334444  78899998884 44444   455  8889999998864 332  332 345788


Q ss_pred             ccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccc--cCCC-CCccccceEEeeccCCccc--cCcceeeeCC
Q 019416          112 LKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFS--LPIN-QLPATLRHLRIVNCMNLKS--LGESSKIRNC  184 (341)
Q Consensus       112 L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~--l~~~-~~~~~L~~L~l~~~~~l~~--~~~~l~l~~~  184 (341)
                      |++|++++|.....    .+..+.  ++|++|++++|..++.  ++.. ..+++|++|++++|..+..  ++..      
T Consensus       120 L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~------  189 (336)
T 2ast_B          120 LQNLSLEGLRLSDP----IVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA------  189 (336)
T ss_dssp             CSEEECTTCBCCHH----HHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHH------
T ss_pred             CCEEeCcCcccCHH----HHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHH------
Confidence            99999998875444    444444  8899999988766653  3322 3457888888888754442  1110      


Q ss_pred             CCCCcCCCccccccccccccc-ccceEeeccCc-CC--CcccccCCCCCCcCeEEeecCCCCc-eecCCCCCCCCcceEe
Q 019416          185 DSVVGPEGESSLENMTSSHTL-ELRELEIWDCL-EL--EFLPEDMHNFTDLNLLSISNCPSLE-SFPEGGLPNTSLTSLL  259 (341)
Q Consensus       185 ~~l~~~~~~~~~~~l~~~~~~-~L~~L~l~~~~-~l--~~l~~~~~~l~~L~~L~l~~c~~l~-~~~~~~~~~~~L~~L~  259 (341)
                                    +  ..++ +|++|++++|. .+  ..++..+..+++|+.|++++|..++ ..+.....+++|++|+
T Consensus       190 --------------~--~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~  253 (336)
T 2ast_B          190 --------------V--AHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS  253 (336)
T ss_dssp             --------------H--HHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEE
T ss_pred             --------------H--HhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEee
Confidence                          1  1344 58888888874 33  3345566677888999888876443 2222223346888888


Q ss_pred             cccCcccccc-hhhhccCCCcCeEeecCCCCCccCCCCC---CCCCccEEEeecC
Q 019416          260 ISECENLMSL-PHQIHKATSLQDLSVSGCPSLMSFPHGG---LPPNLISLGIIDC  310 (341)
Q Consensus       260 l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~c  310 (341)
                      +++|..+..- ...+..+++|+.|++++|     ++..+   +..+++.|++.++
T Consensus       254 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-----i~~~~~~~l~~~l~~L~l~~n  303 (336)
T 2ast_B          254 LSRCYDIIPETLLELGEIPTLKTLQVFGI-----VPDGTLQLLKEALPHLQINCS  303 (336)
T ss_dssp             CTTCTTCCGGGGGGGGGCTTCCEEECTTS-----SCTTCHHHHHHHSTTSEESCC
T ss_pred             CCCCCCCCHHHHHHHhcCCCCCEEeccCc-----cCHHHHHHHHhhCcceEEecc
Confidence            8887533211 124677888888888887     33322   2234666667443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.45  E-value=4.9e-13  Score=117.13  Aligned_cols=201  Identities=17%  Similarity=0.134  Sum_probs=122.5

Q ss_pred             CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccC--CCCCC
Q 019416           35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPT  110 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~  110 (341)
                      ....+++|+.|+++++. ++.++ .+..+++|++|++++| .+..+  +..  +++|++|++++| .+..++.  ...++
T Consensus        36 ~~~~l~~L~~L~l~~~~-i~~~~-~l~~l~~L~~L~l~~n-~l~~~~~l~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~  109 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSD-IKSVQ-GIQYLPNVRYLALGGN-KLHDISALKE--LTNLTYLILTGN-QLQSLPNGVFDKLT  109 (272)
T ss_dssp             CHHHHTTCCEEECTTSC-CCCCT-TGGGCTTCCEEECTTS-CCCCCGGGTT--CTTCCEEECTTS-CCCCCCTTTTTTCT
T ss_pred             ccccccceeeeeeCCCC-ccccc-ccccCCCCcEEECCCC-CCCCchhhcC--CCCCCEEECCCC-ccCccChhHhcCCc
Confidence            34568889999998763 44443 3667889999999884 45555  777  888999999876 5655554  34478


Q ss_pred             CccEEEEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCC
Q 019416          111 TLKRLKICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCD  185 (341)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~  185 (341)
                      +|++|++++|.. ..    ++.. +.  ++|++|+++++ .++.++..  ..+++|+.|+++++. +..++...      
T Consensus       110 ~L~~L~L~~n~l-~~----~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~------  176 (272)
T 3rfs_A          110 NLKELVLVENQL-QS----LPDGVFDKLTNLTYLNLAHN-QLQSLPKGVFDKLTNLTELDLSYNQ-LQSLPEGV------  176 (272)
T ss_dssp             TCCEEECTTSCC-CC----CCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT------
T ss_pred             CCCEEECCCCcC-Cc----cCHHHhccCCCCCEEECCCC-ccCccCHHHhccCccCCEEECCCCC-cCccCHHH------
Confidence            888888888763 33    3332 22  77888888774 56666543  345677777777652 33222100      


Q ss_pred             CCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcc
Q 019416          186 SVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECEN  265 (341)
Q Consensus       186 ~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~  265 (341)
                                   +  ..+++|+.|+++++.-....+..+..+++|+.|++++++-..       .+++|+.++++.+..
T Consensus       177 -------------~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~  234 (272)
T 3rfs_A          177 -------------F--DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKH  234 (272)
T ss_dssp             -------------T--TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHT
T ss_pred             -------------h--cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhC
Confidence                         1  123357777777754333333445667777777777654211       123666666665433


Q ss_pred             cccchhhhccC
Q 019416          266 LMSLPHQIHKA  276 (341)
Q Consensus       266 l~~l~~~l~~l  276 (341)
                      ...+|..+..+
T Consensus       235 ~g~ip~~~~~~  245 (272)
T 3rfs_A          235 SGVVRNSAGSV  245 (272)
T ss_dssp             GGGBBCTTSCB
T ss_pred             CCcccCccccc
Confidence            33455544443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.44  E-value=1.2e-12  Score=114.78  Aligned_cols=191  Identities=17%  Similarity=0.240  Sum_probs=101.1

Q ss_pred             CCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCCc
Q 019416           40 ETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTTL  112 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L  112 (341)
                      ++|++|+++++ .++.++. .+..+++|++|++++| .+..+    +..  +++|++|+++++ .+..++.  ...+++|
T Consensus        28 ~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~--l~~L~~L~L~~n-~l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQS--LSHLSTLILTGN-PIQSLALGAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTT--CTTCCEEECTTC-CCCEECTTTTTTCTTC
T ss_pred             CCccEEECCCC-cccccCHhHhccccCCcEEECCCC-cCCccCHHHccC--CcCCCEEECCCC-ccCccChhhhcCCccc
Confidence            45777888765 4455443 4666777777777774 44333    556  677777777764 4443332  2335666


Q ss_pred             cEEEEeCCCChHHHHHHhhh-hcccccceEeecCCCCccccCCCCCccccceEEeeccCCccc--cCcceeeeCCCCCCc
Q 019416          113 KRLKICDCTNAELILKVLMD-QKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKS--LGESSKIRNCDSVVG  189 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~--~~~~l~l~~~~~l~~  189 (341)
                      ++|++++|....     ++. .+                     ..+++|+.|+++++. +..  +|..           
T Consensus       103 ~~L~l~~n~l~~-----~~~~~~---------------------~~l~~L~~L~l~~n~-l~~~~l~~~-----------  144 (276)
T 2z62_A          103 QKLVAVETNLAS-----LENFPI---------------------GHLKTLKELNVAHNL-IQSFKLPEY-----------  144 (276)
T ss_dssp             CEEECTTSCCCC-----STTCCC---------------------TTCTTCCEEECCSSC-CCCCCCCGG-----------
T ss_pred             cEEECCCCCccc-----cCchhc---------------------ccCCCCCEEECcCCc-cceecCchh-----------
Confidence            666666654211     111 11                     223445555554431 111  1110           


Q ss_pred             CCCcccccccccccccccceEeeccCcCCCcc-cccCCCCCCcC----eEEeecCCCCceecCCCCCCCCcceEecccCc
Q 019416          190 PEGESSLENMTSSHTLELRELEIWDCLELEFL-PEDMHNFTDLN----LLSISNCPSLESFPEGGLPNTSLTSLLISECE  264 (341)
Q Consensus       190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~----~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~  264 (341)
                               +.  .+++|+.|+++++. +..+ +..+..++.|+    .|+++++ .+..++...+...+|++|+++++ 
T Consensus       145 ---------~~--~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n-  210 (276)
T 2z62_A          145 ---------FS--NLTNLEHLDLSSNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTN-  210 (276)
T ss_dssp             ---------GG--GCTTCCEEECCSSC-CCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSS-
T ss_pred             ---------hc--cCCCCCEEECCCCC-CCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCC-
Confidence                     00  22346666666643 2222 23344344444    6677664 35555555444457777777775 


Q ss_pred             ccccchhh-hccCCCcCeEeecCC
Q 019416          265 NLMSLPHQ-IHKATSLQDLSVSGC  287 (341)
Q Consensus       265 ~l~~l~~~-l~~l~~L~~L~l~~c  287 (341)
                      .++.+|.. +..+++|+.|+++++
T Consensus       211 ~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          211 QLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             ceeecCHhHhcccccccEEEccCC
Confidence            46666543 466777777777764

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.44  E-value=1.3e-14  Score=130.81  Aligned_cols=196  Identities=16%  Similarity=0.205  Sum_probs=127.9

Q ss_pred             CCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchh--h---hcccCCCCcceEeeecCCCCcccc-CCCCCCCcc
Q 019416           40 ETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEV--L---LHRMAYTSLEYLEFSSCLFFSNSK-QDYFPTTLK  113 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~--~---~~~~~l~~L~~L~l~~~~~l~~~~-~~~~~~~L~  113 (341)
                      ++++.|++.++ .+...+.....+++|++|++++|. +..  +   +..  +++|++|++++|......+ ....+++|+
T Consensus        70 ~~l~~L~l~~n-~l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~--~~~L~~L~L~~~~l~~~~~~~l~~~~~L~  145 (336)
T 2ast_B           70 QGVIAFRCPRS-FMDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQ--CSKLQNLSLEGLRLSDPIVNTLAKNSNLV  145 (336)
T ss_dssp             TTCSEEECTTC-EECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTT--BCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred             ccceEEEcCCc-cccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhh--CCCCCEEeCcCcccCHHHHHHHhcCCCCC
Confidence            78899999875 444544556678999999999864 432  2   778  8999999998874222222 234478899


Q ss_pred             EEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccc--cCCC-CCcc-ccceEEeeccC-Ccc--ccCcceeeeCC
Q 019416          114 RLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFS--LPIN-QLPA-TLRHLRIVNCM-NLK--SLGESSKIRNC  184 (341)
Q Consensus       114 ~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~--l~~~-~~~~-~L~~L~l~~~~-~l~--~~~~~l~l~~~  184 (341)
                      +|++++|..+...  .++..+.  ++|++|++++|..++.  ++.. ..++ +|++|+++++. .+.  .++..      
T Consensus       146 ~L~L~~~~~l~~~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~------  217 (336)
T 2ast_B          146 RLNLSGCSGFSEF--ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTL------  217 (336)
T ss_dssp             EEECTTCBSCCHH--HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHH------
T ss_pred             EEECCCCCCCCHH--HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHH------
Confidence            9999998544420  0344333  8899999988756654  2222 3456 89999998874 232  11110      


Q ss_pred             CCCCcCCCcccccccccccccccceEeeccCcCCC-cccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEeccc
Q 019416          185 DSVVGPEGESSLENMTSSHTLELRELEIWDCLELE-FLPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISE  262 (341)
Q Consensus       185 ~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~  262 (341)
                                    +  ..+++|+.|++++|..++ ..+..+..+++|+.|++++|..+..... ....+++|++|++++
T Consensus       218 --------------~--~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~  281 (336)
T 2ast_B          218 --------------V--RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFG  281 (336)
T ss_dssp             --------------H--HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred             --------------H--hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccC
Confidence                          0  134569999999887443 4456777888999999998864322110 112246899999998


Q ss_pred             C
Q 019416          263 C  263 (341)
Q Consensus       263 ~  263 (341)
                      |
T Consensus       282 ~  282 (336)
T 2ast_B          282 I  282 (336)
T ss_dssp             S
T ss_pred             c
Confidence            7

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.43  E-value=5.3e-14  Score=136.59  Aligned_cols=282  Identities=20%  Similarity=0.159  Sum_probs=146.1

Q ss_pred             CCCCcCeEEcCCCCCCcc--ccccccCCCCccEEeccCCCCchh-----h---hcccCCCCcceEeeecCC-CCc--ccc
Q 019416           38 TGETLESLEIDNLSSLAS--FLRSELAATTVKQLKINKCPDLEV-----L---LHRMAYTSLEYLEFSSCL-FFS--NSK  104 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~l~~-----~---~~~~~l~~L~~L~l~~~~-~l~--~~~  104 (341)
                      .+++|++|++++|..++.  ++.....+++|++|++++|. +.+     +   ...  +++|++|++++|. .+.  .+.
T Consensus       128 ~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~--~~~L~~L~l~~~~~~~~~~~l~  204 (594)
T 2p1m_B          128 SFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDT--YTSLVSLNISCLASEVSFSALE  204 (594)
T ss_dssp             HCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTT--CCCCCEEECTTCCSCCCHHHHH
T ss_pred             hCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhc--CCcCcEEEecccCCcCCHHHHH
Confidence            578999999998865544  33333468899999998864 322     1   345  7789999988764 111  111


Q ss_pred             C-CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCC-------------------CCcccc----------
Q 019416          105 Q-DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGC-------------------SSLFSL----------  152 (341)
Q Consensus       105 ~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~-------------------~~l~~l----------  152 (341)
                      . ...+++|++|++++|..+..    ++..+.  ++|++|++..+                   +.++.+          
T Consensus       205 ~l~~~~~~L~~L~L~~~~~~~~----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~  280 (594)
T 2p1m_B          205 RLVTRCPNLKSLKLNRAVPLEK----LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAY  280 (594)
T ss_dssp             HHHHHCTTCCEEECCTTSCHHH----HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGG
T ss_pred             HHHHhCCCCcEEecCCCCcHHH----HHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhh
Confidence            1 11258888888888866655    444443  66666654332                   222211          


Q ss_pred             -CCC-CCccccceEEeeccCCcccc---------Cc--ceeeeCCCCCCcCCCcccccccccccccccceEeec------
Q 019416          153 -PIN-QLPATLRHLRIVNCMNLKSL---------GE--SSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIW------  213 (341)
Q Consensus       153 -~~~-~~~~~L~~L~l~~~~~l~~~---------~~--~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~------  213 (341)
                       +.. ..+++|++|++++|. +...         +.  .+.+++|  ..+    .++..+. ..+++|++|+++      
T Consensus       281 l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~----~~l~~l~-~~~~~L~~L~L~~~~~~g  352 (594)
T 2p1m_B          281 LPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IED----AGLEVLA-STCKDLRELRVFPSEPFV  352 (594)
T ss_dssp             GGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH----HHHHHHH-HHCTTCCEEEEECSCTTC
T ss_pred             HHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCH----HHHHHHH-HhCCCCCEEEEecCcccc
Confidence             000 123566666666554 2210         00  2222222  000    0000000 012334444442      


Q ss_pred             ---------------------------cCcCCCcc-cccC-CCCCCcCeEEee-----cCCCCceecCC------CCCCC
Q 019416          214 ---------------------------DCLELEFL-PEDM-HNFTDLNLLSIS-----NCPSLESFPEG------GLPNT  253 (341)
Q Consensus       214 ---------------------------~~~~l~~l-~~~~-~~l~~L~~L~l~-----~c~~l~~~~~~------~~~~~  253 (341)
                                                 +|..+... +..+ ..+++|+.|+++     +|..++..+..      ...++
T Consensus       353 ~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~  432 (594)
T 2p1m_B          353 MEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCK  432 (594)
T ss_dssp             SSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCT
T ss_pred             cccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCC
Confidence                                       22222211 1111 235677777777     44555433210      11134


Q ss_pred             CcceEecccCccccc-chhhhc-cCCCcCeEeecCCCCCccCCCC---CCCCCccEEEeecCCCCCccccccccCCCcee
Q 019416          254 SLTSLLISECENLMS-LPHQIH-KATSLQDLSVSGCPSLMSFPHG---GLPPNLISLGIIDCENLIPLSQWELHKLKHLN  328 (341)
Q Consensus       254 ~L~~L~l~~~~~l~~-l~~~l~-~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~  328 (341)
                      +|++|++++  .++. ....+. .+++|+.|++++|. +......   ...++|++|++++|..........+..+++|+
T Consensus       433 ~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~  509 (594)
T 2p1m_B          433 DLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMR  509 (594)
T ss_dssp             TCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSS
T ss_pred             CccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCC
Confidence            777777765  2332 122332 37788888887764 3222111   12578999999998763322221245678999


Q ss_pred             EEEEeCCCCC
Q 019416          329 KYTILGGLPV  338 (341)
Q Consensus       329 ~l~l~~~C~~  338 (341)
                      +|++++ |+.
T Consensus       510 ~L~l~~-~~~  518 (594)
T 2p1m_B          510 SLWMSS-CSV  518 (594)
T ss_dssp             EEEEES-SCC
T ss_pred             EEeeeC-CCC
Confidence            999998 864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.43  E-value=1.2e-11  Score=110.41  Aligned_cols=214  Identities=15%  Similarity=0.102  Sum_probs=114.4

Q ss_pred             CCccEEeccCCCCchh----h--hcccCCCCcceEeeecCCCCccccCC---CCCCCccEEEEeCCCChHHHHHHhh---
Q 019416           64 TTVKQLKINKCPDLEV----L--LHRMAYTSLEYLEFSSCLFFSNSKQD---YFPTTLKRLKICDCTNAELILKVLM---  131 (341)
Q Consensus        64 ~~L~~L~l~~~~~l~~----~--~~~~~l~~L~~L~l~~~~~l~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~---  131 (341)
                      ..++.+.+.++..-..    +  .-.  +++|++|++++|......+..   ..+++|++|++++|.....    .+   
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~--~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~----~~~~~  137 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLA--YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATG----RSWLA  137 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHH--HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSST----TSSHH
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcc--cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccch----hhhhH
Confidence            5577888877542211    1  334  667999999887444444443   4578899999998874332    11   


Q ss_pred             -hhc-c-cccceEeecCCCCccccCCC--CCccccceEEeeccCCccc--cCcceeeeCCCCCCcCCCcccccccccccc
Q 019416          132 -DQK-G-LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKS--LGESSKIRNCDSVVGPEGESSLENMTSSHT  204 (341)
Q Consensus       132 -~~~-~-~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~--~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~  204 (341)
                       ... . ++|++|+++++ .+..++..  ..+++|++|+++++.-...  ++...                   . ...+
T Consensus       138 ~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-------------------~-~~~l  196 (310)
T 4glp_A          138 ELQQWLKPGLKVLSIAQA-HSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAAL-------------------C-PHKF  196 (310)
T ss_dssp             HHHTTBCSCCCEEEEECC-SSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTS-------------------C-TTSS
T ss_pred             HHHhhhccCCCEEEeeCC-CcchhhHHHhccCCCCCEEECCCCCCccchhhhHHH-------------------h-hhcC
Confidence             111 1 78888888774 45555433  3556777777776532110  10000                   0 0123


Q ss_pred             cccceEeeccCcCCCcccc----cCCCCCCcCeEEeecCCCCcee-cCCCCCC---CCcceEecccCcccccchhhhccC
Q 019416          205 LELRELEIWDCLELEFLPE----DMHNFTDLNLLSISNCPSLESF-PEGGLPN---TSLTSLLISECENLMSLPHQIHKA  276 (341)
Q Consensus       205 ~~L~~L~l~~~~~l~~l~~----~~~~l~~L~~L~l~~c~~l~~~-~~~~~~~---~~L~~L~l~~~~~l~~l~~~l~~l  276 (341)
                      ++|+.|++++|. ++.++.    .+..+++|++|+++++. +... |.....+   ++|++|+++++ .++.+|..+.  
T Consensus       197 ~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--  271 (310)
T 4glp_A          197 PAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--  271 (310)
T ss_dssp             CCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--
T ss_pred             CCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--
Confidence            357777776653 333332    13445667777776653 3332 3222111   46666666664 4556655442  


Q ss_pred             CCcCeEeecCCCCCccCCCCCCCCCccEEEeecC
Q 019416          277 TSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDC  310 (341)
Q Consensus       277 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c  310 (341)
                      ++|+.|+++++ .++.++.-..+++|++|+++++
T Consensus       272 ~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          272 AKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGN  304 (310)
T ss_dssp             SCCSCEECCSC-CCCSCCCTTSCCCCSCEECSST
T ss_pred             CCCCEEECCCC-cCCCCchhhhCCCccEEECcCC
Confidence            56666666553 4554443333456666666554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.42  E-value=6.1e-14  Score=136.14  Aligned_cols=131  Identities=16%  Similarity=0.115  Sum_probs=68.4

Q ss_pred             ccccceEeeccCcCCCc--ccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEeccc----------Cccccc--c
Q 019416          204 TLELRELEIWDCLELEF--LPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISE----------CENLMS--L  269 (341)
Q Consensus       204 ~~~L~~L~l~~~~~l~~--l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~----------~~~l~~--l  269 (341)
                      +++|++|++++|. +..  ++..+..+++|+.|+++++-.-..++.....+++|++|++++          |+.++.  +
T Consensus       292 ~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~  370 (592)
T 3ogk_B          292 AAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGL  370 (592)
T ss_dssp             GGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHH
T ss_pred             cCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHH
Confidence            4457777777665 221  122345566777777763211111111111124777777774          555542  2


Q ss_pred             hhhhccCCCcCeEeecCCCCCccCCCC---CCCCCccEEEeec---CCCCCcc-----ccccccCCCceeEEEEeCCCC
Q 019416          270 PHQIHKATSLQDLSVSGCPSLMSFPHG---GLPPNLISLGIID---CENLIPL-----SQWELHKLKHLNKYTILGGLP  337 (341)
Q Consensus       270 ~~~l~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~L~l~~---c~~~~~~-----~~~~i~~~~~L~~l~l~~~C~  337 (341)
                      +.....+++|++|++ +|+.+......   ...++|++|++.+   |+.++..     ....+..+++|++|+++. |.
T Consensus       371 ~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~-~~  447 (592)
T 3ogk_B          371 IALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL-RQ  447 (592)
T ss_dssp             HHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEEC-CG
T ss_pred             HHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEec-CC
Confidence            333455777777777 34555322111   1156788888874   4455531     111145678888888877 65

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.41  E-value=9.3e-12  Score=108.78  Aligned_cols=115  Identities=21%  Similarity=0.212  Sum_probs=64.4

Q ss_pred             CcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CCCCCccE
Q 019416           41 TLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTTLKR  114 (341)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~  114 (341)
                      ..+++++++ ..++.+|..+.  ++|++|+++++ .+..+    +..  +++|++|+++++ .+..++..  ..+++|++
T Consensus        17 ~~~~l~~~~-~~l~~ip~~~~--~~l~~L~l~~n-~l~~~~~~~~~~--l~~L~~L~l~~n-~l~~i~~~~~~~l~~L~~   89 (270)
T 2o6q_A           17 NKNSVDCSS-KKLTAIPSNIP--ADTKKLDLQSN-KLSSLPSKAFHR--LTKLRLLYLNDN-KLQTLPAGIFKELKNLET   89 (270)
T ss_dssp             TTTEEECTT-SCCSSCCSCCC--TTCSEEECCSS-CCSCCCTTSSSS--CTTCCEEECCSS-CCSCCCTTTTSSCTTCCE
T ss_pred             CCCEEEccC-CCCCccCCCCC--CCCCEEECcCC-CCCeeCHHHhcC--CCCCCEEECCCC-ccCeeChhhhcCCCCCCE
Confidence            466777776 35566665332  57888888774 44444    666  778888888764 55555542  23677777


Q ss_pred             EEEeCCCChHHHHHHhhhhc-c--cccceEeecCCCCccccCCC--CCccccceEEeec
Q 019416          115 LKICDCTNAELILKVLMDQK-G--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVN  168 (341)
Q Consensus       115 L~l~~~~~~~~~~~~~~~~~-~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~  168 (341)
                      |+++++. +..    ++... .  ++|++|++++ +.++.++..  ..+++|++|++++
T Consensus        90 L~l~~n~-l~~----~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~  142 (270)
T 2o6q_A           90 LWVTDNK-LQA----LPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGY  142 (270)
T ss_dssp             EECCSSC-CCC----CCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             EECCCCc-CCc----CCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEECCC
Confidence            7777765 222    33221 1  5566666655 234443332  2334444444444

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.41  E-value=1.2e-12  Score=117.00  Aligned_cols=191  Identities=18%  Similarity=0.173  Sum_probs=100.6

Q ss_pred             CCCCccEEeccCCCCchhh----h--cccCCCCcceEeeecCCCCccccCC-C-----CCCCccEEEEeCCCChHHHHHH
Q 019416           62 AATTVKQLKINKCPDLEVL----L--HRMAYTSLEYLEFSSCLFFSNSKQD-Y-----FPTTLKRLKICDCTNAELILKV  129 (341)
Q Consensus        62 ~l~~L~~L~l~~~~~l~~~----~--~~~~l~~L~~L~l~~~~~l~~~~~~-~-----~~~~L~~L~l~~~~~~~~~~~~  129 (341)
                      .+++|++|++++| .+...    +  ..  +++|++|+++++ .+...|.. .     .+++|++|++++|.....    
T Consensus        93 ~l~~L~~L~L~~n-~l~~~~~~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~----  164 (312)
T 1wwl_A           93 GISGLQELTLENL-EVTGTAPPPLLEAT--GPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNF----  164 (312)
T ss_dssp             TTSCCCEEEEEEE-BCBSCCCCCSSSCC--SCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCC----
T ss_pred             CcCCccEEEccCC-cccchhHHHHHHhc--CCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCCCCccc----
Confidence            4566666666663 33321    2  55  666666666664 33333320 1     126666666666653222    


Q ss_pred             hhhhcc--cccceEeecCCCCcccc--C-CC--CCccccceEEeeccCCccccCcceeeeCCCCCCcCCCccccccccc-
Q 019416          130 LMDQKG--LALESLEVDGCSSLFSL--P-IN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTS-  201 (341)
Q Consensus       130 ~~~~~~--~~L~~L~l~~~~~l~~l--~-~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~-  201 (341)
                      .+..++  ++|++|+++++.....+  + ..  ..+++|+.|+++++. +..++.                     ++. 
T Consensus       165 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~---------------------~~~~  222 (312)
T 1wwl_A          165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAG-METPSG---------------------VCSA  222 (312)
T ss_dssp             CTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHH---------------------HHHH
T ss_pred             hHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCc-CcchHH---------------------HHHH
Confidence            223333  66666666664322211  1 11  334566666666642 221111                     000 


Q ss_pred             --ccccccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCC
Q 019416          202 --SHTLELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATS  278 (341)
Q Consensus       202 --~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~  278 (341)
                        ..+++|+.|+++++.-....| ..+..+++|+.|++++|. ++.+|....  ++|++|+++++ .++.+|. +..+++
T Consensus       223 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~--~~L~~L~Ls~N-~l~~~p~-~~~l~~  297 (312)
T 1wwl_A          223 LAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP--AKLSVLDLSYN-RLDRNPS-PDELPQ  297 (312)
T ss_dssp             HHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC--SEEEEEECCSS-CCCSCCC-TTTSCE
T ss_pred             HHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCc-cChhhhhcc--CCceEEECCCC-CCCCChh-HhhCCC
Confidence              022357777777754322222 334456777777777753 555554333  57777777774 5766664 667777


Q ss_pred             cCeEeecCC
Q 019416          279 LQDLSVSGC  287 (341)
Q Consensus       279 L~~L~l~~c  287 (341)
                      |++|+++++
T Consensus       298 L~~L~L~~N  306 (312)
T 1wwl_A          298 VGNLSLKGN  306 (312)
T ss_dssp             EEEEECTTC
T ss_pred             CCEEeccCC
Confidence            777777763

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.38  E-value=9.4e-12  Score=109.01  Aligned_cols=193  Identities=23%  Similarity=0.219  Sum_probs=108.8

Q ss_pred             CCCcceEeeecCCCCccccC--CCCCCCccEEEEeCCCChHHHHHHhhh-hcc--cccceEeecCCCCccccCCC--CCc
Q 019416           86 YTSLEYLEFSSCLFFSNSKQ--DYFPTTLKRLKICDCTNAELILKVLMD-QKG--LALESLEVDGCSSLFSLPIN--QLP  158 (341)
Q Consensus        86 l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~--~~L~~L~l~~~~~l~~l~~~--~~~  158 (341)
                      .++|++|+++++ .+..++.  ...+++|++|++++|.. ..    ++. .+.  ++|++|+++++ .++.++..  ..+
T Consensus        27 ~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~l-~~----~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l   99 (276)
T 2z62_A           27 PFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCEI-QT----IEDGAYQSLSHLSTLILTGN-PIQSLALGAFSGL   99 (276)
T ss_dssp             CTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCCC-CE----ECTTTTTTCTTCCEEECTTC-CCCEECTTTTTTC
T ss_pred             CCCccEEECCCC-cccccCHhHhccccCCcEEECCCCcC-Cc----cCHHHccCCcCCCEEECCCC-ccCccChhhhcCC
Confidence            346888888775 5555543  33467788888887753 33    332 222  77778887763 45555432  445


Q ss_pred             cccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCC-cccccCCCCCCcCeEEee
Q 019416          159 ATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELE-FLPEDMHNFTDLNLLSIS  237 (341)
Q Consensus       159 ~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~L~~L~l~  237 (341)
                      ++|+.|+++++. +..++.                     .+...+++|+.|+++++.... .+|..+..+++|++|+++
T Consensus       100 ~~L~~L~l~~n~-l~~~~~---------------------~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls  157 (276)
T 2z62_A          100 SSLQKLVAVETN-LASLEN---------------------FPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  157 (276)
T ss_dssp             TTCCEEECTTSC-CCCSTT---------------------CCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             ccccEEECCCCC-ccccCc---------------------hhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECC
Confidence            677777776642 222211                     000133357777777754322 246667777777777777


Q ss_pred             cCCCCceecCCCC-CCCCcc----eEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCC--CCCCccEEEeecC
Q 019416          238 NCPSLESFPEGGL-PNTSLT----SLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGG--LPPNLISLGIIDC  310 (341)
Q Consensus       238 ~c~~l~~~~~~~~-~~~~L~----~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c  310 (341)
                      +|. ++.++...+ .+++|+    +|+++++ .++.++.......+|+.|+++++ .++.++...  ..++|++|+++++
T Consensus       158 ~N~-l~~~~~~~~~~l~~L~~l~l~L~ls~n-~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N  234 (276)
T 2z62_A          158 SNK-IQSIYCTDLRVLHQMPLLNLSLDLSLN-PMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTN  234 (276)
T ss_dssp             SSC-CCEECGGGGHHHHTCTTCCEEEECCSS-CCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSS
T ss_pred             CCC-CCcCCHHHhhhhhhccccceeeecCCC-cccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCC
Confidence            753 444433211 123444    6667664 46666554444456777777664 466665542  2567777777743

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.36  E-value=5.5e-12  Score=112.51  Aligned_cols=221  Identities=17%  Similarity=0.205  Sum_probs=141.5

Q ss_pred             CCCcCeEEcCCCCCCcc-ccc--cccCCCCccEEeccCCCCchhh----h--cccCCCCcceEeeecCCCCccccC----
Q 019416           39 GETLESLEIDNLSSLAS-FLR--SELAATTVKQLKINKCPDLEVL----L--HRMAYTSLEYLEFSSCLFFSNSKQ----  105 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~-~~~--~~~~l~~L~~L~l~~~~~l~~~----~--~~~~l~~L~~L~l~~~~~l~~~~~----  105 (341)
                      ...++.+.+.++..... +..  ....+++|++|++++|. +...    +  ..  +++|++|++++|......+.    
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~--~~~L~~L~Ls~n~i~~~~~~~~~~  139 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEAT--GLALSSLRLRNVSWATGRSWLAEL  139 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCC--CBCCSSCEEESCCCSSTTSSHHHH
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhcc--CCCCCEEEeecccccchhhhhHHH
Confidence            34577888877543211 110  12234679999998853 4333    3  67  88999999988643332221    


Q ss_pred             -CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccc--cCCC---CCccccceEEeeccCCccccCc
Q 019416          106 -DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFS--LPIN---QLPATLRHLRIVNCMNLKSLGE  177 (341)
Q Consensus       106 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~--l~~~---~~~~~L~~L~l~~~~~l~~~~~  177 (341)
                       ...+++|++|++++|.....    .+..+.  ++|++|+++++.....  ++..   ..+++|++|+++++. ++.++.
T Consensus       140 ~~~~~~~L~~L~Ls~n~l~~~----~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~  214 (310)
T 4glp_A          140 QQWLKPGLKVLSIAQAHSPAF----SCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTG  214 (310)
T ss_dssp             HTTBCSCCCEEEEECCSSCCC----CTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHH
T ss_pred             HhhhccCCCEEEeeCCCcchh----hHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHH
Confidence             12378899999998874333    334443  8899999988643321  2211   356789999998863 433221


Q ss_pred             ceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCC---CCcCeEEeecCCCCceecCCCCCCCC
Q 019416          178 SSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNF---TDLNLLSISNCPSLESFPEGGLPNTS  254 (341)
Q Consensus       178 ~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l---~~L~~L~l~~c~~l~~~~~~~~~~~~  254 (341)
                      ..              ..   + ...+++|+.|+++++.-....|..+..+   ++|++|++++| .++.+|....  ++
T Consensus       215 ~~--------------~~---l-~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~--~~  273 (310)
T 4glp_A          215 VC--------------AA---L-AAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLP--AK  273 (310)
T ss_dssp             HH--------------HH---H-HHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCC--SC
T ss_pred             HH--------------HH---H-HhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhc--CC
Confidence            00              00   0 0133479999999975444447666665   69999999996 4666766543  69


Q ss_pred             cceEecccCcccccchhhhccCCCcCeEeecCCCCCc
Q 019416          255 LTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLM  291 (341)
Q Consensus       255 L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~  291 (341)
                      |++|+++++ .++.+|. +..+++|+.|+++++ .+.
T Consensus       274 L~~L~Ls~N-~l~~~~~-~~~l~~L~~L~L~~N-~l~  307 (310)
T 4glp_A          274 LRVLDLSSN-RLNRAPQ-PDELPEVDNLTLDGN-PFL  307 (310)
T ss_dssp             CSCEECCSC-CCCSCCC-TTSCCCCSCEECSST-TTS
T ss_pred             CCEEECCCC-cCCCCch-hhhCCCccEEECcCC-CCC
Confidence            999999996 5888764 678899999999874 443

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.36  E-value=3.5e-13  Score=124.07  Aligned_cols=231  Identities=16%  Similarity=0.144  Sum_probs=137.0

Q ss_pred             cCCCCCCCcCeEEcCCCCCCcc----ccccccCCCCccEEeccCC--CCchh-----h------hcccCCCCcceEeeec
Q 019416           34 LGIRTGETLESLEIDNLSSLAS----FLRSELAATTVKQLKINKC--PDLEV-----L------LHRMAYTSLEYLEFSS   96 (341)
Q Consensus        34 ~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~--~~l~~-----~------~~~~~l~~L~~L~l~~   96 (341)
                      ..+..+++|++|++++|.....    ++..+..+++|++|++++|  +.+..     +      +..  +++|++|++++
T Consensus        26 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~--~~~L~~L~Ls~  103 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK--CPKLHTVRLSD  103 (386)
T ss_dssp             HHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT--CTTCCEEECCS
T ss_pred             HHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhh--CCcccEEECCC
Confidence            3455688999999998743322    2233567899999999986  23321     1      467  89999999998


Q ss_pred             CCCCcc-----ccC-CCCCCCccEEEEeCCCChHHHHHHhhhhcc-----------cccceEeecCCCCcc--ccCC---
Q 019416           97 CLFFSN-----SKQ-DYFPTTLKRLKICDCTNAELILKVLMDQKG-----------LALESLEVDGCSSLF--SLPI---  154 (341)
Q Consensus        97 ~~~l~~-----~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-----------~~L~~L~l~~~~~l~--~l~~---  154 (341)
                      | .+..     ++. ...+++|++|++++|.........++..+.           ++|++|++++| .++  .++.   
T Consensus       104 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~  181 (386)
T 2ca6_A          104 N-AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAK  181 (386)
T ss_dssp             C-CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHH
T ss_pred             C-cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHH
Confidence            6 4433     221 234789999999998753221111222211           48888888875 343  2221   


Q ss_pred             C-CCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCC----CcccccCCCCC
Q 019416          155 N-QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLEL----EFLPEDMHNFT  229 (341)
Q Consensus       155 ~-~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l----~~l~~~~~~l~  229 (341)
                      . ...++|++|+++++. +........+        +   .+   +.  .+++|+.|+++++...    ..+|..+..++
T Consensus       182 ~l~~~~~L~~L~L~~n~-l~~~g~~~l~--------~---~~---l~--~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~  244 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNG-IRPEGIEHLL--------L---EG---LA--YCQELKVLDLQDNTFTHLGSSALAIALKSWP  244 (386)
T ss_dssp             HHHHCTTCCEEECCSSC-CCHHHHHHHH--------H---TT---GG--GCTTCCEEECCSSCCHHHHHHHHHHHGGGCT
T ss_pred             HHHhCCCcCEEECcCCC-CCHhHHHHHH--------H---HH---hh--cCCCccEEECcCCCCCcHHHHHHHHHHccCC
Confidence            1 234678888887752 2200000000        0   00   11  3446888888876531    44566677778


Q ss_pred             CcCeEEeecCCCCce-----ecCCC--CCCCCcceEecccCccccc-----chhhh-ccCCCcCeEeecCC
Q 019416          230 DLNLLSISNCPSLES-----FPEGG--LPNTSLTSLLISECENLMS-----LPHQI-HKATSLQDLSVSGC  287 (341)
Q Consensus       230 ~L~~L~l~~c~~l~~-----~~~~~--~~~~~L~~L~l~~~~~l~~-----l~~~l-~~l~~L~~L~l~~c  287 (341)
                      +|+.|++++|. +..     ++...  ..+++|++|++++|. ++.     +|..+ ..+++|++|++++|
T Consensus       245 ~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          245 NLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             TCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             CcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            88888888764 322     12211  113578888888763 554     66666 55788888888775

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.32  E-value=2.1e-11  Score=117.36  Aligned_cols=110  Identities=27%  Similarity=0.391  Sum_probs=58.0

Q ss_pred             CcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhhhcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCC
Q 019416           41 TLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDC  120 (341)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~  120 (341)
                      +|++|+++++ .++.+|..+  +++|++|++++| .+..+-+.  +++|++|++++| .+..+|.  +..+|++|++++|
T Consensus        60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N-~l~~ip~~--l~~L~~L~Ls~N-~l~~ip~--l~~~L~~L~Ls~N  130 (571)
T 3cvr_A           60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQN-ALISLPEL--PASLEYLDACDN-RLSTLPE--LPASLKHLDVDNN  130 (571)
T ss_dssp             TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSS-CCSCCCCC--CTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSS
T ss_pred             CccEEEeCCC-CCCccCHhH--cCCCCEEECcCC-CCcccccc--cCCCCEEEccCC-CCCCcch--hhcCCCEEECCCC
Confidence            6777777765 445565544  266777777763 34333334  566666666664 4444554  3336666666665


Q ss_pred             CChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeec
Q 019416          121 TNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVN  168 (341)
Q Consensus       121 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~  168 (341)
                      . +..    +|... ++|+.|++++ +.++.+|.  .+++|+.|++++
T Consensus       131 ~-l~~----lp~~l-~~L~~L~Ls~-N~l~~lp~--~l~~L~~L~Ls~  169 (571)
T 3cvr_A          131 Q-LTM----LPELP-ALLEYINADN-NQLTMLPE--LPTSLEVLSVRN  169 (571)
T ss_dssp             C-CSC----CCCCC-TTCCEEECCS-SCCSCCCC--CCTTCCEEECCS
T ss_pred             c-CCC----CCCcC-ccccEEeCCC-CccCcCCC--cCCCcCEEECCC
Confidence            4 333    44311 5555555554 23444443  334455555444

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.32  E-value=6.8e-11  Score=103.40  Aligned_cols=191  Identities=20%  Similarity=0.205  Sum_probs=110.8

Q ss_pred             cceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEee
Q 019416           89 LEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIV  167 (341)
Q Consensus        89 L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~  167 (341)
                      +..+++.+. .+........+++|+.|.+.++. +..    ++.... ++|++|+++++ .++.++....+++|++|+++
T Consensus        21 l~~l~l~~~-~~~~~~~~~~l~~L~~L~l~~~~-i~~----~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~   93 (272)
T 3rfs_A           21 TIKANLKKK-SVTDAVTQNELNSIDQIIANNSD-IKS----VQGIQYLPNVRYLALGGN-KLHDISALKELTNLTYLILT   93 (272)
T ss_dssp             HHHHHHTCS-CTTSEECHHHHTTCCEEECTTSC-CCC----CTTGGGCTTCCEEECTTS-CCCCCGGGTTCTTCCEEECT
T ss_pred             HHHHHhcCc-ccccccccccccceeeeeeCCCC-ccc----ccccccCCCCcEEECCCC-CCCCchhhcCCCCCCEEECC
Confidence            334444432 33333333346778888888775 333    332222 78888888774 45555544556777777777


Q ss_pred             ccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecC
Q 019416          168 NCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPE  247 (341)
Q Consensus       168 ~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~  247 (341)
                      ++ .++.++..              .     +  ..+++|+.|+++++.-....+..+..+++|++|++++| .+..++.
T Consensus        94 ~n-~l~~~~~~--------------~-----~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~  150 (272)
T 3rfs_A           94 GN-QLQSLPNG--------------V-----F--DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHN-QLQSLPK  150 (272)
T ss_dssp             TS-CCCCCCTT--------------T-----T--TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCT
T ss_pred             CC-ccCccChh--------------H-----h--cCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCC-ccCccCH
Confidence            65 23332210              0     1  13345778888775432223344667778888888776 4555554


Q ss_pred             CC-CCCCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCC
Q 019416          248 GG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCE  311 (341)
Q Consensus       248 ~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~  311 (341)
                      .. ..+++|++|+++++ .++.++. .+..+++|+.|++++| .+..++..  ...++|++|++.+++
T Consensus       151 ~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  216 (272)
T 3rfs_A          151 GVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNP  216 (272)
T ss_dssp             TTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             HHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCC
Confidence            33 23467888888775 4666654 3567777888888764 45555543  235677777777654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.30  E-value=8.9e-12  Score=110.22  Aligned_cols=122  Identities=15%  Similarity=0.084  Sum_probs=75.1

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK  113 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~  113 (341)
                      +..+++|++|++++| .++.++. +..+++|++|++++| .+..+  +..  +++|++|++++| .+..++....+++|+
T Consensus        42 ~~~l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n-~l~~~~~l~~--l~~L~~L~l~~n-~l~~~~~l~~l~~L~  115 (291)
T 1h6t_A           42 QNELNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGN-KLTDIKPLAN--LKNLGWLFLDEN-KVKDLSSLKDLKKLK  115 (291)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSS-CCCCCGGGTT--CTTCCEEECCSS-CCCCGGGGTTCTTCC
T ss_pred             hhhcCcccEEEccCC-CcccChh-HhcCCCCCEEEccCC-ccCCCccccc--CCCCCEEECCCC-cCCCChhhccCCCCC
Confidence            445788888888875 4455543 666788888888874 45444  677  888888888775 566666666677788


Q ss_pred             EEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeecc
Q 019416          114 RLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNC  169 (341)
Q Consensus       114 ~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~  169 (341)
                      +|++++|. +..    ++.... ++|+.|+++++ .++.++....+++|+.|+++++
T Consensus       116 ~L~L~~n~-i~~----~~~l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          116 SLSLEHNG-ISD----INGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             EEECTTSC-CCC----CGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS
T ss_pred             EEECCCCc-CCC----ChhhcCCCCCCEEEccCC-cCCcchhhccCCCCCEEEccCC
Confidence            88887775 333    322111 66666666653 4444432233445555555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.29  E-value=1e-10  Score=113.96  Aligned_cols=257  Identities=18%  Similarity=0.155  Sum_probs=145.4

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh-hcccCCCCcceEeeecCCCCccccCCCCCCCccE
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL-LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKR  114 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~-~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~  114 (341)
                      +..+.+++.+.+.++.. ..++. +....+|+.|++.++ .+..+ ...  +..|+.+++.++ .....+....+++|+.
T Consensus       302 ~~~~~~l~~l~~~~~~~-~~~~~-~~~~~~L~~L~l~~~-~~~~~~~~~--l~~L~~l~l~~n-~~~~~~~~~~l~~L~~  375 (635)
T 4g8a_A          302 FNCLTNVSSFSLVSVTI-ERVKD-FSYNFGWQHLELVNC-KFGQFPTLK--LKSLKRLTFTSN-KGGNAFSEVDLPSLEF  375 (635)
T ss_dssp             TGGGTTCSEEEEESCEE-EECGG-GGSCCCCSEEEEESC-EESSCCCCB--CTTCCEEEEESC-CSCCBCCCCBCTTCCE
T ss_pred             hhhhccccccccccccc-ccccc-cccchhhhhhhcccc-cccCcCccc--chhhhhcccccc-cCCCCccccccccccc
Confidence            34456677777765432 22222 344567777777774 34333 445  677777777764 3333333334677888


Q ss_pred             EEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccccceEEeeccCCccccCc----------ceee
Q 019416          115 LKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPATLRHLRIVNCMNLKSLGE----------SSKI  181 (341)
Q Consensus       115 L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~L~~L~l~~~~~l~~~~~----------~l~l  181 (341)
                      |+++++......  ..+....  .+|+.+++..+. ....+.. ..+++|+.+++.++......+.          .+++
T Consensus       376 L~ls~n~l~~~~--~~~~~~~~~~~L~~L~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l  452 (635)
T 4g8a_A          376 LDLSRNGLSFKG--CCSQSDFGTISLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI  452 (635)
T ss_dssp             EECCSSCCBEEE--ECCHHHHSCSCCCEEECCSCS-EEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC
T ss_pred             chhhcccccccc--ccccchhhhhhhhhhhccccc-cccccccccccccccchhhhhccccccccccccccccccccccc
Confidence            888776532100  0111111  677777776643 2222222 4456777777665432221111          1111


Q ss_pred             eCCCCCCcCCCcccccccccccccccceEeeccCcCCCc-ccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEe
Q 019416          182 RNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEF-LPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLL  259 (341)
Q Consensus       182 ~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~  259 (341)
                      +.+.......+.     +  ..++.++.|+++++..... .|..+..+++|+.|++++| .++.+++.. ..+++|++|+
T Consensus       453 s~n~l~~~~~~~-----~--~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~~~f~~l~~L~~L~  524 (635)
T 4g8a_A          453 SHTHTRVAFNGI-----F--NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLN  524 (635)
T ss_dssp             TTSCCEECCTTT-----T--TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEE
T ss_pred             cccccccccccc-----c--ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCC-ccCCcChHHHcCCCCCCEEE
Confidence            111100000000     0  1344688888888764443 5677888888999999886 466665433 3457888999


Q ss_pred             cccCcccccch-hhhccCCCcCeEeecCCCCCccCCCCC---CCCCccEEEeecCC
Q 019416          260 ISECENLMSLP-HQIHKATSLQDLSVSGCPSLMSFPHGG---LPPNLISLGIIDCE  311 (341)
Q Consensus       260 l~~~~~l~~l~-~~l~~l~~L~~L~l~~c~~l~~~~~~~---~~~~L~~L~l~~c~  311 (341)
                      ++++ +++.++ ..+..+++|+.|+++++ .+..++...   .+++|++|++++++
T Consensus       525 Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np  578 (635)
T 4g8a_A          525 MSHN-NFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQND  578 (635)
T ss_dssp             CTTS-CCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred             CCCC-cCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence            9885 577765 35788888999999874 566665442   34688899887744

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.29  E-value=5.6e-13  Score=122.67  Aligned_cols=233  Identities=17%  Similarity=0.151  Sum_probs=135.0

Q ss_pred             CccccccccCCCCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCcc----ccC--------CCCCCCc
Q 019416           53 LASFLRSELAATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFSN----SKQ--------DYFPTTL  112 (341)
Q Consensus        53 ~~~~~~~~~~l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~~----~~~--------~~~~~~L  112 (341)
                      ...++..+..+++|++|++++| .+...        +..  +++|++|++++| .+..    +|.        ...+++|
T Consensus        21 ~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~--~~~L~~L~Ls~~-~~~~l~~~~~~~~~~l~~~l~~~~~L   96 (386)
T 2ca6_A           21 EKSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIAS--KKDLEIAEFSDI-FTGRVKDEIPEALRLLLQALLKCPKL   96 (386)
T ss_dssp             HHTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTT--CTTCCEEECCSC-CTTSCGGGSHHHHHHHHHHHTTCTTC
T ss_pred             HHHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHh--CCCccEEeCccc-ccCccccchhHHHHHHHHHHhhCCcc
Confidence            3344444566799999999995 44332        667  899999999886 2222    221        1346899


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC------CCc---------cccceEEeeccCCcc--
Q 019416          113 KRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN------QLP---------ATLRHLRIVNCMNLK--  173 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~------~~~---------~~L~~L~l~~~~~l~--  173 (341)
                      ++|++++|.....-...++..+.  ++|++|++++| .++.....      ..+         ++|++|+++++. +.  
T Consensus        97 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~  174 (386)
T 2ca6_A           97 HTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENG  174 (386)
T ss_dssp             CEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGG
T ss_pred             cEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcH
Confidence            99999998744410001444444  88999999885 34322111      111         578888887653 21  


Q ss_pred             ccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCC------cccccCCCCCCcCeEEeecCCCC-----
Q 019416          174 SLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELE------FLPEDMHNFTDLNLLSISNCPSL-----  242 (341)
Q Consensus       174 ~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~------~l~~~~~~l~~L~~L~l~~c~~l-----  242 (341)
                      .++..              ..+   +  ..+++|++|++++|. +.      .++..+..+++|+.|++++|. +     
T Consensus       175 ~~~~l--------------~~~---l--~~~~~L~~L~L~~n~-l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~  233 (386)
T 2ca6_A          175 SMKEW--------------AKT---F--QSHRLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGS  233 (386)
T ss_dssp             GHHHH--------------HHH---H--HHCTTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHH
T ss_pred             HHHHH--------------HHH---H--HhCCCcCEEECcCCC-CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHH
Confidence            11100              000   1  023358888888763 33      123366677788888887764 3     


Q ss_pred             ceecCCCCCCCCcceEecccCccccc-----chhhhcc--CCCcCeEeecCCCCCcc-----CCCC--CCCCCccEEEee
Q 019416          243 ESFPEGGLPNTSLTSLLISECENLMS-----LPHQIHK--ATSLQDLSVSGCPSLMS-----FPHG--GLPPNLISLGII  308 (341)
Q Consensus       243 ~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~l~~--l~~L~~L~l~~c~~l~~-----~~~~--~~~~~L~~L~l~  308 (341)
                      ..++.....+++|++|++++|. ++.     ++..+..  +++|+.|++++| .+..     ++..  ...++|++|++.
T Consensus       234 ~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~  311 (386)
T 2ca6_A          234 SALAIALKSWPNLRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELN  311 (386)
T ss_dssp             HHHHHHGGGCTTCCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECT
T ss_pred             HHHHHHHccCCCcCEEECCCCC-CchhhHHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEcc
Confidence            3333322234578888887764 543     3445533  777888888775 3444     4332  124677778777


Q ss_pred             cCCCCC
Q 019416          309 DCENLI  314 (341)
Q Consensus       309 ~c~~~~  314 (341)
                      +|..-.
T Consensus       312 ~N~l~~  317 (386)
T 2ca6_A          312 GNRFSE  317 (386)
T ss_dssp             TSBSCT
T ss_pred             CCcCCc
Confidence            765443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.27  E-value=3e-11  Score=100.39  Aligned_cols=122  Identities=18%  Similarity=0.121  Sum_probs=65.2

Q ss_pred             ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCce-ecCCCCCCCCcceEecccCccccc-chhhhccCCCcCeEe
Q 019416          206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLES-FPEGGLPNTSLTSLLISECENLMS-LPHQIHKATSLQDLS  283 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~-l~~~l~~l~~L~~L~  283 (341)
                      +|+.|++++| .+..+ ..+..+++|++|++++|. +.. .+.....+++|++|+++++. ++. .+..+..+++|++|+
T Consensus        67 ~L~~L~l~~n-~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~Ls~n~-i~~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           67 NIKDLTINNI-HATNY-NPISGLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLLDISHSA-HDDSILTKINTLPKVNSID  142 (197)
T ss_dssp             TCSEEEEESC-CCSCC-GGGTTCTTCCEEEEECTT-CBGGGSCCCTTCTTCCEEECCSSB-CBGGGHHHHTTCSSCCEEE
T ss_pred             CCCEEEccCC-CCCcc-hhhhcCCCCCEEEeECCc-cCcccChhhcCCCCCCEEEecCCc-cCcHhHHHHhhCCCCCEEE
Confidence            4555555554 33333 244555666666666643 222 22222234566666666643 432 445566666667776


Q ss_pred             ecCCCCCccCCCCCCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          284 VSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       284 l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      +++|..+.+++.-...++|++|++++|.. ...+  .+..+++|++|++++
T Consensus       143 L~~n~~i~~~~~l~~l~~L~~L~l~~n~i-~~~~--~l~~l~~L~~L~l~~  190 (197)
T 4ezg_A          143 LSYNGAITDIMPLKTLPELKSLNIQFDGV-HDYR--GIEDFPKLNQLYAFS  190 (197)
T ss_dssp             CCSCTBCCCCGGGGGCSSCCEEECTTBCC-CCCT--TGGGCSSCCEEEECB
T ss_pred             ccCCCCccccHhhcCCCCCCEEECCCCCC-cChH--HhccCCCCCEEEeeC
Confidence            66654455554323356666777666532 2222  246667777777766

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.27  E-value=6.4e-11  Score=113.93  Aligned_cols=178  Identities=26%  Similarity=0.278  Sum_probs=126.1

Q ss_pred             CCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEe
Q 019416           87 TSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRI  166 (341)
Q Consensus        87 ~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l  166 (341)
                      .+|+.|+++++ .+..+|.. .+++|++|++++|. +..    +| ...++|++|+++++ .++.+|.  +..+|+.|++
T Consensus        59 ~~L~~L~Ls~n-~L~~lp~~-l~~~L~~L~Ls~N~-l~~----ip-~~l~~L~~L~Ls~N-~l~~ip~--l~~~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQLNRL-NLSSLPDN-LPPQITVLEITQNA-LIS----LP-ELPASLEYLDACDN-RLSTLPE--LPASLKHLDV  127 (571)
T ss_dssp             TTCSEEECCSS-CCSCCCSC-CCTTCSEEECCSSC-CSC----CC-CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEEC
T ss_pred             CCccEEEeCCC-CCCccCHh-HcCCCCEEECcCCC-Ccc----cc-cccCCCCEEEccCC-CCCCcch--hhcCCCEEEC
Confidence            38999999885 67777753 35889999999986 445    77 22289999999884 7777776  4458899998


Q ss_pred             eccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceec
Q 019416          167 VNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFP  246 (341)
Q Consensus       167 ~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~  246 (341)
                      +++ .++.+|.                         .+++|+.|+++++ .++.+|.   .+++|+.|++++|. ++.+|
T Consensus       128 s~N-~l~~lp~-------------------------~l~~L~~L~Ls~N-~l~~lp~---~l~~L~~L~Ls~N~-L~~lp  176 (571)
T 3cvr_A          128 DNN-QLTMLPE-------------------------LPALLEYINADNN-QLTMLPE---LPTSLEVLSVRNNQ-LTFLP  176 (571)
T ss_dssp             CSS-CCSCCCC-------------------------CCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CSCCC
T ss_pred             CCC-cCCCCCC-------------------------cCccccEEeCCCC-ccCcCCC---cCCCcCEEECCCCC-CCCcc
Confidence            875 3443332                         2335889999885 4556665   46788999998864 56566


Q ss_pred             CCCCCCCCcceEecccCcccccchhhhccCCCc-------CeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCC
Q 019416          247 EGGLPNTSLTSLLISECENLMSLPHQIHKATSL-------QDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLI  314 (341)
Q Consensus       247 ~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L-------~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~  314 (341)
                      .  +. ++|++|+++++ .++.+|. +..  +|       +.|++++ +.++.+|.. ...++|+.|++++++...
T Consensus       177 ~--l~-~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~  244 (571)
T 3cvr_A          177 E--LP-ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSS  244 (571)
T ss_dssp             C--CC-TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCH
T ss_pred             h--hh-CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCC
Confidence            6  33 68999999885 5888876 433  66       8888887 467777764 337788888888876544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.24  E-value=3.6e-10  Score=97.50  Aligned_cols=169  Identities=24%  Similarity=0.263  Sum_probs=92.7

Q ss_pred             CccEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCC
Q 019416          111 TLKRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVV  188 (341)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~  188 (341)
                      +.++++.+++. +..    +|..+.++++.|++++ +.++.++..  ..+++|+.|+++++ .++.++..          
T Consensus        15 ~~~~l~~~~~~-l~~----~p~~~~~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~----------   77 (251)
T 3m19_A           15 GKKEVDCQGKS-LDS----VPSGIPADTEKLDLQS-TGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAG----------   77 (251)
T ss_dssp             GGTEEECTTCC-CSS----CCSCCCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTT----------
T ss_pred             CCeEEecCCCC-ccc----cCCCCCCCCCEEEccC-CCcCccCHhHhcCcccCCEEECCCC-cCCccCHh----------
Confidence            34556665543 444    5555446677777766 344444432  34566777776664 23222110          


Q ss_pred             cCCCcccccccccccccccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCccc
Q 019416          189 GPEGESSLENMTSSHTLELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENL  266 (341)
Q Consensus       189 ~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l  266 (341)
                            .   +  ..+++|+.|+++++. +..+ +..+..+++|++|+++++ .++.++... ..+++|++|+++++ .+
T Consensus        78 ------~---~--~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~l  143 (251)
T 3m19_A           78 ------V---F--DDLTELGTLGLANNQ-LASLPLGVFDHLTQLDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTN-QL  143 (251)
T ss_dssp             ------T---T--TTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CC
T ss_pred             ------H---h--ccCCcCCEEECCCCc-ccccChhHhcccCCCCEEEcCCC-cCCCcChhHhccCCcccEEECcCC-cC
Confidence                  0   1  123357777777643 3333 345566677777777764 455555433 22457777777764 46


Q ss_pred             ccchh-hhccCCCcCeEeecCCCCCccCCCCC--CCCCccEEEeecCC
Q 019416          267 MSLPH-QIHKATSLQDLSVSGCPSLMSFPHGG--LPPNLISLGIIDCE  311 (341)
Q Consensus       267 ~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~  311 (341)
                      +.++. .+..+++|++|+++++ .+..++...  ..++|++|++.+++
T Consensus       144 ~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          144 QSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred             CccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCc
Confidence            66654 4666677777777663 455555432  24667777776654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.22  E-value=2e-10  Score=95.41  Aligned_cols=146  Identities=15%  Similarity=0.097  Sum_probs=102.4

Q ss_pred             cccceEeecCCCCccccCCCCCc---cccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEee
Q 019416          136 LALESLEVDGCSSLFSLPINQLP---ATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEI  212 (341)
Q Consensus       136 ~~L~~L~l~~~~~l~~l~~~~~~---~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l  212 (341)
                      ++|+.|+++++ .++.++   ..   ++|++|+++++ .+..++.                     +.  .+++|+.|++
T Consensus        44 ~~L~~L~l~~n-~i~~l~---~l~~l~~L~~L~l~~n-~~~~~~~---------------------l~--~l~~L~~L~l   95 (197)
T 4ezg_A           44 NSLTYITLANI-NVTDLT---GIEYAHNIKDLTINNI-HATNYNP---------------------IS--GLSNLERLRI   95 (197)
T ss_dssp             HTCCEEEEESS-CCSCCT---TGGGCTTCSEEEEESC-CCSCCGG---------------------GT--TCTTCCEEEE
T ss_pred             CCccEEeccCC-CccChH---HHhcCCCCCEEEccCC-CCCcchh---------------------hh--cCCCCCEEEe
Confidence            78888888773 555443   35   45666666665 3332211                     21  4557999999


Q ss_pred             ccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCcc
Q 019416          213 WDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMS  292 (341)
Q Consensus       213 ~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~  292 (341)
                      +++.-....+..+..+++|+.|++++|.-....+.....+++|++|++++|..++.++ .+..+++|+.|++++| .+..
T Consensus        96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n-~i~~  173 (197)
T 4ezg_A           96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFD-GVHD  173 (197)
T ss_dssp             ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTB-CCCC
T ss_pred             ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCC-CCcC
Confidence            9975444467888999999999999975322233322335699999999976588887 7889999999999885 5777


Q ss_pred             CCCCCCCCCccEEEeecCC
Q 019416          293 FPHGGLPPNLISLGIIDCE  311 (341)
Q Consensus       293 ~~~~~~~~~L~~L~l~~c~  311 (341)
                      ++.-...++|++|++.+++
T Consensus       174 ~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          174 YRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CTTGGGCSSCCEEEECBC-
T ss_pred             hHHhccCCCCCEEEeeCcc
Confidence            7643456899999998864

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.21  E-value=5.2e-11  Score=105.26  Aligned_cols=99  Identities=15%  Similarity=0.097  Sum_probs=62.0

Q ss_pred             cCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcc-cc
Q 019416           61 LAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKG-LA  137 (341)
Q Consensus        61 ~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~  137 (341)
                      ..+++|+.|++++| .+..+  +..  +++|++|++++| .+..++....+++|++|++++|. +..    ++.... ++
T Consensus        43 ~~l~~L~~L~l~~~-~i~~~~~~~~--l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~-l~~----~~~l~~l~~  113 (291)
T 1h6t_A           43 NELNSIDQIIANNS-DIKSVQGIQY--LPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENK-VKD----LSSLKDLKK  113 (291)
T ss_dssp             HHHHTCCEEECTTS-CCCCCTTGGG--CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC-CCC----GGGGTTCTT
T ss_pred             hhcCcccEEEccCC-CcccChhHhc--CCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCc-CCC----ChhhccCCC
Confidence            35678888888874 45444  777  888888888775 55555555567788888888775 333    433222 67


Q ss_pred             cceEeecCCCCccccCCCCCccccceEEeecc
Q 019416          138 LESLEVDGCSSLFSLPINQLPATLRHLRIVNC  169 (341)
Q Consensus       138 L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~  169 (341)
                      |++|+++++ .++.++....+++|+.|+++++
T Consensus       114 L~~L~L~~n-~i~~~~~l~~l~~L~~L~l~~n  144 (291)
T 1h6t_A          114 LKSLSLEHN-GISDINGLVHLPQLESLYLGNN  144 (291)
T ss_dssp             CCEEECTTS-CCCCCGGGGGCTTCCEEECCSS
T ss_pred             CCEEECCCC-cCCCChhhcCCCCCCEEEccCC
Confidence            777777663 4544443344456666666554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.18  E-value=6.4e-11  Score=114.99  Aligned_cols=167  Identities=14%  Similarity=0.110  Sum_probs=113.4

Q ss_pred             CCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416           35 GIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL  112 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L  112 (341)
                      .+..+++|+.|+++++ .++.++ .+..+++|+.|++++| .+..+  +..  +++|+.|++++| .+..++....+++|
T Consensus        38 ~~~~L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N-~l~~~~~l~~--l~~L~~L~Ls~N-~l~~l~~l~~l~~L  111 (605)
T 1m9s_A           38 TQNELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLTN--LKNLGWLFLDEN-KIKDLSSLKDLKKL  111 (605)
T ss_dssp             CHHHHTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTS-CCCCCGGGGG--CTTCCEEECCSS-CCCCCTTSTTCTTC
T ss_pred             chhcCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCC-CCCCChhhcc--CCCCCEEECcCC-CCCCChhhccCCCC
Confidence            3456888999999976 455555 3777899999999985 55555  778  999999999886 67777766778899


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCC
Q 019416          113 KRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPE  191 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~  191 (341)
                      +.|++++|. +..    ++.... ++|+.|++++| .+..++....+++|+.|+++++. +..++.              
T Consensus       112 ~~L~Ls~N~-l~~----l~~l~~l~~L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~N~-l~~~~~--------------  170 (605)
T 1m9s_A          112 KSLSLEHNG-ISD----INGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQ-ISDIVP--------------  170 (605)
T ss_dssp             CEEECTTSC-CCC----CGGGGGCTTCSEEECCSS-CCCCCGGGGSCTTCSEEECCSSC-CCCCGG--------------
T ss_pred             CEEEecCCC-CCC----CccccCCCccCEEECCCC-ccCCchhhcccCCCCEEECcCCc-CCCchh--------------
Confidence            999999886 333    433222 88888888774 55555444556777777777653 332211              


Q ss_pred             CcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecC
Q 019416          192 GESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNC  239 (341)
Q Consensus       192 ~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c  239 (341)
                               ...+++|+.|++++| .+..++ .+..+++|+.|++++|
T Consensus       171 ---------l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          171 ---------LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             ---------GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSE
T ss_pred             ---------hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCC
Confidence                     113335777777775 344443 4666777777777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.16  E-value=5.9e-11  Score=115.20  Aligned_cols=98  Identities=15%  Similarity=0.102  Sum_probs=50.8

Q ss_pred             cCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhhcc-cc
Q 019416           61 LAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQKG-LA  137 (341)
Q Consensus        61 ~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~  137 (341)
                      ..+++|+.|++++| .+..+  +..  +++|+.|++++| .+..++....+++|+.|++++|. +..    ++.... ++
T Consensus        40 ~~L~~L~~L~l~~n-~i~~l~~l~~--l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~Ls~N~-l~~----l~~l~~l~~  110 (605)
T 1m9s_A           40 NELNSIDQIIANNS-DIKSVQGIQY--LPNVTKLFLNGN-KLTDIKPLTNLKNLGWLFLDENK-IKD----LSSLKDLKK  110 (605)
T ss_dssp             HHHTTCCCCBCTTC-CCCCCTTGGG--CTTCCEEECTTS-CCCCCGGGGGCTTCCEEECCSSC-CCC----CTTSTTCTT
T ss_pred             hcCCCCCEEECcCC-CCCCChHHcc--CCCCCEEEeeCC-CCCCChhhccCCCCCEEECcCCC-CCC----ChhhccCCC
Confidence            34566777777663 34444  666  677777777664 44444444446666666666654 222    321111 55


Q ss_pred             cceEeecCCCCccccCCCCCccccceEEeec
Q 019416          138 LESLEVDGCSSLFSLPINQLPATLRHLRIVN  168 (341)
Q Consensus       138 L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~  168 (341)
                      |+.|+++++ .+..++....+++|+.|++++
T Consensus       111 L~~L~Ls~N-~l~~l~~l~~l~~L~~L~Ls~  140 (605)
T 1m9s_A          111 LKSLSLEHN-GISDINGLVHLPQLESLYLGN  140 (605)
T ss_dssp             CCEEECTTS-CCCCCGGGGGCTTCSEEECCS
T ss_pred             CCEEEecCC-CCCCCccccCCCccCEEECCC
Confidence            555555552 333333323344455555544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.14  E-value=5.5e-10  Score=96.35  Aligned_cols=143  Identities=17%  Similarity=0.149  Sum_probs=84.9

Q ss_pred             CchhhhhhcccCCC---ccccCCCCCCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCC
Q 019416           17 VPKNFLALALFPDE---DKILGIRTGETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTS   88 (341)
Q Consensus        17 ~~~~~~~l~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~   88 (341)
                      +|..+..+.+..+.   .....+..+++|++|++++| .++.+ +..+..+++|++|+++++ .+..+    +..  +++
T Consensus        33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~--l~~  108 (251)
T 3m19_A           33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYN-QLQTLSAGVFDDLTELGTLGLANN-QLASLPLGVFDH--LTQ  108 (251)
T ss_dssp             CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTS-CCCCCCTTTTTT--CTT
T ss_pred             CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCC-cCCccCHhHhccCCcCCEEECCCC-cccccChhHhcc--cCC
Confidence            44455555553331   11124566777777777775 34444 333566777777777773 44443    566  777


Q ss_pred             cceEeeecCCCCccccCC--CCCCCccEEEEeCCCChHHHHHHhhh-hcc--cccceEeecCCCCccccCCC--CCcccc
Q 019416           89 LEYLEFSSCLFFSNSKQD--YFPTTLKRLKICDCTNAELILKVLMD-QKG--LALESLEVDGCSSLFSLPIN--QLPATL  161 (341)
Q Consensus        89 L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L  161 (341)
                      |++|+++++ .+..++..  ..+++|++|++++|. +..    ++. .+.  ++|+.|++++ +.++.++..  ..+++|
T Consensus       109 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~----~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L  181 (251)
T 3m19_A          109 LDKLYLGGN-QLKSLPSGVFDRLTKLKELRLNTNQ-LQS----IPAGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKL  181 (251)
T ss_dssp             CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCC----CCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred             CCEEEcCCC-cCCCcChhHhccCCcccEEECcCCc-CCc----cCHHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCC
Confidence            777777764 55555542  336777777777774 333    443 232  7777777776 455555543  345677


Q ss_pred             ceEEeeccC
Q 019416          162 RHLRIVNCM  170 (341)
Q Consensus       162 ~~L~l~~~~  170 (341)
                      +.|++++++
T Consensus       182 ~~L~l~~N~  190 (251)
T 3m19_A          182 QTITLFGNQ  190 (251)
T ss_dssp             CEEECCSCC
T ss_pred             CEEEeeCCc
Confidence            777777653

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.11  E-value=2.2e-10  Score=99.67  Aligned_cols=142  Identities=17%  Similarity=0.136  Sum_probs=68.9

Q ss_pred             cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccC
Q 019416          136 LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDC  215 (341)
Q Consensus       136 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~  215 (341)
                      ++|+.|+++++ .++.++....+++|+.|+++++ .+..++.                     +  ..+++|+.|+++++
T Consensus        41 ~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N-~i~~~~~---------------------l--~~l~~L~~L~L~~N   95 (263)
T 1xeu_A           41 SGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHN-QISDLSP---------------------L--KDLTKLEELSVNRN   95 (263)
T ss_dssp             TTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGG---------------------G--TTCSSCCEEECCSS
T ss_pred             CcCcEEECcCC-CcccchHHhhCCCCCEEECCCC-ccCCChh---------------------h--ccCCCCCEEECCCC
Confidence            56666666553 4555543344456666666553 2332221                     0  12234666666654


Q ss_pred             cCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCC
Q 019416          216 LELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPH  295 (341)
Q Consensus       216 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~  295 (341)
                       .++.++....  ++|+.|++++| .++.++. ...+++|++|+++++ .++.++ .+..+++|+.|+++++ .+..++.
T Consensus        96 -~l~~l~~~~~--~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N-~i~~~~~  167 (263)
T 1xeu_A           96 -RLKNLNGIPS--ACLSRLFLDNN-ELRDTDS-LIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGN-EITNTGG  167 (263)
T ss_dssp             -CCSCCTTCCC--SSCCEEECCSS-CCSBSGG-GTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTS-CCCBCTT
T ss_pred             -ccCCcCcccc--CcccEEEccCC-ccCCChh-hcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCC-cCcchHH
Confidence             3333432222  55666666654 2333322 112346666666653 355554 4555666666666553 4444422


Q ss_pred             CCCCCCccEEEeecC
Q 019416          296 GGLPPNLISLGIIDC  310 (341)
Q Consensus       296 ~~~~~~L~~L~l~~c  310 (341)
                      -...++|+.|+++++
T Consensus       168 l~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          168 LTRLKKVNWIDLTGQ  182 (263)
T ss_dssp             STTCCCCCEEEEEEE
T ss_pred             hccCCCCCEEeCCCC
Confidence            233455666666554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.10  E-value=9.7e-12  Score=113.43  Aligned_cols=80  Identities=11%  Similarity=-0.064  Sum_probs=41.3

Q ss_pred             ccceEeeccCcCCCccc----ccCCCC-CCcCeEEeecCCCCce-----ecCCCCC-CCCcceEecccCcccccc-----
Q 019416          206 ELRELEIWDCLELEFLP----EDMHNF-TDLNLLSISNCPSLES-----FPEGGLP-NTSLTSLLISECENLMSL-----  269 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~----~~~~~l-~~L~~L~l~~c~~l~~-----~~~~~~~-~~~L~~L~l~~~~~l~~l-----  269 (341)
                      +|++|++++|.-....+    ..+... ++|+.|++++|. +..     ++..... .++|++|+++++ .++..     
T Consensus       168 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l  245 (362)
T 3goz_A          168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLN-CLHGPSLENL  245 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSS-CCCCCCHHHH
T ss_pred             cccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCC-CCCcHHHHHH
Confidence            47777777764222222    123334 377777777753 332     1111100 136777777765 35432     


Q ss_pred             hhhhccCCCcCeEeecCC
Q 019416          270 PHQIHKATSLQDLSVSGC  287 (341)
Q Consensus       270 ~~~l~~l~~L~~L~l~~c  287 (341)
                      ...+..+++|+.|++++|
T Consensus       246 ~~~~~~l~~L~~L~L~~n  263 (362)
T 3goz_A          246 KLLKDSLKHLQTVYLDYD  263 (362)
T ss_dssp             HHTTTTTTTCSEEEEEHH
T ss_pred             HHHHhcCCCccEEEeccC
Confidence            223455667777777665

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.09  E-value=7e-10  Score=92.79  Aligned_cols=120  Identities=23%  Similarity=0.223  Sum_probs=76.0

Q ss_pred             CCCcCeEEcCCCCCCcccccc-ccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CCCCC
Q 019416           39 GETLESLEIDNLSSLASFLRS-ELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTT  111 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~  111 (341)
                      .++|++|+++++ .++.++.. +..+++|++|+++++ .+..+    +..  +++|++|+++++ .+..++..  ..+++
T Consensus        27 ~~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~--l~~L~~L~Ls~n-~l~~~~~~~~~~l~~  101 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNK--LTSLTYLNLSTN-QLQSLPNGVFDKLTQ  101 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             CCCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCC-ccCccChhhcCC--CCCcCEEECCCC-cCCccCHhHhcCccC
Confidence            567888888876 44555443 567888888888873 45444    566  788888888775 55555542  34677


Q ss_pred             ccEEEEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCC--CCccccceEEeecc
Q 019416          112 LKRLKICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNC  169 (341)
Q Consensus       112 L~~L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~  169 (341)
                      |++|+++++. +..    ++.. +.  ++|++|++++ +.++.++..  ..+++|+.|+++++
T Consensus       102 L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          102 LKELALNTNQ-LQS----LPDGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             CCEEECCSSC-CCC----CCTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CCEEEcCCCc-Ccc----cCHhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEecCC
Confidence            8888887775 333    3332 22  6777777766 355555443  33456666666654

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.07  E-value=6.6e-11  Score=107.86  Aligned_cols=227  Identities=15%  Similarity=0.082  Sum_probs=132.0

Q ss_pred             CCCCcCeEEcCCCCCCcccc-----ccccCCC-CccEEeccCCCCchhh----hccc--CC-CCcceEeeecCCCCcccc
Q 019416           38 TGETLESLEIDNLSSLASFL-----RSELAAT-TVKQLKINKCPDLEVL----LHRM--AY-TSLEYLEFSSCLFFSNSK  104 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~~~-----~~~~~l~-~L~~L~l~~~~~l~~~----~~~~--~l-~~L~~L~l~~~~~l~~~~  104 (341)
                      ..++|++|++++|. ++..+     ..+..++ +|++|++++| .+...    +..+  .. ++|++|++++| .+....
T Consensus        20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~   96 (362)
T 3goz_A           20 IPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKS   96 (362)
T ss_dssp             SCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSC
T ss_pred             CCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHH
Confidence            44559999999874 55443     3355677 8999999985 55443    2220  02 88999999886 444332


Q ss_pred             C------CCCC-CCccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccCCC-------CCccccceEEee
Q 019416          105 Q------DYFP-TTLKRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLPIN-------QLPATLRHLRIV  167 (341)
Q Consensus       105 ~------~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~-------~~~~~L~~L~l~  167 (341)
                      .      ...+ ++|++|++++|.........+...+.   .+|++|++++| .++.....       ..+++|++|+++
T Consensus        97 ~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls  175 (362)
T 3goz_A           97 SDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLR  175 (362)
T ss_dssp             HHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECT
T ss_pred             HHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHhcCCccccEeeec
Confidence            2      1123 78999999998732210000111111   48999999884 55532211       122489999998


Q ss_pred             ccCCccccCc-ceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCc-----ccccCCC-CCCcCeEEeecCC
Q 019416          168 NCMNLKSLGE-SSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEF-----LPEDMHN-FTDLNLLSISNCP  240 (341)
Q Consensus       168 ~~~~l~~~~~-~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~-l~~L~~L~l~~c~  240 (341)
                      ++. +..... .+  .           .++...|    ++|+.|+++++. +..     ++..+.. .++|++|++++|.
T Consensus       176 ~n~-l~~~~~~~l--~-----------~~l~~~~----~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~  236 (362)
T 3goz_A          176 GNN-LASKNCAEL--A-----------KFLASIP----ASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC  236 (362)
T ss_dssp             TSC-GGGSCHHHH--H-----------HHHHTSC----TTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC
T ss_pred             CCC-CchhhHHHH--H-----------HHHHhCC----CCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC
Confidence            863 332211 00  0           0000011    259999998864 333     4555544 3589999999864


Q ss_pred             CCceecC-----CCCCCCCcceEecccCc-------ccccchhhhccCCCcCeEeecCCC
Q 019416          241 SLESFPE-----GGLPNTSLTSLLISECE-------NLMSLPHQIHKATSLQDLSVSGCP  288 (341)
Q Consensus       241 ~l~~~~~-----~~~~~~~L~~L~l~~~~-------~l~~l~~~l~~l~~L~~L~l~~c~  288 (341)
                       +...+.     ....+++|++|++++|.       .+..++..+..+++|+.|+++++.
T Consensus       237 -l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~  295 (362)
T 3goz_A          237 -LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKE  295 (362)
T ss_dssp             -CCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCB
T ss_pred             -CCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCc
Confidence             433221     11234689999998864       122344456777888999998753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.07  E-value=2.4e-10  Score=99.45  Aligned_cols=78  Identities=21%  Similarity=0.175  Sum_probs=37.4

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK  113 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~  113 (341)
                      +..+++|++|++++| .++.++ .+..+++|++|++++| .+.++  +..  +++|++|++++| .+..++.... ++|+
T Consensus        37 ~~~l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N-~i~~~~~l~~--l~~L~~L~L~~N-~l~~l~~~~~-~~L~  109 (263)
T 1xeu_A           37 QKELSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHN-QISDLSPLKD--LTKLEELSVNRN-RLKNLNGIPS-ACLS  109 (263)
T ss_dssp             HHHHTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTT--CSSCCEEECCSS-CCSCCTTCCC-SSCC
T ss_pred             hhhcCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCC-ccCCChhhcc--CCCCCEEECCCC-ccCCcCcccc-Cccc
Confidence            344555555555554 333443 3444555555555552 33333  444  555555555543 3444433333 4455


Q ss_pred             EEEEeCC
Q 019416          114 RLKICDC  120 (341)
Q Consensus       114 ~L~l~~~  120 (341)
                      +|++++|
T Consensus       110 ~L~L~~N  116 (263)
T 1xeu_A          110 RLFLDNN  116 (263)
T ss_dssp             EEECCSS
T ss_pred             EEEccCC
Confidence            5555544

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.99  E-value=5.6e-09  Score=88.73  Aligned_cols=125  Identities=21%  Similarity=0.286  Sum_probs=71.3

Q ss_pred             ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchhh-hccCCCcCeEe
Q 019416          206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPHQ-IHKATSLQDLS  283 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~  283 (341)
                      +|+.|+++++......|..+..+++|+.|+++++. +..++... ..+++|++|+++++ .++.++.. +..+++|+.|+
T Consensus        41 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           41 NAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGTN-QLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC-CCCcChhhcccCCCcCEEECCCC-cCCccChhHhCcchhhCeEe
Confidence            46777776654333335556666677777776643 45554432 23456777777664 46665543 46666777777


Q ss_pred             ecCCCCCccCCCC-CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          284 VSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       284 l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      +++ +.++.++.. ...++|++|+++++ .+...+...+..+++|+.|++.+
T Consensus       119 Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~  168 (229)
T 3e6j_A          119 MCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFG  168 (229)
T ss_dssp             CCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTT
T ss_pred             ccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeC
Confidence            765 355566544 33566777777665 33322222346666777776666

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.97  E-value=9.9e-09  Score=86.66  Aligned_cols=124  Identities=16%  Similarity=0.225  Sum_probs=84.8

Q ss_pred             ccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceec-CCCCCCCCcceEecccCcccccchhh-hccCCCcCeE
Q 019416          206 ELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFP-EGGLPNTSLTSLLISECENLMSLPHQ-IHKATSLQDL  282 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L  282 (341)
                      +++.|+++++ .+..++ ..+..+++|+.|+++++. +..+. .....+++|++|+++++ .++.+|.. +..+++|+.|
T Consensus        33 ~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           33 TITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVLYGN-KITELPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEECCCC-cCCccCHhHccCCCCCCEE
Confidence            4888888875 344554 467778888888888854 55553 33334568888888885 57777754 5778888888


Q ss_pred             eecCCCCCccCCCCC--CCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          283 SVSGCPSLMSFPHGG--LPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       283 ~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      +++++ .+..++...  ..++|++|+++++.... .+...+..+++|+.+++++
T Consensus       110 ~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~  161 (220)
T 2v9t_B          110 LLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQ  161 (220)
T ss_dssp             ECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCS
T ss_pred             ECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCC
Confidence            88774 566665443  35788888888864433 2221357778888888887

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.96  E-value=7.7e-12  Score=120.63  Aligned_cols=85  Identities=22%  Similarity=0.247  Sum_probs=57.7

Q ss_pred             ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccc--hhhhccCCCcCeEe
Q 019416          206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSL--PHQIHKATSLQDLS  283 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l--~~~l~~l~~L~~L~  283 (341)
                      +|+.|+++++ .+..+|..++.+++|+.|+++++ .++.+| ....+++|++|+++++ .++.+  |..+..+++|+.|+
T Consensus       464 ~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          464 LVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             TCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEE
T ss_pred             cCcEeecCcc-cccccchhhhcCCCCCEEECCCC-CCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEE
Confidence            5777777774 44567777777788888888775 355555 3333467888888875 57766  67778888888888


Q ss_pred             ecCCCCCccCCC
Q 019416          284 VSGCPSLMSFPH  295 (341)
Q Consensus       284 l~~c~~l~~~~~  295 (341)
                      ++++ .+..++.
T Consensus       540 L~~N-~l~~~~~  550 (567)
T 1dce_A          540 LQGN-SLCQEEG  550 (567)
T ss_dssp             CTTS-GGGGSSS
T ss_pred             ecCC-cCCCCcc
Confidence            8774 4555543

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.96  E-value=3.1e-09  Score=90.33  Aligned_cols=121  Identities=17%  Similarity=0.156  Sum_probs=96.1

Q ss_pred             CCCcCeEEcCCCCCCccc-cccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CCCCC
Q 019416           39 GETLESLEIDNLSSLASF-LRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTT  111 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~  111 (341)
                      .++|++|++++|. ++.+ +..+..+++|++|+++++ .+..+    +..  +++|++|++++| .+..++..  ..+++
T Consensus        39 ~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~--l~~L~~L~Ls~N-~l~~l~~~~~~~l~~  113 (229)
T 3e6j_A           39 PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDS--LTQLTVLDLGTN-QLTVLPSAVFDRLVH  113 (229)
T ss_dssp             CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT--CTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred             CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCC-CCCCcChhhccc--CCCcCEEECCCC-cCCccChhHhCcchh
Confidence            4889999999864 4554 666788999999999994 56555    678  999999999986 67777653  45899


Q ss_pred             ccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccC
Q 019416          112 LKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCM  170 (341)
Q Consensus       112 L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~  170 (341)
                      |++|++++|. +..    +|..+.  ++|+.|++++ +.++.++..  ..+++|+.|++.+++
T Consensus       114 L~~L~Ls~N~-l~~----lp~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          114 LKELFMCCNK-LTE----LPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             CCEEECCSSC-CCS----CCTTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             hCeEeccCCc-ccc----cCcccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            9999999986 455    777666  9999999998 577777754  456899999998764

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.91  E-value=6.7e-09  Score=87.70  Aligned_cols=121  Identities=11%  Similarity=0.105  Sum_probs=92.8

Q ss_pred             CCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCC--CCCCCc
Q 019416           40 ETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTTL  112 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~L  112 (341)
                      ++|++|+++++ .++.++. .+..+++|++|+++++ .+..+    +..  +++|++|+++++ .+..++..  ..+++|
T Consensus        32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N-~i~~~~~~~~~~--l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L  106 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNN-QISELAPDAFQG--LRSLNSLVLYGN-KITELPKSLFEGLFSL  106 (220)
T ss_dssp             TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSS-CCCEECTTTTTT--CSSCCEEECCSS-CCCCCCTTTTTTCTTC
T ss_pred             cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCC-cCCCcCHHHhhC--CcCCCEEECCCC-cCCccCHhHccCCCCC
Confidence            68999999986 5566654 5778999999999984 55554    788  999999999985 77777763  347999


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccC
Q 019416          113 KRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCM  170 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~  170 (341)
                      ++|++++|.....    .+..+.  ++|+.|++++ +.++.++..  ..+++|+.|++++++
T Consensus       107 ~~L~L~~N~l~~~----~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          107 QLLLLNANKINCL----RVDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             CEEECCSSCCCCC----CTTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCCCCCEe----CHHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeCCCC
Confidence            9999999874332    344444  8999999988 577777654  456789999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.88  E-value=3.9e-08  Score=82.03  Aligned_cols=124  Identities=27%  Similarity=0.333  Sum_probs=89.6

Q ss_pred             ccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchh-hhccCCCcCeE
Q 019416          206 ELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQDL  282 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L  282 (341)
                      +++.|+++++. +..++ ..+..+++|++|+++++ .++.++... ..+++|++|+++++ .++.++. .+..+++|++|
T Consensus        29 ~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           29 QTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNLSTN-QLQSLPNGVFDKLTQLKEL  105 (208)
T ss_dssp             TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEECCCC-cCCccCHhHhcCccCCCEE
Confidence            58899998864 44554 45678889999999885 466666543 23578999999985 5777765 36788899999


Q ss_pred             eecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          283 SVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       283 ~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      +++++ .++.++..  ...++|++|+++++. ++..+...+..+++|+++++++
T Consensus       106 ~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~  157 (208)
T 2o6s_A          106 ALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGVFDRLTSLQYIWLHD  157 (208)
T ss_dssp             ECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCS
T ss_pred             EcCCC-cCcccCHhHhccCCcCCEEECCCCc-cceeCHHHhccCCCccEEEecC
Confidence            99874 67777654  336789999998874 3333332357788999999888

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.88  E-value=5.3e-09  Score=84.26  Aligned_cols=127  Identities=24%  Similarity=0.231  Sum_probs=96.7

Q ss_pred             cccceEeeccCcCC-CcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCccccc-chhhhccCCCcCeE
Q 019416          205 LELRELEIWDCLEL-EFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMS-LPHQIHKATSLQDL  282 (341)
Q Consensus       205 ~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~l~~l~~L~~L  282 (341)
                      ++|+.|++++|.-. ..+|..+..+++|+.|++++|. ++.+ .....+++|++|+++++ .++. +|..+..+++|++|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISV-SNLPKLPKLKKLELSEN-RIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCC-SSCCCCSSCCEEEEESC-CCCSCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCCh-hhhccCCCCCEEECcCC-cCchHHHHHHhhCCCCCEE
Confidence            36999999997633 3788888889999999999975 5555 33334579999999996 4766 77777789999999


Q ss_pred             eecCCCCCccCCC--C-CCCCCccEEEeecCCCCCcccc---ccccCCCceeEEEEeCCCC
Q 019416          283 SVSGCPSLMSFPH--G-GLPPNLISLGIIDCENLIPLSQ---WELHKLKHLNKYTILGGLP  337 (341)
Q Consensus       283 ~l~~c~~l~~~~~--~-~~~~~L~~L~l~~c~~~~~~~~---~~i~~~~~L~~l~l~~~C~  337 (341)
                      ++++| .++.++.  . ...++|++|++++|.... .+.   ..+..+++|++|++++ |+
T Consensus       101 ~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~~~l~~L~~L~l~~-n~  158 (168)
T 2ell_A          101 NLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVFKLLPQLTYLDGYD-RE  158 (168)
T ss_dssp             ECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHHTTCSSCCEETTEE-TT
T ss_pred             eccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHHHhCccCcEecCCC-CC
Confidence            99986 6777652  2 446899999999985433 222   2468899999999998 65

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.88  E-value=2.3e-08  Score=90.91  Aligned_cols=167  Identities=16%  Similarity=0.135  Sum_probs=90.2

Q ss_pred             cEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCC--C-CccccceEEeeccCCccccCcceeeeCCCCCCc
Q 019416          113 KRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPIN--Q-LPATLRHLRIVNCMNLKSLGESSKIRNCDSVVG  189 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~-~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~  189 (341)
                      +.++.+++. +..    +|..+.+.++.|++++ +.++.++..  . .+++|+.|+++++ .+..++..           
T Consensus        21 ~~l~c~~~~-l~~----iP~~~~~~l~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~-----------   82 (361)
T 2xot_A           21 NILSCSKQQ-LPN----VPQSLPSYTALLDLSH-NNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSE-----------   82 (361)
T ss_dssp             TEEECCSSC-CSS----CCSSCCTTCSEEECCS-SCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTT-----------
T ss_pred             CEEEeCCCC-cCc----cCccCCCCCCEEECCC-CCCCccChhhhhhcccccCEEECCCC-cCCccChh-----------
Confidence            456655543 444    6655546677777776 456666554  2 4567777777664 23333210           


Q ss_pred             CCCcccccccccccccccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCcccc
Q 019416          190 PEGESSLENMTSSHTLELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLM  267 (341)
Q Consensus       190 ~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~  267 (341)
                           +   +.  .+++|+.|+++++. +..++ ..|..+++|+.|+++++. +..++. ....+++|++|+++++ .++
T Consensus        83 -----~---~~--~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~L~~N-~l~  149 (361)
T 2xot_A           83 -----A---FV--PVPNLRYLDLSSNH-LHTLDEFLFSDLQALEVLLLYNNH-IVVVDRNAFEDMAQLQKLYLSQN-QIS  149 (361)
T ss_dssp             -----T---TT--TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred             -----h---cc--CCCCCCEEECCCCc-CCcCCHHHhCCCcCCCEEECCCCc-ccEECHHHhCCcccCCEEECCCC-cCC
Confidence                 0   11  23357777777643 44443 346666777777777643 444433 2223457777777764 466


Q ss_pred             cchhhh----ccCCCcCeEeecCCCCCccCCCCC--CCCC--ccEEEeecCC
Q 019416          268 SLPHQI----HKATSLQDLSVSGCPSLMSFPHGG--LPPN--LISLGIIDCE  311 (341)
Q Consensus       268 ~l~~~l----~~l~~L~~L~l~~c~~l~~~~~~~--~~~~--L~~L~l~~c~  311 (341)
                      .+|..+    ..+++|+.|++++ +.++.++...  ..+.  ++.|++.+++
T Consensus       150 ~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          150 RFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             eeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEEecCCC
Confidence            666543    4566777777766 3555554321  1222  3566666643

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.86  E-value=2.6e-08  Score=84.06  Aligned_cols=29  Identities=10%  Similarity=0.156  Sum_probs=13.0

Q ss_pred             eEeeecCCCCccccCCCCCCCccEEEEeCCC
Q 019416           91 YLEFSSCLFFSNSKQDYFPTTLKRLKICDCT  121 (341)
Q Consensus        91 ~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~  121 (341)
                      .++++++ .+..+|. ..++.+++|+++++.
T Consensus        15 ~l~~s~n-~l~~iP~-~~~~~~~~L~L~~N~   43 (220)
T 2v70_A           15 TVDCSNQ-KLNKIPE-HIPQYTAELRLNNNE   43 (220)
T ss_dssp             EEECCSS-CCSSCCS-CCCTTCSEEECCSSC
T ss_pred             EeEeCCC-CcccCcc-CCCCCCCEEEcCCCc
Confidence            4455442 4444443 223444555555543

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.85  E-value=4.4e-09  Score=82.94  Aligned_cols=124  Identities=23%  Similarity=0.249  Sum_probs=93.7

Q ss_pred             cccceEeeccCcCC-CcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCccccc-chhhhccCCCcCeE
Q 019416          205 LELRELEIWDCLEL-EFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMS-LPHQIHKATSLQDL  282 (341)
Q Consensus       205 ~~L~~L~l~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~l~~l~~L~~L  282 (341)
                      ++++.|+++++... ..+|..+..+++|+.|++++| .++.+ .....+++|++|+++++ .++. +|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI-ANLPKLNKLKKLELSDN-RVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC-TTCCCCTTCCEEECCSS-CCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc-hhhhcCCCCCEEECCCC-cccchHHHHhhhCCCCCEE
Confidence            36999999997643 378888889999999999997 45555 33334579999999996 4776 78777889999999


Q ss_pred             eecCCCCCccCC--CC-CCCCCccEEEeecCCCCCcccc---ccccCCCceeEEEEe
Q 019416          283 SVSGCPSLMSFP--HG-GLPPNLISLGIIDCENLIPLSQ---WELHKLKHLNKYTIL  333 (341)
Q Consensus       283 ~l~~c~~l~~~~--~~-~~~~~L~~L~l~~c~~~~~~~~---~~i~~~~~L~~l~l~  333 (341)
                      ++++| .++.++  .. ...++|++|++++|. +...+.   ..+..+++|+.|+++
T Consensus        94 ~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence            99985 566653  22 446899999999984 343322   236788999998765

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.84  E-value=5.1e-09  Score=84.35  Aligned_cols=123  Identities=18%  Similarity=0.127  Sum_probs=93.2

Q ss_pred             CCCCCcCeEEcCCCCCCc--cccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCcc-ccCCC-CCC
Q 019416           37 RTGETLESLEIDNLSSLA--SFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSN-SKQDY-FPT  110 (341)
Q Consensus        37 ~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~-~~~~~-~~~  110 (341)
                      ...++|++|++++|. ++  .+|..+..+++|++|++++| .+..+  +..  +++|++|++++| .+.. ++... .++
T Consensus        21 ~~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~~~~~~--l~~L~~L~Ls~N-~l~~~~~~~~~~l~   95 (168)
T 2ell_A           21 RTPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINV-GLISVSNLPK--LPKLKKLELSEN-RIFGGLDMLAEKLP   95 (168)
T ss_dssp             SCTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESS-CCCCCSSCCC--CSSCCEEEEESC-CCCSCCCHHHHHCT
T ss_pred             CCcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCC-CCCChhhhcc--CCCCCEEECcCC-cCchHHHHHHhhCC
Confidence            346889999999875 44  67777788999999999995 46555  778  999999999987 4444 55433 279


Q ss_pred             CccEEEEeCCCChHHHHHHhh--hhcc--cccceEeecCCCCccccCC----C-CCccccceEEeeccC
Q 019416          111 TLKRLKICDCTNAELILKVLM--DQKG--LALESLEVDGCSSLFSLPI----N-QLPATLRHLRIVNCM  170 (341)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~--~~~~--~~L~~L~l~~~~~l~~l~~----~-~~~~~L~~L~l~~~~  170 (341)
                      +|++|++++|. +..    ++  ..+.  ++|+.|+++++ .++.++.    . ..+++|+.|+++++.
T Consensus        96 ~L~~L~Ls~N~-l~~----~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           96 NLTHLNLSGNK-LKD----ISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             TCCEEECBSSS-CCS----SGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             CCCEEeccCCc-cCc----chhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            99999999986 444    44  3333  89999999884 6666665    2 567899999998864

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.84  E-value=1.5e-08  Score=92.22  Aligned_cols=167  Identities=20%  Similarity=0.210  Sum_probs=116.2

Q ss_pred             ceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhh-c--c-cccceEeecCCCCccccCCC--CCccccce
Q 019416           90 EYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQ-K--G-LALESLEVDGCSSLFSLPIN--QLPATLRH  163 (341)
Q Consensus        90 ~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~--~-~~L~~L~l~~~~~l~~l~~~--~~~~~L~~  163 (341)
                      +.++.++ ..+..+|. ..++.++.|+++++. +..    ++.. +  . ++|++|++++ +.++.++..  ..+++|+.
T Consensus        21 ~~l~c~~-~~l~~iP~-~~~~~l~~L~Ls~N~-l~~----l~~~~~~~~l~~L~~L~L~~-N~i~~i~~~~~~~l~~L~~   92 (361)
T 2xot_A           21 NILSCSK-QQLPNVPQ-SLPSYTALLDLSHNN-LSR----LRAEWTPTRLTNLHSLLLSH-NHLNFISSEAFVPVPNLRY   92 (361)
T ss_dssp             TEEECCS-SCCSSCCS-SCCTTCSEEECCSSC-CCE----ECTTSSSSCCTTCCEEECCS-SCCCEECTTTTTTCTTCCE
T ss_pred             CEEEeCC-CCcCccCc-cCCCCCCEEECCCCC-CCc----cChhhhhhcccccCEEECCC-CcCCccChhhccCCCCCCE
Confidence            4677766 46777775 456779999999986 343    4332 2  2 8999999988 577777754  55689999


Q ss_pred             EEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCc
Q 019416          164 LRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLE  243 (341)
Q Consensus       164 L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~  243 (341)
                      |+++++. ++.++..                .   +  ..+++|+.|+++++......+..+..+++|+.|+++++ .+.
T Consensus        93 L~Ls~N~-l~~~~~~----------------~---~--~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~  149 (361)
T 2xot_A           93 LDLSSNH-LHTLDEF----------------L---F--SDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN-QIS  149 (361)
T ss_dssp             EECCSSC-CCEECTT----------------T---T--TTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCC
T ss_pred             EECCCCc-CCcCCHH----------------H---h--CCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC-cCC
Confidence            9998853 5444320                0   1  13446999999986543333678888999999999985 466


Q ss_pred             eecCCCC----CCCCcceEecccCcccccchh-hhccCCC--cCeEeecCCC
Q 019416          244 SFPEGGL----PNTSLTSLLISECENLMSLPH-QIHKATS--LQDLSVSGCP  288 (341)
Q Consensus       244 ~~~~~~~----~~~~L~~L~l~~~~~l~~l~~-~l~~l~~--L~~L~l~~c~  288 (341)
                      .++...+    .+++|++|+++++ .++.+|. .+..++.  ++.|++.+++
T Consensus       150 ~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~  200 (361)
T 2xot_A          150 RFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP  200 (361)
T ss_dssp             SCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred             eeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence            6665432    3579999999985 6888774 5677776  4888888743

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.81  E-value=7.6e-08  Score=81.18  Aligned_cols=124  Identities=16%  Similarity=0.203  Sum_probs=82.5

Q ss_pred             ccceEeeccCcCCCcc-c-ccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccchh-hhccCCCcCe
Q 019416          206 ELRELEIWDCLELEFL-P-EDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSLPH-QIHKATSLQD  281 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l-~-~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~  281 (341)
                      .++.|+++++ .+..+ + ..+..+++|+.|+++++ .++.++.. ...+++|++|+++++ .++.++. .+..+++|++
T Consensus        33 ~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~  109 (220)
T 2v70_A           33 YTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFEGASGVNEILLTSN-RLENVQHKMFKGLESLKT  109 (220)
T ss_dssp             TCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSS-CCCCCCGGGGTTCSSCCE
T ss_pred             CCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhCCCCCCCEEECCCC-ccCccCHhHhcCCcCCCE
Confidence            3778888875 34444 2 34677888888888875 36666552 333568888888875 4666654 4777888888


Q ss_pred             EeecCCCCCccCCCC--CCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          282 LSVSGCPSLMSFPHG--GLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       282 L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      |+++++ .+..++..  ...++|++|+++++......+. .+..+++|+.|++++
T Consensus       110 L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~  162 (220)
T 2v70_A          110 LMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTVAPG-AFDTLHSLSTLNLLA  162 (220)
T ss_dssp             EECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCBCTT-TTTTCTTCCEEECCS
T ss_pred             EECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEECHH-HhcCCCCCCEEEecC
Confidence            888774 56666443  2357888888877643332233 367788888888877

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.79  E-value=6.6e-09  Score=81.91  Aligned_cols=120  Identities=20%  Similarity=0.126  Sum_probs=85.9

Q ss_pred             CCCCcCeEEcCCCCCC-ccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCcc-ccCCC-CCCCc
Q 019416           38 TGETLESLEIDNLSSL-ASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSN-SKQDY-FPTTL  112 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~-~~~~~-~~~~L  112 (341)
                      ..++|++|++++|... ..+|..+..+++|++|++++| .+..+  +..  +++|++|++++| .+.. ++... .+++|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~--l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L   90 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSIANLPK--LNKLKKLELSDN-RVSGGLEVLAEKCPNL   90 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCCTTCCC--CTTCCEEECCSS-CCCSCTHHHHHHCTTC
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCchhhhc--CCCCCEEECCCC-cccchHHHHhhhCCCC
Confidence            4578999999987543 267776788899999999985 55554  778  899999999886 4444 55432 37889


Q ss_pred             cEEEEeCCCChHHHHHHhh--hhcc--cccceEeecCCCCccccCC-----CCCccccceEEee
Q 019416          113 KRLKICDCTNAELILKVLM--DQKG--LALESLEVDGCSSLFSLPI-----NQLPATLRHLRIV  167 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~--~~~~--~~L~~L~l~~~~~l~~l~~-----~~~~~~L~~L~l~  167 (341)
                      ++|++++|.. ..    ++  ..+.  ++|++|+++++ .++.++.     ...+++|+.|+++
T Consensus        91 ~~L~ls~N~i-~~----~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           91 THLNLSGNKI-KD----LSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CEEECTTSCC-CS----HHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CEEECCCCcC-CC----hHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            9999999873 33    32  3343  88999999884 6766665     1445778887764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.75  E-value=1.6e-07  Score=84.12  Aligned_cols=97  Identities=14%  Similarity=0.134  Sum_probs=44.1

Q ss_pred             CCcCeEEeecCCCCceecCCCCC-CCCcceEecccCcccccchh-hhccCCCcC-eEeecCCCCCccCCCCCC--CCCcc
Q 019416          229 TDLNLLSISNCPSLESFPEGGLP-NTSLTSLLISECENLMSLPH-QIHKATSLQ-DLSVSGCPSLMSFPHGGL--PPNLI  303 (341)
Q Consensus       229 ~~L~~L~l~~c~~l~~~~~~~~~-~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~-~L~l~~c~~l~~~~~~~~--~~~L~  303 (341)
                      ++|+.+++.++ .++.++...+. +++|++|++.+.  ++.++. .+..+++|+ .+.+.+  .++.++...|  .++|+
T Consensus       226 ~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          226 PNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             TTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred             CCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence            45555555442 24444443221 345555555541  444443 345555555 555543  4445544433  34555


Q ss_pred             EEEeecCCCCCccccccccCCCceeEEE
Q 019416          304 SLGIIDCENLIPLSQWELHKLKHLNKYT  331 (341)
Q Consensus       304 ~L~l~~c~~~~~~~~~~i~~~~~L~~l~  331 (341)
                      .+++.+. .++..+...+..+++|+.++
T Consensus       301 ~l~l~~n-~i~~I~~~aF~~~~~L~~ly  327 (329)
T 3sb4_A          301 YVLATGD-KITTLGDELFGNGVPSKLIY  327 (329)
T ss_dssp             EEEECSS-CCCEECTTTTCTTCCCCEEE
T ss_pred             EEEeCCC-ccCccchhhhcCCcchhhhc
Confidence            5555332 23322222345556666554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.66  E-value=2.3e-08  Score=81.17  Aligned_cols=123  Identities=11%  Similarity=0.029  Sum_probs=90.3

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCC-CCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCC--CCCC
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAA-TTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPT  110 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~  110 (341)
                      +..+++|++|++++| .++.++. +..+ ++|+.|++++| .+..+  +..  +++|++|++++| .+..++..  ..++
T Consensus        15 ~~~~~~L~~L~l~~n-~l~~i~~-~~~~~~~L~~L~Ls~N-~l~~~~~l~~--l~~L~~L~Ls~N-~l~~~~~~~~~~l~   88 (176)
T 1a9n_A           15 YTNAVRDRELDLRGY-KIPVIEN-LGATLDQFDAIDFSDN-EIRKLDGFPL--LRRLKTLLVNNN-RICRIGEGLDQALP   88 (176)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCC-GGGGTTCCSEEECCSS-CCCEECCCCC--CSSCCEEECCSS-CCCEECSCHHHHCT
T ss_pred             cCCcCCceEEEeeCC-CCchhHH-hhhcCCCCCEEECCCC-CCCccccccc--CCCCCEEECCCC-cccccCcchhhcCC
Confidence            456889999999987 4556644 4444 49999999984 56655  788  999999999986 66666642  4478


Q ss_pred             CccEEEEeCCCChHHHHHHhhh--hcc--cccceEeecCCCCccccCCC-----CCccccceEEeeccC
Q 019416          111 TLKRLKICDCTNAELILKVLMD--QKG--LALESLEVDGCSSLFSLPIN-----QLPATLRHLRIVNCM  170 (341)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~~--~~~--~~L~~L~l~~~~~l~~l~~~-----~~~~~L~~L~l~~~~  170 (341)
                      +|++|++++|. +..    +|.  .+.  ++|+.|+++++ .+..++..     ..+++|+.|+++++.
T Consensus        89 ~L~~L~L~~N~-i~~----~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           89 DLTELILTNNS-LVE----LGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TCCEEECCSCC-CCC----GGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCEEECCCCc-CCc----chhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            99999999986 444    555  333  89999999884 56666542     345788888887753

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.66  E-value=3.5e-08  Score=80.13  Aligned_cols=124  Identities=13%  Similarity=0.195  Sum_probs=81.4

Q ss_pred             cccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhh-ccCCCcCeEe
Q 019416          205 LELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQI-HKATSLQDLS  283 (341)
Q Consensus       205 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l-~~l~~L~~L~  283 (341)
                      ++|+.|+++++ .+..++......++|+.|+++++ .++.+ .....+++|++|+++++ .++.+|..+ ..+++|++|+
T Consensus        19 ~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N-~l~~~-~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           19 VRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKL-DGFPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEE-CCCCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEE
T ss_pred             CCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCC-CCCcc-cccccCCCCCEEECCCC-cccccCcchhhcCCCCCEEE
Confidence            35888888876 44555443333348888888886 45555 33333468888888885 577777544 7788888888


Q ss_pred             ecCCCCCccCCC--C-CCCCCccEEEeecCCCCCccccc---cccCCCceeEEEEeC
Q 019416          284 VSGCPSLMSFPH--G-GLPPNLISLGIIDCENLIPLSQW---ELHKLKHLNKYTILG  334 (341)
Q Consensus       284 l~~c~~l~~~~~--~-~~~~~L~~L~l~~c~~~~~~~~~---~i~~~~~L~~l~l~~  334 (341)
                      ++++ .+..++.  . ...++|++|++++++... .+.+   .+..+++|+.+++++
T Consensus        95 L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~l~~L~~Ld~~~  149 (176)
T 1a9n_A           95 LTNN-SLVELGDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLDFQK  149 (176)
T ss_dssp             CCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEETTEE
T ss_pred             CCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCC-cHhHHHHHHHHCCccceeCCCc
Confidence            8774 5666664  2 346788888888875432 2221   356778888888776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.65  E-value=1e-07  Score=85.44  Aligned_cols=95  Identities=11%  Similarity=0.112  Sum_probs=48.1

Q ss_pred             cccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcc-eEecccCcccccch-hhhccCCCcC
Q 019416          205 LELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLT-SLLISECENLMSLP-HQIHKATSLQ  280 (341)
Q Consensus       205 ~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~-~L~l~~~~~l~~l~-~~l~~l~~L~  280 (341)
                      ++|+.+++.++ .++.++ ..|.++++|+.+++.+.  ++.++...+ .+++|+ .+.+.+  .++.++ ..+..+++|+
T Consensus       226 ~~L~~l~L~~n-~i~~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          226 PNLVSLDISKT-NATTIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             TTCCEEECTTB-CCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred             CCCeEEECCCC-CcceecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence            34666666543 244443 34555566666666552  555554332 234565 666654  355554 2455666666


Q ss_pred             eEeecCCCCCccCCCCCC--CCCccEE
Q 019416          281 DLSVSGCPSLMSFPHGGL--PPNLISL  305 (341)
Q Consensus       281 ~L~l~~c~~l~~~~~~~~--~~~L~~L  305 (341)
                      .+++.+ +.++.++...|  .++|+.+
T Consensus       301 ~l~l~~-n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          301 YVLATG-DKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EEEECS-SCCCEECTTTTCTTCCCCEE
T ss_pred             EEEeCC-CccCccchhhhcCCcchhhh
Confidence            666643 34555555433  2344444

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.64  E-value=2.7e-06  Score=78.30  Aligned_cols=80  Identities=18%  Similarity=0.315  Sum_probs=37.5

Q ss_pred             ccCCCCCCcCeEEeecCCCCceecCCCCC-CCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCC---C
Q 019416          223 EDMHNFTDLNLLSISNCPSLESFPEGGLP-NTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHG---G  297 (341)
Q Consensus       223 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~~-~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~---~  297 (341)
                      ..|.++++|+.+++.+  .++.+....+. +++|+.+.+..  +++.+.. .+..+ +|+.+.+.+. .+..++..   +
T Consensus       294 ~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n-~~~~l~~~~F~~  367 (401)
T 4fdw_A          294 YCLEGCPKLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT-TPPQVFEKVWYG  367 (401)
T ss_dssp             TTTTTCTTCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS-SCCBCCCSSCCC
T ss_pred             HHhhCCccCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC-CCcccccccccC
Confidence            3445555566655553  34444443332 24555555543  2444432 34555 5666666542 33333333   2


Q ss_pred             CCCCccEEEee
Q 019416          298 LPPNLISLGII  308 (341)
Q Consensus       298 ~~~~L~~L~l~  308 (341)
                      ++.++..+.+.
T Consensus       368 ~~~~l~~l~vp  378 (401)
T 4fdw_A          368 FPDDITVIRVP  378 (401)
T ss_dssp             SCTTCCEEEEC
T ss_pred             CCCCccEEEeC
Confidence            23345555553

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.61  E-value=4e-07  Score=75.06  Aligned_cols=102  Identities=24%  Similarity=0.370  Sum_probs=81.7

Q ss_pred             ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccchh-hhccCCCcCeEe
Q 019416          206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSLPH-QIHKATSLQDLS  283 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~  283 (341)
                      +++.|+++++ .+..+|..+..+++|+.|+++++ .++.++.. ...+++|++|+++++ .++.++. .+..+++|+.|+
T Consensus        32 ~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~  108 (193)
T 2wfh_A           32 DVTELYLDGN-QFTLVPKELSNYKHLTLIDLSNN-RISTLSNQSFSNMTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLS  108 (193)
T ss_dssp             TCCEEECCSS-CCCSCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCC-cCchhHHHhhcccCCCEEECCCC-cCCEeCHhHccCCCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEE
Confidence            5999999985 56788888999999999999996 46666553 334579999999995 5887764 688999999999


Q ss_pred             ecCCCCCccCCCCCC--CCCccEEEeecCC
Q 019416          284 VSGCPSLMSFPHGGL--PPNLISLGIIDCE  311 (341)
Q Consensus       284 l~~c~~l~~~~~~~~--~~~L~~L~l~~c~  311 (341)
                      +++ +.+..++...+  +++|+.|++.+++
T Consensus       109 L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          109 LHG-NDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             CCS-SCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             CCC-CCCCeeChhhhhcCccccEEEeCCCC
Confidence            988 57888877533  6899999998864

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.56  E-value=1.5e-07  Score=90.71  Aligned_cols=113  Identities=18%  Similarity=0.172  Sum_probs=87.0

Q ss_pred             CcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEE
Q 019416           41 TLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKI  117 (341)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l  117 (341)
                      .|++|++++| .++.+|. +..+++|+.|++++| .+..+   ++.  +++|+.|++++| .+..+|..+.+++|+.|++
T Consensus       442 ~L~~L~Ls~n-~l~~lp~-~~~l~~L~~L~Ls~N-~l~~lp~~~~~--l~~L~~L~Ls~N-~l~~lp~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHK-DLTVLCH-LEQLLLVTHLDLSHN-RLRALPPALAA--LRCLEVLQASDN-ALENVDGVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTS-CCSSCCC-GGGGTTCCEEECCSS-CCCCCCGGGGG--CTTCCEEECCSS-CCCCCGGGTTCSSCCEEEC
T ss_pred             CceEEEecCC-CCCCCcC-ccccccCcEeecCcc-cccccchhhhc--CCCCCEEECCCC-CCCCCcccCCCCCCcEEEC
Confidence            5889999986 6667776 888999999999984 55555   888  999999999885 6777886667899999999


Q ss_pred             eCCCChHHHHHHh--hhhcc--cccceEeecCCCCccccCCC-----CCccccceEE
Q 019416          118 CDCTNAELILKVL--MDQKG--LALESLEVDGCSSLFSLPIN-----QLPATLRHLR  165 (341)
Q Consensus       118 ~~~~~~~~~~~~~--~~~~~--~~L~~L~l~~~~~l~~l~~~-----~~~~~L~~L~  165 (341)
                      ++|. +..    +  |..++  ++|+.|++++ +.++..+..     ..+++|+.|+
T Consensus       516 s~N~-l~~----~~~p~~l~~l~~L~~L~L~~-N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          516 CNNR-LQQ----SAAIQPLVSCPRLVLLNLQG-NSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             CSSC-CCS----SSTTGGGGGCTTCCEEECTT-SGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCC-CCC----CCCcHHHhcCCCCCEEEecC-CcCCCCccHHHHHHHHCcccCccC
Confidence            9986 344    4  66666  8999999988 466666543     1256777775

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.55  E-value=5.3e-07  Score=74.18  Aligned_cols=102  Identities=16%  Similarity=0.153  Sum_probs=59.2

Q ss_pred             ccceEeeccCcCCCcccc--cCCCCCCcCeEEeecCCCCceec-CCCCCCCCcceEecccCcccccchh-hhccCCCcCe
Q 019416          206 ELRELEIWDCLELEFLPE--DMHNFTDLNLLSISNCPSLESFP-EGGLPNTSLTSLLISECENLMSLPH-QIHKATSLQD  281 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~~--~~~~l~~L~~L~l~~c~~l~~~~-~~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~  281 (341)
                      +++.|+++++ .+..++.  .+..+++|++|+++++. ++.++ .....+++|++|+++++ .++.++. .+..+++|++
T Consensus        30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~  106 (192)
T 1w8a_A           30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKT  106 (192)
T ss_dssp             TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCE
T ss_pred             CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC-CCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCE
Confidence            4777777764 3444443  25667777777777753 44442 23333457777777764 4665543 3666777777


Q ss_pred             EeecCCCCCccCCCC--CCCCCccEEEeecCC
Q 019416          282 LSVSGCPSLMSFPHG--GLPPNLISLGIIDCE  311 (341)
Q Consensus       282 L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~  311 (341)
                      |+++++ .+..+...  ...++|++|++++++
T Consensus       107 L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          107 LNLYDN-QISCVMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             EECCSS-CCCEECTTSSTTCTTCCEEECTTCC
T ss_pred             EECCCC-cCCeeCHHHhhcCCCCCEEEeCCCC
Confidence            777663 45544332  235677777776654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.51  E-value=1.5e-06  Score=70.25  Aligned_cols=105  Identities=30%  Similarity=0.323  Sum_probs=73.6

Q ss_pred             cccceEeeccCcCCCccc-ccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchh-hhccCCCcCe
Q 019416          205 LELRELEIWDCLELEFLP-EDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQD  281 (341)
Q Consensus       205 ~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~  281 (341)
                      ++|+.|+++++. +..++ ..+..+++|++|+++++ .+..++... ..+++|++|+++++ .++.++. .+..+++|++
T Consensus        28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYLHEN-KLQSLPNGVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCE
T ss_pred             CCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEECCCC-CccccCHHHhhCCcccCE
Confidence            458888888854 44554 45677888888888885 456565533 34568888888885 5777765 3577888888


Q ss_pred             EeecCCCCCccCCCCC--CCCCccEEEeecCCCC
Q 019416          282 LSVSGCPSLMSFPHGG--LPPNLISLGIIDCENL  313 (341)
Q Consensus       282 L~l~~c~~l~~~~~~~--~~~~L~~L~l~~c~~~  313 (341)
                      |+++++ .++.++...  ..++|++|++++++..
T Consensus       105 L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~  137 (177)
T 2o6r_A          105 LALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWD  137 (177)
T ss_dssp             EECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             EECcCC-cceEeCHHHhcCCcccCEEEecCCCee
Confidence            888874 677776643  3578888888887543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.51  E-value=5.4e-07  Score=74.28  Aligned_cols=98  Identities=12%  Similarity=0.068  Sum_probs=73.8

Q ss_pred             CCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCCc
Q 019416           39 GETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTTL  112 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L  112 (341)
                      .++|++|+++++ .++.+|..+..+++|+.|++++ +.+..+    +..  +++|++|+++++ .+..++.  ...+++|
T Consensus        30 ~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~--l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L  104 (193)
T 2wfh_A           30 PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSN--MTQLLTLILSYN-RLRCIPPRTFDGLKSL  104 (193)
T ss_dssp             CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTT--CTTCCEEECCSS-CCCBCCTTTTTTCTTC
T ss_pred             CCCCCEEECCCC-cCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccC--CCCCCEEECCCC-ccCEeCHHHhCCCCCC
Confidence            367999999975 5667777788889999999998 455554    777  899999999885 6666654  3347899


Q ss_pred             cEEEEeCCCChHHHHHHhhhh-cc--cccceEeecCC
Q 019416          113 KRLKICDCTNAELILKVLMDQ-KG--LALESLEVDGC  146 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~  146 (341)
                      ++|++++|. +..    +|.. +.  ++|+.|++.++
T Consensus       105 ~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~L~~N  136 (193)
T 2wfh_A          105 RLLSLHGND-ISV----VPEGAFNDLSALSHLAIGAN  136 (193)
T ss_dssp             CEEECCSSC-CCB----CCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCC-CCe----eChhhhhcCccccEEEeCCC
Confidence            999999986 444    5543 22  88899998874

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.46  E-value=3e-05  Score=71.33  Aligned_cols=248  Identities=10%  Similarity=0.145  Sum_probs=153.6

Q ss_pred             CCCcCeEEcCCCCCCcccccc-ccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCC--CCC
Q 019416           39 GETLESLEIDNLSSLASFLRS-ELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYF--PTT  111 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~  111 (341)
                      +..++.+.+.+  .++.++.. +.. .+|+.+.+.+.  +..+    |..  + +|+.+.+.+  .+..++...|  +++
T Consensus       112 ~~~l~~i~ip~--~i~~I~~~aF~~-~~L~~i~l~~~--i~~I~~~aF~~--~-~L~~i~lp~--~l~~I~~~aF~~c~~  181 (401)
T 4fdw_A          112 LKGYNEIILPN--SVKSIPKDAFRN-SQIAKVVLNEG--LKSIGDMAFFN--S-TVQEIVFPS--TLEQLKEDIFYYCYN  181 (401)
T ss_dssp             CSSCSEEECCT--TCCEECTTTTTT-CCCSEEECCTT--CCEECTTTTTT--C-CCCEEECCT--TCCEECSSTTTTCTT
T ss_pred             cCCccEEEECC--ccCEehHhhccc-CCccEEEeCCC--ccEECHHhcCC--C-CceEEEeCC--CccEehHHHhhCccc
Confidence            46677777763  45555443 444 36888887652  3333    444  3 578887764  5666655444  677


Q ss_pred             ccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCC
Q 019416          112 LKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSV  187 (341)
Q Consensus       112 L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l  187 (341)
                      |+.+++.++. +..    ++...+  .+|+.+.+..  .++.++..  ..+++|+.+.+..  +++.++..         
T Consensus       182 L~~l~l~~n~-l~~----I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~---------  243 (401)
T 4fdw_A          182 LKKADLSKTK-ITK----LPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQE---------  243 (401)
T ss_dssp             CCEEECTTSC-CSE----ECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEECCT--TCCEECTT---------
T ss_pred             CCeeecCCCc-ceE----echhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEecCC--CccCcccc---------
Confidence            8888887653 333    444444  7777777753  46666655  3456778777764  34444321         


Q ss_pred             CcCCCcccccccccccccccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCC----CceecCCCC-CCCCcceEecc
Q 019416          188 VGPEGESSLENMTSSHTLELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPS----LESFPEGGL-PNTSLTSLLIS  261 (341)
Q Consensus       188 ~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~----l~~~~~~~~-~~~~L~~L~l~  261 (341)
                             ++..      .+|+.+.+.+  .++.+ ...|..+++|+.+.+.+...    ...++...+ .+++|+.+.+.
T Consensus       244 -------aF~~------~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~  308 (401)
T 4fdw_A          244 -------AFRE------SGITTVKLPN--GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP  308 (401)
T ss_dssp             -------TTTT------CCCSEEEEET--TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC
T ss_pred             -------cccc------CCccEEEeCC--CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC
Confidence                   1111      2488888843  45566 36778899999999976321    123544332 35689999998


Q ss_pred             cCcccccchh-hhccCCCcCeEeecCCCCCccCCCCCCC-CCccEEEeecCCCCCccccccccCC-CceeEEEEeC
Q 019416          262 ECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHGGLP-PNLISLGIIDCENLIPLSQWELHKL-KHLNKYTILG  334 (341)
Q Consensus       262 ~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~~-~~L~~L~l~~c~~~~~~~~~~i~~~-~~L~~l~l~~  334 (341)
                      +  .++.++. .+.++++|+.+.+..  .++.++...|- .+|+.+++.++.--. .....+..+ .+++.+++..
T Consensus       309 ~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~n~~~~-l~~~~F~~~~~~l~~l~vp~  379 (401)
T 4fdw_A          309 E--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEGTTPPQ-VFEKVWYGFPDDITVIRVPA  379 (401)
T ss_dssp             T--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECCSSCCB-CCCSSCCCSCTTCCEEEECG
T ss_pred             C--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcCCCCcc-cccccccCCCCCccEEEeCH
Confidence            4  4777764 678899999999954  57788776441 289999998764333 211134555 4677887764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.44  E-value=1.3e-06  Score=71.93  Aligned_cols=81  Identities=15%  Similarity=0.206  Sum_probs=41.0

Q ss_pred             cccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccc-hhhhccCCCcCeE
Q 019416          205 LELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSL-PHQIHKATSLQDL  282 (341)
Q Consensus       205 ~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L  282 (341)
                      ++|+.|+++++.-....|..+..+++|++|+++++ .+..++... ..+++|++|+++++ .++.+ |..+..+++|++|
T Consensus        54 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  131 (192)
T 1w8a_A           54 PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDN-QISCVMPGSFEHLNSLTSL  131 (192)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSS-CCCEECTTSSTTCTTCCEE
T ss_pred             CCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCC-cCCeeCHHHhhcCCCCCEE
Confidence            35666666654322222455555666666666654 244443322 22346666666653 34433 4445555666666


Q ss_pred             eecCC
Q 019416          283 SVSGC  287 (341)
Q Consensus       283 ~l~~c  287 (341)
                      +++++
T Consensus       132 ~L~~N  136 (192)
T 1w8a_A          132 NLASN  136 (192)
T ss_dssp             ECTTC
T ss_pred             EeCCC
Confidence            66553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.44  E-value=2.7e-06  Score=68.81  Aligned_cols=121  Identities=25%  Similarity=0.257  Sum_probs=79.8

Q ss_pred             cceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchh-hhccCCCcCeEee
Q 019416          207 LRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQDLSV  284 (341)
Q Consensus       207 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l  284 (341)
                      .+.+++.+ ..+..+|..+  .++|+.|+++++. +..++... ..+++|++|+++++ .++.++. .+..+++|++|++
T Consensus         9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             TTEEECCS-SCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEecC-CCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEECCCC-cceEeChhHccCCCccCEEEC
Confidence            45566655 3455565443  3678888888854 55555533 23568888888875 5777765 3577888888888


Q ss_pred             cCCCCCccCCCCC--CCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          285 SGCPSLMSFPHGG--LPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       285 ~~c~~l~~~~~~~--~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      +++ .++.++...  ..++|++|+++++ .++..+...+..+++|+++++++
T Consensus        84 ~~N-~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~  133 (177)
T 2o6r_A           84 HEN-KLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHT  133 (177)
T ss_dssp             CSS-CCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCS
T ss_pred             CCC-CccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecC
Confidence            774 566666542  3578888888876 34444433356778888888887

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.42  E-value=1.3e-07  Score=76.25  Aligned_cols=65  Identities=17%  Similarity=0.298  Sum_probs=31.5

Q ss_pred             ccCCCcCeEeecCCCCCccCCCCCC------CCCccEEEeecCCCCCc-cccccccCCCceeEEEEeCCCCCCC
Q 019416          274 HKATSLQDLSVSGCPSLMSFPHGGL------PPNLISLGIIDCENLIP-LSQWELHKLKHLNKYTILGGLPVLE  340 (341)
Q Consensus       274 ~~l~~L~~L~l~~c~~l~~~~~~~~------~~~L~~L~l~~c~~~~~-~~~~~i~~~~~L~~l~l~~~C~~l~  340 (341)
                      ..+++|++|++++|..+++.....+      .++|++|++++|.+++. +.. .+.++++|++|++++ |++++
T Consensus        82 ~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~-~L~~~~~L~~L~L~~-c~~It  153 (176)
T 3e4g_A           82 EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSD-LPGVK  153 (176)
T ss_dssp             TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHH-HGGGCTTCCEEEEES-CTTCC
T ss_pred             cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHH-HHhcCCCCCEEECCC-CCCCC
Confidence            4455555555555555443221111      12456666666655551 111 234556666666666 65554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.36  E-value=4.4e-07  Score=90.06  Aligned_cols=103  Identities=19%  Similarity=0.198  Sum_probs=55.0

Q ss_pred             ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeec
Q 019416          206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVS  285 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~  285 (341)
                      .|+.|+++++. +..+|..+..+++|+.|+++++ .+..+|.....+++|++|+++++ .++.+|..+..+++|++|+++
T Consensus       225 ~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~L~  301 (727)
T 4b8c_D          225 LWHALDLSNLQ-IFNISANIFKYDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCFQLKYFYFF  301 (727)
T ss_dssp             CCCEEECTTSC-CSCCCGGGGGCCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGTTCSEEECC
T ss_pred             CCcEEECCCCC-CCCCChhhcCCCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCCCCCEEECC
Confidence            45666666543 3455555555566666666654 23444443333446666666654 355555555666666666665


Q ss_pred             CCCCCccCCCC-CCCCCccEEEeecCCC
Q 019416          286 GCPSLMSFPHG-GLPPNLISLGIIDCEN  312 (341)
Q Consensus       286 ~c~~l~~~~~~-~~~~~L~~L~l~~c~~  312 (341)
                      +| .+..+|.. +.+++|++|+++++..
T Consensus       302 ~N-~l~~lp~~~~~l~~L~~L~L~~N~l  328 (727)
T 4b8c_D          302 DN-MVTTLPWEFGNLCNLQFLGVEGNPL  328 (727)
T ss_dssp             SS-CCCCCCSSTTSCTTCCCEECTTSCC
T ss_pred             CC-CCCccChhhhcCCCccEEeCCCCcc
Confidence            53 45555543 2345566666655543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.26  E-value=1.1e-06  Score=87.12  Aligned_cols=81  Identities=25%  Similarity=0.281  Sum_probs=57.3

Q ss_pred             ccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEe
Q 019416          204 TLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLS  283 (341)
Q Consensus       204 ~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~  283 (341)
                      +++|+.|+++++ .+..+|..+..+++|+.|++++|. +..+|.....+++|++|+++++ .++.+|..+..+++|+.|+
T Consensus       246 l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L~~L~  322 (727)
T 4b8c_D          246 YDFLTRLYLNGN-SLTELPAEIKNLSNLRVLDLSHNR-LTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNLQFLG  322 (727)
T ss_dssp             CCSCSCCBCTTS-CCSCCCGGGGGGTTCCEEECTTSC-CSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTCCCEE
T ss_pred             CCCCCEEEeeCC-cCcccChhhhCCCCCCEEeCcCCc-CCccChhhcCCCCCCEEECCCC-CCCccChhhhcCCCccEEe
Confidence            446777888775 445777777777788888887754 5566655444567888888775 5777777777778888888


Q ss_pred             ecCC
Q 019416          284 VSGC  287 (341)
Q Consensus       284 l~~c  287 (341)
                      ++++
T Consensus       323 L~~N  326 (727)
T 4b8c_D          323 VEGN  326 (727)
T ss_dssp             CTTS
T ss_pred             CCCC
Confidence            8764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.22  E-value=9.4e-05  Score=67.72  Aligned_cols=58  Identities=5%  Similarity=0.077  Sum_probs=39.6

Q ss_pred             CCCCCCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCC-CCchhh-hcccCCCCcceEeeec
Q 019416           35 GIRTGETLESLEIDNLSSLASFLR-SELAATTVKQLKINKC-PDLEVL-LHRMAYTSLEYLEFSS   96 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~-~~l~~~-~~~~~l~~L~~L~l~~   96 (341)
                      .|.++.+|+.+.+..  .++.++. ++.++.+|+.+++.+. ..+... +..  +.+|+.+.+..
T Consensus        66 AF~~c~~L~~i~lp~--~i~~I~~~aF~~c~~L~~i~lp~~l~~I~~~aF~~--c~~L~~i~~p~  126 (394)
T 4fs7_A           66 AFQGCRKVTEIKIPS--TVREIGEFAFENCSKLEIINIPDSVKMIGRCTFSG--CYALKSILLPL  126 (394)
T ss_dssp             TTTTCTTEEEEECCT--TCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTT--CTTCCCCCCCT
T ss_pred             HhhCCCCceEEEeCC--CccCcchhHhhCCCCCcEEEeCCCceEccchhhcc--cccchhhcccC
Confidence            477789999999974  4677754 4677899999999652 112222 666  77777776643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.21  E-value=1.1e-05  Score=65.08  Aligned_cols=98  Identities=20%  Similarity=0.277  Sum_probs=49.4

Q ss_pred             ceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccchhh-hccCCCcCeEeec
Q 019416          208 RELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSLPHQ-IHKATSLQDLSVS  285 (341)
Q Consensus       208 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l~  285 (341)
                      +.+++++ ..++.+|..+.  +.|+.|+++++. +..++.. ...+++|++|+++++ +++.+|.. +..+++|+.|+++
T Consensus        15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SEEECCS-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             cEEEeCC-CCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECC
Confidence            3444444 23445554442  556666666542 4434332 223446666666653 45555543 3556666666665


Q ss_pred             CCCCCccCCCC--CCCCCccEEEeecCC
Q 019416          286 GCPSLMSFPHG--GLPPNLISLGIIDCE  311 (341)
Q Consensus       286 ~c~~l~~~~~~--~~~~~L~~L~l~~c~  311 (341)
                      + +.++.++..  ...++|++|++.+++
T Consensus        90 ~-N~l~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           90 D-NHLKSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             S-SCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred             C-CccceeCHHHhccccCCCEEEeCCCC
Confidence            5 345555543  224566666666543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.19  E-value=1.4e-05  Score=64.28  Aligned_cols=99  Identities=22%  Similarity=0.252  Sum_probs=57.6

Q ss_pred             cceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCC-CCCCCCcceEecccCcccccchhh-hccCCCcCeEee
Q 019416          207 LRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEG-GLPNTSLTSLLISECENLMSLPHQ-IHKATSLQDLSV  284 (341)
Q Consensus       207 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~-~~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l  284 (341)
                      .+.+++++ ..++.+|..+  .+.|+.|+++++ .+..++.. ...+++|++|+++++ +++.++.. +..+++|++|++
T Consensus        11 ~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           11 GTTVDCSG-KSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             TTEEECTT-SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEEEeCC-CCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEEC
Confidence            45666665 3455566544  256777777764 34444332 223457777777764 46666543 466777777777


Q ss_pred             cCCCCCccCCCC--CCCCCccEEEeecCC
Q 019416          285 SGCPSLMSFPHG--GLPPNLISLGIIDCE  311 (341)
Q Consensus       285 ~~c~~l~~~~~~--~~~~~L~~L~l~~c~  311 (341)
                      ++ +.++.++..  ...++|++|++++++
T Consensus        86 ~~-N~l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           86 ND-NQLKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CS-SCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CC-CccCEeCHHHhcCCCCCCEEEeCCCC
Confidence            66 356666554  234667777776653

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.18  E-value=7.3e-06  Score=66.21  Aligned_cols=80  Identities=23%  Similarity=0.314  Sum_probs=65.8

Q ss_pred             ccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchhh-hccCCCcCeE
Q 019416          206 ELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPHQ-IHKATSLQDL  282 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L  282 (341)
                      +|+.|+++++. +..+ |..+..+++|+.|+++++ .+..++... ..+++|++|+++++ .++.+|.. +..+++|+.|
T Consensus        34 ~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L  110 (174)
T 2r9u_A           34 DKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVFDKLTQLTQLDLNDN-HLKSIPRGAFDNLKSLTHI  110 (174)
T ss_dssp             TCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEE
T ss_pred             CCcEEEeCCCC-ccccCHHHhcCCcCCCEEECCCC-CCCccChhHhCCcchhhEEECCCC-ccceeCHHHhccccCCCEE
Confidence            59999999965 4444 678899999999999996 577777754 34679999999985 68888875 8899999999


Q ss_pred             eecCCC
Q 019416          283 SVSGCP  288 (341)
Q Consensus       283 ~l~~c~  288 (341)
                      ++++++
T Consensus       111 ~L~~N~  116 (174)
T 2r9u_A          111 YLYNNP  116 (174)
T ss_dssp             ECCSSC
T ss_pred             EeCCCC
Confidence            998853

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.13  E-value=1.7e-06  Score=69.70  Aligned_cols=10  Identities=0%  Similarity=0.272  Sum_probs=4.6

Q ss_pred             CccEEeccCC
Q 019416           65 TVKQLKINKC   74 (341)
Q Consensus        65 ~L~~L~l~~~   74 (341)
                      +|++|++++|
T Consensus        62 ~L~~LDLs~~   71 (176)
T 3e4g_A           62 KIQAIDATDS   71 (176)
T ss_dssp             CEEEEEEESC
T ss_pred             eEeEEeCcCC
Confidence            4444444444

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.13  E-value=1.1e-05  Score=64.80  Aligned_cols=80  Identities=26%  Similarity=0.370  Sum_probs=65.1

Q ss_pred             ccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchh-hhccCCCcCeE
Q 019416          206 ELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQDL  282 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L  282 (341)
                      +++.|+++++. +..+ |..+..+++|++|+++++ .++.++... ..+++|++|+++++ .++.++. .+..+++|+.|
T Consensus        31 ~l~~L~L~~N~-i~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L  107 (170)
T 3g39_A           31 TTQVLYLYDNQ-ITKLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVFDKLTQLTQLSLNDN-QLKSIPRGAFDNLKSLTHI  107 (170)
T ss_dssp             TCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred             CCcEEEcCCCc-CCccChhhhcCcccCCEEECCCC-CcCccChhhccCCCCCCEEECCCC-ccCEeCHHHhcCCCCCCEE
Confidence            59999999864 4555 677899999999999996 577777654 34679999999995 6888876 48899999999


Q ss_pred             eecCCC
Q 019416          283 SVSGCP  288 (341)
Q Consensus       283 ~l~~c~  288 (341)
                      ++++++
T Consensus       108 ~L~~N~  113 (170)
T 3g39_A          108 WLLNNP  113 (170)
T ss_dssp             ECCSSC
T ss_pred             EeCCCC
Confidence            998853

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.08  E-value=3.6e-08  Score=81.62  Aligned_cols=123  Identities=17%  Similarity=0.166  Sum_probs=83.2

Q ss_pred             cccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeE
Q 019416          203 HTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDL  282 (341)
Q Consensus       203 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L  282 (341)
                      .+++|+.|+++++ .+..+| .+..+++|+.|++++|. +..++.....+++|++|+++++ .++.+| .+..+++|+.|
T Consensus        46 ~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N-~l~~l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           46 TLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEE-ECCCHH-HHHHHHHSSEE
T ss_pred             cCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCC-cCCcCC-ccccCCCCCEE
Confidence            4557888988875 455566 77778889999998863 4455442222368899999885 577777 67788889999


Q ss_pred             eecCCCCCccCCC---CCCCCCccEEEeecCCCCCccc---------cccccCCCceeEEE
Q 019416          283 SVSGCPSLMSFPH---GGLPPNLISLGIIDCENLIPLS---------QWELHKLKHLNKYT  331 (341)
Q Consensus       283 ~l~~c~~l~~~~~---~~~~~~L~~L~l~~c~~~~~~~---------~~~i~~~~~L~~l~  331 (341)
                      +++++ .+..++.   -...++|++|++.+++.....+         ...+..+++|+.|+
T Consensus       121 ~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          121 YMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             ECCCC-cCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            99874 5665443   1446789999998874322211         11256778888776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.07  E-value=1.9e-08  Score=83.33  Aligned_cols=80  Identities=13%  Similarity=0.048  Sum_probs=38.2

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCCCCCCc
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTL  112 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L  112 (341)
                      +..+++|++|++++| .++.+| .+..+++|+.|++++| .+..+   +..  +++|++|++++| .+..++....+++|
T Consensus        44 ~~~l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n-~l~~l~~~~~~--~~~L~~L~L~~N-~l~~l~~~~~l~~L  117 (198)
T 1ds9_A           44 LSTLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAV--ADTLEELWISYN-QIASLSGIEKLVNL  117 (198)
T ss_dssp             HHHTTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEE-EECSCSSHHHH--HHHCSEEEEEEE-ECCCHHHHHHHHHS
T ss_pred             HhcCCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCC-Ccccccchhhc--CCcCCEEECcCC-cCCcCCccccCCCC
Confidence            344555555555543 333344 3444555555555552 33332   333  455555555553 34334333334555


Q ss_pred             cEEEEeCCC
Q 019416          113 KRLKICDCT  121 (341)
Q Consensus       113 ~~L~l~~~~  121 (341)
                      ++|++++|.
T Consensus       118 ~~L~l~~N~  126 (198)
T 1ds9_A          118 RVLYMSNNK  126 (198)
T ss_dssp             SEEEESEEE
T ss_pred             CEEECCCCc
Confidence            555555543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.97  E-value=0.0022  Score=58.54  Aligned_cols=78  Identities=13%  Similarity=0.176  Sum_probs=47.4

Q ss_pred             CCCCC-CcCeEEcCCCCCCccccc-cccCCCCccEEeccCC--CCchhh----hcccCCCCcceEeeecCCCCccccCCC
Q 019416           36 IRTGE-TLESLEIDNLSSLASFLR-SELAATTVKQLKINKC--PDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDY  107 (341)
Q Consensus        36 l~~~~-~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~--~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~  107 (341)
                      |.++. .|+.+.+..  .++.++. ++.++.+|+.+.+..+  ..+..+    |..  +.+|+.+.+.+  .+..++...
T Consensus        59 F~~~~~~L~sI~iP~--svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~--c~~L~~i~~~~--~~~~I~~~a  132 (394)
T 4gt6_A           59 FCNYKYVLTSVQIPD--TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMF--CSELTDIPILD--SVTEIDSEA  132 (394)
T ss_dssp             TTTCCSCCCEEEECT--TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTT--CTTCCBCGGGT--TCSEECTTT
T ss_pred             ccCCCCcCEEEEECC--CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchh--cccceeeccCC--ccceehhhh
Confidence            44553 488888864  4666644 4667888888887652  123332    666  77777776654  355555433


Q ss_pred             C--CCCccEEEEeC
Q 019416          108 F--PTTLKRLKICD  119 (341)
Q Consensus       108 ~--~~~L~~L~l~~  119 (341)
                      +  +.+|+.+.+..
T Consensus       133 F~~c~~L~~i~lp~  146 (394)
T 4gt6_A          133 FHHCEELDTVTIPE  146 (394)
T ss_dssp             TTTCTTCCEEECCT
T ss_pred             hhhhcccccccccc
Confidence            3  56777777654

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.93  E-value=4.7e-05  Score=68.33  Aligned_cols=100  Identities=20%  Similarity=0.114  Sum_probs=65.2

Q ss_pred             eEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCcccccchh-hhccCCCcCeEeecC
Q 019416          209 ELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSG  286 (341)
Q Consensus       209 ~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~  286 (341)
                      .++.++.+.+..+|. +..+++|+.|++++++.+..++... ..+++|++|+++++ .++.++. .+..+++|+.|++++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCCC
Confidence            345555335667777 7777778888887645566666432 23568888888875 5766654 567788888888876


Q ss_pred             CCCCccCCCCCC-CCCccEEEeecCC
Q 019416          287 CPSLMSFPHGGL-PPNLISLGIIDCE  311 (341)
Q Consensus       287 c~~l~~~~~~~~-~~~L~~L~l~~c~  311 (341)
                       +.+..++...+ ...|+.|++.+++
T Consensus        90 -N~l~~~~~~~~~~~~L~~l~l~~N~  114 (347)
T 2ifg_A           90 -NALESLSWKTVQGLSLQELVLSGNP  114 (347)
T ss_dssp             -SCCSCCCSTTTCSCCCCEEECCSSC
T ss_pred             -CccceeCHHHcccCCceEEEeeCCC
Confidence             46677765432 2248888887654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.90  E-value=0.00078  Score=61.53  Aligned_cols=37  Identities=16%  Similarity=0.183  Sum_probs=26.0

Q ss_pred             CCCCCCCcCeEEcCCCCCCccccc-cccCCCCccEEeccC
Q 019416           35 GIRTGETLESLEIDNLSSLASFLR-SELAATTVKQLKINK   73 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~   73 (341)
                      .|.+|.+|+.+++.+  .++.++. .+.++.+|+.+.+..
T Consensus        89 aF~~c~~L~~i~lp~--~l~~I~~~aF~~c~~L~~i~~p~  126 (394)
T 4fs7_A           89 AFENCSKLEIINIPD--SVKMIGRCTFSGCYALKSILLPL  126 (394)
T ss_dssp             TTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCCCCCCT
T ss_pred             HhhCCCCCcEEEeCC--CceEccchhhcccccchhhcccC
Confidence            467799999999974  3566644 366677787766643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.86  E-value=4e-05  Score=68.81  Aligned_cols=82  Identities=21%  Similarity=0.223  Sum_probs=64.5

Q ss_pred             CCCCCCcCeEEcCCCCCCcccc-ccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCC-C
Q 019416           36 IRTGETLESLEIDNLSSLASFL-RSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYF-P  109 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~  109 (341)
                      +..+.+|++|+|++++.++.++ ..+.++++|+.|+|++ +.+..+    |..  +++|++|++++| .+..++...+ .
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~--l~~L~~L~l~~N-~l~~~~~~~~~~  102 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHF--TPRLSRLNLSFN-ALESLSWKTVQG  102 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGS--CSCCCEEECCSS-CCSCCCSTTTCS
T ss_pred             CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHhcC--CcCCCEEeCCCC-ccceeCHHHccc
Confidence            7788899999999645677776 4578899999999999 466665    788  999999999985 6777765333 2


Q ss_pred             CCccEEEEeCCC
Q 019416          110 TTLKRLKICDCT  121 (341)
Q Consensus       110 ~~L~~L~l~~~~  121 (341)
                      ..|+.|++.+|.
T Consensus       103 ~~L~~l~l~~N~  114 (347)
T 2ifg_A          103 LSLQELVLSGNP  114 (347)
T ss_dssp             CCCCEEECCSSC
T ss_pred             CCceEEEeeCCC
Confidence            339999999876

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.85  E-value=2.1e-05  Score=71.29  Aligned_cols=81  Identities=15%  Similarity=0.083  Sum_probs=45.9

Q ss_pred             ccCCCCccEEeccCCCC------------chhhhcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHH
Q 019416           60 ELAATTVKQLKINKCPD------------LEVLLHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELIL  127 (341)
Q Consensus        60 ~~~l~~L~~L~l~~~~~------------l~~~~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~  127 (341)
                      ...+++|+.|.+.+...            +..++..  +++|+.|+++++..+ .++... .++|++|.+..|.......
T Consensus       135 ~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~--~P~L~~L~L~g~~~l-~l~~~~-~~~L~~L~L~~~~l~~~~l  210 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDA--MPLLNNLKIKGTNNL-SIGKKP-RPNLKSLEIISGGLPDSVV  210 (362)
T ss_dssp             HHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHT--CTTCCEEEEECCBTC-BCCSCB-CTTCSEEEEECSBCCHHHH
T ss_pred             hhhcchhhheeecCcchhhcccccccccCHHHHHhc--CCCCcEEEEeCCCCc-eecccc-CCCCcEEEEecCCCChHHH
Confidence            34567888888754211            2222677  889999999876323 233322 6788999888776433211


Q ss_pred             HHhhhhcccccceEeec
Q 019416          128 KVLMDQKGLALESLEVD  144 (341)
Q Consensus       128 ~~~~~~~~~~L~~L~l~  144 (341)
                      ..+...-.|+|+.|++.
T Consensus       211 ~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          211 EDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHHSBCTTCCEEEEE
T ss_pred             HHHHHccCCCCcEEEEe
Confidence            11111001677777664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=97.80  E-value=0.0051  Score=55.65  Aligned_cols=75  Identities=8%  Similarity=0.116  Sum_probs=39.2

Q ss_pred             CCCCCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCC-C
Q 019416           36 IRTGETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYF-P  109 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~-~  109 (341)
                      +....+|+.+.+.  ..++.++. ++.++.+|+++.+..  .+..+    |..  + +|+.+.+..  .+..++...+ .
T Consensus        42 ~~~~~~i~~v~ip--~~vt~Ig~~aF~~C~~L~~I~lp~--~v~~Ig~~aF~~--c-~l~~i~~~~--~l~~I~~~aF~~  112 (379)
T 4h09_A           42 YKDRDRISEVRVN--SGITSIGEANFNSCYNMTKVTVAS--TVTSIGDGAFAD--T-KLQSYTGME--RVKKFGDYVFQG  112 (379)
T ss_dssp             GGGGGGCSEEEEC--TTEEEECTTTTTTCTTCCEEEECT--TCCEECTTTTTT--C-CCCEEEECT--TCCEECTTTTTT
T ss_pred             cccccCCEEEEeC--CCccChHHHHhhCCCCCCEEEeCC--cceEechhhhcC--C-CCceEECCc--eeeEeccceecc
Confidence            3345566777765  35566644 355667777777753  12222    444  4 456555543  3444444333 2


Q ss_pred             CCccEEEEeC
Q 019416          110 TTLKRLKICD  119 (341)
Q Consensus       110 ~~L~~L~l~~  119 (341)
                      .+|+.+.+.+
T Consensus       113 ~~L~~i~lp~  122 (379)
T 4h09_A          113 TDLDDFEFPG  122 (379)
T ss_dssp             CCCSEEECCT
T ss_pred             CCcccccCCC
Confidence            3566666544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.76  E-value=9.1e-05  Score=67.02  Aligned_cols=127  Identities=17%  Similarity=0.187  Sum_probs=80.6

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh------hcccCCCCcceEeeecCCC-------Ccc
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL------LHRMAYTSLEYLEFSSCLF-------FSN  102 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~------~~~~~l~~L~~L~l~~~~~-------l~~  102 (341)
                      +..+|+|+.|.|+++... .++. + ..++|+.|.+..|. +...      ...  +++|+.|+++.+..       +..
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~-l~~~~l~~l~~~~--lp~L~~L~L~~~~~~~~~~~~~~~  241 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGG-LPDSVVEDILGSD--LPNLEKLVLYVGVEDYGFDGDMNV  241 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSB-CCHHHHHHHHHSB--CTTCCEEEEECBCGGGTCCSCGGG
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCC-CChHHHHHHHHcc--CCCCcEEEEeccccccccchhHHH
Confidence            356899999999887433 2332 2 37899999998754 3222      346  99999999863211       111


Q ss_pred             cc---CCCCCCCccEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccc-----cCCC-CCccccceEEeecc
Q 019416          103 SK---QDYFPTTLKRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFS-----LPIN-QLPATLRHLRIVNC  169 (341)
Q Consensus       103 ~~---~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~-----l~~~-~~~~~L~~L~l~~~  169 (341)
                      +.   ....+++|++|.+.+|.........+..... ++|++|+++. +.++.     +..+ ..+++|++|++++|
T Consensus       242 l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n  317 (362)
T 2ra8_A          242 FRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVLTDEGARLLLDHVDKIKHLKFINMKYN  317 (362)
T ss_dssp             TGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred             HHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCCChHHHHHHHhhcccCCcceEEECCCC
Confidence            11   1224799999999998855431111222111 8999999976 56655     2222 34578999999876

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=97.65  E-value=7.2e-06  Score=74.68  Aligned_cols=78  Identities=9%  Similarity=0.159  Sum_probs=37.3

Q ss_pred             CCCcCeEEcCCCCCCccc-cccc----c-CCCCccEEeccCCCCchhh-----hcccCCCCcceEeeecCCCCccccCC-
Q 019416           39 GETLESLEIDNLSSLASF-LRSE----L-AATTVKQLKINKCPDLEVL-----LHRMAYTSLEYLEFSSCLFFSNSKQD-  106 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~-~~~~----~-~l~~L~~L~l~~~~~l~~~-----~~~~~l~~L~~L~l~~~~~l~~~~~~-  106 (341)
                      ++.|++|++++|. ++.. ...+    . ..++|++|++++| .+.+.     ...  +++|+.|++++| .+...... 
T Consensus        71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~--L~~L~~L~Ls~n-~l~~~~~~~  145 (372)
T 3un9_A           71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPV--FLRARKLGLQLN-SLGPEACKD  145 (372)
T ss_dssp             HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHH--HHTEEEEECCSS-CCCHHHHHH
T ss_pred             HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHH--HHhccHhhcCCC-CCCHHHHHH
Confidence            4556677776653 2221 1111    1 1246666777664 33221     344  556666666664 33222110 


Q ss_pred             ------CCCCCccEEEEeCCC
Q 019416          107 ------YFPTTLKRLKICDCT  121 (341)
Q Consensus       107 ------~~~~~L~~L~l~~~~  121 (341)
                            ...++|++|++++|.
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~  166 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNP  166 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSC
T ss_pred             HHHHHHhcCCccceeeCCCCC
Confidence                  123556666666664

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.42  E-value=0.023  Score=51.64  Aligned_cols=104  Identities=14%  Similarity=0.249  Sum_probs=77.1

Q ss_pred             ccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCCCC--
Q 019416          223 EDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHGGL--  298 (341)
Q Consensus       223 ~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~--  298 (341)
                      ..|..+..|+.+.+.+  .+..+....+ .+++|+.+.+..  .++.++. .+..+.+|+.+.+.+  .++.++...|  
T Consensus       259 ~aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~  332 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAG  332 (394)
T ss_dssp             TTTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTT
T ss_pred             ceeeecccccEEeccc--ccceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhC
Confidence            4567788899888864  3444544332 346899998874  5777765 678899999999964  5888887755  


Q ss_pred             CCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          299 PPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       299 ~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                      ..+|+.+.+..  .++.....++..+++|+.+++.+
T Consensus       333 C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~  366 (394)
T 4gt6_A          333 CEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG  366 (394)
T ss_dssp             CTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred             CCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence            47899999964  36655555789999999999876

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.13  E-value=0.00098  Score=54.09  Aligned_cols=108  Identities=18%  Similarity=0.101  Sum_probs=63.6

Q ss_pred             CCCCCCCcCeEEcCCCCCCcc-----ccccccCCCCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCc
Q 019416           35 GIRTGETLESLEIDNLSSLAS-----FLRSELAATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFS  101 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~  101 (341)
                      .+...+.|++|++++|..+..     +...+...++|++|++++| .+.+.        +..  .++|++|++++| .+.
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~--n~~L~~L~L~~N-~i~  106 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKV--NNTLKSLNVESN-FIS  106 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHH--CSSCCEEECCSS-CCC
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHh--CCCcCEEECcCC-cCC
Confidence            456788899999988723332     2223445688999999885 44332        555  678888888875 443


Q ss_pred             ccc------CCCCCCCccEEEE--eCCCChHHHHHHhhhhcc--cccceEeecCC
Q 019416          102 NSK------QDYFPTTLKRLKI--CDCTNAELILKVLMDQKG--LALESLEVDGC  146 (341)
Q Consensus       102 ~~~------~~~~~~~L~~L~l--~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~  146 (341)
                      .-.      .....++|++|++  ++|..-..-...+...+.  ++|++|+++++
T Consensus       107 ~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          107 GSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            321      1223567888888  666533221111222222  67777777653

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.85  E-value=0.00067  Score=58.41  Aligned_cols=59  Identities=14%  Similarity=0.137  Sum_probs=38.6

Q ss_pred             CCCCccEEeccCCCCchhh------hcccCCCCcceEeeecCCCCccccCCCCCC--CccEEEEeCCCChH
Q 019416           62 AATTVKQLKINKCPDLEVL------LHRMAYTSLEYLEFSSCLFFSNSKQDYFPT--TLKRLKICDCTNAE  124 (341)
Q Consensus        62 ~l~~L~~L~l~~~~~l~~~------~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~--~L~~L~l~~~~~~~  124 (341)
                      .+++|+.|+|++ +.+..+      +..  +++|+.|+++++ .+..+.....+.  +|+.|.+.+|+...
T Consensus       168 ~l~~L~~L~Ls~-N~l~~l~~l~~~~~~--l~~L~~L~Ls~N-~i~~~~~l~~l~~l~L~~L~L~~Npl~~  234 (267)
T 3rw6_A          168 NIPELLSLNLSN-NRLYRLDDMSSIVQK--APNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNSLCD  234 (267)
T ss_dssp             HCTTCCEEECTT-SCCCCCGGGTTHHHH--STTCCEEECTTS-CCCSGGGGGGGTTSCCSEEECTTSTTGG
T ss_pred             hCCCCCEEECCC-CCCCCCccchhHHhh--CCCCCEEECCCC-ccCCchhhhhcccCCcceEEccCCcCcc
Confidence            467888888887 445442      457  888888888774 555543333333  78888888887543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.83  E-value=0.22  Score=44.70  Aligned_cols=73  Identities=12%  Similarity=0.207  Sum_probs=43.0

Q ss_pred             CCCCCCCcCeEEcCCCCCCcccccc-ccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCC-
Q 019416           35 GIRTGETLESLEIDNLSSLASFLRS-ELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYF-  108 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~-  108 (341)
                      .|.+|.+|+.+++..  .++.++.. +..+ +|+.+.+..  .+..+    +..   .+|+.+.+.+  .+..+....+ 
T Consensus        64 aF~~C~~L~~I~lp~--~v~~Ig~~aF~~c-~l~~i~~~~--~l~~I~~~aF~~---~~L~~i~lp~--~~~~i~~~~F~  133 (379)
T 4h09_A           64 NFNSCYNMTKVTVAS--TVTSIGDGAFADT-KLQSYTGME--RVKKFGDYVFQG---TDLDDFEFPG--ATTEIGNYIFY  133 (379)
T ss_dssp             TTTTCTTCCEEEECT--TCCEECTTTTTTC-CCCEEEECT--TCCEECTTTTTT---CCCSEEECCT--TCCEECTTTTT
T ss_pred             HhhCCCCCCEEEeCC--cceEechhhhcCC-CCceEECCc--eeeEeccceecc---CCcccccCCC--ccccccccccc
Confidence            477899999999974  46677553 4444 677777654  23333    444   3788888864  3444433222 


Q ss_pred             CCCccEEEE
Q 019416          109 PTTLKRLKI  117 (341)
Q Consensus       109 ~~~L~~L~l  117 (341)
                      -.+++...+
T Consensus       134 ~~~l~~~~~  142 (379)
T 4h09_A          134 NSSVKRIVI  142 (379)
T ss_dssp             TCCCCEEEE
T ss_pred             cceeeeeec
Confidence            223444444

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=96.76  E-value=0.0017  Score=58.91  Aligned_cols=127  Identities=15%  Similarity=0.060  Sum_probs=82.7

Q ss_pred             CCCcCeEEcCCCCCCcccccc-ccCCCCccEEeccCCCCchhh----h-----cccCCCCcceEeeecCCCCccccC---
Q 019416           39 GETLESLEIDNLSSLASFLRS-ELAATTVKQLKINKCPDLEVL----L-----HRMAYTSLEYLEFSSCLFFSNSKQ---  105 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~l~~~----~-----~~~~l~~L~~L~l~~~~~l~~~~~---  105 (341)
                      .++|++|++++|.....-... ...+++|++|++++| .+.+.    +     ..  .++|++|++++| .+.....   
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~--~~~L~~L~Ls~n-~l~~~~~~~l  175 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHD--QCQITTLRLSNN-PLTAAGVAVL  175 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHST--TCCCCEEECCSS-CCHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhc--CCccceeeCCCC-CCChHHHHHH
Confidence            479999999997532211111 234679999999996 55433    2     45  689999999987 4543211   


Q ss_pred             ---CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC------CCccccceEEeeccC
Q 019416          106 ---DYFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN------QLPATLRHLRIVNCM  170 (341)
Q Consensus       106 ---~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~------~~~~~L~~L~l~~~~  170 (341)
                         ....++|++|++++|.....-...++..+.  ++|++|++++| .++.....      ...++|++|+++++.
T Consensus       176 ~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          176 MEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             HHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             HHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence               134688999999999743321112344443  79999999985 55542211      234689999999864

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=96.13  E-value=0.0053  Score=49.67  Aligned_cols=106  Identities=13%  Similarity=0.059  Sum_probs=68.9

Q ss_pred             ccCCCCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCccccC------CCCCCCccEEEEeCCCChHH
Q 019416           60 ELAATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFSNSKQ------DYFPTTLKRLKICDCTNAEL  125 (341)
Q Consensus        60 ~~~l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~~~~~------~~~~~~L~~L~l~~~~~~~~  125 (341)
                      ....++|++|++++|..+.+.        +..  .++|++|++++| .+..-..      ....++|++|++++|..-..
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~--~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKT--NTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTT--CCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHh--CCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            445689999999996355432        667  889999999986 4443211      12257899999999974433


Q ss_pred             HHHHhhhhcc--cccceEee--cCCCCccccCC-----C-CCccccceEEeecc
Q 019416          126 ILKVLMDQKG--LALESLEV--DGCSSLFSLPI-----N-QLPATLRHLRIVNC  169 (341)
Q Consensus       126 ~~~~~~~~~~--~~L~~L~l--~~~~~l~~l~~-----~-~~~~~L~~L~l~~~  169 (341)
                      -...+...+.  ++|++|++  .+ +.++.-..     . ...++|++|+++++
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            1112344444  88999999  55 45543211     1 22367999999875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=95.93  E-value=0.0042  Score=53.39  Aligned_cols=60  Identities=20%  Similarity=0.080  Sum_probs=37.7

Q ss_pred             hcccCCCCcceEeeecCCCCccccCCC----CCCCccEEEEeCCCChHHHHHHhhhhcc--c--ccceEeecCCCCc
Q 019416           81 LHRMAYTSLEYLEFSSCLFFSNSKQDY----FPTTLKRLKICDCTNAELILKVLMDQKG--L--ALESLEVDGCSSL  149 (341)
Q Consensus        81 ~~~~~l~~L~~L~l~~~~~l~~~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~--~L~~L~l~~~~~l  149 (341)
                      ...  +++|+.|++++| .+..++...    .+++|+.|++++|. +..    +.. +.  .  +|++|++++++--
T Consensus       166 ~~~--l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~----~~~-l~~l~~l~L~~L~L~~Npl~  233 (267)
T 3rw6_A          166 EEN--IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKS----ERE-LDKIKGLKLEELWLDGNSLC  233 (267)
T ss_dssp             HHH--CTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC-CCS----GGG-GGGGTTSCCSEEECTTSTTG
T ss_pred             Hhh--CCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc-cCC----chh-hhhcccCCcceEEccCCcCc
Confidence            356  788888888875 555554322    37888888888875 333    211 11  3  7888888875533

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=89.54  E-value=0.51  Score=38.27  Aligned_cols=81  Identities=11%  Similarity=0.241  Sum_probs=45.6

Q ss_pred             CCCCCCcCeEEcCCCCCCcc-----ccccccCCCCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCcc
Q 019416           36 IRTGETLESLEIDNLSSLAS-----FLRSELAATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFSN  102 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~~  102 (341)
                      +..-+.|+.|+|+++..+..     +......-..|+.|+|++| .+.+.        +..  -+.|+.|+++++ .+..
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~--N~tL~~L~L~~N-~Ig~  112 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIET--SPSLRVLNVESN-FLTP  112 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHH--CSSCCEEECCSS-BCCH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhc--CCccCeEecCCC-cCCH
Confidence            44567788888876423321     1122333467888888774 44433        445  667788888764 4433


Q ss_pred             ccC------CCCCCCccEEEEeCC
Q 019416          103 SKQ------DYFPTTLKRLKICDC  120 (341)
Q Consensus       103 ~~~------~~~~~~L~~L~l~~~  120 (341)
                      -..      ...-+.|++|+++++
T Consensus       113 ~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          113 ELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHhhCCceeEEECCCC
Confidence            221      122355777777654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=84.74  E-value=2.1  Score=34.65  Aligned_cols=79  Identities=15%  Similarity=0.170  Sum_probs=42.2

Q ss_pred             CCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCccccCCC------CCCCccEEEEeCCCChHHHHHH
Q 019416           64 TTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFSNSKQDY------FPTTLKRLKICDCTNAELILKV  129 (341)
Q Consensus        64 ~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~~~~~~~------~~~~L~~L~l~~~~~~~~~~~~  129 (341)
                      +.|++|++++++.+.+.        +..  -..|+.|++++| .+.......      .-+.|++|++++|..-..-...
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~--N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACN--SKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTT--CSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhh--CCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            67888888764344332        555  667788888765 443332111      1366777777776532221111


Q ss_pred             hhhhcc--cccceEeecC
Q 019416          130 LMDQKG--LALESLEVDG  145 (341)
Q Consensus       130 ~~~~~~--~~L~~L~l~~  145 (341)
                      +.+.+.  .+|++|++++
T Consensus       118 la~aL~~N~tL~~L~L~n  135 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADN  135 (197)
T ss_dssp             HHHHTTTTCCCSEEECCC
T ss_pred             HHHHHhhCCceeEEECCC
Confidence            222222  5666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=84.63  E-value=1.6  Score=32.56  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=21.5

Q ss_pred             cccccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEecccC
Q 019416          220 FLPEDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISEC  263 (341)
Q Consensus       220 ~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~  263 (341)
                      .+|..+  .++|+.|+++++ .+..++...+ .+++|++|++.++
T Consensus        24 ~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L~~N   65 (130)
T 3rfe_A           24 SLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHLGAN   65 (130)
T ss_dssp             TSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEECCSS
T ss_pred             cCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEecCC
Confidence            555433  235666666663 3555555432 2346666666654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=83.43  E-value=1.6  Score=32.54  Aligned_cols=8  Identities=13%  Similarity=0.264  Sum_probs=3.3

Q ss_pred             ccEEeccC
Q 019416           66 VKQLKINK   73 (341)
Q Consensus        66 L~~L~l~~   73 (341)
                      |+.|+|++
T Consensus        33 l~~L~Ls~   40 (130)
T 3rfe_A           33 TTELVLTG   40 (130)
T ss_dssp             CSEEECTT
T ss_pred             CCEEECCC
Confidence            44444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	341
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.67
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.66
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.64
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.61
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.5
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.48
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.47
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.41
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.38
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.37
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.35
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.34
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.33
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.33
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.33
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.32
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.3
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.27
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.22
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.19
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.15
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.13
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.78
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.72
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.69
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.68
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.57
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.52
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.39
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.25
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.1
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.01
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.0
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.97
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.78
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.16
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	95.83
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	95.4
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	94.96
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.96
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	92.89
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	91.07

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=2.2e-15  Score=135.90  Aligned_cols=178  Identities=19%  Similarity=0.179  Sum_probs=108.9

Q ss_pred             cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCc--------ceeeeCCCCCCcCCCccccccccccccccc
Q 019416          136 LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGE--------SSKIRNCDSVVGPEGESSLENMTSSHTLEL  207 (341)
Q Consensus       136 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~--------~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L  207 (341)
                      ++++.++++++ .++.++.....++|++|+++++. ++.++.        .+.++++. +..      +.  +...+++|
T Consensus       197 ~~~~~l~l~~n-~i~~~~~~~~~~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~-l~~------~~--~~~~~~~L  265 (384)
T d2omza2         197 TNLESLIATNN-QISDITPLGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDLANNQ-ISN------LA--PLSGLTKL  265 (384)
T ss_dssp             TTCSEEECCSS-CCCCCGGGGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSC-CCC------CG--GGTTCTTC
T ss_pred             cccceeeccCC-ccCCCCcccccCCCCEEECCCCC-CCCcchhhcccccchhccccCc-cCC------CC--cccccccC
Confidence            66777777763 55555444555678888887652 333321        22222221 010      00  01134457


Q ss_pred             ceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCC
Q 019416          208 RELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGC  287 (341)
Q Consensus       208 ~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c  287 (341)
                      ++++++++. +..++ .+..++.++.+.+.++. ++.++. ...++++++|+++++ +++.++ .+..+++|++|++++|
T Consensus       266 ~~L~l~~~~-l~~~~-~~~~~~~l~~l~~~~n~-l~~~~~-~~~~~~l~~L~ls~n-~l~~l~-~l~~l~~L~~L~L~~n  339 (384)
T d2omza2         266 TELKLGANQ-ISNIS-PLAGLTALTNLELNENQ-LEDISP-ISNLKNLTYLTLYFN-NISDIS-PVSSLTKLQRLFFANN  339 (384)
T ss_dssp             SEEECCSSC-CCCCG-GGTTCTTCSEEECCSSC-CSCCGG-GGGCTTCSEEECCSS-CCSCCG-GGGGCTTCCEEECCSS
T ss_pred             CEeeccCcc-cCCCC-ccccccccccccccccc-cccccc-cchhcccCeEECCCC-CCCCCc-ccccCCCCCEEECCCC
Confidence            777776643 33332 24455667777776643 333322 122368999999986 577776 4788999999999986


Q ss_pred             CCCccCCCCCCCCCccEEEeecCCCCCccccccccCCCceeEEEEeC
Q 019416          288 PSLMSFPHGGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKYTILG  334 (341)
Q Consensus       288 ~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~  334 (341)
                       .++.++.-...++|++|++++| .++..+.  +.++++|+.|++++
T Consensus       340 -~l~~l~~l~~l~~L~~L~l~~N-~l~~l~~--l~~l~~L~~L~L~~  382 (384)
T d2omza2         340 -KVSDVSSLANLTNINWLSAGHN-QISDLTP--LANLTRITQLGLND  382 (384)
T ss_dssp             -CCCCCGGGGGCTTCCEEECCSS-CCCBCGG--GTTCTTCSEEECCC
T ss_pred             -CCCCChhHcCCCCCCEEECCCC-cCCCChh--hccCCCCCEeeCCC
Confidence             6777764344689999999877 4554443  58889999999886

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2.8e-15  Score=135.22  Aligned_cols=267  Identities=15%  Similarity=0.162  Sum_probs=154.0

Q ss_pred             CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCccEE
Q 019416           38 TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRL  115 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L  115 (341)
                      .+.+|++|+++++ .++.+ ..+..+++|++|++++ +.++++  ++.  +++|++|++++| .+..++....+++|+.|
T Consensus        42 ~l~~l~~L~l~~~-~I~~l-~gl~~L~nL~~L~Ls~-N~l~~l~~l~~--L~~L~~L~L~~n-~i~~i~~l~~l~~L~~L  115 (384)
T d2omza2          42 DLDQVTTLQADRL-GIKSI-DGVEYLNNLTQINFSN-NQLTDITPLKN--LTKLVDILMNNN-QIADITPLANLTNLTGL  115 (384)
T ss_dssp             HHTTCCEEECCSS-CCCCC-TTGGGCTTCCEEECCS-SCCCCCGGGTT--CTTCCEEECCSS-CCCCCGGGTTCTTCCEE
T ss_pred             HhCCCCEEECCCC-CCCCc-cccccCCCCCEEeCcC-CcCCCCccccC--Cccccccccccc-ccccccccccccccccc
Confidence            4667778888765 34444 2355677888888877 356555  677  778888888775 45555555667777777


Q ss_pred             EEeCCCChHHHHHHhhhhcc-cccceEeec------------------------------------------CCCCcccc
Q 019416          116 KICDCTNAELILKVLMDQKG-LALESLEVD------------------------------------------GCSSLFSL  152 (341)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~------------------------------------------~~~~l~~l  152 (341)
                      +++++....     ++.... ..+......                                          ........
T Consensus       116 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (384)
T d2omza2         116 TLFNNQITD-----IDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI  190 (384)
T ss_dssp             ECCSSCCCC-----CGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             ccccccccc-----cccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccc
Confidence            776654222     111111 111111100                                          00000011


Q ss_pred             CCCCCccccceEEeeccCCccccCc--------ceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCccccc
Q 019416          153 PINQLPATLRHLRIVNCMNLKSLGE--------SSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPED  224 (341)
Q Consensus       153 ~~~~~~~~L~~L~l~~~~~l~~~~~--------~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~  224 (341)
                      .....+++++.++++++. +..++.        .+.++++. ++.      +..+.  .+++|+.++++++. +..++ .
T Consensus       191 ~~~~~l~~~~~l~l~~n~-i~~~~~~~~~~~L~~L~l~~n~-l~~------~~~l~--~l~~L~~L~l~~n~-l~~~~-~  258 (384)
T d2omza2         191 SVLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSLNGNQ-LKD------IGTLA--SLTNLTDLDLANNQ-ISNLA-P  258 (384)
T ss_dssp             GGGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEECCSSC-CCC------CGGGG--GCTTCSEEECCSSC-CCCCG-G
T ss_pred             cccccccccceeeccCCc-cCCCCcccccCCCCEEECCCCC-CCC------cchhh--cccccchhccccCc-cCCCC-c
Confidence            111334677888877642 332221        23333322 111      11111  44567777777753 44443 3


Q ss_pred             CCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccE
Q 019416          225 MHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLIS  304 (341)
Q Consensus       225 ~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~  304 (341)
                      +..+++|++|+++++. +..++.. ..++.++.+.+..+ .++.++ .+..+++++.|+++++ .++.++....+++|++
T Consensus       259 ~~~~~~L~~L~l~~~~-l~~~~~~-~~~~~l~~l~~~~n-~l~~~~-~~~~~~~l~~L~ls~n-~l~~l~~l~~l~~L~~  333 (384)
T d2omza2         259 LSGLTKLTELKLGANQ-ISNISPL-AGLTALTNLELNEN-QLEDIS-PISNLKNLTYLTLYFN-NISDISPVSSLTKLQR  333 (384)
T ss_dssp             GTTCTTCSEEECCSSC-CCCCGGG-TTCTTCSEEECCSS-CCSCCG-GGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCE
T ss_pred             ccccccCCEeeccCcc-cCCCCcc-cccccccccccccc-cccccc-ccchhcccCeEECCCC-CCCCCcccccCCCCCE
Confidence            5566778888887653 3333321 11246777777764 455554 4678899999999875 6777654345789999


Q ss_pred             EEeecCCCCCccccccccCCCceeEEEEeCCC
Q 019416          305 LGIIDCENLIPLSQWELHKLKHLNKYTILGGL  336 (341)
Q Consensus       305 L~l~~c~~~~~~~~~~i~~~~~L~~l~l~~~C  336 (341)
                      |++++| .++..+  .+..+++|++|++++ |
T Consensus       334 L~L~~n-~l~~l~--~l~~l~~L~~L~l~~-N  361 (384)
T d2omza2         334 LFFANN-KVSDVS--SLANLTNINWLSAGH-N  361 (384)
T ss_dssp             EECCSS-CCCCCG--GGGGCTTCCEEECCS-S
T ss_pred             EECCCC-CCCCCh--hHcCCCCCCEEECCC-C
Confidence            999998 555444  368899999999998 5

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.64  E-value=2.4e-14  Score=125.36  Aligned_cols=235  Identities=13%  Similarity=0.132  Sum_probs=168.8

Q ss_pred             CCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416           39 GETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK  113 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~  113 (341)
                      .+++++|++++| .++.+++ ++..+++|++|+++++. +..+    +..  +++|++|+++++ .+..++. ...+.++
T Consensus        30 ~~~l~~L~Ls~N-~i~~l~~~~f~~l~~L~~L~l~~n~-~~~i~~~~f~~--l~~L~~L~l~~n-~l~~l~~-~~~~~l~  103 (305)
T d1xkua_          30 PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAP--LVKLERLYLSKN-QLKELPE-KMPKTLQ  103 (305)
T ss_dssp             CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTT--CTTCCEEECCSS-CCSBCCS-SCCTTCC
T ss_pred             CCCCCEEECcCC-cCCCcChhHhhcccccccccccccc-ccccchhhhhC--CCccCEecccCC-ccCcCcc-chhhhhh
Confidence            367999999986 6778875 57789999999999864 3333    788  999999999986 6777775 3457899


Q ss_pred             EEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccCCC---CCccccceEEeeccCCccccCcceeeeCCCCC
Q 019416          114 RLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLPIN---QLPATLRHLRIVNCMNLKSLGESSKIRNCDSV  187 (341)
Q Consensus       114 ~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~---~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l  187 (341)
                      .|.+.++... .    ++....   .....+....+.........   ..+++|+.+++.++. +..++.          
T Consensus       104 ~L~~~~n~l~-~----l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l~~----------  167 (305)
T d1xkua_         104 ELRVHENEIT-K----VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQ----------  167 (305)
T ss_dssp             EEECCSSCCC-B----BCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSCCS----------
T ss_pred             hhhccccchh-h----hhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-ccccCc----------
Confidence            9998887532 2    222221   55666666553322221111   334677777777653 333322          


Q ss_pred             CcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCC-CCCCCcceEecccCccc
Q 019416          188 VGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGG-LPNTSLTSLLISECENL  266 (341)
Q Consensus       188 ~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~-~~~~~L~~L~l~~~~~l  266 (341)
                                    ..+++|++|++.++......+..+..++.++.|+++++ .+..++... ..+++|++|+++++ ++
T Consensus       168 --------------~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N-~L  231 (305)
T d1xkua_         168 --------------GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN-KL  231 (305)
T ss_dssp             --------------SCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS-CC
T ss_pred             --------------ccCCccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccccccccccceeeecccc-cc
Confidence                          12335999999998776667788888999999999986 566665533 33579999999997 69


Q ss_pred             ccchhhhccCCCcCeEeecCCCCCccCCCCCC--------CCCccEEEeecCCC
Q 019416          267 MSLPHQIHKATSLQDLSVSGCPSLMSFPHGGL--------PPNLISLGIIDCEN  312 (341)
Q Consensus       267 ~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--------~~~L~~L~l~~c~~  312 (341)
                      +.+|.++..+++|++|+++++ .++.++...+        ..+|+.|++.+++-
T Consensus       232 ~~lp~~l~~l~~L~~L~Ls~N-~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~  284 (305)
T d1xkua_         232 VKVPGGLADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPV  284 (305)
T ss_dssp             SSCCTTTTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSS
T ss_pred             cccccccccccCCCEEECCCC-ccCccChhhccCcchhcccCCCCEEECCCCcC
Confidence            999999999999999999985 6888765422        47899999998763

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.61  E-value=7.7e-16  Score=135.67  Aligned_cols=243  Identities=15%  Similarity=0.097  Sum_probs=169.6

Q ss_pred             CCCcCeEEcCCCCCCc--cccccccCCCCccEEeccCCCCch-hh---hcccCCCCcceEeeecCCCCccccC--CCCCC
Q 019416           39 GETLESLEIDNLSSLA--SFLRSELAATTVKQLKINKCPDLE-VL---LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPT  110 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~l~-~~---~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~  110 (341)
                      -.+++.|+++++....  .+|.+++.+++|++|++++|+.+. .+   ++.  +++|++|+++++ .+..++.  ...++
T Consensus        49 ~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~--L~~L~~L~Ls~N-~l~~~~~~~~~~~~  125 (313)
T d1ogqa_          49 TYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK--LTQLHYLYITHT-NVSGAIPDFLSQIK  125 (313)
T ss_dssp             CCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG--CTTCSEEEEEEE-CCEEECCGGGGGCT
T ss_pred             cEEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccccc--ccccchhhhccc-cccccccccccchh
Confidence            3479999999874332  467889999999999999876665 33   888  999999999986 4444432  33478


Q ss_pred             CccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC-CCccc-cceEEeeccCCccccCcceeeeCCCC
Q 019416          111 TLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN-QLPAT-LRHLRIVNCMNLKSLGESSKIRNCDS  186 (341)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~-~~~~~-L~~L~l~~~~~l~~~~~~l~l~~~~~  186 (341)
                      .|+.++++++.....    +|..+.  ++++.++++++.....+|.. ....+ ++.+.++++ .+.....         
T Consensus       126 ~L~~l~l~~N~~~~~----~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n-~l~~~~~---------  191 (313)
T d1ogqa_         126 TLVTLDFSYNALSGT----LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN-RLTGKIP---------  191 (313)
T ss_dssp             TCCEEECCSSEEESC----CCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS-EEEEECC---------
T ss_pred             hhccccccccccccc----CchhhccCcccceeeccccccccccccccccccccccccccccc-ccccccc---------
Confidence            899999999876655    676666  89999999886544455543 22333 355655543 2221110         


Q ss_pred             CCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCccc
Q 019416          187 VVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENL  266 (341)
Q Consensus       187 l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l  266 (341)
                             ..+..+      ....+++.++.....+|..+..+++++.+++.++.-...++ ....+++|++|+++++. +
T Consensus       192 -------~~~~~l------~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~-l  256 (313)
T d1ogqa_         192 -------PTFANL------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNR-I  256 (313)
T ss_dssp             -------GGGGGC------CCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSC-C
T ss_pred             -------cccccc------ccccccccccccccccccccccccccccccccccccccccc-ccccccccccccCccCe-e
Confidence                   000011      24467777766656678888888999999999875333333 23334799999999964 6


Q ss_pred             c-cchhhhccCCCcCeEeecCCCCCc-cCCCCCCCCCccEEEeecCCCCC
Q 019416          267 M-SLPHQIHKATSLQDLSVSGCPSLM-SFPHGGLPPNLISLGIIDCENLI  314 (341)
Q Consensus       267 ~-~l~~~l~~l~~L~~L~l~~c~~l~-~~~~~~~~~~L~~L~l~~c~~~~  314 (341)
                      + .+|+.+..+++|++|+++++ ++. .+|..+.+++|+.+++.+++.+.
T Consensus       257 ~g~iP~~l~~L~~L~~L~Ls~N-~l~g~iP~~~~L~~L~~l~l~~N~~l~  305 (313)
T d1ogqa_         257 YGTLPQGLTQLKFLHSLNVSFN-NLCGEIPQGGNLQRFDVSAYANNKCLC  305 (313)
T ss_dssp             EECCCGGGGGCTTCCEEECCSS-EEEEECCCSTTGGGSCGGGTCSSSEEE
T ss_pred             cccCChHHhCCCCCCEEECcCC-cccccCCCcccCCCCCHHHhCCCcccc
Confidence            5 79999999999999999985 555 77765566788888888776554

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.50  E-value=1e-12  Score=114.77  Aligned_cols=255  Identities=11%  Similarity=0.083  Sum_probs=170.5

Q ss_pred             CcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC--CCCCCCccE
Q 019416           41 TLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ--DYFPTTLKR  114 (341)
Q Consensus        41 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~--~~~~~~L~~  114 (341)
                      ..++++-++ ..++.+|..+.  +++++|+++++ +++.+    +..  +++|++|+++++. +..++.  ...+++|++
T Consensus        11 ~~~~~~C~~-~~L~~lP~~l~--~~l~~L~Ls~N-~i~~l~~~~f~~--l~~L~~L~l~~n~-~~~i~~~~f~~l~~L~~   83 (305)
T d1xkua_          11 HLRVVQCSD-LGLEKVPKDLP--PDTALLDLQNN-KITEIKDGDFKN--LKNLHTLILINNK-ISKISPGAFAPLVKLER   83 (305)
T ss_dssp             ETTEEECTT-SCCCSCCCSCC--TTCCEEECCSS-CCCCBCTTTTTT--CTTCCEEECCSSC-CCCBCTTTTTTCTTCCE
T ss_pred             cCCEEEecC-CCCCccCCCCC--CCCCEEECcCC-cCCCcChhHhhc--ccccccccccccc-ccccchhhhhCCCccCE
Confidence            345665554 45778877553  78999999995 56555    788  9999999999874 445533  345899999


Q ss_pred             EEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCCcCCC
Q 019416          115 LKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEG  192 (341)
Q Consensus       115 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~  192 (341)
                      |++++|. ++.    +|....+.+..|...+ +.+..++..  .....+..++..........               ..
T Consensus        84 L~l~~n~-l~~----l~~~~~~~l~~L~~~~-n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~---------------~~  142 (305)
T d1xkua_          84 LYLSKNQ-LKE----LPEKMPKTLQELRVHE-NEITKVRKSVFNGLNQMIVVELGTNPLKSSG---------------IE  142 (305)
T ss_dssp             EECCSSC-CSB----CCSSCCTTCCEEECCS-SCCCBBCHHHHTTCTTCCEEECCSSCCCGGG---------------BC
T ss_pred             ecccCCc-cCc----Cccchhhhhhhhhccc-cchhhhhhhhhhccccccccccccccccccC---------------CC
Confidence            9999985 555    6666557888888876 455554432  12234444544432211000               00


Q ss_pred             cccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccch-h
Q 019416          193 ESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLP-H  271 (341)
Q Consensus       193 ~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~-~  271 (341)
                      ...   +.  .+++|+.+.+.++. +..+|..+  +++|+.|+++++......+.....++.+++|+++++ .++.++ .
T Consensus       143 ~~~---~~--~l~~L~~l~l~~n~-l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n-~l~~~~~~  213 (305)
T d1xkua_         143 NGA---FQ--GMKKLSYIRIADTN-ITTIPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFN-SISAVDNG  213 (305)
T ss_dssp             TTG---GG--GCTTCCEEECCSSC-CCSCCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSS-CCCEECTT
T ss_pred             ccc---cc--cccccCccccccCC-ccccCccc--CCccCEEECCCCcCCCCChhHhhccccccccccccc-cccccccc
Confidence            000   11  34568899998864 45565544  589999999987544443333334568999999986 577774 4


Q ss_pred             hhccCCCcCeEeecCCCCCccCCCC-CCCCCccEEEeecCCCCCccccc------cccCCCceeEEEEeC
Q 019416          272 QIHKATSLQDLSVSGCPSLMSFPHG-GLPPNLISLGIIDCENLIPLSQW------ELHKLKHLNKYTILG  334 (341)
Q Consensus       272 ~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~l~~c~~~~~~~~~------~i~~~~~L~~l~l~~  334 (341)
                      .+..+++|++|++++| .++.+|.. .-.++|++|+++++. ++..+..      ......+|+.+++++
T Consensus       214 ~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~  281 (305)
T d1xkua_         214 SLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFS  281 (305)
T ss_dssp             TGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCS
T ss_pred             cccccccceeeecccc-cccccccccccccCCCEEECCCCc-cCccChhhccCcchhcccCCCCEEECCC
Confidence            6788999999999986 68888765 346899999999974 5432211      134568899999998

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.7e-13  Score=114.80  Aligned_cols=188  Identities=20%  Similarity=0.200  Sum_probs=99.6

Q ss_pred             CCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCCCCCccE
Q 019416           39 GETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKR  114 (341)
Q Consensus        39 ~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~  114 (341)
                      ...+.+++.++ ..++.+|..+.  +++++|++++ +.+..+    +..  +++|++|+++++ .+..++..+.+++|++
T Consensus         9 ~~~~~~v~C~~-~~L~~iP~~lp--~~l~~L~Ls~-N~i~~l~~~~f~~--l~~L~~L~L~~N-~l~~l~~~~~l~~L~~   81 (266)
T d1p9ag_           9 VASHLEVNCDK-RNLTALPPDLP--KDTTILHLSE-NLLYTFSLATLMP--YTRLTQLNLDRA-ELTKLQVDGTLPVLGT   81 (266)
T ss_dssp             STTCCEEECTT-SCCSSCCSCCC--TTCCEEECTT-SCCSEEEGGGGTT--CTTCCEEECTTS-CCCEEECCSCCTTCCE
T ss_pred             cCCCeEEEccC-CCCCeeCcCcC--cCCCEEECcC-CcCCCcCHHHhhc--cccccccccccc-cccccccccccccccc
Confidence            33344445554 34555554332  4667777766 344443    556  667777777664 5556655555667777


Q ss_pred             EEEeCCCChHHHHHHhhhhcc--cccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCCcC
Q 019416          115 LKICDCTNAELILKVLMDQKG--LALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGP  190 (341)
Q Consensus       115 L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~  190 (341)
                      |++++|. +..    .+....  ++|+.|+++++ .+..++..  ..+.+++.|++.++ .+..++...           
T Consensus        82 L~Ls~N~-l~~----~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~l~~l~~L~l~~n-~l~~l~~~~-----------  143 (266)
T d1p9ag_          82 LDLSHNQ-LQS----LPLLGQTLPALTVLDVSFN-RLTSLPLGALRGLGELQELYLKGN-ELKTLPPGL-----------  143 (266)
T ss_dssp             EECCSSC-CSS----CCCCTTTCTTCCEEECCSS-CCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTT-----------
T ss_pred             ccccccc-ccc----ccccccccccccccccccc-ccceeecccccccccccccccccc-ccceecccc-----------
Confidence            7777664 222    222222  56666666553 33333322  33455666666543 232222100           


Q ss_pred             CCcccccccccccccccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccC
Q 019416          191 EGESSLENMTSSHTLELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISEC  263 (341)
Q Consensus       191 ~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~  263 (341)
                              +  ..+++++.++++++ .+..+ +..+..+++|++|+++++ .++.+|++.+.+++|+.|+++++
T Consensus       144 --------~--~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         144 --------L--TPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             --------T--TTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred             --------c--cccccchhcccccc-cccccCccccccccccceeecccC-CCcccChhHCCCCCCCEEEecCC
Confidence                    0  02234666666664 33333 344566677777777764 36666665555667777777654

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.47  E-value=1.7e-14  Score=126.85  Aligned_cols=226  Identities=15%  Similarity=0.056  Sum_probs=155.6

Q ss_pred             cccCCCCCCCcCeEEcCCCCCCc-cccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC-
Q 019416           32 KILGIRTGETLESLEIDNLSSLA-SFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ-  105 (341)
Q Consensus        32 ~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~-  105 (341)
                      ++..++.+++|++|++++++.++ .+|.++..+++|++|+++++ .+...    +..  +.+|+.++++.+.....+|. 
T Consensus        68 lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N-~l~~~~~~~~~~--~~~L~~l~l~~N~~~~~~p~~  144 (313)
T d1ogqa_          68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQ--IKTLVTLDFSYNALSGTLPPS  144 (313)
T ss_dssp             CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGG--CTTCCEEECCSSEEESCCCGG
T ss_pred             CChHHhcCccccccccccccccccccccccccccccchhhhccc-cccccccccccc--hhhhcccccccccccccCchh
Confidence            45678899999999999755555 68888999999999999995 44443    778  99999999998755555553 


Q ss_pred             CCCCCCccEEEEeCCCChHHHHHHhhhhcc--cc-cceEeecCCCCccccCCCC-CccccceEEeeccCCccccCcceee
Q 019416          106 DYFPTTLKRLKICDCTNAELILKVLMDQKG--LA-LESLEVDGCSSLFSLPINQ-LPATLRHLRIVNCMNLKSLGESSKI  181 (341)
Q Consensus       106 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~-L~~L~l~~~~~l~~l~~~~-~~~~L~~L~l~~~~~l~~~~~~l~l  181 (341)
                      ...++.++.++++++.....    +|...+  .. ++.+++.+ +.++...... .-.....+++.++.....++..   
T Consensus       145 l~~l~~L~~l~l~~n~l~~~----ip~~~~~l~~l~~~l~~~~-n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~---  216 (313)
T d1ogqa_         145 ISSLPNLVGITFDGNRISGA----IPDSYGSFSKLFTSMTISR-NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVL---  216 (313)
T ss_dssp             GGGCTTCCEEECCSSCCEEE----CCGGGGCCCTTCCEEECCS-SEEEEECCGGGGGCCCSEEECCSSEEEECCGGG---
T ss_pred             hccCcccceeeccccccccc----ccccccccccccccccccc-ccccccccccccccccccccccccccccccccc---
Confidence            45589999999999876555    666665  34 46777766 4555443321 1113334555443222222110   


Q ss_pred             eCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecc
Q 019416          182 RNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLIS  261 (341)
Q Consensus       182 ~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~  261 (341)
                                       .  ..++.++.+++.++..... +..+..+++|+.|+++++.-...+|.....+++|++|+++
T Consensus       217 -----------------~--~~~~~l~~l~~~~~~l~~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls  276 (313)
T d1ogqa_         217 -----------------F--GSDKNTQKIHLAKNSLAFD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS  276 (313)
T ss_dssp             -----------------C--CTTSCCSEEECCSSEECCB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECC
T ss_pred             -----------------c--ccccccccccccccccccc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECc
Confidence                             0  1334588999888654333 4567778999999999975433677655556799999999


Q ss_pred             cCcccc-cchhhhccCCCcCeEeecCCCCC
Q 019416          262 ECENLM-SLPHQIHKATSLQDLSVSGCPSL  290 (341)
Q Consensus       262 ~~~~l~-~l~~~l~~l~~L~~L~l~~c~~l  290 (341)
                      ++ +++ .+|+ +..+++|+.+++++++.+
T Consensus       277 ~N-~l~g~iP~-~~~L~~L~~l~l~~N~~l  304 (313)
T d1ogqa_         277 FN-NLCGEIPQ-GGNLQRFDVSAYANNKCL  304 (313)
T ss_dssp             SS-EEEEECCC-STTGGGSCGGGTCSSSEE
T ss_pred             CC-cccccCCC-cccCCCCCHHHhCCCccc
Confidence            96 466 6774 567788999999886544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.41  E-value=6.8e-13  Score=110.94  Aligned_cols=188  Identities=12%  Similarity=0.113  Sum_probs=106.6

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCcc
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLK  113 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~  113 (341)
                      +..+.+|+.|++.+| .++.+. .+..+++|++|+++++ .+..+  +..  +++|++++++++ .+..++....+++|+
T Consensus        37 ~~~l~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~ls~n-~i~~~~~l~~--l~~l~~l~~~~n-~~~~i~~l~~l~~L~  110 (227)
T d1h6ua2          37 QADLDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDN-QITDLAPLKN--LTKITELELSGN-PLKNVSAIAGLQSIK  110 (227)
T ss_dssp             HHHHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTT--CCSCCEEECCSC-CCSCCGGGTTCTTCC
T ss_pred             HHHcCCcCEEECCCC-CCCcch-hHhcCCCCcEeecCCc-eeeccccccc--cccccccccccc-ccccccccccccccc
Confidence            345667777777765 344542 3566777777777773 44444  666  777777777664 445555445566666


Q ss_pred             EEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCc
Q 019416          114 RLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGE  193 (341)
Q Consensus       114 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~  193 (341)
                      .+.++++.....     +                      .....+.++.+.++.+. +.....                
T Consensus       111 ~l~l~~~~~~~~-----~----------------------~~~~~~~~~~l~~~~~~-~~~~~~----------------  146 (227)
T d1h6ua2         111 TLDLTSTQITDV-----T----------------------PLAGLSNLQVLYLDLNQ-ITNISP----------------  146 (227)
T ss_dssp             EEECTTSCCCCC-----G----------------------GGTTCTTCCEEECCSSC-CCCCGG----------------
T ss_pred             cccccccccccc-----c----------------------hhccccchhhhhchhhh-hchhhh----------------
Confidence            666666543221     1                      11112233333333321 110000                


Q ss_pred             ccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhh
Q 019416          194 SSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQI  273 (341)
Q Consensus       194 ~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l  273 (341)
                           +  ..+++|+.|.+.++.. ... ..++++++|+.|++++| .++.++. ...+++|++|++++| +++.++ .+
T Consensus       147 -----~--~~~~~L~~L~l~~n~~-~~~-~~l~~l~~L~~L~Ls~n-~l~~l~~-l~~l~~L~~L~Ls~N-~lt~i~-~l  213 (227)
T d1h6ua2         147 -----L--AGLTNLQYLSIGNAQV-SDL-TPLANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNN-QISDVS-PL  213 (227)
T ss_dssp             -----G--GGCTTCCEEECCSSCC-CCC-GGGTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTS-CCCBCG-GG
T ss_pred             -----h--cccccccccccccccc-ccc-hhhcccccceecccCCC-ccCCChh-hcCCCCCCEEECcCC-cCCCCc-cc
Confidence                 0  1223467777766532 222 23566778888888776 4555543 122358888888886 588777 47


Q ss_pred             ccCCCcCeEeecC
Q 019416          274 HKATSLQDLSVSG  286 (341)
Q Consensus       274 ~~l~~L~~L~l~~  286 (341)
                      +.+++|+.|++++
T Consensus       214 ~~l~~L~~L~lsn  226 (227)
T d1h6ua2         214 ANTSNLFIVTLTN  226 (227)
T ss_dssp             TTCTTCCEEEEEE
T ss_pred             ccCCCCCEEEeeC
Confidence            7888888888863

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.2e-11  Score=106.86  Aligned_cols=193  Identities=16%  Similarity=0.143  Sum_probs=96.9

Q ss_pred             CCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCC--CCCCc
Q 019416           40 ETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDY--FPTTL  112 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L  112 (341)
                      +.+++|+|+++ .++.+|. ++.++++|++|++++ +.+..+    +..  +..++.+.+.....+..++...  .+++|
T Consensus        32 ~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~-n~l~~i~~~~~~~--~~~~~~l~~~~~~~~~~l~~~~~~~l~~L  107 (284)
T d1ozna_          32 AASQRIFLHGN-RISHVPAASFRACRNLTILWLHS-NVLARIDAAAFTG--LALLEQLDLSDNAQLRSVDPATFHGLGRL  107 (284)
T ss_dssp             TTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTT--CTTCCEEECCSCTTCCCCCTTTTTTCTTC
T ss_pred             CCCCEEECcCC-cCCCCCHHHhhcccccccccccc-ccccccccccccc--cccccccccccccccccccchhhcccccC
Confidence            34666666664 4455543 355566666666665 334333    444  5555565555444454443322  24555


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcccccceEeecCCCCccccCCC--CCccccceEEeeccCCccccCcceeeeCCCCCCcC
Q 019416          113 KRLKICDCTNAELILKVLMDQKGLALESLEVDGCSSLFSLPIN--QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGP  190 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~--~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~  190 (341)
                      ++|+++++..                           ..++..  ...++|+.+++.++ .++.++..            
T Consensus       108 ~~L~l~~n~~---------------------------~~~~~~~~~~~~~L~~l~l~~N-~l~~i~~~------------  147 (284)
T d1ozna_         108 HTLHLDRCGL---------------------------QELGPGLFRGLAALQYLYLQDN-ALQALPDD------------  147 (284)
T ss_dssp             CEEECTTSCC---------------------------CCCCTTTTTTCTTCCEEECCSS-CCCCCCTT------------
T ss_pred             CEEecCCccc---------------------------ccccccccchhcccchhhhccc-cccccChh------------
Confidence            5555555442                           222111  22334455555442 22222210            


Q ss_pred             CCcccccccccccccccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccc
Q 019416          191 EGESSLENMTSSHTLELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSL  269 (341)
Q Consensus       191 ~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l  269 (341)
                        .     +  ..+++|+.|+++++ .+..+ +..+..+++|+.++++++......+.....+++|++|+++++ .+..+
T Consensus       148 --~-----f--~~~~~L~~L~l~~N-~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~  216 (284)
T d1ozna_         148 --T-----F--RDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSAL  216 (284)
T ss_dssp             --T-----T--TTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCC
T ss_pred             --H-----h--ccccchhhcccccC-cccccchhhhccccccchhhhhhccccccChhHhhhhhhccccccccc-ccccc
Confidence              0     0  02224666666664 33444 345566677777777765433322333333457777777764 35555


Q ss_pred             h-hhhccCCCcCeEeecCC
Q 019416          270 P-HQIHKATSLQDLSVSGC  287 (341)
Q Consensus       270 ~-~~l~~l~~L~~L~l~~c  287 (341)
                      + ..+..+++|++|+++++
T Consensus       217 ~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         217 PTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             CHHHHTTCTTCCEEECCSS
T ss_pred             cccccccccccCEEEecCC
Confidence            4 35667777777777663

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.7e-11  Score=104.90  Aligned_cols=190  Identities=18%  Similarity=0.151  Sum_probs=113.8

Q ss_pred             CcceEeeecCCCCccccCCCCCCCccEEEEeCCCChHHHHHHhhhh-cc--cccceEeecCCCCccccCCCCCccccceE
Q 019416           88 SLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDCTNAELILKVLMDQ-KG--LALESLEVDGCSSLFSLPINQLPATLRHL  164 (341)
Q Consensus        88 ~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~--~~L~~L~l~~~~~l~~l~~~~~~~~L~~L  164 (341)
                      .+.+++.++ ..++.+|. ..++++++|+++++. +..    ++.. +.  ++|++|++++ +.++.++....+++|+.|
T Consensus        11 ~~~~v~C~~-~~L~~iP~-~lp~~l~~L~Ls~N~-i~~----l~~~~f~~l~~L~~L~L~~-N~l~~l~~~~~l~~L~~L   82 (266)
T d1p9ag_          11 SHLEVNCDK-RNLTALPP-DLPKDTTILHLSENL-LYT----FSLATLMPYTRLTQLNLDR-AELTKLQVDGTLPVLGTL   82 (266)
T ss_dssp             TCCEEECTT-SCCSSCCS-CCCTTCCEEECTTSC-CSE----EEGGGGTTCTTCCEEECTT-SCCCEEECCSCCTTCCEE
T ss_pred             CCeEEEccC-CCCCeeCc-CcCcCCCEEECcCCc-CCC----cCHHHhhcccccccccccc-cccccccccccccccccc
Confidence            344444444 34555653 234667777777764 333    4432 22  6777777776 366666665666777877


Q ss_pred             EeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCce
Q 019416          165 RIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLES  244 (341)
Q Consensus       165 ~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~  244 (341)
                      +++++. +...+..                    +  ..+++|+.|+++++......+..+..+++++.|+++++ .+..
T Consensus        83 ~Ls~N~-l~~~~~~--------------------~--~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n-~l~~  138 (266)
T d1p9ag_          83 DLSHNQ-LQSLPLL--------------------G--QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN-ELKT  138 (266)
T ss_dssp             ECCSSC-CSSCCCC--------------------T--TTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTS-CCCC
T ss_pred             cccccc-ccccccc--------------------c--ccccccccccccccccceeecccccccccccccccccc-ccce
Confidence            777652 3322210                    0  12335777777776543333455566777888888775 3555


Q ss_pred             ecCCC-CCCCCcceEecccCcccccchh-hhccCCCcCeEeecCCCCCccCCCCCC-CCCccEEEeecCC
Q 019416          245 FPEGG-LPNTSLTSLLISECENLMSLPH-QIHKATSLQDLSVSGCPSLMSFPHGGL-PPNLISLGIIDCE  311 (341)
Q Consensus       245 ~~~~~-~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L~l~~c~~l~~~~~~~~-~~~L~~L~l~~c~  311 (341)
                      ++... ..+++++.++++++ +++.++. .+..+++|++|+++++ .++.+|...+ .++|+.|++++++
T Consensus       139 l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~lp~~~~~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         139 LPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNP  206 (266)
T ss_dssp             CCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSCC
T ss_pred             eccccccccccchhcccccc-cccccCccccccccccceeecccC-CCcccChhHCCCCCCCEEEecCCC
Confidence            55433 22467888888775 5666653 4677788888888774 5777776533 5678888887643

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.35  E-value=1.8e-10  Score=101.54  Aligned_cols=58  Identities=31%  Similarity=0.358  Sum_probs=39.9

Q ss_pred             CCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEEEeecCCCCCcccc
Q 019416          253 TSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISLGIIDCENLIPLSQ  318 (341)
Q Consensus       253 ~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L~l~~c~~~~~~~~  318 (341)
                      ++|++|++++| +++.+|.   .+++|+.|++++| .+++++.  .+++|++|++++|+ ++..++
T Consensus       284 ~~L~~L~Ls~N-~l~~lp~---~~~~L~~L~L~~N-~L~~l~~--~~~~L~~L~L~~N~-L~~lp~  341 (353)
T d1jl5a_         284 PSLEELNVSNN-KLIELPA---LPPRLERLIASFN-HLAEVPE--LPQNLKQLHVEYNP-LREFPD  341 (353)
T ss_dssp             TTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CSSCCC
T ss_pred             CCCCEEECCCC-ccCcccc---ccCCCCEEECCCC-cCCcccc--ccCCCCEEECcCCc-CCCCCc
Confidence            57888888875 4777773   3567788888664 5777764  46678888887775 555543

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.34  E-value=3.3e-12  Score=105.44  Aligned_cols=120  Identities=15%  Similarity=0.090  Sum_probs=68.7

Q ss_pred             CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCccEE
Q 019416           38 TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRL  115 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L  115 (341)
                      .+.+|++|+++++ .++.++ .+..+++|++|++++| ++.++  ++.  +++|++|++++| .+..++....+++|+.|
T Consensus        44 ~L~~L~~L~l~~~-~i~~l~-~l~~l~~L~~L~L~~n-~i~~l~~~~~--l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L  117 (210)
T d1h6ta2          44 ELNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGN-KLTDIKPLAN--LKNLGWLFLDEN-KVKDLSSLKDLKKLKSL  117 (210)
T ss_dssp             HHHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTT--CTTCCEEECCSS-CCCCGGGGTTCTTCCEE
T ss_pred             HhcCccEEECcCC-CCCCch-hHhhCCCCCEEeCCCc-cccCcccccc--Cccccccccccc-ccccccccccccccccc
Confidence            3567777888765 344433 2455777777777774 45554  666  777777777764 56666655556777777


Q ss_pred             EEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeecc
Q 019416          116 KICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNC  169 (341)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~  169 (341)
                      ++.++... .    ++.... ++++.+++.++ .++..+....+++|+.++++++
T Consensus       118 ~l~~~~~~-~----~~~l~~l~~l~~l~~~~n-~l~~~~~~~~l~~L~~l~l~~n  166 (210)
T d1h6ta2         118 SLEHNGIS-D----INGLVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDN  166 (210)
T ss_dssp             ECTTSCCC-C----CGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS
T ss_pred             cccccccc-c----cccccccccccccccccc-cccccccccccccccccccccc
Confidence            77766522 2    222111 55666666542 3433333333445555555543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.33  E-value=3.3e-12  Score=106.70  Aligned_cols=96  Identities=15%  Similarity=0.161  Sum_probs=46.4

Q ss_pred             ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeec
Q 019416          206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVS  285 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~  285 (341)
                      .++.+.++++... .. ..+..+++|++|++++|. +...+. ...+++|++|+++++ +++.++ .+..+++|++|+++
T Consensus       130 ~~~~l~~~~~~~~-~~-~~~~~~~~L~~L~l~~n~-~~~~~~-l~~l~~L~~L~Ls~n-~l~~l~-~l~~l~~L~~L~Ls  203 (227)
T d1h6ua2         130 NLQVLYLDLNQIT-NI-SPLAGLTNLQYLSIGNAQ-VSDLTP-LANLSKLTTLKADDN-KISDIS-PLASLPNLIEVHLK  203 (227)
T ss_dssp             TCCEEECCSSCCC-CC-GGGGGCTTCCEEECCSSC-CCCCGG-GTTCTTCCEEECCSS-CCCCCG-GGGGCTTCCEEECT
T ss_pred             chhhhhchhhhhc-hh-hhhccccccccccccccc-cccchh-hcccccceecccCCC-ccCCCh-hhcCCCCCCEEECc
Confidence            3566666554322 11 223445666666666643 221111 111246666666664 455554 25556666666666


Q ss_pred             CCCCCccCCCCCCCCCccEEEee
Q 019416          286 GCPSLMSFPHGGLPPNLISLGII  308 (341)
Q Consensus       286 ~c~~l~~~~~~~~~~~L~~L~l~  308 (341)
                      +| .+++++.-...++|+.|+++
T Consensus       204 ~N-~lt~i~~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         204 NN-QISDVSPLANTSNLFIVTLT  225 (227)
T ss_dssp             TS-CCCBCGGGTTCTTCCEEEEE
T ss_pred             CC-cCCCCcccccCCCCCEEEee
Confidence            54 45554432233455555443

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.7e-11  Score=103.60  Aligned_cols=194  Identities=20%  Similarity=0.214  Sum_probs=119.3

Q ss_pred             CCCcceEeeecCCCCccccCC--CCCCCccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccCCC--CCc
Q 019416           86 YTSLEYLEFSSCLFFSNSKQD--YFPTTLKRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLPIN--QLP  158 (341)
Q Consensus        86 l~~L~~L~l~~~~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~--~~~  158 (341)
                      ..++++|+++++ .+..++..  ..+++|++|+++++. +..    ++....   ..+..+.....+.++.++..  ..+
T Consensus        31 p~~~~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~ls~n~-l~~----i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l  104 (284)
T d1ozna_          31 PAASQRIFLHGN-RISHVPAASFRACRNLTILWLHSNV-LAR----IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGL  104 (284)
T ss_dssp             CTTCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCE----ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTC
T ss_pred             CCCCCEEECcCC-cCCCCCHHHhhcccccccccccccc-ccc----cccccccccccccccccccccccccccchhhccc
Confidence            456788888874 67777653  336788888888765 332    322222   56666666666666666544  345


Q ss_pred             cccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCCCccc-ccCCCCCCcCeEEee
Q 019416          159 ATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEFLP-EDMHNFTDLNLLSIS  237 (341)
Q Consensus       159 ~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~l~-~~~~~l~~L~~L~l~  237 (341)
                      ++|+.|+++++. +..++.              ..     .  ..+++|+.+++.++ .++.++ ..+..+++|+.|+++
T Consensus       105 ~~L~~L~l~~n~-~~~~~~--------------~~-----~--~~~~~L~~l~l~~N-~l~~i~~~~f~~~~~L~~L~l~  161 (284)
T d1ozna_         105 GRLHTLHLDRCG-LQELGP--------------GL-----F--RGLAALQYLYLQDN-ALQALPDDTFRDLGNLTHLFLH  161 (284)
T ss_dssp             TTCCEEECTTSC-CCCCCT--------------TT-----T--TTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECC
T ss_pred             ccCCEEecCCcc-cccccc--------------cc-----c--chhcccchhhhccc-cccccChhHhccccchhhcccc
Confidence            677777777653 121111              00     0  12335778888774 445554 456677788888888


Q ss_pred             cCCCCceecCCCC-CCCCcceEecccCcccccc-hhhhccCCCcCeEeecCCCCCccCCCC--CCCCCccEEEeecCC
Q 019416          238 NCPSLESFPEGGL-PNTSLTSLLISECENLMSL-PHQIHKATSLQDLSVSGCPSLMSFPHG--GLPPNLISLGIIDCE  311 (341)
Q Consensus       238 ~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l-~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~c~  311 (341)
                      ++ .+..++...+ .+++|++++++++. +..+ |..+..+++|++|+++++ .+..++..  +-.++|+.|++++++
T Consensus       162 ~N-~l~~l~~~~f~~l~~L~~l~l~~N~-l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N~  236 (284)
T d1ozna_         162 GN-RISSVPERAFRGLHSLDRLLLHQNR-VAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNP  236 (284)
T ss_dssp             SS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred             cC-cccccchhhhccccccchhhhhhcc-ccccChhHhhhhhhccccccccc-ccccccccccccccccCEEEecCCC
Confidence            75 4666655432 35678888888753 5444 567777888888888763 55555543  335678888887643

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=2.2e-11  Score=102.42  Aligned_cols=74  Identities=16%  Similarity=0.184  Sum_probs=36.2

Q ss_pred             eEEcCCCCCCccccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCC--CCCCccEEEE
Q 019416           44 SLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDY--FPTTLKRLKI  117 (341)
Q Consensus        44 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l  117 (341)
                      +++.++ ..++.+|..+.  +++++|++++ +.+..+    +..  +++|++|+++++.....++...  .++.++++.+
T Consensus        12 ~i~c~~-~~l~~iP~~l~--~~l~~L~Ls~-n~i~~l~~~~f~~--l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          12 VFLCQE-SKVTEIPSDLP--RNAIELRFVL-TKLRVIQKGAFSG--FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             EEEEES-CSCSSCCSCSC--SCCSEEEEES-CCCCEECTTTTTT--CTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             EEEEeC-CCCCCcCCCCC--CCCCEEECcC-CcCCccChhHhhc--cchhhhhhhccccccceeeccccccccccccccc
Confidence            444443 23445554321  4566666665 344433    455  6666666666654333333322  2455566655


Q ss_pred             eCCCCh
Q 019416          118 CDCTNA  123 (341)
Q Consensus       118 ~~~~~~  123 (341)
                      .++..+
T Consensus        86 ~~~n~l   91 (242)
T d1xwdc1          86 EKANNL   91 (242)
T ss_dssp             ECCTTC
T ss_pred             cccccc
Confidence            544333

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=3.5e-12  Score=110.29  Aligned_cols=77  Identities=18%  Similarity=0.095  Sum_probs=42.4

Q ss_pred             ccccceEeeccCcCCCc-ccccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCcccccchhhhccCCCcC
Q 019416          204 TLELRELEIWDCLELEF-LPEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLMSLPHQIHKATSLQ  280 (341)
Q Consensus       204 ~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~  280 (341)
                      +++|++|++++|..++. ....+..+++|++|++++|..++.-.. ....+++|++|++++|..-..+......+++|+
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L~  252 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ  252 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTSE
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCcccc
Confidence            34577777777665542 334555667777777777766542211 111235777777777633333433334555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.30  E-value=6.7e-12  Score=102.60  Aligned_cols=119  Identities=15%  Similarity=0.158  Sum_probs=66.0

Q ss_pred             CCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCCCccEE
Q 019416           38 TGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRL  115 (341)
Q Consensus        38 ~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L  115 (341)
                      .++++++|+++++ .++.+. .+..+++|++|++++| .+.++  ++.  +++|++|+++++ ....++....++.|+.|
T Consensus        38 ~l~~l~~L~l~~~-~i~~l~-~l~~l~nL~~L~Ls~N-~l~~~~~l~~--l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRL-GIKSID-GVEYLNNLTQINFSNN-QLTDITPLKN--LTKLVDILMNNN-QIADITPLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSS-CCCCCGGGTT--CTTCCEEECCSS-CCCCCGGGTTCTTCSEE
T ss_pred             HhcCCCEEECCCC-CCCCcc-ccccCCCcCcCccccc-cccCcccccC--Cccccccccccc-ccccccccccccccccc
Confidence            4677788888775 344432 2455777777777774 55554  666  777777777764 45555555556777777


Q ss_pred             EEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeec
Q 019416          116 KICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVN  168 (341)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~  168 (341)
                      +++++.....     +.... ++|+.|+++++ .+..++.....++|+.|++.+
T Consensus       112 ~l~~~~~~~~-----~~~~~l~~L~~L~l~~n-~l~~~~~l~~~~~L~~L~l~~  159 (199)
T d2omxa2         112 TLFNNQITDI-----DPLKNLTNLNRLELSSN-TISDISALSGLTSLQQLNFSS  159 (199)
T ss_dssp             ECCSSCCCCC-----GGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCS
T ss_pred             cccccccccc-----cccchhhhhHHhhhhhh-hhccccccccccccccccccc
Confidence            7776653221     11111 55555555543 333333223334444444443

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.1e-12  Score=109.28  Aligned_cols=178  Identities=15%  Similarity=0.146  Sum_probs=122.7

Q ss_pred             CCCCCCcCeEEcCCCCCCcc-ccccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccC---CC
Q 019416           36 IRTGETLESLEIDNLSSLAS-FLRSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQ---DY  107 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~---~~  107 (341)
                      .....+|++|++++|..... +...+..+++|++|++++|. +.+.    +..  +++|++|++++|..+.....   ..
T Consensus        42 ~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~~--~~~L~~L~Ls~c~~itd~~l~~l~~  118 (284)
T d2astb2          42 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAK--NSNLVRLNLSGCSGFSEFALQTLLS  118 (284)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTT--CTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             hccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHhc--CCCCcCccccccccccccccchhhH
Confidence            34567899999998753322 33336678999999999974 4332    778  99999999999877764321   23


Q ss_pred             CCCCccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCC-CccccCC--C-CCccccceEEeeccCCccccCccee
Q 019416          108 FPTTLKRLKICDCTNAELILKVLMDQKG---LALESLEVDGCS-SLFSLPI--N-QLPATLRHLRIVNCMNLKSLGESSK  180 (341)
Q Consensus       108 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~-~l~~l~~--~-~~~~~L~~L~l~~~~~l~~~~~~l~  180 (341)
                      .+++|++|++++|..+...  .+...+.   ++|+.|++++|. .++....  . ..+++|++|++++|..++.-.    
T Consensus       119 ~~~~L~~L~ls~c~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~----  192 (284)
T d2astb2         119 SCSRLDELNLSWCFDFTEK--HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC----  192 (284)
T ss_dssp             HCTTCCEEECCCCTTCCHH--HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG----
T ss_pred             HHHhccccccccccccccc--cchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchh----
Confidence            4799999999999766431  0222222   789999999863 3432211  1 345789999998887664221    


Q ss_pred             eeCCCCCCcCCCcccccccccccccccceEeeccCcCCCc-ccccCCCCCCcCeEEeecC
Q 019416          181 IRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLELEF-LPEDMHNFTDLNLLSISNC  239 (341)
Q Consensus       181 l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~L~~L~l~~c  239 (341)
                                     +..+.  .+++|++|++++|..+.. ....+..+++|+.|++++|
T Consensus       193 ---------------~~~l~--~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         193 ---------------FQEFF--QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             ---------------GGGGG--GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ---------------hhhhc--ccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence                           11122  455799999999987754 2355677899999999987

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=4.7e-10  Score=94.00  Aligned_cols=78  Identities=15%  Similarity=0.097  Sum_probs=39.8

Q ss_pred             CCCcceEeeecCCCCccccCCC--CCCCccEEEEeCCCChHHHHHHhhhhcc---cccceEeecCCCCccccCCC--CCc
Q 019416           86 YTSLEYLEFSSCLFFSNSKQDY--FPTTLKRLKICDCTNAELILKVLMDQKG---LALESLEVDGCSSLFSLPIN--QLP  158 (341)
Q Consensus        86 l~~L~~L~l~~~~~l~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~l~~l~~~--~~~  158 (341)
                      .+++++|+++++ .+..++...  .+++|++|+++++.....    ++....   +.++++.+..++.+..++..  ..+
T Consensus        28 ~~~l~~L~Ls~n-~i~~l~~~~f~~l~~L~~L~ls~n~~~~~----i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l  102 (242)
T d1xwdc1          28 PRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEV----IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNL  102 (242)
T ss_dssp             CSCCSEEEEESC-CCCEECTTTTTTCTTCCEEEEESCTTCCE----ECSSSEESCTTCCEEEEECCTTCCEECTTSEECC
T ss_pred             CCCCCEEECcCC-cCCccChhHhhccchhhhhhhccccccce----eecccccccccccccccccccccccccccccccc
Confidence            346666666664 455555432  256666666666654332    322211   55555555554555444433  234


Q ss_pred             cccceEEeec
Q 019416          159 ATLRHLRIVN  168 (341)
Q Consensus       159 ~~L~~L~l~~  168 (341)
                      ++|+.+++.+
T Consensus       103 ~~L~~l~l~~  112 (242)
T d1xwdc1         103 PNLQYLLISN  112 (242)
T ss_dssp             TTCCEEEEES
T ss_pred             ccccccccch
Confidence            4555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.19  E-value=2.6e-10  Score=92.88  Aligned_cols=160  Identities=19%  Similarity=0.192  Sum_probs=93.9

Q ss_pred             cccceEeecCCCCccccCCCCCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccC
Q 019416          136 LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDC  215 (341)
Q Consensus       136 ~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~  215 (341)
                      +++++|+++++ .++.++....+++|++|+++++ .++.++.                     +  ..+++|+.|+++++
T Consensus        40 ~~l~~L~l~~~-~i~~l~~l~~l~nL~~L~Ls~N-~l~~~~~---------------------l--~~l~~L~~L~l~~n   94 (199)
T d2omxa2          40 DQVTTLQADRL-GIKSIDGVEYLNNLTQINFSNN-QLTDITP---------------------L--KNLTKLVDILMNNN   94 (199)
T ss_dssp             TTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSS-CCCCCGG---------------------G--TTCTTCCEEECCSS
T ss_pred             cCCCEEECCCC-CCCCccccccCCCcCcCccccc-cccCccc---------------------c--cCCccccccccccc
Confidence            45555665553 4444433345566777777664 3333221                     1  13335777777765


Q ss_pred             cCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCC
Q 019416          216 LELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPH  295 (341)
Q Consensus       216 ~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~  295 (341)
                      . ...++ .+..++.|+.|+++++.... .+. ...+++|+.++++++ .+..++ .+..+++|+.|++.+| .++.++.
T Consensus        95 ~-~~~~~-~l~~l~~L~~L~l~~~~~~~-~~~-~~~l~~L~~L~l~~n-~l~~~~-~l~~~~~L~~L~l~~n-~l~~l~~  167 (199)
T d2omxa2          95 Q-IADIT-PLANLTNLTGLTLFNNQITD-IDP-LKNLTNLNRLELSSN-TISDIS-ALSGLTSLQQLNFSSN-QVTDLKP  167 (199)
T ss_dssp             C-CCCCG-GGTTCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSS-CCCCCG-GGTTCTTCSEEECCSS-CCCCCGG
T ss_pred             c-ccccc-cccccccccccccccccccc-ccc-cchhhhhHHhhhhhh-hhcccc-cccccccccccccccc-cccCCcc
Confidence            3 33443 36667788888887764332 221 122357888888775 466665 5677788888888764 5666654


Q ss_pred             CCCCCCccEEEeecCCCCCccccccccCCCceeEE
Q 019416          296 GGLPPNLISLGIIDCENLIPLSQWELHKLKHLNKY  330 (341)
Q Consensus       296 ~~~~~~L~~L~l~~c~~~~~~~~~~i~~~~~L~~l  330 (341)
                      -+..++|++|++++|. ++..+  .+.++++|++|
T Consensus       168 l~~l~~L~~L~ls~N~-i~~i~--~l~~L~~L~~L  199 (199)
T d2omxa2         168 LANLTTLERLDISSNK-VSDIS--VLAKLTNLESL  199 (199)
T ss_dssp             GTTCTTCCEEECCSSC-CCCCG--GGGGCTTCSEE
T ss_pred             ccCCCCCCEEECCCCC-CCCCc--cccCCCCCCcC
Confidence            3446788888888773 55443  24667777764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.15  E-value=1.2e-10  Score=95.80  Aligned_cols=130  Identities=13%  Similarity=0.106  Sum_probs=99.9

Q ss_pred             ccCCCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCCCCC
Q 019416           33 ILGIRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDYFPT  110 (341)
Q Consensus        33 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~  110 (341)
                      ..++..+++|++|++++| .++.++. +..+++|+.|++++| +++++  +..  +++|+.|+++++ ....++....++
T Consensus        61 l~~l~~l~~L~~L~L~~n-~i~~l~~-~~~l~~L~~L~l~~n-~i~~l~~l~~--l~~L~~L~l~~~-~~~~~~~l~~l~  134 (210)
T d1h6ta2          61 VQGIQYLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDEN-KVKDLSSLKD--LKKLKSLSLEHN-GISDINGLVHLP  134 (210)
T ss_dssp             CTTGGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSS-CCCCGGGGTT--CTTCCEEECTTS-CCCCCGGGGGCT
T ss_pred             chhHhhCCCCCEEeCCCc-cccCccc-cccCccccccccccc-cccccccccc--cccccccccccc-cccccccccccc
Confidence            346778999999999986 5666654 677899999999984 67666  888  999999999886 556666666789


Q ss_pred             CccEEEEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCCCCCccccceEEeeccCCcccc
Q 019416          111 TLKRLKICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPINQLPATLRHLRIVNCMNLKSL  175 (341)
Q Consensus       111 ~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~~~~L~~L~l~~~~~l~~~  175 (341)
                      .++.+.++++.. ..    .+.... ++|+.++++++ .++.++....+++|+.|+++++ .++.+
T Consensus       135 ~l~~l~~~~n~l-~~----~~~~~~l~~L~~l~l~~n-~l~~i~~l~~l~~L~~L~Ls~N-~i~~l  193 (210)
T d1h6ta2         135 QLESLYLGNNKI-TD----ITVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYLSKN-HISDL  193 (210)
T ss_dssp             TCCEEECCSSCC-CC----CGGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEECCSS-CCCBC
T ss_pred             cccccccccccc-cc----cccccccccccccccccc-cccccccccCCCCCCEEECCCC-CCCCC
Confidence            999999998863 32    322222 89999999885 6666665566789999999886 45544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.13  E-value=1.5e-08  Score=88.89  Aligned_cols=72  Identities=26%  Similarity=0.340  Sum_probs=56.6

Q ss_pred             CCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCCCCccCCCCCCCCCccEE
Q 019416          226 HNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCPSLMSFPHGGLPPNLISL  305 (341)
Q Consensus       226 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~L  305 (341)
                      ..+++|++|++++| .+..+|..   +++|++|+++++ +++.+|+   .+++|++|++++| .++++|.  .+.+|+.|
T Consensus       281 ~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N-~L~~l~~---~~~~L~~L~L~~N-~L~~lp~--~~~~L~~L  349 (353)
T d1jl5a_         281 DLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN-PLREFPD--IPESVEDL  349 (353)
T ss_dssp             CCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS-CCSSCCC--CCTTCCEE
T ss_pred             ccCCCCCEEECCCC-ccCccccc---cCCCCEEECCCC-cCCcccc---ccCCCCEEECcCC-cCCCCCc--cccccCee
Confidence            34589999999997 46666642   359999999986 6888884   3568999999986 4888886  67789988


Q ss_pred             Eee
Q 019416          306 GII  308 (341)
Q Consensus       306 ~l~  308 (341)
                      .+.
T Consensus       350 ~~~  352 (353)
T d1jl5a_         350 RMN  352 (353)
T ss_dssp             ECC
T ss_pred             ECc
Confidence            763

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.2e-09  Score=83.23  Aligned_cols=121  Identities=10%  Similarity=0.032  Sum_probs=86.1

Q ss_pred             CCCCCCcCeEEcCCCCCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCC--CCCCC
Q 019416           36 IRTGETLESLEIDNLSSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQD--YFPTT  111 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~--~~~~~  111 (341)
                      +.+..++++|++++| .++.++..+..+++|+.|++++ +.+..+  +..  +++|++|++++| .+..++..  ..+++
T Consensus        14 ~~n~~~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~-N~i~~l~~~~~--l~~L~~L~ls~N-~i~~l~~~~~~~l~~   88 (162)
T d1a9na_          14 YTNAVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSD-NEIRKLDGFPL--LRRLKTLLVNNN-RICRIGEGLDQALPD   88 (162)
T ss_dssp             EECTTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCS-SCCCEECCCCC--CSSCCEEECCSS-CCCEECSCHHHHCTT
T ss_pred             ccCcCcCcEEECCCC-CCCccCccccccccCCEEECCC-CCCCccCCccc--Ccchhhhhcccc-cccCCCccccccccc
Confidence            456778999999985 5677766556789999999999 567666  788  999999999986 56666542  23789


Q ss_pred             ccEEEEeCCCChHHHHHHhhh--hcc--cccceEeecCCCCccccCCC-----CCccccceEEee
Q 019416          112 LKRLKICDCTNAELILKVLMD--QKG--LALESLEVDGCSSLFSLPIN-----QLPATLRHLRIV  167 (341)
Q Consensus       112 L~~L~l~~~~~~~~~~~~~~~--~~~--~~L~~L~l~~~~~l~~l~~~-----~~~~~L~~L~l~  167 (341)
                      |++|++++|. +..    +++  .+.  ++|++|+++++ .++..+..     ..+|+|+.|+-.
T Consensus        89 L~~L~L~~N~-i~~----~~~l~~l~~l~~L~~L~l~~N-~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          89 LTELILTNNS-LVE----LGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CCEEECCSCC-CCC----GGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccceecccc-ccc----cccccccccccccchhhcCCC-ccccccchHHHHHHHCCCcCeeCCC
Confidence            9999999986 333    332  122  88999999885 45555431     334677776543

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=7.7e-09  Score=81.02  Aligned_cols=121  Identities=12%  Similarity=0.138  Sum_probs=90.4

Q ss_pred             ccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhh-hccCCCcCeEee
Q 019416          206 ELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQ-IHKATSLQDLSV  284 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~-l~~l~~L~~L~l  284 (341)
                      ++++|+++++ +++.++..+..+++|+.|+++++ .+..++. ...+++|++|+++++ .++.++.+ +..+++|+.|++
T Consensus        19 ~lr~L~L~~n-~I~~i~~~~~~l~~L~~L~Ls~N-~i~~l~~-~~~l~~L~~L~ls~N-~i~~l~~~~~~~l~~L~~L~L   94 (162)
T d1a9na_          19 RDRELDLRGY-KIPVIENLGATLDQFDAIDFSDN-EIRKLDG-FPLLRRLKTLLVNNN-RICRIGEGLDQALPDLTELIL   94 (162)
T ss_dssp             SCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSS-CCCEECC-CCCCSSCCEEECCSS-CCCEECSCHHHHCTTCCEEEC
T ss_pred             cCcEEECCCC-CCCccCccccccccCCEEECCCC-CCCccCC-cccCcchhhhhcccc-cccCCCcccccccccccccee
Confidence            5899999995 56777766677899999999996 5777743 233579999999996 58888764 467999999999


Q ss_pred             cCCCCCccCCCC---CCCCCccEEEeecCCCCC--ccccccccCCCceeEEE
Q 019416          285 SGCPSLMSFPHG---GLPPNLISLGIIDCENLI--PLSQWELHKLKHLNKYT  331 (341)
Q Consensus       285 ~~c~~l~~~~~~---~~~~~L~~L~l~~c~~~~--~~~~~~i~~~~~L~~l~  331 (341)
                      +++ .+++++..   ...++|++|++.+|+...  ....+.+..+++|+.|+
T Consensus        95 ~~N-~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          95 TNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccc-cccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            885 56666542   236899999999986433  11223467788888875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.69  E-value=2.2e-08  Score=74.60  Aligned_cols=57  Identities=23%  Similarity=0.227  Sum_probs=25.2

Q ss_pred             ccCCCCccEEeccCCCCchhh---hcccCCCCcceEeeecCCCCccccCCCCCCCccEEEEeCC
Q 019416           60 ELAATTVKQLKINKCPDLEVL---LHRMAYTSLEYLEFSSCLFFSNSKQDYFPTTLKRLKICDC  120 (341)
Q Consensus        60 ~~~l~~L~~L~l~~~~~l~~~---~~~~~l~~L~~L~l~~~~~l~~~~~~~~~~~L~~L~l~~~  120 (341)
                      +..+++|++|++++ +.++.+   +..  +++|+.|+++++ .+..++....+++|++|++++|
T Consensus        16 l~~l~~L~~L~ls~-N~l~~lp~~~~~--l~~L~~L~l~~N-~i~~l~~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3          16 LEQLLLVTHLDLSH-NRLRALPPALAA--LRCLEVLQASDN-ALENVDGVANLPRLQELLLCNN   75 (124)
T ss_dssp             GGGGTTCCEEECCS-SCCCCCCGGGGG--CTTCCEEECCSS-CCCCCGGGTTCSSCCEEECCSS
T ss_pred             cccCCCCCEEECCC-CccCcchhhhhh--hhcccccccccc-cccccCccccccccCeEECCCC
Confidence            33444444444444 233332   344  444444444442 3444443334444555554444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.68  E-value=2.7e-08  Score=74.13  Aligned_cols=97  Identities=19%  Similarity=0.180  Sum_probs=58.0

Q ss_pred             eEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeEeecCCC
Q 019416          209 ELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDLSVSGCP  288 (341)
Q Consensus       209 ~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L~l~~c~  288 (341)
                      .|+++++ .++.++ .++.++.|++|+++++ .++.+|.....+++|++|+++++ .++.++ ++..+++|+++++++ +
T Consensus         2 ~L~Ls~n-~l~~l~-~l~~l~~L~~L~ls~N-~l~~lp~~~~~l~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L~l~~-N   75 (124)
T d1dcea3           2 VLHLAHK-DLTVLC-HLEQLLLVTHLDLSHN-RLRALPPALAALRCLEVLQASDN-ALENVD-GVANLPRLQELLLCN-N   75 (124)
T ss_dssp             EEECTTS-CCSSCC-CGGGGTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCG-GGTTCSSCCEEECCS-S
T ss_pred             EEEcCCC-CCCCCc-ccccCCCCCEEECCCC-ccCcchhhhhhhhcccccccccc-cccccC-ccccccccCeEECCC-C
Confidence            4556553 344443 3566677777777764 45556543333457777777763 566665 466777777777766 3


Q ss_pred             CCccCCCC---CCCCCccEEEeecCC
Q 019416          289 SLMSFPHG---GLPPNLISLGIIDCE  311 (341)
Q Consensus       289 ~l~~~~~~---~~~~~L~~L~l~~c~  311 (341)
                      .+..++..   ...++|+++++++++
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCc
Confidence            55555432   224677777776654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.57  E-value=1.7e-07  Score=75.23  Aligned_cols=104  Identities=13%  Similarity=0.093  Sum_probs=79.1

Q ss_pred             ccceEeeccCcCCCcc-cccCCCCCCcCeEEeecCCCCceecC-CCCCCCCcceEecccCcccccchh-hhccCCCcCeE
Q 019416          206 ELRELEIWDCLELEFL-PEDMHNFTDLNLLSISNCPSLESFPE-GGLPNTSLTSLLISECENLMSLPH-QIHKATSLQDL  282 (341)
Q Consensus       206 ~L~~L~l~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~~~~-~~~~~~~L~~L~l~~~~~l~~l~~-~l~~l~~L~~L  282 (341)
                      ++++|+++++.....+ +..|..+++|+.|+++++. +..++. ....+++|++|+++++ +++.++. .+.++++|++|
T Consensus        30 ~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~~~~~~~~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPNAFEGASHIQELQLGEN-KIKEISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEE
T ss_pred             CCCEEEeCCCCCcccccccccCCCceEeeeeccccc-cccccccccccccccceeeeccc-cccccCHHHHhCCCccccc
Confidence            4999999986443334 4566788999999999865 444444 3334679999999985 6888865 57889999999


Q ss_pred             eecCCCCCccCCCCCC--CCCccEEEeecCCC
Q 019416          283 SVSGCPSLMSFPHGGL--PPNLISLGIIDCEN  312 (341)
Q Consensus       283 ~l~~c~~l~~~~~~~~--~~~L~~L~l~~c~~  312 (341)
                      ++++ +.++.++.+.+  .++|+++++++++.
T Consensus       108 ~L~~-N~l~~i~~~~f~~l~~L~~l~L~~N~~  138 (192)
T d1w8aa_         108 NLYD-NQISCVMPGSFEHLNSLTSLNLASNPF  138 (192)
T ss_dssp             ECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred             ccCC-ccccccCHHHhcCCccccccccccccc
Confidence            9988 57888887643  68999999988653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.52  E-value=1.9e-07  Score=74.98  Aligned_cols=98  Identities=13%  Similarity=0.085  Sum_probs=72.6

Q ss_pred             CCcCeEEcCCCCCCcccc-ccccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCCC--CCCc
Q 019416           40 ETLESLEIDNLSSLASFL-RSELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDYF--PTTL  112 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~L  112 (341)
                      +++++|+|+++.....++ ..+.++++|++|+++++ .+..+    +..  +++|++|+++++ .+..++...+  +++|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N-~i~~~~~~~~~~--~~~L~~L~Ls~N-~l~~l~~~~F~~l~~L  104 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFEG--ASHIQELQLGEN-KIKEISNKMFLGLHQL  104 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTTT--CTTCCEEECCSC-CCCEECSSSSTTCTTC
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeecccc-cccccccccccc--ccccceeeeccc-cccccCHHHHhCCCcc
Confidence            679999999864433343 34677899999999884 44443    777  899999999885 7777765433  7999


Q ss_pred             cEEEEeCCCChHHHHHHhhhhcc---cccceEeecCC
Q 019416          113 KRLKICDCTNAELILKVLMDQKG---LALESLEVDGC  146 (341)
Q Consensus       113 ~~L~l~~~~~~~~~~~~~~~~~~---~~L~~L~l~~~  146 (341)
                      ++|+++++. +..    ++....   ++|++|++.++
T Consensus       105 ~~L~L~~N~-l~~----i~~~~f~~l~~L~~l~L~~N  136 (192)
T d1w8aa_         105 KTLNLYDNQ-ISC----VMPGSFEHLNSLTSLNLASN  136 (192)
T ss_dssp             CEEECCSSC-CCE----ECTTSSTTCTTCCEEECTTC
T ss_pred             cccccCCcc-ccc----cCHHHhcCCccccccccccc
Confidence            999999986 444    554433   88999999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.2e-06  Score=67.69  Aligned_cols=103  Identities=18%  Similarity=0.065  Sum_probs=75.0

Q ss_pred             cceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCC-CCCCcceEecccCcccccch-hhhccCCCcCeEee
Q 019416          207 LRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGL-PNTSLTSLLISECENLMSLP-HQIHKATSLQDLSV  284 (341)
Q Consensus       207 L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~-~~~~L~~L~l~~~~~l~~l~-~~l~~l~~L~~L~l  284 (341)
                      .+.++..+ ..+...|..+..+++|++|++.+.+.++.++...+ .+++|+.|+++++ +++.++ ..+..+++|++|++
T Consensus        10 ~~~l~c~~-~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3          10 SSGLRCTR-DGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSCEECCS-SCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEEC
T ss_pred             CCeEEecC-CCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeecc-ccCCcccccccccccccceec
Confidence            45555555 34456677777788888998887667877776433 3568999999885 688885 45788899999999


Q ss_pred             cCCCCCccCCCCCC-CCCccEEEeecCCC
Q 019416          285 SGCPSLMSFPHGGL-PPNLISLGIIDCEN  312 (341)
Q Consensus       285 ~~c~~l~~~~~~~~-~~~L~~L~l~~c~~  312 (341)
                      ++ +.++.++...+ ..+|+.|++++++-
T Consensus        88 s~-N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          88 SF-NALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CS-SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             cC-CCCcccChhhhccccccccccCCCcc
Confidence            87 57888877644 45788999987653

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.7e-06  Score=66.69  Aligned_cols=85  Identities=19%  Similarity=0.187  Sum_probs=59.8

Q ss_pred             ccCCCCCCCcCeEEcCCCCCCccccc-cccCCCCccEEeccCCCCchhh----hcccCCCCcceEeeecCCCCccccCCC
Q 019416           33 ILGIRTGETLESLEIDNLSSLASFLR-SELAATTVKQLKINKCPDLEVL----LHRMAYTSLEYLEFSSCLFFSNSKQDY  107 (341)
Q Consensus        33 ~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~l~~~----~~~~~l~~L~~L~l~~~~~l~~~~~~~  107 (341)
                      +..+..+++|++|++.+++.++.++. ++.++++|+.|++++ +++..+    |..  +++|++|+++++ .+..++...
T Consensus        24 p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~-N~l~~i~~~~f~~--l~~L~~L~Ls~N-~l~~l~~~~   99 (156)
T d2ifga3          24 LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAFHF--TPRLSRLNLSFN-ALESLSWKT   99 (156)
T ss_dssp             TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGGGS--CSCCCEEECCSS-CCSCCCSTT
T ss_pred             cccccCccccCeeecCCCccccccCchhhccccccCcceeec-cccCCcccccccc--cccccceeccCC-CCcccChhh
Confidence            44566677888888876666777643 466788888888887 456555    677  888888888774 666666533


Q ss_pred             C-CCCccEEEEeCCC
Q 019416          108 F-PTTLKRLKICDCT  121 (341)
Q Consensus       108 ~-~~~L~~L~l~~~~  121 (341)
                      + ..+|++|++++++
T Consensus       100 ~~~~~l~~L~L~~Np  114 (156)
T d2ifga3         100 VQGLSLQELVLSGNP  114 (156)
T ss_dssp             TCSCCCCEEECCSSC
T ss_pred             hccccccccccCCCc
Confidence            3 4467888888765

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.4e-06  Score=78.48  Aligned_cols=102  Identities=17%  Similarity=0.181  Sum_probs=67.5

Q ss_pred             CCcCeEEcCCCCCCccc--cccccCCCCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCccc-----c
Q 019416           40 ETLESLEIDNLSSLASF--LRSELAATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFSNS-----K  104 (341)
Q Consensus        40 ~~L~~L~l~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~~~-----~  104 (341)
                      ++|++|++++ ..++..  ..-+..+++++.|++++|. +.+.        +..  +++|++|++++| .+...     .
T Consensus         2 ~~l~~ld~~~-~~i~~~~~~~l~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~--~~~L~~LdLs~N-~i~~~~~~~l~   76 (460)
T d1z7xw1           2 LDIQSLDIQC-EELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRV--NPALAELNLRSN-ELGDVGVHCVL   76 (460)
T ss_dssp             EEEEEEEEES-CCCCHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHT--CTTCCEEECTTC-CCHHHHHHHHH
T ss_pred             CCCCEEEeeC-CcCChHHHHHHHHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhc--CCCCCEEECcCC-cCChHHHHHHH
Confidence            4689999985 455543  1224457999999999984 4322        678  999999999986 44321     1


Q ss_pred             C-C-CCCCCccEEEEeCCCChHHHHHHhhhhcc--cccceEeecCC
Q 019416          105 Q-D-YFPTTLKRLKICDCTNAELILKVLMDQKG--LALESLEVDGC  146 (341)
Q Consensus       105 ~-~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~  146 (341)
                      . . ....+|++|++++|.........++..+.  ++|++|++.++
T Consensus        77 ~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N  122 (460)
T d1z7xw1          77 QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN  122 (460)
T ss_dssp             HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred             HHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccc
Confidence            1 1 11357999999999743221112444443  89999999874

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.01  E-value=1.3e-05  Score=69.91  Aligned_cols=229  Identities=16%  Similarity=0.163  Sum_probs=114.5

Q ss_pred             CCCCCCCcCeEEcCCCCCC----ccccccccCCCCccEEeccCCC--Cch--------hh---hcccCCCCcceEeeecC
Q 019416           35 GIRTGETLESLEIDNLSSL----ASFLRSELAATTVKQLKINKCP--DLE--------VL---LHRMAYTSLEYLEFSSC   97 (341)
Q Consensus        35 ~l~~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L~~L~l~~~~--~l~--------~~---~~~~~l~~L~~L~l~~~   97 (341)
                      .+.....|+.|+++++..-    ..+...+...++|+.|+++++.  ...        .+   +..  +++|+.|++++|
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~--~~~L~~L~L~~n  103 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK--CPKLHTVRLSDN  103 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTT--CTTCCEEECCSC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhh--CCCccccccccc
Confidence            3456888999999986321    1222334557899999998753  111        11   566  788999999876


Q ss_pred             CCCccccC------CCCCCCccEEEEeCCCChHHHHHHhhhhc----------c-cccceEeecCCCCccccCCC-----
Q 019416           98 LFFSNSKQ------DYFPTTLKRLKICDCTNAELILKVLMDQK----------G-LALESLEVDGCSSLFSLPIN-----  155 (341)
Q Consensus        98 ~~l~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----------~-~~L~~L~l~~~~~l~~l~~~-----  155 (341)
                       .+.....      ....++|++|.+++|.........+...+          . +.|+.+.+.++ .++.-...     
T Consensus       104 -~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~~~~l~~~  181 (344)
T d2ca6a1         104 -AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKT  181 (344)
T ss_dssp             -CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHH
T ss_pred             -ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc-cccccccccccch
Confidence             3332211      11257899999998863221000011111          1 67777777663 33221110     


Q ss_pred             -CCccccceEEeeccCCccccCcceeeeCCCCCCcCCCcccccccccccccccceEeeccCcCC----CcccccCCCCCC
Q 019416          156 -QLPATLRHLRIVNCMNLKSLGESSKIRNCDSVVGPEGESSLENMTSSHTLELRELEIWDCLEL----EFLPEDMHNFTD  230 (341)
Q Consensus       156 -~~~~~L~~L~l~~~~~l~~~~~~l~l~~~~~l~~~~~~~~~~~l~~~~~~~L~~L~l~~~~~l----~~l~~~~~~l~~  230 (341)
                       ...++|+.|+++++. +......-.+.              ..+.  .+++|+.|+++++.--    ..+...+..+++
T Consensus       182 l~~~~~L~~L~L~~n~-i~~~g~~~~l~--------------~~l~--~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~  244 (344)
T d2ca6a1         182 FQSHRLLHTVKMVQNG-IRPEGIEHLLL--------------EGLA--YCQELKVLDLQDNTFTHLGSSALAIALKSWPN  244 (344)
T ss_dssp             HHHCTTCCEEECCSSC-CCHHHHHHHHH--------------TTGG--GCTTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred             hhhhhhhccccccccc-ccccccccchh--------------hhhc--chhhhccccccccccccccccccccccccccc
Confidence             123567777776542 21100000000              0011  2335777777665311    113344455667


Q ss_pred             cCeEEeecCCCCce-----ecC--CCCCCCCcceEecccCccccc-----chhhhc-cCCCcCeEeecC
Q 019416          231 LNLLSISNCPSLES-----FPE--GGLPNTSLTSLLISECENLMS-----LPHQIH-KATSLQDLSVSG  286 (341)
Q Consensus       231 L~~L~l~~c~~l~~-----~~~--~~~~~~~L~~L~l~~~~~l~~-----l~~~l~-~l~~L~~L~l~~  286 (341)
                      |++|++++|. +..     +..  ...+.+.|++|+++++ .++.     +...+. ..+.|+.|++++
T Consensus       245 L~~L~Ls~n~-i~~~g~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~  311 (344)
T d2ca6a1         245 LRELGLNDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNG  311 (344)
T ss_dssp             CCEEECTTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred             chhhhhhcCc-cCchhhHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCC
Confidence            7777777764 211     100  0112246667777664 2431     233332 455666666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.00  E-value=8.1e-08  Score=77.61  Aligned_cols=121  Identities=14%  Similarity=0.147  Sum_probs=78.6

Q ss_pred             CCcCeEEcCCC-CCCccccccccCCCCccEEeccCCCCchhh--hcccCCCCcceEeeecCCCCccccCCC-CCCCccEE
Q 019416           40 ETLESLEIDNL-SSLASFLRSELAATTVKQLKINKCPDLEVL--LHRMAYTSLEYLEFSSCLFFSNSKQDY-FPTTLKRL  115 (341)
Q Consensus        40 ~~L~~L~l~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~l~~~--~~~~~l~~L~~L~l~~~~~l~~~~~~~-~~~~L~~L  115 (341)
                      ..++.+++.+. +.++.++.++..+++|++|++++ +.+..+  +..  +++|++|++++| .+..++... .+++|+.|
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~-n~I~~i~~l~~--l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALST-NNIEKISSLSG--MENLRILSLGRN-LIKKIENLDAVADTLEEL   98 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSE-EEESCCCCHHH--HTTCCEEECCEE-EECSCSSHHHHHHHCCEE
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcc-cCCCCcccccC--CccccChhhccc-cccccccccccccccccc
Confidence            33455565532 34555555677788888888887 456666  777  888888888875 566665432 25678888


Q ss_pred             EEeCCCChHHHHHHhhhhcc-cccceEeecCCCCccccCC---CCCccccceEEeeccC
Q 019416          116 KICDCTNAELILKVLMDQKG-LALESLEVDGCSSLFSLPI---NQLPATLRHLRIVNCM  170 (341)
Q Consensus       116 ~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~---~~~~~~L~~L~l~~~~  170 (341)
                      ++++|. +..    ++.... ++|+.|++++ +.++.++.   ...+++|+.|++++++
T Consensus        99 ~l~~N~-i~~----l~~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          99 WISYNQ-IAS----LSGIEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ECSEEE-CCC----HHHHHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccc-ccc----ccccccccccccccccc-chhccccccccccCCCccceeecCCCc
Confidence            888875 333    332222 7888888877 35555432   2456788888888753

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.97  E-value=3.8e-08  Score=79.63  Aligned_cols=123  Identities=18%  Similarity=0.169  Sum_probs=84.0

Q ss_pred             cccccceEeeccCcCCCcccccCCCCCCcCeEEeecCCCCceecCCCCCCCCcceEecccCcccccchhhhccCCCcCeE
Q 019416          203 HTLELRELEIWDCLELEFLPEDMHNFTDLNLLSISNCPSLESFPEGGLPNTSLTSLLISECENLMSLPHQIHKATSLQDL  282 (341)
Q Consensus       203 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~l~~l~~L~~L  282 (341)
                      .+++|++|+++++ .++.++ .+..+++|+.|++++| .++.++.....+++|++|+++++ .++.++ .+..+++|+.|
T Consensus        46 ~L~~L~~L~Ls~n-~I~~i~-~l~~l~~L~~L~Ls~N-~i~~i~~~~~~~~~L~~L~l~~N-~i~~l~-~~~~l~~L~~L  120 (198)
T d1m9la_          46 TLKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRN-LIKKIENLDAVADTLEELWISYN-QIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HTTTCCEEECSEE-EESCCC-CHHHHTTCCEEECCEE-EECSCSSHHHHHHHCCEEECSEE-ECCCHH-HHHHHHHSSEE
T ss_pred             cccccceeECccc-CCCCcc-cccCCccccChhhccc-ccccccccccccccccccccccc-cccccc-ccccccccccc
Confidence            4667999999875 456664 5777889999999886 35555432222358999999885 588775 57778899999


Q ss_pred             eecCCCCCccCCC---CCCCCCccEEEeecCCCCCc------cc---cccccCCCceeEEE
Q 019416          283 SVSGCPSLMSFPH---GGLPPNLISLGIIDCENLIP------LS---QWELHKLKHLNKYT  331 (341)
Q Consensus       283 ~l~~c~~l~~~~~---~~~~~~L~~L~l~~c~~~~~------~~---~~~i~~~~~L~~l~  331 (341)
                      +++++ .+..++.   -...++|+.|++.+++....      ..   ...+.++++|+.|+
T Consensus       121 ~L~~N-~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         121 YMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EESEE-ECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccc-hhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            99874 5665543   14468899999988753321      00   01146678888775

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.78  E-value=8.9e-06  Score=70.92  Aligned_cols=84  Identities=18%  Similarity=0.147  Sum_probs=47.3

Q ss_pred             ccCCCCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCccc---cC--------CCCCCCccEEEEeCC
Q 019416           60 ELAATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFSNS---KQ--------DYFPTTLKRLKICDC  120 (341)
Q Consensus        60 ~~~l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~~~---~~--------~~~~~~L~~L~l~~~  120 (341)
                      .....+|++|+++++ .+...        +..  .++|+.++++++..-...   +.        ....++|++|++++|
T Consensus        27 L~~~~~l~~L~Ls~n-~i~~~~~~~l~~~l~~--~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGN-TIGTEAARWLSENIAS--KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             HHHCSCCCEEECTTS-EECHHHHHHHHHTTTT--CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HhhCCCCCEEECcCC-cCCHHHHHHHHHHHHh--CCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            344688999999984 44321        566  788999998865221111   10        122577888888877


Q ss_pred             CChHHHHHHhhhhcc--cccceEeecCC
Q 019416          121 TNAELILKVLMDQKG--LALESLEVDGC  146 (341)
Q Consensus       121 ~~~~~~~~~~~~~~~--~~L~~L~l~~~  146 (341)
                      ..-......+...+.  ++|+.|++++|
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n  131 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNN  131 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSS
T ss_pred             ccccccccchhhhhcccccchheecccc
Confidence            521110000222222  67777777664

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.00067  Score=51.89  Aligned_cols=56  Identities=14%  Similarity=0.135  Sum_probs=31.0

Q ss_pred             CCCCccEEeccCCCCchhh------hcccCCCCcceEeeecCCCCccccCCCC--CCCccEEEEeCCC
Q 019416           62 AATTVKQLKINKCPDLEVL------LHRMAYTSLEYLEFSSCLFFSNSKQDYF--PTTLKRLKICDCT  121 (341)
Q Consensus        62 ~l~~L~~L~l~~~~~l~~~------~~~~~l~~L~~L~l~~~~~l~~~~~~~~--~~~L~~L~l~~~~  121 (341)
                      .+++|++|+++++ ++..+      ++.  +++|+.|+++++ .+..++...+  ..+|+.|++.+++
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~--l~~L~~L~Ls~N-~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQK--APNLKILNLSGN-ELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHH--STTCCCCCCTTS-CCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhh--CCcccccccccC-ccccchhhhhhhccccceeecCCCC
Confidence            4566666666663 33322      455  666777777663 5555543221  2356666666665

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0018  Score=57.25  Aligned_cols=82  Identities=13%  Similarity=0.210  Sum_probs=57.8

Q ss_pred             CCCCCCcCeEEcCCCCCCcc-----ccccccCCCCccEEeccCCCCchhh-----h----cccCCCCcceEeeecCCCCc
Q 019416           36 IRTGETLESLEIDNLSSLAS-----FLRSELAATTVKQLKINKCPDLEVL-----L----HRMAYTSLEYLEFSSCLFFS  101 (341)
Q Consensus        36 l~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~l~~~-----~----~~~~l~~L~~L~l~~~~~l~  101 (341)
                      +..++++++|+|++|. ++.     +...+..+++|++|++++| .+.+.     .    ..  ..+|++|++++| .+.
T Consensus        23 ~~~l~~l~~L~L~~~~-i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~~~--~~~L~~L~L~~n-~it   97 (460)
T d1z7xw1          23 LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTP--SCKIQKLSLQNC-CLT   97 (460)
T ss_dssp             HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCST--TCCCCEEECTTS-CCB
T ss_pred             HHhCCCCCEEEeCCCC-CCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHhcC--CCCCCEEECCCC-Ccc
Confidence            4568899999999984 332     2233456899999999984 56432     2    22  458999999987 454


Q ss_pred             ccc------CCCCCCCccEEEEeCCCC
Q 019416          102 NSK------QDYFPTTLKRLKICDCTN  122 (341)
Q Consensus       102 ~~~------~~~~~~~L~~L~l~~~~~  122 (341)
                      ...      .....++|++|++++|..
T Consensus        98 ~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          98 GAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             GGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             ccccccccchhhccccccccccccccc
Confidence            332      134478999999999874

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=95.40  E-value=0.024  Score=42.94  Aligned_cols=80  Identities=11%  Similarity=0.254  Sum_probs=45.9

Q ss_pred             CCCCCcCeEEcCCCCCCcc-----ccccccCCCCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCccc
Q 019416           37 RTGETLESLEIDNLSSLAS-----FLRSELAATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFSNS  103 (341)
Q Consensus        37 ~~~~~L~~L~l~~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~~~  103 (341)
                      ...++|+.|+|+++..++.     +...+...++|++|++++| .+.+.        +..  .+.|++|++++| .+..-
T Consensus        12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~--n~~L~~L~L~~n-~i~~~   87 (167)
T d1pgva_          12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIET--SPSLRVLNVESN-FLTPE   87 (167)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHH--CSSCCEEECCSS-BCCHH
T ss_pred             hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhh--cccccceeeehh-hcchH
Confidence            3567888888886543332     1112334577888888875 34321        555  677788888775 33322


Q ss_pred             cC------CCCCCCccEEEEeCC
Q 019416          104 KQ------DYFPTTLKRLKICDC  120 (341)
Q Consensus       104 ~~------~~~~~~L~~L~l~~~  120 (341)
                      ..      ...-++|++|+++++
T Consensus        88 g~~~l~~aL~~n~sL~~L~l~~n  110 (167)
T d1pgva_          88 LLARLLRSTLVTQSIVEFKADNQ  110 (167)
T ss_dssp             HHHHHHHHTTTTCCCSEEECCCC
T ss_pred             HHHHHHHHHHhCCcCCEEECCCC
Confidence            11      222466777777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.96  E-value=0.00087  Score=51.22  Aligned_cols=59  Identities=22%  Similarity=0.121  Sum_probs=38.6

Q ss_pred             hcccCCCCcceEeeecCCCCccccCC----CCCCCccEEEEeCCCChHHHHHHhhhh--cc-cccceEeecCCC
Q 019416           81 LHRMAYTSLEYLEFSSCLFFSNSKQD----YFPTTLKRLKICDCTNAELILKVLMDQ--KG-LALESLEVDGCS  147 (341)
Q Consensus        81 ~~~~~l~~L~~L~l~~~~~l~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~-~~L~~L~l~~~~  147 (341)
                      ...  +++|++|++++| .+..++..    ..+++|+.|++++|. ++.    ++..  .. .+|+.|++.+++
T Consensus        61 ~~~--~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~----l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          61 EEN--IPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE-LKS----ERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HHH--CTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSC-CCC----GGGHHHHTTCCCSSCCCTTST
T ss_pred             HHh--CCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCc-ccc----chhhhhhhccccceeecCCCC
Confidence            567  888888888885 56655432    236888888888876 333    3321  11 667888888743

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.96  E-value=0.021  Score=43.28  Aligned_cols=80  Identities=15%  Similarity=0.154  Sum_probs=48.4

Q ss_pred             CCCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCcccc--C----CCCCCCccEEEEeCCCChHHHHH
Q 019416           63 ATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFSNSK--Q----DYFPTTLKRLKICDCTNAELILK  128 (341)
Q Consensus        63 l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~~~~--~----~~~~~~L~~L~l~~~~~~~~~~~  128 (341)
                      .++|++|++++++.+...        +..  .++|++|++++| .+..-.  .    ....+.|++|++++|.....-..
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~--n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~   90 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACN--SKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNFLTPELLA   90 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTT--CSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhh--CCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhhcchHHHH
Confidence            478999999876555332        666  788999999876 343221  1    11257788888888863332111


Q ss_pred             Hhhhhcc--cccceEeecC
Q 019416          129 VLMDQKG--LALESLEVDG  145 (341)
Q Consensus       129 ~~~~~~~--~~L~~L~l~~  145 (341)
                      .+...+.  ++|++|++++
T Consensus        91 ~l~~aL~~n~sL~~L~l~~  109 (167)
T d1pgva_          91 RLLRSTLVTQSIVEFKADN  109 (167)
T ss_dssp             HHHHHTTTTCCCSEEECCC
T ss_pred             HHHHHHHhCCcCCEEECCC
Confidence            1222232  6777777765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=92.89  E-value=0.15  Score=38.14  Aligned_cols=58  Identities=19%  Similarity=0.188  Sum_probs=35.7

Q ss_pred             CCCCCcCeEEcCCCCCCccc-----cccccCCCCccEEeccCCCCchhh--------hcccCCCCcceEeeecC
Q 019416           37 RTGETLESLEIDNLSSLASF-----LRSELAATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSC   97 (341)
Q Consensus        37 ~~~~~L~~L~l~~~~~~~~~-----~~~~~~l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~   97 (341)
                      ...+.|++|+++++..++.-     ...+...++|++|++++| .+...        +..  .++++.++++++
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~--~~~l~~l~l~~~   84 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKV--NNTLKSLNVESN   84 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHH--CSSCCEEECCSS
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhh--cccchhhhhccc
Confidence            35678888888865444321     112335678888888875 33221        556  677777777765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.07  E-value=0.17  Score=37.82  Aligned_cols=81  Identities=15%  Similarity=0.140  Sum_probs=46.8

Q ss_pred             CCCCccEEeccCCCCchhh--------hcccCCCCcceEeeecCCCCccccC------CCCCCCccEEEEeCCCChHHHH
Q 019416           62 AATTVKQLKINKCPDLEVL--------LHRMAYTSLEYLEFSSCLFFSNSKQ------DYFPTTLKRLKICDCTNAELIL  127 (341)
Q Consensus        62 ~l~~L~~L~l~~~~~l~~~--------~~~~~l~~L~~L~l~~~~~l~~~~~------~~~~~~L~~L~l~~~~~~~~~~  127 (341)
                      ..++|++|++++++.+...        +..  .++|++|++++| .+..-..      ....++++.+++++|.......
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~--n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~   91 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKT--NTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI   91 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTT--CCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhc--CCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccccccchhH
Confidence            3478888888875555322        556  788888888876 3322211      1125778888888776433321


Q ss_pred             HHhhhhcc--cccceEeecC
Q 019416          128 KVLMDQKG--LALESLEVDG  145 (341)
Q Consensus       128 ~~~~~~~~--~~L~~L~l~~  145 (341)
                      ..+...+.  ++|+.+++..
T Consensus        92 ~~l~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          92 LALVEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHHHHGGGGCSSCCEEECCC
T ss_pred             HHHHHHHHhCccccEEeecc
Confidence            11223332  6666666543